-- dump date   	20140619_013044
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
216591000001	Sodium/hydrogen exchanger family; Region: Na_H_Exchanger; pfam00999
216591000002	10 probable transmembrane helices predicted for BCAL0001 by TMHMM2.0 at aa 15-37, 44-66, 114-136, 157-176, 191-213, 233-264, 279-301, 306-328, 338-357 and 369-391
216591000003	HMMPfam hit to PF00999, Sodium/hydrogen exchanger family, score 8.4e-11
216591000004	gamma-glutamyl:cysteine ligase; Provisional; Region: PRK13516
216591000005	carboxylate-amine ligase, YbdK family; Region: gshA_cyan_rel; TIGR02050
216591000006	HMMPfam hit to PF04107, Glutamate-cysteine ligase family 2(GCS2), score 1.3e-60
216591000007	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591000008	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591000009	putative DNA binding site [nucleotide binding]; other site
216591000010	putative Zn2+ binding site [ion binding]; other site
216591000011	HMMPfam hit to PF01047, MarR family, score 1.1e-12
216591000012	HMMPfam hit to PF01022, Bacterial regulatory protein, arsR family, score 1.4e-05
216591000013	GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]; Region: GuaA; COG0518
216591000014	Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_1; cd01741
216591000015	catalytic triad [active]
216591000016	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 4.3e-13
216591000017	PS00442 Glutamine amidotransferases class-I active site.
216591000018	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591000019	Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis.  Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing...; Region: OYE_YqiM_FMN; cd02932
216591000020	active site
216591000021	FMN binding site [chemical binding]; other site
216591000022	substrate binding site [chemical binding]; other site
216591000023	homotetramer interface [polypeptide binding]; other site
216591000024	catalytic residue [active]
216591000025	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 4.2e-68
216591000026	Proteins containing SET domain [General function prediction only]; Region: COG2940
216591000027	SET domain; Region: SET; pfam00856
216591000028	HMMPfam hit to PF00856, SET domain, score 1.3e-24
216591000029	Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521
216591000030	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591000031	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591000032	dimer interface [polypeptide binding]; other site
216591000033	phosphorylation site [posttranslational modification]
216591000034	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591000035	ATP binding site [chemical binding]; other site
216591000036	Mg2+ binding site [ion binding]; other site
216591000037	G-X-G motif; other site
216591000038	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.6e-36
216591000039	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.6e-14
216591000040	HMMPfam hit to PF00672, HAMP domain, score 2.7e-06
216591000041	2 probable transmembrane helices predicted for BCAL0007 by TMHMM2.0 at aa 20-39 and 161-183
216591000042	HMMPfam hit to PF08521, Two-component sensor kinase N-terminal, score 3.8e-48
216591000043	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591000044	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591000045	active site
216591000046	phosphorylation site [posttranslational modification]
216591000047	intermolecular recognition site; other site
216591000048	dimerization interface [polypeptide binding]; other site
216591000049	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591000050	DNA binding site [nucleotide binding]
216591000051	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1.5e-22
216591000052	HMMPfam hit to PF00072, Response regulator receiver domain, score 6.5e-36
216591000053	Protein of unknown function (DUF3717); Region: DUF3717; pfam12512
216591000054	PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH  (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme.  DCoH stimulates gene expression by...; Region: PCD_DCoH_subfamily_b; cd00914
216591000055	aromatic arch; other site
216591000056	DCoH dimer interaction site [polypeptide binding]; other site
216591000057	DCoH /HNF-1 dimer interaction site [polypeptide binding]; other site
216591000058	DCoH tetramer interaction site [polypeptide binding]; other site
216591000059	substrate binding site [chemical binding]; other site
216591000060	HMMPfam hit to PF01329, Pterin 4 alpha carbinolamine dehydratase, score 2.4e-36
216591000061	Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH); Region: pro_PheOH; cd03348
216591000062	cofactor binding site; other site
216591000063	metal binding site [ion binding]; metal-binding site
216591000064	HMMPfam hit to PF00351, Biopterin-dependent aromatic amino acid h, score 2e-11
216591000065	PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature.
216591000066	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591000067	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
216591000068	putative DNA binding site [nucleotide binding]; other site
216591000069	putative Zn2+ binding site [ion binding]; other site
216591000070	AsnC family; Region: AsnC_trans_reg; pfam01037
216591000071	Predicted helix-turn-helix motif with score 1383.000, SD 3.90 at aa 26-47, sequence ATHQQLGEEVPLSPSQIGRRLQ
216591000072	HMMPfam hit to PF01037, AsnC family, score 3e-28
216591000073	Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily; Region: CYTH-like_AC_IV-like; cd07890
216591000074	putative active site [active]
216591000075	putative metal binding residues [ion binding]; other site
216591000076	signature motif; other site
216591000077	putative triphosphate binding site [ion binding]; other site
216591000078	dimer interface [polypeptide binding]; other site
216591000079	HMMPfam hit to PF01928, CYTH domain, score 2.4e-19
216591000080	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591000081	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591000082	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591000083	dimerization interface [polypeptide binding]; other site
216591000084	HMMPfam hit to PF03466, LysR substrate binding domain, score 2e-27
216591000085	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 9.4e-20
216591000086	Predicted helix-turn-helix motif with score 1604.000, SD 4.65 at aa 16-37, sequence GNLTRAAAQLHLTQPAVSLQIK
216591000087	choline dehydrogenase; Validated; Region: PRK02106
216591000088	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591000089	HMMPfam hit to PF00732, GMC oxidoreductase, score 1.8e-105
216591000090	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000091	PS00624 GMC oxidoreductases signature 2.
216591000092	HMMPfam hit to PF05199, GMC oxidoreductase, score 2.5e-53
216591000093	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
216591000094	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591000095	Walker A/P-loop; other site
216591000096	ATP binding site [chemical binding]; other site
216591000097	Q-loop/lid; other site
216591000098	ABC transporter signature motif; other site
216591000099	Walker B; other site
216591000100	D-loop; other site
216591000101	H-loop/switch region; other site
216591000102	HMMPfam hit to PF00005, ABC transporter, score 5.9e-45
216591000103	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000104	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
216591000105	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591000106	Walker A/P-loop; other site
216591000107	ATP binding site [chemical binding]; other site
216591000108	Q-loop/lid; other site
216591000109	ABC transporter signature motif; other site
216591000110	Walker B; other site
216591000111	D-loop; other site
216591000112	H-loop/switch region; other site
216591000113	HMMPfam hit to PF00005, ABC transporter, score 1.1e-34
216591000114	PS00211 ABC transporters family signature.
216591000115	Periplasmic binding protein; Region: Peripla_BP_6; pfam13458
216591000116	Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327
216591000117	putative ligand binding site [chemical binding]; other site
216591000118	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591000119	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591000120	TM-ABC transporter signature motif; other site
216591000121	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 2.1e-35
216591000122	8 probable transmembrane helices predicted for BCAL0018 by TMHMM2.0 at aa 15-37, 39-61, 65-87, 100-122, 148-167, 199-221, 236-258 and 265-287
216591000123	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
216591000124	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591000125	TM-ABC transporter signature motif; other site
216591000126	8 probable transmembrane helices predicted for BCAL0019 by TMHMM2.0 at aa 5-27, 42-64, 77-99, 103-122, 151-173, 203-225, 238-260 and 284-306
216591000127	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 6.5e-20
216591000128	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591000129	Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids; Region: PBP1_ABC-type_HAAT_like; cd06333
216591000130	putative ligand binding site [chemical binding]; other site
216591000131	HMMPfam hit to PF01094, Receptor family ligand binding region, score 2e-06
216591000132	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591000133	TM-ABC transporter signature motif; other site
216591000134	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 5e-05
216591000135	9 probable transmembrane helices predicted for BCAL0021 by TMHMM2.0 at aa 17-39, 61-83, 96-118, 123-145, 157-179, 199-221, 253-275, 290-312 and 325-342
216591000136	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
216591000137	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591000138	TM-ABC transporter signature motif; other site
216591000139	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
216591000140	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591000141	Walker A/P-loop; other site
216591000142	ATP binding site [chemical binding]; other site
216591000143	Q-loop/lid; other site
216591000144	ABC transporter signature motif; other site
216591000145	Walker B; other site
216591000146	D-loop; other site
216591000147	H-loop/switch region; other site
216591000148	9 probable transmembrane helices predicted for BCAL0022 by TMHMM2.0 at aa 9-28, 32-54, 61-80, 84-106, 113-132, 161-183, 207-229, 249-271 and 284-306
216591000149	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 2.5e-28
216591000150	HMMPfam hit to PF00005, ABC transporter, score 7.5e-56
216591000151	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000152	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
216591000153	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591000154	Walker A/P-loop; other site
216591000155	ATP binding site [chemical binding]; other site
216591000156	Q-loop/lid; other site
216591000157	ABC transporter signature motif; other site
216591000158	Walker B; other site
216591000159	D-loop; other site
216591000160	H-loop/switch region; other site
216591000161	HMMPfam hit to PF00005, ABC transporter, score 7.2e-46
216591000162	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000163	PS00211 ABC transporters family signature.
216591000164	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
216591000165	tRNA:m(5)U-54 methyltransferase; Region: gid_trmFO; TIGR00137
216591000166	NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; COG1206
216591000167	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932
216591000168	HMMPfam hit to PF01134, Glucose inhibited division protein A, score 1.4e-274
216591000169	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0016
216591000170	PS01280 Glucose inhibited division protein A family signature 1.
216591000171	PS01281 Glucose inhibited division protein A family signature 2.
216591000172	Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]; Region: GidB; COG0357
216591000173	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591000174	S-adenosylmethionine binding site [chemical binding]; other site
216591000175	HMMPfam hit to PF02527, Glucose inhibited division protein, score 5.5e-58
216591000176	HMMPfam hit to PF08241, Methyltransferase domain, score 0.0011
216591000177	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
216591000178	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591000179	P-loop; other site
216591000180	Magnesium ion binding site [ion binding]; other site
216591000181	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591000182	Magnesium ion binding site [ion binding]; other site
216591000183	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 1.4e-58
216591000184	Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475
216591000185	ParB-like nuclease domain; Region: ParBc; pfam02195
216591000186	HMMPfam hit to PF02195, ParB-like nuclease domain, score 2e-35
216591000187	Predicted helix-turn-helix motif with score 1768.000, SD 5.21 at aa 148-169, sequence FTHEQAAESVGRSRSAVSNLLR
216591000188	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl17221
216591000189	transmembrane helices; other site
216591000190	Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]; Region: ArsB; COG1055
216591000191	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl17221
216591000192	9 probable transmembrane helices predicted for BCAL0028 by TMHMM2.0 at aa 13-35, 91-113, 125-147, 167-189, 210-243, 253-275, 288-310, 320-342 and 351-373
216591000193	HMMPfam hit to PF03600, Citrate transporter, score 5.2e-05
216591000194	ATP synthase I chain; Region: ATP_synt_I; cl09170
216591000195	4 probable transmembrane helices predicted for BCAL0029 by TMHMM2.0 at aa 68-87, 91-113, 126-148 and 153-172
216591000196	F0F1-type ATP synthase, subunit a [Energy production and conversion]; Region: AtpB; COG0356
216591000197	F0F1 ATP synthase subunit A; Validated; Region: PRK05815
216591000198	HMMPfam hit to PF00119, ATP synthase A chain, score 2.9e-55
216591000199	5 probable transmembrane helices predicted for BCAL0030 by TMHMM2.0 at aa 47-66, 95-117, 152-171, 218-240 and 260-282
216591000200	PS00449 ATP synthase a subunit signature.
216591000201	F0F1 ATP synthase subunit C; Validated; Region: PRK06876
216591000202	HMMPfam hit to PF00137, ATP synthase subunit C, score 5e-18
216591000203	2 probable transmembrane helices predicted for BCAL0031 by TMHMM2.0 at aa 15-37 and 58-80
216591000204	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000205	PS00605 ATP synthase c subunit signature.
216591000206	F0F1 ATP synthase subunit B; Validated; Region: PRK05759
216591000207	F0F1-type ATP synthase, subunit b [Energy production and conversion]; Region: AtpF; COG0711
216591000208	HMMPfam hit to PF00430, ATP synthase B/B' CF(0), score 3e-25
216591000209	F0F1 ATP synthase subunit delta; Validated; Region: PRK05758
216591000210	ATP synthase delta (OSCP) subunit; Region: OSCP; pfam00213
216591000211	HMMPfam hit to PF00213, ATP synthase delta (OSCP) subunit, score 9.6e-32
216591000212	F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281
216591000213	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
216591000214	F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132
216591000215	beta subunit interaction interface [polypeptide binding]; other site
216591000216	Walker A motif; other site
216591000217	ATP binding site [chemical binding]; other site
216591000218	Walker B motif; other site
216591000219	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
216591000220	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 2.2e-19
216591000221	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 5.7e-122
216591000222	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000223	PS00152 ATP synthase alpha and beta subunits signature.
216591000224	HMMPfam hit to PF00306, ATP synthase alpha/beta chain, C termin, score 1.6e-33
216591000225	mitochondrial ATP synthase gamma subunit; Region: F1-ATPase_gamma; cd12151
216591000226	core domain interface [polypeptide binding]; other site
216591000227	delta subunit interface [polypeptide binding]; other site
216591000228	epsilon subunit interface [polypeptide binding]; other site
216591000229	HMMPfam hit to PF00231, ATP synthase, score 7.8e-134
216591000230	PS00153 ATP synthase gamma subunit signature.
216591000231	F0F1 ATP synthase subunit beta; Validated; Region: PRK09280
216591000232	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
216591000233	F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133
216591000234	alpha subunit interaction interface [polypeptide binding]; other site
216591000235	Walker A motif; other site
216591000236	ATP binding site [chemical binding]; other site
216591000237	Walker B motif; other site
216591000238	inhibitor binding site; inhibition site
216591000239	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
216591000240	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 3.2e-23
216591000241	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 1.9e-96
216591000242	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000243	PS00152 ATP synthase alpha and beta subunits signature.
216591000244	HMMPfam hit to PF00306, ATP synthase alpha/beta chain, C termin, score 4.6e-48
216591000245	F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571
216591000246	mitochondrial ATP synthase delta subunit; Region: F1-ATPase_delta; cd12152
216591000247	gamma subunit interface [polypeptide binding]; other site
216591000248	epsilon subunit interface [polypeptide binding]; other site
216591000249	LBP interface [polypeptide binding]; other site
216591000250	HMMPfam hit to PF02823, ATP synthase, Delta/Epsilon chain, beta, score 2.5e-31
216591000251	HMMPfam hit to PF00401, ATP synthase, Delta/Epsilon chain, long, score 0.0026
216591000252	AMP-binding domain protein; Validated; Region: PRK08315
216591000253	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591000254	Uncharacterized subfamily of fatty acid CoA ligase (FACL); Region: FACL_like_2; cd05917
216591000255	acyl-activating enzyme (AAE) consensus motif; other site
216591000256	putative AMP binding site [chemical binding]; other site
216591000257	putative active site [active]
216591000258	putative CoA binding site [chemical binding]; other site
216591000259	HMMPfam hit to PF00501, AMP-binding enzyme, score 8e-129
216591000260	PS00455 Putative AMP-binding domain signature.
216591000261	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000262	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591000263	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591000264	substrate binding pocket [chemical binding]; other site
216591000265	membrane-bound complex binding site; other site
216591000266	hinge residues; other site
216591000267	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 5.9e-22
216591000268	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591000269	Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction...; Region: URO-D; cd00717
216591000270	substrate binding site [chemical binding]; other site
216591000271	active site
216591000272	HMMPfam hit to PF01208, Uroporphyrinogen decarboxylase (URO-D), score 2.6e-165
216591000273	PS00906 Uroporphyrinogen decarboxylase signature 1.
216591000274	PS00907 Uroporphyrinogen decarboxylase signature 2.
216591000275	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000276	Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]; Region: PriA; COG1198
216591000277	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591000278	ATP binding site [chemical binding]; other site
216591000279	putative Mg++ binding site [ion binding]; other site
216591000280	helicase superfamily c-terminal domain; Region: HELICc; smart00490
216591000281	nucleotide binding region [chemical binding]; other site
216591000282	ATP-binding site [chemical binding]; other site
216591000283	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 1.5e-09
216591000284	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 3.9e-18
216591000285	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000286	PS00036 bZIP transcription factors basic domain signature.
216591000287	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 2.4e-06
216591000288	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed; Region: putA; PRK11809
216591000289	Predicted transcriptional regulator [Transcription]; Region: COG3905
216591000290	Proline dehydrogenase [Amino acid transport and metabolism]; Region: PutA; COG0506
216591000291	Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA; Region: ALDH_PutA-P5CDH; cd07125
216591000292	Glutamate binding site [chemical binding]; other site
216591000293	NAD binding site [chemical binding]; other site
216591000294	catalytic residues [active]
216591000295	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
216591000296	HMMPfam hit to PF01619, Proline dehydrogenase, score 6.9e-174
216591000297	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.7e-109
216591000298	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591000299	PS00070 Aldehyde dehydrogenases cysteine active site.
216591000300	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591000301	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591000302	dimerization interface [polypeptide binding]; other site
216591000303	ligand binding site [chemical binding]; other site
216591000304	HMMPfam hit to PF01094, Receptor family ligand binding region, score 2.9e-48
216591000305	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591000306	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591000307	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591000308	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591000309	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591000310	putative transposase OrfB; Reviewed; Region: PHA02517
216591000311	HTH-like domain; Region: HTH_21; pfam13276
216591000312	Integrase core domain; Region: rve; pfam00665
216591000313	Integrase core domain; Region: rve_2; pfam13333
216591000314	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591000315	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187
216591000316	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591000317	Bacterial Bile acid CoA ligases and similar proteins; Region: BACL_like; cd05929
216591000318	acyl-activating enzyme (AAE) consensus motif; other site
216591000319	acyl-activating enzyme (AAE) consensus motif; other site
216591000320	putative AMP binding site [chemical binding]; other site
216591000321	putative active site [active]
216591000322	putative CoA binding site [chemical binding]; other site
216591000323	HMMPfam hit to PF00501, AMP-binding enzyme, score 3.9e-114
216591000324	PS00455 Putative AMP-binding domain signature.
216591000325	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591000326	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591000327	active site
216591000328	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 1.5e-44
216591000329	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 8.6e-06
216591000330	PS00073 Acyl-CoA dehydrogenases signature 2.
216591000331	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 1.6e-16
216591000332	PS00072 Acyl-CoA dehydrogenases signature 1.
216591000333	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591000334	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591000335	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 1.6e-12
216591000336	PS01081 Bacterial regulatory proteins, tetR family signature.
216591000337	Predicted helix-turn-helix motif with score 1231.000, SD 3.38 at aa 55-76, sequence ATIREIAAVAGVSIGTFYEYFG
216591000338	putative aminotransferase; Provisional; Region: PRK12414
216591000339	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591000340	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591000341	homodimer interface [polypeptide binding]; other site
216591000342	catalytic residue [active]
216591000343	HMMPfam hit to PF00155, Aminotransferase class I and II, score 2.3e-59
216591000344	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591000345	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591000346	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591000347	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-31
216591000348	lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096
216591000349	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591000350	substrate binding pocket [chemical binding]; other site
216591000351	membrane-bound complex binding site; other site
216591000352	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 6.3e-75
216591000353	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591000354	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
216591000355	FAD binding domain; Region: FAD_binding_4; pfam01565
216591000356	HMMPfam hit to PF01565, FAD binding domain, score 3.6e-47
216591000357	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591000358	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 2e-48
216591000359	Predicted transcriptional regulators [Transcription]; Region: COG1695
216591000360	Transcriptional regulator PadR-like family; Region: PadR; cl17335
216591000361	HMMPfam hit to PF03551, Transcriptional regulator PadR-like family, score 6.4e-09
216591000362	Cd(II)/Pb(II)-responsive transcriptional regulator; Region: CadR-PbrR; TIGR02047
216591000363	Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators; Region: HTH_CadR-PbrR; cd04784
216591000364	DNA binding residues [nucleotide binding]
216591000365	dimer interface [polypeptide binding]; other site
216591000366	putative metal binding site [ion binding]; other site
216591000367	HMMPfam hit to PF00376, MerR family regulatory protein, score 4.3e-12
216591000368	PS00552 Bacterial regulatory proteins, merR family signature.
216591000369	Predicted helix-turn-helix motif with score 1631.000, SD 4.74 at aa 1-22, sequence MKIGELAKAARCTPETIRFYEK
216591000370	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217
216591000371	Heavy-metal-associated domain; Region: HMA; pfam00403
216591000372	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
216591000373	6 probable transmembrane helices predicted for BCAL0055 by TMHMM2.0 at aa 104-126, 146-168, 308-330, 345-367, 650-672 and 677-699
216591000374	HMMPfam hit to PF00122, E1-E2 ATPase, score 6.2e-91
216591000375	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1.1e-33
216591000376	PS00154 E1-E2 ATPases phosphorylation site.
216591000377	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000378	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591000379	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591000380	GyrI-like small molecule binding domain; Region: GyrI-like; pfam06445
216591000381	HMMPfam hit to PF06445, Bacterial transcription activator, effect, score 6.3e-41
216591000382	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pro, score 6.4e-05
216591000383	PS00041 Bacterial regulatory proteins, araC family signature.
216591000384	Conserved TM helix; Region: TM_helix; pfam05552
216591000385	HMMPfam hit to PF05552, Conserved TM helix, score 5.2e-13
216591000386	11 probable transmembrane helices predicted for BCAL0057 by TMHMM2.0 at aa 34-56, 77-99, 119-141, 175-197, 207-229, 262-284, 299-321, 358-377, 397-416, 429-448 and 458-480
216591000387	HMMPfam hit to PF05552, Conserved TM helix, score 1.3e-11
216591000388	HMMPfam hit to PF05552, Conserved TM helix, score 2.7e-16
216591000389	HMMPfam hit to PF05552, Conserved TM helix, score 1.2e-11
216591000390	ethanolamine permease; Region: 2A0305; TIGR00908
216591000391	hypothetical protein; Provisional; Region: PHA02764
216591000392	12 probable transmembrane helices predicted for BCAL0058 by TMHMM2.0 at aa 28-50, 54-76, 102-124, 139-161, 168-190, 205-227, 240-262, 292-314, 342-359, 374-396, 409-431 and 436-453
216591000393	HMMPfam hit to PF00324, Amino acid permease, score 1.1e-07
216591000394	ethanolamine ammonia lyase large subunit; Provisional; Region: PRK15067
216591000395	Ethanolamine ammonia lyase large subunit (EutB); Region: EutB; pfam06751
216591000396	HMMPfam hit to PF06751, Ethanolamine ammonia lyase large subunit (Eu, score 0
216591000397	ethanolamine ammonia-lyase small subunit; Provisional; Region: PRK05465
216591000398	HMMPfam hit to PF05985, Ethanolamine ammonia-lyase light chain (EutC, score 7.7e-112
216591000399	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591000400	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591000401	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_7; cd08476
216591000402	putative effector binding pocket; other site
216591000403	putative dimerization interface [polypeptide binding]; other site
216591000404	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.2e-58
216591000405	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 9.8e-16
216591000406	PS00044 Bacterial regulatory proteins, lysR family signature.
216591000407	Predicted helix-turn-helix motif with score 1053.000, SD 2.77 at aa 17-38, sequence LSFVAAGRALGISASAVGKTIA
216591000408	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591000409	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591000410	14 probable transmembrane helices predicted for BCAL0062 by TMHMM2.0 at aa 19-41, 56-78, 87-109, 113-132, 145-167, 172-191, 203-225, 235-254, 274-296, 311-328, 333-355, 370-392, 413-435 and 485-504
216591000411	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.9e-48
216591000412	PS00216 Sugar transport proteins signature 1.
216591000413	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000414	Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381
216591000415	HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase, score 1.2e-10
216591000416	Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like; Region: ALDH_ACDHII-AcoD; cd07116
216591000417	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591000418	NAD(P) binding site [chemical binding]; other site
216591000419	catalytic residues [active]
216591000420	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.7e-224
216591000421	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000422	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591000423	PS00070 Aldehyde dehydrogenases cysteine active site.
216591000424	Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381
216591000425	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591000426	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591000427	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00013
216591000428	Predicted helix-turn-helix motif with score 1472.000, SD 4.20 at aa 256-277, sequence VGVPELCEQLHVSRRTLQYCFQ
216591000429	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00029
216591000430	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
216591000431	thiamine pyrophosphate protein; Validated; Region: PRK08199
216591000432	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591000433	PYR/PP interface [polypeptide binding]; other site
216591000434	dimer interface [polypeptide binding]; other site
216591000435	TPP binding site [chemical binding]; other site
216591000436	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591000437	Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cd00568
216591000438	TPP-binding site [chemical binding]; other site
216591000439	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 7.2e-55
216591000440	PS00187 Thiamine pyrophosphate enzymes signature.
216591000441	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 4.3e-07
216591000442	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 3.3e-49
216591000443	Plasmid stabilisation system protein; Region: Plasmid_stabil; pfam05016
216591000444	HMMPfam hit to PF05016, Plasmid stabilisation system protein, score 1.3e-21
216591000445	L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720
216591000446	Serine dehydratase beta chain; Region: SDH_beta; pfam03315
216591000447	Serine dehydratase alpha chain; Region: SDH_alpha; pfam03313
216591000448	HMMPfam hit to PF03313, Serine dehydratase alpha chain, score 5.4e-170
216591000449	HMMPfam hit to PF03315, Serine dehydratase beta chain, score 4.9e-71
216591000450	Alginate lyase; Region: Alginate_lyase; pfam05426
216591000451	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000452	1 probable transmembrane helix predicted for BCAL0072 by TMHMM2.0 at aa 20-42
216591000453	glycine dehydrogenase; Provisional; Region: PRK05367
216591000454	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591000455	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591000456	catalytic residue [active]
216591000457	Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1; Region: GDC-P; cd00613
216591000458	tetramer interface [polypeptide binding]; other site
216591000459	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591000460	catalytic residue [active]
216591000461	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.0039
216591000462	HMMPfam hit to PF02347, Glycine cleavage system P-protein, score 1.9e-247
216591000463	Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and...; Region: GCS_H; cd06848
216591000464	lipoyl attachment site [posttranslational modification]; other site
216591000465	HMMPfam hit to PF01597, Glycine cleavage H-protein, score 8.5e-54
216591000466	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
216591000467	glycine cleavage system aminomethyltransferase T; Reviewed; Region: gcvT; PRK00389
216591000468	Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669
216591000469	HMMPfam hit to PF01571, Glycine cleavage T-protein (aminomethyl tran, score 3.3e-109
216591000470	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000471	putative oxidoreductase; Provisional; Region: PRK11579
216591000472	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
216591000473	HMMPfam hit to PF02894, Oxidoreductase family, C-terminal alph, score 6.2e-17
216591000474	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Ros, score 1.9e-30
216591000475	SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it...; Region: FeeA_FeeB_like; cd01836
216591000476	active site
216591000477	catalytic triad [active]
216591000478	oxyanion hole [active]
216591000479	ATP-dependent DNA helicase Rep; Region: rep; TIGR01074
216591000480	Part of AAA domain; Region: AAA_19; pfam13245
216591000481	Family description; Region: UvrD_C_2; pfam13538
216591000482	HMMPfam hit to PF00580, UvrD/REP helicase, score 2.2e-185
216591000483	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000484	Cytochrome c5 [Energy production and conversion]; Region: CycB; COG3245
216591000485	Cytochrome c5 [Energy production and conversion]; Region: CycB; COG3245
216591000486	HMMPfam hit to PF00034, Cytochrome c, score 0.0011
216591000487	PS00190 Cytochrome c family heme-binding site signature.
216591000488	HMMPfam hit to PF00034, Cytochrome c, score 0.00049
216591000489	PS00190 Cytochrome c family heme-binding site signature.
216591000490	1 probable transmembrane helix predicted for BCAL0080 by TMHMM2.0 at aa 15-37
216591000491	BcenGI1
216591000492	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
216591000493	active site
216591000494	DNA binding site [nucleotide binding]
216591000495	Int/Topo IB signature motif; other site
216591000496	HMMPfam hit to PF00589, Phage integrase family, score 1.5e-34
216591000497	Helix-turn-helix domain; Region: HTH_17; pfam12728
216591000498	DNA primase domain-containing protein; Region: PHA02415
216591000499	TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_primases; cd01029
216591000500	active site
216591000501	metal binding site [ion binding]; metal-binding site
216591000502	interdomain interaction site; other site
216591000503	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000504	Ogr/Delta-like zinc finger; Region: Ogr_Delta; pfam04606
216591000505	HMMPfam hit to PF04606, Ogr/Delta-like zinc finger, score 6.2e-22
216591000506	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591000507	non-specific DNA binding site [nucleotide binding]; other site
216591000508	salt bridge; other site
216591000509	sequence-specific DNA binding site [nucleotide binding]; other site
216591000510	IBS2?
216591000511	IBS1?
216591000512	Group II intron - EBS2
216591000513	Group II intron - EBS1?
216591000514	RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651
216591000515	Reverse transcriptase (RNA-dependent DNA polymerase); Region: RVT_1; pfam00078
216591000516	putative active site [active]
216591000517	putative NTP binding site [chemical binding]; other site
216591000518	putative nucleic acid binding site [nucleotide binding]; other site
216591000519	HMMPfam hit to PF00078, Reverse transcriptase (RNA-dependent DNA pol, score 1.5e-62
216591000520	tail protein; Provisional; Region: D; PHA02561
216591000521	HMMPfam hit to PF05954, Phage late control gene D protein (GPD), score 1.2e-151
216591000522	Phage P2 GpU; Region: Phage_P2_GpU; pfam06995
216591000523	HMMPfam hit to PF06995, Phage P2 GpU, score 1e-51
216591000524	2 probable transmembrane helices predicted for BCAL0091 by TMHMM2.0 at aa 571-593 and 614-636
216591000525	Phage P2 GpE; Region: Phage_P2_GpE; pfam06528
216591000526	HMMPfam hit to PF06528, Phage P2 GpE, score 4.5e-15
216591000527	Mu-like prophage FluMu protein gp41; Region: FluMu_gp41; pfam10109
216591000528	HMMPfam hit to PF06158, Phage tail protein E, score 7.1e-40
216591000529	major tail tube protein; Provisional; Region: FII; PHA02600
216591000530	HMMPfam hit to PF04985, Phage tail tube protein FII, score 4.1e-82
216591000531	major tail sheath protein; Provisional; Region: FI; PHA02560
216591000532	HMMPfam hit to PF04984, Phage tail sheath protein, score 4.9e-164
216591000533	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
216591000534	long tail fiber, proximal subunit; Provisional; Region: 34; PHA02584
216591000535	HMMPfam hit to PF07484, Phage Tail Collar Domain, score 5.3e-07
216591000536	Phage tail protein (Tail_P2_I); Region: Tail_P2_I; pfam09684
216591000537	Baseplate J-like protein; Region: Baseplate_J; cl01294
216591000538	HMMPfam hit to PF04865, Baseplate J-like protein, score 3.9e-81
216591000539	Gene 25-like lysozyme; Region: GPW_gp25; cl01403
216591000540	HMMPfam hit to PF04965, GPW / gp25 family, score 1.1e-26
216591000541	phage baseplate assembly protein V; Region: phage_P2_V; TIGR01644
216591000542	Phage P2 baseplate assembly protein gpV [General function prediction only]; Region: gpV; COG4540
216591000543	HMMPfam hit to PF04717, Phage-related baseplate assembly protein, score 2.5e-39
216591000544	P2 phage tail completion protein R (GpR); Region: P2_Phage_GpR; pfam06891
216591000545	HMMPfam hit to PF06891, P2 phage tail completion protein R (GpR), score 5.9e-39
216591000546	phage lysis regulatory protein, LysB family; Region: phage_LysB; TIGR03495
216591000547	1 probable transmembrane helix predicted for BCAL0103 by TMHMM2.0 at aa 5-27
216591000548	Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]; Region: COG3409
216591000549	Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471
216591000550	Protein of unknown function (DUF3380); Region: DUF3380; pfam11860
216591000551	HMMPfam hit to PF01471, Putative peptidoglycan binding domain, score 1.7e-17
216591000552	Protein of unknown function (DUF754); Region: DUF754; pfam05449
216591000553	HMMPfam hit to PF05449, Protein of unknown function (DUF754), score 1.4e-17
216591000554	3 probable transmembrane helices predicted for BCAL0105 by TMHMM2.0 at aa 4-23, 35-54 and 59-81
216591000555	3 probable transmembrane helices predicted for BCAL0106 by TMHMM2.0 at aa 20-42, 54-76 and 81-98
216591000556	Phage Tail Protein X; Region: Phage_tail_X; pfam05489
216591000557	HMMPfam hit to PF05489, Phage Tail Protein X, score 1.2e-25
216591000558	Uncharacterized conserved protein [Function unknown]; Region: COG4278
216591000559	TIGR04222 domain; Region: near_uncomplex
216591000560	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000561	4 probable transmembrane helices predicted for BCAL0108 by TMHMM2.0 at aa 217-239, 363-380, 385-404 and 460-482
216591000562	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000563	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591000564	TPR motif; other site
216591000565	binding surface
216591000566	TPR repeat; Region: TPR_11; pfam13414
216591000567	TPR repeat; Region: TPR_11; pfam13414
216591000568	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591000569	binding surface
216591000570	TPR motif; other site
216591000571	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
216591000572	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 9.2e-06
216591000573	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.019
216591000574	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.4
216591000575	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.0085
216591000576	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 2.5e-06
216591000577	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.023
216591000578	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 1.7e-07
216591000579	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 5.9e-09
216591000580	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 9.6e-05
216591000581	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000582	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
216591000583	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
216591000584	inhibitor-cofactor binding pocket; inhibition site
216591000585	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591000586	catalytic residue [active]
216591000587	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 1.3e-100
216591000588	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.00017
216591000589	Tetratricopeptide repeat; Region: TPR_16; pfam13432
216591000590	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591000591	TPR motif; other site
216591000592	binding surface
216591000593	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]; Region: Spy; COG3914
216591000594	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591000595	TPR motif; other site
216591000596	binding surface
216591000597	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
216591000598	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.028
216591000599	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 3e-06
216591000600	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.33
216591000601	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.0049
216591000602	flagellar capping protein; Reviewed; Region: fliD; PRK08032
216591000603	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
216591000604	HMMPfam hit to PF07195, Flagellar hook-associated protein, score 1.6e-59
216591000605	HMMPfam hit to PF07196, Flagellin hook IN motif, score 2.7e-07
216591000606	HMMPfam hit to PF02465, Flagellar hook-associated protein, score 4.1e-18
216591000607	flagellin; Reviewed; Region: PRK08869
216591000608	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
216591000609	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
216591000610	HMMPfam hit to PF00700, Bacterial flagellin C-terminus, score 2.8e-15
216591000611	HMMPfam hit to PF00669, Bacterial flagellin N-terminus, score 2.9e-63
216591000612	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
216591000613	HMMPfam hit to PF01165, Ribosomal protein S21, score 3.6e-31
216591000614	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
216591000615	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591000616	N-terminal plug; other site
216591000617	ligand-binding site [chemical binding]; other site
216591000618	HMMPfam hit to PF00593, TonB dependent receptor, score 4e-23
216591000619	PS01156 TonB-dependent receptor proteins signature 2.
216591000620	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000621	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 8.6e-15
216591000622	Uncharacterized iron-regulated membrane protein [Function unknown]; Region: PiuB; COG3182
216591000623	PepSY-associated TM helix; Region: PepSY_TM_3; pfam13706
216591000624	PepSY-associated TM helix; Region: PepSY_TM_2; pfam13703
216591000625	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.18
216591000626	5 probable transmembrane helices predicted for BCAL0117 by TMHMM2.0 at aa 25-47, 161-183, 223-245, 295-317 and 375-397
216591000627	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.1
216591000628	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.0053
216591000629	Methyladenine glycosylase; Region: Adenine_glyco; pfam03352
216591000630	HMMPfam hit to PF03352, Methyladenine glycosylase, score 6.7e-93
216591000631	BadF/BadG/BcrA/BcrD ATPase family; Region: BcrAD_BadFG; cl17271
216591000632	HMMPfam hit to PF01869, BadF/BadG/BcrA/BcrD ATPase family, score 3.5e-26
216591000633	putative hydrolase; Provisional; Region: PRK10976
216591000634	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591000635	active site
216591000636	motif I; other site
216591000637	motif II; other site
216591000638	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
216591000639	HMMPfam hit to PF05116, Sucrose-6F-phosphate phosphohydrolase, score 7.1e-06
216591000640	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 0.00014
216591000641	PS01228 Hypothetical cof family signature 1.
216591000642	HMMPfam hit to PF08282, haloacid dehalogenase-like hydrolase, score 7.2e-65
216591000643	Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal...; Region: MIP; cd00333
216591000644	amphipathic channel; other site
216591000645	Asn-Pro-Ala signature motifs; other site
216591000646	6 probable transmembrane helices predicted for BCAL0121 by TMHMM2.0 at aa 7-29, 34-56, 83-105, 130-152, 159-181 and 208-230
216591000647	HMMPfam hit to PF00230, Major intrinsic protein, score 1.1e-41
216591000648	PS00221 MIP family signature.
216591000649	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000650	H-NS histone family; Region: Histone_HNS; pfam00816
216591000651	HMMPfam hit to PF00816, H-NS histone family, score 1.5e-18
216591000652	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591000653	This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant...; Region: GT1_AviGT4_like; cd03802
216591000654	putative ADP-binding pocket [chemical binding]; other site
216591000655	HMMPfam hit to PF00534, Glycosyl transferases group, score 4e-22
216591000656	transcriptional activator FlhD; Provisional; Region: PRK02909
216591000657	HMMPfam hit to PF05247, Flagellar transcriptional activator (FlhD), score 4.9e-47
216591000658	transcriptional activator FlhC; Provisional; Region: PRK12722
216591000659	HMMPfam hit to PF05280, Flagellar transcriptional activator (FlhC), score 7.2e-129
216591000660	Flagellar motor component [Cell motility and secretion]; Region: MotA; COG1291
216591000661	flagellar motor protein MotA; Validated; Region: PRK09110
216591000662	4 probable transmembrane helices predicted for BCAL0126 by TMHMM2.0 at aa 2-24, 29-51, 171-190 and 205-227
216591000663	PS01307 Flagellar motor protein motA family signature.
216591000664	Membrane MotB of proton-channel complex MotA/MotB; Region: MotB_plug; pfam13677
216591000665	Flagellar motor protein [Cell motility and secretion]; Region: MotB; COG1360
216591000666	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591000667	ligand binding site [chemical binding]; other site
216591000668	1 probable transmembrane helix predicted for BCAL0127 by TMHMM2.0 at aa 28-47
216591000669	HMMPfam hit to PF00691, OmpA family, score 3.2e-26
216591000670	Response regulator receiver domain; Region: Response_reg; pfam00072
216591000671	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591000672	active site
216591000673	phosphorylation site [posttranslational modification]
216591000674	intermolecular recognition site; other site
216591000675	dimerization interface [polypeptide binding]; other site
216591000676	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.7e-30
216591000677	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
216591000678	putative binding surface; other site
216591000679	active site
216591000680	CheY binding; Region: CheY-binding; pfam09078
216591000681	Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895
216591000682	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591000683	ATP binding site [chemical binding]; other site
216591000684	Mg2+ binding site [ion binding]; other site
216591000685	G-X-G motif; other site
216591000686	CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731
216591000687	HMMPfam hit to PF01627, Hpt domain, score 4.6e-17
216591000688	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
216591000689	HMMPfam hit to PF02895, Signal transducing histidine kinase, hom, score 2.7e-24
216591000690	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 2.6e-26
216591000691	HMMPfam hit to PF01584, CheW-like domain, score 1.8e-24
216591000692	CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cl00256
216591000693	HMMPfam hit to PF01584, CheW-like domain, score 5.9e-35
216591000694	Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_1; pfam12729
216591000695	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
216591000696	dimer interface [polypeptide binding]; other site
216591000697	ligand binding site [chemical binding]; other site
216591000698	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591000699	dimerization interface [polypeptide binding]; other site
216591000700	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591000701	dimer interface [polypeptide binding]; other site
216591000702	putative CheW interface [polypeptide binding]; other site
216591000703	2 probable transmembrane helices predicted for BCAL0131 by TMHMM2.0 at aa 10-32 and 190-212
216591000704	HMMPfam hit to PF00672, HAMP domain, score 6.7e-13
216591000705	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 3.8e-99
216591000706	chemotaxis methyltransferase CheR; Provisional; Region: PRK10611
216591000707	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
216591000708	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591000709	HMMPfam hit to PF01739, CheR methyltransferase, SAM binding domain, score 1.8e-72
216591000710	chemoreceptor glutamine deamidase CheD; Provisional; Region: PRK13489
216591000711	HMMPfam hit to PF03975, CheD, score 9.6e-40
216591000712	chemotaxis-specific methylesterase; Provisional; Region: PRK00742
216591000713	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591000714	active site
216591000715	phosphorylation site [posttranslational modification]
216591000716	intermolecular recognition site; other site
216591000717	dimerization interface [polypeptide binding]; other site
216591000718	CheB methylesterase; Region: CheB_methylest; pfam01339
216591000719	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.9e-30
216591000720	HMMPfam hit to PF01339, CheB methylesterase, score 5.1e-107
216591000721	chemotaxis regulatory protein CheY; Provisional; Region: PRK10610
216591000722	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591000723	active site
216591000724	phosphorylation site [posttranslational modification]
216591000725	intermolecular recognition site; other site
216591000726	dimerization interface [polypeptide binding]; other site
216591000727	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.1e-43
216591000728	chemotaxis regulator CheZ; Provisional; Region: PRK11166
216591000729	HMMPfam hit to PF04344, Chemotaxis phosphatase, CheZ, score 3.2e-69
216591000730	Protein of unknown function (DUF2844); Region: DUF2844; pfam11005
216591000731	Gly/Ala/Ser-rich lipoprotein (pseudogene);CDS contains a nonsense mutation (amber) after codon 47. Similar to Burkholderia pseudomallei Gly/Ala/Ser-rich lipoprotein UniProt:Q63PS6 (EMBL:BX571965) (434 aa) fasta scores: E()=2.6e-79, 55.909% id in 440 aa
216591000732	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591000733	Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates; Region: PhnB_like; cd06588
216591000734	dimer interface [polypeptide binding]; other site
216591000735	HMMPfam hit to PF06983, 3-demethylubiquinone-9 3-methyltransfera, score 2e-71
216591000736	flagellar biosynthesis protein FlhB; Reviewed; Region: flhB; PRK05702
216591000737	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257
216591000738	HMMPfam hit to PF01312, FlhB HrpN YscU SpaS Family, score 2.9e-140
216591000739	4 probable transmembrane helices predicted for BCAL0140 by TMHMM2.0 at aa 33-55, 94-116, 146-165 and 185-207
216591000740	flagellar biosynthesis protein FlhA; Validated; Region: flhA; PRK06012
216591000741	FHIPEP family; Region: FHIPEP; pfam00771
216591000742	7 probable transmembrane helices predicted for BCAL0141 by TMHMM2.0 at aa 21-40, 44-66, 78-100, 120-142, 211-233, 253-275 and 296-318
216591000743	HMMPfam hit to PF00771, FHIPEP family, score 0
216591000744	PS00994 Bacterial export FHIPEP family signature.
216591000745	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591000746	flagellar biosynthetic protein FlhF; Region: FlhF; TIGR03499
216591000747	SRP54-type protein, GTPase domain; Region: SRP54; smart00962
216591000748	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
216591000749	HMMPfam hit to PF00448, SRP54-type protein, GTPase domain, score 2.6e-23
216591000750	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000751	Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]; Region: flhG; COG0455
216591000752	FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by...; Region: FleN-like; cd02038
216591000753	P-loop; other site
216591000754	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000755	flagellar biosynthesis sigma factor; Validated; Region: fliA; PRK06986
216591000756	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591000757	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
216591000758	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591000759	DNA binding residues [nucleotide binding]
216591000760	HMMPfam hit to PF04542, Sigma-70 region, score 1.9e-18
216591000761	PS00715 Sigma-70 factors family signature 1.
216591000762	HMMPfam hit to PF04539, Sigma-70 region, score 2.1e-09
216591000763	HMMPfam hit to PF08281, Sigma-70, region, score 5.4e-07
216591000764	HMMPfam hit to PF04545, Sigma-70, region, score 7.1e-17
216591000765	Predicted helix-turn-helix motif with score 1243.000, SD 3.42 at aa 202-223, sequence LNLREIGAVLEVSESRVCQLHS
216591000766	PS00716 Sigma-70 factors family signature 2.
216591000767	S-adenosyl-L-homocysteine hydrolase; Provisional; Region: PRK05476
216591000768	S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains; Region: SAHH; cd00401
216591000769	homotetramer interface [polypeptide binding]; other site
216591000770	ligand binding site [chemical binding]; other site
216591000771	catalytic site [active]
216591000772	NAD binding site [chemical binding]; other site
216591000773	HMMPfam hit to PF05221, S-adenosyl-L-homocysteine hydrolase, score 3.7e-193
216591000774	PS00738 S-adenosyl-L-homocysteine hydrolase signature 1.
216591000775	HMMPfam hit to PF00670, S-adenosyl-L-homocysteine hydrolase, NA, score 1.3e-111
216591000776	PS00739 S-adenosyl-L-homocysteine hydrolase signature 2.
216591000777	Predicted membrane protein [Function unknown]; Region: COG1950
216591000778	HMMPfam hit to PF04020, Membrane protein of unknown function, score 6.6e-37
216591000779	4 probable transmembrane helices predicted for BCAL0146 by TMHMM2.0 at aa 4-26, 33-55, 59-81 and 88-110
216591000780	Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase...; Region: MTHFR; cd00537
216591000781	FAD binding site [chemical binding]; other site
216591000782	HMMPfam hit to PF02219, Methylenetetrahydrofolate reductase, score 1.4e-107
216591000783	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154
216591000784	Amidase; Region: Amidase; cl11426
216591000785	HMMPfam hit to PF01425, Amidase, score 2.4e-79
216591000786	PS00571 Amidases signature.
216591000787	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000788	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
216591000789	HMMPfam hit to PF01738, Dienelactone hydrolase family, score 2.7e-68
216591000790	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
216591000791	FMN binding site [chemical binding]; other site
216591000792	substrate binding site [chemical binding]; other site
216591000793	putative catalytic residue [active]
216591000794	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, score 1.9e-84
216591000795	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591000796	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591000797	dimerization interface [polypeptide binding]; other site
216591000798	ligand binding site [chemical binding]; other site
216591000799	HMMPfam hit to PF01094, Receptor family ligand binding region, score 1.5e-68
216591000800	12 probable transmembrane helices predicted for BCAL0152 by TMHMM2.0 at aa 42-64, 79-101, 108-125, 129-148, 169-191, 195-217, 237-256, 266-288, 300-322, 327-349, 362-384 and 389-411
216591000801	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.5e-16
216591000802	Pyridoxamine 5'-phosphate oxidase; Region: Pyrid_oxidase_2; pfam13883
216591000803	Protein of unknown function (DUF2470); Region: DUF2470; pfam10615
216591000804	HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase, score 1.2e-10
216591000805	H-NS histone family; Region: Histone_HNS; pfam00816
216591000806	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
216591000807	HMMPfam hit to PF00816, H-NS histone family, score 3.9e-20
216591000808	Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053
216591000809	Cation efflux family; Region: Cation_efflux; pfam01545
216591000810	HMMPfam hit to PF01545, Cation efflux family, score 3.6e-73
216591000811	3 probable transmembrane helices predicted for BCAL0155 by TMHMM2.0 at aa 21-43, 88-107 and 114-136
216591000812	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591000813	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591000814	putative DNA binding site [nucleotide binding]; other site
216591000815	putative Zn2+ binding site [ion binding]; other site
216591000816	AsnC family; Region: AsnC_trans_reg; pfam01037
216591000817	HMMPfam hit to PF01037, AsnC family, score 8.9e-33
216591000818	PS00519 Bacterial regulatory proteins, asnC family signature.
216591000819	Predicted helix-turn-helix motif with score 1034.000, SD 2.71 at aa 24-45, sequence RSVQEISDQVGLSSTPCWRRIK
216591000820	active site
216591000821	catalytic site [active]
216591000822	substrate binding site [chemical binding]; other site
216591000823	DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; Region: DnaQ_like_exo; cl10012
216591000824	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
216591000825	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 1.8e-37
216591000826	Lipoproteins [Cell envelope biogenesis, outer membrane]; Region: RlpA; COG0797
216591000827	Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; pfam03330
216591000828	HMMPfam hit to PF03330, Rare lipoprotein A (RlpA)-like double-psi be, score 7.4e-40
216591000829	Predicted methyltransferases [General function prediction only]; Region: COG0313
216591000830	Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI; Region: RsmI; cd11648
216591000831	putative SAM binding site [chemical binding]; other site
216591000832	putative homodimer interface [polypeptide binding]; other site
216591000833	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 3.1e-43
216591000834	PS01296 Uncharacterized protein family UPF0011 signature.
216591000835	hypothetical protein; Provisional; Region: PRK14673
216591000836	HMMPfam hit to PF02021, Uncharacterised protein family UPF0102, score 3e-26
216591000837	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
216591000838	active site
216591000839	dimer interface [polypeptide binding]; other site
216591000840	outer membrane lipoprotein; Provisional; Region: PRK11023
216591000841	BON domain; Region: BON; pfam04972
216591000842	BON domain; Region: BON; cl02771
216591000843	1 probable transmembrane helix predicted for BCAL0163 by TMHMM2.0 at aa 21-43
216591000844	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000845	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 5.4e-13
216591000846	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 0.00011
216591000847	Cytochrome c; Region: Cytochrom_C; cl11414
216591000848	1 probable transmembrane helix predicted for BCAL0164 by TMHMM2.0 at aa 13-35
216591000849	HMMPfam hit to PF00034, Cytochrome c, score 6.5e-07
216591000850	PS00190 Cytochrome c family heme-binding site signature.
216591000851	BcenGI2
216591000852	Replication initiator protein A; Region: RPA; pfam10134
216591000853	Predicted helix-turn-helix motif with score 1060.000, SD 2.80 at aa 221-242, sequence RRIYELACKHCGNQPTWKSSIA
216591000854	putative transposase OrfB; Reviewed; Region: PHA02517
216591000855	HTH-like domain; Region: HTH_21; pfam13276
216591000856	Integrase core domain; Region: rve; pfam00665
216591000857	Integrase core domain; Region: rve_2; pfam13333
216591000858	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591000859	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591000860	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591000861	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591000862	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591000863	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591000864	hypothetical protein (fragment)
216591000865	conjugal transfer relaxosome component TraJ; Provisional; Region: PRK13877
216591000866	conjugal transfer protein TrbJ; Provisional; Region: PRK13879
216591000867	P-type conjugative transfer protein TrbL; Region: TrbL_P; TIGR02783
216591000868	8 probable transmembrane helices predicted for BCAL0174 by TMHMM2.0 at aa 68-87, 107-129, 150-172, 218-240, 242-264, 274-296, 303-325 and 335-357
216591000869	HMMPfam hit to PF04610, TrbL/VirB6 plasmid conjugal transfer protein, score 1e-12
216591000870	Toxin of toxin-antitoxin type 1 system; Region: plasmid_Toxin; pfam12703
216591000871	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl17200
216591000872	non-specific DNA binding site [nucleotide binding]; other site
216591000873	salt bridge; other site
216591000874	sequence-specific DNA binding site [nucleotide binding]; other site
216591000875	Antidote-toxin recognition MazE; Region: Antitoxin-MazE; cl00877
216591000876	Site-specific DNA methylase [DNA replication, recombination, and repair]; Region: Dam; COG0338
216591000877	HMMPfam hit to PF02086, D12 class N6 adenine-specific DNA met, score 0.0013
216591000878	PS00092 N-6 Adenine-specific DNA methylases signature.
216591000879	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from archaea and bacteria; Region: NTP-PPase_COG4997; cd11532
216591000880	metal binding site [ion binding]; metal-binding site
216591000881	Predicted helix-turn-helix motif with score 1098.000, SD 2.93 at aa 115-136, sequence TTVTDLARALEICLRQISSSLS
216591000882	lipid transporter ATP-binding/permease protein; Provisional; Region: PRK11176
216591000883	4 probable transmembrane helices predicted for BCAL0180 by TMHMM2.0 at aa 94-116, 131-153, 166-188 and 192-214
216591000884	HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis...; Region: HIT_like; cl00228
216591000885	nucleotide binding site/active site [active]
216591000886	HIT family signature motif; other site
216591000887	catalytic residue [active]
216591000888	integrase; Provisional; Region: int; PHA02601
216591000889	Rci recombinase, C-terminal catalytic domain.  Rci enzymes are found in IncI1 incompatibility group plasmids such as R64.  These recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain...; Region: INT_Rci; cd00796
216591000890	catalytic residues [active]
216591000891	Int/Topo IB signature motif; other site
216591000892	HMMPfam hit to PF00589, Phage integrase family, score 3e-28
216591000893	glucarate dehydratase; Region: glucar-dehydr; TIGR03247
216591000894	D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes; Region: D-glucarate_dehydratase; cd03323
216591000895	active site
216591000896	tetramer interface [polypeptide binding]; other site
216591000897	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591000898	D-galactonate transporter; Region: 2A0114; TIGR00893
216591000899	putative substrate translocation pore; other site
216591000900	10 probable transmembrane helices predicted for BCAL0184 by TMHMM2.0 at aa 23-45, 60-82, 95-117, 179-201, 254-276, 291-313, 325-347, 351-373, 386-408 and 418-440
216591000901	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.2e-55
216591000902	LysR family transcriptional regulator; Provisional; Region: PRK14997
216591000903	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591000904	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591000905	putative effector binding pocket; other site
216591000906	dimerization interface [polypeptide binding]; other site
216591000907	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.7e-44
216591000908	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000909	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.5e-18
216591000910	PS00044 Bacterial regulatory proteins, lysR family signature.
216591000911	Predicted helix-turn-helix motif with score 1533.000, SD 4.41 at aa 21-42, sequence GSMSAAARRLDLPKSTVSKRVA
216591000912	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591000913	GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens; Region: GST_N_Beta; cd03057
216591000914	C-terminal domain interface [polypeptide binding]; other site
216591000915	GSH binding site (G-site) [chemical binding]; other site
216591000916	dimer interface [polypeptide binding]; other site
216591000917	C-terminal, alpha helical domain of the Glutathione S-transferase family; Region: GST_C_family; cl02776
216591000918	N-terminal domain interface [polypeptide binding]; other site
216591000919	dimer interface [polypeptide binding]; other site
216591000920	substrate binding pocket (H-site) [chemical binding]; other site
216591000921	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 0.012
216591000922	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 1.3e-05
216591000923	Uncharacterized protein conserved in bacteria (DUF2239); Region: DUF2239; pfam09998
216591000924	Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3670
216591000925	Retinal pigment epithelial membrane protein; Region: RPE65; pfam03055
216591000926	HMMPfam hit to PF03055, Retinal pigment epithelial membrane protein, score 9e-87
216591000927	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
216591000928	FtsX-like permease family; Region: FtsX; pfam02687
216591000929	HMMPfam hit to PF02687, Predicted permease, score 1.9e-29
216591000930	4 probable transmembrane helices predicted for BCAL0189 by TMHMM2.0 at aa 17-39, 259-281, 301-323 and 349-371
216591000931	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000932	HMMPfam hit to PF02687, Predicted permease, score 2.2e-22
216591000933	4 probable transmembrane helices predicted for BCAL0190 by TMHMM2.0 at aa 21-43, 256-278, 299-321 and 349-371
216591000934	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
216591000935	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
216591000936	Walker A/P-loop; other site
216591000937	ATP binding site [chemical binding]; other site
216591000938	Q-loop/lid; other site
216591000939	ABC transporter signature motif; other site
216591000940	Walker B; other site
216591000941	D-loop; other site
216591000942	H-loop/switch region; other site
216591000943	HMMPfam hit to PF00005, ABC transporter, score 4e-62
216591000944	PS00211 ABC transporters family signature.
216591000945	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000946	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591000947	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591000948	HMMPfam hit to PF00529, HlyD family secretion protein, score 5.5e-05
216591000949	1 probable transmembrane helix predicted for BCAL0192 by TMHMM2.0 at aa 25-47
216591000950	1 probable transmembrane helix predicted for BCAL0193 by TMHMM2.0 at aa 5-27
216591000951	Ub domain fused to Mut7-C; Region: Ub-Mut7C; pfam14451
216591000952	Uncharacterized conserved protein [Function unknown]; Region: COG1656
216591000953	Protein of unknown function DUF82; Region: DUF82; pfam01927
216591000954	HMMPfam hit to PF01927, Protein of unknown function DUF82, score 1.8e-30
216591000955	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084
216591000956	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591000957	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 2.3e-44
216591000958	HMMPfam hit to PF03807, NADP oxidoreductase coenzyme F420-depen, score 0.00017
216591000959	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591000960	6 probable transmembrane helices predicted for BCAL0195 by TMHMM2.0 at aa 5-27, 40-62, 67-86, 121-143, 153-175 and 187-209
216591000961	HMMPfam hit to PF01810, LysE type translocator, score 4.5e-32
216591000962	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591000963	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591000964	12 probable transmembrane helices predicted for BCAL0196 by TMHMM2.0 at aa 20-42, 62-84, 91-110, 115-137, 149-171, 175-197, 226-248, 261-283, 296-318, 322-344, 365-387 and 391-413
216591000965	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4e-27
216591000966	PS00136 Serine proteases, subtilase family, aspartic acid active site.
216591000967	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591000968	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591000969	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591000970	dimerization interface [polypeptide binding]; other site
216591000971	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.4e-21
216591000972	PS00044 Bacterial regulatory proteins, lysR family signature.
216591000973	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.9e-36
216591000974	Outer membrane protein W [Cell envelope biogenesis, outer membrane]; Region: OmpW; COG3047
216591000975	HMMPfam hit to PF03922, OmpW family, score 6.6e-12
216591000976	Protein of unknown function (DUF2957); Region: DUF2957; pfam11170
216591000977	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000978	Protein of unknown function (DUF2957); Region: DUF2957; pfam11170
216591000979	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000980	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591000981	N-acetyl-gamma-glutamyl-phosphate reductase; Provisional; Region: PRK11863
216591000982	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
216591000983	PS00017 ATP/GTP-binding site motif A (P-loop).
216591000984	HMMPfam hit to PF01118, Semialdehyde dehydrogenase, NAD bindin, score 2.8e-06
216591000985	Multimeric flavodoxin WrbA [General function prediction only]; Region: WrbA; COG0655
216591000986	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591000987	HMMPfam hit to PF00258, Flavodoxin, score 0.0005
216591000988	PS00201 Flavodoxin signature.
216591000989	PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea; Region: PEBP_bact_arch; cd00865
216591000990	substrate binding site [chemical binding]; other site
216591000991	HMMPfam hit to PF01161, Phosphatidylethanolamine-binding protein, score 1.3e-06
216591000992	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591000993	active site
216591000994	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 3.9e-17
216591000995	bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed; Region: PRK07232
216591000996	Malic enzyme, N-terminal domain; Region: malic; pfam00390
216591000997	NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311
216591000998	putative NAD(P) binding site [chemical binding]; other site
216591000999	Phosphotransacetylase [Energy production and conversion]; Region: Pta; COG0280
216591001000	HMMPfam hit to PF00390, Malic enzyme, N-terminal domain, score 3.9e-77
216591001001	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001002	HMMPfam hit to PF03949, Malic enzyme, NAD binding domain, score 1.6e-127
216591001003	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001004	HMMPfam hit to PF01515, Phosphate acetyl/butaryl transferase, score 2.1e-108
216591001005	indolepyruvate ferredoxin oxidoreductase; Validated; Region: PRK09193
216591001006	Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034
216591001007	dimer interface [polypeptide binding]; other site
216591001008	PYR/PP interface [polypeptide binding]; other site
216591001009	TPP binding site [chemical binding]; other site
216591001010	substrate binding site [chemical binding]; other site
216591001011	Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as...; Region: TPP_IOR_alpha; cd02008
216591001012	TPP-binding site; other site
216591001013	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [Energy production and conversion]; Region: PorG; COG1014
216591001014	Sfi1 spindle body protein; Region: Sfi1; pfam08457
216591001015	HMMPfam hit to PF01558, Pyruvate ferredoxin/flavodoxin oxidoreductas, score 1.1e-05
216591001016	4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]; Region: COG3185
216591001017	N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS); Region: HPPD_N_like; cd08342
216591001018	dimer interface [polypeptide binding]; other site
216591001019	C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS); Region: HPPD_C_like; cd07250
216591001020	active site
216591001021	Fe binding site [ion binding]; other site
216591001022	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 1.1e-11
216591001023	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591001024	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591001025	putative DNA binding site [nucleotide binding]; other site
216591001026	putative Zn2+ binding site [ion binding]; other site
216591001027	AsnC family; Region: AsnC_trans_reg; pfam01037
216591001028	Predicted helix-turn-helix motif with score 1496.000, SD 4.28 at aa 23-44, sequence LSNQEIAERVNLSPSPCLRRIR
216591001029	PS00519 Bacterial regulatory proteins, asnC family signature.
216591001030	HMMPfam hit to PF01037, AsnC family, score 2.7e-24
216591001031	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
216591001032	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591001033	Coenzyme A binding pocket [chemical binding]; other site
216591001034	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 5.8e-09
216591001035	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591001036	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591001037	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 7.4e-12
216591001038	Predicted helix-turn-helix motif with score 1303.000, SD 3.62 at aa 32-53, sequence TSMSDLATASGTSKARLYHYYE
216591001039	Domain of unknown function (DUF1835); Region: DUF1835; pfam08874
216591001040	Protein of unknown function; Region: DUF3658; pfam12395
216591001041	phenylacetate-CoA oxygenase/reductase, PaaK subunit; Region: PA_CoA_Oxy5; TIGR02160
216591001042	NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like...; Region: PA_degradation_oxidoreductase_like; cd06214
216591001043	FAD binding pocket [chemical binding]; other site
216591001044	FAD binding motif [chemical binding]; other site
216591001045	phosphate binding motif [ion binding]; other site
216591001046	beta-alpha-beta structure motif; other site
216591001047	NAD(p) ribose binding residues [chemical binding]; other site
216591001048	NAD binding pocket [chemical binding]; other site
216591001049	NAD(P)-pyrophosphate-nicotinamide binding residues [chemical binding]; other site
216591001050	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591001051	catalytic loop [active]
216591001052	iron binding site [ion binding]; other site
216591001053	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 7.4e-17
216591001054	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 8.6e-15
216591001055	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 2.4e-14
216591001056	Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]; Region: PaaD; COG2151
216591001057	phenylacetate-CoA oxygenase, PaaJ subunit; Region: PA_CoA_Oxy4; TIGR02159
216591001058	HMMPfam hit to PF01883, Domain of unknown function DUF59, score 6.5e-15
216591001059	Phenylacetic acid catabolic protein; Region: PaaA_PaaC; pfam05138
216591001060	HMMPfam hit to PF05138, Phenylacetic acid catabolic protein, score 9.9e-52
216591001061	phenylacetate-CoA oxygenase subunit PaaB; Provisional; Region: paaB; PRK13781
216591001062	HMMPfam hit to PF06243, Phenylacetic acid degradation B, score 8.5e-71
216591001063	phenylacetate-CoA oxygenase subunit PaaA; Provisional; Region: paaA; PRK13778
216591001064	phenylacetate-CoA oxygenase, PaaG subunit; Region: PA_CoA_Oxy1; TIGR02156
216591001065	HMMPfam hit to PF05138, Phenylacetic acid catabolic protein, score 2.9e-146
216591001066	SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases; Region: XynE_like; cd01830
216591001067	active site
216591001068	catalytic triad [active]
216591001069	oxyanion hole [active]
216591001070	HMMPfam hit to PF00657, GDSL-like Lipase/Acylhydrolase, score 1.5e-22
216591001071	elongation factor Tu; Reviewed; Region: PRK00049
216591001072	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
216591001073	G1 box; other site
216591001074	GEF interaction site [polypeptide binding]; other site
216591001075	GTP/Mg2+ binding site [chemical binding]; other site
216591001076	Switch I region; other site
216591001077	G2 box; other site
216591001078	G3 box; other site
216591001079	Switch II region; other site
216591001080	G4 box; other site
216591001081	G5 box; other site
216591001082	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
216591001083	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
216591001084	Antibiotic Binding Site [chemical binding]; other site
216591001085	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 7e-102
216591001086	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001087	PS00301 GTP-binding elongation factors signature.
216591001088	HMMPfam hit to PF03144, Elongation factor Tu domain, score 7.5e-26
216591001089	HMMPfam hit to PF03143, Elongation factor Tu C-terminal domain, score 2.5e-62
216591001090	preprotein translocase subunit SecE; Reviewed; Region: secE; PRK05740
216591001091	3 probable transmembrane helices predicted for BCAL0220 by TMHMM2.0 at aa 15-37, 49-71 and 91-110
216591001092	HMMPfam hit to PF00584, SecE/Sec61-gamma subunits of protein translo, score 3.4e-17
216591001093	transcription antitermination protein NusG; Validated; Region: nusG; PRK05609
216591001094	Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891
216591001095	putative homodimer interface [polypeptide binding]; other site
216591001096	NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus; Region: KOW_NusG; cd06091
216591001097	heterodimer interface [polypeptide binding]; other site
216591001098	homodimer interface [polypeptide binding]; other site
216591001099	HMMPfam hit to PF02357, Transcription termination factor nusG, score 1.4e-54
216591001100	HMMPfam hit to PF00467, KOW motif, score 7.1e-10
216591001101	PS01014 Transcription termination factor nusG signature.
216591001102	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
216591001103	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
216591001104	23S rRNA interface [nucleotide binding]; other site
216591001105	L7/L12 interface [polypeptide binding]; other site
216591001106	putative thiostrepton binding site; other site
216591001107	L25 interface [polypeptide binding]; other site
216591001108	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
216591001109	mRNA/rRNA interface [nucleotide binding]; other site
216591001110	HMMPfam hit to PF00687, Ribosomal protein L1p/L10e family, score 1.5e-122
216591001111	PS01199 Ribosomal protein L1 signature.
216591001112	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
216591001113	23S rRNA interface [nucleotide binding]; other site
216591001114	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
216591001115	HMMPfam hit to PF00466, Ribosomal protein L10, score 3.8e-20
216591001116	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
216591001117	peripheral dimer interface [polypeptide binding]; other site
216591001118	core dimer interface [polypeptide binding]; other site
216591001119	L10 interface [polypeptide binding]; other site
216591001120	L11 interface [polypeptide binding]; other site
216591001121	putative EF-Tu interaction site [polypeptide binding]; other site
216591001122	putative EF-G interaction site [polypeptide binding]; other site
216591001123	HMMPfam hit to PF00542, Ribosomal protein L7/L12 C-terminal dom, score 3.4e-38
216591001124	DNA-directed RNA polymerase subunit beta; Reviewed; Region: rpoB; PRK00405
216591001125	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl17585
216591001126	RNA polymerase Rpb2, domain 2; Region: RNA_pol_Rpb2_2; pfam04561
216591001127	RNA polymerase Rpb2, domain 2; Region: RNA_pol_Rpb2_2; pfam04561
216591001128	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
216591001129	RNA polymerase Rpb2, domain 6; Region: RNA_pol_Rpb2_6; pfam00562
216591001130	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
216591001131	RPB3 interaction site [polypeptide binding]; other site
216591001132	RPB1 interaction site [polypeptide binding]; other site
216591001133	RPB11 interaction site [polypeptide binding]; other site
216591001134	RPB10 interaction site [polypeptide binding]; other site
216591001135	HMMPfam hit to PF04563, RNA polymerase beta subunit, score 2e-28
216591001136	HMMPfam hit to PF04561, RNA polymerase Rpb2, domain, score 4.9e-06
216591001137	HMMPfam hit to PF04565, RNA polymerase Rpb2, domain, score 1.7e-45
216591001138	HMMPfam hit to PF00562, RNA polymerase Rpb2, domain, score 3.2e-184
216591001139	PS01166 RNA polymerases beta chain signature.
216591001140	HMMPfam hit to PF04560, RNA polymerase Rpb2, domain, score 1.3e-47
216591001141	DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086
216591001142	RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997
216591001143	RNA polymerase I subunit A N-terminus; Region: RPOLA_N; smart00663
216591001144	RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983
216591001145	RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000
216591001146	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
216591001147	Rpb1 - Rpb6 interaction site [polypeptide binding]; other site
216591001148	Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655
216591001149	DNA binding site [nucleotide binding]
216591001150	Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site
216591001151	ATP-dependent DNA helicase RecQ; Region: recQ; TIGR01389
216591001152	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591001153	ATP binding site [chemical binding]; other site
216591001154	putative Mg++ binding site [ion binding]; other site
216591001155	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591001156	nucleotide binding region [chemical binding]; other site
216591001157	ATP-binding site [chemical binding]; other site
216591001158	This DNA-binding domain is found in the RecQ helicase among others and has a helix-turn-helix structure; Region: RQC; smart00956
216591001159	HRDC domain; Region: HRDC; pfam00570
216591001160	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 3.6e-27
216591001161	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 6.8e-26
216591001162	HMMPfam hit to PF00570, HRDC domain, score 1.6e-20
216591001163	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
216591001164	S17 interaction site [polypeptide binding]; other site
216591001165	S8 interaction site; other site
216591001166	16S rRNA interaction site [nucleotide binding]; other site
216591001167	streptomycin interaction site [chemical binding]; other site
216591001168	23S rRNA interaction site [nucleotide binding]; other site
216591001169	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
216591001170	HMMPfam hit to PF00164, Ribosomal protein S12, score 2.8e-76
216591001171	PS00055 Ribosomal protein S12 signature.
216591001172	30S ribosomal protein S7; Validated; Region: PRK05302
216591001173	HMMPfam hit to PF00177, Ribosomal protein S7p/S5e, score 5.6e-82
216591001174	PS00052 Ribosomal protein S7 signature.
216591001175	elongation factor G; Reviewed; Region: PRK00007
216591001176	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
216591001177	G1 box; other site
216591001178	putative GEF interaction site [polypeptide binding]; other site
216591001179	GTP/Mg2+ binding site [chemical binding]; other site
216591001180	Switch I region; other site
216591001181	G2 box; other site
216591001182	G3 box; other site
216591001183	Switch II region; other site
216591001184	G4 box; other site
216591001185	G5 box; other site
216591001186	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
216591001187	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
216591001188	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
216591001189	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 1.2e-110
216591001190	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001191	PS00301 GTP-binding elongation factors signature.
216591001192	HMMPfam hit to PF03144, Elongation factor Tu domain, score 3.2e-21
216591001193	HMMPfam hit to PF03764, Elongation factor G, domain IV, score 3e-70
216591001194	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 1.2e-50
216591001195	elongation factor Tu; Reviewed; Region: PRK00049
216591001196	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
216591001197	G1 box; other site
216591001198	GEF interaction site [polypeptide binding]; other site
216591001199	GTP/Mg2+ binding site [chemical binding]; other site
216591001200	Switch I region; other site
216591001201	G2 box; other site
216591001202	G3 box; other site
216591001203	Switch II region; other site
216591001204	G4 box; other site
216591001205	G5 box; other site
216591001206	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
216591001207	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
216591001208	Antibiotic Binding Site [chemical binding]; other site
216591001209	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 7e-102
216591001210	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001211	PS00301 GTP-binding elongation factors signature.
216591001212	HMMPfam hit to PF03144, Elongation factor Tu domain, score 7.5e-26
216591001213	HMMPfam hit to PF03143, Elongation factor Tu C-terminal domain, score 2.5e-62
216591001214	30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596
216591001215	HMMPfam hit to PF00338, Ribosomal protein S10p/S20e, score 2.3e-51
216591001216	PS00361 Ribosomal protein S10 signature.
216591001217	50S ribosomal protein L3; Validated; Region: rplC; PRK00001
216591001218	HMMPfam hit to PF00297, Ribosomal protein L3, score 1.1e-80
216591001219	PS00474 Ribosomal protein L3 signature.
216591001220	50S ribosomal protein L4; Provisional; Region: rplD; PRK05319
216591001221	HMMPfam hit to PF00573, Ribosomal protein L4/L1 family, score 1.9e-46
216591001222	50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738
216591001223	HMMPfam hit to PF00276, Ribosomal protein L23, score 9.3e-28
216591001224	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
216591001225	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
216591001226	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
216591001227	HMMPfam hit to PF00181, Ribosomal Proteins L2, RNA binding dom, score 2.3e-47
216591001228	HMMPfam hit to PF03947, Ribosomal Proteins L2, C-terminal doma, score 8.1e-86
216591001229	PS00467 Ribosomal protein L2 signature.
216591001230	30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357
216591001231	HMMPfam hit to PF00203, Ribosomal protein S19, score 3.5e-52
216591001232	PS00323 Ribosomal protein S19 signature.
216591001233	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
216591001234	putative translocon binding site; other site
216591001235	protein-rRNA interface [nucleotide binding]; other site
216591001236	HMMPfam hit to PF00237, Ribosomal protein L22p/L17e, score 1.1e-44
216591001237	PS00464 Ribosomal protein L22 signature.
216591001238	30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310
216591001239	K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3  is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel.  The KH...; Region: 30S_S3_KH; cd02412
216591001240	G-X-X-G motif; other site
216591001241	Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189
216591001242	HMMPfam hit to PF00417, Ribosomal protein S3, N-terminal domai, score 1.3e-26
216591001243	HMMPfam hit to PF07650, KH domain, score 3.2e-22
216591001244	HMMPfam hit to PF00189, Ribosomal protein S3, C-terminal domai, score 1.4e-51
216591001245	PS00548 Ribosomal protein S3 signature.
216591001246	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001247	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
216591001248	23S rRNA interface [nucleotide binding]; other site
216591001249	5S rRNA interface [nucleotide binding]; other site
216591001250	putative antibiotic binding site [chemical binding]; other site
216591001251	L25 interface [polypeptide binding]; other site
216591001252	L27 interface [polypeptide binding]; other site
216591001253	HMMPfam hit to PF00252, Ribosomal protein L16, score 2.6e-86
216591001254	PS00586 Ribosomal protein L16 signature 1.
216591001255	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
216591001256	23S rRNA interface [nucleotide binding]; other site
216591001257	putative translocon interaction site; other site
216591001258	signal recognition particle (SRP54) interaction site; other site
216591001259	L23 interface [polypeptide binding]; other site
216591001260	trigger factor interaction site; other site
216591001261	HMMPfam hit to PF00831, Ribosomal L29 protein, score 3.2e-21
216591001262	PS00579 Ribosomal protein L29 signature.
216591001263	30S ribosomal protein S17; Reviewed; Region: rpsQ; PRK05610
216591001264	HMMPfam hit to PF00366, Ribosomal protein S17, score 1.8e-35
216591001265	PS00056 Ribosomal protein S17 signature.
216591001266	50S ribosomal protein L14; Validated; Region: rplN; PRK05483
216591001267	HMMPfam hit to PF00238, Ribosomal protein L14p/L23e, score 6.6e-76
216591001268	PS00049 Ribosomal protein L14 signature.
216591001269	50S ribosomal protein L24; Reviewed; Region: rplX; PRK00004
216591001270	KOW motif of Ribosomal Protein L26; Region: KOW_RPL26; cd06089
216591001271	RNA binding site [nucleotide binding]; other site
216591001272	HMMPfam hit to PF00467, KOW motif, score 7.1e-06
216591001273	PS01108 Ribosomal protein L24 signature.
216591001274	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
216591001275	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
216591001276	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
216591001277	HMMPfam hit to PF00281, Ribosomal protein L5, score 5.8e-31
216591001278	PS00358 Ribosomal protein L5 signature.
216591001279	HMMPfam hit to PF00673, ribosomal L5P family C-terminus, score 5.2e-50
216591001280	30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881
216591001281	HMMPfam hit to PF00253, Ribosomal protein S14p/S29e, score 1.4e-20
216591001282	30S ribosomal protein S8; Validated; Region: rpsH; PRK00136
216591001283	HMMPfam hit to PF00410, Ribosomal protein S8, score 2.2e-64
216591001284	PS00053 Ribosomal protein S8 signature.
216591001285	PS00294 Prenyl group binding site (CAAX box).
216591001286	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
216591001287	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
216591001288	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
216591001289	HMMPfam hit to PF00347, Ribosomal protein L6, score 6.7e-13
216591001290	HMMPfam hit to PF00347, Ribosomal protein L6, score 7.6e-32
216591001291	PS00525 Ribosomal protein L6 signature 1.
216591001292	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
216591001293	5S rRNA interface [nucleotide binding]; other site
216591001294	L27 interface [polypeptide binding]; other site
216591001295	23S rRNA interface [nucleotide binding]; other site
216591001296	L5 interface [polypeptide binding]; other site
216591001297	HMMPfam hit to PF00861, Ribosomal L18p/L5e family, score 3.8e-37
216591001298	30S ribosomal protein S5; Validated; Region: rpsE; PRK00550
216591001299	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
216591001300	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
216591001301	HMMPfam hit to PF00333, Ribosomal protein S5, N-terminal domai, score 3.2e-31
216591001302	PS00585 Ribosomal protein S5 signature.
216591001303	HMMPfam hit to PF03719, Ribosomal protein S5, C-terminal domai, score 3.5e-29
216591001304	Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that...; Region: Ribosomal_L30; cd01658
216591001305	23S rRNA binding site [nucleotide binding]; other site
216591001306	HMMPfam hit to PF00327, Ribosomal protein L30p/L7e, score 2.1e-13
216591001307	50S ribosomal protein L15; Reviewed; Region: rplO; PRK05592
216591001308	HMMPfam hit to PF01305, Ribosomal protein L15 amino terminal re, score 3.2e-47
216591001309	HMMPfam hit to PF00256, Ribosomal protein L15, score 8.7e-09
216591001310	PS00475 Ribosomal protein L15 signature.
216591001311	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
216591001312	SecY translocase; Region: SecY; pfam00344
216591001313	10 probable transmembrane helices predicted for BCAL0254 by TMHMM2.0 at aa 26-45, 76-98, 119-141, 151-173, 180-202, 212-234, 270-292, 319-341, 372-394 and 399-421
216591001314	HMMPfam hit to PF00344, eubacterial secY protein, score 3.2e-173
216591001315	PS00755 Protein secY signature 1.
216591001316	PS00756 Protein secY signature 2.
216591001317	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
216591001318	rRNA binding site [nucleotide binding]; other site
216591001319	predicted 30S ribosome binding site; other site
216591001320	HMMPfam hit to PF00575, S1 RNA binding domain, score 2.4e-08
216591001321	HMMPfam hit to PF01176, Translation initiation factor 1A / IF-1, score 2.7e-36
216591001322	Ribosomal protein L36; Region: Ribosomal_L36; pfam00444
216591001323	HMMPfam hit to PF00444, Ribosomal protein L36, score 1.2e-15
216591001324	PS00828 Ribosomal protein L36 signature.
216591001325	30S ribosomal protein S13; Validated; Region: rpsM; PRK05179
216591001326	30S ribosomal protein S13; Region: bact_S13; TIGR03631
216591001327	HMMPfam hit to PF00416, Ribosomal protein S13/S18, score 1.3e-55
216591001328	PS00646 Ribosomal protein S13 signature.
216591001329	30S ribosomal protein S11; Validated; Region: PRK05309
216591001330	HMMPfam hit to PF00411, Ribosomal protein S11, score 1.6e-70
216591001331	PS00054 Ribosomal protein S11 signature.
216591001332	30S ribosomal protein S4; Validated; Region: rpsD; PRK05327
216591001333	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
216591001334	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
216591001335	RNA binding surface [nucleotide binding]; other site
216591001336	HMMPfam hit to PF00163, Ribosomal protein S4/S9 N-terminal domai, score 1.9e-31
216591001337	Predicted helix-turn-helix motif with score 1167.000, SD 3.16 at aa 57-78, sequence REKQKVKRIYGVLERQFRRYFA
216591001338	PS00632 Ribosomal protein S4 signature.
216591001339	HMMPfam hit to PF01479, S4 domain, score 3e-20
216591001340	DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182
216591001341	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
216591001342	alphaNTD homodimer interface [polypeptide binding]; other site
216591001343	alphaNTD - beta interaction site [polypeptide binding]; other site
216591001344	alphaNTD - beta' interaction site [polypeptide binding]; other site
216591001345	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; pfam03118
216591001346	HMMPfam hit to PF01193, RNA polymerase Rpb3/Rpb11 dimerisation, score 2.1e-20
216591001347	HMMPfam hit to PF01000, RNA polymerase Rpb3/RpoA insert domain, score 3.7e-48
216591001348	HMMPfam hit to PF03118, Bacterial RNA polymerase, alpha chain C, score 9.3e-28
216591001349	50S ribosomal protein L17; Validated; Region: rplQ; PRK05591
216591001350	HMMPfam hit to PF01196, Ribosomal protein L17, score 4.8e-53
216591001351	PS01167 Ribosomal protein L17 signature.
216591001352	Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]; Region: CutA; COG1324
216591001353	HMMPfam hit to PF03091, CutA1 divalent ion tolerance protein, score 1.1e-19
216591001354	thiol:disulfide interchange protein precursor; Provisional; Region: dipZ; PRK00293
216591001355	Disulphide bond corrector protein DsbC; Region: DsbC; pfam11412
216591001356	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
216591001357	DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD...; Region: DsbDgamma; cd02953
216591001358	DsbD alpha interface [polypeptide binding]; other site
216591001359	catalytic residues [active]
216591001360	9 probable transmembrane helices predicted for BCAL0263 by TMHMM2.0 at aa 13-35, 189-211, 232-254, 269-288, 322-344, 354-376, 389-411, 415-437 and 444-466
216591001361	HMMPfam hit to PF02683, Cytochrome C biogenesis protein transmemb, score 2.8e-06
216591001362	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001363	HMMPfam hit to PF00085, Thioredoxin, score 0.00091
216591001364	PS00194 Thioredoxin family active site.
216591001365	Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS_aspartate_rich; cd04823
216591001366	dimer interface [polypeptide binding]; other site
216591001367	active site
216591001368	aspartate-rich active site metal binding site; other site
216591001369	allosteric magnesium binding site [ion binding]; other site
216591001370	Schiff base residues; other site
216591001371	HMMPfam hit to PF00490, Delta-aminolevulinic acid dehydratase, score 1e-200
216591001372	PS00169 Delta-aminolevulinic acid dehydratase active site.
216591001373	YihA (EngB) GTPase family; Region: YihA_EngB; cd01876
216591001374	G1 box; other site
216591001375	GTP/Mg2+ binding site [chemical binding]; other site
216591001376	Switch I region; other site
216591001377	G2 box; other site
216591001378	G3 box; other site
216591001379	Switch II region; other site
216591001380	G4 box; other site
216591001381	G5 box; other site
216591001382	HMMPfam hit to PF01926, GTPase of unknown function, score 1e-27
216591001383	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001384	Cytochrome c553 [Energy production and conversion]; Region: COG2863
216591001385	Cytochrome c; Region: Cytochrom_C; cl11414
216591001386	HMMPfam hit to PF00034, Cytochrome c, score 3e-09
216591001387	PS00190 Cytochrome c family heme-binding site signature.
216591001388	HMMPfam hit to PF00034, Cytochrome c, score 0.0016
216591001389	PS00190 Cytochrome c family heme-binding site signature.
216591001390	ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]; Region: ResB; cl09125
216591001391	ResB-like family; Region: ResB; pfam05140
216591001392	HMMPfam hit to PF05140, ResB-like family, score 3.3e-123
216591001393	4 probable transmembrane helices predicted for BCAL0267 by TMHMM2.0 at aa 5-22, 50-72, 148-170 and 616-634
216591001394	cytochrome c-type biogenesis protein CcsB; Region: cytochr_II_ccsB; TIGR03144
216591001395	10 probable transmembrane helices predicted for BCAL0268 by TMHMM2.0 at aa 34-56, 85-102, 122-144, 156-175, 190-209, 216-238, 258-280, 301-323, 338-357 and 364-386
216591001396	HMMPfam hit to PF01578, Cytochrome C assembly protein, score 1.2e-55
216591001397	TMAO/DMSO reductase; Reviewed; Region: PRK05363
216591001398	Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199
216591001399	Moco binding site; other site
216591001400	metal coordination site [ion binding]; other site
216591001401	1 probable transmembrane helix predicted for BCAL0269 by TMHMM2.0 at aa 34-56
216591001402	HMMPfam hit to PF00174, Oxidoreductase molybdopterin binding d, score 8.4e-68
216591001403	putative sulfite oxidase subunit YedZ; Reviewed; Region: PRK05419
216591001404	6 probable transmembrane helices predicted for BCAL0270 by TMHMM2.0 at aa 33-55, 68-90, 105-124, 137-159, 174-193 and 205-223
216591001405	HMMPfam hit to PF01794, Ferric reductase like transmembrane com, score 5.2e-32
216591001406	Prokaryotic lipoprotein-attachment site; Region: LPAM_2; pfam13627
216591001407	1 probable transmembrane helix predicted for BCAL0272 by TMHMM2.0 at aa 7-29
216591001408	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001409	frataxin-like protein; Provisional; Region: cyaY; PRK00446
216591001410	putative iron binding site [ion binding]; other site
216591001411	HMMPfam hit to PF01491, Frataxin-like domain, score 2.7e-35
216591001412	Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]; Region: MrcA; COG5009
216591001413	Transglycosylase; Region: Transgly; pfam00912
216591001414	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
216591001415	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 3.4e-39
216591001416	HMMPfam hit to PF00912, Transglycosylase, score 1.8e-90
216591001417	1 probable transmembrane helix predicted for BCAL0274 by TMHMM2.0 at aa 25-47
216591001418	Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilM; COG4972
216591001419	HMMPfam hit to PF05137, Fimbrial assembly protein (PilN), score 0.034
216591001420	1 probable transmembrane helix predicted for BCAL0276 by TMHMM2.0 at aa 43-65
216591001421	type IV pilus secretin (or competence protein) PilQ; Region: IV_pilus_PilQ; TIGR02515
216591001422	Secretin and TonB N terminus short domain; Region: STN; pfam07660
216591001423	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
216591001424	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
216591001425	1 probable transmembrane helix predicted for BCAL0278 by TMHMM2.0 at aa 7-29
216591001426	HMMPfam hit to PF07660, Secretin and TonB N terminus short domain, score 2.7e-12
216591001427	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 3.4e-07
216591001428	HMMPfam hit to PF00263, Bacterial type II and III secretion system, score 3.6e-64
216591001429	PS00875 Bacterial type II secretion system protein D signature.
216591001430	shikimate kinase; Reviewed; Region: aroK; PRK00131
216591001431	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
216591001432	ADP binding site [chemical binding]; other site
216591001433	magnesium binding site [ion binding]; other site
216591001434	putative shikimate binding site; other site
216591001435	PS00267 Tachykinin family signature.
216591001436	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001437	HMMPfam hit to PF01202, Shikimate kinase, score 5.5e-77
216591001438	PS01128 Shikimate kinase signature.
216591001439	Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195
216591001440	active site
216591001441	dimer interface [polypeptide binding]; other site
216591001442	metal binding site [ion binding]; metal-binding site
216591001443	HMMPfam hit to PF01761, 3-dehydroquinate synthase, score 3.6e-175
216591001444	deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional; Region: PRK01286
216591001445	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
216591001446	Zn2+ binding site [ion binding]; other site
216591001447	Mg2+ binding site [ion binding]; other site
216591001448	Phosphohydrolase-associated domain; Region: HD_assoc; pfam13286
216591001449	HMMPfam hit to PF01966, HD domain, score 1.3e-16
216591001450	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
216591001451	glycerol-3-phosphate transporter periplasmic binding protein; Provisional; Region: PRK10974
216591001452	1 probable transmembrane helix predicted for BCAL0282 by TMHMM2.0 at aa 7-29
216591001453	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 7.8e-20
216591001454	PS01037 Bacterial extracellular solute-binding proteins, family 1 signature.
216591001455	ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]; Region: LplB; COG4209
216591001456	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591001457	dimer interface [polypeptide binding]; other site
216591001458	conserved gate region; other site
216591001459	putative PBP binding loops; other site
216591001460	ABC-ATPase subunit interface; other site
216591001461	6 probable transmembrane helices predicted for BCAL0283 by TMHMM2.0 at aa 12-34, 74-96, 109-129, 144-166, 205-227 and 265-287
216591001462	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 6.3e-13
216591001463	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001464	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591001465	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
216591001466	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591001467	dimer interface [polypeptide binding]; other site
216591001468	conserved gate region; other site
216591001469	putative PBP binding loops; other site
216591001470	ABC-ATPase subunit interface; other site
216591001471	8 probable transmembrane helices predicted for BCAL0284 by TMHMM2.0 at aa 10-32, 41-63, 83-105, 112-130, 145-167, 188-210, 215-234 and 247-269
216591001472	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.9e-23
216591001473	glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650
216591001474	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
216591001475	Walker A/P-loop; other site
216591001476	ATP binding site [chemical binding]; other site
216591001477	Q-loop/lid; other site
216591001478	ABC transporter signature motif; other site
216591001479	Walker B; other site
216591001480	D-loop; other site
216591001481	H-loop/switch region; other site
216591001482	HMMPfam hit to PF00005, ABC transporter, score 1.1e-57
216591001483	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001484	PS00211 ABC transporters family signature.
216591001485	HMMPfam hit to PF08402, TOBE domain, score 5.6e-08
216591001486	cytoplasmic glycerophosphodiester phosphodiesterase; Provisional; Region: ugpQ; PRK09454
216591001487	Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins; Region: GDPD_EcUgpQ_like; cd08562
216591001488	putative active site [active]
216591001489	catalytic site [active]
216591001490	putative metal binding site [ion binding]; other site
216591001491	HMMPfam hit to PF03009, Glycerophosphoryl diester phosphodiesterase, score 1.6e-57
216591001492	Outer membrane protein W [Cell envelope biogenesis, outer membrane]; Region: OmpW; COG3047
216591001493	HMMPfam hit to PF03922, OmpW family, score 2.8e-14
216591001494	1 probable transmembrane helix predicted for BCAL0287 by TMHMM2.0 at aa 5-27
216591001495	Transposase IS200 like; Region: Y1_Tnp; cl00848
216591001496	HMMPfam hit to PF07605, Protein of unknown function (DUF1568), score 1.1e-08
216591001497	glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750
216591001498	Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The...; Region: GltS; cd00713
216591001499	active site
216591001500	dimer interface [polypeptide binding]; other site
216591001501	Glutamate synthase central domain; Region: Glu_syn_central; pfam04898
216591001502	Glutamate synthase (GltS) FMN-binding domain.  GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast...; Region: GltS_FMN; cd02808
216591001503	active site
216591001504	FMN binding site [chemical binding]; other site
216591001505	substrate binding site [chemical binding]; other site
216591001506	3Fe-4S cluster binding site [ion binding]; other site
216591001507	gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the...; Region: gltB_C; cd00982
216591001508	domain interface; other site
216591001509	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 4.7e-224
216591001510	HMMPfam hit to PF04898, Glutamate synthase central domain, score 6.7e-175
216591001511	HMMPfam hit to PF01645, Conserved region in glutamate synthas, score 1.6e-232
216591001512	HMMPfam hit to PF01493, GXGXG motif, score 1.8e-91
216591001513	glutamate synthase subunit beta; Reviewed; Region: gltD; PRK12810
216591001514	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591001515	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591001516	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 6.9e-25
216591001517	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 0.002
216591001518	Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115
216591001519	amino acid carrier protein; Region: agcS; TIGR00835
216591001520	9 probable transmembrane helices predicted for BCAL0291 by TMHMM2.0 at aa 15-34, 77-99, 141-163, 184-203, 218-240, 300-322, 349-371, 384-406 and 416-435
216591001521	HMMPfam hit to PF01235, Sodium:alanine symporter family, score 6.4e-197
216591001522	PS00873 Sodium:alanine symporter family signature.
216591001523	2'-5' RNA ligase; Region: 2_5_ligase; TIGR02258
216591001524	LigT like Phosphoesterase; Region: LigT_PEase; pfam02834
216591001525	HMMPfam hit to PF02834, 2',5' RNA ligase family, score 1.1e-05
216591001526	HMMPfam hit to PF02834, 2',5' RNA ligase family, score 0.0057
216591001527	D-amino acid dehydrogenase small subunit; Validated; Region: PRK00711
216591001528	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591001529	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 6.5e-88
216591001530	benzoate transport; Region: 2A0115; TIGR00895
216591001531	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591001532	putative substrate translocation pore; other site
216591001533	HMMPfam hit to PF00083, Sugar (and other) transporter, score 1.4e-07
216591001534	10 probable transmembrane helices predicted for BCAL0294 by TMHMM2.0 at aa 21-43, 53-75, 149-168, 172-191, 228-250, 265-287, 294-316, 321-343, 356-378 and 382-404
216591001535	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.4e-43
216591001536	PS00216 Sugar transport proteins signature 1.
216591001537	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591001538	NAD(P) binding site [chemical binding]; other site
216591001539	active site
216591001540	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0012
216591001541	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.4e-08
216591001542	1 probable transmembrane helix predicted for BCAL0295 by TMHMM2.0 at aa 7-26
216591001543	ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]; Region: COG4178
216591001544	ABC transporter transmembrane region 2; Region: ABC_membrane_2; cl00549
216591001545	ATP-binding cassette domain of peroxisomal transporter, subfamily D; Region: ABCD_peroxisomal_ALDP; cd03223
216591001546	HMMPfam hit to PF00005, ABC transporter, score 3.2e-26
216591001547	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001548	HMMPfam hit to PF06472, ABC transporter transmembrane region, score 1.9e-71
216591001549	5 probable transmembrane helices predicted for BCAL0296 by TMHMM2.0 at aa 36-58, 81-103, 163-182, 192-214 and 285-307
216591001550	tRNA:m(5)U-54 methyltransferase; Region: gid_trmFO; TIGR00137
216591001551	glycine oxidase ThiO; Region: thiamin_ThiO; TIGR02352
216591001552	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.2e-42
216591001553	sulfur carrier protein ThiS; Provisional; Region: PRK06944
216591001554	charged pocket; other site
216591001555	hydrophobic patch; other site
216591001556	HMMPfam hit to PF02597, ThiS family, score 3.4e-13
216591001557	Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728
216591001558	ThiS interaction site; other site
216591001559	putative active site [active]
216591001560	tetramer interface [polypeptide binding]; other site
216591001561	HMMPfam hit to PF05690, Thiazole biosynthesis protein ThiG, score 2.2e-159
216591001562	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
216591001563	Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-; Region: TMP_TenI; cd00564
216591001564	thiamine phosphate binding site [chemical binding]; other site
216591001565	active site
216591001566	pyrophosphate binding site [ion binding]; other site
216591001567	HMMPfam hit to PF02581, Thiamine monophosphate synthase/TENI, score 1.2e-65
216591001568	ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127
216591001569	ATP-binding cassette transport system involved in resistant to organic solvents; Region: ABC_Org_Solvent_Resistant; cd03261
216591001570	Walker A/P-loop; other site
216591001571	ATP binding site [chemical binding]; other site
216591001572	Q-loop/lid; other site
216591001573	ABC transporter signature motif; other site
216591001574	Walker B; other site
216591001575	D-loop; other site
216591001576	H-loop/switch region; other site
216591001577	HMMPfam hit to PF00005, ABC transporter, score 4.7e-52
216591001578	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001579	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001580	PS00211 ABC transporters family signature.
216591001581	ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2B; COG0767
216591001582	Permease; Region: Permease; pfam02405
216591001583	HMMPfam hit to PF02405, Domain of unknown function DUF140, score 3.4e-95
216591001584	5 probable transmembrane helices predicted for BCAL0302 by TMHMM2.0 at aa 46-68, 83-105, 153-175, 195-214 and 235-254
216591001585	ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463
216591001586	mce related protein; Region: MCE; pfam02470
216591001587	1 probable transmembrane helix predicted for BCAL0303 by TMHMM2.0 at aa 7-28
216591001588	HMMPfam hit to PF02470, mce related protein, score 2.2e-27
216591001589	VacJ like lipoprotein; Region: VacJ; cl01073
216591001590	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001591	HMMPfam hit to PF04333, VacJ like lipoprotein, score 3.2e-91
216591001592	Toluene tolerance, Ttg2; Region: Tol_Tol_Ttg2; pfam05494
216591001593	HMMPfam hit to PF05494, Toluene tolerance, Ttg2, score 2.9e-49
216591001594	Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043
216591001595	anti sigma factor interaction site; other site
216591001596	regulatory phosphorylation site [posttranslational modification]; other site
216591001597	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
216591001598	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
216591001599	Walker A/P-loop; other site
216591001600	ATP binding site [chemical binding]; other site
216591001601	Q-loop/lid; other site
216591001602	ABC transporter signature motif; other site
216591001603	Walker B; other site
216591001604	D-loop; other site
216591001605	H-loop/switch region; other site
216591001606	HMMPfam hit to PF00005, ABC transporter, score 5e-59
216591001607	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001608	PS00211 ABC transporters family signature.
216591001609	ABC-2 type transporter; Region: ABC2_membrane; cl17235
216591001610	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
216591001611	HMMPfam hit to PF01061, ABC-2 type transporter, score 5.7e-42
216591001612	6 probable transmembrane helices predicted for BCAL0308 by TMHMM2.0 at aa 20-42, 52-74, 107-129, 139-161, 173-195 and 224-246
216591001613	PS00890 ABC-2 type transport system integral membrane proteins signature.
216591001614	Predicted transcriptional regulator, BolA superfamily [Transcription]; Region: COG5007
216591001615	HMMPfam hit to PF01722, BolA-like protein, score 1.2e-21
216591001616	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Region: murA; TIGR01072
216591001617	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
216591001618	hinge; other site
216591001619	active site
216591001620	HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-car, score 1.8e-144
216591001621	ATP phosphoribosyltransferase catalytic subunit; Reviewed; Region: hisG; PRK01686
216591001622	ATP phosphoribosyltransferase [Amino acid transport and metabolism]; Region: HisG; COG0040
216591001623	HMMPfam hit to PF01634, ATP phosphoribosyltransferase, score 4.1e-53
216591001624	PS01316 ATP phosphoribosyltransferase signature.
216591001625	Histidinol dehydrogenase [Amino acid transport and metabolism]; Region: HisD; COG0141
216591001626	Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent...; Region: Histidinol_dh; cd06572
216591001627	NAD binding site [chemical binding]; other site
216591001628	dimerization interface [polypeptide binding]; other site
216591001629	product binding site; other site
216591001630	substrate binding site [chemical binding]; other site
216591001631	zinc binding site [ion binding]; other site
216591001632	catalytic residues [active]
216591001633	HMMPfam hit to PF00815, Histidinol dehydrogenase, score 1.7e-187
216591001634	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591001635	histidinol-phosphate aminotransferase; Provisional; Region: PRK04870
216591001636	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591001637	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591001638	homodimer interface [polypeptide binding]; other site
216591001639	catalytic residue [active]
216591001640	HMMPfam hit to PF00155, Aminotransferase class I and II, score 9.7e-45
216591001641	Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914
216591001642	putative active site pocket [active]
216591001643	4-fold oligomerization interface [polypeptide binding]; other site
216591001644	metal binding residues [ion binding]; metal-binding site
216591001645	3-fold/trimer interface [polypeptide binding]; other site
216591001646	HMMPfam hit to PF00475, Imidazoleglycerol-phosphate dehydratase, score 4e-91
216591001647	PS00954 Imidazoleglycerol-phosphate dehydratase signature 1.
216591001648	PS00955 Imidazoleglycerol-phosphate dehydratase signature 2.
216591001649	MarC family integral membrane protein; Region: MarC; cl00919
216591001650	HMMPfam hit to PF01914, MarC family integral membrane protein, score 2.1e-71
216591001651	6 probable transmembrane helices predicted for BCAL0315 by TMHMM2.0 at aa 4-26, 39-61, 65-87, 111-133, 143-160 and 181-203
216591001652	imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13146
216591001653	Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748
216591001654	putative active site [active]
216591001655	oxyanion strand; other site
216591001656	catalytic triad [active]
216591001657	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 4.5e-31
216591001658	PS00442 Glutamine amidotransferases class-I active site.
216591001659	HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA; cd04732
216591001660	Histidine biosynthesis protein; Region: His_biosynth; pfam00977
216591001661	catalytic residues [active]
216591001662	HMMPfam hit to PF00977, Histidine biosynthesis protein, score 4e-121
216591001663	The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731
216591001664	Histidine biosynthesis protein; Region: His_biosynth; pfam00977
216591001665	substrate binding site [chemical binding]; other site
216591001666	glutamase interaction surface [polypeptide binding]; other site
216591001667	HMMPfam hit to PF00977, Histidine biosynthesis protein, score 5.4e-138
216591001668	phosphoribosyl-AMP cyclohydrolase; Reviewed; Region: hisI; PRK00051
216591001669	HMMPfam hit to PF01502, Phosphoribosyl-AMP cyclohydrolase, score 9.8e-53
216591001670	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Escherichia coli phosphoribosyl-ATP pyrophosphohydrolase (HisIE or PRATP-PH) and its homologs; Region: NTP-PPase_HisIE_like; cd11534
216591001671	metal binding site [ion binding]; metal-binding site
216591001672	HMMPfam hit to PF01503, Phosphoribosyl-ATP pyrophosphohydrolase, score 6.2e-36
216591001673	Predicted membrane protein [Function unknown]; Region: COG3671
216591001674	2 probable transmembrane helices predicted for BCAL0321 by TMHMM2.0 at aa 39-61 and 88-110
216591001675	Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276
216591001676	nucleotide binding site/active site [active]
216591001677	HIT family signature motif; other site
216591001678	catalytic residue [active]
216591001679	HMMPfam hit to PF01230, HIT domain, score 1.1e-40
216591001680	twin arginine translocase protein A; Provisional; Region: tatA; PRK02958
216591001681	HMMPfam hit to PF02416, mttA/Hcf106 family, score 6.4e-08
216591001682	1 probable transmembrane helix predicted for BCAL0323 by TMHMM2.0 at aa 4-21
216591001683	sec-independent translocase; Provisional; Region: tatB; PRK01919
216591001684	HMMPfam hit to PF02416, mttA/Hcf106 family, score 0.0002
216591001685	Sec-independent protein translocase protein (TatC); Region: TatC; cl00521
216591001686	HMMPfam hit to PF00902, Sec-independent protein translocase protein, score 1.1e-92
216591001687	6 probable transmembrane helices predicted for BCAL0325 by TMHMM2.0 at aa 27-49, 81-103, 123-145, 165-187, 200-218 and 223-245
216591001688	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265
216591001689	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
216591001690	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591001691	protein binding site [polypeptide binding]; other site
216591001692	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 1.1e-13
216591001693	HMMPfam hit to PF00089, Trypsin, score 4.5e-18
216591001694	1 probable transmembrane helix predicted for BCAL0326 by TMHMM2.0 at aa 5-24
216591001695	Uncharacterized conserved protein [Function unknown]; Region: COG0327
216591001696	NIF3 (NGG1p interacting factor 3); Region: NIF3; cl15371
216591001697	HMMPfam hit to PF01784, NIF3 (NGG1p interacting factor 3), score 1.1e-93
216591001698	Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including...; Region: Rieske_cytochrome_bc1; cd03470
216591001699	ubiquinol-cytochrome c reductase, iron-sulfur subunit; Region: Rieske_proteo; TIGR01416
216591001700	[2Fe-2S] cluster binding site [ion binding]; other site
216591001701	1 probable transmembrane helix predicted for BCAL0328 by TMHMM2.0 at aa 17-39
216591001702	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 2e-05
216591001703	PS00199 Rieske iron-sulfur protein signature 1.
216591001704	PS00200 Rieske iron-sulfur protein signature 2.
216591001705	Cytochrome b subunit of the bc complex [Energy production and conversion]; Region: QcrB; COG1290
216591001706	Cytochrome b (N-terminus)/b6/petB:  Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria; Region: Cytochrome_b_N; cd00284
216591001707	Qi binding site; other site
216591001708	intrachain domain interface; other site
216591001709	interchain domain interface [polypeptide binding]; other site
216591001710	heme bH binding site [chemical binding]; other site
216591001711	heme bL binding site [chemical binding]; other site
216591001712	Qo binding site; other site
216591001713	interchain domain interface [polypeptide binding]; other site
216591001714	intrachain domain interface; other site
216591001715	Qi binding site; other site
216591001716	Cytochrome b(C-terminal)/b6/petD; Region: Cytochrom_B_C; pfam00032
216591001717	Qo binding site; other site
216591001718	HMMPfam hit to PF00033, Cytochrome b(N-terminal)/b6/petB, score 1.9e-86
216591001719	11 probable transmembrane helices predicted for BCAL0329 by TMHMM2.0 at aa 42-64, 89-111, 126-148, 160-179, 194-216, 254-276, 311-333, 340-357, 361-380, 392-414 and 424-446
216591001720	PS00192 Cytochrome b/b6 heme-ligand signature.
216591001721	Cytochrome C1 family; Region: Cytochrom_C1; pfam02167
216591001722	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001723	HMMPfam hit to PF02167, Cytochrome C1 family, score 4.6e-07
216591001724	PS00190 Cytochrome c family heme-binding site signature.
216591001725	1 probable transmembrane helix predicted for BCAL0330 by TMHMM2.0 at aa 224-246
216591001726	stringent starvation protein A; Provisional; Region: sspA; PRK09481
216591001727	GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival...; Region: GST_N_SspA; cd03059
216591001728	C-terminal domain interface [polypeptide binding]; other site
216591001729	putative GSH binding site (G-site) [chemical binding]; other site
216591001730	dimer interface [polypeptide binding]; other site
216591001731	C-terminal, alpha helical domain of Stringent starvation protein A; Region: GST_C_SspA; cd03186
216591001732	dimer interface [polypeptide binding]; other site
216591001733	N-terminal domain interface [polypeptide binding]; other site
216591001734	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal do, score 2.9e-17
216591001735	HMMPfam hit to PF00462, Glutaredoxin, score 0.004
216591001736	ClpXP protease specificity-enhancing factor; Provisional; Region: PRK11798
216591001737	HMMPfam hit to PF04386, Stringent starvation protein B, score 4.9e-52
216591001738	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591001739	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591001740	substrate binding pocket [chemical binding]; other site
216591001741	membrane-bound complex binding site; other site
216591001742	hinge residues; other site
216591001743	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 9.3e-93
216591001744	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591001745	1 probable transmembrane helix predicted for BCAL0334 by TMHMM2.0 at aa 7-26
216591001746	Uncharacterized protein conserved in bacteria (DUF2077); Region: DUF2077; pfam09850
216591001747	1 probable transmembrane helix predicted for BCAL0337 by TMHMM2.0 at aa 209-231
216591001748	type VI secretion protein, VC_A0114 family; Region: VI_chp_4; TIGR03353
216591001749	Bacterial protein of unknown function (DUF876); Region: DUF876; pfam05936
216591001750	HMMPfam hit to PF05936, Bacterial protein of unknown function (DUF87, score 9.6e-179
216591001751	Type VI secretion lipoprotein; Region: T6SS-SciN; cl01405
216591001752	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001753	1 probable transmembrane helix predicted for BCAL0339 by TMHMM2.0 at aa 5-27
216591001754	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001755	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591001756	TPR motif; other site
216591001757	binding surface
216591001758	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001759	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.0047
216591001760	Protein of unknown function (DUF770); Region: DUF770; pfam05591
216591001761	HMMPfam hit to PF05591, Protein of unknown function (DUF770), score 2e-88
216591001762	type VI secretion protein, EvpB/VC_A0108 family; Region: VI_chp_2; TIGR03355
216591001763	Protein of unknown function (DUF877); Region: DUF877; pfam05943
216591001764	HMMPfam hit to PF05943, Protein of unknown function (DUF877), score 0
216591001765	Protein of unknown function (DUF796); Region: DUF796; pfam05638
216591001766	HMMPfam hit to PF05638, Protein of unknown function (DUF796), score 8.2e-50
216591001767	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3518
216591001768	HMMPfam hit to PF07025, Protein of unknown function (DUF1316), score 3e-53
216591001769	Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3519
216591001770	type VI secretion protein, VC_A0110 family; Region: VI_chp_6; TIGR03359
216591001771	HMMPfam hit to PF05947, Bacterial protein of unknown function (DUF87, score 1.4e-240
216591001772	Protein of unknown function (DUF1305); Region: DUF1305; pfam06996
216591001773	HMMPfam hit to PF06996, Protein of unknown function (DUF1305), score 1.7e-93
216591001774	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591001775	type VI secretion ATPase, ClpV1 family; Region: VI_ClpV1; TIGR03345
216591001776	Clp amino terminal domain; Region: Clp_N; pfam02861
216591001777	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591001778	Walker A motif; other site
216591001779	ATP binding site [chemical binding]; other site
216591001780	Walker B motif; other site
216591001781	arginine finger; other site
216591001782	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591001783	Walker A motif; other site
216591001784	ATP binding site [chemical binding]; other site
216591001785	Walker B motif; other site
216591001786	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; cl11083
216591001787	HMMPfam hit to PF02861, Clp amino terminal domain, score 1.2e-08
216591001788	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.1e-06
216591001789	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001790	PS00870 Chaperonins clpA/B signature 1.
216591001791	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 5.9e-89
216591001792	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 3.2e-05
216591001793	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001794	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001795	type VI secretion-associated protein, ImpA family; Region: VI_chp_8; TIGR03363
216591001796	ImpA-related N-terminal; Region: ImpA-rel_N; pfam06812
216591001797	HMMPfam hit to PF06812, ImpA-related N-terminal, score 1.2e-24
216591001798	Merozoite surface protein 1 (MSP1) C-terminus; Region: MSP1_C; pfam07462
216591001799	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
216591001800	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591001801	ligand binding site [chemical binding]; other site
216591001802	HMMPfam hit to PF00691, OmpA family, score 1.8e-35
216591001803	1 probable transmembrane helix predicted for BCAL0349 by TMHMM2.0 at aa 12-34
216591001804	Uncharacterized protein conserved in bacteria (DUF2094); Region: DUF2094; cl01611
216591001805	ImcF-related N-terminal domain; Region: ImcF-related_N; pfam14331
216591001806	Intracellular multiplication and human macrophage-killing; Region: IcmF-related; pfam06761
216591001807	Intracellular multiplication and human macrophage-killing; Region: IcmF-related; pfam06761
216591001808	Protein of unknown function (DUF1215); Region: DUF1215; pfam06744
216591001809	HMMPfam hit to PF06744, Protein of unknown function (DUF1215), score 1.6e-35
216591001810	HMMPfam hit to PF06761, ImcF-related, score 6.8e-76
216591001811	3 probable transmembrane helices predicted for BCAL0351 by TMHMM2.0 at aa 13-30, 35-57 and 444-466
216591001812	PS00242 Integrins alpha chain signature.
216591001813	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001814	D-alanyl-D-alanine carboxypeptidase; Region: VanY; pfam02557
216591001815	D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_M15_4; pfam13539
216591001816	HMMPfam hit to PF02557, D-alanyl-D-alanine carboxypeptidase, score 0.00022
216591001817	2 probable transmembrane helices predicted for BCAL0352 by TMHMM2.0 at aa 7-29 and 78-97
216591001818	CorA-like Mg2+ transporter protein; Region: CorA; pfam01544
216591001819	Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily; Region: ZntB_u1; cd12834
216591001820	Cl binding site [ion binding]; other site
216591001821	oligomer interface [polypeptide binding]; other site
216591001822	HMMPfam hit to PF01544, CorA-like Mg2+ transporter protein, score 0.00037
216591001823	2 probable transmembrane helices predicted for BCAL0354 by TMHMM2.0 at aa 280-302 and 317-336
216591001824	putative membrane protein (fragment);Probable gene remnant. Similar to the N-terminal regions of several proteins, for example, Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus) hypothetical protein UniProt:Q46RN6 (EMBL:CP000091) (97 aa) fasta scores: E()=5.9e-07, 56.000% id in 50 aa, and Pseudomonas aeruginosa hypothetical protein UniProt:Q9I0E5 (EMBL:AE004698) (93 aa) fasta scores: E()=4.4e-06, 65.217% id in 46 aa
216591001825	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
216591001826	NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604
216591001827	NAD(P) binding site [chemical binding]; other site
216591001828	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 1.5e-14
216591001829	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 2.1e-08
216591001830	transcriptional activator TtdR; Provisional; Region: PRK09801
216591001831	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591001832	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591001833	putative effector binding pocket; other site
216591001834	dimerization interface [polypeptide binding]; other site
216591001835	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.1e-19
216591001836	Predicted helix-turn-helix motif with score 1234.000, SD 3.39 at aa 31-52, sequence QSFSAAARRLGVAASSVTRRID
216591001837	PS00044 Bacterial regulatory proteins, lysR family signature.
216591001838	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.3e-43
216591001839	Peptidase family M1; Region: Peptidase_M1; pfam01433
216591001840	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
216591001841	Zn binding site [ion binding]; other site
216591001842	HMMPfam hit to PF01433, Peptidase family M1, score 5.7e-59
216591001843	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591001844	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001845	Water Stress and Hypersensitive response; Region: WHy; smart00769
216591001846	1 probable transmembrane helix predicted for BCAL0359 by TMHMM2.0 at aa 27-49
216591001847	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001848	Domain of unknown function (DUF1508); Region: DUF1508; pfam07411
216591001849	Domain of unknown function (DUF1508); Region: DUF1508; pfam07411
216591001850	HMMPfam hit to PF07411, Domain of unknown function (DUF1508), score 3.5e-20
216591001851	HMMPfam hit to PF07411, Domain of unknown function (DUF1508), score 5.5e-24
216591001852	Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]; Region: HemK; COG2890
216591001853	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591001854	S-adenosylmethionine binding site [chemical binding]; other site
216591001855	PS00296 Chaperonins cpn60 signature.
216591001856	HMMPfam hit to PF05175, Methyltransferase small domain, score 4.5e-09
216591001857	PS00092 N-6 Adenine-specific DNA methylases signature.
216591001858	Methyltransferase domain; Region: Methyltransf_32; pfam13679
216591001859	Protein of unknown function (DUF1415); Region: DUF1415; pfam07209
216591001860	HMMPfam hit to PF07209, Protein of unknown function (DUF1415), score 4.2e-95
216591001861	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591001862	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591001863	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.2e-16
216591001864	Predicted helix-turn-helix motif with score 1033.000, SD 2.71 at aa 43-64, sequence VGVEAVVERAGVNKMSLYRQFS
216591001865	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591001866	putative substrate translocation pore; other site
216591001867	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591001868	12 probable transmembrane helices predicted for BCAL0365 by TMHMM2.0 at aa 13-32, 52-74, 79-98, 108-130, 142-164, 174-193, 241-263, 278-297, 304-326, 331-353, 365-387 and 391-413
216591001869	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.2e-46
216591001870	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001871	PS00283 Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature.
216591001872	Nitroreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and...; Region: Nitroreductase_2; cd02138
216591001873	putative FMN binding site [chemical binding]; other site
216591001874	HMMPfam hit to PF00881, Nitroreductase family, score 2.4e-22
216591001875	putative chaperone; Provisional; Region: PRK11678
216591001876	Escherichia coli YegD, a putative chaperone protein, and related proteins; Region: YegD_like; cd10231
216591001877	nucleotide binding site [chemical binding]; other site
216591001878	putative NEF/HSP70 interaction site [polypeptide binding]; other site
216591001879	SBD interface [polypeptide binding]; other site
216591001880	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591001881	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
216591001882	DNA-binding site [nucleotide binding]; DNA binding site
216591001883	RNA-binding motif; other site
216591001884	HMMPfam hit to PF00313, 'Cold-shock' DNA-binding domain, score 2.9e-40
216591001885	PS00352 'Cold-shock' DNA-binding domain signature.
216591001886	amino acid transporter; Region: 2A0306; TIGR00909
216591001887	14 probable transmembrane helices predicted for BCAL0369 by TMHMM2.0 at aa 9-31, 46-68, 81-103, 129-151, 158-180, 195-217, 238-260, 280-302, 345-362, 366-388, 400-422, 426-444, 457-476 and 486-508
216591001888	HMMPfam hit to PF00324, Amino acid permease, score 1.3e-15
216591001889	The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine; Region: 45_DOPA_Dioxygenase; cd07363
216591001890	Catalytic LigB subunit of aromatic ring-opening dioxygenase; Region: LigB; pfam02900
216591001891	putative active site [active]
216591001892	metal binding site [ion binding]; metal-binding site
216591001893	HMMPfam hit to PF02900, Catalytic LigB subunit of aromatic ring-open, score 6.7e-86
216591001894	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional; Region: PRK06029
216591001895	Flavoprotein; Region: Flavoprotein; pfam02441
216591001896	HMMPfam hit to PF02441, Flavoprotein, score 1.4e-49
216591001897	Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain...; Region: GRX_PICOT_like; cd03028
216591001898	putative GSH binding site [chemical binding]; other site
216591001899	catalytic residues [active]
216591001900	HMMPfam hit to PF00462, Glutaredoxin, score 3.1e-31
216591001901	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328
216591001902	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591001903	S-adenosylmethionine binding site [chemical binding]; other site
216591001904	HMMPfam hit to PF05175, Methyltransferase small domain, score 5.3e-10
216591001905	HMMPfam hit to PF08242, Methyltransferase domain, score 0.00082
216591001906	PS00092 N-6 Adenine-specific DNA methylases signature.
216591001907	peptide chain release factor 1; Validated; Region: prfA; PRK00591
216591001908	This domain is found in peptide chain release factors; Region: PCRF; smart00937
216591001909	RF-1 domain; Region: RF-1; pfam00472
216591001910	HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase domain, score 1.3e-72
216591001911	HMMPfam hit to PF03462, PCRF domain, score 4e-62
216591001912	glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045
216591001913	NADP-binding domain of glutamyl-tRNA reductase; Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213
216591001914	tRNA; other site
216591001915	putative tRNA binding site [nucleotide binding]; other site
216591001916	putative NADP binding site [chemical binding]; other site
216591001917	Glutamyl-tRNAGlu reductase, dimerisation domain; Region: GlutR_dimer; pfam00745
216591001918	HMMPfam hit to PF00745, Glutamyl-tRNAGlu reductase, dimerisation, score 2.9e-25
216591001919	HMMPfam hit to PF01488, Shikimate / quinate 5-dehydrogenase, score 3.4e-65
216591001920	HMMPfam hit to PF05201, Glutamyl-tRNAGlu reductase, N-terminal d, score 1.9e-66
216591001921	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591001922	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591001923	active site
216591001924	phosphorylation site [posttranslational modification]
216591001925	intermolecular recognition site; other site
216591001926	dimerization interface [polypeptide binding]; other site
216591001927	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591001928	DNA binding site [nucleotide binding]
216591001929	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 4.9e-12
216591001930	HMMPfam hit to PF00072, Response regulator receiver domain, score 0.0012
216591001931	3 probable transmembrane helices predicted for BCAL0376a by TMHMM2.0 at aa 4-21, 28-50 and 60-82
216591001932	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
216591001933	Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006
216591001934	X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline; Region: APP; cd01085
216591001935	active site
216591001936	HMMPfam hit to PF00557, metallopeptidase family M24, score 8.1e-11
216591001937	Isochorismatase family; Region: Isochorismatase; pfam00857
216591001938	Nicotinamidase_ related amidohydrolases.  Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia; Region: nicotinamidase_related; cd01014
216591001939	catalytic triad [active]
216591001940	conserved cis-peptide bond; other site
216591001941	HMMPfam hit to PF00857, Isochorismatase family, score 2.4e-11
216591001942	Haloacid dehalogenase-like hydrolase; Region: HAD_2; pfam13419
216591001943	?-D-glucose-1-phosphatase; Provisional; Region: PRK09456
216591001944	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 0.00075
216591001945	putative ABC transporter ATP-binding protein; Reviewed; Region: PRK11819
216591001946	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591001947	Walker A/P-loop; other site
216591001948	ATP binding site [chemical binding]; other site
216591001949	Q-loop/lid; other site
216591001950	ABC transporter signature motif; other site
216591001951	Walker B; other site
216591001952	D-loop; other site
216591001953	H-loop/switch region; other site
216591001954	ABC transporter; Region: ABC_tran_2; pfam12848
216591001955	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591001956	HMMPfam hit to PF00005, ABC transporter, score 1.3e-47
216591001957	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001958	HMMPfam hit to PF00005, ABC transporter, score 2.1e-55
216591001959	PS00211 ABC transporters family signature.
216591001960	PS00017 ATP/GTP-binding site motif A (P-loop).
216591001961	Protein of unknown function (DUF3761); Region: DUF3761; pfam12587
216591001962	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001963	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591001964	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591001965	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591001966	dimerization interface [polypeptide binding]; other site
216591001967	substrate binding pocket [chemical binding]; other site
216591001968	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.3e-43
216591001969	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.4e-19
216591001970	PS00044 Bacterial regulatory proteins, lysR family signature.
216591001971	Predicted helix-turn-helix motif with score 1614.000, SD 4.68 at aa 22-43, sequence LSVKSAAEELSVTPGAVSQMIR
216591001972	oxalate/formate antiporter family transporter; Region: 2A0111; TIGR00890
216591001973	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591001974	putative substrate translocation pore; other site
216591001975	12 probable transmembrane helices predicted for BCAL0383 by TMHMM2.0 at aa 17-39, 59-81, 88-110, 114-136, 149-171, 175-197, 245-267, 277-299, 311-329, 334-356, 368-390 and 394-416
216591001976	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.8e-56
216591001977	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591001978	PS00216 Sugar transport proteins signature 1.
216591001979	Protein of unknown function (DUF419); Region: DUF419; cl15265
216591001980	HMMPfam hit to PF04944, Uncharacterised BCR (COG3801), score 2.3e-34
216591001981	gamma-aminobutyrate permease; Region: GABAperm; TIGR01773
216591001982	HMMPfam hit to PF00324, Amino acid permease, score 4.6e-146
216591001983	12 probable transmembrane helices predicted for BCAL0385 by TMHMM2.0 at aa 17-39, 44-63, 84-106, 121-143, 155-177, 192-214, 238-260, 285-307, 334-353, 357-379, 399-421 and 426-445
216591001984	PS00218 Amino acid permeases signature.
216591001985	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
216591001986	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 5.6e-17
216591001987	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591001988	GTP-binding protein YchF; Reviewed; Region: PRK09601
216591001989	YchF GTPase; Region: YchF; cd01900
216591001990	G1 box; other site
216591001991	GTP/Mg2+ binding site [chemical binding]; other site
216591001992	Switch I region; other site
216591001993	G2 box; other site
216591001994	Switch II region; other site
216591001995	G3 box; other site
216591001996	G4 box; other site
216591001997	G5 box; other site
216591001998	TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867
216591001999	HMMPfam hit to PF06071, Protein of unknown function (DUF933), score 2.7e-59
216591002000	HMMPfam hit to PF01926, GTPase of unknown function, score 1.6e-31
216591002001	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002002	PS00443 Glutamine amidotransferases class-II active site.
216591002003	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608
216591002004	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Region: Ubi-OHases; TIGR01988
216591002005	HMMPfam hit to PF01494, FAD binding domain, score 3e-10
216591002006	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002007	PS01304 ubiH/COQ6 monooxygenase family signature.
216591002008	Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: DsbG; COG1651
216591002009	DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds...; Region: DsbA_DsbC_DsbG; cd03020
216591002010	dimerization domain [polypeptide binding]; other site
216591002011	dimer interface [polypeptide binding]; other site
216591002012	catalytic residues [active]
216591002013	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002014	PS00194 Thioredoxin family active site.
216591002015	Predicted protease with the C-terminal PDZ domain [General function prediction only]; Region: COG3975
216591002016	M61 glycyl aminopeptidase; Region: Peptidase_M61; pfam05299
216591002017	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591002018	protein binding site [polypeptide binding]; other site
216591002019	HMMPfam hit to PF05299, M61 glycyl aminopeptidase, score 6.5e-71
216591002020	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591002021	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 0.018
216591002022	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
216591002023	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591002024	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 0.00038
216591002025	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591002026	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591002027	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591002028	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591002029	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591002030	putative transposase OrfB; Reviewed; Region: PHA02517
216591002031	HTH-like domain; Region: HTH_21; pfam13276
216591002032	Integrase core domain; Region: rve; pfam00665
216591002033	Integrase core domain; Region: rve_2; pfam13333
216591002034	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591002035	Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Region: UDG_F1; cd10027
216591002036	ligand binding site [chemical binding]; other site
216591002037	active site
216591002038	UGI interface [polypeptide binding]; other site
216591002039	catalytic site [active]
216591002040	HMMPfam hit to PF03167, Uracil DNA glycosylase superfamily, score 2.1e-71
216591002041	PS00130 Uracil-DNA glycosylase signature.
216591002042	Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain; Region: CYTH-like_Pase_CHAD; cd07756
216591002043	putative active site [active]
216591002044	putative metal binding residues [ion binding]; other site
216591002045	signature motif; other site
216591002046	putative triphosphate binding site [ion binding]; other site
216591002047	HMMPfam hit to PF01928, CYTH domain, score 2.2e-40
216591002048	Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the...; Region: IGPS; cd00331
216591002049	active site
216591002050	ribulose/triose binding site [chemical binding]; other site
216591002051	phosphate binding site [ion binding]; other site
216591002052	substrate (anthranilate) binding pocket [chemical binding]; other site
216591002053	product (indole) binding pocket [chemical binding]; other site
216591002054	HMMPfam hit to PF00218, Indole-3-glycerol phosphate synthase, score 8.4e-129
216591002055	PS00614 Indole-3-glycerol phosphate synthase signature.
216591002056	anthranilate phosphoribosyltransferase; Provisional; Region: trpD; PRK00188
216591002057	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
216591002058	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
216591002059	HMMPfam hit to PF00591, Glycosyl transferase family, a/b doma, score 9.1e-126
216591002060	HMMPfam hit to PF02885, Glycosyl transferase family, helical, score 2.6e-09
216591002061	para-aminobenzoate synthase component II; Provisional; Region: PRK08857
216591002062	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
216591002063	glutamine binding [chemical binding]; other site
216591002064	catalytic triad [active]
216591002065	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 5.5e-89
216591002066	PS00442 Glutamine amidotransferases class-I active site.
216591002067	anthranilate synthase component I; Provisional; Region: PRK13565
216591002068	Anthranilate synthase component I, N terminal region; Region: Anth_synt_I_N; pfam04715
216591002069	chorismate binding enzyme; Region: Chorismate_bind; pfam00425
216591002070	HMMPfam hit to PF00425, chorismate binding enzyme, score 4e-154
216591002071	HMMPfam hit to PF04715, Anthranilate synthase component I, N, score 1.6e-53
216591002072	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
216591002073	phosphoglycolate phosphatase; Provisional; Region: PRK13222
216591002074	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591002075	motif II; other site
216591002076	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 7.3e-38
216591002077	Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose...; Region: RPE; cd00429
216591002078	ribulose-phosphate 3-epimerase; Region: rpe; TIGR01163
216591002079	substrate binding site [chemical binding]; other site
216591002080	hexamer interface [polypeptide binding]; other site
216591002081	metal binding site [ion binding]; metal-binding site
216591002082	HMMPfam hit to PF00215, Orotidine 5'-phosphate decarboxylase /, score 0.0029
216591002083	HMMPfam hit to PF00834, Ribulose-phosphate 3 epimerase family, score 4.3e-140
216591002084	PS01086 Ribulose-phosphate 3-epimerase family signature 2.
216591002085	PS01085 Ribulose-phosphate 3-epimerase family signature 1.
216591002086	CO2+/MG2+ efflux protein ApaG; Reviewed; Region: apaG; PRK05461
216591002087	HMMPfam hit to PF04379, Protein of unknown function (DUF525), score 2.3e-50
216591002088	MltA specific insert domain; Region: MltA; smart00925
216591002089	3D domain; Region: 3D; pfam06725
216591002090	1 probable transmembrane helix predicted for BCAL0403 by TMHMM2.0 at aa 12-34
216591002091	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002092	HMMPfam hit to PF03562, MltA N-terminal domain, score 3.9e-83
216591002093	HMMPfam hit to PF06725, 3D domain, score 4.1e-33
216591002094	Phenylacetate-CoA ligase (also known as PaaK); Region: PaaK; cd05913
216591002095	phenylacetate-CoA ligase; Region: PA_CoA_ligase; TIGR02155
216591002096	active site
216591002097	AMP binding site [chemical binding]; other site
216591002098	homodimer interface [polypeptide binding]; other site
216591002099	acyl-activating enzyme (AAE) consensus motif; other site
216591002100	CoA binding site [chemical binding]; other site
216591002101	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
216591002102	CoenzymeA binding site [chemical binding]; other site
216591002103	subunit interaction site [polypeptide binding]; other site
216591002104	PHB binding site; other site
216591002105	HMMPfam hit to PF03061, Thioesterase superfamily, score 9.9e-17
216591002106	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002107	enoyl-CoA hydratase; Provisional; Region: PRK08140
216591002108	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591002109	substrate binding site [chemical binding]; other site
216591002110	oxyanion hole (OAH) forming residues; other site
216591002111	trimer interface [polypeptide binding]; other site
216591002112	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 9.6e-58
216591002113	PS00166 Enoyl-CoA hydratase/isomerase signature.
216591002114	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002115	beta-ketoadipyl CoA thiolase; Validated; Region: PRK09050
216591002116	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591002117	dimer interface [polypeptide binding]; other site
216591002118	active site
216591002119	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 1.7e-62
216591002120	PS00099 Thiolases active site.
216591002121	PS00737 Thiolases signature 2.
216591002122	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 8.2e-101
216591002123	PS00098 Thiolases acyl-enzyme intermediate signature.
216591002124	phenylacetic acid degradation protein paaN; Region: PaaN_2; TIGR02288
216591002125	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
216591002126	NAD(P) binding site [chemical binding]; other site
216591002127	catalytic residues [active]
216591002128	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 2e-10
216591002129	enoyl-CoA hydratase; Provisional; Region: PRK05862
216591002130	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591002131	substrate binding site [chemical binding]; other site
216591002132	oxyanion hole (OAH) forming residues; other site
216591002133	trimer interface [polypeptide binding]; other site
216591002134	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 5.6e-74
216591002135	PS00166 Enoyl-CoA hydratase/isomerase signature.
216591002136	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002137	BcenGI3
216591002138	Transposase; Region: HTH_Tnp_1; pfam01527
216591002139	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591002140	CDS lacks appropriate translational start site. It is likely that this CDS encodes the C-terminal region of a larger protein encompassing the upstream CDS. A translational frameshift possibly occurs after residue 86 of the upstream overlapping CDS
216591002141	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591002142	Probable gene remnant. Similar to the C-terminal region of Verminephrobacter eiseniae hypothetical protein UniProt:Q0XH92 (EMBL:CP000542 (296 aa) fasta scores: E()=1.7e-51, 76.136% id in 176 aa
216591002143	CDS lacks appropriate translational start site. It is likely that this CDS encodes the C-terminal region of a larger protein encompassing the upstream CDS. A translational frameshift possibly occurs after residue 86 of the upstream overlapping CDS
216591002144	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591002145	Transposase; Region: HTH_Tnp_1; pfam01527
216591002146	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591002147	Restriction endonuclease S subunits [Defense mechanisms]; Region: HsdS; COG0732
216591002148	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
216591002149	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
216591002150	HMMPfam hit to PF01420, Type I restriction modification DNA speci, score 1.7e-13
216591002151	HMMPfam hit to PF01420, Type I restriction modification DNA speci, score 4.7e-12
216591002152	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]; Region: COG0610
216591002153	Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; pfam04313
216591002154	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591002155	ATP binding site [chemical binding]; other site
216591002156	putative Mg++ binding site [ion binding]; other site
216591002157	Domain of unknown function (DUF3387); Region: DUF3387; pfam11867
216591002158	HMMPfam hit to PF04313, Type I restriction enzyme R protein N term, score 2.8e-40
216591002159	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 4.1e-07
216591002160	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 0.024
216591002161	DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939
216591002162	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591002163	ATP binding site [chemical binding]; other site
216591002164	Mg2+ binding site [ion binding]; other site
216591002165	G-X-G motif; other site
216591002166	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
216591002167	anchoring element; other site
216591002168	dimer interface [polypeptide binding]; other site
216591002169	ATP binding site [chemical binding]; other site
216591002170	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
216591002171	active site
216591002172	putative metal-binding site [ion binding]; other site
216591002173	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
216591002174	HMMPfam hit to PF00986, DNA gyrase B subunit, carboxyl terminus, score 5.2e-44
216591002175	HMMPfam hit to PF01751, Toprim domain, score 6.1e-06
216591002176	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002177	PS00177 DNA topoisomerase II signature.
216591002178	HMMPfam hit to PF00204, DNA gyrase B, score 2.7e-87
216591002179	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and H, score 1.2e-25
216591002180	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002181	DNA polymerase III subunit beta; Validated; Region: PRK05643
216591002182	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
216591002183	putative DNA binding surface [nucleotide binding]; other site
216591002184	dimer interface [polypeptide binding]; other site
216591002185	beta-clamp/clamp loader binding surface; other site
216591002186	beta-clamp/translesion DNA polymerase binding surface; other site
216591002187	HMMPfam hit to PF02768, DNA polymerase III beta subunit, C-te, score 2e-39
216591002188	HMMPfam hit to PF02767, DNA polymerase III beta subunit, cent, score 7.3e-43
216591002189	HMMPfam hit to PF00712, DNA polymerase III beta subunit, N-te, score 2.3e-29
216591002190	DnaA N-terminal domain; Region: DnaA_N; pfam11638
216591002191	chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149
216591002192	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591002193	Walker A motif; other site
216591002194	ATP binding site [chemical binding]; other site
216591002195	Walker B motif; other site
216591002196	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
216591002197	arginine finger; other site
216591002198	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
216591002199	DnaA box-binding interface [nucleotide binding]; other site
216591002200	HMMPfam hit to PF08299, Bacterial dnaA protein helix-turn-helix, score 9e-43
216591002201	PS01008 DnaA protein signature.
216591002202	HMMPfam hit to PF00308, Bacterial dnaA protein, score 1.5e-120
216591002203	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002204	50S ribosomal protein L34; Reviewed; Region: rpmH; PRK00399
216591002205	Ribonuclease P; Region: Ribonuclease_P; cl00457
216591002206	hypothetical protein; Validated; Region: PRK00041
216591002207	HMMPfam hit to PF01809, Domain of unknown function DUF37, score 6.7e-33
216591002208	membrane protein insertase; Provisional; Region: PRK01318
216591002209	membrane protein insertase, YidC/Oxa1 family, C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592
216591002210	4 probable transmembrane helices predicted for BCAL0426 by TMHMM2.0 at aa 7-24, 364-386, 429-451 and 506-528
216591002211	HMMPfam hit to PF02096, 60Kd inner membrane protein, score 1.8e-105
216591002212	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591002213	non-specific DNA binding site [nucleotide binding]; other site
216591002214	salt bridge; other site
216591002215	sequence-specific DNA binding site [nucleotide binding]; other site
216591002216	tRNA modification GTPase TrmE; Reviewed; Region: trmE; PRK05291
216591002217	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
216591002218	trmE is a tRNA modification GTPase; Region: trmE; cd04164
216591002219	G1 box; other site
216591002220	GTP/Mg2+ binding site [chemical binding]; other site
216591002221	Switch I region; other site
216591002222	G2 box; other site
216591002223	Switch II region; other site
216591002224	G3 box; other site
216591002225	G4 box; other site
216591002226	G5 box; other site
216591002227	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
216591002228	HMMPfam hit to PF01926, GTPase of unknown function, score 2.6e-43
216591002229	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002230	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591002231	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591002232	metal binding site [ion binding]; metal-binding site
216591002233	active site
216591002234	I-site; other site
216591002235	HMMPfam hit to PF00990, GGDEF domain, score 2.4e-59
216591002236	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591002237	7 probable transmembrane helices predicted for BCAL0430 by TMHMM2.0 at aa 13-35, 50-68, 75-97, 112-134, 154-176, 191-213 and 248-270
216591002238	Protein of unknown function (DUF2795); Region: DUF2795; pfam11387
216591002239	1 probable transmembrane helix predicted for BCAL0432 by TMHMM2.0 at aa 5-22
216591002240	spermidine N1-acetyltransferase; Provisional; Region: PRK15130
216591002241	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591002242	Coenzyme A binding pocket [chemical binding]; other site
216591002243	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.2e-19
216591002244	YaeQ protein; Region: YaeQ; pfam07152
216591002245	HMMPfam hit to PF07152, YaeQ protein, score 1.8e-104
216591002246	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_2; cd07253
216591002247	dimer interface [polypeptide binding]; other site
216591002248	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591002249	metal binding site [ion binding]; metal-binding site
216591002250	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 3e-15
216591002251	bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional; Region: PRK15435
216591002252	Metal binding domain of Ada; Region: Ada_Zn_binding; pfam02805
216591002253	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591002254	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; Region: Methyltransf_1N; pfam02870
216591002255	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
216591002256	DNA binding site [nucleotide binding]
216591002257	active site
216591002258	HMMPfam hit to PF02805, Metal binding domain of Ada, score 4e-41
216591002259	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix, score 2.3e-10
216591002260	Predicted helix-turn-helix motif with score 1844.000, SD 5.47 at aa 97-118, sequence LTLQQLSDAVHVSPFHLQRLFK
216591002261	HMMPfam hit to PF02870, 6-O-methylguanine DNA methyltransfera, score 1.6e-12
216591002262	HMMPfam hit to PF01035, 6-O-methylguanine DNA methyltransfera, score 2.4e-47
216591002263	PS00374 Methylated-DNA--protein-cysteine methyltransferase active site.
216591002264	AlkA N-terminal domain; Region: AlkA_N; pfam06029
216591002265	3-methyl-adenine DNA glycosylase II; Provisional; Region: PRK10308
216591002266	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
216591002267	minor groove reading motif; other site
216591002268	helix-hairpin-helix signature motif; other site
216591002269	substrate binding pocket [chemical binding]; other site
216591002270	active site
216591002271	HMMPfam hit to PF06029, AlkA N-terminal domain, score 3e-27
216591002272	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 5.6e-10
216591002273	glutamate--cysteine ligase; Provisional; Region: PRK02107
216591002274	HMMPfam hit to PF04262, Glutamate-cysteine ligase, score 1e-196
216591002275	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591002276	1 probable transmembrane helix predicted for BCAL0440 by TMHMM2.0 at aa 7-25
216591002277	L-lactate permease [Energy production and conversion]; Region: LldP; COG1620
216591002278	L-lactate permease; Region: Lactate_perm; cl00701
216591002279	13 probable transmembrane helices predicted for BCAL0441 by TMHMM2.0 at aa 20-42, 49-68, 83-105, 126-148, 152-174, 179-201, 206-228, 235-257, 307-329, 354-376, 396-418, 425-447 and 510-532
216591002280	HMMPfam hit to PF02652, L-lactate permease, score 6.8e-127
216591002281	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002282	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591002283	aminoethylphosphonate catabolism associated LysR family transcriptional regulator; Region: phn_lysR; TIGR03339
216591002284	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591002285	dimerization interface [polypeptide binding]; other site
216591002286	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.2e-43
216591002287	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.4e-20
216591002288	PS00044 Bacterial regulatory proteins, lysR family signature.
216591002289	Predicted helix-turn-helix motif with score 2007.000, SD 6.02 at aa 15-36, sequence GSITRAARHLGVSQPTIAAQIR
216591002290	phospholipase C, phosphocholine-specific, Pseudomonas-type; Region: PC_PLC; TIGR03396
216591002291	Phosphoesterase family; Region: Phosphoesterase; pfam04185
216591002292	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591002293	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591002294	HMMPfam hit to PF04185, Phosphoesterase family, score 3.2e-125
216591002295	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 1.3e-26
216591002296	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 8.3e-24
216591002297	PS00192 Cytochrome b/b6 heme-ligand signature.
216591002298	phosphonate utilization associated transcriptional regulator; Region: phnR_burk; TIGR03338
216591002299	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591002300	DNA-binding site [nucleotide binding]; DNA binding site
216591002301	FCD domain; Region: FCD; pfam07729
216591002302	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 3.7e-18
216591002303	PS00043 Bacterial regulatory proteins, gntR family signature.
216591002304	Predicted helix-turn-helix motif with score 1208.000, SD 3.30 at aa 41-62, sequence LNEVEIATRLNVSRGPVREAFR
216591002305	HMMPfam hit to PF07729, FCD domain, score 1.4e-26
216591002306	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591002307	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591002308	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1e-80
216591002309	2-aminoethylphosphonate--pyruvate transaminase; Provisional; Region: PRK13479
216591002310	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591002311	catalytic residue [active]
216591002312	HMMPfam hit to PF00266, Aminotransferase class-V, score 4.6e-08
216591002313	putative 2-aminoethylphosphonate ABC transporter, permease protein; Region: PhnU2; TIGR03262
216591002314	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591002315	dimer interface [polypeptide binding]; other site
216591002316	conserved gate region; other site
216591002317	putative PBP binding loops; other site
216591002318	ABC-ATPase subunit interface; other site
216591002319	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591002320	dimer interface [polypeptide binding]; other site
216591002321	conserved gate region; other site
216591002322	putative PBP binding loops; other site
216591002323	ABC-ATPase subunit interface; other site
216591002324	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.00031
216591002325	12 probable transmembrane helices predicted for BCAL0447 by TMHMM2.0 at aa 31-53, 85-107, 120-142, 162-184, 204-226, 261-283, 310-332, 364-386, 399-421, 436-458, 479-501 and 537-559
216591002326	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.00096
216591002327	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591002328	putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; Region: PhnT2; TIGR03265
216591002329	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591002330	Walker A/P-loop; other site
216591002331	ATP binding site [chemical binding]; other site
216591002332	Q-loop/lid; other site
216591002333	ABC transporter signature motif; other site
216591002334	Walker B; other site
216591002335	D-loop; other site
216591002336	H-loop/switch region; other site
216591002337	TOBE domain; Region: TOBE_2; pfam08402
216591002338	HMMPfam hit to PF08402, TOBE domain, score 5.8e-11
216591002339	HMMPfam hit to PF03459, TOBE domain, score 0.00056
216591002340	HMMPfam hit to PF00005, ABC transporter, score 2.5e-63
216591002341	PS00211 ABC transporters family signature.
216591002342	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002343	ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]; Region: TbpA; COG4143
216591002344	putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein; Region: phnS2; TIGR03261
216591002345	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 1.6e-08
216591002346	1 probable transmembrane helix predicted for BCAL0449 by TMHMM2.0 at aa 13-35
216591002347	phosphonoacetate hydrolase; Region: hydr_PhnA; TIGR02335
216591002348	Type I phosphodiesterase / nucleotide pyrophosphatase; Region: Phosphodiest; pfam01663
216591002349	HMMPfam hit to PF01663, Type I phosphodiesterase / nucleotide py, score 7.5e-17
216591002350	putative phosphonoacetaldehyde dehydrogenase; Region: PhnAcAld_DH; TIGR03250
216591002351	Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like; Region: ALDH_PhpJ; cd07146
216591002352	NAD(P) binding site [chemical binding]; other site
216591002353	catalytic residues [active]
216591002354	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 3.6e-178
216591002355	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002356	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591002357	PS00070 Aldehyde dehydrogenases cysteine active site.
216591002358	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591002359	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591002360	substrate binding pocket [chemical binding]; other site
216591002361	membrane-bound complex binding site; other site
216591002362	hinge residues; other site
216591002363	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 4.9e-99
216591002364	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591002365	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591002366	dimer interface [polypeptide binding]; other site
216591002367	conserved gate region; other site
216591002368	putative PBP binding loops; other site
216591002369	ABC-ATPase subunit interface; other site
216591002370	3 probable transmembrane helices predicted for BCAL0453 by TMHMM2.0 at aa 15-37, 58-80 and 188-207
216591002371	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.1e-28
216591002372	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
216591002373	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591002374	Walker A/P-loop; other site
216591002375	ATP binding site [chemical binding]; other site
216591002376	Q-loop/lid; other site
216591002377	ABC transporter signature motif; other site
216591002378	Walker B; other site
216591002379	D-loop; other site
216591002380	H-loop/switch region; other site
216591002381	HMMPfam hit to PF00005, ABC transporter, score 5.2e-64
216591002382	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002383	PS00211 ABC transporters family signature.
216591002384	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591002385	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 6.8e-11
216591002386	Protein of unknown function (DUF1470); Region: DUF1470; pfam07336
216591002387	CGNR zinc finger; Region: zf-CGNR; pfam11706
216591002388	HMMPfam hit to PF07336, Protein of unknown function (DUF1470), score 8.3e-18
216591002389	Protein of unknown function (DUF3592); Region: DUF3592; pfam12158
216591002390	Protein of unknown function (DUF3592); Region: DUF3592; pfam12158
216591002391	4 probable transmembrane helices predicted for BCAL0457 by TMHMM2.0 at aa 7-29, 109-131, 157-179 and 266-288
216591002392	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
216591002393	Thioesterase-like superfamily; Region: 4HBT_3; pfam13622
216591002394	CoenzymeA binding site [chemical binding]; other site
216591002395	subunit interaction site [polypeptide binding]; other site
216591002396	PHB binding site; other site
216591002397	HMMPfam hit to PF03061, Thioesterase superfamily, score 2.2e-15
216591002398	Patatin-like phospholipase; Region: Patatin; pfam01734
216591002399	active site
216591002400	nucleophile elbow; other site
216591002401	Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396
216591002402	HMMPfam hit to PF01734, Patatin-like phospholipase, score 6.3e-06
216591002403	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002404	Putative D-3-Phosphoglycerate Dehydrogenases; Region: PGDH_like_1; cd12169
216591002405	Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Region: SerA; COG0111
216591002406	dimerization interface [polypeptide binding]; other site
216591002407	NAD binding site [chemical binding]; other site
216591002408	ligand binding site [chemical binding]; other site
216591002409	catalytic site [active]
216591002410	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 8.4e-20
216591002411	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 8.1e-67
216591002412	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591002413	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591002414	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591002415	putative effector binding pocket; other site
216591002416	dimerization interface [polypeptide binding]; other site
216591002417	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-18
216591002418	PS00044 Bacterial regulatory proteins, lysR family signature.
216591002419	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.4e-51
216591002420	DNA topoisomerase III; Validated; Region: PRK08173
216591002421	TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving...; Region: TOPRIM_TopoIA_TopoIII; cd03362
216591002422	active site
216591002423	putative interdomain interaction site [polypeptide binding]; other site
216591002424	putative metal-binding site [ion binding]; other site
216591002425	putative nucleotide binding site [chemical binding]; other site
216591002426	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
216591002427	domain I; other site
216591002428	DNA binding groove [nucleotide binding]
216591002429	phosphate binding site [ion binding]; other site
216591002430	domain II; other site
216591002431	domain III; other site
216591002432	nucleotide binding site [chemical binding]; other site
216591002433	catalytic site [active]
216591002434	domain IV; other site
216591002435	C-terminal repeat of topoisomerase; Region: Toprim_Crpt; pfam13342
216591002436	C-terminal repeat of topoisomerase; Region: Toprim_Crpt; pfam13342
216591002437	HMMPfam hit to PF01131, DNA topoisomerase, score 1.8e-100
216591002438	PS00396 Prokaryotic DNA topoisomerase I active site.
216591002439	HMMPfam hit to PF01751, Toprim domain, score 2.6e-14
216591002440	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
216591002441	catalytic residues [active]
216591002442	HMMPfam hit to PF00085, Thioredoxin, score 0.015
216591002443	Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]; Region: Smf; COG0758
216591002444	DNA protecting protein DprA; Region: dprA; TIGR00732
216591002445	HMMPfam hit to PF02481, SMF family, score 2.5e-91
216591002446	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002447	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
216591002448	active site
216591002449	catalytic residues [active]
216591002450	metal binding site [ion binding]; metal-binding site
216591002451	HMMPfam hit to PF01327, Polypeptide deformylase, score 1.6e-71
216591002452	methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005
216591002453	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
216591002454	putative active site [active]
216591002455	substrate binding site [chemical binding]; other site
216591002456	putative cosubstrate binding site; other site
216591002457	catalytic site [active]
216591002458	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
216591002459	substrate binding site [chemical binding]; other site
216591002460	HMMPfam hit to PF00551, Formyl transferase, score 4.7e-49
216591002461	HMMPfam hit to PF02911, Formyl transferase, C-terminal domain, score 4e-29
216591002462	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591002463	5 probable transmembrane helices predicted for BCAL0467 by TMHMM2.0 at aa 4-21, 41-63, 67-89, 121-143 and 153-175
216591002464	HMMPfam hit to PF01810, LysE type translocator, score 1.8e-36
216591002465	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002466	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591002467	M48 family peptidase; Provisional; Region: PRK03001
216591002468	4 probable transmembrane helices predicted for BCAL0468 by TMHMM2.0 at aa 7-26, 30-49, 142-164 and 174-193
216591002469	HMMPfam hit to PF01435, Peptidase family M48, score 1e-22
216591002470	16S rRNA methyltransferase B; Provisional; Region: PRK10901
216591002471	RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the...; Region: NusB_Sun; cl00223
216591002472	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591002473	S-adenosylmethionine binding site [chemical binding]; other site
216591002474	HMMPfam hit to PF01189, NOL1/NOP2/sun family, score 3.3e-65
216591002475	PS01153 NOL1/NOP2/sun family signature.
216591002476	Domain of unknown function (DUF4390); Region: DUF4390; pfam14334
216591002477	1 probable transmembrane helix predicted for BCAL0470 by TMHMM2.0 at aa 7-29
216591002478	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591002479	dimerization interface [polypeptide binding]; other site
216591002480	PAS domain; Region: PAS; smart00091
216591002481	Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852
216591002482	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591002483	dimer interface [polypeptide binding]; other site
216591002484	phosphorylation site [posttranslational modification]
216591002485	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591002486	ATP binding site [chemical binding]; other site
216591002487	Mg2+ binding site [ion binding]; other site
216591002488	G-X-G motif; other site
216591002489	4 probable transmembrane helices predicted for BCAL0471 by TMHMM2.0 at aa 5-27, 39-58, 73-95 and 297-319
216591002490	HMMPfam hit to PF00672, HAMP domain, score 5.3e-16
216591002491	HMMPfam hit to PF08448, PAS fold, score 0.0012
216591002492	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 5.3e-09
216591002493	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 7.9e-28
216591002494	Response regulator receiver domain; Region: Response_reg; pfam00072
216591002495	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591002496	active site
216591002497	phosphorylation site [posttranslational modification]
216591002498	intermolecular recognition site; other site
216591002499	dimerization interface [polypeptide binding]; other site
216591002500	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.8e-36
216591002501	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis family, score 0.0028
216591002502	Predicted helix-turn-helix motif with score 1531.000, SD 4.40 at aa 197-218, sequence GSMRRVAEKTGLERTHLYRKLK
216591002503	ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In...; Region: ExsB; cd01995
216591002504	Ligand Binding Site [chemical binding]; other site
216591002505	HMMPfam hit to PF06508, ExsB, score 1.8e-88
216591002506	Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]; Region: NrdG; COG0602
216591002507	putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; Region: rSAM_QueE_Ecoli; TIGR04322
216591002508	6-pyruvoyl tetrahydropterin synthase; Region: PTPS; pfam01242
216591002509	active site
216591002510	HMMPfam hit to PF01242, 6-pyruvoyl tetrahydropterin synthase, score 4.7e-06
216591002511	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]; Region: HpcH; COG3836
216591002512	HMMPfam hit to PF03328, HpcH/HpaI aldolase/citrate lyase family, score 1.3e-72
216591002513	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591002514	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591002515	Sel1-like repeats; Region: SEL1; smart00671
216591002516	Sel1-like repeats; Region: SEL1; smart00671
216591002517	Sel1-like repeats; Region: SEL1; smart00671
216591002518	HMMPfam hit to PF08238, Sel1 repeat, score 1.3e-07
216591002519	HMMPfam hit to PF08238, Sel1 repeat, score 2.1e-09
216591002520	HMMPfam hit to PF08238, Sel1 repeat, score 8.5e-07
216591002521	HMMPfam hit to PF08238, Sel1 repeat, score 2.7e-06
216591002522	rod shape-determining protein RodA; Region: rodA_shape; TIGR02210
216591002523	HMMPfam hit to PF01098, Cell cycle protein, score 1e-123
216591002524	8 probable transmembrane helices predicted for BCAL0478 by TMHMM2.0 at aa 21-43, 73-95, 135-157, 162-181, 186-203, 286-308, 315-337 and 352-374
216591002525	PS00428 Cell cycle proteins ftsW / rodA / spoVE signature.
216591002526	penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423
216591002527	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
216591002528	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
216591002529	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 5.6e-83
216591002530	HMMPfam hit to PF03717, Penicillin-binding Protein dimerisatio, score 8.8e-47
216591002531	1 probable transmembrane helix predicted for BCAL0479 by TMHMM2.0 at aa 20-39
216591002532	Cell shape-determining protein [Cell envelope biogenesis, outer membrane]; Region: MreD; COG2891
216591002533	HMMPfam hit to PF04093, rod shape-determining protein MreD, score 6e-11
216591002534	3 probable transmembrane helices predicted for BCAL0480 by TMHMM2.0 at aa 13-32, 80-99 and 106-128
216591002535	Cell shape-determining protein [Cell envelope biogenesis, outer membrane]; Region: MreC; COG1792
216591002536	rod shape-determining protein MreC; Region: MreC; pfam04085
216591002537	HMMPfam hit to PF04085, rod shape-determining protein MreC, score 2.7e-33
216591002538	1 probable transmembrane helix predicted for BCAL0481 by TMHMM2.0 at aa 15-32
216591002539	rod shape-determining protein MreB; Provisional; Region: PRK13927
216591002540	MreB and similar proteins; Region: MreB_like; cd10225
216591002541	nucleotide binding site [chemical binding]; other site
216591002542	Mg binding site [ion binding]; other site
216591002543	putative protofilament interaction site [polypeptide binding]; other site
216591002544	RodZ interaction site [polypeptide binding]; other site
216591002545	HMMPfam hit to PF06723, MreB/Mbl protein, score 6.7e-231
216591002546	aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed; Region: gatC; PRK00034
216591002547	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154
216591002548	aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed; Region: gatA; PRK00012
216591002549	HMMPfam hit to PF01425, Amidase, score 1.4e-184
216591002550	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002551	PS00571 Amidases signature.
216591002552	aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated; Region: gatB; PRK05477
216591002553	GatB/GatE catalytic domain; Region: GatB_N; pfam02934
216591002554	GatB domain; Region: GatB_Yqey; smart00845
216591002555	HMMPfam hit to PF02934, PET112 family, N terminal region, score 1e-146
216591002556	PS01234 PET112 family signature.
216591002557	HMMPfam hit to PF01162, PET112 family, C terminal region, score 5.2e-33
216591002558	HMMPfam hit to PF02637, GatB/Yqey domain, score 6.3e-64
216591002559	polyphosphate:nucleotide phosphotransferase, PPK2 family; Region: PPK2_rel_1; TIGR03709
216591002560	HMMPfam hit to PF03976, Polyphosphate kinase, score 2.8e-78
216591002561	Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: Nape_like_AP-endo; cd10281
216591002562	putative active site [active]
216591002563	putative catalytic site [active]
216591002564	putative DNA binding site [nucleotide binding]; other site
216591002565	putative phosphate binding site [ion binding]; other site
216591002566	metal binding site A [ion binding]; metal-binding site
216591002567	putative AP binding site [nucleotide binding]; other site
216591002568	putative metal binding site B [ion binding]; other site
216591002569	HMMPfam hit to PF03372, Endonuclease/Exonuclease/phosphatase fa, score 2.4e-51
216591002570	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
216591002571	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283
216591002572	putative NAD(P) binding site [chemical binding]; other site
216591002573	putative substrate binding site [chemical binding]; other site
216591002574	catalytic Zn binding site [ion binding]; other site
216591002575	structural Zn binding site [ion binding]; other site
216591002576	dimer interface [polypeptide binding]; other site
216591002577	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.6e-35
216591002578	PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
216591002579	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 6.8e-35
216591002580	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591002581	PS00190 Cytochrome c family heme-binding site signature.
216591002582	AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719
216591002583	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591002584	HMMPfam hit to PF06719, AraC-type transcriptional regulator N-termin, score 2.7e-68
216591002585	PS00041 Bacterial regulatory proteins, araC family signature.
216591002586	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.1e-06
216591002587	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.0012
216591002588	Peptidase family M48; Region: Peptidase_M48; cl12018
216591002589	HMMPfam hit to PF01435, Peptidase family M48, score 2.5e-14
216591002590	muropeptide transporter; Reviewed; Region: ampG; PRK11902
216591002591	AmpG-like permease; Region: 2A0125; TIGR00901
216591002592	12 probable transmembrane helices predicted for BCAL0491 by TMHMM2.0 at aa 31-53, 63-80, 100-119, 124-146, 167-184, 189-211, 242-261, 281-303, 310-329, 339-361, 374-396 and 434-456
216591002593	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4e-10
216591002594	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
216591002595	HMMPfam hit to PF07021, Methionine biosynthesis protein MetW, score 2e-118
216591002596	HMMPfam hit to PF08241, Methyltransferase domain, score 5.3e-07
216591002597	HMMPfam hit to PF08242, Methyltransferase domain, score 7.4e-06
216591002598	homoserine O-acetyltransferase; Provisional; Region: metX; PRK00175
216591002599	homoserine O-acetyltransferase; Region: homoserO_Ac_trn; TIGR01392
216591002600	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.4e-13
216591002601	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591002602	division inhibitor protein; Provisional; Region: slmA; PRK09480
216591002603	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591002604	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 2.4e-06
216591002605	Predicted helix-turn-helix motif with score 1850.000, SD 5.49 at aa 48-69, sequence ITTAALAARLDVSEAALYRHFT
216591002606	pyrimidine 5'-nucleotidase; Region: Pyr-5-nucltdase; TIGR01993
216591002607	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1.3e-08
216591002608	AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the...; Region: AAK_NAGK-C; cd04250
216591002609	feedback inhibition sensing region; other site
216591002610	homohexameric interface [polypeptide binding]; other site
216591002611	nucleotide binding site [chemical binding]; other site
216591002612	N-acetyl-L-glutamate binding site [chemical binding]; other site
216591002613	HMMPfam hit to PF00696, Amino acid kinase family, score 9.1e-50
216591002614	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591002615	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591002616	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591002617	dimer interface [polypeptide binding]; other site
216591002618	phosphorylation site [posttranslational modification]
216591002619	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591002620	ATP binding site [chemical binding]; other site
216591002621	Mg2+ binding site [ion binding]; other site
216591002622	G-X-G motif; other site
216591002623	5 probable transmembrane helices predicted for BCAL0497 by TMHMM2.0 at aa 16-38, 43-65, 72-94, 114-136 and 156-173
216591002624	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002625	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 6.2e-05
216591002626	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 4.6e-21
216591002627	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]; Region: COG4567
216591002628	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591002629	active site
216591002630	phosphorylation site [posttranslational modification]
216591002631	intermolecular recognition site; other site
216591002632	dimerization interface [polypeptide binding]; other site
216591002633	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591002634	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.2e-21
216591002635	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis family, score 1.5e-09
216591002636	Predicted helix-turn-helix motif with score 1579.000, SD 4.56 at aa 153-174, sequence NNISATARALNMHRRTLQRKLA
216591002637	ATP-dependent protease ATP-binding subunit HslU; Provisional; Region: hslU; PRK05201
216591002638	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591002639	Walker A motif; other site
216591002640	ATP binding site [chemical binding]; other site
216591002641	AAA domain (Cdc48 subfamily); Region: AAA_2; pfam07724
216591002642	Walker B motif; other site
216591002643	arginine finger; other site
216591002644	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
216591002645	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 1.3e-51
216591002646	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002647	Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the...; Region: protease_HslV; cd01913
216591002648	active site
216591002649	HslU subunit interaction site [polypeptide binding]; other site
216591002650	HMMPfam hit to PF00227, Proteasome A-type and B-type, score 5.7e-32
216591002651	RNA polymerase-binding protein DksA; Region: dksA; TIGR02420
216591002652	HMMPfam hit to PF01258, Prokaryotic dksA/traR C4-type zinc finge, score 6.6e-13
216591002653	Putative GTPases (G3E family) [General function prediction only]; Region: COG0523
216591002654	The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage...; Region: CobW_like; cd03112
216591002655	P-loop, Walker A motif; other site
216591002656	Base recognition motif; other site
216591002657	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; pfam07683
216591002658	HMMPfam hit to PF07683, Cobalamin synthesis protein cobW C-terminal, score 3.2e-33
216591002659	HMMPfam hit to PF02492, CobW/HypB/UreG, nucleotide-binding domain, score 1.4e-76
216591002660	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002661	Predicted SAM-dependent methyltransferases [General function prediction only]; Region: COG1092
216591002662	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase; Region: PUA; smart00359
216591002663	Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; Region: RlmI_M_like; cd11572
216591002664	putative RNA binding site [nucleotide binding]; other site
216591002665	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591002666	S-adenosylmethionine binding site [chemical binding]; other site
216591002667	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002668	site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236
216591002669	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
216591002670	active site
216591002671	DNA binding site [nucleotide binding]
216591002672	Int/Topo IB signature motif; other site
216591002673	HMMPfam hit to PF00589, Phage integrase family, score 1.4e-39
216591002674	HMMPfam hit to PF02899, Phage integrase, N-terminal SAM-like, score 1.6e-19
216591002675	Protein of unknown function, DUF484; Region: DUF484; cl17449
216591002676	HMMPfam hit to PF04340, Protein of unknown function, DUF484, score 5.4e-12
216591002677	diaminopimelate epimerase; Provisional; Region: dapF; PRK00450
216591002678	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
216591002679	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
216591002680	HMMPfam hit to PF01678, Diaminopimelate epimerase, score 2.4e-40
216591002681	HMMPfam hit to PF01678, Diaminopimelate epimerase, score 8.2e-46
216591002682	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
216591002683	putative acyl-acceptor binding pocket; other site
216591002684	HMMPfam hit to PF03279, Bacterial lipid A biosynthesis acyltr, score 3.1e-40
216591002685	S-adenosylmethionine synthetase; Validated; Region: PRK05250
216591002686	S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438
216591002687	S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772
216591002688	S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773
216591002689	HMMPfam hit to PF00438, S-adenosylmethionine synthetase, N-te, score 3.8e-51
216591002690	HMMPfam hit to PF02772, S-adenosylmethionine synthetase, cent, score 3.8e-72
216591002691	PS00376 S-adenosylmethionine synthetase signature 1.
216591002692	HMMPfam hit to PF02773, S-adenosylmethionine synthetase, C-te, score 9.1e-87
216591002693	PS00377 S-adenosylmethionine synthetase signature 2.
216591002694	Phytanoyl-CoA dioxygenase (PhyH); Region: PhyH; cl17312
216591002695	HMMPfam hit to PF05721, Phytanoyl-CoA dioxygenase (PhyH), score 4.4e-36
216591002696	Protein of unknown function (DUF3185); Region: DUF3185; pfam11381
216591002697	2 probable transmembrane helices predicted for BCAL0512 by TMHMM2.0 at aa 5-24 and 44-66
216591002698	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591002699	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591002700	active site
216591002701	catalytic tetrad [active]
216591002702	HMMPfam hit to PF00248, Aldo/keto reductase family, score 1.3e-74
216591002703	2 probable transmembrane helices predicted for BCAL0514 by TMHMM2.0 at aa 5-27 and 40-59
216591002704	EamA-like transporter family; Region: EamA; pfam00892
216591002705	10 probable transmembrane helices predicted for BCAL0515 by TMHMM2.0 at aa 7-26, 36-58, 71-90, 94-115, 122-144, 148-170, 182-204, 208-230, 239-261 and 266-288
216591002706	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.1e-15
216591002707	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002708	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.1e-07
216591002709	Putative homoserine kinase type II (protein kinase fold) [General function prediction only]; Region: COG2334
216591002710	serine/threonine protein kinase; Provisional; Region: PRK11768
216591002711	HMMPfam hit to PF01636, Phosphotransferase enzyme family, score 2e-31
216591002712	NAD-dependent aldehyde dehydrogenases [Energy production and conversion]; Region: PutA; COG1012
216591002713	Coniferyl aldehyde dehydrogenase-like; Region: ALDH_CALDH_CalB; cd07133
216591002714	NAD(P) binding site [chemical binding]; other site
216591002715	catalytic residues [active]
216591002716	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 2.4e-56
216591002717	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591002718	choline dehydrogenase; Validated; Region: PRK02106
216591002719	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591002720	HMMPfam hit to PF00732, GMC oxidoreductase, score 1e-99
216591002721	PS00624 GMC oxidoreductases signature 2.
216591002722	HMMPfam hit to PF05199, GMC oxidoreductase, score 2.9e-54
216591002723	Flagellar hook-length control protein FliK; Region: Flg_hook; pfam02120
216591002724	HMMPfam hit to PF02120, Flagellar hook-length control protein, score 1.7e-19
216591002725	Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]; Region: FliJ; COG2882
216591002726	flagellar biosynthesis chaperone; Validated; Region: fliJ; PRK05689
216591002727	HMMPfam hit to PF02050, Flagellar FliJ protein, score 2.1e-11
216591002728	flagellar protein export ATPase FliI; Region: FliI_clade1; TIGR03496
216591002729	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
216591002730	Walker A motif/ATP binding site; other site
216591002731	Walker B motif; other site
216591002732	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleotid, score 2.2e-120
216591002733	PS00152 ATP synthase alpha and beta subunits signature.
216591002734	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002735	flagellar assembly protein H; Validated; Region: fliH; PRK05687
216591002736	Flagellar assembly protein FliH; Region: FliH; pfam02108
216591002737	HMMPfam hit to PF02108, Flagellar assembly protein FliH, score 3.2e-15
216591002738	flagellar motor switch protein G; Validated; Region: fliG; PRK05686
216591002739	FliG C-terminal domain; Region: FliG_C; pfam01706
216591002740	HMMPfam hit to PF01706, FliG C-terminal domain, score 1.5e-53
216591002741	flagellar MS-ring protein; Reviewed; Region: fliF; PRK06007
216591002742	Secretory protein of YscJ/FliF family; Region: YscJ_FliF; pfam01514
216591002743	Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345
216591002744	HMMPfam hit to PF08345, Flagellar M-ring protein C-terminal, score 6e-94
216591002745	HMMPfam hit to PF01514, Secretory protein of YscJ/FliF family, score 1.6e-81
216591002746	1 probable transmembrane helix predicted for BCAL0525 by TMHMM2.0 at aa 60-79
216591002747	Flagellar hook-basal body complex protein FliE; Region: FliE; cl09139
216591002748	HMMPfam hit to PF02049, Flagellar hook-basal body complex protein Fl, score 1.3e-25
216591002749	Flagellar protein FliS; Region: FliS; cl00654
216591002750	HMMPfam hit to PF02561, Flagellar protein FliS, score 7.4e-27
216591002751	Flagellar protein FliT; Region: FliT; cl05125
216591002752	Flagellar hook-length control protein FliK; Region: Flg_hook; pfam02120
216591002753	PS00012 Phosphopantetheine attachment site.
216591002754	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257
216591002755	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3295
216591002756	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.14
216591002757	3 probable transmembrane helices predicted for BCAL0531 by TMHMM2.0 at aa 53-75, 195-217 and 226-243
216591002758	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.38
216591002759	Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]; Region: XdhC; COG1975
216591002760	XdhC and CoxI family; Region: XdhC_CoxI; pfam02625
216591002761	XdhC Rossmann domain; Region: XdhC_C; pfam13478
216591002762	HMMPfam hit to PF02625, XdhC and CoxI family, score 3.5e-19
216591002763	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002764	amino acid transporter; Region: 2A0306; TIGR00909
216591002765	C-terminus of AA_permease; Region: AA_permease_C; pfam13906
216591002766	HMMPfam hit to PF00324, Amino acid permease, score 3.7e-27
216591002767	12 probable transmembrane helices predicted for BCAL0533 by TMHMM2.0 at aa 30-52, 57-76, 83-105, 154-176, 183-205, 220-242, 255-277, 301-323, 349-371, 375-397, 410-429 and 434-453
216591002768	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002769	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002770	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591002771	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591002772	active site
216591002773	phosphorylation site [posttranslational modification]
216591002774	intermolecular recognition site; other site
216591002775	dimerization interface [polypeptide binding]; other site
216591002776	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591002777	DNA binding residues [nucleotide binding]
216591002778	dimerization interface [polypeptide binding]; other site
216591002779	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 4.2e-12
216591002780	Predicted helix-turn-helix motif with score 1219.000, SD 3.34 at aa 165-186, sequence KRLTDIANTLSLSVKTVSVYRS
216591002781	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.9e-38
216591002782	Histidine kinase-like ATPase domain; Region: HATPase_c_2; pfam13581
216591002783	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591002784	ATP binding site [chemical binding]; other site
216591002785	Mg2+ binding site [ion binding]; other site
216591002786	G-X-G motif; other site
216591002787	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 9.7e-18
216591002788	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
216591002789	Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently...; Region: FNR1; cd06195
216591002790	FAD binding pocket [chemical binding]; other site
216591002791	FAD binding motif [chemical binding]; other site
216591002792	phosphate binding motif [ion binding]; other site
216591002793	beta-alpha-beta structure motif; other site
216591002794	NAD binding pocket [chemical binding]; other site
216591002795	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 0.00081
216591002796	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 0.00059
216591002797	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
216591002798	putative catalytic site [active]
216591002799	putative phosphate binding site [ion binding]; other site
216591002800	putative metal binding site [ion binding]; other site
216591002801	HMMPfam hit to PF03372, Endonuclease/Exonuclease/phosphatase fa, score 9.7e-10
216591002802	Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source...; Region: Nitroreductase; cd02136
216591002803	putative FMN binding site [chemical binding]; other site
216591002804	HMMPfam hit to PF00881, Nitroreductase family, score 3.9e-22
216591002805	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591002806	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591002807	ATP binding site [chemical binding]; other site
216591002808	Walker B motif; other site
216591002809	arginine finger; other site
216591002810	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 4.5e-15
216591002811	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 2e-06
216591002812	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002813	Predicted dehydrogenase [General function prediction only]; Region: COG0579
216591002814	hydroxyglutarate oxidase; Provisional; Region: PRK11728
216591002815	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 5.9e-73
216591002816	High potential iron-sulfur protein; Region: HIPIP; pfam01355
216591002817	HMMPfam hit to PF01355, High potential iron-sulfur protein, score 1.3e-25
216591002818	PS00596 High potential iron-sulfur proteins signature.
216591002819	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591002820	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591002821	putative substrate translocation pore; other site
216591002822	HMMPfam hit to PF00083, Sugar (and other) transporter, score 1.3e-26
216591002823	12 probable transmembrane helices predicted for BCAL0543 by TMHMM2.0 at aa 21-43, 63-85, 92-111, 115-137, 158-180, 195-212, 249-271, 281-303, 310-330, 340-362, 375-397 and 407-426
216591002824	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.4e-21
216591002825	PS00217 Sugar transport proteins signature 2.
216591002826	PS00216 Sugar transport proteins signature 1.
216591002827	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
216591002828	The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493
216591002829	peptide binding site [polypeptide binding]; other site
216591002830	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 2.3e-87
216591002831	PS01040 Bacterial extracellular solute-binding proteins, family 5 signature.
216591002832	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
216591002833	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591002834	dimer interface [polypeptide binding]; other site
216591002835	conserved gate region; other site
216591002836	putative PBP binding loops; other site
216591002837	ABC-ATPase subunit interface; other site
216591002838	6 probable transmembrane helices predicted for BCAL0545 by TMHMM2.0 at aa 9-31, 100-122, 143-165, 198-220, 256-278 and 306-328
216591002839	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.3e-63
216591002840	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591002841	dipeptide transporter; Provisional; Region: PRK10913
216591002842	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591002843	dimer interface [polypeptide binding]; other site
216591002844	conserved gate region; other site
216591002845	putative PBP binding loops; other site
216591002846	ABC-ATPase subunit interface; other site
216591002847	5 probable transmembrane helices predicted for BCAL0546 by TMHMM2.0 at aa 34-56, 106-128, 143-165, 226-248 and 268-290
216591002848	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.1e-51
216591002849	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591002850	dipeptide transporter ATP-binding subunit; Provisional; Region: dppD; PRK11022
216591002851	Walker A/P-loop; other site
216591002852	ATP binding site [chemical binding]; other site
216591002853	Q-loop/lid; other site
216591002854	ABC transporter signature motif; other site
216591002855	Walker B; other site
216591002856	D-loop; other site
216591002857	H-loop/switch region; other site
216591002858	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591002859	HMMPfam hit to PF00005, ABC transporter, score 9e-61
216591002860	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002861	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 7.9e-25
216591002862	dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308
216591002863	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591002864	Walker A/P-loop; other site
216591002865	ATP binding site [chemical binding]; other site
216591002866	Q-loop/lid; other site
216591002867	ABC transporter signature motif; other site
216591002868	Walker B; other site
216591002869	D-loop; other site
216591002870	H-loop/switch region; other site
216591002871	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Region: oligo_HPY; TIGR01727
216591002872	HMMPfam hit to PF00005, ABC transporter, score 1.1e-65
216591002873	PS00017 ATP/GTP-binding site motif A (P-loop).
216591002874	PS00211 ABC transporters family signature.
216591002875	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 4.7e-30
216591002876	TraB family; Region: TraB; pfam01963
216591002877	HMMPfam hit to PF07446, GumN protein, score 1.3e-18
216591002878	Escherichia coli putative lactam utilization protein YbgL and similar proteins; Region: LamB_YcsF_YbgL_like; cd10800
216591002879	putative active site [active]
216591002880	HMMPfam hit to PF03746, LamB/YcsF family, score 3.7e-138
216591002881	Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]; Region: DUR1; COG1984
216591002882	HMMPfam hit to PF02626, Allophanate hydrolase subunit, score 2.5e-100
216591002883	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002884	Allophanate hydrolase subunit 1; Region: AHS1; smart00796
216591002885	Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; COG2049
216591002886	HMMPfam hit to PF02682, Allophanate hydrolase subunit, score 1.2e-100
216591002887	MarR family; Region: MarR_2; cl17246
216591002888	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591002889	HMMPfam hit to PF01047, MarR family, score 0.0015
216591002890	5-formyltetrahydrofolate cyclo-ligase family; Region: 5-FTHF_cyc-lig; pfam01812
216591002891	5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]; Region: COG0212; cl00360
216591002892	HMMPfam hit to PF01812, 5-formyltetrahydrofolate cyclo-ligase, score 1.9e-27
216591002893	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
216591002894	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591002895	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591002896	catalytic residue [active]
216591002897	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002898	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 4.8e-20
216591002899	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs; Region: NDUFA9_like_SDR_a; cd05271
216591002900	NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370
216591002901	putative NAD(P) binding site [chemical binding]; other site
216591002902	active site
216591002903	HMMPfam hit to PF04321, RmlD substrate binding domain, score 0.003
216591002904	HMMPfam hit to PF05368, NmrA-like family, score 2e-05
216591002905	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.8e-13
216591002906	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 9.6e-08
216591002907	HMMPfam hit to PF07993, Male sterility protein, score 0.00024
216591002908	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002909	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591002910	GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with...; Region: GST_N_1; cd03043
216591002911	putative C-terminal domain interface [polypeptide binding]; other site
216591002912	putative GSH binding site (G-site) [chemical binding]; other site
216591002913	putative dimer interface [polypeptide binding]; other site
216591002914	C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases; Region: GST_C_3; cd03194
216591002915	putative N-terminal domain interface [polypeptide binding]; other site
216591002916	putative dimer interface [polypeptide binding]; other site
216591002917	putative substrate binding pocket (H-site) [chemical binding]; other site
216591002918	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 1.8e-08
216591002919	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed; Region: cca; PRK10885
216591002920	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
216591002921	active site
216591002922	NTP binding site [chemical binding]; other site
216591002923	metal binding triad [ion binding]; metal-binding site
216591002924	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
216591002925	CRISPR/Cas system-associated protein Cas3'' Region: Cas3''_I; cl17503
216591002926	HMMPfam hit to PF01743, Poly A polymerase family, score 2.8e-40
216591002927	HMMPfam hit to PF01966, HD domain, score 8.2e-07
216591002928	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591002929	sequence-specific DNA binding site [nucleotide binding]; other site
216591002930	salt bridge; other site
216591002931	Cupin domain; Region: Cupin_2; pfam07883
216591002932	HMMPfam hit to PF07883, Cupin domain, score 5.6e-19
216591002933	HMMPfam hit to PF01381, Helix-turn-helix, score 2.6e-08
216591002934	Predicted helix-turn-helix motif with score 1258.000, SD 3.47 at aa 21-42, sequence KTLLEVATEANLSVGFLSQVER
216591002935	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
216591002936	Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006
216591002937	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cl00279
216591002938	active site
216591002939	HMMPfam hit to PF00557, metallopeptidase family M24, score 4.3e-18
216591002940	PS00491 Aminopeptidase P and proline dipeptidase signature.
216591002941	PS00294 Prenyl group binding site (CAAX box).
216591002942	FlgN protein; Region: FlgN; pfam05130
216591002943	HMMPfam hit to PF05130, FlgN protein, score 1.8e-06
216591002944	flagellar biosynthesis anti-sigma factor FlgM; Region: FlgM_jcvi; TIGR03824
216591002945	SAF-like; Region: SAF_2; pfam13144
216591002946	SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; Region: SAF_CpaB_FlgA_like; cd11614
216591002947	HMMPfam hit to PF03240, FlgA family, score 4.4e-40
216591002948	flagellar basal body rod protein FlgB; Provisional; Region: flgB; PRK12626
216591002949	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK07182
216591002950	HMMPfam hit to PF00460, Flagella basal body rod protein, score 3.4e-07
216591002951	PS00588 Flagella basal body rod proteins signature.
216591002952	flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK05681
216591002953	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
216591002954	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
216591002955	HMMPfam hit to PF00460, Flagella basal body rod protein, score 1.7e-10
216591002956	PS00588 Flagella basal body rod proteins signature.
216591002957	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 1.3e-10
216591002958	flagellar basal body rod modification protein; Reviewed; Region: flgD; PRK06655
216591002959	Flagellar hook capping protein - N-terminal region; Region: FlgD; pfam03963
216591002960	FlgD Tudor-like domain; Region: FLgD_tudor; pfam13861
216591002961	HMMPfam hit to PF03963, Flagellar hook capping protein, score 3.1e-33
216591002962	flagellar hook protein FlgE; Validated; Region: flgE; PRK05682
216591002963	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
216591002964	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
216591002965	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
216591002966	HMMPfam hit to PF00460, Flagella basal body rod protein, score 7.8e-10
216591002967	PS00588 Flagella basal body rod proteins signature.
216591002968	HMMPfam hit to PF07559, Flagellar basal body protein FlaE, score 7e-20
216591002969	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 1.3e-16
216591002970	flagellar basal body rod protein FlgF; Reviewed; Region: flgF; PRK12640
216591002971	flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490
216591002972	HMMPfam hit to PF00460, Flagella basal body rod protein, score 2.5e-10
216591002973	PS00588 Flagella basal body rod proteins signature.
216591002974	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 3.8e-05
216591002975	flagellar basal body rod protein FlgG; Reviewed; Region: flgG; PRK12694
216591002976	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
216591002977	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
216591002978	HMMPfam hit to PF00460, Flagella basal body rod protein, score 1.7e-13
216591002979	PS00588 Flagella basal body rod proteins signature.
216591002980	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 5.7e-20
216591002981	flagellar basal body L-ring protein; Reviewed; Region: flgH; PRK12697
216591002982	Flagellar basal body L-ring protein [Cell motility and secretion]; Region: FlgH; COG2063
216591002983	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002984	HMMPfam hit to PF02107, Flagellar L-ring protein, score 9.9e-64
216591002985	flagellar basal body P-ring protein; Provisional; Region: flgI; PRK05303
216591002986	flagellar basal body P-ring protein; Reviewed; Region: flgI; cl14622
216591002987	1 probable transmembrane helix predicted for BCAL0571 by TMHMM2.0 at aa 21-43
216591002988	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002989	HMMPfam hit to PF02119, Flagellar P-ring protein, score 2.4e-186
216591002990	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591002991	flagellar rod assembly protein/muramidase FlgJ; Provisional; Region: flgJ; PRK12709
216591002992	Rod binding protein [Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]; Region: COG3951
216591002993	Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlgJ; COG1705
216591002994	HMMPfam hit to PF01832, Mannosyl-glycoprotein endo-beta-N-ace, score 2.3e-39
216591002995	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591002996	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
216591002997	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
216591002998	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
216591002999	HMMPfam hit to PF01609, Transposase DDE domain, score 3.6e-32
216591003000	Flagellar regulator YcgR; Region: YcgR; pfam07317
216591003001	c-di-GMP-binding protein [Signal transduction mechanisms]; Region: COG5581
216591003002	PilZ domain; Region: PilZ; pfam07238
216591003003	HMMPfam hit to PF07317, YcgR protein, score 6.7e-65
216591003004	HMMPfam hit to PF07238, PilZ domain, score 1.3e-15
216591003005	flagellar hook-associated protein FlgK; Validated; Region: flgK; PRK06945
216591003006	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
216591003007	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 7.2e-17
216591003008	flagellar hook-associated protein FlgL; Reviewed; Region: flgL; PRK08870
216591003009	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
216591003010	HMMPfam hit to PF00669, Bacterial flagellin N-terminus, score 1.1e-12
216591003011	pyrimidine utilization transport protein G; Region: RutG; TIGR03616
216591003012	HMMPfam hit to PF00860, Permease family, score 4.3e-114
216591003013	11 probable transmembrane helices predicted for BCAL0578 by TMHMM2.0 at aa 53-75, 80-102, 112-134, 141-163, 173-190, 197-219, 243-265, 286-308, 323-345, 352-374 and 403-425
216591003014	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003015	PS01116 Xanthine/uracil permeases family signature.
216591003016	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591003017	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591003018	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591003019	dimerization interface [polypeptide binding]; other site
216591003020	substrate binding pocket [chemical binding]; other site
216591003021	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.8e-42
216591003022	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4e-18
216591003023	PS00044 Bacterial regulatory proteins, lysR family signature.
216591003024	Predicted helix-turn-helix motif with score 1587.000, SD 4.59 at aa 21-42, sequence ESFSAAGDELHVTHGAISRQIA
216591003025	Chromate transporter; Region: Chromate_transp; pfam02417
216591003026	HMMPfam hit to PF02417, Chromate transporter, score 4.5e-23
216591003027	4 probable transmembrane helices predicted for BCAL0580 by TMHMM2.0 at aa 25-47, 95-117, 127-149 and 162-184
216591003028	Chromate transporter; Region: Chromate_transp; pfam02417
216591003029	HMMPfam hit to PF02417, Chromate transporter, score 3.7e-17
216591003030	5 probable transmembrane helices predicted for BCAL0581 by TMHMM2.0 at aa 5-27, 47-69, 76-98, 113-135 and 156-173
216591003031	PS01036 Heat shock hsp70 proteins family signature 3.
216591003032	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003033	1 probable transmembrane helix predicted for BCAL0582 by TMHMM2.0 at aa 7-26
216591003034	Protein of unknown function (DUF1275); Region: DUF1275; pfam06912
216591003035	HMMPfam hit to PF06912, Protein of unknown function (DUF1275), score 1.3e-42
216591003036	6 probable transmembrane helices predicted for BCAL0583 by TMHMM2.0 at aa 13-35, 55-77, 90-112, 116-138, 173-195 and 199-216
216591003037	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591003038	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591003039	trimer interface [polypeptide binding]; other site
216591003040	eyelet of channel; other site
216591003041	HMMPfam hit to PF00267, Gram-negative porin, score 5.8e-05
216591003042	glutathione reductase; Validated; Region: PRK06116
216591003043	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591003044	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591003045	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
216591003046	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 7.3e-58
216591003047	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.
216591003048	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 1.3e-28
216591003049	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 7.9e-53
216591003050	Curli production assembly/transport component CsgG; Region: CsgG; pfam03783
216591003051	HMMPfam hit to PF03783, Curli production assembly/transport componen, score 4.3e-80
216591003052	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003053	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003054	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4259
216591003055	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003056	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4380
216591003057	HMMPfam hit to PF05643, Putative bacterial lipoprotein (DUF799), score 4.3e-68
216591003058	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003059	putative transposase OrfB; Reviewed; Region: PHA02517
216591003060	HTH-like domain; Region: HTH_21; pfam13276
216591003061	Integrase core domain; Region: rve; pfam00665
216591003062	Integrase core domain; Region: rve_2; pfam13333
216591003063	HMMPfam hit to PF00665, Integrase core domain, score 3.8e-47
216591003064	Predicted helix-turn-helix motif with score 1108.000, SD 2.96 at aa 8-29, sequence HPVAALLKAAGLARSTFYYQLK
216591003065	PS00228 Tubulin-beta mRNA autoregulation signal.
216591003066	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591003067	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591003068	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591003069	HMMPfam hit to PF02178, AT hook motif, score 0.016
216591003070	Predicted helix-turn-helix motif with score 1069.000, SD 2.83 at aa 21-42, sequence AGTKTLAHRYGVGRTMVRRWAA
216591003071	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591003072	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591003073	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 9.4e-102
216591003074	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003075	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591003076	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591003077	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.7e-93
216591003078	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591003079	Protein of unknown function (DUF3138); Region: DUF3138; pfam11336
216591003080	Outer membrane protein family (DUF1597); Region: DUF1597; pfam07642
216591003081	1 probable transmembrane helix predicted for BCAL0594 by TMHMM2.0 at aa 5-27
216591003082	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
216591003083	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591003084	dimer interface [polypeptide binding]; other site
216591003085	conserved gate region; other site
216591003086	putative PBP binding loops; other site
216591003087	ABC-ATPase subunit interface; other site
216591003088	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.7e-10
216591003089	7 probable transmembrane helices predicted for BCAL0595 by TMHMM2.0 at aa 10-32, 66-88, 103-125, 138-160, 180-202, 209-231 and 241-263
216591003090	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591003091	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591003092	dimer interface [polypeptide binding]; other site
216591003093	conserved gate region; other site
216591003094	putative PBP binding loops; other site
216591003095	ABC-ATPase subunit interface; other site
216591003096	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.6e-19
216591003097	6 probable transmembrane helices predicted for BCAL0596 by TMHMM2.0 at aa 30-52, 105-127, 134-156, 186-208, 240-259 and 286-308
216591003098	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591003099	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591003100	putrescine transporter ATP-binding subunit; Provisional; Region: potG; PRK11607
216591003101	Walker A/P-loop; other site
216591003102	ATP binding site [chemical binding]; other site
216591003103	Q-loop/lid; other site
216591003104	ABC transporter signature motif; other site
216591003105	Walker B; other site
216591003106	D-loop; other site
216591003107	H-loop/switch region; other site
216591003108	TOBE domain; Region: TOBE_2; pfam08402
216591003109	HMMPfam hit to PF08402, TOBE domain, score 1e-22
216591003110	HMMPfam hit to PF00005, ABC transporter, score 1.8e-61
216591003111	PS00211 ABC transporters family signature.
216591003112	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003113	putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional; Region: PRK10682
216591003114	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
216591003115	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 3.9e-13
216591003116	putative aminotransferase; Validated; Region: PRK07480
216591003117	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591003118	inhibitor-cofactor binding pocket; inhibition site
216591003119	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591003120	catalytic residue [active]
216591003121	HMMPfam hit to PF00202, Aminotransferase class-III, score 2.2e-94
216591003122	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591003123	Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174
216591003124	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
216591003125	HMMPfam hit to PF00120, Glutamine synthetase, catalytic domain, score 1.5e-118
216591003126	Peptidase C26; Region: Peptidase_C26; pfam07722
216591003127	Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_2; cd01745
216591003128	catalytic triad [active]
216591003129	HMMPfam hit to PF07722, Peptidase C26, score 2.5e-105
216591003130	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591003131	DNA-binding transcriptional repressor PuuR; Provisional; Region: PRK09943
216591003132	non-specific DNA binding site [nucleotide binding]; other site
216591003133	salt bridge; other site
216591003134	sequence-specific DNA binding site [nucleotide binding]; other site
216591003135	Cupin domain; Region: Cupin_2; pfam07883
216591003136	HMMPfam hit to PF01381, Helix-turn-helix, score 1.3e-14
216591003137	Predicted helix-turn-helix motif with score 1970.000, SD 5.90 at aa 24-45, sequence LSQRELAKRAGVTNGTISLIEQ
216591003138	HMMPfam hit to PF07883, Cupin domain, score 5e-17
216591003139	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional; Region: PRK09847
216591003140	Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like; Region: ALDH_GABALDH-PuuC; cd07112
216591003141	NAD(P) binding site [chemical binding]; other site
216591003142	catalytic residues [active]
216591003143	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 2.1e-240
216591003144	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591003145	PS00070 Aldehyde dehydrogenases cysteine active site.
216591003146	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
216591003147	metal-binding site [ion binding]
216591003148	HMMPfam hit to PF00403, Heavy-metal-associated domain, score 2.2e-09
216591003149	PS01047 Heavy-metal-associated domain.
216591003150	Cupredoxin-like domain; Region: Cupredoxin_1; pfam13473
216591003151	Iron permease FTR1 family; Region: FTR1; cl00475
216591003152	HMMPfam hit to PF03239, Iron permease FTR1 family, score 5.2e-17
216591003153	6 probable transmembrane helices predicted for BCAL0606 by TMHMM2.0 at aa 34-53, 68-87, 108-125, 150-172, 185-207 and 243-265
216591003154	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003155	Predicted transcriptional regulator [Transcription]; Region: COG2944
216591003156	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591003157	non-specific DNA binding site [nucleotide binding]; other site
216591003158	salt bridge; other site
216591003159	sequence-specific DNA binding site [nucleotide binding]; other site
216591003160	Predicted helix-turn-helix motif with score 1964.000, SD 5.88 at aa 60-81, sequence VSQSVFALYLNTTTSTIRQWEQ
216591003161	Protein of unknown function (DUF1044); Region: DUF1044; pfam06296
216591003162	HMMPfam hit to PF06296, Protein of unknown function (DUF1044), score 1.5e-46
216591003163	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
216591003164	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
216591003165	glutaminase active site [active]
216591003166	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
216591003167	dimer interface [polypeptide binding]; other site
216591003168	active site
216591003169	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
216591003170	dimer interface [polypeptide binding]; other site
216591003171	active site
216591003172	HMMPfam hit to PF01380, SIS domain, score 3.7e-28
216591003173	HMMPfam hit to PF01380, SIS domain, score 3.6e-29
216591003174	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 1.2e-45
216591003175	PS00443 Glutamine amidotransferases class-II active site.
216591003176	N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]; Region: GlmU; COG1207
216591003177	N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540
216591003178	Substrate binding site; other site
216591003179	Mg++ binding site; other site
216591003180	N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353
216591003181	active site
216591003182	substrate binding site [chemical binding]; other site
216591003183	CoA binding site [chemical binding]; other site
216591003184	PS00101 Hexapeptide-repeat containing-transferases signature.
216591003185	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 0.98
216591003186	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 34
216591003187	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 25
216591003188	PS00101 Hexapeptide-repeat containing-transferases signature.
216591003189	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 3.3
216591003190	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 1.4
216591003191	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 0.2
216591003192	HMMPfam hit to PF00483, Nucleotidyl transferase, score 2e-09
216591003193	HMMPfam hit to PF01128, Uncharacterized protein family UPF000, score 0.00024
216591003194	tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional; Region: PRK10696
216591003195	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_II; cd01993
216591003196	Ligand Binding Site [chemical binding]; other site
216591003197	HMMPfam hit to PF01171, PP-loop family, score 2.3e-08
216591003198	Dihydroneopterin aldolase; Region: FolB; smart00905
216591003199	active site
216591003200	Probable gene remnant. Similar to the C-terminal regions of Burkholderia ambifaria AMMD hypothetical protein UniProt:Q3FJS9 (EMBL:AAJL01000001) (247 aa) fasta scores: E()=5.1e-56, 92.135% id in 178 aa, and Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus) short-chain dehydrogenase/reductase UniProt:Q476S6 (EMBL:CP000090) (277 aa) fasta scores: E()=1.6e-09, 38.679% id in 212 aa
216591003201	Uncharacterized conserved protein [Function unknown]; Region: COG1565
216591003202	HMMPfam hit to PF02636, Uncharacterized ACR, COG1565, score 2.2e-66
216591003203	HMMPfam hit to PF08242, Methyltransferase domain, score 0.0012
216591003204	Protein of unknown function (DUF2905); Region: DUF2905; pfam11146
216591003205	2 probable transmembrane helices predicted for BCAL0616a by TMHMM2.0 at aa 5-23 and 43-60
216591003206	Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into...; Region: bac_FRK; cd01167
216591003207	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591003208	putative substrate binding site [chemical binding]; other site
216591003209	putative ATP binding site [chemical binding]; other site
216591003210	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 1.9e-37
216591003211	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003212	PS00584 pfkB family of carbohydrate kinases signature 2.
216591003213	Predicted helix-turn-helix motif with score 1038.000, SD 2.72 at aa 175-196, sequence EKMAALADLIKVSDEDLRHLFG
216591003214	PS00583 pfkB family of carbohydrate kinases signature 1.
216591003215	AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is...; Region: AGE; cd00249
216591003216	dimerization interface [polypeptide binding]; other site
216591003217	putative active cleft [active]
216591003218	HMMPfam hit to PF07221, N-acylglucosamine 2-epimerase (GlcNAc, score 4.3e-139
216591003219	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591003220	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591003221	DNA binding site [nucleotide binding]
216591003222	domain linker motif; other site
216591003223	Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily; Region: PBP1_LacI_sugar_binding_like; cd06267
216591003224	ligand binding site [chemical binding]; other site
216591003225	dimerization interface [polypeptide binding]; other site
216591003226	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 9.3e-10
216591003227	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 1.3e-07
216591003228	Predicted helix-turn-helix motif with score 1986.000, SD 5.95 at aa 3-24, sequence TTIRDVARAAEVSIGTVSRALK
216591003229	PS00356 Bacterial regulatory proteins, lacI family signature.
216591003230	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591003231	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and...; Region: CBS_pair_GGDEF_assoc; cd04598
216591003232	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591003233	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591003234	metal binding site [ion binding]; metal-binding site
216591003235	active site
216591003236	I-site; other site
216591003237	HMMPfam hit to PF00990, GGDEF domain, score 1.4e-05
216591003238	HMMPfam hit to PF00571, CBS domain pair, score 0.0011
216591003239	HMMPfam hit to PF00563, EAL domain, score 1.6e-30
216591003240	Predicted Na+-dependent transporter [General function prediction only]; Region: COG0385
216591003241	SBF-like CPA transporter family (DUF4137); Region: DUF4137; pfam13593
216591003242	9 probable transmembrane helices predicted for BCAL0622 by TMHMM2.0 at aa 7-26, 30-52, 65-87, 97-119, 131-153, 163-185, 197-216, 231-253 and 285-307
216591003243	PS00904 Protein prenyltransferases alpha subunit repeat signature.
216591003244	HMMPfam hit to PF01758, Sodium Bile acid symporter family, score 8.8e-05
216591003245	1 probable transmembrane helix predicted for BCAL0623 by TMHMM2.0 at aa 12-31
216591003246	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591003247	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591003248	eyelet of channel; other site
216591003249	trimer interface [polypeptide binding]; other site
216591003250	HMMPfam hit to PF00267, Gram-negative porin, score 0.00044
216591003251	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591003252	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591003253	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591003254	putative effector binding pocket; other site
216591003255	dimerization interface [polypeptide binding]; other site
216591003256	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.6e-11
216591003257	PS00044 Bacterial regulatory proteins, lysR family signature.
216591003258	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.8e-52
216591003259	Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]; Region: COG2070
216591003260	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
216591003261	FMN binding site [chemical binding]; other site
216591003262	substrate binding site [chemical binding]; other site
216591003263	putative catalytic residue [active]
216591003264	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, score 2e-12
216591003265	alpha/beta hydrolase fold; Region: Abhydrolase_1; pfam00561
216591003266	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.9e-10
216591003267	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591003268	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591003269	dimerization interface [polypeptide binding]; other site
216591003270	putative DNA binding site [nucleotide binding]; other site
216591003271	putative Zn2+ binding site [ion binding]; other site
216591003272	AsnC family; Region: AsnC_trans_reg; pfam01037
216591003273	HMMPfam hit to PF01037, AsnC family, score 9.7e-16
216591003274	PS00519 Bacterial regulatory proteins, asnC family signature.
216591003275	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
216591003276	EamA-like transporter family; Region: EamA; cl17759
216591003277	10 probable transmembrane helices predicted for BCAL0629 by TMHMM2.0 at aa 9-27, 37-59, 68-90, 95-117, 124-142, 157-174, 181-203, 213-235, 240-262 and 266-288
216591003278	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.2e-05
216591003279	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.4e-18
216591003280	Protein of unknown function (DUF1289); Region: DUF1289; pfam06945
216591003281	HMMPfam hit to PF06945, Protein of unknown function (DUF1289), score 1.2e-14
216591003282	This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro)...; Region: ProX_deacylase; cd04333
216591003283	putative deacylase active site [active]
216591003284	HMMPfam hit to PF04073, YbaK / prolyl-tRNA synthetases associated do, score 5.7e-25
216591003285	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591003286	Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Region: LeuA; COG0119
216591003287	3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; Region: DRE_TIM_HMGL; cd07938
216591003288	active site
216591003289	catalytic residues [active]
216591003290	metal binding site [ion binding]; metal-binding site
216591003291	HMMPfam hit to PF00682, HMGL-like, score 3.4e-74
216591003292	PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site.
216591003293	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003294	bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional; Region: ghrA; PRK15469
216591003295	Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; Region: GDH_like_2; cd12164
216591003296	putative ligand binding site [chemical binding]; other site
216591003297	NAD binding site [chemical binding]; other site
216591003298	dimerization interface [polypeptide binding]; other site
216591003299	catalytic site [active]
216591003300	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydro, score 8.5e-48
216591003301	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 0.0006
216591003302	Serine hydrolase; Region: Ser_hydrolase; pfam06821
216591003303	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591003304	HMMPfam hit to PF06821, Alpha/Beta hydrolase family of unknown funct, score 1.5e-65
216591003305	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003306	4-hydroxybenzoyl-CoA reductase, gamma subunit; Region: 4hydroxCoAred; TIGR03193
216591003307	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591003308	catalytic loop [active]
216591003309	iron binding site [ion binding]; other site
216591003310	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591003311	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 1.2e-09
216591003312	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591003313	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 1.6e-36
216591003314	PS00070 Aldehyde dehydrogenases cysteine active site.
216591003315	FAD binding domain in molybdopterin dehydrogenase; Region: FAD_binding_5; pfam00941
216591003316	CO dehydrogenase flavoprotein C-terminal domain; Region: CO_deh_flav_C; smart01092
216591003317	HMMPfam hit to PF00941, FAD binding domain in molybdopterin deh, score 2.3e-88
216591003318	HMMPfam hit to PF03450, CO dehydrogenase flavoprotein C-termina, score 0.00013
216591003319	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591003320	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591003321	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591003322	HMMPfam hit to PF01315, Aldehyde oxidase and xanthine dehydroge, score 8.8e-20
216591003323	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 1.1e-74
216591003324	Predicted helix-turn-helix motif with score 1009.000, SD 2.62 at aa 211-232, sequence GTSAAVAAVFGIAPEQVRVISP
216591003325	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003326	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591003327	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591003328	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591003329	dimerization interface [polypeptide binding]; other site
216591003330	substrate binding pocket [chemical binding]; other site
216591003331	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.2e-36
216591003332	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-17
216591003333	PS00044 Bacterial regulatory proteins, lysR family signature.
216591003334	Predicted helix-turn-helix motif with score 1624.000, SD 4.72 at aa 22-43, sequence QSFTRAADELALTQGAVSQHIR
216591003335	GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens; Region: GST_N_Beta; cd03057
216591003336	C-terminal domain interface [polypeptide binding]; other site
216591003337	GSH binding site (G-site) [chemical binding]; other site
216591003338	dimer interface [polypeptide binding]; other site
216591003339	C-terminal, alpha helical domain of Class Beta Glutathione S-transferases; Region: GST_C_Beta; cd03188
216591003340	dimer interface [polypeptide binding]; other site
216591003341	substrate binding pocket (H-site) [chemical binding]; other site
216591003342	N-terminal domain interface [polypeptide binding]; other site
216591003343	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 1e-11
216591003344	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591003345	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591003346	12 probable transmembrane helices predicted for BCAL0640 by TMHMM2.0 at aa 23-45, 60-82, 91-113, 123-142, 163-180, 185-207, 242-264, 274-296, 309-331, 336-358, 365-387 and 402-421
216591003347	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.1e-50
216591003348	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591003349	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591003350	dimerization interface [polypeptide binding]; other site
216591003351	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.2e-14
216591003352	Predicted helix-turn-helix motif with score 1107.000, SD 2.96 at aa 44-65, sequence GSFAKAADRVARSSSAVSAQIR
216591003353	PS00044 Bacterial regulatory proteins, lysR family signature.
216591003354	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-26
216591003355	PIN domain of the VapC-like Sll0205 protein and homologs; Region: PIN_Sll0205; cd09872
216591003356	putative active site [active]
216591003357	HMMPfam hit to PF01850, PIN domain, score 2.7e-10
216591003358	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
216591003359	Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950
216591003360	dimer interface [polypeptide binding]; other site
216591003361	active site
216591003362	catalytic residue [active]
216591003363	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 5.9e-56
216591003364	PS00666 Dihydrodipicolinate synthetase signature 2.
216591003365	ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: Sbp; COG1613
216591003366	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
216591003367	PS00782 Transcription factor TFIIB repeat signature.
216591003368	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 3.8e-06
216591003369	Inward rectifier potassium channel; Region: IRK; pfam01007
216591003370	HMMPfam hit to PF01007, Inward rectifier potassium channel, score 7e-17
216591003371	PS00041 Bacterial regulatory proteins, araC family signature.
216591003372	3 probable transmembrane helices predicted for BCAL0646 by TMHMM2.0 at aa 61-83, 93-112 and 124-146
216591003373	HMMPfam hit to PF07885, Ion channel, score 3e-14
216591003374	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591003375	GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved...; Region: GST_N_GTT1_like; cd03046
216591003376	putative C-terminal domain interface [polypeptide binding]; other site
216591003377	putative GSH binding site (G-site) [chemical binding]; other site
216591003378	putative dimer interface [polypeptide binding]; other site
216591003379	C-terminal, alpha helical domain of an unknown subfamily 8 of Glutathione S-transferases; Region: GST_C_8; cd03207
216591003380	dimer interface [polypeptide binding]; other site
216591003381	N-terminal domain interface [polypeptide binding]; other site
216591003382	putative substrate binding pocket (H-site) [chemical binding]; other site
216591003383	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 3.5e-14
216591003384	CDS contains a frameshift after codon 78. Similar to Rhizobium leguminosarum bv. viciae nodulation protein L NodL UniProt:P08632 (EMBL:RLNODLGEE) (190 aa) fasta scores: E()=1.1e-16, 40.881% id in 159 aa
216591003385	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.2
216591003386	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.0018
216591003387	PS00101 Hexapeptide-repeat containing-transferases signature.
216591003388	2-oxoacid ferredoxin oxidoreductase; Provisional; Region: PRK13030
216591003389	Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034
216591003390	dimer interface [polypeptide binding]; other site
216591003391	PYR/PP interface [polypeptide binding]; other site
216591003392	TPP binding site [chemical binding]; other site
216591003393	substrate binding site [chemical binding]; other site
216591003394	Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as...; Region: TPP_IOR_alpha; cd02008
216591003395	TPP-binding site; other site
216591003396	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [Energy production and conversion]; Region: PorG; COG1014
216591003397	HMMPfam hit to PF01558, Pyruvate ferredoxin/flavodoxin oxidoreductas, score 1.5e-05
216591003398	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003399	Na+/H+ antiporter, bacterial form; Region: a_cpa1; TIGR00831
216591003400	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
216591003401	Predicted helix-turn-helix motif with score 1002.000, SD 2.60 at aa 565-586, sequence ETLTKLIREIDLSETALSTRKK
216591003402	HMMPfam hit to PF00999, Sodium/hydrogen exchanger family, score 4.8e-62
216591003403	13 probable transmembrane helices predicted for BCAL0651 by TMHMM2.0 at aa 24-46, 53-75, 90-107, 120-142, 148-170, 191-213, 218-240, 253-270, 275-294, 315-337, 350-372, 395-417 and 432-454
216591003404	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591003405	HMMPfam hit to PF00563, EAL domain, score 1.2e-35
216591003406	4 probable transmembrane helices predicted for BCAL0653 by TMHMM2.0 at aa 5-27, 42-64, 76-93 and 98-115
216591003407	4 probable transmembrane helices predicted for BCAL0654 by TMHMM2.0 at aa 7-29, 39-61, 68-90 and 110-132
216591003408	CutC family; Region: CutC; cl01218
216591003409	HMMPfam hit to PF03932, CutC family, score 6.7e-47
216591003410	Suppressor of fused protein (SUFU); Region: SUFU; pfam05076
216591003411	Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456
216591003412	12 probable transmembrane helices predicted for BCAL0657 by TMHMM2.0 at aa 34-56, 61-83, 95-117, 137-159, 166-188, 198-220, 241-263, 273-295, 327-346, 350-372, 393-412 and 417-439
216591003413	Allophanate hydrolase subunit 2; Region: AHS2; smart00797
216591003414	HMMPfam hit to PF02626, Allophanate hydrolase subunit, score 1.4e-74
216591003415	Allophanate hydrolase subunit 1; Region: AHS1; smart00796
216591003416	Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; COG2049
216591003417	HMMPfam hit to PF02682, Allophanate hydrolase subunit, score 5.4e-07
216591003418	acetyl-CoA carboxylase biotin carboxylase subunit; Provisional; Region: PRK12833
216591003419	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
216591003420	ATP-grasp domain; Region: ATP-grasp_4; cl17255
216591003421	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
216591003422	HMMPfam hit to PF02785, Biotin carboxylase C-terminal domain, score 2.3e-55
216591003423	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 8e-102
216591003424	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591003425	HMMPfam hit to PF02222, ATP-grasp domain, score 0.003
216591003426	PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
216591003427	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 5.9e-40
216591003428	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
216591003429	carboxyltransferase (CT) interaction site; other site
216591003430	biotinylation site [posttranslational modification]; other site
216591003431	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 1.5e-21
216591003432	hypothetical protein; Provisional; Region: PRK12569
216591003433	HMMPfam hit to PF03746, LamB/YcsF family, score 2e-125
216591003434	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591003435	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591003436	The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_PAO1_like; cd08412
216591003437	putative substrate binding pocket [chemical binding]; other site
216591003438	dimerization interface [polypeptide binding]; other site
216591003439	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.9e-19
216591003440	Predicted helix-turn-helix motif with score 1384.000, SD 3.90 at aa 18-39, sequence GQISQAAIQLTISQSAVTSAIK
216591003441	PS00044 Bacterial regulatory proteins, lysR family signature.
216591003442	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.4e-45
216591003443	biotin synthase; Region: bioB; TIGR00433
216591003444	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591003445	FeS/SAM binding site; other site
216591003446	Biotin and Thiamin Synthesis associated domain; Region: BATS; smart00876
216591003447	HMMPfam hit to PF06968, Biotin and Thiamin Synthesis associated d, score 9.9e-45
216591003448	HMMPfam hit to PF04055, Radical SAM superfamily, score 3e-26
216591003449	dithiobiotin synthetase; Reviewed; Region: bioD; PRK00090
216591003450	AAA domain; Region: AAA_26; pfam13500
216591003451	8-amino-7-oxononanoate synthase; Reviewed; Region: PRK05958
216591003452	pyridoxal phosphate-dependent acyltransferase, putative; Region: gly_Cac_T_rel; TIGR01825
216591003453	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591003454	catalytic residue [active]
216591003455	HMMPfam hit to PF00155, Aminotransferase class I and II, score 2.4e-68
216591003456	HMMPfam hit to PF00202, Aminotransferase class-III, score 0.27
216591003457	adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional; Region: PRK06943
216591003458	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591003459	inhibitor-cofactor binding pocket; inhibition site
216591003460	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591003461	catalytic residue [active]
216591003462	HMMPfam hit to PF00202, Aminotransferase class-III, score 9.5e-117
216591003463	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591003464	PS00436 Peroxidases active site signature.
216591003465	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
216591003466	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
216591003467	hypothetical protein; Provisional; Region: PRK01842
216591003468	C factor cell-cell signaling protein; Provisional; Region: PRK09009
216591003469	carbonyl reductase sniffer-like, classical (c) SDRs; Region: carb_red_sniffer_like_SDR_c; cd05325
216591003470	NADP binding site [chemical binding]; other site
216591003471	homodimer interface [polypeptide binding]; other site
216591003472	active site
216591003473	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.6e-07
216591003474	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeA; cd00883
216591003475	active site clefts [active]
216591003476	zinc binding site [ion binding]; other site
216591003477	dimer interface [polypeptide binding]; other site
216591003478	HMMPfam hit to PF00484, Carbonic anhydrase, score 5.1e-36
216591003479	PS00704 Prokaryotic-type carbonic anhydrases signature 1.
216591003480	bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated; Region: aceK; PRK02946
216591003481	Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms]; Region: COG4579
216591003482	HMMPfam hit to PF06315, Isocitrate dehydrogenase kinase/phosphatase, score 0
216591003483	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
216591003484	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 3.4e-23
216591003485	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
216591003486	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591003487	Walker A/P-loop; other site
216591003488	ATP binding site [chemical binding]; other site
216591003489	ABC transporter signature motif; other site
216591003490	Walker B; other site
216591003491	D-loop; other site
216591003492	H-loop/switch region; other site
216591003493	ABC transporter; Region: ABC_tran_2; pfam12848
216591003494	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591003495	HMMPfam hit to PF00005, ABC transporter, score 3.7e-33
216591003496	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003497	HMMPfam hit to PF00005, ABC transporter, score 1.9e-32
216591003498	PS00211 ABC transporters family signature.
216591003499	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003500	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
216591003501	The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493
216591003502	peptide binding site [polypeptide binding]; other site
216591003503	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 9.1e-85
216591003504	short chain dehydrogenase; Provisional; Region: PRK07024
216591003505	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591003506	NAD(P) binding site [chemical binding]; other site
216591003507	active site
216591003508	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.5e-21
216591003509	PS00061 Short-chain dehydrogenases/reductases family signature.
216591003510	DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol...; Region: DsbA_DsbA; cd03019
216591003511	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
216591003512	catalytic residues [active]
216591003513	hinge region; other site
216591003514	alpha helical domain; other site
216591003515	HMMPfam hit to PF01323, DSBA-like thioredoxin domain, score 7.3e-12
216591003516	PS00194 Thioredoxin family active site.
216591003517	Sporulation related domain; Region: SPOR; pfam05036
216591003518	HMMPfam hit to PF05036, Sporulation related domain, score 1.6e-20
216591003519	1 probable transmembrane helix predicted for BCAL0678 by TMHMM2.0 at aa 2-19
216591003520	arginyl-tRNA synthetase; Reviewed; Region: argS; PRK01611
216591003521	Arginyl tRNA synthetase N terminal dom; Region: Arg_tRNA_synt_N; smart01016
216591003522	catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671
216591003523	active site
216591003524	HIGH motif; other site
216591003525	KMSK motif region; other site
216591003526	Anticodon-binding domain of arginyl tRNA synthetases; Region: Anticodon_Ia_Arg; cd07956
216591003527	tRNA binding surface [nucleotide binding]; other site
216591003528	anticodon binding site; other site
216591003529	HMMPfam hit to PF05746, DALR anticodon binding domain, score 4.8e-44
216591003530	HMMPfam hit to PF00750, tRNA synthetases class I (R), score 1.5e-67
216591003531	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591003532	HMMPfam hit to PF03485, Arginyl tRNA synthetase N terminal do, score 2e-23
216591003533	Domain of unknown function (DUF1840); Region: DUF1840; pfam08895
216591003534	Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]; Region: MetH; COG1410
216591003535	MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  Cobalamin-dependent...; Region: MeTr; cd00740
216591003536	substrate binding pocket [chemical binding]; other site
216591003537	B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy); Region: methionine_synthase_B12_BD; cd02069
216591003538	B12 binding site [chemical binding]; other site
216591003539	cobalt ligand [ion binding]; other site
216591003540	Vitamin B12 dependent methionine synthase, activation domain; Region: Met_synt_B12; pfam02965
216591003541	HMMPfam hit to PF02965, Vitamin B12 dependent methionine syntha, score 2.3e-65
216591003542	HMMPfam hit to PF02310, B12 binding domain, score 2e-22
216591003543	HMMPfam hit to PF02607, B12 binding domain, score 3.9e-42
216591003544	HMMPfam hit to PF00809, Pterin binding enzyme, score 3.2e-72
216591003545	Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]; Region: MetH; COG0646
216591003546	Homocysteine S-methyltransferase; Region: S-methyl_trans; pfam02574
216591003547	HMMPfam hit to PF02574, Homocysteine S-methyltransferase, score 1e-144
216591003548	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003549	Protein of unknown function (DUF3567); Region: DUF3567; pfam12091
216591003550	Protein of unknown function (DUF3108); Region: DUF3108; pfam11306
216591003551	1 probable transmembrane helix predicted for BCAL0684 by TMHMM2.0 at aa 35-57
216591003552	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591003553	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591003554	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 0.002
216591003555	PS00043 Bacterial regulatory proteins, gntR family signature.
216591003556	Predicted helix-turn-helix motif with score 1287.000, SD 3.57 at aa 52-73, sequence MMLRDLAQRAGMSPAKAHRYLV
216591003557	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
216591003558	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591003559	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 1.8e-07
216591003560	Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Region: CaiD; COG1024
216591003561	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591003562	substrate binding site [chemical binding]; other site
216591003563	oxyanion hole (OAH) forming residues; other site
216591003564	trimer interface [polypeptide binding]; other site
216591003565	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 6.6e-21
216591003566	PS00166 Enoyl-CoA hydratase/isomerase signature.
216591003567	Hypothetical patatin similar to Z1214 protein of Escherichia coli; Region: Pat_hypo_Ecoli_Z1214_like; cd07209
216591003568	active site
216591003569	nucleophile elbow; other site
216591003570	HMMPfam hit to PF01734, Patatin-like phospholipase, score 2.5e-11
216591003571	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cl00264
216591003572	dinuclear metal binding motif [ion binding]; other site
216591003573	rfaE bifunctional protein, domain II; Region: rfaE_dom_II; TIGR02199
216591003574	Cytidylyltransferase; Region: CTP_transf_2; pfam01467
216591003575	active site
216591003576	HIGH motif; other site
216591003577	nucleotide binding site [chemical binding]; other site
216591003578	HMMPfam hit to PF01467, Cytidylyltransferase, score 8.4e-23
216591003579	1 probable transmembrane helix predicted for BCAL0692 by TMHMM2.0 at aa 2-24
216591003580	pantothenate kinase; Reviewed; Region: PRK13328
216591003581	HMMPfam hit to PF03309, Bordetella pertussis Bvg accessory fac, score 4.4e-12
216591003582	biotin--protein ligase; Provisional; Region: PRK06955
216591003583	Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057
216591003584	Biotin protein ligase C terminal domain; Region: BPL_C; pfam02237
216591003585	HMMPfam hit to PF02237, Biotin protein ligase C terminal domain, score 7.2e-09
216591003586	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003587	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase famil, score 3.5e-07
216591003588	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591003589	HMMPfam hit to PF08238, Sel1 repeat, score 6.3e-06
216591003590	HMMPfam hit to PF08238, Sel1 repeat, score 7.6e-06
216591003591	HMMPfam hit to PF08238, Sel1 repeat, score 1e-05
216591003592	1 probable transmembrane helix predicted for BCAL0695 by TMHMM2.0 at aa 21-43
216591003593	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed; Region: cpdB; PRK09420
216591003594	Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain; Region: MPP_CpdB_N; cd07410
216591003595	active site
216591003596	metal binding site [ion binding]; metal-binding site
216591003597	5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872
216591003598	HMMPfam hit to PF02872, 5'-nucleotidase, C-terminal domain, score 1.5e-39
216591003599	Predicted helix-turn-helix motif with score 985.000, SD 2.54 at aa 544-565, sequence FTSADLAYEIDVTQPVGSRIRN
216591003600	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003601	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 4.1e-11
216591003602	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003603	PS00786 5'-nucleotidase signature 2.
216591003604	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591003605	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003606	ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2B; COG0767
216591003607	Permease; Region: Permease; pfam02405
216591003608	HMMPfam hit to PF02405, Domain of unknown function DUF140, score 2e-55
216591003609	5 probable transmembrane helices predicted for BCAL0697 by TMHMM2.0 at aa 163-185, 198-220, 269-291, 304-326 and 346-368
216591003610	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003611	ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127
216591003612	ATP-binding cassette transport system involved in resistant to organic solvents; Region: ABC_Org_Solvent_Resistant; cd03261
216591003613	Walker A/P-loop; other site
216591003614	ATP binding site [chemical binding]; other site
216591003615	Q-loop/lid; other site
216591003616	ABC transporter signature motif; other site
216591003617	Walker B; other site
216591003618	D-loop; other site
216591003619	H-loop/switch region; other site
216591003620	HMMPfam hit to PF00005, ABC transporter, score 1.4e-54
216591003621	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003622	ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463
216591003623	mce related protein; Region: MCE; pfam02470
216591003624	1 probable transmembrane helix predicted for BCAL0699 by TMHMM2.0 at aa 7-29
216591003625	HMMPfam hit to PF02470, mce related protein, score 1.9e-17
216591003626	Protein of unknown function (DUF330); Region: DUF330; pfam03886
216591003627	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003628	Predicted integral membrane protein [Function unknown]; Region: COG5652
216591003629	10 probable transmembrane helices predicted for BCAL0701 by TMHMM2.0 at aa 17-39, 54-76, 81-103, 118-140, 160-182, 224-246, 253-275, 280-302, 309-331 and 346-368
216591003630	Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:...; Region: TRX_Fd_family; cd02980
216591003631	dimer interface [polypeptide binding]; other site
216591003632	[2Fe-2S] cluster binding site [ion binding]; other site
216591003633	Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: COG2945
216591003634	D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686
216591003635	Beta-lactamase enzyme family; Region: Beta-lactamase2; cl17872
216591003636	Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; smart00936
216591003637	HMMPfam hit to PF00144, Beta-lactamase, score 0.00033
216591003638	HMMPfam hit to PF00768, D-alanyl-D-alanine carboxypeptidase, score 6.4e-97
216591003639	HMMPfam hit to PF07943, Penicillin-binding protein 5, C-termin, score 9.7e-29
216591003640	D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and...; Region: D-AAT_like; cd01558
216591003641	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
216591003642	homodimer interface [polypeptide binding]; other site
216591003643	substrate-cofactor binding pocket; other site
216591003644	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591003645	catalytic residue [active]
216591003646	HMMPfam hit to PF01063, Aminotransferase class IV, score 1.6e-59
216591003647	hypothetical protein; Provisional; Region: PRK02047
216591003648	HMMPfam hit to PF04359, Protein of unknown function (DUF493), score 1.5e-35
216591003649	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591003650	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591003651	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591003652	dimerization interface [polypeptide binding]; other site
216591003653	substrate binding pocket [chemical binding]; other site
216591003654	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.9e-42
216591003655	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.1e-21
216591003656	PS00044 Bacterial regulatory proteins, lysR family signature.
216591003657	Predicted helix-turn-helix motif with score 1399.000, SD 3.95 at aa 22-43, sequence ENFSRAADELFVTHGAVSHQVR
216591003658	Protein of unknown function (DUF2917); Region: DUF2917; pfam11142
216591003659	lipoate-protein ligase B; Provisional; Region: PRK14343
216591003660	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase famil, score 1.6e-12
216591003661	PS00141 Eukaryotic and viral aspartyl proteases active site.
216591003662	PS01313 Lipoate-protein ligase B signature.
216591003663	lipoyl synthase; Provisional; Region: PRK05481
216591003664	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591003665	FeS/SAM binding site; other site
216591003666	HMMPfam hit to PF04055, Radical SAM superfamily, score 2.8e-25
216591003667	ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: TauA; COG4521
216591003668	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591003669	substrate binding pocket [chemical binding]; other site
216591003670	membrane-bound complex binding site; other site
216591003671	hinge residues; other site
216591003672	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 2.7e-06
216591003673	taurine transporter ATP-binding subunit; Provisional; Region: tauB; PRK11248
216591003674	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591003675	Walker A/P-loop; other site
216591003676	ATP binding site [chemical binding]; other site
216591003677	Q-loop/lid; other site
216591003678	ABC transporter signature motif; other site
216591003679	Walker B; other site
216591003680	D-loop; other site
216591003681	H-loop/switch region; other site
216591003682	HMMPfam hit to PF00005, ABC transporter, score 5.7e-57
216591003683	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003684	PS00211 ABC transporters family signature.
216591003685	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591003686	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591003687	dimer interface [polypeptide binding]; other site
216591003688	conserved gate region; other site
216591003689	putative PBP binding loops; other site
216591003690	ABC-ATPase subunit interface; other site
216591003691	6 probable transmembrane helices predicted for BCAL0713 by TMHMM2.0 at aa 45-64, 107-129, 141-163, 168-187, 231-253 and 263-285
216591003692	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.2e-30
216591003693	Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; COG0405
216591003694	Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019
216591003695	HMMPfam hit to PF01019, Gamma-glutamyltranspeptidase, score 8.4e-187
216591003696	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591003697	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591003698	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591003699	putative effector binding pocket; other site
216591003700	dimerization interface [polypeptide binding]; other site
216591003701	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.5e-41
216591003702	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.2e-16
216591003703	PS00044 Bacterial regulatory proteins, lysR family signature.
216591003704	Predicted helix-turn-helix motif with score 1750.000, SD 5.15 at aa 16-37, sequence GNLSKAAQRLKMSRANVSYRLN
216591003705	multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154
216591003706	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591003707	substrate binding site [chemical binding]; other site
216591003708	oxyanion hole (OAH) forming residues; other site
216591003709	trimer interface [polypeptide binding]; other site
216591003710	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
216591003711	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591003712	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591003713	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 7.8e-55
216591003714	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, score 5.5e-80
216591003715	PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2.
216591003716	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 1.9e-32
216591003717	pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204
216591003718	Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Region: ACAD_fadE6_17_26; cd01152
216591003719	FAD binding site [chemical binding]; other site
216591003720	substrate binding site [chemical binding]; other site
216591003721	catalytic base [active]
216591003722	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 2.4e-24
216591003723	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 2.7e-27
216591003724	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591003725	pimeloyl-CoA dehydrogenase, small subunit; Region: pimD_small; TIGR03203
216591003726	Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771
216591003727	Acyl-CoA dehydrogenase; Region: ACAD; cd00567
216591003728	active site
216591003729	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 5.6e-06
216591003730	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 1.4e-16
216591003731	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 0.0021
216591003732	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591003733	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591003734	HMMPfam hit to PF02515, CoA-transferase family III, score 2.6e-65
216591003735	PS00213 Lipocalin signature.
216591003736	Protein of unknown function, DUF485; Region: DUF485; pfam04341
216591003737	HMMPfam hit to PF04341, Protein of unknown function, DUF485, score 8.4e-24
216591003738	2 probable transmembrane helices predicted for BCAL0720 by TMHMM2.0 at aa 25-47 and 62-84
216591003739	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003740	Predicted symporter [General function prediction only]; Region: DhlC; COG4147
216591003741	Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain; Region: SLC5sbd_u4; cd11480
216591003742	Na binding site [ion binding]; other site
216591003743	14 probable transmembrane helices predicted for BCAL0721 by TMHMM2.0 at aa 7-26, 36-58, 79-101, 106-128, 148-170, 180-202, 215-237, 267-289, 301-323, 373-395, 416-438, 443-465, 472-491 and 506-528
216591003744	HMMPfam hit to PF00474, Sodium:solute symporter family, score 1.2e-132
216591003745	C4-dicarboxylate transporter DctA; Reviewed; Region: PRK01663
216591003746	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
216591003747	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 1.5e-172
216591003748	8 probable transmembrane helices predicted for BCAL0722 by TMHMM2.0 at aa 7-25, 40-57, 70-92, 137-159, 179-201, 216-238, 307-329 and 344-366
216591003749	PS00713 Sodium:dicarboxylate symporter family signature 1.
216591003750	PS00714 Sodium:dicarboxylate symporter family signature 2.
216591003751	Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191
216591003752	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591003753	dimer interface [polypeptide binding]; other site
216591003754	phosphorylation site [posttranslational modification]
216591003755	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591003756	ATP binding site [chemical binding]; other site
216591003757	G-X-G motif; other site
216591003758	2 probable transmembrane helices predicted for BCAL0723 by TMHMM2.0 at aa 43-65 and 331-349
216591003759	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003760	PS00210 Arthropod hemocyanins / insect LSPs signature 2.
216591003761	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.4e-07
216591003762	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.1e-31
216591003763	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
216591003764	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591003765	active site
216591003766	phosphorylation site [posttranslational modification]
216591003767	intermolecular recognition site; other site
216591003768	dimerization interface [polypeptide binding]; other site
216591003769	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591003770	Walker A motif; other site
216591003771	ATP binding site [chemical binding]; other site
216591003772	Walker B motif; other site
216591003773	arginine finger; other site
216591003774	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591003775	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.8e-32
216591003776	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 1.3e-139
216591003777	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591003778	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591003779	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591003780	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 3.8e-11
216591003781	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
216591003782	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591003783	catalytic residues [active]
216591003784	HMMPfam hit to PF08534, Redoxin, score 9.8e-37
216591003785	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003786	1 probable transmembrane helix predicted for BCAL0725 by TMHMM2.0 at aa 12-34
216591003787	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003788	Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]; Region: COG0606
216591003789	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
216591003790	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase; pfam01078
216591003791	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase_2; pfam13335
216591003792	HMMPfam hit to PF01078, Magnesium chelatase, subunit ChlI, score 5.3e-143
216591003793	HMMPfam hit to PF07728, ATPase family associated with various ce, score 8.3e-05
216591003794	PS00017 ATP/GTP-binding site motif A (P-loop).
216591003795	Membrane fusogenic activity; Region: BMFP; pfam04380
216591003796	HMMPfam hit to PF04380, Protein of unknown function (DUF526), score 8.3e-27
216591003797	Nitrogen regulatory protein PII [Amino acid transport and metabolism]; Region: GlnK; COG0347
216591003798	Nitrogen regulatory protein P-II; Region: P-II; smart00938
216591003799	HMMPfam hit to PF00543, Nitrogen regulatory protein P-II, score 1.9e-70
216591003800	PS00496 P-II protein urydylation site.
216591003801	PS00638 P-II protein C-terminal region signature.
216591003802	Ammonia permease [Inorganic ion transport and metabolism]; Region: AmtB; COG0004
216591003803	HMMPfam hit to PF00909, Ammonium Transporter Family, score 1.6e-156
216591003804	11 probable transmembrane helices predicted for BCAL0730 by TMHMM2.0 at aa 98-120, 127-149, 195-217, 222-244, 259-281, 294-313, 328-350, 355-374, 378-400, 413-432 and 442-464
216591003805	PS01219 Ammonium transporters signature.
216591003806	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003807	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003808	glutamate--cysteine ligase, T. ferrooxidans family; Region: gshA_ferroox; TIGR02049
216591003809	Glutamate-cysteine ligase; Region: GshA; pfam08886
216591003810	glutathione synthetase; Provisional; Region: PRK05246
216591003811	Prokaryotic glutathione synthetase, N-terminal domain; Region: GSH-S_N; pfam02951
216591003812	Prokaryotic glutathione synthetase, ATP-grasp domain; Region: GSH-S_ATP; pfam02955
216591003813	HMMPfam hit to PF02951, Prokaryotic glutathione synthetase, N-termi, score 1.5e-24
216591003814	HMMPfam hit to PF08443, RimK-like ATP-grasp domain, score 5.6e-05
216591003815	HMMPfam hit to PF02955, Prokaryotic glutathione synthetase, ATP-gra, score 7.4e-118
216591003816	PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006
216591003817	active pocket/dimerization site; other site
216591003818	active site
216591003819	phosphorylation site [posttranslational modification]
216591003820	HMMPfam hit to PF03610, PTS system fructose IIA component, score 4.7e-12
216591003821	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
216591003822	dimerization domain swap beta strand [polypeptide binding]; other site
216591003823	regulatory protein interface [polypeptide binding]; other site
216591003824	active site
216591003825	regulatory phosphorylation site [posttranslational modification]; other site
216591003826	HMMPfam hit to PF00381, PTS HPr component phosphorylation site, score 1.7e-47
216591003827	PS00369 PTS HPR component histidine phosphorylation site signature.
216591003828	PS00589 PTS HPR component serine phosphorylation site signature.
216591003829	Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080
216591003830	PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524
216591003831	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
216591003832	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
216591003833	HMMPfam hit to PF05524, PEP-utilising enzyme, N-terminal, score 2.7e-45
216591003834	HMMPfam hit to PF00391, PEP-utilising enzyme, mobile domain, score 1.1e-28
216591003835	PS00370 PEP-utilizing enzymes phosphorylation site signature.
216591003836	HMMPfam hit to PF02896, PEP-utilising enzyme, TIM barrel doma, score 2e-149
216591003837	PS00742 PEP-utilizing enzymes signature 2.
216591003838	molybdopterin biosynthesis protein MoeB; Provisional; Region: PRK05690
216591003839	ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD...; Region: ThiF_MoeB_HesA_family; cd00757
216591003840	ATP binding site [chemical binding]; other site
216591003841	substrate interface [chemical binding]; other site
216591003842	HMMPfam hit to PF05237, MoeZ/MoeB domain, score 8.8e-35
216591003843	HMMPfam hit to PF00899, ThiF family, score 5.6e-64
216591003844	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
216591003845	C-terminal peptidase (prc); Region: prc; TIGR00225
216591003846	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
216591003847	protein binding site [polypeptide binding]; other site
216591003848	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
216591003849	Catalytic dyad [active]
216591003850	HMMPfam hit to PF03572, Peptidase family S41, score 1.3e-78
216591003851	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 2.7e-15
216591003852	1 probable transmembrane helix predicted for BCAL0738 by TMHMM2.0 at aa 7-29
216591003853	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
216591003854	catalytic core [active]
216591003855	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
216591003856	HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 3.4e-43
216591003857	PS00175 Phosphoglycerate mutase family phosphohistidine signature.
216591003858	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
216591003859	active site residue [active]
216591003860	1 probable transmembrane helix predicted for BCAL0740 by TMHMM2.0 at aa 7-29
216591003861	HMMPfam hit to PF00581, Rhodanese-like domain, score 8.9e-13
216591003862	Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the...; Region: GRX_GRXb_1_3_like; cd03418
216591003863	GSH binding site [chemical binding]; other site
216591003864	catalytic residues [active]
216591003865	HMMPfam hit to PF00462, Glutaredoxin, score 2.2e-23
216591003866	preprotein translocase subunit SecB; Validated; Region: PRK05751
216591003867	SecA binding site; other site
216591003868	Preprotein binding site; other site
216591003869	HMMPfam hit to PF02556, Preprotein translocase subunit SecB, score 1.3e-37
216591003870	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094
216591003871	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
216591003872	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479
216591003873	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 1.6e-43
216591003874	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003875	HMMPfam hit to PF07479, NAD-dependent glycerol-3-phosphate deh, score 7.6e-63
216591003876	PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature.
216591003877	Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly...; Region: Macro_Appr_pase_like; cd02908
216591003878	putative ADP-ribose binding site [chemical binding]; other site
216591003879	putative active site [active]
216591003880	HMMPfam hit to PF01661, Appr-1-p processing enzyme family, score 7.4e-62
216591003881	Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]; Region: CspR; COG0219
216591003882	HMMPfam hit to PF00588, SpoU rRNA Methylase family, score 1.8e-39
216591003883	Predicted amidophosphoribosyltransferases [General function prediction only]; Region: ComFC; COG1040
216591003884	PS00217 Sugar transport proteins signature 2.
216591003885	biotin biosynthesis protein BioC; Region: BioC; TIGR02072
216591003886	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591003887	S-adenosylmethionine binding site [chemical binding]; other site
216591003888	PS00136 Serine proteases, subtilase family, aspartic acid active site.
216591003889	HMMPfam hit to PF08241, Methyltransferase domain, score 1.2e-22
216591003890	HMMPfam hit to PF08242, Methyltransferase domain, score 6.4e-14
216591003891	Integral membrane protein (DUF2244); Region: DUF2244; pfam10003
216591003892	2 probable transmembrane helices predicted for BCAL0748 by TMHMM2.0 at aa 33-52 and 56-78
216591003893	Cytochrome C oxidase subunit II, transmembrane domain; Region: COX2_TM; pfam02790
216591003894	cytochrome c oxidase subunit II; Provisional; Region: COX2; MTH00140
216591003895	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; pfam00116
216591003896	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591003897	Cytochrome C oxidase, cbb3-type, subunit III; Region: Cytochrome_CBB3; pfam13442
216591003898	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591003899	ligand binding site [chemical binding]; other site
216591003900	3 probable transmembrane helices predicted for BCAL0749 by TMHMM2.0 at aa 7-26, 56-78 and 99-121
216591003901	HMMPfam hit to PF02790, Cytochrome C oxidase subunit II, transmem, score 7.1e-13
216591003902	HMMPfam hit to PF00116, Cytochrome C oxidase subunit II, periplas, score 8.5e-36
216591003903	PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.
216591003904	HMMPfam hit to PF00034, Cytochrome c, score 0.00012
216591003905	PS00190 Cytochrome c family heme-binding site signature.
216591003906	HMMPfam hit to PF00691, OmpA family, score 4.4e-11
216591003907	Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843
216591003908	Cytochrome C oxidase subunit I.  Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of...; Region: Cyt_c_Oxidase_I; cd01663
216591003909	Subunit I/III interface [polypeptide binding]; other site
216591003910	D-pathway; other site
216591003911	Subunit I/VIIc interface [polypeptide binding]; other site
216591003912	Subunit I/IV interface [polypeptide binding]; other site
216591003913	Subunit I/II interface [polypeptide binding]; other site
216591003914	Low-spin heme (heme a) binding site [chemical binding]; other site
216591003915	Subunit I/VIIa interface [polypeptide binding]; other site
216591003916	Subunit I/VIa interface [polypeptide binding]; other site
216591003917	Dimer interface; other site
216591003918	Putative water exit pathway; other site
216591003919	Binuclear center (heme a3/CuB) [ion binding]; other site
216591003920	K-pathway; other site
216591003921	Subunit I/Vb interface [polypeptide binding]; other site
216591003922	Putative proton exit pathway; other site
216591003923	Subunit I/VIb interface; other site
216591003924	Subunit I/VIc interface [polypeptide binding]; other site
216591003925	Electron transfer pathway; other site
216591003926	Subunit I/VIIIb interface [polypeptide binding]; other site
216591003927	Subunit I/VIIb interface [polypeptide binding]; other site
216591003928	HMMPfam hit to PF00115, Cytochrome C and Quinol oxidase polypeptide, score 1.4e-254
216591003929	12 probable transmembrane helices predicted for BCAL0750 by TMHMM2.0 at aa 37-59, 79-101, 121-143, 166-188, 208-230, 255-277, 284-306, 321-343, 356-378, 393-415, 428-450 and 470-492
216591003930	PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.
216591003931	1 probable transmembrane helix predicted for BCAL0751 by TMHMM2.0 at aa 21-43
216591003932	cytochrome C oxidase assembly protein; Provisional; Region: PRK05089
216591003933	1 probable transmembrane helix predicted for BCAL0752 by TMHMM2.0 at aa 21-43
216591003934	HMMPfam hit to PF04442, Cytochrome c oxidase assembly protein Cta, score 1.1e-45
216591003935	Protein of unknown function (DUF2970); Region: DUF2970; pfam11174
216591003936	1 probable transmembrane helix predicted for BCAL0753 by TMHMM2.0 at aa 43-65
216591003937	Cytochrome c oxidase subunit III.  Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of...; Region: Cyt_c_Oxidase_III; cd01665
216591003938	Subunit III/VIIa interface [polypeptide binding]; other site
216591003939	Phospholipid binding site [chemical binding]; other site
216591003940	Subunit I/III interface [polypeptide binding]; other site
216591003941	Subunit III/VIb interface [polypeptide binding]; other site
216591003942	Subunit III/VIa interface; other site
216591003943	Subunit III/Vb interface [polypeptide binding]; other site
216591003944	HMMPfam hit to PF00510, Cytochrome c oxidase subunit III, score 1.4e-57
216591003945	6 probable transmembrane helices predicted for BCAL0754 by TMHMM2.0 at aa 20-37, 42-64, 84-106, 181-203, 223-245 and 265-284
216591003946	Protein of unknown function (DUF2909); Region: DUF2909; pfam11137
216591003947	2 probable transmembrane helices predicted for BCAL0755 by TMHMM2.0 at aa 5-24 and 37-59
216591003948	SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring...; Region: SURF1; cd06662
216591003949	3 probable transmembrane helices predicted for BCAL0756 by TMHMM2.0 at aa 5-24, 89-111 and 207-226
216591003950	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
216591003951	1 probable transmembrane helix predicted for BCAL0757 by TMHMM2.0 at aa 23-45
216591003952	Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]; Region: CtaA; COG1612
216591003953	Cytochrome oxidase assembly protein; Region: COX15-CtaA; pfam02628
216591003954	10 probable transmembrane helices predicted for BCAL0758 by TMHMM2.0 at aa 2-24, 34-51, 64-86, 101-123, 136-158, 162-184, 205-227, 270-292, 304-326 and 331-353
216591003955	HMMPfam hit to PF02628, Cytochrome oxidase assembly protein, score 2.3e-08
216591003956	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003957	protoheme IX farnesyltransferase; Provisional; Region: PRK04375
216591003958	UbiA prenyltransferase family; Region: UbiA; pfam01040
216591003959	HMMPfam hit to PF01040, UbiA prenyltransferase family, score 5.8e-72
216591003960	9 probable transmembrane helices predicted for BCAL0759 by TMHMM2.0 at aa 27-44, 48-70, 91-113, 118-138, 145-167, 171-193, 214-236, 240-259 and 272-294
216591003961	PS00943 UbiA prenyltransferase family signature.
216591003962	SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c...; Region: SCO; cd02968
216591003963	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591003964	Cu(I) binding site [ion binding]; other site
216591003965	HMMPfam hit to PF02630, SCO1/SenC, score 2.9e-35
216591003966	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591003967	YCII-related domain; Region: YCII; cl00999
216591003968	HMMPfam hit to PF03795, YCII-related domain, score 3.2e-15
216591003969	Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins; Region: Cache_2; smart01049
216591003970	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cl01054
216591003971	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591003972	dimer interface [polypeptide binding]; other site
216591003973	putative CheW interface [polypeptide binding]; other site
216591003974	2 probable transmembrane helices predicted for BCAL0762 by TMHMM2.0 at aa 10-30 and 187-209
216591003975	HMMPfam hit to PF08269, Cache domain, score 4.2e-36
216591003976	HMMPfam hit to PF00672, HAMP domain, score 0.0075
216591003977	PS00538 Bacterial chemotaxis sensory transducers signature.
216591003978	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 5.5e-106
216591003979	ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]; Region: NlpA; COG1464
216591003980	NLPA lipoprotein; Region: Lipoprotein_9; pfam03180
216591003981	HMMPfam hit to PF03180, NLPA lipoprotein, score 6.6e-133
216591003982	Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_uncharacterized_transporter; cd06325
216591003983	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591003984	zinc binding site [ion binding]; other site
216591003985	putative ligand binding site [chemical binding]; other site
216591003986	1 probable transmembrane helix predicted for BCAL0765 by TMHMM2.0 at aa 7-29
216591003987	HMMPfam hit to PF04392, ABC transporter substrate binding protei, score 1.1e-127
216591003988	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591003989	Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of...; Region: TM_PBP1_branched-chain-AA_like; cd06574
216591003990	TM-ABC transporter signature motif; other site
216591003991	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.1e-26
216591003992	8 probable transmembrane helices predicted for BCAL0766 by TMHMM2.0 at aa 7-29, 59-81, 88-107, 131-153, 179-201, 211-230, 235-254 and 269-286
216591003993	ABC-type uncharacterized transport system, ATPase component [General function prediction only]; Region: PhnK; COG1101
216591003994	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591003995	Walker A/P-loop; other site
216591003996	ATP binding site [chemical binding]; other site
216591003997	Q-loop/lid; other site
216591003998	ABC transporter signature motif; other site
216591003999	Walker B; other site
216591004000	D-loop; other site
216591004001	H-loop/switch region; other site
216591004002	HMMPfam hit to PF00005, ABC transporter, score 8.3e-42
216591004003	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004004	PS00211 ABC transporters family signature.
216591004005	DNA Polymerase Y-family; Region: PolY_like; cd03468
216591004006	active site
216591004007	DNA binding site [nucleotide binding]
216591004008	error-prone DNA polymerase; Validated; Region: dnaE2; PRK05672
216591004009	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at DnaE2 gene; Region: PHP_PolIIIA_DnaE2; cd07434
216591004010	putative active site [active]
216591004011	putative PHP Thumb interface [polypeptide binding]; other site
216591004012	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
216591004013	generic binding surface II; other site
216591004014	generic binding surface I; other site
216591004015	HMMPfam hit to PF02811, PHP domain, score 2.3e-08
216591004016	HMMPfam hit to PF07733, Bacterial DNA polymerase III alpha sub, score 2.7e-218
216591004017	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 1.1e-05
216591004018	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591004019	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591004020	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
216591004021	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3.7e-36
216591004022	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591004023	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_2; cd03138
216591004024	conserved cys residue [active]
216591004025	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591004026	HMMPfam hit to PF01965, DJ-1/PfpI family, score 0.002
216591004027	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 0.00041
216591004028	Predicted helix-turn-helix motif with score 1206.000, SD 3.29 at aa 247-268, sequence HTIASLAGISCLTERTFIRRFQ
216591004029	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004030	PS00041 Bacterial regulatory proteins, araC family signature.
216591004031	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 7.2e-07
216591004032	Short chain fatty acids transporter [Lipid metabolism]; Region: AtoE; COG2031
216591004033	HMMPfam hit to PF02667, Short chain fatty acid transporter, score 1.3e-51
216591004034	9 probable transmembrane helices predicted for BCAL0773 by TMHMM2.0 at aa 47-69, 79-101, 122-144, 212-234, 268-287, 297-319, 331-353, 373-395 and 456-478
216591004035	ornithine cyclodeaminase; Validated; Region: PRK06141
216591004036	ornithine cyclodeaminase; Validated; Region: PRK06823; cl17400
216591004037	HMMPfam hit to PF02423, Ornithine cyclodeaminase/mu-crystalli, score 6.3e-58
216591004038	Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243
216591004039	The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members...; Region: MopB_Acetylene-hydratase; cd02759
216591004040	putative [Fe4-S4] binding site [ion binding]; other site
216591004041	putative molybdopterin cofactor binding site [chemical binding]; other site
216591004042	The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This...; Region: MopB_CT_Acetylene-hydratase; cd02781
216591004043	putative molybdopterin cofactor binding site; other site
216591004044	FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The...; Region: flavohem_like_fad_nad_binding; cd06184
216591004045	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
216591004046	FAD binding pocket [chemical binding]; other site
216591004047	FAD binding motif [chemical binding]; other site
216591004048	phosphate binding motif [ion binding]; other site
216591004049	beta-alpha-beta structure motif; other site
216591004050	NAD binding pocket [chemical binding]; other site
216591004051	Heme binding  pocket [chemical binding]; other site
216591004052	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591004053	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
216591004054	catalytic loop [active]
216591004055	iron binding site [ion binding]; other site
216591004056	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding do, score 5.1e-15
216591004057	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 3.7e-15
216591004058	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 1.9e-07
216591004059	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 1.1e-24
216591004060	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 5.2e-32
216591004061	HMMPfam hit to PF04879, Molybdopterin oxidoreductase Fe4S4 do, score 1.9e-05
216591004062	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591004063	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591004064	The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_PAO1_like; cd08412
216591004065	putative substrate binding pocket [chemical binding]; other site
216591004066	dimerization interface [polypeptide binding]; other site
216591004067	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-19
216591004068	Predicted helix-turn-helix motif with score 1010.000, SD 2.63 at aa 20-41, sequence GQISKSANLCSVSQSSMTIALK
216591004069	PS00044 Bacterial regulatory proteins, lysR family signature.
216591004070	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.5e-39
216591004071	Transcriptional regulators [Transcription]; Region: PhnF; COG2188
216591004072	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591004073	DNA-binding site [nucleotide binding]; DNA binding site
216591004074	The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain; Region: UTRA; smart00866
216591004075	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 2e-15
216591004076	PS00043 Bacterial regulatory proteins, gntR family signature.
216591004077	HMMPfam hit to PF07702, UTRA domain, score 1.9e-41
216591004078	N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Region: NagA; COG1820
216591004079	N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to...; Region: NagA; cd00854
216591004080	active site
216591004081	dimer interface [polypeptide binding]; other site
216591004082	HMMPfam hit to PF01979, Amidohydrolase family, score 8.4e-14
216591004083	Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]; Region: AgaS; COG2222
216591004084	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
216591004085	dimer interface [polypeptide binding]; other site
216591004086	active site
216591004087	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
216591004088	dimer interface [polypeptide binding]; other site
216591004089	active site
216591004090	HMMPfam hit to PF01380, SIS domain, score 3.3e-10
216591004091	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004092	HMMPfam hit to PF01380, SIS domain, score 2.7e-14
216591004093	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591004094	Phosphotransferase system IIA components [Carbohydrate transport and metabolism]; Region: NagE; COG2190
216591004095	HPr interaction site; other site
216591004096	glycerol kinase (GK) interaction site [polypeptide binding]; other site
216591004097	active site
216591004098	phosphorylation site [posttranslational modification]
216591004099	Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080
216591004100	PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524
216591004101	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
216591004102	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
216591004103	HMMPfam hit to PF00358, phosphoenolpyruvate-dependent sugar p, score 5.2e-54
216591004104	PS00371 PTS EIIA domains phosphorylation site signature 1.
216591004105	HMMPfam hit to PF00381, PTS HPr component phosphorylation sit, score 1e-12
216591004106	PS00369 PTS HPR component histidine phosphorylation site signature.
216591004107	HMMPfam hit to PF05524, PEP-utilising enzyme, N-terminal, score 5e-30
216591004108	HMMPfam hit to PF00391, PEP-utilising enzyme, mobile domain, score 3e-24
216591004109	PS00370 PEP-utilizing enzymes phosphorylation site signature.
216591004110	HMMPfam hit to PF02896, PEP-utilising enzyme, TIM barrel doma, score 3.7e-118
216591004111	PS00742 PEP-utilizing enzymes signature 2.
216591004112	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
216591004113	PTS system, N-acetylglucosamine-specific IIBC component; Region: PTS-II-BC-nag; TIGR01998
216591004114	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
216591004115	active site turn [active]
216591004116	phosphorylation site [posttranslational modification]
216591004117	12 probable transmembrane helices predicted for BCAL0781 by TMHMM2.0 at aa 12-34, 49-66, 71-88, 98-115, 135-154, 164-186, 193-215, 230-252, 261-283, 287-309, 311-333 and 337-359
216591004118	HMMPfam hit to PF02378, Phosphotransferase system, EIIC, score 1.3e-101
216591004119	HMMPfam hit to PF00367, phosphotransferase system, EIIB, score 2.4e-11
216591004120	PS01035 PTS EIIB domains cysteine phosphorylation site signature.
216591004121	HMMPfam hit to PF00367, phosphotransferase system, EIIB, score 5.8e-05
216591004122	Putative carbohydrate binding domain; Region: CHB_HEX; cl03918
216591004123	Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides; Region: GH20_hexosaminidase; cl02948
216591004124	Glycosyl hydrolase family 20, catalytic domain; Region: Glyco_hydro_20; pfam00728
216591004125	active site
216591004126	HMMPfam hit to PF00728, Glycosyl hydrolase family 20, catalyti, score 3.4e-159
216591004127	HMMPfam hit to PF03173, Putative carbohydrate binding domain, score 9.4e-18
216591004128	1 probable transmembrane helix predicted for BCAL0782 by TMHMM2.0 at aa 7-29
216591004129	Membrane bound YbgT-like protein; Region: YbgT_YccB; pfam08173
216591004130	HMMPfam hit to PF08173, Membrane bound YbgT-like protein, score 1.3e-14
216591004131	1 probable transmembrane helix predicted for BCAL0783 by TMHMM2.0 at aa 2-24
216591004132	cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219
216591004133	Cytochrome oxidase subunit II; Region: Cyto_ox_2; pfam02322
216591004134	HMMPfam hit to PF02322, Cytochrome oxidase subunit II, score 2.1e-169
216591004135	8 probable transmembrane helices predicted for BCAL0784 by TMHMM2.0 at aa 7-24, 77-99, 120-142, 162-184, 205-227, 262-284, 291-313 and 336-358
216591004136	cytochrome d terminal oxidase subunit 1; Provisional; Region: PRK15097
216591004137	Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; cl00562
216591004138	HMMPfam hit to PF01654, Bacterial Cytochrome Ubiquinol Oxidase, score 1.4e-287
216591004139	9 probable transmembrane helices predicted for BCAL0785 by TMHMM2.0 at aa 15-37, 57-79, 94-116, 129-148, 188-210, 217-239, 390-412, 425-447 and 475-492
216591004140	1 probable transmembrane helix predicted for BCAL0786 by TMHMM2.0 at aa 34-53
216591004141	RNA polymerase factor sigma-32; Reviewed; Region: PRK06596
216591004142	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
216591004143	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591004144	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591004145	DNA binding residues [nucleotide binding]
216591004146	PS00716 Sigma-70 factors family signature 2.
216591004147	Predicted helix-turn-helix motif with score 1683.000, SD 4.92 at aa 276-297, sequence STLHDLAAEFGVSAERIRQIEA
216591004148	HMMPfam hit to PF04542, Sigma-70 region, score 2.6e-23
216591004149	PS00715 Sigma-70 factors family signature 1.
216591004150	Lipid A 3-O-deacylase (PagL); Region: PagL; pfam09411
216591004151	1 probable transmembrane helix predicted for BCAL0788 by TMHMM2.0 at aa 13-32
216591004152	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591004153	Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Region: LeuA; COG0119
216591004154	Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_LeuA; cd07942
216591004155	active site
216591004156	catalytic residues [active]
216591004157	metal binding site [ion binding]; metal-binding site
216591004158	HMMPfam hit to PF00682, HMGL-like, score 1.7e-93
216591004159	PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2.
216591004160	PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1.
216591004161	glycosyl transferase family protein; Provisional; Region: PRK08136
216591004162	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
216591004163	HMMPfam hit to PF02885, Glycosyl transferase family, helical, score 1e-05
216591004164	GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens; Region: GST_N_Zeta; cd03042
216591004165	maleylacetoacetate isomerase; Region: maiA; TIGR01262
216591004166	C-terminal domain interface [polypeptide binding]; other site
216591004167	GSH binding site (G-site) [chemical binding]; other site
216591004168	putative dimer interface [polypeptide binding]; other site
216591004169	C-terminal, alpha helical domain of Class Zeta Glutathione S-transferases; Region: GST_C_Zeta; cd03191
216591004170	dimer interface [polypeptide binding]; other site
216591004171	N-terminal domain interface [polypeptide binding]; other site
216591004172	maleylacetoacetate (MAA) substrate binding site (H site) [chemical binding]; other site
216591004173	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 2.9e-10
216591004174	signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416
216591004175	SRP54-type protein, helical bundle domain; Region: SRP54_N; smart00963
216591004176	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
216591004177	P loop; other site
216591004178	GTP binding site [chemical binding]; other site
216591004179	HMMPfam hit to PF00448, SRP54-type protein, GTPase domain, score 2.7e-107
216591004180	PS00300 SRP54-type proteins GTP-binding domain signature.
216591004181	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004182	HMMPfam hit to PF02881, SRP54-type protein, helical bundle domain, score 1.7e-13
216591004183	N6-adenine-specific methylase [DNA replication, recombination, and repair]; Region: COG0742
216591004184	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591004185	S-adenosylmethionine binding site [chemical binding]; other site
216591004186	HMMPfam hit to PF03602, Conserved hypothetical protein, score 6.4e-61
216591004187	PS00092 N-6 Adenine-specific DNA methylases signature.
216591004188	phosphopantetheine adenylyltransferase; Provisional; Region: coaD; PRK00168
216591004189	Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163
216591004190	active site
216591004191	(T/H)XGH motif; other site
216591004192	HMMPfam hit to PF01467, Cytidylyltransferase, score 1.7e-27
216591004193	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
216591004194	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 2.2e-05
216591004195	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591004196	Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Region: HisC; COG0079
216591004197	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591004198	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591004199	homodimer interface [polypeptide binding]; other site
216591004200	catalytic residue [active]
216591004201	HMMPfam hit to PF00155, Aminotransferase class I and II, score 4.8e-79
216591004202	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
216591004203	putative active site [active]
216591004204	catalytic residue [active]
216591004205	HMMPfam hit to PF01195, Peptidyl-tRNA hydrolase, score 6.1e-78
216591004206	PS01196 Peptidyl-tRNA hydrolase signature 2.
216591004207	PS01195 Peptidyl-tRNA hydrolase signature 1.
216591004208	50S ribosomal protein L25/general stress protein Ctc; Reviewed; Region: PRK05618
216591004209	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
216591004210	5S rRNA interface [nucleotide binding]; other site
216591004211	CTC domain interface [polypeptide binding]; other site
216591004212	L16 interface [polypeptide binding]; other site
216591004213	HMMPfam hit to PF01386, Ribosomal L25p family, score 1.3e-22
216591004214	ribose-phosphate pyrophosphokinase; Provisional; Region: PRK01259
216591004215	N-terminal domain of ribose phosphate pyrophosphokinase; Region: Pribosyltran_N; pfam13793
216591004216	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591004217	active site
216591004218	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 4.7e-31
216591004219	PS00103 Purine/pyrimidine phosphoribosyl transferases signature.
216591004220	PS00114 Phosphoribosyl pyrophosphate synthetase signature.
216591004221	HMMPfam hit to PF08544, GHMP kinases C terminal, score 1.1e-05
216591004222	HMMPfam hit to PF00288, GHMP kinases N terminal domain, score 1.6e-21
216591004223	outer membrane lipoprotein LolB; Provisional; Region: lolB; PRK00022
216591004224	Outer membrane lipoprotein LolB; Region: LolB; pfam03550
216591004225	HMMPfam hit to PF03550, Outer membrane lipoprotein LolB, score 6.3e-26
216591004226	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004227	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591004228	TPR motif; other site
216591004229	binding surface
216591004230	FOG: TPR repeat [General function prediction only]; Region: NrfG; COG0457
216591004231	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591004232	binding surface
216591004233	TPR motif; other site
216591004234	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591004235	binding surface
216591004236	TPR motif; other site
216591004237	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.23
216591004238	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.0034
216591004239	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.47
216591004240	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.096
216591004241	formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated; Region: PRK01103
216591004242	N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966
216591004243	DNA binding site [nucleotide binding]
216591004244	catalytic residue [active]
216591004245	H2TH interface [polypeptide binding]; other site
216591004246	putative catalytic residues [active]
216591004247	turnover-facilitating residue; other site
216591004248	intercalation triad [nucleotide binding]; other site
216591004249	8OG recognition residue [nucleotide binding]; other site
216591004250	putative reading head residues; other site
216591004251	Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831
216591004252	Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827
216591004253	HMMPfam hit to PF01149, Formamidopyrimidine-DNA glycosylase N-, score 2.1e-40
216591004254	HMMPfam hit to PF06831, Formamidopyrimidine-DNA glycosylase H2, score 1.4e-31
216591004255	HMMPfam hit to PF06827, Zinc finger found in FPG and IleRS, score 0.00015
216591004256	PS01242 Formamidopyrimidine-DNA glycosylase signature.
216591004257	A/G-specific DNA glycosylase [DNA replication, recombination, and repair]; Region: MutY; COG1194
216591004258	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
216591004259	minor groove reading motif; other site
216591004260	helix-hairpin-helix signature motif; other site
216591004261	substrate binding pocket [chemical binding]; other site
216591004262	active site
216591004263	DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread  A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431
216591004264	DNA binding and oxoG recognition site [nucleotide binding]
216591004265	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 4.2e-20
216591004266	HMMPfam hit to PF00633, Helix-hairpin-helix motif, score 3.4e-07
216591004267	ATP-dependent protease La (LON) domain; Region: LON; pfam02190
216591004268	HMMPfam hit to PF02190, ATP-dependent protease La (LON) domain, score 5.1e-07
216591004269	PS00095 C-5 cytosine-specific DNA methylases C-terminal signature.
216591004270	glmZ(sRNA)-inactivating NTPase; Provisional; Region: PRK05416
216591004271	HMMPfam hit to PF03668, P-loop ATPase protein family, score 3.3e-102
216591004272	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004273	HPr kinase/phosphorylase; Provisional; Region: PRK05428
216591004274	HPr Serine kinase N terminus; Region: Hpr_kinase_N; pfam02603
216591004275	HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent...; Region: HprK_C; cd01918
216591004276	Hpr binding site; other site
216591004277	active site
216591004278	homohexamer subunit interaction site [polypeptide binding]; other site
216591004279	HMMPfam hit to PF07475, HPr Serine kinase C-terminus, score 1e-43
216591004280	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004281	CDS contains a nonsense mutation (amber) after codon 51. Similar to Pseudomonas aeruginosa nitrogen regulatory IIA protein PtsN UniProt:Q9HVV4 (EMBL:AE004860) (154 aa) fasta scores: E()=1.4e-15, 41.722% id in 151 aa. Possible alternative upstream translational start sites
216591004282	HMMPfam hit to PF00359, Phosphoenolpyruvate-dependent sugar phosph, score 3.5e-09
216591004283	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cd00552
216591004284	30S subunit binding site; other site
216591004285	HMMPfam hit to PF02482, Sigma 54 modulation protein / S30EA r, score 9e-40
216591004286	RNA polymerase factor sigma-54; Reviewed; Region: PRK05932
216591004287	Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963
216591004288	Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552
216591004289	HMMPfam hit to PF04552, Sigma-54, DNA binding domain, score 3.9e-103
216591004290	PS00718 Sigma-54 factors family signature 2.
216591004291	Predicted helix-turn-helix motif with score 1921.000, SD 5.73 at aa 390-411, sequence LVLREIADTLGLHESTVSRVTT
216591004292	PS00717 Sigma-54 factors family signature 1.
216591004293	HMMPfam hit to PF04963, Sigma-54 factor, core binding domain, score 5.3e-79
216591004294	HMMPfam hit to PF00309, Sigma-54 factor, Activator interacting do, score 3.1e-18
216591004295	PS00041 Bacterial regulatory proteins, araC family signature.
216591004296	ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137
216591004297	ATP-binding cassette component of YhbG transport system; Region: ABC_YhbG; cd03218
216591004298	Walker A/P-loop; other site
216591004299	ATP binding site [chemical binding]; other site
216591004300	Q-loop/lid; other site
216591004301	ABC transporter signature motif; other site
216591004302	Walker B; other site
216591004303	D-loop; other site
216591004304	H-loop/switch region; other site
216591004305	HMMPfam hit to PF00005, ABC transporter, score 6e-57
216591004306	PS00211 ABC transporters family signature.
216591004307	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004308	lipopolysaccharide transport periplasmic protein LptA; Region: outer_YhbN_LptA; TIGR03002
216591004309	OstA-like protein; Region: OstA; pfam03968
216591004310	HMMPfam hit to PF03968, OstA-like protein, score 2e-49
216591004311	Lipopolysaccharide-assembly, LptC-related; Region: LptC; pfam06835
216591004312	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3117
216591004313	HMMPfam hit to PF06835, Protein of unknown function (DUF1239), score 5e-36
216591004314	1 probable transmembrane helix predicted for BCAL0816 by TMHMM2.0 at aa 5-27
216591004315	Low specificity phosphatase (HAD superfamily) [General function prediction only]; Region: COG1778
216591004316	HAD-superfamily hydrolase, subfamily IIIA; Region: HAD-SF-IIIA; TIGR01662
216591004317	D-arabinose 5-phosphate isomerase; Provisional; Region: PRK10892
216591004318	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
216591004319	putative active site [active]
216591004320	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway...; Region: CBS_pair_KpsF_GutQ_assoc; cd04604
216591004321	HMMPfam hit to PF00571, CBS domain pair, score 1.7e-26
216591004322	HMMPfam hit to PF01380, SIS domain, score 9.2e-36
216591004323	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004324	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; COG0475
216591004325	TrkA-N domain; Region: TrkA_N; pfam02254
216591004326	12 probable transmembrane helices predicted for BCAL0819 by TMHMM2.0 at aa 5-24, 29-46, 56-75, 82-104, 114-136, 149-171, 181-200, 220-254, 269-286, 295-317, 327-349 and 356-378
216591004327	HMMPfam hit to PF00999, Sodium/hydrogen exchanger family, score 2.6e-75
216591004328	HMMPfam hit to PF02254, TrkA-N domain, score 3.2e-31
216591004329	HMMPfam hit to PF02080, TrkA-C domain, score 3.1e-10
216591004330	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591004331	active site
216591004332	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 1.7e-42
216591004333	PS00103 Purine/pyrimidine phosphoribosyl transferases signature.
216591004334	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591004335	HMMPfam hit to PF01810, LysE type translocator, score 8.5e-38
216591004336	5 probable transmembrane helices predicted for BCAL0821 by TMHMM2.0 at aa 37-59, 69-91, 112-134, 149-171 and 183-202
216591004337	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_hydrolase_3; cd03676
216591004338	nudix motif; other site
216591004339	HMMPfam hit to PF00293, NUDIX domain, score 1.3e-05
216591004340	formyltetrahydrofolate deformylase; Reviewed; Region: purU; PRK06027
216591004341	N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); Region: ACT_F4HF-DF; cd04875
216591004342	Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Region: FMT_core_Formyl-FH4-Hydrolase_C; cd08648
216591004343	putative active site [active]
216591004344	putative substrate binding site [chemical binding]; other site
216591004345	putative cosubstrate binding site; other site
216591004346	catalytic site [active]
216591004347	HMMPfam hit to PF01842, ACT domain, score 0.00027
216591004348	HMMPfam hit to PF00551, Formyl transferase, score 4.5e-36
216591004349	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628
216591004350	7 probable transmembrane helices predicted for BCAL0824 by TMHMM2.0 at aa 43-65, 86-108, 172-194, 228-247, 257-274, 279-301 and 328-350
216591004351	excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349
216591004352	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
216591004353	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
216591004354	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
216591004355	HMMPfam hit to PF00005, ABC transporter, score 2.3e-35
216591004356	PS00211 ABC transporters family signature.
216591004357	PS00190 Cytochrome c family heme-binding site signature.
216591004358	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004359	PS00211 ABC transporters family signature.
216591004360	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004361	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591004362	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591004363	putative substrate translocation pore; other site
216591004364	12 probable transmembrane helices predicted for BCAL0826 by TMHMM2.0 at aa 21-43, 53-75, 87-104, 109-131, 143-165, 170-192, 213-235, 250-272, 279-296, 300-319, 340-362 and 366-385
216591004365	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.8e-54
216591004366	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
216591004367	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
216591004368	dimer interface [polypeptide binding]; other site
216591004369	ssDNA binding site [nucleotide binding]; other site
216591004370	tetramer (dimer of dimers) interface [polypeptide binding]; other site
216591004371	HMMPfam hit to PF00436, Single-strand binding protein family, score 3.7e-39
216591004372	PS00735 Single-strand binding protein family signature 1.
216591004373	PS00736 Single-strand binding protein family signature 2.
216591004374	G:T/U mismatch specific DNA glcosylase (MUG); Region: UDG_F2_MUG; cd10028
216591004375	active site
216591004376	SUMO-1 interface [polypeptide binding]; other site
216591004377	HMMPfam hit to PF03167, Uracil DNA glycosylase superfamily, score 2.7e-23
216591004378	Alkyladenine DNA glycosylase catalyzes the first step in base excision repair; Region: AAG; cd00540
216591004379	active site
216591004380	DNA binding site [nucleotide binding]
216591004381	HMMPfam hit to PF02245, Methylpurine-DNA glycosylase (MPG), score 4.4e-56
216591004382	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004383	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
216591004384	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591004385	P-loop; other site
216591004386	Magnesium ion binding site [ion binding]; other site
216591004387	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591004388	Magnesium ion binding site [ion binding]; other site
216591004389	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 9.2e-28
216591004390	Phasin protein; Region: Phasin_2; pfam09361
216591004391	putative acyltransferase; Provisional; Region: PRK05790
216591004392	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591004393	dimer interface [polypeptide binding]; other site
216591004394	active site
216591004395	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 1e-177
216591004396	PS00098 Thiolases acyl-enzyme intermediate signature.
216591004397	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 3.8e-85
216591004398	PS00737 Thiolases signature 2.
216591004399	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004400	PS00099 Thiolases active site.
216591004401	acetoacetyl-CoA reductase; Region: AcAcCoA_reduct; TIGR01829
216591004402	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
216591004403	NAD(P) binding site [chemical binding]; other site
216591004404	homotetramer interface [polypeptide binding]; other site
216591004405	homodimer interface [polypeptide binding]; other site
216591004406	active site
216591004407	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.003
216591004408	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.1e-42
216591004409	PS00061 Short-chain dehydrogenases/reductases family signature.
216591004410	1 probable transmembrane helix predicted for BCAL0834 by TMHMM2.0 at aa 5-27
216591004411	1 probable transmembrane helix predicted for BCAL0835 by TMHMM2.0 at aa 13-32
216591004412	Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ; Region: FabA_like; cd01289
216591004413	putative active site 1 [active]
216591004414	Beta-ketoacyl synthase, N-terminal domain; Region: Ketoacyl-synt_2; pfam13723
216591004415	3-oxoacyl-(acyl carrier protein) synthase I; Reviewed; Region: PRK09185
216591004416	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
216591004417	dimer interface [polypeptide binding]; other site
216591004418	active site
216591004419	HMMPfam hit to PF02801, Beta-ketoacyl synthase, C-terminal do, score 1.4e-50
216591004420	HMMPfam hit to PF00109, Beta-ketoacyl synthase, N-terminal do, score 7.9e-09
216591004421	PS00606 Beta-ketoacyl synthases active site.
216591004422	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004423	Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726
216591004424	Catalytic NodB homology domain of rhizobial NodB-like proteins; Region: CE4_NodB_like_6s_7s; cd10917
216591004425	NodB motif; other site
216591004426	active site
216591004427	catalytic site [active]
216591004428	metal binding site [ion binding]; metal-binding site
216591004429	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 7.2e-35
216591004430	Predicted exporter [General function prediction only]; Region: COG4258
216591004431	12 probable transmembrane helices predicted for BCAL0840 by TMHMM2.0 at aa 21-43, 264-281, 288-310, 314-336, 357-379, 389-408, 438-455, 674-692, 699-721, 725-744, 757-779 and 789-811
216591004432	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004433	HMMPfam hit to PF03176, MMPL family, score 9.3e-05
216591004434	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004435	Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl17548
216591004436	1 probable transmembrane helix predicted for BCAL0841 by TMHMM2.0 at aa 17-39
216591004437	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
216591004438	putative acyl-acceptor binding pocket; other site
216591004439	1 probable transmembrane helix predicted for BCAL0842 by TMHMM2.0 at aa 35-54
216591004440	O-succinylbenzoate-CoA ligase; Region: menE; TIGR01923
216591004441	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591004442	acyl-activating enzyme (AAE) consensus motif; other site
216591004443	AMP binding site [chemical binding]; other site
216591004444	active site
216591004445	CoA binding site [chemical binding]; other site
216591004446	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591004447	PS00012 Phosphopantetheine attachment site.
216591004448	Predicted membrane protein [Function unknown]; Region: COG4648
216591004449	5 probable transmembrane helices predicted for BCAL0844 by TMHMM2.0 at aa 5-27, 32-54, 61-78, 98-120 and 141-163
216591004450	acyl carrier protein; Provisional; Region: PRK09184
216591004451	PS00012 Phosphopantetheine attachment site.
216591004452	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
216591004453	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591004454	NAD(P) binding site [chemical binding]; other site
216591004455	active site
216591004456	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.9e-34
216591004457	This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.   The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_5; cd06153
216591004458	homotrimer interaction site [polypeptide binding]; other site
216591004459	putative active site [active]
216591004460	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 0.00072
216591004461	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
216591004462	DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; Region: DPM_DPG-synthase_like; cd04179
216591004463	Ligand binding site; other site
216591004464	Putative Catalytic site; other site
216591004465	DXD motif; other site
216591004466	HMMPfam hit to PF00535, Glycosyl transferase family, score 7e-20
216591004467	Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]; Region: HtpX; COG0501
216591004468	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004469	HMMPfam hit to PF01435, Peptidase family M48, score 4.8e-30
216591004470	L-lactate permease; Region: Lactate_perm; cl00701
216591004471	glycolate transporter; Provisional; Region: PRK09695
216591004472	11 probable transmembrane helices predicted for BCAL0850 by TMHMM2.0 at aa 13-35, 40-62, 69-91, 128-150, 157-179, 194-213, 320-342, 383-402, 423-442, 447-469 and 543-565
216591004473	HMMPfam hit to PF02652, L-lactate permease, score 1.5e-266
216591004474	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004475	Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]; Region: COG1139
216591004476	Uncharacterized ACR, YkgG family COG1556; Region: DUF162; pfam02589
216591004477	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
216591004478	Domain of unknown function (DUF3390); Region: DUF3390; pfam11870
216591004479	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0053
216591004480	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591004481	Uncharacterized ACR, YkgG family COG1556; Region: DUF162; pfam02589
216591004482	HMMPfam hit to PF02589, Uncharacterized ACR, YkgG family COG1556, score 2.1e-13
216591004483	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
216591004484	Cysteine-rich domain; Region: CCG; pfam02754
216591004485	Cysteine-rich domain; Region: CCG; pfam02754
216591004486	HMMPfam hit to PF02754, Cysteine-rich domain, score 1.2e-14
216591004487	HMMPfam hit to PF02754, Cysteine-rich domain, score 1.9e-10
216591004488	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591004489	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591004490	DNA-binding site [nucleotide binding]; DNA binding site
216591004491	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
216591004492	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 5e-18
216591004493	HMMPfam hit to PF07729, FCD domain, score 2.8e-28
216591004494	Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502
216591004495	Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111
216591004496	putative active site [active]
216591004497	catalytic site [active]
216591004498	Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_2; cd09113
216591004499	putative active site [active]
216591004500	catalytic site [active]
216591004501	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.00024
216591004502	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.00049
216591004503	aldolase II superfamily protein; Provisional; Region: PRK07044
216591004504	intersubunit interface [polypeptide binding]; other site
216591004505	active site
216591004506	Zn2+ binding site [ion binding]; other site
216591004507	HMMPfam hit to PF00596, Class II Aldolase and Adducin N-terminal, score 4.2e-59
216591004508	MltA-interacting protein MipA; Region: MipA; cl01504
216591004509	CHRD domain; Region: CHRD; pfam07452
216591004510	HMMPfam hit to PF07452, CHRD domain, score 1.9e-21
216591004511	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591004512	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 7e-84
216591004513	PS01173 Lipolytic enzymes G-D-X-G family, putative histidine active site.
216591004514	EcsC protein family; Region: EcsC; pfam12787
216591004515	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591004516	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591004517	putative substrate translocation pore; other site
216591004518	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591004519	14 probable transmembrane helices predicted for BCAL0861 by TMHMM2.0 at aa 20-42, 57-79, 88-107, 112-134, 147-169, 179-198, 211-233, 238-257, 277-299, 314-336, 343-365, 369-391, 403-425 and 490-512
216591004520	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.8e-56
216591004521	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004522	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004523	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591004524	Winged helix DNA-binding domain; Region: HTH_27; pfam13463
216591004525	HMMPfam hit to PF01047, MarR family, score 5.5e-15
216591004526	intracellular protease, PfpI family; Region: PfpI; TIGR01382
216591004527	Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Region: GATase1_PfpI_1; cd03169
216591004528	conserved cys residue [active]
216591004529	HMMPfam hit to PF01965, DJ-1/PfpI family, score 2.4e-49
216591004530	Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]; Region: COG3616
216591004531	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase; Region: PLPDE_III_cryptic_DSD; cd06818
216591004532	dimer interface [polypeptide binding]; other site
216591004533	active site
216591004534	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
216591004535	substrate binding site [chemical binding]; other site
216591004536	catalytic residue [active]
216591004537	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
216591004538	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591004539	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
216591004540	putative active site [active]
216591004541	HMMPfam hit to PF01418, Helix-turn-helix domain, rpiR family, score 2e-05
216591004542	HMMPfam hit to PF01380, SIS domain, score 2.5e-22
216591004543	N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3653
216591004544	D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics; Region: D-aminoacylase; cd01297
216591004545	active site
216591004546	putative substrate binding pocket [chemical binding]; other site
216591004547	HMMPfam hit to PF01979, Amidohydrolase family, score 0.0036
216591004548	HMMPfam hit to PF07969, Amidohydrolase family, score 3.7e-32
216591004549	HMMPfam hit to PF07908, D-aminoacylase, C-terminal region, score 5.3e-21
216591004550	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
216591004551	homotrimer interaction site [polypeptide binding]; other site
216591004552	putative active site [active]
216591004553	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 3e-30
216591004554	7-cyano-7-deazaguanine reductase; Provisional; Region: queF; PRK11792
216591004555	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2904
216591004556	Enzyme related to GTP cyclohydrolase I [General function prediction only]; Region: COG0780
216591004557	HMMPfam hit to PF01227, GTP cyclohydrolase I, score 8.8e-11
216591004558	threonine dehydratase; Reviewed; Region: PRK09224
216591004559	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
216591004560	tetramer interface [polypeptide binding]; other site
216591004561	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591004562	catalytic residue [active]
216591004563	First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_1; cd04906
216591004564	putative Ile/Val binding site [chemical binding]; other site
216591004565	Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_2; cd04907
216591004566	putative Ile/Val binding site [chemical binding]; other site
216591004567	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.
216591004568	Protein of unknown function (DUF3683); Region: DUF3683; pfam12447
216591004569	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
216591004570	FAD binding domain; Region: FAD_binding_4; pfam01565
216591004571	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
216591004572	4Fe-4S dicluster domain; Region: Fer4_8; pfam13183
216591004573	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
216591004574	Cysteine-rich domain; Region: CCG; pfam02754
216591004575	Domain of unknown function (DUF3400); Region: DUF3400; pfam11880
216591004576	HMMPfam hit to PF01565, FAD binding domain, score 7.6e-27
216591004577	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004578	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 9.6e-09
216591004579	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591004580	PS00190 Cytochrome c family heme-binding site signature.
216591004581	PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.
216591004582	HMMPfam hit to PF02754, Cysteine-rich domain, score 0.004
216591004583	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]; Region: Hit; COG0537
216591004584	nucleotide binding site/active site [active]
216591004585	HIT family signature motif; other site
216591004586	catalytic residue [active]
216591004587	HMMPfam hit to PF01230, HIT domain, score 7e-19
216591004588	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3536
216591004589	HMMPfam hit to PF06155, Protein of unknown function (DUF971), score 4.6e-49
216591004590	Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226
216591004591	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591004592	S-adenosylmethionine binding site [chemical binding]; other site
216591004593	HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase family, score 1.1e-114
216591004594	PS01183 ubiE/COQ5 methyltransferase family signature 1.
216591004595	HMMPfam hit to PF08241, Methyltransferase domain, score 1.3e-25
216591004596	HMMPfam hit to PF08242, Methyltransferase domain, score 1.1e-13
216591004597	Tim44-like domain; Region: Tim44; pfam04280
216591004598	2 probable transmembrane helices predicted for BCAL0874 by TMHMM2.0 at aa 21-38 and 123-145
216591004599	HMMPfam hit to PF04280, Tim44-like domain, score 3e-05
216591004600	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3165
216591004601	SCP-2 sterol transfer family; Region: SCP2; pfam02036
216591004602	HMMPfam hit to PF06843, Protein of unknown function (DUF1243), score 1e-27
216591004603	putative ubiquinone biosynthesis protein UbiB; Reviewed; Region: ubiB; PRK04750
216591004604	2-polyprenylphenol 6-hydroxylase; Region: UbiB; TIGR01982
216591004605	HMMPfam hit to PF03109, ABC1 family, score 2.3e-46
216591004606	1 probable transmembrane helix predicted for BCAL0876 by TMHMM2.0 at aa 497-519
216591004607	Thiopurine S-methyltransferase (TPMT); Region: TPMT; pfam05724
216591004608	HMMPfam hit to PF05724, Thiopurine S-methyltransferase (TPMT), score 1.4e-38
216591004609	HMMPfam hit to PF08242, Methyltransferase domain, score 7.3e-08
216591004610	Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993
216591004611	Uncharacterized conserved protein [Function unknown]; Region: COG2928
216591004612	2 probable transmembrane helices predicted for BCAL0879 by TMHMM2.0 at aa 9-31 and 51-73
216591004613	HMMPfam hit to PF04367, Protein of unknown function (DUF502), score 2e-57
216591004614	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
216591004615	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
216591004616	dimer interface [polypeptide binding]; other site
216591004617	anticodon binding site; other site
216591004618	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
216591004619	homodimer interface [polypeptide binding]; other site
216591004620	motif 1; other site
216591004621	active site
216591004622	motif 2; other site
216591004623	GAD domain; Region: GAD; pfam02938
216591004624	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
216591004625	motif 3; other site
216591004626	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 4.9e-27
216591004627	HMMPfam hit to PF00152, tRNA synthetases class II (D, K and N), score 1.5e-210
216591004628	HMMPfam hit to PF00587, tRNA synthetase class II core domain (G,, score 0.0048
216591004629	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591004630	HMMPfam hit to PF02938, GAD domain, score 5.9e-39
216591004631	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591004632	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_7; cd04664
216591004633	nudix motif; other site
216591004634	HMMPfam hit to PF00293, NUDIX domain, score 5.2e-16
216591004635	Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins; Region: PLDc_CLS_1; cd09110
216591004636	PLD-like domain; Region: PLDc_2; pfam13091
216591004637	putative active site [active]
216591004638	catalytic site [active]
216591004639	Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins; Region: PLDc_ybhO_like_2; cd09159
216591004640	PLD-like domain; Region: PLDc_2; pfam13091
216591004641	putative active site [active]
216591004642	catalytic site [active]
216591004643	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.00072
216591004644	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.063
216591004645	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591004646	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591004647	Predicted helix-turn-helix motif with score 1038.000, SD 2.72 at aa 27-48, sequence LTIGLLAERMQMSKSGVFAHFG
216591004648	acyl-CoA dehydrogenase; Provisional; Region: PTZ00456
216591004649	Acyl-CoA dehydrogenase N terminal; Region: AcylCoA_DH_N; pfam12418
216591004650	Putative acyl-CoA dehydrogenases similar to fadE5; Region: ACAD_fadE5; cd01153
216591004651	FAD binding site [chemical binding]; other site
216591004652	substrate binding site [chemical binding]; other site
216591004653	catalytic residues [active]
216591004654	Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806
216591004655	PS00216 Sugar transport proteins signature 1.
216591004656	3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Region: FadB; COG1250
216591004657	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
216591004658	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591004659	Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Region: CaiD; COG1024
216591004660	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591004661	substrate binding site [chemical binding]; other site
216591004662	oxyanion hole (OAH) forming residues; other site
216591004663	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, score 1.1e-65
216591004664	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 8.5e-10
216591004665	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 3.6e-09
216591004666	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004667	acetyl-CoA acetyltransferase; Provisional; Region: PRK09052
216591004668	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591004669	dimer interface [polypeptide binding]; other site
216591004670	active site
216591004671	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 1.9e-92
216591004672	PS00098 Thiolases acyl-enzyme intermediate signature.
216591004673	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 1.5e-63
216591004674	PS00737 Thiolases signature 2.
216591004675	PS00099 Thiolases active site.
216591004676	enoyl-CoA hydratase; Provisional; Region: PRK06688
216591004677	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591004678	substrate binding site [chemical binding]; other site
216591004679	oxyanion hole (OAH) forming residues; other site
216591004680	trimer interface [polypeptide binding]; other site
216591004681	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cl15762
216591004682	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 1.8e-45
216591004683	formate dehydrogenase accessory protein; Reviewed; Region: PRK00724
216591004684	HMMPfam hit to PF02634, FdhD/NarQ family, score 4.4e-69
216591004685	Conserved nitrate reductase-associated protein (Nitr_red_assoc); Region: Nitr_red_assoc; pfam09655
216591004686	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
216591004687	HMMPfam hit to PF03061, Thioesterase superfamily, score 9.6e-17
216591004688	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
216591004689	ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]; Region: ATM1; COG5265
216591004690	ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; Region: ABCC_ATM1_transporter; cd03253
216591004691	Walker A/P-loop; other site
216591004692	ATP binding site [chemical binding]; other site
216591004693	Q-loop/lid; other site
216591004694	ABC transporter signature motif; other site
216591004695	Walker B; other site
216591004696	D-loop; other site
216591004697	H-loop/switch region; other site
216591004698	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591004699	6 probable transmembrane helices predicted for BCAL0891 by TMHMM2.0 at aa 36-58, 78-100, 166-188, 193-215, 273-295 and 310-332
216591004700	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 3.5e-34
216591004701	HMMPfam hit to PF00005, ABC transporter, score 1.1e-59
216591004702	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004703	PS00211 ABC transporters family signature.
216591004704	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure...; Region: GCD1; COG1208
216591004705	NTP_transferase_like_1 is a member of the nucleotidyl transferase family; Region: NTP_transferase_like_1; cd06422
216591004706	Substrate binding site; other site
216591004707	metal-binding site
216591004708	HMMPfam hit to PF00483, Nucleotidyl transferase, score 1.5e-12
216591004709	PS00092 N-6 Adenine-specific DNA methylases signature.
216591004710	Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]; Region: COG3178
216591004711	Phosphotransferase enzyme family; Region: APH; pfam01636
216591004712	HMMPfam hit to PF01636, Phosphotransferase enzyme family, score 4.6e-25
216591004713	Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]; Region: Imp; COG1452
216591004714	Organic solvent tolerance protein; Region: OstA_C; pfam04453
216591004715	HMMPfam hit to PF04453, Organic solvent tolerance protein, score 1.6e-121
216591004716	SurA N-terminal domain; Region: SurA_N; pfam09312
216591004717	peptidyl-prolyl cis-trans isomerase SurA; Provisional; Region: PRK10770
216591004718	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
216591004719	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
216591004720	HMMPfam hit to PF00639, PPIC-type PPIASE domain, score 2.7e-17
216591004721	HMMPfam hit to PF00639, PPIC-type PPIASE domain, score 1.6e-30
216591004722	4-hydroxythreonine-4-phosphate dehydrogenase; Validated; Region: pdxA; PRK01909
216591004723	4-hydroxythreonine-4-phosphate dehydrogenase; Validated; Region: pdxA; PRK03743
216591004724	HMMPfam hit to PF04166, Pyridoxal phosphate biosynthetic protein Pdx, score 5.1e-140
216591004725	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed; Region: ksgA; PRK00274
216591004726	Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]; Region: KsgA; COG0030
216591004727	HMMPfam hit to PF00398, Ribosomal RNA adenine dimethylase, score 3.5e-49
216591004728	EamA-like transporter family; Region: EamA; pfam00892
216591004729	10 probable transmembrane helices predicted for BCAL0898 by TMHMM2.0 at aa 13-35, 40-62, 75-97, 107-126, 133-150, 165-187, 200-222, 232-254, 259-281 and 285-307
216591004730	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 3.2e-17
216591004731	PS00063 Aldo/keto reductase family putative active site signature.
216591004732	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 8.7e-11
216591004733	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591004734	Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione; Region: Glyoxalase_I; cd07233
216591004735	dimer interface [polypeptide binding]; other site
216591004736	active site
216591004737	metal binding site [ion binding]; metal-binding site
216591004738	glutathione binding site [chemical binding]; other site
216591004739	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 2.2e-47
216591004740	PS00934 Glyoxalase I signature 1.
216591004741	Protein of unknown function DUF45; Region: DUF45; pfam01863
216591004742	HMMPfam hit to PF01863, Protein of unknown function DUF45, score 8.1e-81
216591004743	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
216591004744	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
216591004745	putative acyl-acceptor binding pocket; other site
216591004746	HMMPfam hit to PF01553, Acyltransferase, score 7.1e-24
216591004747	1 probable transmembrane helix predicted for BCAL0901 by TMHMM2.0 at aa 7-29
216591004748	D,D-heptose 1,7-bisphosphate phosphatase; Validated; Region: PRK08942
216591004749	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591004750	active site
216591004751	motif I; other site
216591004752	motif II; other site
216591004753	glycyl-tRNA synthetase subunit beta; Validated; Region: glyS; PRK01233
216591004754	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
216591004755	HMMPfam hit to PF05746, DALR anticodon binding domain, score 1.9e-08
216591004756	HMMPfam hit to PF02092, Glycyl-tRNA synthetase beta subunit, score 2e-188
216591004757	Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733
216591004758	dimer interface [polypeptide binding]; other site
216591004759	motif 1; other site
216591004760	active site
216591004761	motif 2; other site
216591004762	motif 3; other site
216591004763	HMMPfam hit to PF02091, Glycyl-tRNA synthetase alpha subunit, score 6.4e-220
216591004764	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591004765	TPR repeat; Region: TPR_11; pfam13414
216591004766	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591004767	binding surface
216591004768	TPR motif; other site
216591004769	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591004770	binding surface
216591004771	TPR motif; other site
216591004772	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
216591004773	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.42
216591004774	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.41
216591004775	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 9.1e-05
216591004776	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004777	apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302
216591004778	Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571
216591004779	putative active site [active]
216591004780	catalytic triad [active]
216591004781	putative dimer interface [polypeptide binding]; other site
216591004782	7 probable transmembrane helices predicted for BCAL0906 by TMHMM2.0 at aa 37-59, 71-93, 108-130, 151-173, 188-210, 242-264 and 533-552
216591004783	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, score 1.6e-10
216591004784	Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]; Region: CorC; COG4535
216591004785	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
216591004786	Transporter associated domain; Region: CorC_HlyC; smart01091
216591004787	HMMPfam hit to PF03471, Transporter associated domain, score 3.6e-22
216591004788	HMMPfam hit to PF00571, CBS domain pair, score 7.7e-22
216591004789	GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cd06661
216591004790	putative active site pocket [active]
216591004791	dimerization interface [polypeptide binding]; other site
216591004792	putative catalytic residue [active]
216591004793	HMMPfam hit to PF04752, ChaC-like protein, score 2.6e-40
216591004794	unkown domain/putative metalloprotease fusion protein; Provisional; Region: PRK13963
216591004795	HMMPfam hit to PF02130, Uncharacterized protein family UPF0054, score 2.2e-31
216591004796	Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702
216591004797	PhoH-like protein; Region: PhoH; pfam02562
216591004798	HMMPfam hit to PF02562, PhoH-like protein, score 5.3e-138
216591004799	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004800	(dimethylallyl)adenosine tRNA methylthiotransferase; Provisional; Region: PRK14325
216591004801	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
216591004802	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591004803	FeS/SAM binding site; other site
216591004804	TRAM domain; Region: TRAM; pfam01938
216591004805	HMMPfam hit to PF01938, TRAM domain, score 2.4e-17
216591004806	HMMPfam hit to PF04055, Radical SAM superfamily, score 7.9e-34
216591004807	PS01278 Uncharacterized protein family UPF0004 signature.
216591004808	HMMPfam hit to PF00919, Uncharacterized protein family UPF0004, score 2.9e-44
216591004809	transcriptional regulator; Provisional; Region: PRK10632
216591004810	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591004811	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591004812	putative effector binding pocket; other site
216591004813	dimerization interface [polypeptide binding]; other site
216591004814	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.5e-46
216591004815	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6e-18
216591004816	PS00044 Bacterial regulatory proteins, lysR family signature.
216591004817	Predicted helix-turn-helix motif with score 1213.000, SD 3.32 at aa 17-38, sequence GSLSAAGRKLNLTPAAASARLA
216591004818	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591004819	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591004820	putative substrate translocation pore; other site
216591004821	12 probable transmembrane helices predicted for BCAL0913 by TMHMM2.0 at aa 5-27, 42-61, 73-95, 99-121, 128-150, 160-179, 200-222, 237-256, 263-282, 287-309, 329-351 and 355-374
216591004822	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.8e-50
216591004823	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591004824	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591004825	non-specific DNA binding site [nucleotide binding]; other site
216591004826	salt bridge; other site
216591004827	sequence-specific DNA binding site [nucleotide binding]; other site
216591004828	Cupin domain; Region: Cupin_2; pfam07883
216591004829	HMMPfam hit to PF01381, Helix-turn-helix, score 8.8e-14
216591004830	Predicted helix-turn-helix motif with score 1281.000, SD 3.55 at aa 48-69, sequence LSLDALARLSGVSRAMLAQIES
216591004831	HMMPfam hit to PF07883, Cupin domain, score 8.1e-06
216591004832	3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]; Region: RibB; COG0108
216591004833	3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional; Region: ribB; PRK03353
216591004834	HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone 4-phosphate sy, score 1.7e-107
216591004835	Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637
216591004836	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591004837	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1.6e-18
216591004838	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
216591004839	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
216591004840	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
216591004841	HMMPfam hit to PF02894, Oxidoreductase family, C-terminal alph, score 7.7e-06
216591004842	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Ros, score 3e-24
216591004843	Predicted sugar epimerase [Carbohydrate transport and metabolism]; Region: COG4130
216591004844	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 1.2e-20
216591004845	PS00213 Lipocalin signature.
216591004846	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 0.004
216591004847	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591004848	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591004849	Periplasmic sugar-binding domain of uncharacterized transport systems; Region: PBP1_uncharacterized_sugar_binding; cd06307
216591004850	putative ligand binding site [chemical binding]; other site
216591004851	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591004852	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI family, score 3.1e-05
216591004853	Predicted helix-turn-helix motif with score 1285.000, SD 3.56 at aa 14-35, sequence ARFDEIAALAGVSTTTVDRVLN
216591004854	Fatty acid desaturase [Lipid metabolism]; Region: DesA; COG3239
216591004855	This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase)...; Region: Rhizopine-oxygenase-like; cd03511
216591004856	putative di-iron ligands [ion binding]; other site
216591004857	4 probable transmembrane helices predicted for BCAL0921 by TMHMM2.0 at aa 65-82, 87-104, 222-244 and 249-271
216591004858	HMMPfam hit to PF00487, Fatty acid desaturase, score 3.9e-19
216591004859	Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a...; Region: Rieske_RO_ferredoxin; cd03528
216591004860	[2Fe-2S] cluster binding site [ion binding]; other site
216591004861	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 9.3e-20
216591004862	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox_2; pfam07992
216591004863	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591004864	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 9.4e-48
216591004865	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 1.1e-29
216591004866	Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]; Region: GlpF; COG0580
216591004867	amphipathic channel; other site
216591004868	Asn-Pro-Ala signature motifs; other site
216591004869	6 probable transmembrane helices predicted for BCAL0924 by TMHMM2.0 at aa 5-27, 40-62, 82-104, 134-153, 163-185 and 212-234
216591004870	HMMPfam hit to PF00230, Major intrinsic protein, score 9.3e-26
216591004871	glycerol kinase; Provisional; Region: glpK; PRK00047
216591004872	Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_EcGK_like; cd07786
216591004873	N- and C-terminal domain interface [polypeptide binding]; other site
216591004874	active site
216591004875	MgATP binding site [chemical binding]; other site
216591004876	catalytic site [active]
216591004877	metal binding site [ion binding]; metal-binding site
216591004878	glycerol binding site [chemical binding]; other site
216591004879	homotetramer interface [polypeptide binding]; other site
216591004880	homodimer interface [polypeptide binding]; other site
216591004881	FBP binding site [chemical binding]; other site
216591004882	protein IIAGlc interface [polypeptide binding]; other site
216591004883	HMMPfam hit to PF02782, FGGY family of carbohydrate kinases, C-termi, score 1.7e-88
216591004884	PS00445 FGGY family of carbohydrate kinases signature 2.
216591004885	HMMPfam hit to PF00370, FGGY family of carbohydrate kinases, N-termi, score 1.5e-115
216591004886	PS00933 FGGY family of carbohydrate kinases signature 1.
216591004887	glycerol-3-phosphate dehydrogenase; Reviewed; Region: glpD; PRK12266
216591004888	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 2.6e-64
216591004889	PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1.
216591004890	1 probable transmembrane helix predicted for BCAL0927 by TMHMM2.0 at aa 7-26
216591004891	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004892	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
216591004893	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
216591004894	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
216591004895	HMMPfam hit to PF00455, Bacterial regulatory proteins, deoR family, score 6e-59
216591004896	HMMPfam hit to PF08220, DeoR-like helix-turn-helix domain, score 4.1e-22
216591004897	HMMPfam hit to PF08279, HTH domain, score 0.00056
216591004898	Predicted helix-turn-helix motif with score 1213.000, SD 3.32 at aa 26-47, sequence VTVDDLAAHFAVTPQTIRRDVN
216591004899	PS00894 Bacterial regulatory proteins, deoR family signature.
216591004900	Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; COG0405
216591004901	Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019
216591004902	HMMPfam hit to PF01019, Gamma-glutamyltranspeptidase, score 1.2e-195
216591004903	PS00678 Trp-Asp (WD) repeats signature.
216591004904	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657
216591004905	dinuclear metal binding motif [ion binding]; other site
216591004906	helicase 45; Provisional; Region: PTZ00424
216591004907	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
216591004908	ATP binding site [chemical binding]; other site
216591004909	Mg++ binding site [ion binding]; other site
216591004910	motif III; other site
216591004911	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591004912	nucleotide binding region [chemical binding]; other site
216591004913	ATP-binding site [chemical binding]; other site
216591004914	PS00036 bZIP transcription factors basic domain signature.
216591004915	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 8e-34
216591004916	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 4.5e-71
216591004917	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
216591004918	Predicted helix-turn-helix motif with score 1110.000, SD 2.97 at aa 83-104, sequence TPTRELAAQVEESVRAYSKYLK
216591004919	PS00017 ATP/GTP-binding site motif A (P-loop).
216591004920	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591004921	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591004922	Cytochrome c; Region: Cytochrom_C; pfam00034
216591004923	HMMPfam hit to PF00034, Cytochrome c, score 3e-06
216591004924	PS00190 Cytochrome c family heme-binding site signature.
216591004925	PS00190 Cytochrome c family heme-binding site signature.
216591004926	PS00190 Cytochrome c family heme-binding site signature.
216591004927	1 probable transmembrane helix predicted for BCAL0934 by TMHMM2.0 at aa 5-27
216591004928	Cytochrome c; Region: Cytochrom_C; cl11414
216591004929	Cytochrome c; Region: Cytochrom_C; cl11414
216591004930	PS00190 Cytochrome c family heme-binding site signature.
216591004931	PS00190 Cytochrome c family heme-binding site signature.
216591004932	Copper resistance protein D; Region: CopD; pfam05425
216591004933	9 probable transmembrane helices predicted for BCAL0936 by TMHMM2.0 at aa 21-43, 66-88, 95-112, 116-135, 142-164, 179-201, 222-244, 254-276 and 296-318
216591004934	HMMPfam hit to PF05425, Copper resistance protein D, score 5.6e-07
216591004935	galactonate dehydratase; Provisional; Region: PRK14017
216591004936	D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of...; Region: D-galactonate_dehydratase; cd03325
216591004937	putative active site pocket [active]
216591004938	putative metal binding site [ion binding]; other site
216591004939	HMMPfam hit to PF01188, Mandelate racemase / muconate lactonizing en, score 1.8e-29
216591004940	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591004941	PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.
216591004942	HMMPfam hit to PF02746, Mandelate racemase / muconate lactonizing en, score 9.4e-49
216591004943	PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.
216591004944	Probable gene remnant, CDS lacks appropriate translational start site. Similar to the C-terminal regions of Burkholderia ambifaria AMMD regulatory protein GntR bacterial regulatory protein UniProt:Q3FIX3 (EMBL:AAJL01000001) (252 aa) fasta scores: E()=2.1e-75, 91.597% id in 238 aa, and Rhizobium loti (Mesorhizobium loti) probable transcriptional regulator UniProt:Q98K08 (EMBL:BA000012) (260 aa) fasta scores: E()=2.3e-26, 43.256% id in 215 aa
216591004945	HMMPfam hit to PF07729, FCD domain, score 4.3e-29
216591004946	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3813
216591004947	Protein of unknown function (DUF1272); Region: DUF1272; pfam06906
216591004948	HMMPfam hit to PF06906, Protein of unknown function (DUF1272), score 1.3e-48
216591004949	Uncharacterized conserved protein [Function unknown]; Region: COG3791
216591004950	HMMPfam hit to PF04828, Protein of unknown function (DUF636), score 4.1e-20
216591004951	Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]; Region: MrcB; COG0744
216591004952	Transglycosylase; Region: Transgly; cl17702
216591004953	HMMPfam hit to PF00912, Transglycosylase, score 0.00023
216591004954	1 probable transmembrane helix predicted for BCAL0940 by TMHMM2.0 at aa 21-43
216591004955	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591004956	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591004957	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591004958	putative effector binding pocket; other site
216591004959	dimerization interface [polypeptide binding]; other site
216591004960	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.9e-43
216591004961	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.5e-15
216591004962	PS00044 Bacterial regulatory proteins, lysR family signature.
216591004963	Predicted helix-turn-helix motif with score 1045.000, SD 2.75 at aa 17-38, sequence RSFARAATELNISNSSATRLVM
216591004964	PAAR motif; Region: PAAR_motif; pfam05488
216591004965	Cupin domain; Region: Cupin_2; cl17218
216591004966	HMMPfam hit to PF07883, Cupin domain, score 0.0026
216591004967	Putative intracellular protease/amidase [General function prediction only]; Region: ThiJ; COG0693
216591004968	Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Region: GATase1_PfpI_2; cd03139
216591004969	conserved cys residue [active]
216591004970	HMMPfam hit to PF01965, DJ-1/PfpI family, score 3.2e-24
216591004971	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591004972	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591004973	conserved cys residue [active]
216591004974	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591004975	HMMPfam hit to PF01965, DJ-1/PfpI family, score 2.4e-20
216591004976	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 0.00067
216591004977	PS00041 Bacterial regulatory proteins, araC family signature.
216591004978	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.8e-07
216591004979	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591004980	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591004981	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
216591004982	putative effector binding pocket; other site
216591004983	putative dimerization interface [polypeptide binding]; other site
216591004984	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.8e-15
216591004985	PS00044 Bacterial regulatory proteins, lysR family signature.
216591004986	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-44
216591004987	BcenGI4
216591004988	Plasmid recombination enzyme; Region: Mob_Pre; pfam01076
216591004989	HMMPfam hit to PF01076, Plasmid recombination enzyme, score 9.7e-20
216591004990	Integrase [DNA replication, recombination, and repair]; Region: XerC; COG0582
216591004991	INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinases and phage-related integrases. Some have N-terminal domains, which show little sequence...; Region: INT_SG2_C; cd01184
216591004992	Int/Topo IB signature motif; other site
216591004993	HMMPfam hit to PF00589, Phage integrase family, score 0.00076
216591004994	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591004995	putative substrate translocation pore; other site
216591004996	HMMPfam hit to PF00083, Sugar (and other) transporter, score 9.1e-12
216591004997	12 probable transmembrane helices predicted for BCAL0950 by TMHMM2.0 at aa 21-43, 58-80, 93-110, 114-136, 157-179, 194-213, 248-270, 285-307, 314-331, 455-477, 490-512 and 522-540
216591004998	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.1e-15
216591004999	PS00217 Sugar transport proteins signature 2.
216591005000	Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521
216591005001	HAMP domain; Region: HAMP; pfam00672
216591005002	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591005003	dimer interface [polypeptide binding]; other site
216591005004	phosphorylation site [posttranslational modification]
216591005005	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591005006	ATP binding site [chemical binding]; other site
216591005007	Mg2+ binding site [ion binding]; other site
216591005008	G-X-G motif; other site
216591005009	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 6.7e-36
216591005010	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.1e-17
216591005011	HMMPfam hit to PF00672, HAMP domain, score 1.3e-10
216591005012	2 probable transmembrane helices predicted for BCAL0951 by TMHMM2.0 at aa 51-73 and 204-226
216591005013	HMMPfam hit to PF08521, Two-component sensor kinase N-terminal, score 1.7e-57
216591005014	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591005015	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591005016	active site
216591005017	phosphorylation site [posttranslational modification]
216591005018	intermolecular recognition site; other site
216591005019	dimerization interface [polypeptide binding]; other site
216591005020	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591005021	DNA binding site [nucleotide binding]
216591005022	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 4.8e-21
216591005023	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.4e-38
216591005024	recombinase A; Provisional; Region: recA; PRK09354
216591005025	RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983
216591005026	hexamer interface [polypeptide binding]; other site
216591005027	Walker A motif; other site
216591005028	ATP binding site [chemical binding]; other site
216591005029	Walker B motif; other site
216591005030	HMMPfam hit to PF00154, recA bacterial DNA recombination protein, score 3.2e-246
216591005031	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005032	PS00321 recA signature.
216591005033	recombination regulator RecX; Provisional; Region: recX; PRK14136
216591005034	HMMPfam hit to PF02631, RecX family, score 0.0015
216591005035	Protein of unknown function (DUF2889); Region: DUF2889; pfam11136
216591005036	succinyl-CoA synthetase subunit beta; Provisional; Region: sucC; PRK00696
216591005037	ATP-grasp domain; Region: ATP-grasp_2; pfam08442
216591005038	CoA-ligase; Region: Ligase_CoA; pfam00549
216591005039	HMMPfam hit to PF08442, ATP-grasp domain, score 1.6e-116
216591005040	PS00063 Aldo/keto reductase family putative active site signature.
216591005041	HMMPfam hit to PF00549, CoA-ligase, score 5.8e-70
216591005042	PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3.
216591005043	succinyl-CoA synthetase subunit alpha; Validated; Region: PRK05678
216591005044	CoA binding domain; Region: CoA_binding; smart00881
216591005045	CoA-ligase; Region: Ligase_CoA; pfam00549
216591005046	HMMPfam hit to PF02629, CoA binding domain, score 7.2e-38
216591005047	HMMPfam hit to PF00549, CoA-ligase, score 1.6e-41
216591005048	PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1.
216591005049	PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site.
216591005050	integral membrane protein, YjbE family; Region: R_switched_YjbE; TIGR03717
216591005051	5 probable transmembrane helices predicted for BCAL0958 by TMHMM2.0 at aa 11-33, 46-68, 141-163, 168-190 and 205-224
216591005052	HMMPfam hit to PF03741, Integral membrane protein TerC family, score 6.4e-10
216591005053	Type IV pilin N-term methylation site GFxxxE; Region: N_methyl_2; pfam13544
216591005054	Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilA; COG4969
216591005055	Pilin (bacterial filament); Region: Pilin; pfam00114
216591005056	HMMPfam hit to PF07963, Prokaryotic N-terminal methylation motif, score 1.8e-06
216591005057	1 probable transmembrane helix predicted for BCAL0959 by TMHMM2.0 at aa 32-54
216591005058	O-Antigen ligase; Region: Wzy_C; pfam04932
216591005059	Domain of unknown function (DUF3366); Region: DUF3366; pfam11846
216591005060	12 probable transmembrane helices predicted for BCAL0960 by TMHMM2.0 at aa 13-35, 50-68, 75-97, 107-126, 133-155, 184-203, 210-229, 233-250, 262-284, 362-379, 391-413 and 433-455
216591005061	HMMPfam hit to PF04932, O-Antigen Polymerase, score 7.9e-14
216591005062	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005063	MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine...; Region: MoaC_PE; cd01420
216591005064	trimer interface [polypeptide binding]; other site
216591005065	dimer interface [polypeptide binding]; other site
216591005066	putative active site [active]
216591005067	HMMPfam hit to PF01967, MoaC family, score 1.6e-75
216591005068	Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; Region: COG4783
216591005069	Peptidase family M48; Region: Peptidase_M48; pfam01435
216591005070	HMMPfam hit to PF01435, Peptidase family M48, score 2.6e-32
216591005071	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591005072	Protein of unknown function (DUF2946); Region: DUF2944; pfam11161
216591005073	Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]; Region: COG0429
216591005074	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 7.6e-05
216591005075	SnoaL-like domain; Region: SnoaL_3; pfam13474
216591005076	Calcium/calmodulin dependent protein kinase II Association; Region: CaMKII_AD; cl17504
216591005077	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
216591005078	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
216591005079	putative active site [active]
216591005080	HMMPfam hit to PF01075, Glycosyltransferase family, score 1.7e-89
216591005081	Zinc-finger domain; Region: zf-CHCC; cl01821
216591005082	Duplicated region
216591005083	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591005084	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591005085	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591005086	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591005087	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 2.5e-05
216591005088	PS00041 Bacterial regulatory proteins, araC family signature.
216591005089	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 1.9e-08
216591005090	Predicted helix-turn-helix motif with score 1320.000, SD 3.68 at aa 218-239, sequence VTLDEVAQAAGLSPFHAARLFT
216591005091	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 1.8e-26
216591005092	Uncharacterized protein conserved in bacteria [Function unknown]; Region: CreA; COG3045
216591005093	CreA protein; Region: CreA; pfam05981
216591005094	HMMPfam hit to PF05981, CreA protein, score 2e-78
216591005095	Ferredoxin [Energy production and conversion]; Region: COG1146
216591005096	4Fe-4S binding domain; Region: Fer4; cl02805
216591005097	Domain of unknown function (DUF3470); Region: DUF3470; pfam11953
216591005098	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 1.1e-06
216591005099	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591005100	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0067
216591005101	nicotinate phosphoribosyltransferase; Region: NAPRTase; TIGR01514
216591005102	Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting; Region: PncB_like; cd01401
216591005103	active site
216591005104	HMMPfam hit to PF04095, Nicotinate phosphoribosyltransferase (NAPRTa, score 1.1e-106
216591005105	Uncharacterized conserved protein [Function unknown]; Region: COG1556
216591005106	HMMPfam hit to PF02589, Uncharacterized ACR, YkgG family COG1556, score 1.5e-08
216591005107	Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]; Region: ArsB; COG1055
216591005108	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl17221
216591005109	12 probable transmembrane helices predicted for BCAL0974 by TMHMM2.0 at aa 4-26, 33-55, 70-92, 99-116, 131-153, 166-188, 203-225, 258-280, 329-351, 372-394, 409-431 and 451-473
216591005110	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
216591005111	D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); Region: GDH; cd05301
216591005112	dimerization interface [polypeptide binding]; other site
216591005113	ligand binding site [chemical binding]; other site
216591005114	NADP binding site [chemical binding]; other site
216591005115	catalytic site [active]
216591005116	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 1.7e-31
216591005117	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 2.1e-88
216591005118	PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
216591005119	RmuC family; Region: RmuC; pfam02646
216591005120	HMMPfam hit to PF02646, RmuC family, score 7.9e-125
216591005121	putative acetyltransferase; Provisional; Region: PRK03624
216591005122	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591005123	Coenzyme A binding pocket [chemical binding]; other site
216591005124	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.7e-23
216591005125	2 probable transmembrane helices predicted for BCAL0978 by TMHMM2.0 at aa 16-38 and 48-70
216591005126	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005127	molybdopterin biosynthesis protein MoeA; Provisional; Region: PRK10680
216591005128	MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887
216591005129	dimer interface [polypeptide binding]; other site
216591005130	putative functional site; other site
216591005131	putative MPT binding site; other site
216591005132	HMMPfam hit to PF03454, MoeA C-terminal region (domain IV), score 2e-16
216591005133	HMMPfam hit to PF00994, Probable molybdopterin binding domain, score 3.8e-42
216591005134	HMMPfam hit to PF03453, MoeA N-terminal region (domain I and II, score 9.6e-60
216591005135	molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed; Region: mobA; PRK00317
216591005136	MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503
216591005137	GTP binding site; other site
216591005138	molybdenum cofactor biosynthesis protein A; Reviewed; Region: moaA; PRK00164
216591005139	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591005140	FeS/SAM binding site; other site
216591005141	Molybdenum Cofactor Synthesis C; Region: Mob_synth_C; pfam06463
216591005142	HMMPfam hit to PF06463, Molybdenum Cofactor Synthesis C, score 2.4e-43
216591005143	HMMPfam hit to PF04055, Radical SAM superfamily, score 3.1e-38
216591005144	PS01305 moaA / nifB / pqqE family signature.
216591005145	Ribonucleases G and E [Translation, ribosomal structure and biogenesis]; Region: CafA; COG1530
216591005146	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
216591005147	homodimer interface [polypeptide binding]; other site
216591005148	oligonucleotide binding site [chemical binding]; other site
216591005149	HMMPfam hit to PF00575, S1 RNA binding domain, score 2.3e-13
216591005150	23S rRNA pseudouridylate synthase C; Provisional; Region: PRK11025
216591005151	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cl09940
216591005152	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
216591005153	active site
216591005154	HMMPfam hit to PF01479, S4 domain, score 1.6e-07
216591005155	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 1.9e-40
216591005156	PS01129 Rlu family of pseudouridine synthase signature.
216591005157	Predicted phosphatases [General function prediction only]; Region: Gph; COG0546
216591005158	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591005159	motif II; other site
216591005160	HAD-hyrolase-like; Region: Hydrolase_like; pfam13242
216591005161	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1e-30
216591005162	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cd03467
216591005163	iron-sulfur cluster [ion binding]; other site
216591005164	[2Fe-2S] cluster binding site [ion binding]; other site
216591005165	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 1.5e-10
216591005166	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
216591005167	signal peptide peptidase SppA, 36K type; Region: SppA_dom; TIGR00706
216591005168	tandem repeat interface [polypeptide binding]; other site
216591005169	oligomer interface [polypeptide binding]; other site
216591005170	active site residues [active]
216591005171	1 probable transmembrane helix predicted for BCAL0986 by TMHMM2.0 at aa 45-67
216591005172	HMMPfam hit to PF01343, Peptidase family S49, score 6.7e-39
216591005173	Uncharacterized subfamily of the tetrapyrrole methylase family similar to ribosomal RNA small subunit methyltransferase I (RsmI); Region: RsmI_like; cd11649
216591005174	putative SAM binding site [chemical binding]; other site
216591005175	homodimer interface [polypeptide binding]; other site
216591005176	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 2.3e-05
216591005177	Maf-like protein; Region: Maf; pfam02545
216591005178	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
216591005179	active site
216591005180	dimer interface [polypeptide binding]; other site
216591005181	HMMPfam hit to PF02545, Maf-like protein, score 1.3e-45
216591005182	Uncharacterized ACR, COG1399; Region: DUF177; pfam02620
216591005183	HMMPfam hit to PF02620, Uncharacterized ACR, COG1399, score 4.6e-19
216591005184	50S ribosomal protein L32; Validated; Region: rpmF; PRK01110
216591005185	HMMPfam hit to PF01783, Ribosomal L32p protein family, score 5e-19
216591005186	putative phosphate acyltransferase; Provisional; Region: PRK05331
216591005187	HMMPfam hit to PF02504, Fatty acid synthesis protein, score 2.5e-138
216591005188	PS00196 Type-1 copper (blue) proteins signature.
216591005189	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352
216591005190	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
216591005191	dimer interface [polypeptide binding]; other site
216591005192	active site
216591005193	CoA binding pocket [chemical binding]; other site
216591005194	HMMPfam hit to PF08545, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 7.8e-49
216591005195	HMMPfam hit to PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 3.1e-55
216591005196	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
216591005197	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
216591005198	HMMPfam hit to PF00698, Acyl transferase domain, score 5.2e-11
216591005199	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005200	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
216591005201	3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830
216591005202	NAD(P) binding site [chemical binding]; other site
216591005203	homotetramer interface [polypeptide binding]; other site
216591005204	homodimer interface [polypeptide binding]; other site
216591005205	active site
216591005206	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.1e-36
216591005207	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0031
216591005208	PS00061 Short-chain dehydrogenases/reductases family signature.
216591005209	acyl carrier protein; Provisional; Region: acpP; PRK00982
216591005210	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 1.9e-22
216591005211	PS00012 Phosphopantetheine attachment site.
216591005212	3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK07314
216591005213	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
216591005214	dimer interface [polypeptide binding]; other site
216591005215	active site
216591005216	HMMPfam hit to PF00109, Beta-ketoacyl synthase, N-terminal do, score 6.9e-82
216591005217	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005218	PS00606 Beta-ketoacyl synthases active site.
216591005219	HMMPfam hit to PF02801, Beta-ketoacyl synthase, C-terminal do, score 1.8e-60
216591005220	2 probable transmembrane helices predicted for BCAL0997 by TMHMM2.0 at aa 21-43 and 47-69
216591005221	RNA polymerase sigma factor RpoE; Region: RpoE_Sigma70; TIGR02939
216591005222	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591005223	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591005224	DNA binding residues [nucleotide binding]
216591005225	HMMPfam hit to PF04542, Sigma-70 region, score 2.9e-24
216591005226	PS01063 Sigma-70 factors ECF subfamily signature.
216591005227	HMMPfam hit to PF08281, Sigma-70, region, score 3.7e-20
216591005228	HMMPfam hit to PF04545, Sigma-70, region, score 2.4e-18
216591005229	Predicted helix-turn-helix motif with score 1461.000, SD 4.16 at aa 156-177, sequence LSYEEIAEMMGCPIGTVRSRIF
216591005230	Anti sigma-E protein RseA, N-terminal domain; Region: RseA_N; pfam03872
216591005231	1 probable transmembrane helix predicted for BCAL0999 by TMHMM2.0 at aa 111-130
216591005232	anti-sigma E factor; Provisional; Region: rseB; PRK09455
216591005233	Negative regulator of sigma E activity [Signal transduction mechanisms]; Region: RseB; COG3026
216591005234	HMMPfam hit to PF03888, MucB/RseB family, score 3.8e-28
216591005235	periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037
216591005236	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
216591005237	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591005238	protein binding site [polypeptide binding]; other site
216591005239	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591005240	protein binding site [polypeptide binding]; other site
216591005241	HMMPfam hit to PF00089, Trypsin, score 2.3e-16
216591005242	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 6.7e-08
216591005243	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 0.00082
216591005244	Glutaredoxin-like domain (DUF836); Region: DUF836; pfam05768
216591005245	HMMPfam hit to PF05768, Glutaredoxin-like domain (DUF836), score 7e-25
216591005246	GTP-binding protein LepA; Provisional; Region: PRK05433
216591005247	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
216591005248	G1 box; other site
216591005249	putative GEF interaction site [polypeptide binding]; other site
216591005250	GTP/Mg2+ binding site [chemical binding]; other site
216591005251	Switch I region; other site
216591005252	G2 box; other site
216591005253	G3 box; other site
216591005254	Switch II region; other site
216591005255	G4 box; other site
216591005256	G5 box; other site
216591005257	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
216591005258	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
216591005259	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
216591005260	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 4.7e-70
216591005261	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005262	PS00301 GTP-binding elongation factors signature.
216591005263	HMMPfam hit to PF03144, Elongation factor Tu domain, score 3.7e-10
216591005264	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 1.7e-35
216591005265	HMMPfam hit to PF06421, GTP-binding protein LepA C-terminus, score 2.2e-79
216591005266	signal peptidase I; Provisional; Region: PRK10861
216591005267	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
216591005268	Catalytic site [active]
216591005269	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
216591005270	2 probable transmembrane helices predicted for BCAL1004 by TMHMM2.0 at aa 4-26 and 72-94
216591005271	HMMPfam hit to PF00717, Peptidase S24-like, score 1.7e-26
216591005272	PS00501 Signal peptidases I serine active site.
216591005273	PS00760 Signal peptidases I lysine active site.
216591005274	PS00761 Signal peptidases I signature 3.
216591005275	ribonuclease III; Reviewed; Region: PRK12372
216591005276	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
216591005277	dimerization interface [polypeptide binding]; other site
216591005278	active site
216591005279	metal binding site [ion binding]; metal-binding site
216591005280	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
216591005281	HMMPfam hit to PF00636, RNase3 domain, score 5.8e-44
216591005282	PS00517 Ribonuclease III family signature.
216591005283	HMMPfam hit to PF00035, Double-stranded RNA binding motif, score 1.3e-14
216591005284	GTPase Era; Reviewed; Region: era; PRK00089
216591005285	E. coli Ras-like protein (Era) is a multifunctional GTPase; Region: Era; cd04163
216591005286	G1 box; other site
216591005287	GTP/Mg2+ binding site [chemical binding]; other site
216591005288	Switch I region; other site
216591005289	G2 box; other site
216591005290	Switch II region; other site
216591005291	G3 box; other site
216591005292	G4 box; other site
216591005293	G5 box; other site
216591005294	KH domain; Region: KH_2; pfam07650
216591005295	HMMPfam hit to PF01926, GTPase of unknown function, score 1.6e-38
216591005296	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005297	HMMPfam hit to PF07650, KH domain, score 1e-25
216591005298	DNA repair protein RecO; Reviewed; Region: recO; PRK00085
216591005299	Recombination protein O N terminal; Region: RecO_N; pfam11967
216591005300	Recombination protein O C terminal; Region: RecO_C; pfam02565
216591005301	HMMPfam hit to PF02565, Recombination protein O, score 9.7e-21
216591005302	Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in...; Region: PNPsynthase; cd00003
216591005303	active site
216591005304	hydrophilic channel; other site
216591005305	dimerization interface [polypeptide binding]; other site
216591005306	catalytic residues [active]
216591005307	active site lid [active]
216591005308	HMMPfam hit to PF03740, Pyridoxal phosphate biosynthesis protein Pdx, score 6.7e-138
216591005309	4'-phosphopantetheinyl transferase; Provisional; Region: acpS; PRK00070
216591005310	HMMPfam hit to PF01648, 4'-phosphopantetheinyl transferase superfami, score 1.8e-10
216591005311	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
216591005312	beta-hexosaminidase; Provisional; Region: PRK05337
216591005313	HMMPfam hit to PF00933, Glycosyl hydrolase family 3 N terminal, score 2.6e-32
216591005314	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591005315	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
216591005316	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591005317	active site
216591005318	phosphorylation site [posttranslational modification]
216591005319	intermolecular recognition site; other site
216591005320	dimerization interface [polypeptide binding]; other site
216591005321	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591005322	Walker A motif; other site
216591005323	ATP binding site [chemical binding]; other site
216591005324	Walker B motif; other site
216591005325	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591005326	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 1.6e-12
216591005327	Predicted helix-turn-helix motif with score 1795.000, SD 5.30 at aa 435-456, sequence GTRHRAATLLGISPKTLYNKLQ
216591005328	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 4.1e-69
216591005329	HMMPfam hit to PF00072, Response regulator receiver domain, score 7e-34
216591005330	elongation factor P; Validated; Region: PRK00529
216591005331	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
216591005332	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
216591005333	RNA binding site [nucleotide binding]; other site
216591005334	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
216591005335	RNA binding site [nucleotide binding]; other site
216591005336	HMMPfam hit to PF01132, Elongation factor P (EF-P) OB domain, score 2.4e-12
216591005337	HMMPfam hit to PF08207, Elongation factor P (EF-P) KOW-like domain, score 3.1e-05
216591005338	Uncharacterized protein conserved in bacteria (DUF2331); Region: DUF2331; pfam10093
216591005339	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4394
216591005340	CDS is interrupted by IS element insertion after codon 126. Similar to Burkholderia pseudomallei putative excinuclease ABC subunit C UniProt:Q63SA4 (EMBL:BX571965) (745 aa) fasta scores: E()=9e-108, 78.331% id in 743 aa
216591005341	HMMPfam hit to PF01541, GIY-YIG catalytic domain, score 3.9e-28
216591005342	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591005343	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591005344	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591005345	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591005346	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591005347	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005348	HMMPfam hit to PF02151, UvrB/uvrC motif, score 1.2e-07
216591005349	HMMPfam hit to PF08459, UvrC Helix-hairpin-helix N-terminal, score 6.3e-78
216591005350	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453
216591005351	5 probable transmembrane helices predicted for BCAL1019 by TMHMM2.0 at aa 5-27, 34-53, 80-102, 135-157 and 161-180
216591005352	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 6.3e-39
216591005353	PS00379 CDP-alcohol phosphatidyltransferases signature.
216591005354	Cache domain; Region: Cache_1; pfam02743
216591005355	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591005356	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591005357	metal binding site [ion binding]; metal-binding site
216591005358	active site
216591005359	I-site; other site
216591005360	2 probable transmembrane helices predicted for BCAL1020 by TMHMM2.0 at aa 6-28 and 288-310
216591005361	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005362	HMMPfam hit to PF00990, GGDEF domain, score 5.9e-75
216591005363	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591005364	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 2.5e-06
216591005365	Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]; Region: COG1247
216591005366	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.6e-15
216591005367	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591005368	sequence-specific DNA binding site [nucleotide binding]; other site
216591005369	salt bridge; other site
216591005370	Cupin domain; Region: Cupin_2; cl17218
216591005371	HMMPfam hit to PF07883, Cupin domain, score 0.0031
216591005372	HMMPfam hit to PF01381, Helix-turn-helix, score 2.6e-11
216591005373	Predicted helix-turn-helix motif with score 1253.000, SD 3.45 at aa 31-52, sequence YTLDTLAARSGVSRSMISLIER
216591005374	Protein of unknown function (DUF3423); Region: DUF3423; pfam11903
216591005375	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
216591005376	active site
216591005377	HMMPfam hit to PF00557, metallopeptidase family M24, score 1.1e-84
216591005378	PS00215 Mitochondrial energy transfer proteins signature.
216591005379	PS00680 Methionine aminopeptidase subfamily 1 signature.
216591005380	GAF domain-containing protein [Signal transduction mechanisms]; Region: COG1956
216591005381	PS01320 Uncharacterized protein family UPF0067 signature.
216591005382	Similar to Anabaena sp. putative transposase SWALL:O68472 (EMBL:AF047044) (320 aa) fasta scores: E(): 2.9e-36, 40.83% id in 311 aa. CDS contains nonsense mutation (amber) after codon 62 and a frameshift mutation after codon 137
216591005383	HMMPfam hit to PF01548, Transposase, score 4.7e-12
216591005384	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591005385	LysR family transcriptional regulator; Provisional; Region: PRK14997
216591005386	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591005387	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_4; cd08473
216591005388	putative effector binding pocket; other site
216591005389	putative dimerization interface [polypeptide binding]; other site
216591005390	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.5e-38
216591005391	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005392	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1e-15
216591005393	Pirin-related protein [General function prediction only]; Region: COG1741
216591005394	Pirin; Region: Pirin; pfam02678
216591005395	Pirin C-terminal cupin domain; Region: Pirin_C; pfam05726
216591005396	HMMPfam hit to PF02678, Pirin, score 5.8e-54
216591005397	HMMPfam hit to PF05726, Pirin C-terminal cupin domain, score 4e-43
216591005398	RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169
216591005399	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591005400	Coenzyme A binding pocket [chemical binding]; other site
216591005401	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.2e-07
216591005402	Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); Region: Caa3_CtaG; pfam09678
216591005403	7 probable transmembrane helices predicted for BCAL1032 by TMHMM2.0 at aa 10-29, 42-61, 76-98, 127-149, 153-175, 188-210 and 236-258
216591005404	Protein of unknown function (DUF461); Region: DUF461; pfam04314
216591005405	HMMPfam hit to PF04314, Protein of unknown function (DUF461), score 1.1e-30
216591005406	1 probable transmembrane helix predicted for BCAL1033 by TMHMM2.0 at aa 12-34
216591005407	SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c...; Region: SCO; cd02968
216591005408	Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]; Region: COG1999
216591005409	Cu(I) binding site [ion binding]; other site
216591005410	HMMPfam hit to PF02630, SCO1/SenC, score 3.2e-24
216591005411	trehalose-6-phosphate phosphatase; Provisional; Region: PRK10187; cl17105
216591005412	Trehalose-phosphatase; Region: Trehalose_PPase; pfam02358
216591005413	HMMPfam hit to PF02358, Trehalose-phosphatase, score 5.2e-63
216591005414	Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a...; Region: GT1_TPS; cd03788
216591005415	alpha,alpha-trehalose-phosphate synthase [UDP-forming]; Region: trehalose_OtsA; TIGR02400
216591005416	active site
216591005417	homotetramer interface [polypeptide binding]; other site
216591005418	HMMPfam hit to PF00982, Glycosyltransferase family, score 8.1e-157
216591005419	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591005420	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591005421	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591005422	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591005423	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591005424	putative transposase OrfB; Reviewed; Region: PHA02517
216591005425	HTH-like domain; Region: HTH_21; pfam13276
216591005426	Integrase core domain; Region: rve; pfam00665
216591005427	Integrase core domain; Region: rve_2; pfam13333
216591005428	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591005429	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
216591005430	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
216591005431	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591005432	Walker A/P-loop; other site
216591005433	ATP binding site [chemical binding]; other site
216591005434	Q-loop/lid; other site
216591005435	ABC transporter signature motif; other site
216591005436	Walker B; other site
216591005437	D-loop; other site
216591005438	H-loop/switch region; other site
216591005439	HMMPfam hit to PF00005, ABC transporter, score 2e-65
216591005440	PS00211 ABC transporters family signature.
216591005441	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005442	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 2.2e-05
216591005443	5 probable transmembrane helices predicted for BCAL1039 by TMHMM2.0 at aa 37-59, 74-96, 155-174, 178-195 and 263-285
216591005444	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005445	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005446	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591005447	This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant...; Region: GT1_AviGT4_like; cd03802
216591005448	putative ADP-binding pocket [chemical binding]; other site
216591005449	HMMPfam hit to PF00534, Glycosyl transferases group, score 9.1e-23
216591005450	4 probable transmembrane helices predicted for BCAL1041 by TMHMM2.0 at aa 12-34, 49-71, 91-113 and 118-140
216591005451	Predicted membrane protein (DUF2214); Region: DUF2214; pfam09980
216591005452	4 probable transmembrane helices predicted for BCAL1042 by TMHMM2.0 at aa 5-24, 49-68, 88-107 and 128-150
216591005453	glucarate dehydratase; Region: glucar-dehydr; TIGR03247
216591005454	D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes; Region: D-glucarate_dehydratase; cd03323
216591005455	active site
216591005456	tetramer interface [polypeptide binding]; other site
216591005457	PS00294 Prenyl group binding site (CAAX box).
216591005458	HMMPfam hit to PF01188, Mandelate racemase / muconate lactonizing en, score 7.6e-06
216591005459	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591005460	phosphonate utilization associated transcriptional regulator; Region: phnR_burk; TIGR03338
216591005461	DNA-binding site [nucleotide binding]; DNA binding site
216591005462	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
216591005463	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 5.5e-23
216591005464	HMMPfam hit to PF07729, FCD domain, score 6.7e-39
216591005465	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591005466	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591005467	dimerization interface [polypeptide binding]; other site
216591005468	ligand binding site [chemical binding]; other site
216591005469	HMMPfam hit to PF01094, Receptor family ligand binding region, score 7e-46
216591005470	phospholipase C, phosphocholine-specific, Pseudomonas-type; Region: PC_PLC; TIGR03396
216591005471	Phosphoesterase family; Region: Phosphoesterase; pfam04185
216591005472	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591005473	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591005474	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 3.2e-29
216591005475	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 2.1e-38
216591005476	HMMPfam hit to PF04185, Phosphoesterase family, score 1e-190
216591005477	pyridoxamine kinase; Validated; Region: PRK05756
216591005478	Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and...; Region: pyridoxal_pyridoxamine_kinase; cd01173
216591005479	dimer interface [polypeptide binding]; other site
216591005480	pyridoxal binding site [chemical binding]; other site
216591005481	ATP binding site [chemical binding]; other site
216591005482	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591005483	Alpha/beta hydrolase of unknown function (DUF1057); Region: DUF1057; pfam06342
216591005484	1 probable transmembrane helix predicted for BCAL1048 by TMHMM2.0 at aa 13-35
216591005485	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005486	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.3e-18
216591005487	luciferase family oxidoreductase, group 1; Region: oxido_grp_1; TIGR03558
216591005488	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892
216591005489	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cd00347
216591005490	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 3.3e-22
216591005491	Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis; Region: Glucosylceramide_synthase; cd02520
216591005492	ligand binding site; other site
216591005493	Glycosyl transferase family 21; Region: Glyco_transf_21; pfam13506
216591005494	3 probable transmembrane helices predicted for BCAL1050 by TMHMM2.0 at aa 10-32, 283-305 and 309-331
216591005495	HMMPfam hit to PF00535, Glycosyl transferase family, score 2e-06
216591005496	hopanoid biosynthesis associated radical SAM protein HpnJ; Region: HpnJ; TIGR03471
216591005497	B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase; Region: B12-binding_like; cl00293
216591005498	B12 binding site [chemical binding]; other site
216591005499	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591005500	FeS/SAM binding site; other site
216591005501	HMMPfam hit to PF04055, Radical SAM superfamily, score 7.9e-22
216591005502	hopanoid biosynthesis associated protein HpnK and similar proteins; Region: YdjC_HpnK_like; cd10804
216591005503	putative active site [active]
216591005504	YdjC motif; other site
216591005505	Mg binding site [ion binding]; other site
216591005506	putative homodimer interface [polypeptide binding]; other site
216591005507	HMMPfam hit to PF04794, YdjC-like protein, score 7.8e-21
216591005508	Uncharacterized protein family (UPF0104); Region: UPF0104; cl04219
216591005509	5 probable transmembrane helices predicted for BCAL1053 by TMHMM2.0 at aa 7-26, 36-58, 116-138, 143-165 and 211-233
216591005510	SmpA / OmlA family; Region: SmpA_OmlA; cl17115
216591005511	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005512	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591005513	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591005514	dimer interface [polypeptide binding]; other site
216591005515	conserved gate region; other site
216591005516	putative PBP binding loops; other site
216591005517	ABC-ATPase subunit interface; other site
216591005518	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 6.3e-31
216591005519	5 probable transmembrane helices predicted for BCAL1055 by TMHMM2.0 at aa 15-37, 56-78, 93-110, 150-172 and 192-214
216591005520	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591005521	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005522	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591005523	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591005524	dimer interface [polypeptide binding]; other site
216591005525	conserved gate region; other site
216591005526	putative PBP binding loops; other site
216591005527	ABC-ATPase subunit interface; other site
216591005528	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.8e-23
216591005529	5 probable transmembrane helices predicted for BCAL1056 by TMHMM2.0 at aa 20-42, 63-85, 105-127, 160-182 and 197-219
216591005530	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591005531	Predicted helix-turn-helix motif with score 1141.000, SD 3.07 at aa 130-151, sequence HGEVEAARAYGMSPFTMYRRVI
216591005532	ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; Region: HisP; COG4598
216591005533	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591005534	Walker A/P-loop; other site
216591005535	ATP binding site [chemical binding]; other site
216591005536	Q-loop/lid; other site
216591005537	ABC transporter signature motif; other site
216591005538	Walker B; other site
216591005539	D-loop; other site
216591005540	H-loop/switch region; other site
216591005541	HMMPfam hit to PF00005, ABC transporter, score 1.5e-67
216591005542	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005543	PS00211 ABC transporters family signature.
216591005544	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591005545	AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_ArgR_like; cd03136
216591005546	conserved cys residue [active]
216591005547	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591005548	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591005549	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1e-07
216591005550	Predicted helix-turn-helix motif with score 1646.000, SD 4.79 at aa 236-257, sequence LTTDEIAGLVGVSRRQLERLFR
216591005551	PS00041 Bacterial regulatory proteins, araC family signature.
216591005552	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 9.4e-11
216591005553	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed; Region: argD; PRK05093
216591005554	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591005555	inhibitor-cofactor binding pocket; inhibition site
216591005556	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591005557	catalytic residue [active]
216591005558	HMMPfam hit to PF00202, Aminotransferase class-III, score 1e-146
216591005559	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591005560	Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]; Region: AstA; COG3138
216591005561	Arginine N-succinyltransferase beta subunit; Region: AstA; cl11440
216591005562	HMMPfam hit to PF04958, Arginine N-succinyltransferase beta subunit, score 2.4e-105
216591005563	Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]; Region: AstA; COG3138
216591005564	arginine N-succinyltransferase; Region: arg_catab_AstA; TIGR03244
216591005565	HMMPfam hit to PF04958, Arginine N-succinyltransferase beta subunit, score 4.9e-161
216591005566	succinylglutamic semialdehyde dehydrogenase; Reviewed; Region: astD; PRK09457
216591005567	N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like; Region: ALDH_SGSD_AstD; cd07095
216591005568	NAD(P) binding site [chemical binding]; other site
216591005569	catalytic residues [active]
216591005570	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 9.6e-128
216591005571	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591005572	PS00070 Aldehyde dehydrogenases cysteine active site.
216591005573	succinylarginine dihydrolase; Provisional; Region: PRK13281
216591005574	HMMPfam hit to PF04996, Succinylarginine dihydrolase, score 1.1e-268
216591005575	succinylglutamate desuccinylase; Provisional; Region: PRK05324
216591005576	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
216591005577	active site
216591005578	Zn binding site [ion binding]; other site
216591005579	HMMPfam hit to PF04952, Succinylglutamate desuccinylase / Aspartoac, score 1.3e-69
216591005580	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591005581	lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096
216591005582	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591005583	substrate binding pocket [chemical binding]; other site
216591005584	membrane-bound complex binding site; other site
216591005585	hinge residues; other site
216591005586	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.7e-89
216591005587	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591005588	putative transposase OrfB; Reviewed; Region: PHA02517
216591005589	HTH-like domain; Region: HTH_21; pfam13276
216591005590	Integrase core domain; Region: rve; pfam00665
216591005591	Integrase core domain; Region: rve_2; pfam13333
216591005592	HMMPfam hit to PF00665, Integrase core domain, score 3.8e-47
216591005593	Predicted helix-turn-helix motif with score 1108.000, SD 2.96 at aa 8-29, sequence HPVAALLKAAGLARSTFYYQLK
216591005594	PS00228 Tubulin-beta mRNA autoregulation signal.
216591005595	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591005596	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591005597	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591005598	HMMPfam hit to PF02178, AT hook motif, score 0.016
216591005599	HMMPfam hit to PF01527, Transposase, score 0.0012
216591005600	Predicted helix-turn-helix motif with score 1296.000, SD 3.60 at aa 21-42, sequence AGTKTLAHRYGVGRTMVRRWVA
216591005601	HDOD domain; Region: HDOD; pfam08668
216591005602	PAS domain; Region: PAS_9; pfam13426
216591005603	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591005604	putative active site [active]
216591005605	heme pocket [chemical binding]; other site
216591005606	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591005607	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591005608	metal binding site [ion binding]; metal-binding site
216591005609	active site
216591005610	I-site; other site
216591005611	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591005612	HMMPfam hit to PF00563, EAL domain, score 3.9e-116
216591005613	HMMPfam hit to PF00990, GGDEF domain, score 8.1e-33
216591005614	HMMPfam hit to PF08448, PAS fold, score 0.0044
216591005615	Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing...; Region: PRX_BCP; cd03017
216591005616	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591005617	catalytic triad [active]
216591005618	HMMPfam hit to PF08534, Redoxin, score 2.4e-17
216591005619	HMMPfam hit to PF00578, AhpC/TSA family, score 1.7e-10
216591005620	atypical (a) SDRs, subgroup 5; Region: SDR_a5; cd05243
216591005621	NADH(P)-binding; Region: NAD_binding_10; pfam13460
216591005622	NAD(P) binding site [chemical binding]; other site
216591005623	putative active site [active]
216591005624	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 8.8e-05
216591005625	NYN domain; Region: NYN; pfam01936
216591005626	putative metal binding site [ion binding]; other site
216591005627	Uncharacterized conserved protein [Function unknown]; Region: COG1432
216591005628	C-terminal domain of LabA_like proteins; Region: LabA_like_C; cd10146
216591005629	HMMPfam hit to PF01936, Protein of unknown function DUF88, score 3.4e-11
216591005630	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632
216591005631	active site
216591005632	metal binding site [ion binding]; metal-binding site
216591005633	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 3.8e-05
216591005634	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080
216591005635	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591005636	catalytic loop [active]
216591005637	iron binding site [ion binding]; other site
216591005638	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591005639	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 6.9e-12
216591005640	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591005641	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 1.7e-32
216591005642	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591005643	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591005644	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591005645	1 probable transmembrane helix predicted for BCAL1075 by TMHMM2.0 at aa 13-35
216591005646	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 1.2e-08
216591005647	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591005648	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591005649	eyelet of channel; other site
216591005650	trimer interface [polypeptide binding]; other site
216591005651	PS00572 Glycosyl hydrolases family 1 active site.
216591005652	Cupin; Region: Cupin_6; pfam12852
216591005653	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591005654	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591005655	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591005656	PS00041 Bacterial regulatory proteins, araC family signature.
216591005657	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1e-06
216591005658	Predicted helix-turn-helix motif with score 1288.000, SD 3.57 at aa 225-246, sequence WQLASLAAEAGMSRSRFCAHFA
216591005659	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 5.5e-06
216591005660	IclR helix-turn-helix domain; Region: HTH_IclR; cl17605
216591005661	multidrug efflux system subunit MdtC; Provisional; Region: PRK10614
216591005662	Protein export membrane protein; Region: SecD_SecF; cl14618
216591005663	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591005664	10 probable transmembrane helices predicted for BCAL1079 by TMHMM2.0 at aa 7-29, 336-353, 360-382, 434-456, 463-485, 527-549, 922-944, 964-986, 1017-1039 and 1054-1076
216591005665	multidrug efflux system subunit MdtB; Provisional; Region: PRK10503
216591005666	Protein export membrane protein; Region: SecD_SecF; cl14618
216591005667	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591005668	10 probable transmembrane helices predicted for BCAL1080 by TMHMM2.0 at aa 7-29, 334-353, 360-382, 431-453, 460-482, 529-548, 858-880, 900-922, 953-975 and 990-1012
216591005669	PS00152 ATP synthase alpha and beta subunits signature.
216591005670	multidrug efflux system subunit MdtA; Provisional; Region: PRK11556
216591005671	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591005672	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591005673	HMMPfam hit to PF00529, HlyD family secretion protein, score 6.2e-24
216591005674	1 probable transmembrane helix predicted for BCAL1081 by TMHMM2.0 at aa 26-45
216591005675	CDS contains a nonsense mutation (ochre) after codon 46. Similar to Burkholderia cenocepacia HI2424 IclR family regulatory protein UniProt:Q4LT17 (EMBL:AAHL01000018) (274 aa) fasta scores: E()=1.6e-96, 97.080% id in 274 aa
216591005676	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 9e-06
216591005677	Bacterial protein of unknown function (DUF839); Region: DUF839; pfam05787
216591005678	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005679	Ammonia permease [Inorganic ion transport and metabolism]; Region: AmtB; COG0004
216591005680	HMMPfam hit to PF00909, Ammonium Transporter Family, score 5.6e-88
216591005681	9 probable transmembrane helices predicted for BCAL1084 by TMHMM2.0 at aa 10-32, 44-66, 86-108, 115-137, 157-179, 227-249, 278-300, 307-329 and 344-366
216591005682	PS01219 Ammonium transporters signature.
216591005683	3 probable transmembrane helices predicted for BCAL1085 by TMHMM2.0 at aa 4-23, 43-65 and 75-97
216591005684	1 probable transmembrane helix predicted for BCAL1086 by TMHMM2.0 at aa 13-30
216591005685	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005686	Predicted transcriptional regulator [Transcription]; Region: COG1959
216591005687	Transcriptional regulator; Region: Rrf2; pfam02082
216591005688	HMMPfam hit to PF02082, Transcriptional regulator, score 7.5e-42
216591005689	biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs; Region: BVR-B_like_SDR_a; cd05244
216591005690	NADH(P)-binding; Region: NAD_binding_10; pfam13460
216591005691	NAD binding site [chemical binding]; other site
216591005692	putative active site [active]
216591005693	substrate binding site [chemical binding]; other site
216591005694	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 7e-05
216591005695	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591005696	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591005697	putative DNA binding site [nucleotide binding]; other site
216591005698	putative Zn2+ binding site [ion binding]; other site
216591005699	AsnC family; Region: AsnC_trans_reg; pfam01037
216591005700	Predicted helix-turn-helix motif with score 1415.000, SD 4.01 at aa 18-39, sequence LPIAELAQRVNLSQTPCWKRVQ
216591005701	PS00519 Bacterial regulatory proteins, asnC family signature.
216591005702	HMMPfam hit to PF01037, AsnC family, score 2.8e-28
216591005703	ATP-binding cassette domain of the carbohydrate and solute transporters-like; Region: ABC_Carb_Solutes_like; cd03259
216591005704	sulfate ABC transporter, ATP-binding protein; Region: 3a0106s01; TIGR00968
216591005705	Walker A/P-loop; other site
216591005706	ATP binding site [chemical binding]; other site
216591005707	Q-loop/lid; other site
216591005708	ABC transporter signature motif; other site
216591005709	Walker B; other site
216591005710	D-loop; other site
216591005711	H-loop/switch region; other site
216591005712	HMMPfam hit to PF00005, ABC transporter, score 1.4e-57
216591005713	PS00211 ABC transporters family signature.
216591005714	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005715	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
216591005716	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591005717	dimer interface [polypeptide binding]; other site
216591005718	conserved gate region; other site
216591005719	putative PBP binding loops; other site
216591005720	ABC-ATPase subunit interface; other site
216591005721	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
216591005722	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591005723	dimer interface [polypeptide binding]; other site
216591005724	conserved gate region; other site
216591005725	putative PBP binding loops; other site
216591005726	ABC-ATPase subunit interface; other site
216591005727	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.0031
216591005728	12 probable transmembrane helices predicted for BCAL1091 by TMHMM2.0 at aa 32-54, 78-100, 107-129, 164-186, 206-228, 260-282, 303-325, 352-374, 395-417, 432-451, 487-506 and 539-558
216591005729	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005730	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.8e-19
216591005731	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591005732	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005733	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
216591005734	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
216591005735	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 2.2e-12
216591005736	1 probable transmembrane helix predicted for BCAL1093 by TMHMM2.0 at aa 12-34
216591005737	putative proline-specific permease; Provisional; Region: proY; PRK10580
216591005738	Spore germination protein; Region: Spore_permease; cl17796
216591005739	HMMPfam hit to PF00324, Amino acid permease, score 6e-127
216591005740	12 probable transmembrane helices predicted for BCAL1094 by TMHMM2.0 at aa 12-29, 33-55, 93-115, 120-142, 154-176, 196-218, 239-261, 281-303, 329-351, 355-377, 398-420 and 424-446
216591005741	PS00218 Amino acid permeases signature.
216591005742	integral membrane protein, YccS/YhfK family; Region: YCCS_YHJK; TIGR01667
216591005743	FUSC-like inner membrane protein yccS; Region: FUSC-like; pfam12805
216591005744	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591005745	HMMPfam hit to PF05976, Bacterial membrane protein of unknown functi, score 4.4e-48
216591005746	8 probable transmembrane helices predicted for BCAL1095 by TMHMM2.0 at aa 15-37, 69-86, 90-112, 133-155, 408-430, 451-468, 483-505 and 518-540
216591005747	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005748	exonuclease V subunit gamma; Provisional; Region: recC; PRK11069
216591005749	Exodeoxyribonuclease V, gamma subunit; Region: Exonuc_V_gamma; pfam04257
216591005750	HMMPfam hit to PF04257, Exodeoxyribonuclease V, gamma subunit, score 2e-168
216591005751	UvrD/REP helicase N-terminal domain; Region: UvrD-helicase; pfam00580
216591005752	UvrD-like helicase C-terminal domain; Region: UvrD_C; pfam13361
216591005753	Family description; Region: UvrD_C_2; pfam13538
216591005754	PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1; pfam12705
216591005755	HMMPfam hit to PF00580, UvrD/REP helicase, score 1.6e-44
216591005756	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005757	AAA domain; Region: AAA_30; pfam13604
216591005758	Family description; Region: UvrD_C_2; pfam13538
216591005759	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005760	hypothetical protein; Provisional; Region: PRK09256
216591005761	Protein chain release factor B [Translation, ribosomal structure and biogenesis]; Region: PrfB; COG1186
216591005762	HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase domain, score 2e-26
216591005763	PS00745 Prokaryotic-type class I peptide chain release factors signature.
216591005764	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591005765	HMMPfam hit to PF00563, EAL domain, score 4.8e-28
216591005766	EamA-like transporter family; Region: EamA; pfam00892
216591005767	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
216591005768	EamA-like transporter family; Region: EamA; pfam00892
216591005769	10 probable transmembrane helices predicted for BCAL1101 by TMHMM2.0 at aa 5-27, 32-54, 67-89, 94-116, 123-145, 155-174, 187-209, 219-241, 248-267 and 272-294
216591005770	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.6e-20
216591005771	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005772	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 3.4e-17
216591005773	2 probable transmembrane helices predicted for BCAL1102 by TMHMM2.0 at aa 27-46 and 76-98
216591005774	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005775	1 probable transmembrane helix predicted for BCAL1103 by TMHMM2.0 at aa 34-56
216591005776	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005777	thiamine biosynthesis protein ThiC; Provisional; Region: PRK09284
216591005778	ThiC-associated domain; Region: ThiC-associated; pfam13667
216591005779	Thiamine biosynthesis protein ThiC [Coenzyme metabolism]; Region: ThiC; COG0422
216591005780	HMMPfam hit to PF01964, ThiC family, score 0
216591005781	1 probable transmembrane helix predicted for BCAL1105 by TMHMM2.0 at aa 4-22
216591005782	Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]; Region: COG4117
216591005783	Cytochrome b(N-terminal)/b6/petB; Region: Cytochrom_B_N; pfam00033
216591005784	HMMPfam hit to PF01292, Cytochrome b561 family, score 0.0032
216591005785	4 probable transmembrane helices predicted for BCAL1106 by TMHMM2.0 at aa 29-46, 70-92, 137-156 and 176-198
216591005786	Sulfite oxidase and related enzymes [General function prediction only]; Region: COG2041
216591005787	Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199
216591005788	Moco binding site; other site
216591005789	metal coordination site [ion binding]; other site
216591005790	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005791	HMMPfam hit to PF00174, Oxidoreductase molybdopterin binding d, score 5.8e-63
216591005792	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591005793	non-specific DNA binding site [nucleotide binding]; other site
216591005794	salt bridge; other site
216591005795	sequence-specific DNA binding site [nucleotide binding]; other site
216591005796	HMMPfam hit to PF01381, Helix-turn-helix, score 1.5e-06
216591005797	Predicted helix-turn-helix motif with score 2019.000, SD 6.06 at aa 42-63, sequence LSQAEAAKQLGVTQPRVSDLMR
216591005798	Phage derived protein Gp49-like (DUF891); Region: Gp49; cl01470
216591005799	HMMPfam hit to PF05973, Phage derived protein Gp49-like (DUF891), score 5.5e-18
216591005800	putative DMT superfamily transporter inner membrane protein; Provisional; Region: PRK11272
216591005801	10 probable transmembrane helices predicted for BCAL1110 by TMHMM2.0 at aa 32-49, 59-81, 93-115, 119-141, 148-170, 174-191, 204-226, 236-258, 265-287 and 292-311
216591005802	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 8.9e-14
216591005803	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 6.3e-14
216591005804	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591005805	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591005806	12 probable transmembrane helices predicted for BCAL1111 by TMHMM2.0 at aa 35-57, 72-94, 101-120, 124-146, 159-181, 185-207, 241-263, 273-295, 302-320, 324-341, 361-383 and 387-406
216591005807	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.6e-33
216591005808	Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain; Region: MPP_GpdQ; cd07402
216591005809	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
216591005810	active site
216591005811	metal binding site [ion binding]; metal-binding site
216591005812	hexamer interface [polypeptide binding]; other site
216591005813	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 4.6e-15
216591005814	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
216591005815	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591005816	Walker A/P-loop; other site
216591005817	ATP binding site [chemical binding]; other site
216591005818	Q-loop/lid; other site
216591005819	ABC transporter signature motif; other site
216591005820	Walker B; other site
216591005821	D-loop; other site
216591005822	H-loop/switch region; other site
216591005823	TOBE domain; Region: TOBE_2; pfam08402
216591005824	HMMPfam hit to PF08402, TOBE domain, score 8.3e-08
216591005825	HMMPfam hit to PF00005, ABC transporter, score 3e-62
216591005826	PS00211 ABC transporters family signature.
216591005827	PS00148 Arginase family signature 2.
216591005828	PS00017 ATP/GTP-binding site motif A (P-loop).
216591005829	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
216591005830	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591005831	dimer interface [polypeptide binding]; other site
216591005832	conserved gate region; other site
216591005833	putative PBP binding loops; other site
216591005834	ABC-ATPase subunit interface; other site
216591005835	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.0006
216591005836	6 probable transmembrane helices predicted for BCAL1114 by TMHMM2.0 at aa 21-43, 78-100, 113-135, 141-163, 200-222 and 247-269
216591005837	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591005838	dimer interface [polypeptide binding]; other site
216591005839	conserved gate region; other site
216591005840	ABC-ATPase subunit interface; other site
216591005841	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.1e-15
216591005842	6 probable transmembrane helices predicted for BCAL1115 by TMHMM2.0 at aa 12-34, 63-85, 94-116, 136-158, 198-220 and 240-262
216591005843	PS00041 Bacterial regulatory proteins, araC family signature.
216591005844	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
216591005845	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
216591005846	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 0.00085
216591005847	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591005848	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591005849	DNA binding site [nucleotide binding]
216591005850	domain linker motif; other site
216591005851	Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR_like_2; cd06282
216591005852	putative dimerization interface [polypeptide binding]; other site
216591005853	putative ligand binding site [chemical binding]; other site
216591005854	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 2.2e-23
216591005855	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 9.7e-08
216591005856	Predicted helix-turn-helix motif with score 1753.000, SD 5.16 at aa 3-24, sequence STIKDVAALAGFSIATVSRAIN
216591005857	BcenGI5
216591005858	integrase; Provisional; Region: PRK09692
216591005859	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
216591005860	active site
216591005861	Int/Topo IB signature motif; other site
216591005862	HMMPfam hit to PF00589, Phage integrase family, score 4e-10
216591005863	Prophage CP4-57 regulatory protein (AlpA); Region: Phage_AlpA; cl17523
216591005864	Protein of unknown function (DUF3987); Region: DUF3987; pfam13148
216591005865	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005866	Protein of unknown function (DUF3296); Region: DUF3296; pfam11726
216591005867	CDS is interrupted by IS element insertion after codon 261. Similar to Escherichia coli O157:H7 hypothetical protein UniProt:Q8X405 (EMBL:AE005174) (302 aa) fasta scores: E()=0.0016, 25.987% id in 304 aa
216591005868	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591005869	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
216591005870	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
216591005871	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
216591005872	HMMPfam hit to PF01609, Transposase DDE domain, score 3.6e-32
216591005873	Domain of unknown function (DUF955); Region: DUF955; pfam06114
216591005874	HMMPfam hit to PF06114, Domain of unknown function (DUF955), score 1.6e-14
216591005875	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591005876	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591005877	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591005878	non-specific DNA binding site [nucleotide binding]; other site
216591005879	salt bridge; other site
216591005880	sequence-specific DNA binding site [nucleotide binding]; other site
216591005881	HMMPfam hit to PF01381, Helix-turn-helix, score 6.5e-10
216591005882	Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme; Region: NT_2-5OAS_ClassI-CCAase; cd05400
216591005883	active site
216591005884	NTP binding site [chemical binding]; other site
216591005885	metal binding triad [ion binding]; metal-binding site
216591005886	CDS interrupted by IS element insertion after codon 94. Similar to Lactococcus lactis hypothetical protein ORF00028 UniProt:O87230 (EMBL:AE001272) (252 aa) fasta scores: E()=5.7e-13, 27.888% id in 251 aa
216591005887	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591005888	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
216591005889	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
216591005890	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
216591005891	HMMPfam hit to PF01609, Transposase DDE domain, score 3.6e-32
216591005892	Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only]; Region: COG5516
216591005893	Protein of unknown function (DUF1470); Region: DUF1470; pfam07336
216591005894	CGNR zinc finger; Region: zf-CGNR; pfam11706
216591005895	HMMPfam hit to PF07336, Protein of unknown function (DUF1470), score 1.4e-41
216591005896	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591005897	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591005898	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 2.2e-21
216591005899	Probable gene remnant. CDS is truncated by the insertion of the upstream IS element and lacks an appropriate translational start site. Similar to the C-terminal region of Burkholderia vietnamiensis G4 helix-turn-helix, AraC type protein UniProt:Q4BC89 (EMBL:AAEH02000043) (316 aa) fasta scores: E()=8.2e-34, 38.796% id in 299 aa
216591005900	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.1e-06
216591005901	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00039
216591005902	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
216591005903	DNA-binding interface [nucleotide binding]; DNA binding site
216591005904	HMMPfam hit to PF01527, Transposase, score 8.2e-25
216591005905	Predicted helix-turn-helix motif with score 1325.000, SD 3.70 at aa 22-43, sequence TPVAEVCRKMGISDATFYNWRT
216591005906	putative transposase OrfB; Reviewed; Region: PHA02517
216591005907	HTH-like domain; Region: HTH_21; pfam13276
216591005908	Integrase core domain; Region: rve; pfam00665
216591005909	Integrase core domain; Region: rve_3; pfam13683
216591005910	HMMPfam hit to PF00665, Integrase core domain, score 9.5e-40
216591005911	C-terminus is similar to Ralstonia solanacearum ISRso17-transposase protein SWALL:Q8XF94 (EMBL:AL646078) (443 aa) fasta scores: E(): 6.4e-23, 65.65% id in 99 aa
216591005912	Probable gene remnant. Similar to the C-tyerminal region of Burkholderia pseudomallei putative dehydrogenase UniProt:Q63VC6 (EMBL:BX571965) (256 aa) fasta scores: E()=1.5e-08, 74.359% id in 39 aa
216591005913	Domain of unknown function (DUF4105); Region: DUF4105; pfam13387
216591005914	6 probable transmembrane helices predicted for BCAL1145 by TMHMM2.0 at aa 13-35, 45-67, 74-93, 97-119, 126-145 and 149-171
216591005915	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591005916	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591005917	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591005918	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.2e-10
216591005919	PS00041 Bacterial regulatory proteins, araC family signature.
216591005920	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.0018
216591005921	Predicted helix-turn-helix motif with score 1220.000, SD 3.34 at aa 364-385, sequence IGLADLARLAGLSEHATIAAFK
216591005922	PS00041 Bacterial regulatory proteins, araC family signature.
216591005923	Predicted helix-turn-helix motif with score 1220.000, SD 3.34 at aa 246-267, sequence KTLGSIAHALGCPTGALDNAIR
216591005924	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591005925	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
216591005926	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005927	HMMPfam hit to PF00534, Glycosyl transferases group, score 2.7e-24
216591005928	Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726
216591005929	Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands; Region: CE4_NodB_like_5s_6s; cd10918
216591005930	putative active site [active]
216591005931	putative metal binding site [ion binding]; other site
216591005932	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 5.4e-36
216591005933	Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT_2; cl17364
216591005934	13 probable transmembrane helices predicted for BCAL1149 by TMHMM2.0 at aa 29-46, 107-129, 136-155, 165-184, 196-218, 238-260, 267-289, 299-321, 328-347, 352-369, 382-404, 424-446 and 458-480
216591005935	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591005936	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591005937	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 9.5e-05
216591005938	Predicted helix-turn-helix motif with score 1716.000, SD 5.03 at aa 239-260, sequence LTLAEIAEAADCSIRSLSRAFS
216591005939	PS00041 Bacterial regulatory proteins, araC family signature.
216591005940	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 7.7e-08
216591005941	classical (c) SDRs; Region: SDR_c; cd05233
216591005942	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
216591005943	NAD(P) binding site [chemical binding]; other site
216591005944	active site
216591005945	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.4e-30
216591005946	Putative MetA-pathway of phenol degradation; Region: Phenol_MetA_deg; cl01768
216591005947	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
216591005948	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591005949	NAD(P) binding site [chemical binding]; other site
216591005950	catalytic residues [active]
216591005951	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.1e-223
216591005952	PS00070 Aldehyde dehydrogenases cysteine active site.
216591005953	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591005954	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591005955	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591005956	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591005957	trimer interface [polypeptide binding]; other site
216591005958	eyelet of channel; other site
216591005959	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
216591005960	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase, score 1.5e-26
216591005961	benzoate transport; Region: 2A0115; TIGR00895
216591005962	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591005963	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591005964	12 probable transmembrane helices predicted for BCAL1156 by TMHMM2.0 at aa 23-45, 60-82, 89-111, 115-137, 150-172, 176-198, 261-283, 293-315, 320-342, 352-374, 387-409 and 414-436
216591005965	HMMPfam hit to PF00083, Sugar (and other) transporter, score 2.8e-06
216591005966	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.3e-48
216591005967	PS00216 Sugar transport proteins signature 1.
216591005968	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591005969	hypothetical protein; Provisional; Region: PRK07236
216591005970	HMMPfam hit to PF01494, FAD binding domain, score 1.8e-05
216591005971	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
216591005972	active site
216591005973	Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntE; COG1021
216591005974	2,3-dihydroxybenzoate-AMP ligase; Region: 23DHB-AMP_lg; cd05920
216591005975	acyl-activating enzyme (AAE) consensus motif; other site
216591005976	active site
216591005977	AMP binding site [chemical binding]; other site
216591005978	substrate binding site [chemical binding]; other site
216591005979	HMMPfam hit to PF00501, AMP-binding enzyme, score 4.2e-68
216591005980	PS00455 Putative AMP-binding domain signature.
216591005981	N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins; Region: PcpA_N_like; cd08346
216591005982	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591005983	Zn binding site [ion binding]; other site
216591005984	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 5.2e-14
216591005985	PS00082 Extradiol ring-cleavage dioxygenases signature.
216591005986	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591005987	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591005988	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.6e-19
216591005989	Predicted helix-turn-helix motif with score 1917.000, SD 5.72 at aa 38-59, sequence TNINDIADAVGMTRTALYYYFP
216591005990	Transposase; Region: HTH_Tnp_1; pfam01527
216591005991	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591005992	HMMPfam hit to PF01527, Transposase, score 4.1e-08
216591005993	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
216591005994	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591005995	HMMPfam hit to PF05717, IS66 Orf2 like protein, score 5.2e-37
216591005996	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
216591005997	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591005998	putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; pfam13005
216591005999	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
216591006000	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
216591006001	HMMPfam hit to PF03050, Transposase IS66 family, score 1.6e-73
216591006002	Uncharacterized protein conserved in bacteria [Function unknown]; Region: VgrG; COG3501
216591006003	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591006004	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591006005	Putative type VI secretion system Rhs element Vgr; Region: T6SS_Vgr; pfam13296
216591006006	Uncharacterized protein conserved in bacteria (DUF2345); Region: DUF2345; pfam10106
216591006007	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 1.2e-17
216591006008	Bacterial SH3 domain; Region: SH3_3; cl17532
216591006009	PS00018 EF-hand calcium-binding domain.
216591006010	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006011	1 probable transmembrane helix predicted for BCAL1167 by TMHMM2.0 at aa 4-21
216591006012	PAAR motif; Region: PAAR_motif; pfam05488
216591006013	HMMPfam hit to PF05488, PAAR motif, score 1.4e-06
216591006014	HMMPfam hit to PF05488, PAAR motif, score 0.00033
216591006015	CDS is interrupted by IS element insertion after codon 66. Similar to Pseudomonas syringae pv. tomato hypothetical protein UniProt:Q88BG3 (EMBL:AE016853) (147 aa) fasta scores: E()=7.9e-09, 36.129% id in 155 aa
216591006016	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591006017	Transposase; Region: HTH_Tnp_1; pfam01527
216591006018	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591006019	duplicated insertion sequence target
216591006020	Uncharacterized conserved protein [Function unknown]; Region: COG1479
216591006021	Protein of unknown function DUF262; Region: DUF262; pfam03235
216591006022	Protein of unknown function DUF262; Region: DUF262; pfam03235
216591006023	Protein of unknown function (DUF1524); Region: DUF1524; pfam07510
216591006024	HMMPfam hit to PF03235, Protein of unknown function DUF262, score 3.7e-15
216591006025	HMMPfam hit to PF07510, Protein of unknown function (DUF1524), score 2.2e-10
216591006026	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
216591006027	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591006028	putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; pfam13005
216591006029	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
216591006030	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
216591006031	HMMPfam hit to PF03050, Transposase IS66 family, score 1.1e-99
216591006032	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591006033	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
216591006034	HMMPfam hit to PF05717, IS66 Orf2 like protein, score 3.2e-62
216591006035	Transposase; Region: HTH_Tnp_1; pfam01527
216591006036	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591006037	HMMPfam hit to PF01527, Transposase, score 1.2e-10
216591006038	Multidrug resistance efflux pump [Defense mechanisms]; Region: EmrA; COG1566
216591006039	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591006040	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591006041	HMMPfam hit to PF00529, HlyD family secretion protein, score 1.2e-17
216591006042	Predicted helix-turn-helix motif with score 1115.000, SD 2.98 at aa 105-126, sequence MRQSEAARRADLNAEVVSNEAR
216591006043	1 probable transmembrane helix predicted for BCAL1176 by TMHMM2.0 at aa 13-35
216591006044	Protein of unknown function (DUF1656); Region: DUF1656; pfam07869
216591006045	Fusaric acid resistance protein family; Region: FUSC; pfam04632
216591006046	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591006047	9 probable transmembrane helices predicted for BCAL1177 by TMHMM2.0 at aa 31-53, 78-100, 104-123, 130-147, 157-179, 396-418, 445-467, 474-493 and 525-547
216591006048	HMMPfam hit to PF04632, Fusaric acid resistance protein conserved re, score 7.3e-23
216591006049	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591006050	HMMPfam hit to PF02321, Outer membrane efflux protein, score 2.7e-35
216591006051	HMMPfam hit to PF02321, Outer membrane efflux protein, score 2.4e-22
216591006052	PS00036 bZIP transcription factors basic domain signature.
216591006053	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006054	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591006055	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006056	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591006057	putative effector binding pocket; other site
216591006058	dimerization interface [polypeptide binding]; other site
216591006059	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-46
216591006060	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.2e-18
216591006061	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006062	Predicted helix-turn-helix motif with score 1159.000, SD 3.13 at aa 22-43, sequence SSFIKAANLLNMSVGVASRHVA
216591006063	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006064	transcriptional activator TtdR; Provisional; Region: PRK09801
216591006065	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591006066	putative effector binding pocket; other site
216591006067	dimerization interface [polypeptide binding]; other site
216591006068	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.4e-40
216591006069	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.8e-13
216591006070	Predicted helix-turn-helix motif with score 1010.000, SD 2.63 at aa 17-38, sequence GGISAGAFALHSSPPVVSRRLA
216591006071	Glycerate kinase [Carbohydrate transport and metabolism]; Region: COG1929
216591006072	HMMPfam hit to PF02595, Glycerate kinase family, score 5.4e-60
216591006073	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591006074	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591006075	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591006076	PS00215 Mitochondrial energy transfer proteins signature.
216591006077	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.8e-15
216591006078	putative succinate semialdehyde dehydrogenase; Provisional; Region: PRK13968
216591006079	Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like; Region: ALDH_SSADH1_GabD1; cd07100
216591006080	NAD(P) binding site [chemical binding]; other site
216591006081	catalytic residues [active]
216591006082	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 3.7e-133
216591006083	Probable gene remnant. Similar to C-terminus of Arthrobacter nicotinovorans putative sugar ABC transporter SWALL:Q8GAL0 (EMBL:AJ507836) (392 aa) fasta scores: E(): 3e-16, 43.2% id in 125 aa
216591006084	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006085	choline dehydrogenase; Validated; Region: PRK02106
216591006086	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591006087	HMMPfam hit to PF00732, GMC oxidoreductase, score 2.7e-51
216591006088	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006089	PS00623 GMC oxidoreductases signature 1.
216591006090	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
216591006091	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
216591006092	HMMPfam hit to PF05199, GMC oxidoreductase, score 4.3e-38
216591006093	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
216591006094	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
216591006095	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Ros, score 5.7e-11
216591006096	HMMPfam hit to PF02894, Oxidoreductase family, C-terminal alph, score 0.2
216591006097	Protein of unknown function (DUF993); Region: DUF993; pfam06187
216591006098	HMMPfam hit to PF06187, Protein of unknown function (DUF993), score 7.4e-259
216591006099	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
216591006100	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 1.9e-26
216591006101	PS00215 Mitochondrial energy transfer proteins signature.
216591006102	Prokaryotic membrane lipoprotein lipid attachment site; Region: LPAM_1; pfam08139
216591006103	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006104	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591006105	10 probable transmembrane helices predicted for BCAL1191 by TMHMM2.0 at aa 45-67, 88-107, 147-169, 174-196, 206-228, 235-252, 257-276, 285-307, 322-344 and 357-376
216591006106	HMMPfam hit to PF01757, Acyltransferase family, score 1e-65
216591006107	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591006108	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591006109	non-specific DNA binding site [nucleotide binding]; other site
216591006110	salt bridge; other site
216591006111	sequence-specific DNA binding site [nucleotide binding]; other site
216591006112	HMMPfam hit to PF01381, Helix-turn-helix, score 2.4e-13
216591006113	Predicted helix-turn-helix motif with score 2054.000, SD 6.18 at aa 26-47, sequence LTQEKVAERLGIGLEAVSRMER
216591006114	1 probable transmembrane helix predicted for BCAL1194 by TMHMM2.0 at aa 18-40
216591006115	Methyltransferase domain; Region: Methyltransf_27; pfam13708
216591006116	3 probable transmembrane helices predicted for BCAL1196 by TMHMM2.0 at aa 5-27, 37-56 and 68-90
216591006117	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006118	YqaJ-like viral recombinase domain; Region: YqaJ; cl09232
216591006119	putative hydrolase; Provisional; Region: PRK11460
216591006120	phage/plasmid-like protein TIGR03299; Region: LGT_TIGR03299
216591006121	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006122	2 probable transmembrane helices predicted for BCAL1202 by TMHMM2.0 at aa 134-156 and 171-193
216591006123	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006124	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006125	DNA helicase IV / RNA helicase N terminal; Region: Nucleolin_N; pfam12462
216591006126	Part of AAA domain; Region: AAA_19; pfam13245
216591006127	Family description; Region: UvrD_C_2; pfam13538
216591006128	HMMPfam hit to PF00580, UvrD/REP helicase, score 3e-08
216591006129	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006130	oxidoreductase; Provisional; Region: PRK06128
216591006131	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591006132	NAD(P) binding site [chemical binding]; other site
216591006133	active site
216591006134	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.9e-26
216591006135	PS00061 Short-chain dehydrogenases/reductases family signature.
216591006136	NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604
216591006137	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
216591006138	NAD(P) binding site [chemical binding]; other site
216591006139	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.5e-25
216591006140	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.6e-15
216591006141	DoxX; Region: DoxX; pfam07681
216591006142	4 probable transmembrane helices predicted for BCAL1208 by TMHMM2.0 at aa 19-41, 56-78, 85-104 and 114-136
216591006143	HMMPfam hit to PF07681, DoxX, score 8e-30
216591006144	PS00962 Ribosomal protein S2 signature 1.
216591006145	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591006146	Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933
216591006147	FMN binding site [chemical binding]; other site
216591006148	active site
216591006149	substrate binding site [chemical binding]; other site
216591006150	catalytic residue [active]
216591006151	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 8.6e-85
216591006152	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591006153	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006154	LysR substrate binding domain; Region: LysR_substrate; pfam03466
216591006155	dimerization interface [polypeptide binding]; other site
216591006156	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.9e-22
216591006157	Predicted helix-turn-helix motif with score 997.000, SD 2.58 at aa 20-41, sequence GSFSGAARRLERAQSVVSYAIA
216591006158	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006159	HMMPfam hit to PF03466, LysR substrate binding domain, score 7e-24
216591006160	Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]; Region: COG1853
216591006161	2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal; Region: OxoDH_E1alpha_N; pfam12573
216591006162	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]; Region: AcoA; COG1071
216591006163	Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000
216591006164	tetramer interface [polypeptide binding]; other site
216591006165	TPP-binding site [chemical binding]; other site
216591006166	heterodimer interface [polypeptide binding]; other site
216591006167	phosphorylation loop region [posttranslational modification]
216591006168	HMMPfam hit to PF00676, Dehydrogenase E1 component, score 5.6e-135
216591006169	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022
216591006170	Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036
216591006171	alpha subunit interface [polypeptide binding]; other site
216591006172	TPP binding site [chemical binding]; other site
216591006173	heterodimer interface [polypeptide binding]; other site
216591006174	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
216591006175	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 3.6e-76
216591006176	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 2.7e-56
216591006177	branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed; Region: PRK11856
216591006178	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
216591006179	E3 interaction surface; other site
216591006180	lipoyl attachment site [posttranslational modification]; other site
216591006181	e3 binding domain; Region: E3_binding; pfam02817
216591006182	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
216591006183	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 1.2e-21
216591006184	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
216591006185	HMMPfam hit to PF02817, e3 binding domain, score 5.2e-12
216591006186	HMMPfam hit to PF00198, 2-oxoacid dehydrogenases acyltransferas, score 8.3e-113
216591006187	dihydrolipoamide dehydrogenase; Validated; Region: PRK05976
216591006188	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591006189	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591006190	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
216591006191	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 1.5e-52
216591006192	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.
216591006193	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006194	PS00435 Peroxidases proximal heme-ligand signature.
216591006195	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 1.1e-29
216591006196	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 2.1e-41
216591006197	CC3(TIP30)-like, atypical (a) SDRs; Region: CC3_like_SDR_a; cd05250
216591006198	NADH(P)-binding; Region: NAD_binding_10; pfam13460
216591006199	NAD binding site [chemical binding]; other site
216591006200	active site
216591006201	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591006202	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006203	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591006204	dimerization interface [polypeptide binding]; other site
216591006205	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.4e-20
216591006206	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 9.8e-17
216591006207	Agmatinase-like family includes proclavaminic acid amidinohydrolase; Region: Agmatinase_PAH; cd11592
216591006208	agmatinase; Region: agmatinase; TIGR01230
216591006209	oligomer interface [polypeptide binding]; other site
216591006210	putative active site [active]
216591006211	Mn binding site [ion binding]; other site
216591006212	HMMPfam hit to PF00491, Arginase family, score 5.4e-69
216591006213	PS00147 Arginase family signature 1.
216591006214	PS00148 Arginase family signature 2.
216591006215	PS01053 Arginase family signature 3.
216591006216	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
216591006217	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591006218	Coenzyme A binding pocket [chemical binding]; other site
216591006219	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 7.6e-10
216591006220	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006221	Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]; Region: CodB; COG1457
216591006222	Permease for cytosine/purines, uracil, thiamine, allantoin; Region: Transp_cyt_pur; pfam02133
216591006223	Na binding site [ion binding]; other site
216591006224	HMMPfam hit to PF02133, Permease for cytosine/purines, uracil,, score 4.7e-41
216591006225	13 probable transmembrane helices predicted for BCAL1220 by TMHMM2.0 at aa 34-56, 61-83, 98-120, 141-158, 163-185, 198-217, 237-259, 272-294, 299-318, 330-352, 357-379, 400-422 and 437-454
216591006226	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591006227	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591006228	trimer interface [polypeptide binding]; other site
216591006229	eyelet of channel; other site
216591006230	HMMPfam hit to PF00267, Gram-negative porin, score 5e-06
216591006231	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591006232	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006233	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591006234	dimerization interface [polypeptide binding]; other site
216591006235	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.5e-28
216591006236	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-22
216591006237	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006238	Predicted helix-turn-helix motif with score 1693.000, SD 4.95 at aa 28-49, sequence RSVSRAAARLHVTQPAVSQALR
216591006239	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591006240	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591006241	putative substrate translocation pore; other site
216591006242	HMMPfam hit to PF00083, Sugar (and other) transporter, score 7.5e-07
216591006243	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.6e-25
216591006244	12 probable transmembrane helices predicted for BCAL1223 by TMHMM2.0 at aa 19-41, 56-78, 87-109, 119-141, 153-175, 190-209, 238-260, 275-297, 304-323, 333-355, 368-390 and 395-417
216591006245	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591006246	allantoate amidohydrolase; Reviewed; Region: PRK12893
216591006247	M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884
216591006248	active site
216591006249	metal binding site [ion binding]; metal-binding site
216591006250	dimer interface [polypeptide binding]; other site
216591006251	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 1.4e-41
216591006252	Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123
216591006253	Histone deacetylase class IIa; Region: HDAC_classII_APAH; cd10001
216591006254	active site
216591006255	Zn binding site [ion binding]; other site
216591006256	HMMPfam hit to PF00850, Histone deacetylase domain, score 1.9e-58
216591006257	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591006258	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591006259	putative substrate translocation pore; other site
216591006260	12 probable transmembrane helices predicted for BCAL1226 by TMHMM2.0 at aa 13-35, 55-77, 84-103, 113-135, 142-164, 174-193, 214-236, 246-268, 281-300, 304-323, 336-358 and 363-385
216591006261	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.2e-41
216591006262	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591006263	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006264	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591006265	dimerization interface [polypeptide binding]; other site
216591006266	substrate binding pocket [chemical binding]; other site
216591006267	HMMPfam hit to PF03466, LysR substrate binding domain, score 4e-32
216591006268	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006269	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1e-19
216591006270	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006271	Predicted helix-turn-helix motif with score 1099.000, SD 2.93 at aa 19-40, sequence GSVMAGARAAGIVQPALSRQIR
216591006272	Pyridoxal-phosphate dependent enzyme; Region: PALP; pfam00291
216591006273	Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342
216591006274	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591006275	catalytic residue [active]
216591006276	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 6.8e-50
216591006277	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006278	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.
216591006279	Uncharacterized protein conserved in bacteria (DUF2242); Region: DUF2242; pfam10001
216591006280	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006281	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006282	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591006283	dimerization interface [polypeptide binding]; other site
216591006284	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.1e-09
216591006285	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.5e-09
216591006286	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006287	Predicted helix-turn-helix motif with score 1165.000, SD 3.15 at aa 4-25, sequence GGFARAAARLDMAVQTISAQVR
216591006288	Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]; Region: TerC; COG0861
216591006289	7 probable transmembrane helices predicted for BCAL1231 by TMHMM2.0 at aa 13-35, 54-76, 86-103, 123-145, 160-182, 189-208 and 218-237
216591006290	HMMPfam hit to PF03741, Integral membrane protein TerC family, score 1.9e-36
216591006291	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591006292	Transcription factor zinc-finger; Region: zf-TFIIB; cl01565
216591006293	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
216591006294	Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain  (ACD). sHsps are generally...; Region: ACD_sHsps-like; cd06464
216591006295	putative dimer interface [polypeptide binding]; other site
216591006296	HMMPfam hit to PF00011, Hsp20/alpha crystallin family, score 7.3e-18
216591006297	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
216591006298	Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain  (ACD). sHsps are generally...; Region: ACD_sHsps-like; cd06464
216591006299	putative dimer interface [polypeptide binding]; other site
216591006300	HMMPfam hit to PF00011, Hsp20/alpha crystallin family, score 2.3e-15
216591006301	3-hydroxybutyryl-CoA dehydrogenase; Validated; Region: PRK07066
216591006302	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
216591006303	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591006304	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, score 1.5e-65
216591006305	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 9.1e-07
216591006306	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591006307	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006308	LysR substrate binding domain; Region: LysR_substrate; pfam03466
216591006309	dimerization interface [polypeptide binding]; other site
216591006310	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.2e-28
216591006311	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.5e-21
216591006312	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006313	Predicted helix-turn-helix motif with score 2224.000, SD 6.76 at aa 19-40, sequence GSFTAASERVNLSQSTVSQHIR
216591006314	Malonate transporter MadL subunit; Region: MadL; cl04273
216591006315	HMMPfam hit to PF03817, Malonate transporter MadL subunit, score 3e-71
216591006316	4 probable transmembrane helices predicted for BCAL1238 by TMHMM2.0 at aa 7-29, 33-50, 63-80 and 90-112
216591006317	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006318	Malonate/sodium symporter MadM subunit; Region: MadM; cl04274
216591006319	HMMPfam hit to PF03818, Malonate/sodium symporter MadM subunit, score 6.3e-29
216591006320	8 probable transmembrane helices predicted for BCAL1239 by TMHMM2.0 at aa 5-27, 34-56, 71-93, 106-128, 132-154, 161-183, 193-215 and 222-244
216591006321	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006322	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006323	malonate decarboxylase, alpha subunit; Region: mdcA; TIGR01110
216591006324	Coenzyme A transferase; Region: CoA_trans; cl17247
216591006325	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006326	malonate decarboxylase subunit delta; Provisional; Region: PRK02103
216591006327	HMMPfam hit to PF06857, Malonate decarboxylase delta subunit (MdcD), score 9.6e-52
216591006328	malonate decarboxylase subunit beta; Reviewed; Region: PRK07189
216591006329	HMMPfam hit to PF01039, Carboxyl transferase domain, score 0.0035
216591006330	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006331	malonate decarboxylase, gamma subunit; Region: malonate_gamma; TIGR03134
216591006332	HMMPfam hit to PF06833, Malonate decarboxylase gamma subunit (MdcE), score 7.6e-85
216591006333	phosphoribosyl-dephospho-CoA transferase; Provisional; Region: PRK02098
216591006334	Phosphoribosyl-dephospho-CoA transferase MdcG; Region: MdcG; pfam10620
216591006335	triphosphoribosyl-dephospho-CoA synthase MdcB; Region: malonate_mdcB; TIGR03132
216591006336	HMMPfam hit to PF01874, ATP:dephospho-CoA triphosphoribosyl transfer, score 3.6e-56
216591006337	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
216591006338	malonate decarboxylase, epsilon subunit; Region: malonate_mdcH; TIGR03131
216591006339	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
216591006340	putative active site [active]
216591006341	catalytic site [active]
216591006342	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591006343	active site
216591006344	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 9.7e-07
216591006345	Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]; Region: DepA; COG4553
216591006346	PHB de-polymerase C-terminus; Region: PHB_depo_C; pfam06850
216591006347	HMMPfam hit to PF06850, PHB de-polymerase C-terminus, score 8.1e-39
216591006348	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006349	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591006350	Glutathione S-transferase, N-terminal domain; Region: GST_N_3; pfam13417
216591006351	C-terminal, alpha helical domain of the Glutathione S-transferase family; Region: GST_C_family; cl02776
216591006352	N-terminal domain interface [polypeptide binding]; other site
216591006353	dimer interface [polypeptide binding]; other site
216591006354	substrate binding pocket (H-site) [chemical binding]; other site
216591006355	phage conserved hypothetical protein BR0599; Region: phg_TIGR02218
216591006356	proline/glycine betaine transporter; Provisional; Region: PRK10642
216591006357	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591006358	putative substrate translocation pore; other site
216591006359	HMMPfam hit to PF00083, Sugar (and other) transporter, score 2e-43
216591006360	12 probable transmembrane helices predicted for BCAL1252 by TMHMM2.0 at aa 41-63, 78-100, 113-135, 145-167, 180-202, 212-234, 271-293, 308-330, 337-359, 369-391, 400-422 and 432-451
216591006361	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.3e-33
216591006362	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006363	PS00216 Sugar transport proteins signature 1.
216591006364	PS00217 Sugar transport proteins signature 2.
216591006365	hypothetical protein; Provisional; Region: PRK02237
216591006366	HMMPfam hit to PF02694, Uncharacterised BCR, YnfA/UPF0060 family, score 4.1e-43
216591006367	4 probable transmembrane helices predicted for BCAL1253 by TMHMM2.0 at aa 50-72, 77-99, 106-123 and 127-149
216591006368	DNA polymerase III, epsilon subunit, Proteobacterial; Region: dnaQ_proteo; TIGR01406
216591006369	DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131
216591006370	active site
216591006371	catalytic site [active]
216591006372	substrate binding site [chemical binding]; other site
216591006373	HMMPfam hit to PF00929, Exonuclease, score 3.6e-38
216591006374	RNase HI family found mainly in prokaryotes; Region: RNase_HI_prokaryote_like; cd09278
216591006375	RNA/DNA hybrid binding site [nucleotide binding]; other site
216591006376	active site
216591006377	HMMPfam hit to PF00075, RNase H, score 5e-58
216591006378	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591006379	HMMPfam hit to PF08241, Methyltransferase domain, score 5.2e-07
216591006380	Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446
216591006381	membrane-bound lytic murein transglycosylase D; Provisional; Region: mltD; PRK10783
216591006382	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591006383	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591006384	catalytic residue [active]
216591006385	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cl00107
216591006386	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
216591006387	HMMPfam hit to PF06474, MLTD_N, score 3.6e-17
216591006388	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006389	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 4.7e-27
216591006390	PS00922 Prokaryotic transglycosylases signature.
216591006391	HMMPfam hit to PF01476, LysM domain, score 0.00074
216591006392	HMMPfam hit to PF01476, LysM domain, score 5.4e-06
216591006393	Predicted helix-turn-helix motif with score 1282.000, SD 3.55 at aa 417-438, sequence QSMAALAGRYGVSVGQLKAWNR
216591006394	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591006395	D-galactonate transporter; Region: 2A0114; TIGR00893
216591006396	putative substrate translocation pore; other site
216591006397	11 probable transmembrane helices predicted for BCAL1259 by TMHMM2.0 at aa 28-50, 57-79, 94-116, 123-145, 155-177, 182-201, 267-289, 296-318, 328-350, 362-384 and 394-416
216591006398	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.8e-31
216591006399	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006400	carbamoyl phosphate synthase small subunit; Reviewed; Region: PRK12564
216591006401	Carbamoyl-phosphate synthase small chain, CPSase domain; Region: CPSase_sm_chain; smart01097
216591006402	Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; Region: GATase1_CPSase; cd01744
216591006403	catalytic site [active]
216591006404	subunit interface [polypeptide binding]; other site
216591006405	HMMPfam hit to PF00988, Carbamoyl-phosphate synthase small ch, score 1e-87
216591006406	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 9.8e-70
216591006407	PS00442 Glutamine amidotransferases class-I active site.
216591006408	leucine export protein LeuE; Provisional; Region: PRK10958
216591006409	6 probable transmembrane helices predicted for BCAL1261 by TMHMM2.0 at aa 13-35, 48-70, 74-96, 126-148, 159-181 and 194-216
216591006410	HMMPfam hit to PF01810, LysE type translocator, score 1.6e-55
216591006411	carbamoyl phosphate synthase large subunit; Reviewed; Region: carB; PRK05294
216591006412	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
216591006413	Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; pfam02786
216591006414	Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Region: CPSase_L_D3; pfam02787
216591006415	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
216591006416	ATP-grasp domain; Region: ATP-grasp_4; cl17255
216591006417	Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways...; Region: MGS_CPS_II; cd01424
216591006418	IMP binding site; other site
216591006419	dimer interface [polypeptide binding]; other site
216591006420	interdomain contacts; other site
216591006421	partial ornithine binding site; other site
216591006422	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 1.1e-59
216591006423	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006424	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 1.8e-129
216591006425	PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
216591006426	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591006427	HMMPfam hit to PF02787, Carbamoyl-phosphate synthetase large c, score 3.2e-60
216591006428	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 2.7e-25
216591006429	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 1.3e-19
216591006430	PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
216591006431	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591006432	HMMPfam hit to PF02142, MGS-like domain, score 6.6e-33
216591006433	transcription elongation factor GreA; Reviewed; Region: greA; PRK00226
216591006434	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
216591006435	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
216591006436	HMMPfam hit to PF03449, Prokaryotic transcription elongation fact, score 2.9e-39
216591006437	PS00829 Prokaryotic transcription elongation factors signature 1.
216591006438	HMMPfam hit to PF01272, Prokaryotic transcription elongation fact, score 3.8e-33
216591006439	PS00830 Prokaryotic transcription elongation factors signature 2.
216591006440	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006441	Domain of unknown function (DUF4149); Region: DUF4149; pfam13664
216591006442	4 probable transmembrane helices predicted for BCAL1264 by TMHMM2.0 at aa 5-27, 42-64, 77-99 and 123-145
216591006443	Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly; Region: CRS1_YhbY; smart01103
216591006444	HMMPfam hit to PF01985, CRS1 / YhbY domain, score 8.5e-32
216591006445	23S rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: FtsJ; COG0293
216591006446	FtsJ-like methyltransferase; Region: FtsJ; cl17430
216591006447	HMMPfam hit to PF01728, FtsJ-like methyltransferase, score 2.8e-60
216591006448	ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; Region: HflB; COG0465
216591006449	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591006450	Walker A motif; other site
216591006451	ATP binding site [chemical binding]; other site
216591006452	Walker B motif; other site
216591006453	arginine finger; other site
216591006454	Peptidase family M41; Region: Peptidase_M41; pfam01434
216591006455	2 probable transmembrane helices predicted for BCAL1267 by TMHMM2.0 at aa 5-23 and 100-122
216591006456	HMMPfam hit to PF06480, FtsH Extracellular, score 2.1e-36
216591006457	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006458	HMMPfam hit to PF00004, ATPase family associated with various c, score 1.9e-99
216591006459	HMMPfam hit to PF07728, ATPase family associated with various c, score 0.00068
216591006460	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006461	PS00674 AAA-protein family signature.
216591006462	HMMPfam hit to PF01434, Peptidase family M41, score 1.5e-104
216591006463	DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739
216591006464	dihydropteroate synthase; Region: DHPS; TIGR01496
216591006465	substrate binding pocket [chemical binding]; other site
216591006466	dimer interface [polypeptide binding]; other site
216591006467	inhibitor binding site; inhibition site
216591006468	PS00792 Dihydropteroate synthase signature 1.
216591006469	HMMPfam hit to PF00809, Pterin binding enzyme, score 3.3e-84
216591006470	PS00793 Dihydropteroate synthase signature 2.
216591006471	phosphoglucosamine mutase; Provisional; Region: glmM; PRK10887
216591006472	GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of...; Region: GlmM; cd05802
216591006473	active site
216591006474	substrate binding site [chemical binding]; other site
216591006475	metal binding site [ion binding]; metal-binding site
216591006476	HMMPfam hit to PF02878, Phosphoglucomutase/phosphomannomutase, al, score 8.1e-57
216591006477	PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature.
216591006478	HMMPfam hit to PF02879, Phosphoglucomutase/phosphomannomutase, al, score 3.5e-36
216591006479	HMMPfam hit to PF02880, Phosphoglucomutase/phosphomannomutase, al, score 4.2e-20
216591006480	HMMPfam hit to PF00408, Phosphoglucomutase/phosphomannomutase, C-, score 2e-09
216591006481	PBP superfamily domain; Region: PBP_like_2; cl17296
216591006482	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 4.6e-24
216591006483	1 probable transmembrane helix predicted for BCAL1270 by TMHMM2.0 at aa 7-29
216591006484	phosphate transporter permease subunit PstC; Provisional; Region: pstC; PRK11275
216591006485	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591006486	dimer interface [polypeptide binding]; other site
216591006487	conserved gate region; other site
216591006488	putative PBP binding loops; other site
216591006489	ABC-ATPase subunit interface; other site
216591006490	6 probable transmembrane helices predicted for BCAL1271 by TMHMM2.0 at aa 31-53, 87-109, 121-143, 175-197, 236-258 and 299-321
216591006491	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2e-14
216591006492	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591006493	phosphate transporter permease subunit PtsA; Provisional; Region: pstA; PRK11268
216591006494	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591006495	dimer interface [polypeptide binding]; other site
216591006496	conserved gate region; other site
216591006497	putative PBP binding loops; other site
216591006498	ABC-ATPase subunit interface; other site
216591006499	6 probable transmembrane helices predicted for BCAL1272 by TMHMM2.0 at aa 21-43, 74-96, 117-136, 141-159, 191-213 and 254-276
216591006500	PS00962 Ribosomal protein S2 signature 1.
216591006501	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 7.8e-29
216591006502	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591006503	phosphate transporter ATP-binding protein; Provisional; Region: pstB; PRK10744
216591006504	ATP-binding cassette domain of the phosphate transport system; Region: ABC_PstB_phosphate_transporter; cd03260
216591006505	Walker A/P-loop; other site
216591006506	ATP binding site [chemical binding]; other site
216591006507	Q-loop/lid; other site
216591006508	ABC transporter signature motif; other site
216591006509	Walker B; other site
216591006510	D-loop; other site
216591006511	H-loop/switch region; other site
216591006512	HMMPfam hit to PF00005, ABC transporter, score 5.4e-67
216591006513	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006514	PS00211 ABC transporters family signature.
216591006515	transcriptional regulator PhoU; Provisional; Region: PRK11115
216591006516	PhoU domain; Region: PhoU; pfam01895
216591006517	PhoU domain; Region: PhoU; pfam01895
216591006518	HMMPfam hit to PF01895, PhoU family, score 3.9e-26
216591006519	HMMPfam hit to PF01895, PhoU family, score 1.2e-23
216591006520	phosphate regulon transcriptional regulatory protein PhoB; Region: PhoB; TIGR02154
216591006521	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591006522	active site
216591006523	phosphorylation site [posttranslational modification]
216591006524	intermolecular recognition site; other site
216591006525	dimerization interface [polypeptide binding]; other site
216591006526	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591006527	DNA binding site [nucleotide binding]
216591006528	HMMPfam hit to PF00072, Response regulator receiver domain, score 5.9e-31
216591006529	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 3.5e-23
216591006530	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
216591006531	PAS domain; Region: PAS; smart00091
216591006532	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591006533	dimer interface [polypeptide binding]; other site
216591006534	phosphorylation site [posttranslational modification]
216591006535	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591006536	ATP binding site [chemical binding]; other site
216591006537	Mg2+ binding site [ion binding]; other site
216591006538	G-X-G motif; other site
216591006539	1 probable transmembrane helix predicted for BCAL1276 by TMHMM2.0 at aa 13-35
216591006540	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.8e-25
216591006541	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 5.6e-41
216591006542	polyphosphate kinase; Provisional; Region: PRK05443
216591006543	Polyphosphate kinase N-terminal domain; Region: PP_kinase_N; pfam13089
216591006544	Polyphosphate kinase middle domain; Region: PP_kinase; pfam02503
216591006545	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
216591006546	putative active site [active]
216591006547	catalytic site [active]
216591006548	Catalytic C-terminal domain, second repeat, of Pseudomonas aeruginosa polyphosphate kinase 1 and similar proteins; Region: PLDc_PaPPK1_C2_like; cd09168
216591006549	putative domain interface [polypeptide binding]; other site
216591006550	putative active site [active]
216591006551	catalytic site [active]
216591006552	HMMPfam hit to PF02503, Polyphosphate kinase, score 0
216591006553	Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]; Region: GppA; COG0248
216591006554	Ppx/GppA phosphatase family; Region: Ppx-GppA; pfam02541
216591006555	HMMPfam hit to PF02541, Ppx/GppA phosphatase family, score 1.6e-70
216591006556	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
216591006557	catalytic core [active]
216591006558	HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 3.8e-14
216591006559	Acetyltransferase (GNAT) domain; Region: Acetyltransf_5; cl17496
216591006560	PS00228 Tubulin-beta mRNA autoregulation signal.
216591006561	1 probable transmembrane helix predicted for BCAL1282 by TMHMM2.0 at aa 6-25
216591006562	DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_DinF_like; cd13136
216591006563	DNA-damage-inducible SOS response protein; Provisional; Region: PRK10367
216591006564	12 probable transmembrane helices predicted for BCAL1285 by TMHMM2.0 at aa 21-40, 55-77, 98-120, 147-164, 171-193, 198-220, 252-269, 284-306, 327-349, 364-386, 393-415 and 420-442
216591006565	HMMPfam hit to PF01554, MatE, score 2.5e-27
216591006566	Protein of unknown function (DUF2288); Region: DUF2288; pfam10052
216591006567	Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]; Region: Acs; COG0365
216591006568	Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS); Region: MACS_like_3; cd05971
216591006569	active site
216591006570	acyl-activating enzyme (AAE) consensus motif; other site
216591006571	putative CoA binding site [chemical binding]; other site
216591006572	AMP binding site [chemical binding]; other site
216591006573	HMMPfam hit to PF00501, AMP-binding enzyme, score 4e-106
216591006574	PS00455 Putative AMP-binding domain signature.
216591006575	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
216591006576	FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388
216591006577	Peptidase family M23; Region: Peptidase_M23; pfam01551
216591006578	HMMPfam hit to PF01551, Peptidase family M23, score 5e-47
216591006579	HMMPfam hit to PF01476, LysM domain, score 4.5e-16
216591006580	1 probable transmembrane helix predicted for BCAL1288 by TMHMM2.0 at aa 9-31
216591006581	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006582	aldose 1-epimerase superfamily; Region: Aldose_epim; cl14648
216591006583	active site
216591006584	catalytic residues [active]
216591006585	HMMPfam hit to PF01263, Aldose 1-epimerase, score 4.1e-10
216591006586	undecaprenyl pyrophosphate phosphatase; Reviewed; Region: PRK12554
216591006587	HMMPfam hit to PF02673, Bacitracin resistance protein BacA, score 3.4e-63
216591006588	7 probable transmembrane helices predicted for BCAL1290 by TMHMM2.0 at aa 7-29, 44-66, 87-108, 118-135, 156-178, 220-242 and 249-271
216591006589	BcenGI6
216591006590	Protein of unknown function (DUF3592); Region: DUF3592; pfam12158
216591006591	2 probable transmembrane helices predicted for BCAL1291 by TMHMM2.0 at aa 5-22 and 96-118
216591006592	2 probable transmembrane helices predicted for BCAL1292 by TMHMM2.0 at aa 135-157 and 167-189
216591006593	Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3519
216591006594	Bacterial protein of unknown function (DUF879); Region: DUF879; pfam05947
216591006595	HMMPfam hit to PF05947, Bacterial protein of unknown function (DUF87, score 2.2e-127
216591006596	type VI secretion system Vgr family protein; Region: VI_Rhs_Vgr; TIGR03361
216591006597	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591006598	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591006599	Gp5 C-terminal repeat (3 copies); Region: Gp5_C; pfam06715
216591006600	Gp5 C-terminal repeat (3 copies); Region: Gp5_C; pfam06715
216591006601	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 2.4e-53
216591006602	HMMPfam hit to PF06715, Gp5 C-terminal repeat (3 copies), score 0.00012
216591006603	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006604	Uncharacterized protein conserved in bacteria (DUF2169); Region: DUF2169; pfam09937
216591006605	Domain of unknown function (DUF4150); Region: DUF4150; pfam13665
216591006606	PS00120 Lipases, serine active site.
216591006607	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591006608	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
216591006609	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
216591006610	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
216591006611	HMMPfam hit to PF00023, Ankyrin repeat, score 0.48
216591006612	HMMPfam hit to PF00023, Ankyrin repeat, score 0.028
216591006613	HMMPfam hit to PF00023, Ankyrin repeat, score 0.02
216591006614	HNH/ENDO VII superfamily nuclease with conserved GHE residues; Region: GH-E; pfam14410
216591006615	PS00213 Lipocalin signature.
216591006616	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591006617	binding surface
216591006618	TPR motif; other site
216591006619	3 probable transmembrane helices predicted for BCAL1301 by TMHMM2.0 at aa 13-35, 135-157 and 177-199
216591006620	CDS is interrupted by an IS element insertion after codon 125. Similar to Xanthomonas campestris pv. campestris hypothetical protein xcc1451. UniProt:Q8PAM9 (EMBL:AE012245) (238 aa) fasta scores: E()=2.9e-23, 38.559% id in 236 aa
216591006621	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591006622	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591006623	transposase/IS protein; Provisional; Region: PRK09183
216591006624	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591006625	Walker A motif; other site
216591006626	ATP binding site [chemical binding]; other site
216591006627	Walker B motif; other site
216591006628	HMMPfam hit to PF01695, IstB-like ATP binding protein, score 9.6e-88
216591006629	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006630	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
216591006631	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
216591006632	DNA-binding interface [nucleotide binding]; DNA binding site
216591006633	Integrase core domain; Region: rve; pfam00665
216591006634	HMMPfam hit to PF00665, Integrase core domain, score 2.7e-25
216591006635	HMMPfam hit to PF02796, Helix-turn-helix domain of resolvase, score 0.0028
216591006636	Predicted helix-turn-helix motif with score 2020.000, SD 6.07 at aa 18-39, sequence VSEREIARRLGISRNTVARYLS
216591006637	CDS is interupted by at least two IS element insertion events after codons 492 and 696. Similar to Psychrobacter cryohalolentis (strain K5) SNF2-related protein UniProt:Q1QC66 (EMBL:CP000323) (1075 aa) fasta scores: E()=2e-102, 39.794% id in 1068 aa
216591006638	HMMPfam hit to PF00665, Integrase core domain, score 9.5e-40
216591006639	HMMPfam hit to PF01527, Transposase, score 3.6e-22
216591006640	Predicted helix-turn-helix motif with score 1325.000, SD 3.70 at aa 18-39, sequence TPVAEVCRKMGISDATFYNWRT
216591006641	HMMPfam hit to PF00176, SNF2 family N-terminal domain, score 3.7e-60
216591006642	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591006643	Transposase; Region: HTH_Tnp_1; pfam01527
216591006644	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591006645	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 7.9e-10
216591006646	Nuclease-related domain; Region: NERD; pfam08378
216591006647	Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]; Region: SPS1; COG0515
216591006648	Protein Kinases, catalytic domain; Region: PKc_like; cl09925
216591006649	activation loop (A-loop); other site
216591006650	Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]; Region: SPS1; COG0515
216591006651	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cd05120
216591006652	active site
216591006653	substrate binding site [chemical binding]; other site
216591006654	ATP binding site [chemical binding]; other site
216591006655	AAA domain; Region: AAA_11; pfam13086
216591006656	Part of AAA domain; Region: AAA_19; pfam13245
216591006657	Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]; Region: COG1112
216591006658	AAA domain; Region: AAA_12; pfam13087
216591006659	HMMPfam hit to PF08378, Nuclease-related domain, score 1.7e-07
216591006660	PS00108 Serine/Threonine protein kinases active-site signature.
216591006661	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006662	Domain of unknown function (DUF4102); Region: DUF4102; pfam13356
216591006663	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
216591006664	active site
216591006665	DNA binding site [nucleotide binding]
216591006666	Int/Topo IB signature motif; other site
216591006667	HMMPfam hit to PF00589, Phage integrase family, score 1.6e-06
216591006668	Nitrate and nitrite sensing; Region: NIT; pfam08376
216591006669	ANTAR domain; Region: ANTAR; pfam03861
216591006670	HMMPfam hit to PF08376, Nitrate and nitrite sensing, score 3.7e-51
216591006671	HMMPfam hit to PF03861, ANTAR domain, score 6.9e-14
216591006672	Formate/nitrite transporter; Region: Form_Nir_trans; pfam01226
216591006673	HMMPfam hit to PF01226, Formate/nitrite transporter, score 7.1e-22
216591006674	6 probable transmembrane helices predicted for BCAL1319 by TMHMM2.0 at aa 29-51, 66-88, 109-131, 182-204, 211-230 and 240-257
216591006675	Hemerythrin-like domain; Region: Hr-like; cd12108
216591006676	Fe binding site [ion binding]; other site
216591006677	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.0038
216591006678	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.033
216591006679	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
216591006680	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
216591006681	glutaminase active site [active]
216591006682	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
216591006683	dimer interface [polypeptide binding]; other site
216591006684	active site
216591006685	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
216591006686	dimer interface [polypeptide binding]; other site
216591006687	active site
216591006688	HMMPfam hit to PF01380, SIS domain, score 2.3e-22
216591006689	HMMPfam hit to PF01380, SIS domain, score 2.4e-29
216591006690	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 4.6e-37
216591006691	Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily; Region: CE4_u2; cd10926
216591006692	putative active site [active]
216591006693	1 probable transmembrane helix predicted for BCAL1323 by TMHMM2.0 at aa 13-35
216591006694	6 probable transmembrane helices predicted for BCAL1324 by TMHMM2.0 at aa 24-46, 89-111, 118-140, 155-177, 189-211 and 216-238
216591006695	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
216591006696	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006697	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591006698	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006699	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
216591006700	CESA_like is  the cellulose synthase superfamily; Region: CESA_like; cd06423
216591006701	DXD motif; other site
216591006702	4 probable transmembrane helices predicted for BCAL1327 by TMHMM2.0 at aa 41-63, 344-366, 381-403 and 416-438
216591006703	HMMPfam hit to PF00535, Glycosyl transferase family, score 4.1e-26
216591006704	UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]; Region: WecB; COG0381
216591006705	Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase  family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues; Region: GT1_UDP-GlcNAc_2-Epimerase; cd03786
216591006706	active site
216591006707	homodimer interface [polypeptide binding]; other site
216591006708	HMMPfam hit to PF02350, UDP-N-acetylglucosamine 2-epimerase, score 9.4e-164
216591006709	Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR5; cd08271
216591006710	NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604
216591006711	putative NAD(P) binding site [chemical binding]; other site
216591006712	substrate binding site [chemical binding]; other site
216591006713	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.5e-09
216591006714	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 9.1e-05
216591006715	4-hydroxybenzoyl-CoA reductase, gamma subunit; Region: 4hydroxCoAred; TIGR03193
216591006716	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591006717	catalytic loop [active]
216591006718	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cl00159
216591006719	iron binding site [ion binding]; other site
216591006720	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591006721	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 1.3e-10
216591006722	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591006723	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 1.8e-34
216591006724	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591006725	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591006726	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591006727	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591006728	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591006729	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 9.3e-10
216591006730	Predicted helix-turn-helix motif with score 1142.000, SD 3.08 at aa 395-416, sequence TTRDELAKALGLPAERVTVNVT
216591006731	aldolase II superfamily protein; Provisional; Region: PRK07044
216591006732	intersubunit interface [polypeptide binding]; other site
216591006733	active site
216591006734	Zn2+ binding site [ion binding]; other site
216591006735	HMMPfam hit to PF00596, Class II Aldolase and Adducin N-terminal, score 2.6e-68
216591006736	Acyl-CoA dehydrogenase N terminal; Region: AcylCoA_DH_N; pfam12418
216591006737	acyl-CoA dehydrogenase; Provisional; Region: PTZ00456
216591006738	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591006739	active site
216591006740	Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806
216591006741	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 2.6e-14
216591006742	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 5.4e-27
216591006743	PS00073 Acyl-CoA dehydrogenases signature 2.
216591006744	PS00216 Sugar transport proteins signature 1.
216591006745	NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604
216591006746	Quinone oxidoreductase (QOR); Region: QOR1; cd08241
216591006747	NAD(P) binding site [chemical binding]; other site
216591006748	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 2.6e-22
216591006749	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 1.3e-41
216591006750	Predicted transcriptional regulators [Transcription]; Region: COG1695
216591006751	Transcriptional regulator PadR-like family; Region: PadR; cl17335
216591006752	Virulence activator alpha C-term; Region: Vir_act_alpha_C; pfam10400
216591006753	HMMPfam hit to PF03551, Transcriptional regulator PadR-like family, score 3.4e-07
216591006754	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591006755	2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the...; Region: DCR_FMN; cd02930
216591006756	active site
216591006757	FMN binding site [chemical binding]; other site
216591006758	2,4-decadienoyl-CoA binding site; other site
216591006759	catalytic residue [active]
216591006760	4Fe-4S cluster binding site [ion binding]; other site
216591006761	Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]; Region: HcaD; COG0446
216591006762	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591006763	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 9.8e-110
216591006764	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoredu, score 8.8e-05
216591006765	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoredu, score 0.0011
216591006766	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591006767	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
216591006768	Uncharacterized protein family (UPF0227); Region: UPF0227; cl14886
216591006769	3-(3-hydroxyphenyl)propionate hydroxylase; Validated; Region: mhpA; PRK06183
216591006770	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591006771	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591006772	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591006773	HMMPfam hit to PF01494, FAD binding domain, score 1.9e-51
216591006774	Alcohol dehydrogenase, class IV [Energy production and conversion]; Region: EutG; COG1454
216591006775	Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes; Region: MAR; cd08177
216591006776	active site
216591006777	dimer interface [polypeptide binding]; other site
216591006778	metal binding site [ion binding]; metal-binding site
216591006779	HMMPfam hit to PF00465, Iron-containing alcohol dehydrogenase, score 1.3e-15
216591006780	Stress responsive A/B Barrel Domain; Region: Dabb; smart00886
216591006781	HMMPfam hit to PF07876, Stress responsive A/B Barrel Domain, score 6.8e-19
216591006782	Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form...; Region: 1,2-HQD; cd03461
216591006783	chlorocatechol 1,2-dioxygenase; Region: chlorocat_1_2; TIGR02465
216591006784	dimer interface [polypeptide binding]; other site
216591006785	active site
216591006786	HMMPfam hit to PF00775, Dioxygenase, score 1.5e-83
216591006787	PS00083 Intradiol ring-cleavage dioxygenases signature.
216591006788	HMMPfam hit to PF04444, Catechol dioxygenase N terminus, score 5.7e-30
216591006789	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006790	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591006791	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006792	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591006793	putative effector binding pocket; other site
216591006794	dimerization interface [polypeptide binding]; other site
216591006795	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.2e-19
216591006796	Predicted helix-turn-helix motif with score 1740.000, SD 5.11 at aa 17-38, sequence GSLSKAAERLGMSSAAASRCLN
216591006797	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006798	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.4e-52
216591006799	Putative MetA-pathway of phenol degradation; Region: Phenol_MetA_deg; cl01768
216591006800	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
216591006801	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591006802	N-terminal plug; other site
216591006803	ligand-binding site [chemical binding]; other site
216591006804	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 2.7e-24
216591006805	HMMPfam hit to PF00593, TonB dependent receptor, score 3.7e-19
216591006806	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
216591006807	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
216591006808	Walker A/P-loop; other site
216591006809	ATP binding site [chemical binding]; other site
216591006810	Q-loop/lid; other site
216591006811	ABC transporter signature motif; other site
216591006812	Walker B; other site
216591006813	D-loop; other site
216591006814	H-loop/switch region; other site
216591006815	HMMPfam hit to PF00005, ABC transporter, score 1.2e-52
216591006816	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006817	PS00211 ABC transporters family signature.
216591006818	Metal binding protein TroA_a.  These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and...; Region: TroA_a; cd01148
216591006819	proposed F420-0 ABC transporter, periplasmic F420-0 binding protein; Region: F420-O_ABCperi; TIGR03868
216591006820	putative ligand binding residues [chemical binding]; other site
216591006821	HMMPfam hit to PF01497, Periplasmic binding protein, score 1.2e-06
216591006822	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
216591006823	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
216591006824	ABC-ATPase subunit  interface; other site
216591006825	dimer interface [polypeptide binding]; other site
216591006826	putative PBP binding regions; other site
216591006827	10 probable transmembrane helices predicted for BCAL1348 by TMHMM2.0 at aa 12-34, 44-66, 78-100, 110-132, 134-156, 166-188, 195-217, 259-281, 294-316 and 326-343
216591006828	HMMPfam hit to PF01032, FecCD transport family, score 2.2e-64
216591006829	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006830	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591006831	dimerization interface [polypeptide binding]; other site
216591006832	His Kinase A (phospho-acceptor) domain; Region: HisKA; pfam00512
216591006833	dimer interface [polypeptide binding]; other site
216591006834	phosphorylation site [posttranslational modification]
216591006835	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591006836	ATP binding site [chemical binding]; other site
216591006837	Mg2+ binding site [ion binding]; other site
216591006838	G-X-G motif; other site
216591006839	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.9e-33
216591006840	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 2.8e-12
216591006841	HMMPfam hit to PF00672, HAMP domain, score 2.1e-11
216591006842	2 probable transmembrane helices predicted for BCAL1349 by TMHMM2.0 at aa 5-27 and 135-157
216591006843	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591006844	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591006845	active site
216591006846	phosphorylation site [posttranslational modification]
216591006847	intermolecular recognition site; other site
216591006848	dimerization interface [polypeptide binding]; other site
216591006849	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591006850	DNA binding site [nucleotide binding]
216591006851	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 4e-20
216591006852	HMMPfam hit to PF00072, Response regulator receiver domain, score 3e-33
216591006853	MltA-interacting protein MipA; Region: MipA; cl01504
216591006854	HMMPfam hit to PF06629, MltA-interacting protein MipA, score 9.5e-44
216591006855	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006856	3-oxoacyl-(acyl carrier protein) synthase; Validated; Region: PRK06147
216591006857	2 probable transmembrane helices predicted for BCAL1353 by TMHMM2.0 at aa 5-22 and 34-53
216591006858	PAAR motif; Region: PAAR_motif; pfam05488
216591006859	HMMPfam hit to PF05488, PAAR motif, score 0.075
216591006860	PS00430 TonB-dependent receptor proteins signature 1.
216591006861	HMMPfam hit to PF05488, PAAR motif, score 0.0017
216591006862	Uncharacterized protein conserved in bacteria [Function unknown]; Region: VgrG; COG3501
216591006863	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591006864	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591006865	Putative type VI secretion system Rhs element Vgr; Region: T6SS_Vgr; pfam13296
216591006866	Uncharacterized protein conserved in bacteria (DUF2345); Region: DUF2345; pfam10106
216591006867	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 5.7e-26
216591006868	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591006869	Domain of unknown function (DUF4123); Region: DUF4123; pfam13503
216591006870	Protein of unknown function (DUF3304); Region: DUF3304; pfam11745
216591006871	Uncharacterized conserved protein (DUF2235); Region: DUF2235; cl01480
216591006872	Uncharacterized conserved protein (DUF2235); Region: DUF2235; cl01480
216591006873	Uncharacterized protein conserved in bacteria [Function unknown]; Region: VgrG; COG3501
216591006874	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591006875	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591006876	Putative type VI secretion system Rhs element Vgr; Region: T6SS_Vgr; pfam13296
216591006877	Uncharacterized protein conserved in bacteria (DUF2345); Region: DUF2345; pfam10106
216591006878	Immune inhibitor A peptidase M6; Region: Peptidase_M6; cl11525
216591006879	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 1.2e-13
216591006880	Fibronectin type III-like domain; Region: Fn3-like; pfam14310
216591006881	type VI secretion system Vgr family protein; Region: VI_Rhs_Vgr; TIGR03361
216591006882	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591006883	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591006884	Putative type VI secretion system Rhs element Vgr; Region: T6SS_Vgr; pfam13296
216591006885	Uncharacterized protein conserved in bacteria (DUF2345); Region: DUF2345; cl01733
216591006886	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 3.5e-09
216591006887	Domain of unknown function (DUF4123); Region: DUF4123; pfam13503
216591006888	Protein of unknown function (DUF1365); Region: DUF1365; cl17838
216591006889	Protein of unknown function (DUF805); Region: DUF805; pfam05656
216591006890	HMMPfam hit to PF05656, Protein of unknown function (DUF805), score 3.4e-06
216591006891	2 probable transmembrane helices predicted for BCAL1364 by TMHMM2.0 at aa 24-46 and 59-81
216591006892	Protein of unknown function (DUF3304); Region: DUF3304; pfam11745
216591006893	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591006894	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006895	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006896	Uncharacterized conserved protein (DUF2235); Region: DUF2235; cl01480
216591006897	Uncharacterized conserved protein (DUF2235); Region: DUF2235; cl01480
216591006898	PS00559 Eukaryotic molybdopterin oxidoreductases signature.
216591006899	PS00904 Protein prenyltransferases alpha subunit repeat signature.
216591006900	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
216591006901	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591006902	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591006903	catalytic residue [active]
216591006904	VirB9/CagX/TrbG, a component of the type IV secretion system; Region: VirB9_CagX_TrbG; cd06911
216591006905	VirB7 interaction site; other site
216591006906	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 6.6e-26
216591006907	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006908	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591006909	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591006910	trimer interface [polypeptide binding]; other site
216591006911	eyelet of channel; other site
216591006912	HMMPfam hit to PF00267, Gram-negative porin, score 2.5e-06
216591006913	RNA polymerase sigma factor; Provisional; Region: PRK12528
216591006914	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591006915	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591006916	DNA binding residues [nucleotide binding]
216591006917	HMMPfam hit to PF04542, Sigma-70 region, score 2.3e-13
216591006918	HMMPfam hit to PF08281, Sigma-70, region, score 2.6e-16
216591006919	HMMPfam hit to PF04545, Sigma-70, region, score 2.2e-08
216591006920	Predicted helix-turn-helix motif with score 2086.000, SD 6.29 at aa 136-157, sequence LTQAEIARELGVSLATVKRYLV
216591006921	fec operon regulator FecR; Reviewed; Region: PRK09774
216591006922	FecR protein; Region: FecR; pfam04773
216591006923	HMMPfam hit to PF04773, FecR protein, score 6.7e-40
216591006924	Secretin and TonB N terminus short domain; Region: STN; smart00965
216591006925	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
216591006926	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591006927	N-terminal plug; other site
216591006928	ligand-binding site [chemical binding]; other site
216591006929	HMMPfam hit to PF07660, Secretin and TonB N terminus short domai, score 5.6e-09
216591006930	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 1.5e-17
216591006931	HMMPfam hit to PF00593, TonB dependent receptor, score 5.8e-29
216591006932	1 probable transmembrane helix predicted for BCAL1372 by TMHMM2.0 at aa 13-35
216591006933	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591006934	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006935	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_2; cd08427
216591006936	putative dimerization interface [polypeptide binding]; other site
216591006937	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.6e-39
216591006938	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.2e-17
216591006939	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006940	Predicted helix-turn-helix motif with score 1159.000, SD 3.13 at aa 15-36, sequence GTFAAAGNRIGLTQAAVSAQMQ
216591006941	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_18; cd08357
216591006942	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591006943	putative metal binding site [ion binding]; other site
216591006944	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 4.5e-08
216591006945	Flavin reductase like domain; Region: Flavin_Reduct; smart00903
216591006946	HMMPfam hit to PF01613, Flavin reductase like domain, score 2.9e-06
216591006947	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006948	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591006949	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591006950	TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440
216591006951	putative dimerization interface [polypeptide binding]; other site
216591006952	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.4e-51
216591006953	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3e-21
216591006954	PS00044 Bacterial regulatory proteins, lysR family signature.
216591006955	Predicted helix-turn-helix motif with score 1557.000, SD 4.49 at aa 18-39, sequence GNFTRAAARLHLSQPALTVQIR
216591006956	H+/citrate symporter [Energy production and conversion]; Region: CitM; COG2851
216591006957	Citrate transporter; Region: CitMHS; pfam03600
216591006958	HMMPfam hit to PF03606, C4-dicarboxylate anaerobic carrier, score 0.0023
216591006959	13 probable transmembrane helices predicted for BCAL1377 by TMHMM2.0 at aa 2-19, 23-45, 52-74, 104-126, 139-161, 176-195, 230-249, 253-270, 282-304, 314-336, 349-371, 386-405 and 412-431
216591006960	HMMPfam hit to PF03600, Citrate transporter, score 1.6e-96
216591006961	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591006962	Protein of unknown function (DUF1446); Region: DUF1446; pfam07287
216591006963	HMMPfam hit to PF07287, Protein of unknown function (DUF1446), score 4.4e-107
216591006964	PS00017 ATP/GTP-binding site motif A (P-loop).
216591006965	Predicted amidohydrolase [General function prediction only]; Region: COG0388
216591006966	Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases); Region: R-amidase_like; cd07576
216591006967	putative active site [active]
216591006968	catalytic triad [active]
216591006969	putative dimer interface [polypeptide binding]; other site
216591006970	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, score 1.6e-37
216591006971	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591006972	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591006973	DNA binding residues [nucleotide binding]
216591006974	dimerization interface [polypeptide binding]; other site
216591006975	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 1.8e-20
216591006976	PS00622 Bacterial regulatory proteins, luxR family signature.
216591006977	Predicted helix-turn-helix motif with score 1308.000, SD 3.64 at aa 219-240, sequence RSNKEVASKLDISAETVKVHRR
216591006978	1 probable transmembrane helix predicted for BCAL1382 by TMHMM2.0 at aa 13-35
216591006979	Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]; Region: COG4589
216591006980	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
216591006981	HMMPfam hit to PF01148, Cytidylyltransferase family, score 1.8e-72
216591006982	8 probable transmembrane helices predicted for BCAL1383 by TMHMM2.0 at aa 5-27, 50-72, 93-115, 119-136, 149-168, 178-200, 220-239 and 243-265
216591006983	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
216591006984	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
216591006985	putative acyl-acceptor binding pocket; other site
216591006986	HMMPfam hit to PF01553, Acyltransferase, score 3e-08
216591006987	Phosphatidylglycerophosphate synthase [Lipid metabolism]; Region: PgsA; COG0558
216591006988	4 probable transmembrane helices predicted for BCAL1385 by TMHMM2.0 at aa 43-65, 86-108, 118-140 and 153-175
216591006989	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 3.4e-06
216591006990	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
216591006991	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591006992	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591006993	S-adenosylmethionine binding site [chemical binding]; other site
216591006994	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 0.00016
216591006995	PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin; Region: PAP2_Aur1_like; cd03386
216591006996	active site
216591006997	8 probable transmembrane helices predicted for BCAL1387 by TMHMM2.0 at aa 26-48, 68-90, 103-121, 146-165, 170-192, 196-215, 258-280 and 295-317
216591006998	HMMPfam hit to PF00782, Dual specificity phosphatase, catalytic doma, score 2.9e-07
216591006999	3 probable transmembrane helices predicted for BCAL1388 by TMHMM2.0 at aa 21-40, 45-67 and 123-145
216591007000	cellulose synthase regulator protein; Provisional; Region: PRK11114
216591007001	2 probable transmembrane helices predicted for BCAL1389 by TMHMM2.0 at aa 26-48 and 767-789
216591007002	HMMPfam hit to PF03170, Bacterial cellulose synthase subunit, score 1.3e-131
216591007003	endo-1,4-D-glucanase; Provisional; Region: PRK11097
216591007004	HMMPfam hit to PF01270, Glycosyl hydrolases family, score 7.2e-57
216591007005	PS00812 Glycosyl hydrolases family 8 signature.
216591007006	Cellulose synthase operon protein C C-terminus (BCSC_C); Region: BCSC_C; pfam05420
216591007007	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.13
216591007008	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.23
216591007009	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.13
216591007010	HMMPfam hit to PF05420, Cellulose synthase operon protein C C-termin, score 3.2e-86
216591007011	cellulose biosynthesis protein BcsE; Region: cellulose_bcsE; TIGR03369
216591007012	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007013	1 probable transmembrane helix predicted for BCAL1393 by TMHMM2.0 at aa 5-27
216591007014	cellulose synthase operon protein YhjQ; Region: cellulose_yhjQ; TIGR03371
216591007015	cellulose synthase catalytic subunit (UDP-forming); Region: CelA; TIGR03030
216591007016	CESA_CelA_like are involved in the elongation of the glucan chain of cellulose; Region: CESA_CelA_like; cd06421
216591007017	DXD motif; other site
216591007018	PilZ domain; Region: PilZ; pfam07238
216591007019	9 probable transmembrane helices predicted for BCAL1395 by TMHMM2.0 at aa 148-165, 169-188, 195-213, 228-250, 526-548, 552-574, 586-608, 638-657 and 664-686
216591007020	HMMPfam hit to PF00535, Glycosyl transferase family, score 1.6e-23
216591007021	HMMPfam hit to PF07238, PilZ domain, score 2.2e-21
216591007022	Protein of unknown function (DUF3260); Region: DUF3260; cl11881
216591007023	cellulose synthase operon protein YhjU; Region: cellulose_yhjU; TIGR03368
216591007024	4 probable transmembrane helices predicted for BCAL1396 by TMHMM2.0 at aa 20-38, 45-62, 91-113 and 120-142
216591007025	PS01037 Bacterial extracellular solute-binding proteins, family 1 signature.
216591007026	Pirin-related protein [General function prediction only]; Region: COG1741
216591007027	Pirin; Region: Pirin; pfam02678
216591007028	Pirin C-terminal cupin domain; Region: Pirin_C; pfam05726
216591007029	HMMPfam hit to PF05726, Pirin C-terminal cupin domain, score 7.7e-24
216591007030	HMMPfam hit to PF02678, Pirin, score 6.7e-54
216591007031	Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]; Region: COG1765
216591007032	HMMPfam hit to PF02566, OsmC-like protein, score 6.6e-34
216591007033	NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]; Region: NhaP; COG0025
216591007034	10 probable transmembrane helices predicted for BCAL1400 by TMHMM2.0 at aa 7-29, 56-75, 82-104, 153-175, 182-204, 228-250, 270-292, 307-329, 350-372 and 382-404
216591007035	HMMPfam hit to PF00999, Sodium/hydrogen exchanger family, score 5.9e-51
216591007036	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007037	Protein of unknown function (DUF1427); Region: DUF1427; pfam07235
216591007038	HMMPfam hit to PF07235, Protein of unknown function (DUF1427), score 2.5e-39
216591007039	2 probable transmembrane helices predicted for BCAL1401 by TMHMM2.0 at aa 5-22 and 27-49
216591007040	YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them; Region: YcaC_related; cd01012
216591007041	Isochorismatase family; Region: Isochorismatase; pfam00857
216591007042	catalytic triad [active]
216591007043	dimer interface [polypeptide binding]; other site
216591007044	conserved cis-peptide bond; other site
216591007045	HMMPfam hit to PF00857, Isochorismatase family, score 1.4e-05
216591007046	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591007047	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591007048	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591007049	putative effector binding pocket; other site
216591007050	dimerization interface [polypeptide binding]; other site
216591007051	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.6e-47
216591007052	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3e-21
216591007053	PS00044 Bacterial regulatory proteins, lysR family signature.
216591007054	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fami, score 0.0035
216591007055	Predicted helix-turn-helix motif with score 2291.000, SD 6.99 at aa 20-41, sequence GSFAKAADLLGVSQPTVSKAIA
216591007056	Protein of unknown function (DUF1427); Region: DUF1427; pfam07235
216591007057	2 probable transmembrane helices predicted for BCAL1403A by TMHMM2.0 at aa 4-23 and 30-52
216591007058	Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]; Region: COG1574
216591007059	YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling; Region: YtcJ_like; cd01300
216591007060	active site
216591007061	HMMPfam hit to PF07969, Amidohydrolase family, score 2.3e-148
216591007062	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007063	Predicted membrane protein [Function unknown]; Region: COG2259
216591007064	4 probable transmembrane helices predicted for BCAL1405 by TMHMM2.0 at aa 20-42, 62-84, 86-105 and 115-137
216591007065	HMMPfam hit to PF07681, DoxX, score 4.7e-17
216591007066	1 probable transmembrane helix predicted for BCAL1406 by TMHMM2.0 at aa 7-25
216591007067	Protein of unknown function (DUF1275); Region: DUF1275; pfam06912
216591007068	HMMPfam hit to PF06912, Protein of unknown function (DUF1275), score 2.2e-28
216591007069	5 probable transmembrane helices predicted for BCAL1407 by TMHMM2.0 at aa 7-29, 39-61, 74-96, 170-188 and 193-215
216591007070	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007071	Domain of unknown function (DUF4104); Region: DUF4104; pfam13372
216591007072	Phospholipase C [Cell envelope biogenesis, outer membrane]; Region: PlcC; COG3511
216591007073	acid phosphatase, Burkholderia-type; Region: acid_phos_Burk; TIGR03397
216591007074	HMMPfam hit to PF04185, Phosphoesterase family, score 6e-164
216591007075	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
216591007076	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007077	Di-haem cytochrome c peroxidase; Region: CCP_MauG; pfam03150
216591007078	1 probable transmembrane helix predicted for BCAL1410 by TMHMM2.0 at aa 17-39
216591007079	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007080	HMMPfam hit to PF03150, Di-haem cytochrome c peroxidase, score 2.4e-20
216591007081	PS00190 Cytochrome c family heme-binding site signature.
216591007082	PS00190 Cytochrome c family heme-binding site signature.
216591007083	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cd02883
216591007084	nudix motif; other site
216591007085	HMMPfam hit to PF00293, NUDIX domain, score 3.5e-18
216591007086	PS00893 mutT domain signature.
216591007087	glutaminyl-tRNA synthetase; Provisional; Region: PRK05347
216591007088	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
216591007089	active site
216591007090	HIGH motif; other site
216591007091	nucleotide binding site [chemical binding]; other site
216591007092	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
216591007093	active site
216591007094	KMSKS motif; other site
216591007095	tRNA synthetases class I (E and Q), anti-codon binding domain; Region: tRNA-synt_1c_C; pfam03950
216591007096	HMMPfam hit to PF03950, tRNA synthetases class I (E and Q), an, score 1.8e-71
216591007097	HMMPfam hit to PF00749, tRNA synthetases class I (E and Q), ca, score 1.3e-134
216591007098	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591007099	2 probable transmembrane helices predicted for BCAL1413A by TMHMM2.0 at aa 7-29 and 44-66
216591007100	Serine hydrolase; Region: Ser_hydrolase; pfam06821
216591007101	HMMPfam hit to PF06821, Alpha/Beta hydrolase family of unknown funct, score 6.1e-62
216591007102	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591007103	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591007104	HMMPfam hit to PF02515, CoA-transferase family III, score 9.3e-84
216591007105	alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252
216591007106	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: AlaRS_core; cd00673
216591007107	motif 1; other site
216591007108	active site
216591007109	motif 2; other site
216591007110	motif 3; other site
216591007111	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
216591007112	DHHA1 domain; Region: DHHA1; pfam02272
216591007113	HMMPfam hit to PF01411, tRNA synthetases class II (A), score 0
216591007114	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591007115	HMMPfam hit to PF07973, Threonyl and Alanyl tRNA synthetase seco, score 3.3e-18
216591007116	PS00087 Copper/Zinc superoxide dismutase signature 1.
216591007117	HMMPfam hit to PF02272, DHHA1 domain, score 1.7e-19
216591007118	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591007119	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591007120	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591007121	dimerization interface [polypeptide binding]; other site
216591007122	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.7e-50
216591007123	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-19
216591007124	PS00044 Bacterial regulatory proteins, lysR family signature.
216591007125	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591007126	putative substrate translocation pore; other site
216591007127	12 probable transmembrane helices predicted for BCAL1418 by TMHMM2.0 at aa 26-45, 65-87, 94-112, 116-138, 150-172, 176-198, 241-263, 278-297, 304-323, 328-347, 360-382 and 392-414
216591007128	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.7e-10
216591007129	HMMPfam hit to PF06779, Protein of unknown function (DUF1228), score 8.3e-27
216591007130	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007131	NADH pyrophosphatase zinc ribbon domain; Region: zf-NADH-PPase; pfam09297
216591007132	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
216591007133	nudix motif; other site
216591007134	HMMPfam hit to PF00293, NUDIX domain, score 2.1e-17
216591007135	PS00893 mutT domain signature.
216591007136	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
216591007137	active site
216591007138	1 probable transmembrane helix predicted for BCAL1420 by TMHMM2.0 at aa 7-26
216591007139	HMMPfam hit to PF03061, Thioesterase superfamily, score 2.3e-15
216591007140	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591007141	TM-ABC transporter signature motif; other site
216591007142	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 6e-10
216591007143	7 probable transmembrane helices predicted for BCAL1421 by TMHMM2.0 at aa 9-31, 51-73, 94-116, 142-159, 191-213, 223-245 and 276-298
216591007144	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007145	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591007146	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
216591007147	TM-ABC transporter signature motif; other site
216591007148	9 probable transmembrane helices predicted for BCAL1422 by TMHMM2.0 at aa 15-37, 44-66, 86-108, 115-137, 157-179, 251-273, 288-310, 330-352 and 372-394
216591007149	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.6e-19
216591007150	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
216591007151	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591007152	Walker A/P-loop; other site
216591007153	ATP binding site [chemical binding]; other site
216591007154	Q-loop/lid; other site
216591007155	ABC transporter signature motif; other site
216591007156	Walker B; other site
216591007157	D-loop; other site
216591007158	H-loop/switch region; other site
216591007159	HMMPfam hit to PF00005, ABC transporter, score 2.2e-43
216591007160	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007161	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
216591007162	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591007163	Walker A/P-loop; other site
216591007164	ATP binding site [chemical binding]; other site
216591007165	Q-loop/lid; other site
216591007166	ABC transporter signature motif; other site
216591007167	Walker B; other site
216591007168	D-loop; other site
216591007169	H-loop/switch region; other site
216591007170	HMMPfam hit to PF00005, ABC transporter, score 4.5e-42
216591007171	PS00211 ABC transporters family signature.
216591007172	3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK07231
216591007173	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591007174	NAD(P) binding site [chemical binding]; other site
216591007175	active site
216591007176	HMMPfam hit to PF00106, short chain dehydrogenase, score 9e-31
216591007177	PS00061 Short-chain dehydrogenases/reductases family signature.
216591007178	hypothetical protein; Provisional; Region: PRK02487
216591007179	HMMPfam hit to PF03928, Domain of unknown function (DUF336), score 1.2e-21
216591007180	Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]; Region: IolB; COG3718
216591007181	HMMPfam hit to PF06845, Myo-inositol catabolism protein IolB, score 4e-170
216591007182	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
216591007183	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 2.1e-43
216591007184	Acetolactate synthase [Amino acid transport and metabolism]; Region: COG3962
216591007185	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591007186	dimer interface [polypeptide binding]; other site
216591007187	PYR/PP interface [polypeptide binding]; other site
216591007188	TPP binding site [chemical binding]; other site
216591007189	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591007190	Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629
216591007191	TPP-binding site [chemical binding]; other site
216591007192	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 9.4e-42
216591007193	PS00187 Thiamine pyrophosphate enzymes signature.
216591007194	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 3.1e-34
216591007195	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 1.9e-06
216591007196	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591007197	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
216591007198	substrate binding site [chemical binding]; other site
216591007199	ATP binding site [chemical binding]; other site
216591007200	Uncharacterized protein conserved in bacteria (DUF2090); Region: DUF2090; pfam09863
216591007201	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3892
216591007202	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591007203	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 3.8e-42
216591007204	PS00584 pfkB family of carbohydrate kinases signature 2.
216591007205	Periplasmic binding proteins specific to rhizopines; Region: PBP1_rhizopine_binding_like; cd06301
216591007206	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591007207	putative ligand binding site [chemical binding]; other site
216591007208	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 3.4e-07
216591007209	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
216591007210	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591007211	Walker A/P-loop; other site
216591007212	ATP binding site [chemical binding]; other site
216591007213	Q-loop/lid; other site
216591007214	ABC transporter signature motif; other site
216591007215	Walker B; other site
216591007216	D-loop; other site
216591007217	H-loop/switch region; other site
216591007218	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591007219	HMMPfam hit to PF00005, ABC transporter, score 2.4e-48
216591007220	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007221	HMMPfam hit to PF00005, ABC transporter, score 3.5e-24
216591007222	PS00211 ABC transporters family signature.
216591007223	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591007224	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591007225	TM-ABC transporter signature motif; other site
216591007226	8 probable transmembrane helices predicted for BCAL1433 by TMHMM2.0 at aa 26-48, 58-80, 87-106, 121-143, 150-168, 183-205, 236-258 and 290-312
216591007227	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 8.9e-63
216591007228	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
216591007229	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 1.3e-42
216591007230	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
216591007231	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
216591007232	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
216591007233	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007234	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Ros, score 2.1e-31
216591007235	HMMPfam hit to PF02894, Oxidoreductase family, C-terminal alph, score 2.4e-13
216591007236	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
216591007237	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 1.5e-41
216591007238	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
216591007239	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
216591007240	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
216591007241	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Ros, score 2.2e-39
216591007242	HMMPfam hit to PF02894, Oxidoreductase family, C-terminal alph, score 5.2e-10
216591007243	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
216591007244	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591007245	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
216591007246	putative active site [active]
216591007247	HMMPfam hit to PF01418, Helix-turn-helix domain, rpiR family, score 3.7e-05
216591007248	Predicted helix-turn-helix motif with score 1166.000, SD 3.16 at aa 71-92, sequence EGIQSLAEACGVQPSAVVRFAK
216591007249	HMMPfam hit to PF01380, SIS domain, score 1.3e-22
216591007250	Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085
216591007251	methylmalonic acid semialdehyde dehydrogenase; Region: MMSDH; TIGR01722
216591007252	tetrameric interface [polypeptide binding]; other site
216591007253	NAD binding site [chemical binding]; other site
216591007254	catalytic residues [active]
216591007255	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 7.6e-174
216591007256	PS00070 Aldehyde dehydrogenases cysteine active site.
216591007257	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591007258	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591007259	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591007260	putative effector binding pocket; other site
216591007261	dimerization interface [polypeptide binding]; other site
216591007262	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.5e-17
216591007263	Predicted helix-turn-helix motif with score 1686.000, SD 4.93 at aa 23-44, sequence GSFTAAAQRLGISKAAMSQRIA
216591007264	PS00044 Bacterial regulatory proteins, lysR family signature.
216591007265	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.5e-44
216591007266	SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain.  SirA (also known as UvrY,  and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this...; Region: SirA_YedF_YeeD; cd00291
216591007267	CPxP  motif; other site
216591007268	HMMPfam hit to PF01206, SirA-like protein, score 1.3e-19
216591007269	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591007270	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591007271	active site
216591007272	phosphorylation site [posttranslational modification]
216591007273	intermolecular recognition site; other site
216591007274	dimerization interface [polypeptide binding]; other site
216591007275	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591007276	DNA binding site [nucleotide binding]
216591007277	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.5e-26
216591007278	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1.5e-16
216591007279	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4254
216591007280	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
216591007281	FecR protein; Region: FecR; pfam04773
216591007282	HMMPfam hit to PF01476, LysM domain, score 1.9e-06
216591007283	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591007284	Predicted transmembrane sensor domain [Signal transduction mechanisms]; Region: COG4252
216591007285	CHASE2 domain; Region: CHASE2; pfam05226
216591007286	PAS domain; Region: PAS_9; pfam13426
216591007287	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591007288	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591007289	dimer interface [polypeptide binding]; other site
216591007290	phosphorylation site [posttranslational modification]
216591007291	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591007292	ATP binding site [chemical binding]; other site
216591007293	Mg2+ binding site [ion binding]; other site
216591007294	G-X-G motif; other site
216591007295	4 probable transmembrane helices predicted for BCAL1445 by TMHMM2.0 at aa 20-42, 307-326, 330-352 and 357-376
216591007296	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007297	HMMPfam hit to PF05226, CHASE2 domain, score 7.6e-50
216591007298	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 0.00057
216591007299	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 3.6e-33
216591007300	Domain of unknown function (DUF4136); Region: DUF4136; pfam13590
216591007301	1 probable transmembrane helix predicted for BCAL1446 by TMHMM2.0 at aa 7-29
216591007302	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007303	Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541
216591007304	dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]; Region: RfbA; COG1209
216591007305	active site
216591007306	tetramer interface; other site
216591007307	HMMPfam hit to PF00483, Nucleotidyl transferase, score 4.3e-17
216591007308	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
216591007309	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
216591007310	HIGH motif; other site
216591007311	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
216591007312	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
216591007313	active site
216591007314	KMSKS motif; other site
216591007315	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
216591007316	tRNA binding surface [nucleotide binding]; other site
216591007317	anticodon binding site; other site
216591007318	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
216591007319	HMMPfam hit to PF08264, Anticodon-binding domain, score 1.6e-54
216591007320	HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 0
216591007321	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007322	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591007323	DNA-dependent helicase II; Provisional; Region: uvrD; PRK11773
216591007324	Part of AAA domain; Region: AAA_19; pfam13245
216591007325	Family description; Region: UvrD_C_2; pfam13538
216591007326	HMMPfam hit to PF00580, UvrD/REP helicase, score 1.5e-189
216591007327	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007328	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated; Region: PRK05584
216591007329	HMMPfam hit to PF01048, Phosphorylase family, score 1.8e-33
216591007330	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591007331	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591007332	putative substrate translocation pore; other site
216591007333	11 probable transmembrane helices predicted for BCAL1451 by TMHMM2.0 at aa 29-51, 58-80, 100-134, 155-177, 182-204, 225-247, 267-289, 296-318, 322-343, 350-372 and 382-404
216591007334	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.7e-43
216591007335	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007336	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
216591007337	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591007338	dimer interface [polypeptide binding]; other site
216591007339	putative CheW interface [polypeptide binding]; other site
216591007340	2 probable transmembrane helices predicted for BCAL1452 by TMHMM2.0 at aa 4-21 and 180-202
216591007341	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 6e-93
216591007342	p-hydroxybenzoic acid efflux subunit AaeA; Provisional; Region: PRK10559
216591007343	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591007344	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591007345	HMMPfam hit to PF00529, HlyD family secretion protein, score 1.9e-25
216591007346	1 probable transmembrane helix predicted for BCAL1453 by TMHMM2.0 at aa 7-29
216591007347	Protein of unknown function (DUF1656); Region: DUF1656; pfam07869
216591007348	2 probable transmembrane helices predicted for BCAL1454 by TMHMM2.0 at aa 7-29 and 44-66
216591007349	HMMPfam hit to PF07869, Protein of unknown function (DUF1656), score 1.8e-21
216591007350	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591007351	Fusaric acid resistance protein family; Region: FUSC; pfam04632
216591007352	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591007353	10 probable transmembrane helices predicted for BCAL1455 by TMHMM2.0 at aa 31-53, 80-102, 107-124, 131-148, 163-182, 393-415, 445-467, 474-493, 498-520 and 532-554
216591007354	HMMPfam hit to PF04632, Fusaric acid resistance protein conserved re, score 1.4e-52
216591007355	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591007356	HMMPfam hit to PF02321, Outer membrane efflux protein, score 4.6e-37
216591007357	PS00216 Sugar transport proteins signature 1.
216591007358	HMMPfam hit to PF02321, Outer membrane efflux protein, score 2.2e-29
216591007359	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007360	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591007361	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591007362	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591007363	putative effector binding pocket; other site
216591007364	dimerization interface [polypeptide binding]; other site
216591007365	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.9e-18
216591007366	Predicted helix-turn-helix motif with score 1117.000, SD 2.99 at aa 17-38, sequence GSFTAAAQQMNSTTAYASRAVS
216591007367	HMMPfam hit to PF03466, LysR substrate binding domain, score 1e-49
216591007368	1 probable transmembrane helix predicted for BCAL1458 by TMHMM2.0 at aa 4-26
216591007369	Predicted phosphohydrolases [General function prediction only]; Region: Icc; COG1409
216591007370	Microscilla MS158 and related proteins, metallophosphatase domain; Region: MPP_MS158; cd07404
216591007371	putative active site [active]
216591007372	putative metal binding site [ion binding]; other site
216591007373	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 1.1e-15
216591007374	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007375	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
216591007376	FAD binding domain; Region: FAD_binding_4; pfam01565
216591007377	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 1.8e-66
216591007378	HMMPfam hit to PF01565, FAD binding domain, score 1.8e-40
216591007379	Predicted membrane protein (DUF2069); Region: DUF2069; pfam09842
216591007380	3 probable transmembrane helices predicted for BCAL1461 by TMHMM2.0 at aa 15-37, 66-85 and 95-117
216591007381	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
216591007382	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591007383	HMMPfam hit to PF00258, Flavodoxin, score 0.00043
216591007384	PS00201 Flavodoxin signature.
216591007385	Virulence factor BrkB; Region: Virul_fac_BrkB; cl07918
216591007386	HMMPfam hit to PF03631, Ribonuclease BN-like family, score 1e-54
216591007387	5 probable transmembrane helices predicted for BCAL1463 by TMHMM2.0 at aa 27-49, 99-121, 134-156, 176-198 and 238-260
216591007388	Protein of unknown function (DUF962); Region: DUF962; cl01879
216591007389	2 probable transmembrane helices predicted for BCAL1464 by TMHMM2.0 at aa 31-48 and 52-74
216591007390	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007391	FOG: CBS domain [General function prediction only]; Region: COG0517
216591007392	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
216591007393	HMMPfam hit to PF00571, CBS domain pair, score 1.3e-25
216591007394	H+ Antiporter protein; Region: 2A0121; TIGR00900
216591007395	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
216591007396	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
216591007397	putative acyl-acceptor binding pocket; other site
216591007398	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.6e-15
216591007399	8 probable transmembrane helices predicted for BCAL1466 by TMHMM2.0 at aa 71-93, 108-130, 246-268, 281-300, 313-335, 355-377, 389-411 and 431-453
216591007400	HMMPfam hit to PF01553, Acyltransferase, score 3.3e-28
216591007401	Chorismate synthase [Amino acid transport and metabolism]; Region: AroC; COG0082
216591007402	Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304
216591007403	Tetramer interface [polypeptide binding]; other site
216591007404	active site
216591007405	FMN-binding site [chemical binding]; other site
216591007406	HMMPfam hit to PF01264, Chorismate synthase, score 8.4e-195
216591007407	PS00787 Chorismate synthase signature 1.
216591007408	PS00789 Chorismate synthase signature 3.
216591007409	Dehydrogenases (flavoproteins) [Energy production and conversion]; Region: FixC; COG0644
216591007410	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591007411	Electron transfer flavoprotein-ubiquinone oxidoreductase; Region: ETF_QO; pfam05187
216591007412	Ferredoxin-like protein [Energy production and conversion]; Region: FixX; COG2440
216591007413	HMMPfam hit to PF05187, Electron transfer flavoprotein-ubiquinone ox, score 6.5e-116
216591007414	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00011
216591007415	short chain dehydrogenase; Provisional; Region: PRK06949
216591007416	classical (c) SDRs; Region: SDR_c; cd05233
216591007417	NAD(P) binding site [chemical binding]; other site
216591007418	active site
216591007419	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.7e-34
216591007420	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0028
216591007421	PS00061 Short-chain dehydrogenases/reductases family signature.
216591007422	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
216591007423	active site
216591007424	HMMPfam hit to PF03061, Thioesterase superfamily, score 4.8e-10
216591007425	PAS domain; Region: PAS_9; pfam13426
216591007426	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591007427	putative active site [active]
216591007428	heme pocket [chemical binding]; other site
216591007429	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591007430	DNA binding residues [nucleotide binding]
216591007431	dimerization interface [polypeptide binding]; other site
216591007432	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 4.3e-18
216591007433	PS00622 Bacterial regulatory proteins, luxR family signature.
216591007434	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007435	HMMPfam hit to PF08448, PAS fold, score 1.9e-06
216591007436	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]; Region: AtoD; COG1788
216591007437	HMMPfam hit to PF01144, Coenzyme A transferase, score 4.2e-105
216591007438	PS01273 CoA transferases signature 1.
216591007439	3-oxoacid CoA-transferase, B subunit; Region: pcaJ_scoB_fam; TIGR02428
216591007440	HMMPfam hit to PF01144, Coenzyme A transferase, score 7e-56
216591007441	PS01274 CoA transferases signature 2.
216591007442	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591007443	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: FabG; COG1028
216591007444	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591007445	NAD(P) binding site [chemical binding]; other site
216591007446	active site
216591007447	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 3.5e-05
216591007448	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.3e-08
216591007449	Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily; Region: CE4_SF; cl15692
216591007450	putative urate catabolism protein; Region: uraD_N-term-dom; TIGR03212
216591007451	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 2.8e-18
216591007452	SnoaL-like polyketide cyclase; Region: SnoaL; pfam07366
216591007453	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 5.3e-52
216591007454	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007455	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591007456	transcriptional activator TtdR; Provisional; Region: PRK09801
216591007457	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591007458	putative effector binding pocket; other site
216591007459	dimerization interface [polypeptide binding]; other site
216591007460	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.5e-12
216591007461	Predicted helix-turn-helix motif with score 1370.000, SD 3.85 at aa 20-41, sequence GSLSAAARELDLSLSVVSKRLT
216591007462	PS00044 Bacterial regulatory proteins, lysR family signature.
216591007463	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.4e-53
216591007464	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591007465	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591007466	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 5.1e-05
216591007467	This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150
216591007468	homotrimer interaction site [polypeptide binding]; other site
216591007469	putative active site [active]
216591007470	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 4.8e-24
216591007471	PS01094 Uncharacterized protein family UPF0076 signature.
216591007472	Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317
216591007473	HD domain; Region: HD_4; pfam13328
216591007474	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
216591007475	synthetase active site [active]
216591007476	NTP binding site [chemical binding]; other site
216591007477	metal binding site [ion binding]; metal-binding site
216591007478	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
216591007479	ACT  domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876
216591007480	HMMPfam hit to PF04607, Region found in RelA / SpoT proteins, score 1.2e-49
216591007481	HMMPfam hit to PF02824, TGS domain, score 1e-24
216591007482	HMMPfam hit to PF01842, ACT domain, score 2.3e-08
216591007483	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK00413
216591007484	TGS _ThrRS_N:  ThrRS (threonyl-tRNA Synthetase)  is a class II tRNA synthetase that couples threonine to its cognate tRNA.  In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and...; Region: TGS_ThrRS_N; cd01667
216591007485	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
216591007486	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
216591007487	active site
216591007488	dimer interface [polypeptide binding]; other site
216591007489	motif 1; other site
216591007490	motif 2; other site
216591007491	motif 3; other site
216591007492	ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860
216591007493	anticodon binding site; other site
216591007494	HMMPfam hit to PF02824, TGS domain, score 1.4e-10
216591007495	HMMPfam hit to PF07973, Threonyl and Alanyl tRNA synthetase se, score 2.5e-27
216591007496	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 3.6e-63
216591007497	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591007498	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591007499	HMMPfam hit to PF03129, Anticodon binding domain, score 2.7e-25
216591007500	CDS does not contain a standard translation start codon, possible AGG start codon. Similar to Escherichia coli translation initiation factor IF-3 InfC UniProt:P0A707 (EMBL:AP009048 (180 aa) fasta scores: E()=1.6e-39, 70.238% id in 168 aa, and to Burkholderia pseudomallei (pseudomonas pseudomallei) iranslation initiation factor IF-3 InfC UniProt:Q63TM3 (EMBL:BX571965 (178 aa) fasta scores: E()=1e-59, 94.944% id in 178 aa
216591007501	HMMPfam hit to PF05198, Translation initiation factor IF-3, N-termin, score 7.9e-26
216591007502	PS00938 Initiation factor 3 signature.
216591007503	HMMPfam hit to PF00707, Translation initiation factor IF-3, C-termin, score 7.9e-54
216591007504	50S ribosomal protein L35; Reviewed; Region: rpmI; PRK00172
216591007505	HMMPfam hit to PF01632, Ribosomal protein L35, score 1.5e-25
216591007506	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
216591007507	23S rRNA binding site [nucleotide binding]; other site
216591007508	L21 binding site [polypeptide binding]; other site
216591007509	L13 binding site [polypeptide binding]; other site
216591007510	HMMPfam hit to PF00453, Ribosomal protein L20, score 7.5e-58
216591007511	PS00937 Ribosomal protein L20 signature.
216591007512	phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488
216591007513	Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912
216591007514	Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496
216591007515	dimer interface [polypeptide binding]; other site
216591007516	motif 1; other site
216591007517	active site
216591007518	motif 2; other site
216591007519	motif 3; other site
216591007520	HMMPfam hit to PF02912, Aminoacyl tRNA synthetase class II, N, score 6e-27
216591007521	HMMPfam hit to PF01409, tRNA synthetases class II core domain, score 6.3e-141
216591007522	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591007523	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591007524	phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629
216591007525	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796
216591007526	putative tRNA-binding site [nucleotide binding]; other site
216591007527	B3/4 domain; Region: B3_4; pfam03483
216591007528	tRNA synthetase B5 domain; Region: B5; smart00874
216591007529	Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA,  PheRS is an...; Region: PheRS_beta_core; cd00769
216591007530	dimer interface [polypeptide binding]; other site
216591007531	motif 1; other site
216591007532	motif 3; other site
216591007533	motif 2; other site
216591007534	Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; pfam03147
216591007535	HMMPfam hit to PF01588, Putative tRNA binding domain, score 4e-36
216591007536	HMMPfam hit to PF03483, B3/4 domain, score 3.8e-92
216591007537	HMMPfam hit to PF03484, tRNA synthetase B5 domain, score 8.4e-31
216591007538	HMMPfam hit to PF03147, Ferredoxin-fold anticodon binding domain, score 5.5e-19
216591007539	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
216591007540	IHF dimer interface [polypeptide binding]; other site
216591007541	IHF - DNA interface [nucleotide binding]; other site
216591007542	HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 3.7e-47
216591007543	PS00045 Bacterial histone-like DNA-binding proteins signature.
216591007544	MerR HTH family regulatory protein; Region: MerR_1; pfam13411
216591007545	Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators; Region: HTH_MlrA-like_sg2; cd04765
216591007546	DNA binding residues [nucleotide binding]
216591007547	Predicted helix-turn-helix motif with score 1686.000, SD 4.93 at aa 19-40, sequence FTIGEVSELCGVKPHVLRYWEQ
216591007548	HMMPfam hit to PF00376, MerR family regulatory protein, score 2.1e-11
216591007549	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591007550	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591007551	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591007552	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591007553	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007554	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591007555	HMMPfam hit to PF05665, Domain of unknown function (DUF811), score 2.5e-44
216591007556	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591007557	HMMPfam hit to PF05665, Domain of unknown function (DUF811), score 5.2e-38
216591007558	Tyrosine phosphatase family; Region: Y_phosphatase3; pfam13350
216591007559	Tyrosine phosphatase family C-terminal region; Region: Y_phosphatase3C; pfam13348
216591007560	1 probable transmembrane helix predicted for BCAL1491 by TMHMM2.0 at aa 12-34
216591007561	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007562	Methyltransferase domain; Region: Methyltransf_23; pfam13489
216591007563	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
216591007564	Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]; Region: NlpB; COG3317
216591007565	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007566	Uncharacterized conserved protein [Function unknown]; Region: COG1359
216591007567	HMMPfam hit to PF03992, Antibiotic biosynthesis monooxygenase, score 3.6e-21
216591007568	Uncharacterized conserved protein [Function unknown]; Region: COG1434
216591007569	YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259
216591007570	putative active site [active]
216591007571	HMMPfam hit to PF02698, DUF218 domain, score 1.1e-25
216591007572	1 probable transmembrane helix predicted for BCAL1497 by TMHMM2.0 at aa 24-46
216591007573	1 probable transmembrane helix predicted for BCAL1499 by TMHMM2.0 at aa 5-24
216591007574	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591007575	Predicted helix-turn-helix motif with score 994.000, SD 2.57 at aa 76-97, sequence GTLAEIVKRLGTSGRQISLRGR
216591007576	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591007577	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591007578	TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440
216591007579	putative dimerization interface [polypeptide binding]; other site
216591007580	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2e-21
216591007581	Predicted helix-turn-helix motif with score 1777.000, SD 5.24 at aa 18-39, sequence RSFSRAGDEIGLTQSAVSRCVR
216591007582	PS00044 Bacterial regulatory proteins, lysR family signature.
216591007583	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.2e-50
216591007584	aspartate aminotransferase; Provisional; Region: PRK06108
216591007585	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591007586	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591007587	homodimer interface [polypeptide binding]; other site
216591007588	catalytic residue [active]
216591007589	HMMPfam hit to PF01053, Cys/Met metabolism PLP-dependent enzy, score 0.00058
216591007590	HMMPfam hit to PF00155, Aminotransferase class I and II, score 5.5e-56
216591007591	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.
216591007592	Putative transcriptional regulators (Ypuh-like); Region: DUF387; pfam04079
216591007593	HMMPfam hit to PF04079, Putative transcriptional regulators (Ypuh-li, score 4.3e-64
216591007594	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
216591007595	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
216591007596	RNA binding surface [nucleotide binding]; other site
216591007597	Pseudouridine synthase, Escherichia coli RluB like; Region: PseudoU_synth_RluB; cd02556
216591007598	probable active site [active]
216591007599	HMMPfam hit to PF01479, S4 domain, score 8.6e-08
216591007600	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 3.4e-09
216591007601	PS01149 Rsu family of pseudouridine synthase signature.
216591007602	ribosome maturation protein RimP; Reviewed; Region: PRK00092
216591007603	Sm and related proteins; Region: Sm_like; cl00259
216591007604	Bacillus subtilis YxlS-like, C-terminal domain; Region: YlxS_C; cd01734
216591007605	putative oligomer interface [polypeptide binding]; other site
216591007606	putative RNA binding site [nucleotide binding]; other site
216591007607	HMMPfam hit to PF02576, Uncharacterised BCR, YhbC family COG0779, score 7e-49
216591007608	transcription elongation factor NusA; Validated; Region: nusA; PRK09202
216591007609	NusA N-terminal domain; Region: NusA_N; pfam08529
216591007610	S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three...; Region: S1_NusA; cd04455
216591007611	RNA binding site [nucleotide binding]; other site
216591007612	homodimer interface [polypeptide binding]; other site
216591007613	NusA-like KH domain; Region: KH_5; pfam13184
216591007614	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
216591007615	G-X-X-G motif; other site
216591007616	transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954
216591007617	transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954
216591007618	HMMPfam hit to PF08529, NusA N-terminal domain, score 4.5e-60
216591007619	HMMPfam hit to PF00575, S1 RNA binding domain, score 9.7e-10
216591007620	Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364
216591007621	translation initiation factor IF-2; Region: IF-2; TIGR00487
216591007622	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
216591007623	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
216591007624	G1 box; other site
216591007625	putative GEF interaction site [polypeptide binding]; other site
216591007626	GTP/Mg2+ binding site [chemical binding]; other site
216591007627	Switch I region; other site
216591007628	G2 box; other site
216591007629	G3 box; other site
216591007630	Switch II region; other site
216591007631	G4 box; other site
216591007632	G5 box; other site
216591007633	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
216591007634	Translation-initiation factor 2; Region: IF-2; pfam11987
216591007635	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
216591007636	HMMPfam hit to PF08364, Bacterial translation initiation factor I, score 3.7e-20
216591007637	HMMPfam hit to PF04760, Translation initiation factor IF-2, N-ter, score 8.3e-20
216591007638	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 2.3e-53
216591007639	HMMPfam hit to PF01926, GTPase of unknown function, score 9.9e-07
216591007640	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007641	HMMPfam hit to PF03144, Elongation factor Tu domain, score 2.4e-12
216591007642	HMMPfam hit to PF03144, Elongation factor Tu domain, score 1.4e-08
216591007643	PS01176 Initiation factor 2 signature.
216591007644	ribosome-binding factor A; Validated; Region: rbfA; PRK00521
216591007645	HMMPfam hit to PF02033, Ribosome-binding factor A, score 2.6e-23
216591007646	tRNA pseudouridine synthase B; Provisional; Region: truB; PRK01851
216591007647	Pseudouridine synthase, Escherichia coli TruB like; Region: PseudoU_synth_EcTruB; cd02573
216591007648	RNA binding site [nucleotide binding]; other site
216591007649	active site
216591007650	Pseudouridine synthase II TruB, C-terminal; Region: TruB-C_2; pfam09157
216591007651	HMMPfam hit to PF01509, TruB family pseudouridylate synthase (N term, score 6.6e-77
216591007652	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591007653	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591007654	putative substrate translocation pore; other site
216591007655	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591007656	13 probable transmembrane helices predicted for BCAL1510 by TMHMM2.0 at aa 13-32, 54-76, 83-102, 117-136, 143-165, 170-192, 204-223, 233-255, 268-290, 305-327, 339-356, 371-393 and 478-500
216591007657	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.9e-56
216591007658	multidrug efflux system protein EmrA; Provisional; Region: PRK15136
216591007659	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591007660	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591007661	HMMPfam hit to PF00529, HlyD family secretion protein, score 3.7e-77
216591007662	1 probable transmembrane helix predicted for BCAL1511 by TMHMM2.0 at aa 21-43
216591007663	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591007664	HMMPfam hit to PF02321, Outer membrane efflux protein, score 6.6e-37
216591007665	HMMPfam hit to PF02321, Outer membrane efflux protein, score 3.6e-29
216591007666	1 probable transmembrane helix predicted for BCAL1512 by TMHMM2.0 at aa 13-35
216591007667	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007668	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591007669	MarR family; Region: MarR_2; cl17246
216591007670	HMMPfam hit to PF01047, MarR family, score 1e-19
216591007671	Predicted helix-turn-helix motif with score 1271.000, SD 3.52 at aa 47-68, sequence STAAELAREYGIDASAVTRLLD
216591007672	Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]; Region: TypA; COG1217
216591007673	Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases; Region: TypA_BipA; cd01891
216591007674	G1 box; other site
216591007675	putative GEF interaction site [polypeptide binding]; other site
216591007676	GTP/Mg2+ binding site [chemical binding]; other site
216591007677	Switch I region; other site
216591007678	G2 box; other site
216591007679	G3 box; other site
216591007680	Switch II region; other site
216591007681	G4 box; other site
216591007682	G5 box; other site
216591007683	BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu.  BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a...; Region: BipA_TypA_II; cd03691
216591007684	BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants.  BipA is a highly...; Region: BipA_TypA_C; cd03710
216591007685	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 2.2e-68
216591007686	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007687	PS00301 GTP-binding elongation factors signature.
216591007688	HMMPfam hit to PF03144, Elongation factor Tu domain, score 3.4e-09
216591007689	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 9.2e-25
216591007690	2-oxoglutarate dehydrogenase E1 component; Reviewed; Region: sucA; PRK09404
216591007691	Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of...; Region: TPP_E1_OGDC_like; cd02016
216591007692	TPP-binding site [chemical binding]; other site
216591007693	Transketolase, pyrimidine binding domain; Region: Transket_pyr; pfam02779
216591007694	HMMPfam hit to PF00676, Dehydrogenase E1 component, score 8.5e-37
216591007695	HMMPfam hit to PF02779, Transketolase, pyridine binding domain, score 8.7e-73
216591007696	PS00904 Protein prenyltransferases alpha subunit repeat signature.
216591007697	dihydrolipoamide succinyltransferase; Validated; Region: PRK05704
216591007698	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
216591007699	E3 interaction surface; other site
216591007700	lipoyl attachment site [posttranslational modification]; other site
216591007701	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
216591007702	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 2.5e-29
216591007703	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
216591007704	HMMPfam hit to PF02817, e3 binding domain, score 6e-11
216591007705	HMMPfam hit to PF00198, 2-oxoacid dehydrogenases acyltransferas, score 9.2e-147
216591007706	dihydrolipoamide dehydrogenase; Validated; Region: PRK06327
216591007707	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591007708	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
216591007709	HMMPfam hit to PF00890, FAD binding domain, score 0.00093
216591007710	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 2.9e-73
216591007711	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.
216591007712	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 6.6e-31
216591007713	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 1.4e-57
216591007714	Predicted ATPase [General function prediction only]; Region: COG1485
216591007715	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591007716	Walker B; other site
216591007717	D-loop; other site
216591007718	H-loop/switch region; other site
216591007719	HMMPfam hit to PF03969, AFG1-like ATPase, score 2.4e-156
216591007720	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007721	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591007722	Uncharacterized protein conserved in bacteria (DUF2147); Region: DUF2147; pfam09917
216591007723	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007724	Hemolysin activation/secretion protein [Intracellular trafficking and secretion]; Region: FhaC; COG2831
216591007725	POTRA domain, ShlB-type; Region: POTRA_2; pfam08479
216591007726	Haemolysin secretion/activation protein ShlB/FhaC/HecB; Region: ShlB; pfam03865
216591007727	HMMPfam hit to PF08479, POTRA domain, ShlB-type, score 2.6e-24
216591007728	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007729	HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 1.5e-05
216591007730	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007731	Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]; Region: Flp; COG3847
216591007732	HMMPfam hit to PF04964, Flp/Fap pilin component, score 5.2e-19
216591007733	1 probable transmembrane helix predicted for BCAL1525 by TMHMM2.0 at aa 20-42
216591007734	Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: CpaA; COG4960
216591007735	Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: PulO; COG1989
216591007736	4 probable transmembrane helices predicted for BCAL1525a by TMHMM2.0 at aa 2-19, 50-72, 85-107 and 134-156
216591007737	HMMPfam hit to PF01478, Type IV leader peptidase family, score 1.4e-21
216591007738	Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961
216591007739	TadE-like protein; Region: TadE; pfam07811
216591007740	HMMPfam hit to PF07811, TadE-like protein, score 7.2e-17
216591007741	1 probable transmembrane helix predicted for BCAL1526 by TMHMM2.0 at aa 20-42
216591007742	Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]; Region: CpaB; COG3745
216591007743	SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; Region: SAF_CpaB_FlgA_like; cd11614
216591007744	1 probable transmembrane helix predicted for BCAL1527 by TMHMM2.0 at aa 5-27
216591007745	HMMPfam hit to PF06981, Flp pilus assembly protein CpaB, score 1.2e-25
216591007746	Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]; Region: CpaC; COG4964
216591007747	Pilus formation protein N terminal region; Region: T2SS-T3SS_pil_N; pfam13629
216591007748	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
216591007749	HMMPfam hit to PF00263, Bacterial type II and III secretion system p, score 3.2e-65
216591007750	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
216591007751	AAA domain; Region: AAA_31; pfam13614
216591007752	This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains...; Region: CpaE_like; cd03111
216591007753	Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]; Region: CpaF; COG4962
216591007754	Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to...; Region: VirB11-like_ATPase; cd01130
216591007755	ATP binding site [chemical binding]; other site
216591007756	Walker A motif; other site
216591007757	hexamer interface [polypeptide binding]; other site
216591007758	Walker B motif; other site
216591007759	HMMPfam hit to PF00437, Type II/IV secretion system protein, score 9e-100
216591007760	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007761	Flp pilus assembly protein TadB [Intracellular trafficking and secretion]; Region: TadB; COG4965
216591007762	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
216591007763	5 probable transmembrane helices predicted for BCAL1531 by TMHMM2.0 at aa 4-23, 102-119, 123-145, 271-293 and 303-322
216591007764	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 2.3e-14
216591007765	Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: TadC; COG2064
216591007766	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
216591007767	4 probable transmembrane helices predicted for BCAL1532 by TMHMM2.0 at aa 10-32, 120-142, 152-169 and 304-326
216591007768	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 2.9e-12
216591007769	Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]; Region: TadD; COG5010
216591007770	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007771	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.00044
216591007772	Protein of unknown function (DUF3613); Region: DUF3613; pfam12266
216591007773	Putative Flp pilus-assembly TadE/G-like; Region: Tad; pfam13400
216591007774	1 probable transmembrane helix predicted for BCAL1535 by TMHMM2.0 at aa 2-24
216591007775	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007776	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]; Region: PspF; COG1221
216591007777	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591007778	Walker A motif; other site
216591007779	ATP binding site [chemical binding]; other site
216591007780	Walker B motif; other site
216591007781	arginine finger; other site
216591007782	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591007783	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3.8e-107
216591007784	HMMPfam hit to PF07728, ATPase family associated with various, score 0.00045
216591007785	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591007786	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591007787	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591007788	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 3e-10
216591007789	Predicted helix-turn-helix motif with score 1271.000, SD 3.52 at aa 427-448, sequence WRRQDTAQQLGISRKVLWEKMR
216591007790	Protein of unknown function (DUF2968); Region: DUF2968; pfam11180
216591007791	bacterial Hfq-like; Region: Hfq; cd01716
216591007792	hexamer interface [polypeptide binding]; other site
216591007793	Sm1 motif; other site
216591007794	RNA binding site [nucleotide binding]; other site
216591007795	Sm2 motif; other site
216591007796	HMMPfam hit to PF01423, LSM domain, score 7.6e-05
216591007797	2 probable transmembrane helices predicted for BCAL1539 by TMHMM2.0 at aa 7-29 and 44-66
216591007798	Protein of unknown function (DUF1571); Region: DUF1571; pfam07608
216591007799	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08974
216591007800	Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD; Region: FC-FACS_FadD_like; cd05936
216591007801	acyl-activating enzyme (AAE) consensus motif; other site
216591007802	putative AMP binding site [chemical binding]; other site
216591007803	putative active site [active]
216591007804	putative CoA binding site [chemical binding]; other site
216591007805	HMMPfam hit to PF00501, AMP-binding enzyme, score 8.3e-132
216591007806	PS00455 Putative AMP-binding domain signature.
216591007807	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591007808	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591007809	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3e-18
216591007810	putative sialic acid transporter; Region: 2A0112; TIGR00891
216591007811	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591007812	putative substrate translocation pore; other site
216591007813	HMMPfam hit to PF00083, Sugar (and other) transporter, score 5.5e-08
216591007814	8 probable transmembrane helices predicted for BCAL1543 by TMHMM2.0 at aa 24-46, 56-78, 99-121, 173-195, 224-241, 261-280, 293-315 and 379-401
216591007815	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 9.9e-38
216591007816	PS00217 Sugar transport proteins signature 2.
216591007817	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
216591007818	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591007819	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.9e-08
216591007820	Putative ParB-like nuclease; Region: ParBc_2; pfam08857
216591007821	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
216591007822	Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659
216591007823	Sulfate transporter family; Region: Sulfate_transp; pfam00916
216591007824	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
216591007825	HMMPfam hit to PF00860, Permease family, score 0.0024
216591007826	9 probable transmembrane helices predicted for BCAL1546 by TMHMM2.0 at aa 64-86, 106-128, 149-171, 186-208, 213-230, 260-282, 336-353, 363-385 and 392-414
216591007827	HMMPfam hit to PF00916, Sulfate transporter family, score 2.2e-45
216591007828	PS00131 Serine carboxypeptidases, serine active site.
216591007829	HMMPfam hit to PF01740, STAS domain, score 0.0026
216591007830	Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into...; Region: bac_FRK; cd01167
216591007831	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591007832	putative substrate binding site [chemical binding]; other site
216591007833	putative ATP binding site [chemical binding]; other site
216591007834	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 6.2e-45
216591007835	Predicted helix-turn-helix motif with score 1086.000, SD 2.89 at aa 175-196, sequence RRLTALADWIKVSDEDLRGLFP
216591007836	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007837	Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Region: PBP1_ABC_sugar_binding_like_11; cd06321
216591007838	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591007839	putative ligand binding site [chemical binding]; other site
216591007840	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 2.5e-06
216591007841	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591007842	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591007843	TM-ABC transporter signature motif; other site
216591007844	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 7.9e-68
216591007845	8 probable transmembrane helices predicted for BCAL1549 by TMHMM2.0 at aa 36-58, 68-90, 95-117, 121-143, 148-165, 185-207, 239-261 and 293-315
216591007846	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007847	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
216591007848	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591007849	Walker A/P-loop; other site
216591007850	ATP binding site [chemical binding]; other site
216591007851	Q-loop/lid; other site
216591007852	ABC transporter signature motif; other site
216591007853	Walker B; other site
216591007854	D-loop; other site
216591007855	H-loop/switch region; other site
216591007856	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591007857	HMMPfam hit to PF00005, ABC transporter, score 1.6e-24
216591007858	PS00211 ABC transporters family signature.
216591007859	HMMPfam hit to PF00005, ABC transporter, score 5.9e-48
216591007860	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007861	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
216591007862	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
216591007863	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
216591007864	HMMPfam hit to PF00480, ROK family, score 3.7e-09
216591007865	Predicted helix-turn-helix motif with score 981.000, SD 2.53 at aa 33-54, sequence ASKADLARLANMTGTAVGSIIG
216591007866	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591007867	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591007868	substrate binding pocket [chemical binding]; other site
216591007869	membrane-bound complex binding site; other site
216591007870	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 0.0028
216591007871	ribonuclease R; Region: RNase_R; TIGR02063
216591007872	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
216591007873	RNB domain; Region: RNB; pfam00773
216591007874	S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase...; Region: S1_RNase_R; cd04471
216591007875	RNA binding site [nucleotide binding]; other site
216591007876	HMMPfam hit to PF08206, Ribonuclease B OB domain, score 1.3e-29
216591007877	HMMPfam hit to PF00773, RNB-like protein, score 9.1e-92
216591007878	PS01175 Ribonuclease II family signature.
216591007879	HMMPfam hit to PF00575, S1 RNA binding domain, score 4.3e-14
216591007880	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032
216591007881	23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional; Region: PRK11181
216591007882	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
216591007883	HMMPfam hit to PF08032, RNA 2'-O ribose methyltransferase subs, score 3e-17
216591007884	HMMPfam hit to PF00588, SpoU rRNA Methylase family, score 1.6e-59
216591007885	N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: ampD; COG3023
216591007886	Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20...; Region: PGRP; cd06583
216591007887	amidase catalytic site [active]
216591007888	Zn binding residues [ion binding]; other site
216591007889	substrate binding site [chemical binding]; other site
216591007890	Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471
216591007891	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007892	HMMPfam hit to PF01510, N-acetylmuramoyl-L-alanine amidase, score 4.2e-37
216591007893	HMMPfam hit to PF01471, Putative peptidoglycan binding domain, score 0.0034
216591007894	RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398
216591007895	tetramer (dimer of dimers) interface [polypeptide binding]; other site
216591007896	active site
216591007897	dimer interface [polypeptide binding]; other site
216591007898	HMMPfam hit to PF06026, Ribose 5-phosphate isomerase A (phosph, score 2.6e-83
216591007899	PS00063 Aldo/keto reductase family putative active site signature.
216591007900	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591007901	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591007902	DNA-binding site [nucleotide binding]; DNA binding site
216591007903	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
216591007904	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 7.2e-08
216591007905	HMMPfam hit to PF07729, FCD domain, score 1.1e-26
216591007906	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Rossm, score 1.5e-31
216591007907	BcenGI7
216591007908	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007909	UMP phosphatase; Provisional; Region: PRK10444
216591007910	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007911	Uncharacterized protein conserved in bacteria (DUF2313); Region: DUF2313; cl01542
216591007912	Uncharacterized homolog of phage Mu protein gp47 [Function unknown]; Region: XkdT; COG3299
216591007913	HMMPfam hit to PF04865, Baseplate J-like protein, score 1.6e-28
216591007914	Phage protein GP46; Region: GP46; pfam07409
216591007915	HMMPfam hit to PF07409, Phage protein GP46, score 3.6e-20
216591007916	Bacteriophage Mu Gp45 protein; Region: Phage_Mu_Gp45; cl15410
216591007917	Mu-like prophage tail protein gpP [General function prediction only]; Region: COG4379
216591007918	Phage late control gene D protein (GPD); Region: Phage_GPD; cl15796
216591007919	HMMPfam hit to PF06893, Bacteriophage Mu P protein, score 4.8e-62
216591007920	Mu-like prophage DNA circulation protein [General function prediction only]; Region: COG4228
216591007921	DNA circulation protein N-terminus; Region: DNA_circ_N; pfam07157
216591007922	HMMPfam hit to PF07157, DNA circulation protein N-terminus, score 3.1e-20
216591007923	Phage-related minor tail protein; Region: PhageMin_Tail; pfam10145
216591007924	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cl14786
216591007925	Mu-like prophage FluMu protein gp41 [Function unknown]; Region: COG4518
216591007926	PS00430 TonB-dependent receptor proteins signature 1.
216591007927	Phage tail sheath protein; Region: Phage_sheath_1; cl01389
216591007928	Mu-like prophage tail sheath protein gpL [General function prediction only]; Region: COG4386
216591007929	HMMPfam hit to PF06274, Bacteriophage Mu tail sheath protein (GpL, score 7e-39
216591007930	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591007931	Domain of unknown function (DUF1834); Region: DUF1834; cl02087
216591007932	Phage virion morphogenesis family; Region: Phage_tail_S; cl02089
216591007933	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007934	Protein of unknown function (DUF1320); Region: DUF1320; cl01818
216591007935	Protein of unknown function (DUF1018); Region: DUF1018; cl01815
216591007936	1 probable transmembrane helix predicted for BCAL1583 by TMHMM2.0 at aa 7-29
216591007937	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
216591007938	IHF dimer interface [polypeptide binding]; other site
216591007939	IHF - DNA interface [nucleotide binding]; other site
216591007940	HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 4.5e-44
216591007941	PS00045 Bacterial histone-like DNA-binding proteins signature.
216591007942	Protein of unknown function (DUF3164); Region: DUF3164; pfam11363
216591007943	AAA domain; Region: AAA_22; pfam13401
216591007944	AAA domain; Region: AAA_30; pfam13604
216591007945	PS00017 ATP/GTP-binding site motif A (P-loop).
216591007946	Integrase core domain; Region: rve; pfam00665
216591007947	Mu transposase, C-terminal; Region: Mu-transpos_C; pfam09299
216591007948	HMMPfam hit to PF00665, Integrase core domain, score 1.1e-12
216591007949	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591007950	phage-associated protein, BcepMu gp16 family; Region: BcepMu_gp16; TIGR04111
216591007951	Predicted helix-turn-helix motif with score 1088.000, SD 2.89 at aa 23-44, sequence KTIKEWAQEHGYDYVLVSRVIR
216591007952	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591007953	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591007954	non-specific DNA binding site [nucleotide binding]; other site
216591007955	salt bridge; other site
216591007956	sequence-specific DNA binding site [nucleotide binding]; other site
216591007957	HMMPfam hit to PF01381, Helix-turn-helix, score 4.7e-06
216591007958	Predicted helix-turn-helix motif with score 1321.000, SD 3.69 at aa 18-39, sequence LSQSAFADVAGVTKTTQGNYET
216591007959	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007960	Protein of unknown function (DUF4063); Region: DUF4063; pfam13272
216591007961	1 probable transmembrane helix predicted for BCAL1598 by TMHMM2.0 at aa 13-30
216591007962	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
216591007963	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591007964	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591007965	catalytic residue [active]
216591007966	1 probable transmembrane helix predicted for BCAL1599 by TMHMM2.0 at aa 20-42
216591007967	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 1.5e-09
216591007968	1 probable transmembrane helix predicted for BCAL1599a by TMHMM2.0 at aa 15-34
216591007969	Prokaryotic dksA/traR C4-type zinc finger; Region: zf-dskA_traR; cl00755
216591007970	HMMPfam hit to PF01258, Prokaryotic dksA/traR C4-type zinc finge, score 4.9e-12
216591007971	citrate (Si)-synthase, eukaryotic; Region: cit_synth_euk; TIGR01793
216591007972	1 probable transmembrane helix predicted for BCAL1601 by TMHMM2.0 at aa 71-93
216591007973	Protein of unknown function (DUF1804); Region: DUF1804; pfam08822
216591007974	Homeodomain-like domain; Region: HTH_23; cl17451
216591007975	Predicted helix-turn-helix motif with score 1641.000, SD 4.78 at aa 19-40, sequence MPLTTAADVCKVSYQTARNWKR
216591007976	Phage-related terminase [General function prediction only]; Region: COG5362; cl02216
216591007977	Protein of unknown function (DUF935); Region: DUF935; pfam06074
216591007978	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591007979	Phage Mu protein F like protein; Region: Phage_Mu_F; cl10072
216591007980	HMMPfam hit to PF04233, Phage Mu protein F like protein, score 1.6e-27
216591007981	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591007982	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591007983	dimer interface [polypeptide binding]; other site
216591007984	conserved gate region; other site
216591007985	putative PBP binding loops; other site
216591007986	ABC-ATPase subunit interface; other site
216591007987	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.7e-15
216591007988	1 probable transmembrane helix predicted for BCAL1609 by TMHMM2.0 at aa 15-37
216591007989	cystine transporter subunit; Provisional; Region: PRK11260
216591007990	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591007991	substrate binding pocket [chemical binding]; other site
216591007992	membrane-bound complex binding site; other site
216591007993	hinge residues; other site
216591007994	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 2.6e-96
216591007995	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591007996	dihydroorotate dehydrogenase 2; Reviewed; Region: PRK05286
216591007997	Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires...; Region: DHOD_2_like; cd04738
216591007998	quinone interaction residues [chemical binding]; other site
216591007999	active site
216591008000	catalytic residues [active]
216591008001	FMN binding site [chemical binding]; other site
216591008002	substrate binding site [chemical binding]; other site
216591008003	HMMPfam hit to PF01180, Dihydroorotate dehydrogenase, score 6.7e-105
216591008004	PS00912 Dihydroorotate dehydrogenase signature 2.
216591008005	PS00911 Dihydroorotate dehydrogenase signature 1.
216591008006	arginyl-tRNA-protein transferase; Provisional; Region: PRK01305
216591008007	Arginine-tRNA-protein transferase, N terminus; Region: ATE_N; pfam04376
216591008008	Arginine-tRNA-protein transferase, C terminus; Region: ATE_C; pfam04377
216591008009	HMMPfam hit to PF04377, Arginine-tRNA-protein transferase, C terminu, score 1.4e-46
216591008010	Predicted helix-turn-helix motif with score 1290.000, SD 3.58 at aa 203-224, sequence LWQIEQAKSLGLPYVYLGYWIR
216591008011	HMMPfam hit to PF04376, Arginine-tRNA-protein transferase, N terminu, score 2.2e-26
216591008012	leucyl/phenylalanyl-tRNA--protein transferase; Reviewed; Region: aat; PRK00301
216591008013	HMMPfam hit to PF03588, Leucyl/phenylalanyl-tRNA protein transf, score 8.6e-83
216591008014	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_4; cd04511
216591008015	nudix motif; other site
216591008016	HMMPfam hit to PF00293, NUDIX domain, score 6.5e-17
216591008017	PS00893 mutT domain signature.
216591008018	hypothetical protein; Provisional; Region: PRK02487
216591008019	HMMPfam hit to PF03928, Domain of unknown function (DUF336), score 5e-39
216591008020	Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]; Region: EmrE; COG2076
216591008021	HMMPfam hit to PF00893, Small Multidrug Resistance protein, score 6.3e-38
216591008022	4 probable transmembrane helices predicted for BCAL1616 by TMHMM2.0 at aa 5-22, 32-51, 58-80 and 84-106
216591008023	3-hydroxyisobutyryl-CoA hydrolase; Provisional; Region: PRK05617
216591008024	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591008025	substrate binding site [chemical binding]; other site
216591008026	oxyanion hole (OAH) forming residues; other site
216591008027	trimer interface [polypeptide binding]; other site
216591008028	2-enoyl-CoA Hydratase C-terminal region; Region: ECH_C; pfam13766
216591008029	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 3.2e-17
216591008030	4 probable transmembrane helices predicted for BCAL1618 by TMHMM2.0 at aa 5-26, 46-68, 75-97 and 112-134
216591008031	alkanesulfonate monooxygenase; Provisional; Region: PRK00719
216591008032	Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094
216591008033	active site
216591008034	dimer interface [polypeptide binding]; other site
216591008035	non-prolyl cis peptide bond; other site
216591008036	insertion regions; other site
216591008037	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 0.0015
216591008038	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591008039	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008040	dimer interface [polypeptide binding]; other site
216591008041	conserved gate region; other site
216591008042	putative PBP binding loops; other site
216591008043	ABC-ATPase subunit interface; other site
216591008044	7 probable transmembrane helices predicted for BCAL1620 by TMHMM2.0 at aa 15-37, 75-97, 107-129, 136-155, 175-197, 199-221 and 231-253
216591008045	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.7e-33
216591008046	aliphatic sulfonates transport ATP-binding subunit; Provisional; Region: ssuB; PRK11247
216591008047	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591008048	Walker A/P-loop; other site
216591008049	ATP binding site [chemical binding]; other site
216591008050	Q-loop/lid; other site
216591008051	ABC transporter signature motif; other site
216591008052	Walker B; other site
216591008053	D-loop; other site
216591008054	H-loop/switch region; other site
216591008055	HMMPfam hit to PF00005, ABC transporter, score 3.8e-57
216591008056	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008057	PS00211 ABC transporters family signature.
216591008058	Molybdopterin-binding protein [Coenzyme metabolism]; Region: MopI; COG3585
216591008059	HMMPfam hit to PF03459, TOBE domain, score 8.5e-14
216591008060	tRNA-dihydrouridine synthase A; Provisional; Region: PRK11815
216591008061	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
216591008062	FMN binding site [chemical binding]; other site
216591008063	active site
216591008064	catalytic residues [active]
216591008065	substrate binding site [chemical binding]; other site
216591008066	HMMPfam hit to PF01207, Dihydrouridine synthase (Dus), score 1.1e-103
216591008067	PS01136 Uncharacterized protein family UPF0034 signature.
216591008068	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
216591008069	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591008070	Coenzyme A binding pocket [chemical binding]; other site
216591008071	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.2e-17
216591008072	Family of unknown function (DUF695); Region: DUF695; pfam05117
216591008073	Protein of unknown function (DUF1260); Region: DUF1260; pfam06877
216591008074	HMMPfam hit to PF06877, Protein of unknown function (DUF1260), score 2.1e-07
216591008075	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008076	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008077	Probable gene remnant. Similar to the C-terminal region of Burkholderia cenocepacia HI2424 hypothetical protein UniProt:Q4LRE5 (EMBL:AAHL01000024) (180 aa) fasta scores: E()=6.1e-24, 85.135% id in 74 aa
216591008078	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_8; cd07246
216591008079	putative dimer interface [polypeptide binding]; other site
216591008080	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591008081	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 5.2e-13
216591008082	FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203
216591008083	GAF domain; Region: GAF; pfam01590
216591008084	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591008085	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591008086	metal binding site [ion binding]; metal-binding site
216591008087	active site
216591008088	I-site; other site
216591008089	HMMPfam hit to PF00990, GGDEF domain, score 1.8e-42
216591008090	HMMPfam hit to PF01590, GAF domain, score 1.6e-23
216591008091	1 probable transmembrane helix predicted for BCAL1635a by TMHMM2.0 at aa 4-21
216591008092	Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins; Region: PLDc_Nuc; cd09170
216591008093	PLD-like domain; Region: PLDc_2; pfam13091
216591008094	putative active site [active]
216591008095	catalytic site [active]
216591008096	Predicted transcriptional regulators [Transcription]; Region: COG1733
216591008097	HxlR-like helix-turn-helix; Region: HxlR; pfam01638
216591008098	HMMPfam hit to PF01638, HxlR-like helix-turn-helix, score 7.8e-29
216591008099	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
216591008100	CoenzymeA binding site [chemical binding]; other site
216591008101	subunit interaction site [polypeptide binding]; other site
216591008102	PHB binding site; other site
216591008103	HMMPfam hit to PF03061, Thioesterase superfamily, score 9.6e-11
216591008104	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591008105	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591008106	active site
216591008107	catalytic tetrad [active]
216591008108	HMMPfam hit to PF00248, Aldo/keto reductase family, score 2.4e-54
216591008109	citrate-proton symporter; Provisional; Region: PRK15075
216591008110	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591008111	putative substrate translocation pore; other site
216591008112	HMMPfam hit to PF00083, Sugar (and other) transporter, score 1.3e-18
216591008113	12 probable transmembrane helices predicted for BCAL1640 by TMHMM2.0 at aa 23-45, 60-82, 94-116, 126-148, 161-183, 193-212, 243-262, 277-299, 306-328, 338-360, 372-394 and 404-421
216591008114	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.1e-22
216591008115	PS00216 Sugar transport proteins signature 1.
216591008116	hypothetical protein; Provisional; Region: PRK07079
216591008117	Uncharacterized M20 Dipeptidases; Region: M20_dipept_like_2; cd05679
216591008118	metal binding site [ion binding]; metal-binding site
216591008119	putative dimer interface [polypeptide binding]; other site
216591008120	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 4.7e-21
216591008121	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 1.3e-08
216591008122	PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1.
216591008123	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591008124	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591008125	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591008126	dimerization interface [polypeptide binding]; other site
216591008127	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.9e-19
216591008128	Predicted helix-turn-helix motif with score 1565.000, SD 4.52 at aa 27-48, sequence GSISDASARLHVAVSAISRQIA
216591008129	PS00044 Bacterial regulatory proteins, lysR family signature.
216591008130	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.1e-38
216591008131	tRNA 2-selenouridine synthase; Provisional; Region: PRK11784
216591008132	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125
216591008133	active site residue [active]
216591008134	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591008135	Walker A/P-loop; other site
216591008136	ATP binding site [chemical binding]; other site
216591008137	Q-loop/lid; other site
216591008138	ABC transporter signature motif; other site
216591008139	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008140	Predicted permease; Region: DUF318; cl17795
216591008141	9 probable transmembrane helices predicted for BCAL1644 by TMHMM2.0 at aa 10-28, 80-102, 112-134, 146-168, 172-191, 232-254, 264-286, 291-313 and 328-350
216591008142	HMMPfam hit to PF03773, Predicted permease, score 4.8e-47
216591008143	PS01047 Heavy-metal-associated domain.
216591008144	ABC-2 type transporter; Region: ABC2_membrane; cl17235
216591008145	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
216591008146	6 probable transmembrane helices predicted for BCAL1646 by TMHMM2.0 at aa 45-67, 77-99, 128-150, 165-187, 192-214 and 249-271
216591008147	HMMPfam hit to PF01061, ABC-2 type transporter, score 1.4e-29
216591008148	nodulation ABC transporter NodI; Provisional; Region: PRK13537
216591008149	ATP-binding cassette domain of the lipid transporters, subfamily A; Region: ABC_subfamily_A; cd03263
216591008150	Walker A/P-loop; other site
216591008151	ATP binding site [chemical binding]; other site
216591008152	Q-loop/lid; other site
216591008153	ABC transporter signature motif; other site
216591008154	Walker B; other site
216591008155	D-loop; other site
216591008156	H-loop/switch region; other site
216591008157	HMMPfam hit to PF00005, ABC transporter, score 3.3e-66
216591008158	PS00211 ABC transporters family signature.
216591008159	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008160	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591008161	Ligand Binding Site [chemical binding]; other site
216591008162	HMMPfam hit to PF00582, Universal stress protein family, score 1e-10
216591008163	Protein of unknown function (DUF2939); Region: DUF2939; pfam11159
216591008164	2 probable transmembrane helices predicted for BCAL1649 by TMHMM2.0 at aa 15-37 and 85-107
216591008165	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591008166	LexA repressor; Validated; Region: PRK00215
216591008167	LexA DNA binding domain; Region: LexA_DNA_bind; pfam01726
216591008168	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
216591008169	Catalytic site [active]
216591008170	HMMPfam hit to PF00717, Peptidase S24-like, score 2.2e-22
216591008171	HMMPfam hit to PF01726, LexA DNA binding domain, score 6.5e-35
216591008172	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591008173	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
216591008174	substrate binding pocket [chemical binding]; other site
216591008175	membrane-bound complex binding site; other site
216591008176	1 probable transmembrane helix predicted for BCAL1652 by TMHMM2.0 at aa 7-29
216591008177	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 2e-14
216591008178	PS00757 Prokaryotic sulfate-binding proteins signature 2.
216591008179	ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555
216591008180	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008181	dimer interface [polypeptide binding]; other site
216591008182	conserved gate region; other site
216591008183	putative PBP binding loops; other site
216591008184	ABC-ATPase subunit interface; other site
216591008185	6 probable transmembrane helices predicted for BCAL1653 by TMHMM2.0 at aa 12-34, 66-88, 101-123, 138-160, 190-212 and 244-266
216591008186	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.9e-26
216591008187	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591008188	ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555
216591008189	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008190	dimer interface [polypeptide binding]; other site
216591008191	conserved gate region; other site
216591008192	putative PBP binding loops; other site
216591008193	ABC-ATPase subunit interface; other site
216591008194	6 probable transmembrane helices predicted for BCAL1654 by TMHMM2.0 at aa 34-56, 82-104, 121-143, 153-175, 214-236 and 259-281
216591008195	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.8e-17
216591008196	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591008197	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]; Region: CysA; COG1118
216591008198	ATP-binding cassette domain of the sulfate transporter; Region: ABC_CysA_sulfate_importer; cd03296
216591008199	Walker A/P-loop; other site
216591008200	ATP binding site [chemical binding]; other site
216591008201	Q-loop/lid; other site
216591008202	ABC transporter signature motif; other site
216591008203	Walker B; other site
216591008204	D-loop; other site
216591008205	H-loop/switch region; other site
216591008206	TOBE-like domain; Region: TOBE_3; pfam12857
216591008207	HMMPfam hit to PF00005, ABC transporter, score 5.8e-71
216591008208	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008209	PS00211 ABC transporters family signature.
216591008210	HMMPfam hit to PF08402, TOBE domain, score 0.0023
216591008211	HMMPfam hit to PF03459, TOBE domain, score 0.0033
216591008212	transcriptional regulator CysB-like protein; Reviewed; Region: PRK12683
216591008213	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591008214	The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold; Region: PBP2_CysB_like; cd08413
216591008215	substrate binding site [chemical binding]; other site
216591008216	dimerization interface [polypeptide binding]; other site
216591008217	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.4e-16
216591008218	Predicted helix-turn-helix motif with score 1606.000, SD 4.66 at aa 17-38, sequence MNLTEVANVLYTSQSGVSKQIK
216591008219	PS00044 Bacterial regulatory proteins, lysR family signature.
216591008220	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.6e-48
216591008221	Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_sugar_binding_like; cd01536
216591008222	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591008223	ligand binding site [chemical binding]; other site
216591008224	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 7.8e-09
216591008225	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
216591008226	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591008227	Walker A/P-loop; other site
216591008228	ATP binding site [chemical binding]; other site
216591008229	Q-loop/lid; other site
216591008230	ABC transporter signature motif; other site
216591008231	Walker B; other site
216591008232	D-loop; other site
216591008233	H-loop/switch region; other site
216591008234	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591008235	HMMPfam hit to PF00005, ABC transporter, score 9.9e-55
216591008236	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008237	HMMPfam hit to PF00005, ABC transporter, score 2e-17
216591008238	PS00211 ABC transporters family signature.
216591008239	Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of...; Region: TM_PBP1_branched-chain-AA_like; cl00454
216591008240	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591008241	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591008242	TM-ABC transporter signature motif; other site
216591008243	6 probable transmembrane helices predicted for BCAL1659 by TMHMM2.0 at aa 30-52, 77-99, 112-134, 180-202, 233-252 and 287-309
216591008244	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 2e-71
216591008245	PS00307 Legume lectins beta-chain signature.
216591008246	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591008247	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591008248	DNA binding site [nucleotide binding]
216591008249	domain linker motif; other site
216591008250	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
216591008251	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 5.1e-09
216591008252	Predicted helix-turn-helix motif with score 1745.000, SD 5.13 at aa 2-23, sequence ATIKDVAAMAGVSFTTVSHVVN
216591008253	PS00356 Bacterial regulatory proteins, lacI family signature.
216591008254	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 3.6e-23
216591008255	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591008256	Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174
216591008257	substrate binding site [chemical binding]; other site
216591008258	dimer interface [polypeptide binding]; other site
216591008259	ATP binding site [chemical binding]; other site
216591008260	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 9.6e-73
216591008261	PS00583 pfkB family of carbohydrate kinases signature 1.
216591008262	HMMPfam hit to PF08543, Phosphomethylpyrimidine kinase, score 8.4e-05
216591008263	PS00584 pfkB family of carbohydrate kinases signature 2.
216591008264	Tar ligand binding domain homologue; Region: TarH; pfam02203
216591008265	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591008266	dimerization interface [polypeptide binding]; other site
216591008267	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591008268	dimer interface [polypeptide binding]; other site
216591008269	Methyl-accepting chemotaxis protein (MCP) signalling domain; Region: MCPsignal; pfam00015
216591008270	putative CheW interface [polypeptide binding]; other site
216591008271	1 probable transmembrane helix predicted for BCAL1662 by TMHMM2.0 at aa 13-35
216591008272	HMMPfam hit to PF00672, HAMP domain, score 5.3e-14
216591008273	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 4.6e-100
216591008274	PrkA family serine protein kinase; Provisional; Region: PRK15455
216591008275	AAA ATPase domain; Region: AAA_16; pfam13191
216591008276	Walker A motif; other site
216591008277	ATP binding site [chemical binding]; other site
216591008278	PrkA serine protein kinase C-terminal domain; Region: PrkA; pfam06798
216591008279	HMMPfam hit to PF08298, PrkA AAA domain, score 3.8e-250
216591008280	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008281	HMMPfam hit to PF06798, PrkA serine protein kinase C-terminal domain, score 4.4e-172
216591008282	hypothetical protein; Provisional; Region: PRK05325
216591008283	HMMPfam hit to PF04285, Protein of unknown function (DUF444), score 5.3e-192
216591008284	SpoVR family protein; Provisional; Region: PRK11767
216591008285	Uncharacterized conserved protein [Function unknown]; Region: SpoVR; COG2719
216591008286	HMMPfam hit to PF04293, SpoVR like protein, score 5.1e-291
216591008287	alpha-ketoglutarate transporter; Provisional; Region: PRK10406
216591008288	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591008289	putative substrate translocation pore; other site
216591008290	HMMPfam hit to PF00083, Sugar (and other) transporter, score 2.4e-19
216591008291	12 probable transmembrane helices predicted for BCAL1666 by TMHMM2.0 at aa 20-39, 59-81, 93-115, 119-138, 158-180, 195-212, 242-264, 279-301, 308-325, 335-357, 370-392 and 402-419
216591008292	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.7e-19
216591008293	PS00217 Sugar transport proteins signature 2.
216591008294	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591008295	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591008296	substrate binding pocket [chemical binding]; other site
216591008297	membrane-bound complex binding site; other site
216591008298	hinge residues; other site
216591008299	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 9e-76
216591008300	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008301	dimer interface [polypeptide binding]; other site
216591008302	conserved gate region; other site
216591008303	putative PBP binding loops; other site
216591008304	ABC-ATPase subunit interface; other site
216591008305	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.9e-12
216591008306	4 probable transmembrane helices predicted for BCAL1669 by TMHMM2.0 at aa 24-46, 71-93, 108-130 and 212-234
216591008307	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008308	dimer interface [polypeptide binding]; other site
216591008309	conserved gate region; other site
216591008310	putative PBP binding loops; other site
216591008311	ABC-ATPase subunit interface; other site
216591008312	5 probable transmembrane helices predicted for BCAL1670 by TMHMM2.0 at aa 7-29, 39-61, 73-95, 105-127 and 201-223
216591008313	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 6.2e-25
216591008314	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591008315	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
216591008316	Peptidase family M23; Region: Peptidase_M23; pfam01551
216591008317	HMMPfam hit to PF01551, Peptidase family M23, score 6.8e-52
216591008318	1 probable transmembrane helix predicted for BCAL1671 by TMHMM2.0 at aa 20-42
216591008319	CDS contains a frameshift after codon 42. Similar to Pseudomonas putida probable HTH-type transcriptional regulator ArpR UniProt:Q9KJC4 (EMBL:AF183959) (210 aa) fasta scores: E()=1.6e-15, 32.243% id in 214 aa, and to Burkholderia cenocepacia HI2424 regulatory protein, TetR UniProt:Q4LRA6 (EMBL:AAHL01000024) (215 aa) fasta scores: E()=7.5e-83, 99.065% id in 214 aa
216591008320	HMMPfam hit to PF08361, MAATS-type transcriptional repressor, C-term, score 1.2e-06
216591008321	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 2.7e-14
216591008322	Predicted helix-turn-helix motif with score 1373.000, SD 3.86 at aa 32-53, sequence TAMADLAEAAGMSRGAVYGHYR
216591008323	periplasmic multidrug efflux lipoprotein precursor; Reviewed; Region: PRK09578
216591008324	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
216591008325	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591008326	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008327	HMMPfam hit to PF00529, HlyD family secretion protein, score 6.1e-71
216591008328	multidrug efflux protein; Reviewed; Region: PRK09577
216591008329	Protein export membrane protein; Region: SecD_SecF; cl14618
216591008330	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591008331	11 probable transmembrane helices predicted for BCAL1675 by TMHMM2.0 at aa 10-32, 339-361, 365-387, 437-459, 474-496, 538-560, 864-886, 893-915, 920-942, 963-985 and 1000-1022
216591008332	Outer membrane efflux protein; Region: OEP; pfam02321
216591008333	Outer membrane efflux protein; Region: OEP; pfam02321
216591008334	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008335	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.9e-35
216591008336	HMMPfam hit to PF02321, Outer membrane efflux protein, score 6.5e-45
216591008337	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
216591008338	HMMPfam hit to PF00419, Fimbrial protein, score 1.9e-44
216591008339	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
216591008340	PapC N-terminal domain; Region: PapC_N; pfam13954
216591008341	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
216591008342	PapC C-terminal domain; Region: PapC_C; pfam13953
216591008343	HMMPfam hit to PF00577, Fimbrial Usher protein, score 7.6e-235
216591008344	PS01151 Fimbrial biogenesis outer membrane usher protein signature.
216591008345	putativi pili assembly chaperone; Provisional; Region: PRK11385
216591008346	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
216591008347	Gram-negative pili assembly chaperone, C-terminal domain; Region: Pili_assembly_C; pfam02753
216591008348	1 probable transmembrane helix predicted for BCAL1679 by TMHMM2.0 at aa 13-32
216591008349	HMMPfam hit to PF00345, Gram-negative pili assembly chaperone, score 5.4e-47
216591008350	PS00635 Gram-negative pili assembly chaperone signature.
216591008351	HMMPfam hit to PF02753, Gram-negative pili assembly chaperone, score 7.3e-08
216591008352	Fimbrial protein; Region: Fimbrial; pfam00419
216591008353	1 probable transmembrane helix predicted for BCAL1680 by TMHMM2.0 at aa 13-32
216591008354	HMMPfam hit to PF00419, Fimbrial protein, score 0.014
216591008355	Predicted integral membrane proteins containing uncharacterized repeats [Function unknown]; Region: COG5563
216591008356	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008357	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591008358	S-adenosylmethionine binding site [chemical binding]; other site
216591008359	HMMPfam hit to PF08242, Methyltransferase domain, score 0.00013
216591008360	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
216591008361	SNARE associated Golgi protein; Region: SNARE_assoc; pfam09335
216591008362	5 probable transmembrane helices predicted for BCAL1683 by TMHMM2.0 at aa 5-27, 34-56, 61-83, 120-139 and 149-171
216591008363	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008364	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591008365	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591008366	active site
216591008367	phosphorylation site [posttranslational modification]
216591008368	intermolecular recognition site; other site
216591008369	dimerization interface [polypeptide binding]; other site
216591008370	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591008371	DNA binding site [nucleotide binding]
216591008372	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.9e-33
216591008373	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.6e-24
216591008374	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591008375	dimer interface [polypeptide binding]; other site
216591008376	phosphorylation site [posttranslational modification]
216591008377	Histidine kinase-like ATPase domain; Region: HATPase_c_2; pfam13581
216591008378	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591008379	ATP binding site [chemical binding]; other site
216591008380	Mg2+ binding site [ion binding]; other site
216591008381	G-X-G motif; other site
216591008382	2 probable transmembrane helices predicted for BCAL1685 by TMHMM2.0 at aa 10-32 and 157-179
216591008383	HMMPfam hit to PF00672, HAMP domain, score 4e-08
216591008384	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.1e-12
216591008385	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.7e-30
216591008386	1 probable transmembrane helix predicted for BCAL1687 by TMHMM2.0 at aa 5-27
216591008387	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008388	extracytoplasmic-function sigma-70 factor; Validated; Region: PRK07037
216591008389	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591008390	Sigma-70, region 4; Region: Sigma70_r4_2; pfam08281
216591008391	HMMPfam hit to PF04542, Sigma-70 region, score 9.6e-12
216591008392	HMMPfam hit to PF08281, Sigma-70, region, score 1.7e-06
216591008393	HMMPfam hit to PF04545, Sigma-70, region, score 0.0025
216591008394	Predicted helix-turn-helix motif with score 1137.000, SD 3.06 at aa 171-192, sequence ETLQTAARALNVSQTLVHFMVR
216591008395	MbtH-like protein; Region: MbtH; cl01279
216591008396	HMMPfam hit to PF03621, MbtH-like protein, score 1.6e-29
216591008397	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cl00184
216591008398	HMMPfam hit to PF02668, Taurine catabolism dioxygenase TauD, TfdA fa, score 7.1e-09
216591008399	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
216591008400	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
216591008401	Walker A/P-loop; other site
216591008402	ATP binding site [chemical binding]; other site
216591008403	Q-loop/lid; other site
216591008404	ABC transporter signature motif; other site
216591008405	Walker B; other site
216591008406	D-loop; other site
216591008407	H-loop/switch region; other site
216591008408	HMMPfam hit to PF00005, ABC transporter, score 5.4e-57
216591008409	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008410	PS00211 ABC transporters family signature.
216591008411	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
216591008412	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
216591008413	ABC-ATPase subunit  interface; other site
216591008414	dimer interface [polypeptide binding]; other site
216591008415	putative PBP binding regions; other site
216591008416	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
216591008417	ABC-ATPase subunit  interface; other site
216591008418	dimer interface [polypeptide binding]; other site
216591008419	putative PBP binding regions; other site
216591008420	14 probable transmembrane helices predicted for BCAL1692 by TMHMM2.0 at aa 20-42, 68-90, 103-125, 129-150, 157-179, 249-271, 284-304, 314-336, 423-445, 477-499, 506-528, 597-619, 639-661 and 666-688
216591008421	HMMPfam hit to PF01032, FecCD transport family, score 1.7e-34
216591008422	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008423	HMMPfam hit to PF01032, FecCD transport family, score 2.9e-69
216591008424	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008425	siderophore-iron reductase FhuF; Region: Fe_III_red_FhuF; TIGR03951
216591008426	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
216591008427	FhuF 2Fe-2S C-terminal domain; Region: FhuF_C; pfam11575
216591008428	HMMPfam hit to PF06276, Ferric iron reductase protein FhuF, score 2.1e-12
216591008429	Fe3+-siderophore binding domain FhuD.  These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins...; Region: FhuD; cd01146
216591008430	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
216591008431	siderophore binding site; other site
216591008432	HMMPfam hit to PF01497, Periplasmic binding protein, score 1.3e-16
216591008433	cyclic peptide transporter; Region: cyc_pep_trnsptr; TIGR01194
216591008434	ATP-binding cassette domain of multidrug resistance protein-like transporters; Region: ABCC_MRP_Like; cd03228
216591008435	Walker A/P-loop; other site
216591008436	ATP binding site [chemical binding]; other site
216591008437	Q-loop/lid; other site
216591008438	ABC transporter signature motif; other site
216591008439	Walker B; other site
216591008440	D-loop; other site
216591008441	H-loop/switch region; other site
216591008442	HMMPfam hit to PF00005, ABC transporter, score 4.3e-45
216591008443	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008444	6 probable transmembrane helices predicted for BCAL1695 by TMHMM2.0 at aa 34-56, 71-93, 139-158, 163-185, 253-275 and 285-307
216591008445	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008446	The adenylation domain of nonribosomal peptide synthetases (NRPS); Region: A_NRPS; cd05930
216591008447	acyl-activating enzyme (AAE) consensus motif; other site
216591008448	AMP binding site [chemical binding]; other site
216591008449	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
216591008450	Condensation domain; Region: Condensation; pfam00668
216591008451	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
216591008452	HxxPF-repeated domain; Region: HxxPF_rpt; pfam13745
216591008453	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591008454	The adenylation domain of nonribosomal peptide synthetases (NRPS); Region: A_NRPS; cd05930
216591008455	acyl-activating enzyme (AAE) consensus motif; other site
216591008456	AMP binding site [chemical binding]; other site
216591008457	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
216591008458	Condensation domain; Region: Condensation; pfam00668
216591008459	non-ribosomal peptide synthase domain TIGR01720; Region: NRPS-para261
216591008460	Condensation domain; Region: Condensation; pfam00668
216591008461	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
216591008462	The adenylation domain of nonribosomal peptide synthetases (NRPS); Region: A_NRPS; cd05930
216591008463	acyl-activating enzyme (AAE) consensus motif; other site
216591008464	AMP binding site [chemical binding]; other site
216591008465	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
216591008466	HMMPfam hit to PF00501, AMP-binding enzyme, score 4.2e-125
216591008467	PS00455 Putative AMP-binding domain signature.
216591008468	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 1.3e-07
216591008469	HMMPfam hit to PF00668, Condensation domain, score 3.3e-80
216591008470	HMMPfam hit to PF00501, AMP-binding enzyme, score 3.5e-129
216591008471	PS00455 Putative AMP-binding domain signature.
216591008472	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 1.5e-18
216591008473	PS00012 Phosphopantetheine attachment site.
216591008474	HMMPfam hit to PF00668, Condensation domain, score 6.5e-43
216591008475	HMMPfam hit to PF00668, Condensation domain, score 1.5e-59
216591008476	HMMPfam hit to PF00501, AMP-binding enzyme, score 2.4e-169
216591008477	PS00455 Putative AMP-binding domain signature.
216591008478	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 2.1e-13
216591008479	Condensation domain; Region: Condensation; pfam00668
216591008480	HxxPF-repeated domain; Region: HxxPF_rpt; pfam13745
216591008481	The adenylation domain of nonribosomal peptide synthetases (NRPS); Region: A_NRPS; cd05930
216591008482	amino acid adenylation domain; Region: AA-adenyl-dom; TIGR01733
216591008483	acyl-activating enzyme (AAE) consensus motif; other site
216591008484	AMP binding site [chemical binding]; other site
216591008485	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
216591008486	Condensation domain; Region: Condensation; pfam00668
216591008487	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
216591008488	HxxPF-repeated domain; Region: HxxPF_rpt; pfam13745
216591008489	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
216591008490	HMMPfam hit to PF00668, Condensation domain, score 1.4e-78
216591008491	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591008492	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.8e-128
216591008493	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 8.1e-16
216591008494	PS00012 Phosphopantetheine attachment site.
216591008495	HMMPfam hit to PF00668, Condensation domain, score 5.7e-43
216591008496	Acetyltransferase (GNAT) domain; Region: Acetyltransf_8; pfam13523
216591008497	Siderophore biosynthesis protein domain; Region: AlcB; smart01006
216591008498	L-lysine 6-monooxygenase (NADPH-requiring); Region: K_oxygenase; pfam13434
216591008499	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591008500	ferrichrome outer membrane transporter; Provisional; Region: PRK10044
216591008501	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591008502	N-terminal plug; other site
216591008503	ligand-binding site [chemical binding]; other site
216591008504	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 1.4e-21
216591008505	HMMPfam hit to PF00593, TonB dependent receptor, score 8.2e-24
216591008506	Formyltransferase, catalytic core domain; Region: FMT_core; cl00395
216591008507	catalytic site [active]
216591008508	Acetyltransferase (GNAT) domain; Region: Acetyltransf_8; pfam13523
216591008509	Siderophore biosynthesis protein domain; Region: AlcB; smart01006
216591008510	Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473
216591008511	M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666
216591008512	metal binding site [ion binding]; metal-binding site
216591008513	putative dimer interface [polypeptide binding]; other site
216591008514	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 2.2e-73
216591008515	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 1.9e-09
216591008516	cobyrinic acid a,c-diamide synthase; Validated; Region: PRK01077
216591008517	Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase; Region: GATase1_CobB; cd03130
216591008518	catalytic triad [active]
216591008519	HMMPfam hit to PF07685, CobB/CobQ-like glutamine amidotransferase do, score 6.7e-36
216591008520	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 2.8e-24
216591008521	ATP:corrinoid adenosyltransferase [Coenzyme metabolism]; Region: BtuR; COG2109
216591008522	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer; Region: CobA_CobO_BtuR; cd00561
216591008523	homodimer interface [polypeptide binding]; other site
216591008524	Walker A motif; other site
216591008525	ATP binding site [chemical binding]; other site
216591008526	hydroxycobalamin binding site [chemical binding]; other site
216591008527	Walker B motif; other site
216591008528	HMMPfam hit to PF02572, ATP:corrinoid adenosyltransferase BtuR, score 1.1e-89
216591008529	cobalamin biosynthesis protein CbiG; Provisional; Region: PRK07027
216591008530	Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); Region: SUMT; cd11642
216591008531	active site
216591008532	SAM binding site [chemical binding]; other site
216591008533	homodimer interface [polypeptide binding]; other site
216591008534	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 3.2e-76
216591008535	PS00839 Uroporphyrin-III C-methyltransferase signature 1.
216591008536	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
216591008537	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591008538	N-terminal plug; other site
216591008539	ligand-binding site [chemical binding]; other site
216591008540	HMMPfam hit to PF00593, TonB dependent receptor, score 2.5e-32
216591008541	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 3.1e-22
216591008542	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008543	cobalamin biosynthesis protein CobW; Region: CobW; TIGR02475
216591008544	CobW/HypB/UreG, nucleotide-binding domain; Region: cobW; pfam02492
216591008545	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; pfam07683
216591008546	HMMPfam hit to PF02492, CobW/HypB/UreG, nucleotide-binding domain, score 2e-85
216591008547	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008548	HMMPfam hit to PF07683, Cobalamin synthesis protein cobW C-terminal, score 2.6e-25
216591008549	cobaltochelatase subunit CobN; Reviewed; Region: cobN; PRK05989
216591008550	CobN subunit of cobaltochelatase, bchH and chlH subunits of magnesium chelatases, and similar proteins; Region: CobN_like; cd10150
216591008551	CobN subunit of cobaltochelatase, bchH and chlH subunits of magnesium chelatases, and similar proteins; Region: CobN_like; cd10150
216591008552	HMMPfam hit to PF02514, CobN/Magnesium Chelatase, score 0
216591008553	Mg-protoporyphyrin IX chelatase; Region: chlI; CHL00081
216591008554	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591008555	Walker A motif; other site
216591008556	ATP binding site [chemical binding]; other site
216591008557	Walker B motif; other site
216591008558	arginine finger; other site
216591008559	HMMPfam hit to PF01078, Magnesium chelatase, subunit ChlI, score 2.5e-06
216591008560	HMMPfam hit to PF07728, ATPase family associated with various ce, score 2.1e-05
216591008561	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
216591008562	metal ion-dependent adhesion site (MIDAS); other site
216591008563	Uncharacterized BCR, YaiI/YqxD family COG1671; Region: DUF188; pfam02639
216591008564	HMMPfam hit to PF02639, Uncharacterized BCR, YaiI/YqxD family COG167, score 1.4e-57
216591008565	Domain of unknown function (DUF1993); Region: DUF1993; pfam09351
216591008566	Predicted protein tyrosine phosphatase [General function prediction only]; Region: COG4551
216591008567	active site
216591008568	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_10; cd04667
216591008569	nudix motif; other site
216591008570	HMMPfam hit to PF00293, NUDIX domain, score 9.4e-21
216591008571	PS00893 mutT domain signature.
216591008572	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591008573	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591008574	HMMPfam hit to PF02515, CoA-transferase family III, score 1.1e-52
216591008575	H+/citrate symporter [Energy production and conversion]; Region: CitM; COG2851
216591008576	Citrate transporter; Region: CitMHS; pfam03600
216591008577	11 probable transmembrane helices predicted for BCAL1719 by TMHMM2.0 at aa 35-54, 59-78, 91-113, 138-160, 173-192, 207-229, 267-286, 290-307, 320-342, 409-431 and 444-466
216591008578	HMMPfam hit to PF03600, Citrate transporter, score 4.6e-87
216591008579	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591008580	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591008581	active site
216591008582	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal doma, score 9e-08
216591008583	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 1e-21
216591008584	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 3.7e-42
216591008585	Predicted helix-turn-helix motif with score 1057.000, SD 2.79 at aa 246-267, sequence ERILIAAEAIGLGQAALRRATQ
216591008586	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 3.2e-13
216591008587	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591008588	IclR helix-turn-helix domain; Region: HTH_IclR; pfam09339
216591008589	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591008590	HMMPfam hit to PF02082, Transcriptional regulator, score 0.0015
216591008591	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 2.1e-09
216591008592	PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain.  Members of this domain family are found not only in...; Region: GH18_PF-ChiA-like; cd06543
216591008593	active site
216591008594	Chitin-binding domain of chitinase C; Region: ChiC_BD; cd12215
216591008595	aromatic chitin/cellulose binding site residues [chemical binding]; other site
216591008596	Chitin-binding domain of chitinase C; Region: ChiC_BD; cd12215
216591008597	aromatic chitin/cellulose binding site residues [chemical binding]; other site
216591008598	HMMPfam hit to PF02839, Carbohydrate binding domain, score 1e-14
216591008599	HMMPfam hit to PF02839, Carbohydrate binding domain, score 4.9e-16
216591008600	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008601	1 probable transmembrane helix predicted for BCAL1722 by TMHMM2.0 at aa 13-35
216591008602	Cobalamin biosynthesis protein CbiG [Coenzyme metabolism]; Region: CbiG; COG2073
216591008603	Cobalamin synthesis G N-terminal; Region: CbiG_N; pfam11760
216591008604	Cobalamin biosynthesis central region; Region: CbiG_mid; pfam11761
216591008605	Precorrin-3B C(17)-methyltransferase (CobJ/CbiH); Region: Precorrin_3B_C17_MT; cd11646
216591008606	active site
216591008607	SAM binding site [chemical binding]; other site
216591008608	homodimer interface [polypeptide binding]; other site
216591008609	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 2.5e-42
216591008610	HMMPfam hit to PF01890, CbiG, score 0.004
216591008611	Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Region: Precorrin_2_C20_MT; cd11645
216591008612	active site
216591008613	SAM binding site [chemical binding]; other site
216591008614	homodimer interface [polypeptide binding]; other site
216591008615	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 1e-32
216591008616	precorrin-8X methylmutase; Reviewed; Region: cobH; PRK08285
216591008617	Precorrin-8X methylmutase; Region: CbiC; pfam02570
216591008618	HMMPfam hit to PF02570, Precorrin-8X methylmutase, score 1e-66
216591008619	precorrin-3B synthase; Region: CobG; TIGR02435
216591008620	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
216591008621	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
216591008622	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008623	HMMPfam hit to PF03460, Nitrite/Sulfite reductase ferredoxin-lik, score 1e-07
216591008624	HMMPfam hit to PF01077, Nitrite and sulphite reductase 4Fe-4S do, score 1.4e-10
216591008625	HMMPfam hit to PF03460, Nitrite/Sulfite reductase ferredoxin-lik, score 2.1e-10
216591008626	Precorrin-6Y methyltransferase, the cobalamin biosynthesis enzyme CbiE; Region: Precorrin-6Y-methylase; cd11644
216591008627	active site
216591008628	putative homodimer interface [polypeptide binding]; other site
216591008629	SAM binding site [chemical binding]; other site
216591008630	Precorrin-6B methylase 2 [Coenzyme metabolism]; Region: CobL; COG2242
216591008631	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; Region: CbiT; TIGR02469
216591008632	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 3.9e-14
216591008633	PS00211 ABC transporters family signature.
216591008634	cobalt-precorrin-6A synthase; Reviewed; Region: cbiD; PRK00075
216591008635	HMMPfam hit to PF01888, CbiD, score 9.4e-84
216591008636	cobalt-precorrin-6x reductase; Reviewed; Region: PRK08057
216591008637	HMMPfam hit to PF02571, Precorrin-6x reductase CbiJ/CobK, score 1.4e-20
216591008638	Precorrin-4 C11-methyltransferase (CbiF/CobM); Region: Precorrin-4_C11-MT; cd11641
216591008639	active site
216591008640	SAM binding site [chemical binding]; other site
216591008641	homodimer interface [polypeptide binding]; other site
216591008642	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 2.1e-58
216591008643	PS00839 Uroporphyrin-III C-methyltransferase signature 1.
216591008644	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008645	Cyanate permease [Inorganic ion transport and metabolism]; Region: CynX; COG2807
216591008646	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591008647	putative substrate translocation pore; other site
216591008648	12 probable transmembrane helices predicted for BCAL1731 by TMHMM2.0 at aa 7-26, 41-63, 70-89, 99-121, 133-155, 159-181, 210-232, 242-264, 273-292, 297-319, 331-353 and 363-382
216591008649	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.4e-22
216591008650	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008651	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008652	MarR family; Region: MarR_2; cl17246
216591008653	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591008654	HMMPfam hit to PF01047, MarR family, score 1e-14
216591008655	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591008656	GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources...; Region: GST_N_Ure2p_like; cd03048
216591008657	C-terminal domain interface [polypeptide binding]; other site
216591008658	GSH binding site (G-site) [chemical binding]; other site
216591008659	dimer interface [polypeptide binding]; other site
216591008660	C-terminal, alpha helical domain of Ure2p and related Glutathione S-transferase-like proteins; Region: GST_C_Ure2p_like; cd03178
216591008661	dimer interface [polypeptide binding]; other site
216591008662	N-terminal domain interface [polypeptide binding]; other site
216591008663	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 2.5e-08
216591008664	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 8.1e-13
216591008665	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591008666	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591008667	trimer interface [polypeptide binding]; other site
216591008668	eyelet of channel; other site
216591008669	HMMPfam hit to PF00267, Gram-negative porin, score 0.00066
216591008670	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591008671	AAA domain; Region: AAA_22; pfam13401
216591008672	AAA ATPase domain; Region: AAA_16; pfam13191
216591008673	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591008674	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591008675	DNA binding residues [nucleotide binding]
216591008676	dimerization interface [polypeptide binding]; other site
216591008677	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 2.1e-17
216591008678	Predicted helix-turn-helix motif with score 1382.000, SD 3.89 at aa 848-869, sequence LSNKEIAVALAVGEETVKWHLK
216591008679	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008680	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591008681	quinone oxidoreductase, NADPH-dependent; Provisional; Region: PRK10754
216591008682	Quinone oxidoreductase (QOR); Region: QOR2; cd05286
216591008683	NADP binding site [chemical binding]; other site
216591008684	dimer interface [polypeptide binding]; other site
216591008685	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 9.2e-18
216591008686	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.4e-43
216591008687	PS01162 Quinone oxidoreductase / zeta-crystallin signature.
216591008688	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cl00184
216591008689	Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: TauD; COG2175
216591008690	HMMPfam hit to PF02668, Taurine catabolism dioxygenase TauD, TfdA fa, score 9.3e-76
216591008691	Prokaryotic protein of unknown function (DUF849); Region: DUF849; pfam05853
216591008692	HMMPfam hit to PF05853, Prokaryotic protein of unknown function (DUF, score 3.4e-13
216591008693	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591008694	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591008695	putative substrate translocation pore; other site
216591008696	12 probable transmembrane helices predicted for BCAL1740 by TMHMM2.0 at aa 20-42, 62-84, 91-113, 123-145, 152-174, 179-201, 240-262, 277-299, 311-333, 337-359, 372-394 and 404-426
216591008697	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-39
216591008698	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008699	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008700	Serine hydrolase; Region: Ser_hydrolase; pfam06821
216591008701	HMMPfam hit to PF06821, Alpha/Beta hydrolase family of unknown funct, score 2.5e-48
216591008702	ABC-type uncharacterized transport system, periplasmic component [General function prediction only]; Region: COG4134
216591008703	hypothetical protein; Provisional; Region: PRK11622
216591008704	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 0.013
216591008705	1 probable transmembrane helix predicted for BCAL1742 by TMHMM2.0 at aa 13-35
216591008706	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
216591008707	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591008708	Walker A/P-loop; other site
216591008709	ATP binding site [chemical binding]; other site
216591008710	Q-loop/lid; other site
216591008711	ABC transporter signature motif; other site
216591008712	Walker B; other site
216591008713	D-loop; other site
216591008714	H-loop/switch region; other site
216591008715	TOBE domain; Region: TOBE_2; pfam08402
216591008716	HMMPfam hit to PF00005, ABC transporter, score 7.9e-59
216591008717	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008718	PS00211 ABC transporters family signature.
216591008719	HMMPfam hit to PF08402, TOBE domain, score 0.0045
216591008720	HMMPfam hit to PF03459, TOBE domain, score 0.00033
216591008721	ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555
216591008722	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008723	dimer interface [polypeptide binding]; other site
216591008724	conserved gate region; other site
216591008725	putative PBP binding loops; other site
216591008726	ABC-ATPase subunit interface; other site
216591008727	6 probable transmembrane helices predicted for BCAL1744 by TMHMM2.0 at aa 13-35, 69-91, 103-125, 153-175, 202-224 and 257-279
216591008728	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 9e-12
216591008729	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591008730	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008731	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
216591008732	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008733	dimer interface [polypeptide binding]; other site
216591008734	conserved gate region; other site
216591008735	putative PBP binding loops; other site
216591008736	ABC-ATPase subunit interface; other site
216591008737	7 probable transmembrane helices predicted for BCAL1745 by TMHMM2.0 at aa 12-34, 71-93, 105-127, 137-159, 180-202, 212-231 and 244-263
216591008738	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.7e-17
216591008739	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008740	1 probable transmembrane helix predicted for BCAL1747A by TMHMM2.0 at aa 12-29
216591008741	Putative D-isomer specific 2-hydroxyacid dehydrogenases; Region: 2-Hacid_dh_4; cd12162
216591008742	glycerate dehydrogenase; Provisional; Region: PRK06487
216591008743	putative ligand binding site [chemical binding]; other site
216591008744	putative NAD binding site [chemical binding]; other site
216591008745	catalytic site [active]
216591008746	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 3.6e-22
216591008747	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 3.3e-72
216591008748	PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
216591008749	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591008750	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591008751	HMMPfam hit to PF02515, CoA-transferase family III, score 1.9e-73
216591008752	3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; Region: DRE_TIM_HMGL; cd07938
216591008753	active site
216591008754	catalytic residues [active]
216591008755	metal binding site [ion binding]; metal-binding site
216591008756	HMMPfam hit to PF00682, HMGL-like, score 6.3e-55
216591008757	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008758	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_2; cd07253
216591008759	dimer interface [polypeptide binding]; other site
216591008760	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591008761	metal binding site [ion binding]; metal-binding site
216591008762	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 4e-06
216591008763	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591008764	PS00120 Lipases, serine active site.
216591008765	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591008766	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591008767	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421
216591008768	putative dimerization interface [polypeptide binding]; other site
216591008769	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-17
216591008770	Predicted helix-turn-helix motif with score 1146.000, SD 3.09 at aa 43-64, sequence GSLTKAAEHGQLTLSAVSKRIA
216591008771	PS00044 Bacterial regulatory proteins, lysR family signature.
216591008772	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.9e-33
216591008773	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591008774	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591008775	benzoate transport; Region: 2A0115; TIGR00895
216591008776	putative substrate translocation pore; other site
216591008777	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591008778	putative substrate translocation pore; other site
216591008779	HMMPfam hit to PF00083, Sugar (and other) transporter, score 4.7e-08
216591008780	12 probable transmembrane helices predicted for BCAL1754 by TMHMM2.0 at aa 12-34, 54-73, 82-100, 110-132, 139-161, 166-188, 257-279, 294-316, 321-340, 344-363, 384-403 and 407-429
216591008781	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 8.7e-32
216591008782	PS00217 Sugar transport proteins signature 2.
216591008783	PS00216 Sugar transport proteins signature 1.
216591008784	RNA ligase; Region: RNA_ligase; pfam09414
216591008785	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
216591008786	Zn2+ binding site [ion binding]; other site
216591008787	Mg2+ binding site [ion binding]; other site
216591008788	AAA domain; Region: AAA_33; pfam13671
216591008789	HMMPfam hit to PF01966, HD domain, score 2.8e-05
216591008790	1 probable transmembrane helix predicted for BCAL1758 by TMHMM2.0 at aa 177-199
216591008791	Nitronate monooxygenase; Region: NMO; pfam03060
216591008792	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
216591008793	FMN binding site [chemical binding]; other site
216591008794	substrate binding site [chemical binding]; other site
216591008795	putative catalytic residue [active]
216591008796	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, score 2.3e-79
216591008797	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008798	Uncharacterized conserved protein [Function unknown]; Region: COG3791
216591008799	HMMPfam hit to PF04828, Protein of unknown function (DUF636), score 1.2e-17
216591008800	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591008801	MarR family; Region: MarR; pfam01047
216591008802	HMMPfam hit to PF01047, MarR family, score 1.4e-21
216591008803	Predicted acetyltransferase [General function prediction only]; Region: COG3393
216591008804	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591008805	Coenzyme A binding pocket [chemical binding]; other site
216591008806	HMMPfam hit to PF08445, FR47-like protein, score 7.9e-16
216591008807	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 8.5e-13
216591008808	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591008809	1 probable transmembrane helix predicted for BCAL1763 by TMHMM2.0 at aa 5-24
216591008810	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591008811	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591008812	peroxiredoxin, Ohr subfamily; Region: organ_hyd_perox; TIGR03561
216591008813	HMMPfam hit to PF02566, OsmC-like protein, score 4.9e-36
216591008814	alpha-ketoglutarate transporter; Provisional; Region: PRK10406
216591008815	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591008816	putative substrate translocation pore; other site
216591008817	HMMPfam hit to PF00083, Sugar (and other) transporter, score 1.7e-21
216591008818	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.9e-18
216591008819	11 probable transmembrane helices predicted for BCAL1767 by TMHMM2.0 at aa 66-88, 95-114, 119-141, 162-184, 199-216, 248-270, 285-307, 314-336, 341-363, 376-398 and 408-427
216591008820	PS00217 Sugar transport proteins signature 2.
216591008821	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008822	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591008823	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591008824	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591008825	dimerization interface [polypeptide binding]; other site
216591008826	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-33
216591008827	PS00215 Mitochondrial energy transfer proteins signature.
216591008828	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.2e-17
216591008829	PS00044 Bacterial regulatory proteins, lysR family signature.
216591008830	Predicted helix-turn-helix motif with score 1347.000, SD 3.77 at aa 19-40, sequence ANFSTAAQRLHLSVSSLSKRIN
216591008831	Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]; Region: idi; COG1304
216591008832	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl17186
216591008833	phosphate binding site [ion binding]; other site
216591008834	HMMPfam hit to PF01070, FMN-dependent dehydrogenase, score 1.1e-112
216591008835	PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site.
216591008836	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
216591008837	Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to...; Region: Gn_AT_II; cl00319
216591008838	HMMPfam hit to PF01738, Dienelactone hydrolase family, score 1.7e-58
216591008839	short chain dehydrogenase; Provisional; Region: PRK08265
216591008840	classical (c) SDRs; Region: SDR_c; cd05233
216591008841	NAD(P) binding site [chemical binding]; other site
216591008842	active site
216591008843	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.2e-22
216591008844	PS00061 Short-chain dehydrogenases/reductases family signature.
216591008845	Isochorismatase family; Region: Isochorismatase; pfam00857
216591008846	Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cd00431
216591008847	catalytic triad [active]
216591008848	conserved cis-peptide bond; other site
216591008849	HMMPfam hit to PF00857, Isochorismatase family, score 9.4e-11
216591008850	Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the...; Region: ring_hydroxylating_dioxygenases_beta; cd00667
216591008851	inter-subunit interface; other site
216591008852	HMMPfam hit to PF00866, Ring hydroxylating beta subunit, score 1.7e-29
216591008853	anthranilate 1,2-dioxygenase, large subunit; Region: anthran_1_2_A; TIGR03228
216591008854	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cl00938
216591008855	iron-sulfur cluster [ion binding]; other site
216591008856	[2Fe-2S] cluster binding site [ion binding]; other site
216591008857	C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_AntDO-like; cd08879
216591008858	putative alpha subunit interface [polypeptide binding]; other site
216591008859	putative active site [active]
216591008860	putative substrate binding site [chemical binding]; other site
216591008861	Fe binding site [ion binding]; other site
216591008862	HMMPfam hit to PF00848, Ring hydroxylating alpha subunit (cat, score 4e-07
216591008863	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 5.2e-23
216591008864	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
216591008865	Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal  ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur; Region: PDR_like; cd06185
216591008866	FMN-binding pocket [chemical binding]; other site
216591008867	flavin binding motif; other site
216591008868	phosphate binding motif [ion binding]; other site
216591008869	beta-alpha-beta structure motif; other site
216591008870	NAD binding pocket [chemical binding]; other site
216591008871	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591008872	catalytic loop [active]
216591008873	iron binding site [ion binding]; other site
216591008874	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 3.7e-16
216591008875	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591008876	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 8.8e-12
216591008877	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 3.5e-06
216591008878	HMMPfam hit to PF08021, Siderophore-interacting FAD-binding dom, score 0.00081
216591008879	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591008880	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591008881	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00086
216591008882	PS00041 Bacterial regulatory proteins, araC family signature.
216591008883	Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]; Region: CirA; COG1629
216591008884	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl17244
216591008885	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl17244
216591008886	HMMPfam hit to PF00593, TonB dependent receptor, score 7.9e-25
216591008887	PS01156 TonB-dependent receptor proteins signature 2.
216591008888	PS00116 DNA polymerase family B signature.
216591008889	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 1.7e-11
216591008890	1 probable transmembrane helix predicted for BCAL1777a by TMHMM2.0 at aa 21-43
216591008891	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915
216591008892	Protein export membrane protein; Region: SecD_SecF; cl14618
216591008893	PS00044 Bacterial regulatory proteins, lysR family signature.
216591008894	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591008895	11 probable transmembrane helices predicted for BCAL1778 by TMHMM2.0 at aa 10-32, 340-359, 369-391, 437-459, 469-491, 544-566, 873-892, 897-919, 929-946, 974-996 and 1006-1028
216591008896	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008897	ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]; Region: COG4172
216591008898	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591008899	Walker A/P-loop; other site
216591008900	ATP binding site [chemical binding]; other site
216591008901	Q-loop/lid; other site
216591008902	ABC transporter signature motif; other site
216591008903	Walker B; other site
216591008904	D-loop; other site
216591008905	H-loop/switch region; other site
216591008906	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591008907	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591008908	Walker A/P-loop; other site
216591008909	ATP binding site [chemical binding]; other site
216591008910	Q-loop/lid; other site
216591008911	ABC transporter signature motif; other site
216591008912	Walker B; other site
216591008913	D-loop; other site
216591008914	H-loop/switch region; other site
216591008915	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591008916	HMMPfam hit to PF00005, ABC transporter, score 3.5e-61
216591008917	PS00211 ABC transporters family signature.
216591008918	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008919	HMMPfam hit to PF00005, ABC transporter, score 1.1e-54
216591008920	PS00211 ABC transporters family signature.
216591008921	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008922	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
216591008923	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4239
216591008924	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008925	dimer interface [polypeptide binding]; other site
216591008926	conserved gate region; other site
216591008927	putative PBP binding loops; other site
216591008928	ABC-ATPase subunit interface; other site
216591008929	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.4e-47
216591008930	4 probable transmembrane helices predicted for BCAL1780 by TMHMM2.0 at aa 38-60, 165-187, 208-230 and 325-347
216591008931	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4174
216591008932	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591008933	dimer interface [polypeptide binding]; other site
216591008934	conserved gate region; other site
216591008935	putative PBP binding loops; other site
216591008936	ABC-ATPase subunit interface; other site
216591008937	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.5e-47
216591008938	6 probable transmembrane helices predicted for BCAL1781 by TMHMM2.0 at aa 9-31, 122-144, 156-178, 208-230, 267-289 and 317-339
216591008939	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
216591008940	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_14; cd08497
216591008941	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 1.2e-55
216591008942	CDS contains a nonsense mutation (amber) after codon 799. Similar to Xanthomonas axonopodis pv. citri TonB-dependent receptor BtuB UniProt:Q8PGK3 (EMBL:AE012011) (890 aa) fasta scores: E()=2.5e-101, 37.627% id in 885 aa, and to Burkholderia cenocepacia HI2424 TonB-dependent receptor UniProt:Q4LK07 (EMBL:AAHL01000064) (941 aa) fasta scores: E()=0, 99.150% id in 941 aa
216591008943	HMMPfam hit to PF00593, TonB dependent receptor, score 1.5e-25
216591008944	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 3.4e-15
216591008945	DNA-binding transcriptional repressor PuuR; Provisional; Region: PRK09943
216591008946	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591008947	non-specific DNA binding site [nucleotide binding]; other site
216591008948	salt bridge; other site
216591008949	sequence-specific DNA binding site [nucleotide binding]; other site
216591008950	Cupin domain; Region: Cupin_2; pfam07883
216591008951	HMMPfam hit to PF07883, Cupin domain, score 1.4e-19
216591008952	HMMPfam hit to PF01381, Helix-turn-helix, score 2e-15
216591008953	Predicted helix-turn-helix motif with score 1423.000, SD 4.03 at aa 77-98, sequence LTLDETAGIAGISKPFLSQVER
216591008954	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591008955	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
216591008956	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
216591008957	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 1.2e-05
216591008958	1 probable transmembrane helix predicted for BCAL1787 by TMHMM2.0 at aa 20-42
216591008959	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
216591008960	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
216591008961	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 6.8e-13
216591008962	1 probable transmembrane helix predicted for BCAL1788 by TMHMM2.0 at aa 20-42
216591008963	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
216591008964	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 3.1e-41
216591008965	3 probable transmembrane helices predicted for BCAL1789 by TMHMM2.0 at aa 71-93, 178-200 and 225-247
216591008966	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591008967	Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]; Region: TonB; COG0810
216591008968	Gram-negative bacterial tonB protein; Region: TonB; pfam03544
216591008969	HMMPfam hit to PF03544, Gram-negative bacterial tonB protein, score 6.3e-06
216591008970	1 probable transmembrane helix predicted for BCAL1790 by TMHMM2.0 at aa 36-58
216591008971	YbaK-like.  The YbaK family of deacylase domains includes the INS amino acid-editing domain of  the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze...; Region: YbaK_like; cd04332
216591008972	putative deacylase active site [active]
216591008973	HMMPfam hit to PF04073, YbaK / prolyl-tRNA synthetases associated do, score 7.9e-05
216591008974	YciI-like protein; Reviewed; Region: PRK12866
216591008975	HMMPfam hit to PF03795, YCII-related domain, score 5.6e-11
216591008976	Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]; Region: CorA; COG0598
216591008977	Mycobacterium tuberculosis CorA-like subfamily; Region: MtCorA-like; cd12830
216591008978	oligomer interface [polypeptide binding]; other site
216591008979	metal binding site [ion binding]; metal-binding site
216591008980	metal binding site [ion binding]; metal-binding site
216591008981	putative Cl binding site [ion binding]; other site
216591008982	basic sphincter; other site
216591008983	hydrophobic gate; other site
216591008984	periplasmic entrance; other site
216591008985	HMMPfam hit to PF01544, CorA-like Mg2+ transporter protein, score 5.5e-46
216591008986	2 probable transmembrane helices predicted for BCAL1793 by TMHMM2.0 at aa 268-290 and 295-317
216591008987	Membrane bound YbgT-like protein; Region: YbgT_YccB; pfam08173
216591008988	HMMPfam hit to PF08173, Membrane bound YbgT-like protein, score 5e-12
216591008989	1 probable transmembrane helix predicted for BCAL1794 by TMHMM2.0 at aa 2-24
216591008990	AAA domain; Region: AAA_33; pfam13671
216591008991	Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cl17190
216591008992	active site
216591008993	PS00017 ATP/GTP-binding site motif A (P-loop).
216591008994	Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]; Region: LYS9; COG1748
216591008995	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591008996	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591008997	HMMPfam hit to PF03435, Saccharopine dehydrogenase, score 3.7e-77
216591008998	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 0.0025
216591008999	HMMPfam hit to PF02254, TrkA-N domain, score 2.8e-07
216591009000	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591009001	AsnC family; Region: AsnC_trans_reg; pfam01037
216591009002	HMMPfam hit to PF01037, AsnC family, score 1.8e-19
216591009003	LTXXQ motif family protein; Region: LTXXQ; pfam07813
216591009004	PGDYG protein; Region: PGDYG; pfam14083
216591009005	Protein of unknown function (DUF3022); Region: DUF3022; pfam11226
216591009006	Putative membrane peptidase family (DUF2324); Region: DUF2324; pfam10086
216591009007	7 probable transmembrane helices predicted for BCAL1801 by TMHMM2.0 at aa 6-28, 41-58, 71-93, 114-136, 175-197, 204-226 and 230-252
216591009008	PS00340 Growth factor and cytokines receptors family signature 2.
216591009009	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591009010	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591009011	DNA binding site [nucleotide binding]
216591009012	domain linker motif; other site
216591009013	Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR; Region: PBP1_RegR_EndR_KdgR_like; cd06283
216591009014	putative ligand binding site [chemical binding]; other site
216591009015	putative dimerization interface [polypeptide binding]; other site
216591009016	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591009017	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 3e-06
216591009018	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 8.6e-07
216591009019	Predicted helix-turn-helix motif with score 1673.000, SD 4.89 at aa 12-33, sequence ATISDVAREAGTGKTSVSRYLN
216591009020	bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional; Region: PRK15409
216591009021	D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); Region: GDH; cd05301
216591009022	dimerization interface [polypeptide binding]; other site
216591009023	ligand binding site [chemical binding]; other site
216591009024	NADP binding site [chemical binding]; other site
216591009025	catalytic site [active]
216591009026	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 4.1e-36
216591009027	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 5.3e-94
216591009028	PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
216591009029	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009030	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591009031	D-galactonate transporter; Region: 2A0114; TIGR00893
216591009032	putative substrate translocation pore; other site
216591009033	12 probable transmembrane helices predicted for BCAL1804 by TMHMM2.0 at aa 7-26, 51-73, 80-99, 104-126, 139-161, 166-188, 231-253, 263-285, 298-317, 322-344, 357-379 and 389-408
216591009034	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 9.6e-61
216591009035	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009036	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591009037	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
216591009038	substrate binding site [chemical binding]; other site
216591009039	ATP binding site [chemical binding]; other site
216591009040	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 3.3e-69
216591009041	PS00584 pfkB family of carbohydrate kinases signature 2.
216591009042	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009043	Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261
216591009044	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 3.8e-07
216591009045	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591009046	aminoethylphosphonate catabolism associated LysR family transcriptional regulator; Region: phn_lysR; TIGR03339
216591009047	C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold; Region: PBP2_CysL_like; cd08420
216591009048	putative dimerization interface [polypeptide binding]; other site
216591009049	HMMPfam hit to PF03466, LysR substrate binding domain, score 4e-47
216591009050	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.2e-20
216591009051	Predicted helix-turn-helix motif with score 1494.000, SD 4.28 at aa 16-37, sequence LNISHAAVALHLSQPAVSGQLR
216591009052	Predicted membrane protein [Function unknown]; Region: COG2855
216591009053	PS00041 Bacterial regulatory proteins, araC family signature.
216591009054	9 probable transmembrane helices predicted for BCAL1808 by TMHMM2.0 at aa 20-37, 42-64, 104-126, 136-155, 168-190, 235-252, 273-292, 302-324 and 331-353
216591009055	HMMPfam hit to PF03601, Conserved hypothetical protein, score 2.5e-105
216591009056	putative voltage-gated ClC-type chloride channel ClcB; Provisional; Region: PRK01862
216591009057	CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cd00400
216591009058	Cl- selectivity filter; other site
216591009059	Cl- binding residues [ion binding]; other site
216591009060	pore gating glutamate residue; other site
216591009061	dimer interface [polypeptide binding]; other site
216591009062	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cd02205
216591009063	10 probable transmembrane helices predicted for BCAL1809 by TMHMM2.0 at aa 37-54, 80-102, 178-200, 205-227, 248-270, 290-312, 319-341, 346-368, 380-402 and 412-431
216591009064	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009065	HMMPfam hit to PF00654, Voltage gated chloride channel, score 1.5e-33
216591009066	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009067	HMMPfam hit to PF00571, CBS domain pair, score 1.4e-12
216591009068	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591009069	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591009070	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591009071	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 4e-17
216591009072	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591009073	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591009074	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009075	HMMPfam hit to PF00529, HlyD family secretion protein, score 0.00029
216591009076	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
216591009077	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 1.5e-67
216591009078	12 probable transmembrane helices predicted for BCAL1812 by TMHMM2.0 at aa 21-43, 342-364, 369-388, 398-420, 432-454, 474-496, 538-560, 871-890, 897-919, 923-945, 966-988 and 998-1020
216591009079	PS00152 ATP synthase alpha and beta subunits signature.
216591009080	PS00589 PTS HPR component serine phosphorylation site signature.
216591009081	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591009082	1 probable transmembrane helix predicted for BCAL1813 by TMHMM2.0 at aa 13-32
216591009083	HMMPfam hit to PF02321, Outer membrane efflux protein, score 9.6e-19
216591009084	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.6e-32
216591009085	Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR; Region: HTH_NolA-AlbR; cd04788
216591009086	MerR HTH family regulatory protein; Region: MerR_1; pfam13411
216591009087	DNA binding residues [nucleotide binding]
216591009088	putative dimer interface [polypeptide binding]; other site
216591009089	TipAS antibiotic-recognition domain; Region: TipAS; pfam07739
216591009090	TipAS antibiotic-recognition domain; Region: TipAS; pfam07739
216591009091	Predicted helix-turn-helix motif with score 1227.000, SD 3.37 at aa 3-24, sequence LKVGELAKRSGLTVRTLHHYHA
216591009092	HMMPfam hit to PF00376, MerR family regulatory protein, score 1.5e-11
216591009093	HMMPfam hit to PF05583, Albicidin resistance domain, score 4.6e-12
216591009094	HMMPfam hit to PF05583, Albicidin resistance domain, score 2.7e-13
216591009095	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591009096	sequence-specific DNA binding site [nucleotide binding]; other site
216591009097	salt bridge; other site
216591009098	Predicted helix-turn-helix motif with score 1203.000, SD 3.28 at aa 16-37, sequence VRSKDLAAAVGITEQNLSLLKQ
216591009099	Protein of unknown function (DUF2975); Region: DUF2975; pfam11188
216591009100	4 probable transmembrane helices predicted for BCAL1816 by TMHMM2.0 at aa 13-35, 65-87, 117-139 and 149-171
216591009101	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009102	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009103	PAS fold; Region: PAS_4; pfam08448
216591009104	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591009105	putative active site [active]
216591009106	heme pocket [chemical binding]; other site
216591009107	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591009108	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
216591009109	Walker A motif; other site
216591009110	ATP binding site [chemical binding]; other site
216591009111	Walker B motif; other site
216591009112	arginine finger; other site
216591009113	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 0.0036
216591009114	Predicted helix-turn-helix motif with score 2218.000, SD 6.74 at aa 430-451, sequence GTRKALAEQLGLSERTLYRRMK
216591009115	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591009116	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 1.8e-123
216591009117	HMMPfam hit to PF07728, ATPase family associated with various, score 0.00055
216591009118	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591009119	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591009120	HMMPfam hit to PF08448, PAS fold, score 1.8e-21
216591009121	HMMPfam hit to PF00989, PAS fold, score 6.4e-05
216591009122	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
216591009123	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 1.8e-19
216591009124	Putative phosphatase (DUF442); Region: DUF442; cl17385
216591009125	pyridine nucleotide-disulfide oxidoreductase family protein; Region: Nterm_to_SelD; TIGR03169
216591009126	HMMPfam hit to PF04273, Protein of unknown function (DUF442), score 4.4e-42
216591009127	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0016
216591009128	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 0.00011
216591009129	HMMPfam hit to PF01925, Domain of unknown function DUF81, score 7.7e-22
216591009130	8 probable transmembrane helices predicted for BCAL1820 by TMHMM2.0 at aa 5-27, 42-61, 68-86, 91-113, 141-174, 189-211, 218-235 and 245-267
216591009131	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
216591009132	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591009133	dimer interface [polypeptide binding]; other site
216591009134	conserved gate region; other site
216591009135	putative PBP binding loops; other site
216591009136	ABC-ATPase subunit interface; other site
216591009137	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.8e-13
216591009138	6 probable transmembrane helices predicted for BCAL1821 by TMHMM2.0 at aa 9-31, 65-87, 100-122, 137-159, 180-202 and 239-261
216591009139	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591009140	PS00044 Bacterial regulatory proteins, lysR family signature.
216591009141	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591009142	dimer interface [polypeptide binding]; other site
216591009143	conserved gate region; other site
216591009144	putative PBP binding loops; other site
216591009145	ABC-ATPase subunit interface; other site
216591009146	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3e-21
216591009147	8 probable transmembrane helices predicted for BCAL1822 by TMHMM2.0 at aa 21-43, 66-88, 93-115, 125-147, 177-199, 219-241, 248-267 and 277-299
216591009148	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591009149	putrescine transporter ATP-binding subunit; Provisional; Region: potG; PRK11607
216591009150	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591009151	Walker A/P-loop; other site
216591009152	ATP binding site [chemical binding]; other site
216591009153	Q-loop/lid; other site
216591009154	ABC transporter signature motif; other site
216591009155	Walker B; other site
216591009156	D-loop; other site
216591009157	H-loop/switch region; other site
216591009158	TOBE domain; Region: TOBE_2; pfam08402
216591009159	HMMPfam hit to PF08402, TOBE domain, score 5.3e-19
216591009160	HMMPfam hit to PF00005, ABC transporter, score 2.5e-65
216591009161	PS00211 ABC transporters family signature.
216591009162	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009163	putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional; Region: PRK10682
216591009164	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
216591009165	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 2.5e-14
216591009166	Predicted Fe-S protein [General function prediction only]; Region: COG3313
216591009167	HMMPfam hit to PF06945, Protein of unknown function (DUF1289), score 9.1e-20
216591009168	Protein of unknown function (DUF1120); Region: DUF1120; cl05856
216591009169	HMMPfam hit to PF06551, Protein of unknown function (DUF1120), score 5.8e-28
216591009170	putative fimbrial chaperone protein; Provisional; Region: PRK09918
216591009171	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
216591009172	HMMPfam hit to PF00345, Gram-negative pili assembly chaperone, score 1.8e-12
216591009173	putative fimbrial outer membrane usher protein; Provisional; Region: PRK15304
216591009174	PapC N-terminal domain; Region: PapC_N; pfam13954
216591009175	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
216591009176	PapC C-terminal domain; Region: PapC_C; pfam13953
216591009177	HMMPfam hit to PF00577, Fimbrial Usher protein, score 1.4e-35
216591009178	Outer membrane protein W [Cell envelope biogenesis, outer membrane]; Region: OmpW; COG3047
216591009179	HMMPfam hit to PF03922, OmpW family, score 7.4e-50
216591009180	Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]; Region: COG2070
216591009181	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
216591009182	FMN binding site [chemical binding]; other site
216591009183	substrate binding site [chemical binding]; other site
216591009184	putative catalytic residue [active]
216591009185	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, score 8.5e-12
216591009186	Rhodococcus ruber 6-oxolauric acid dehydrogenase-like; Region: ALDH_CddD_SSP0762; cd07138
216591009187	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591009188	NAD binding site [chemical binding]; other site
216591009189	catalytic residues [active]
216591009190	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 9.1e-224
216591009191	PS00070 Aldehyde dehydrogenases cysteine active site.
216591009192	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591009193	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009194	hypothetical protein; Provisional; Region: PRK11667
216591009195	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009196	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009197	Catalytic NodB homology domain of rhizobial NodB-like proteins; Region: CE4_NodB_like_6s_7s; cd10917
216591009198	NodB motif; other site
216591009199	active site
216591009200	catalytic site [active]
216591009201	metal binding site [ion binding]; metal-binding site
216591009202	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 5e-18
216591009203	Phosphotransferase enzyme family; Region: APH; pfam01636
216591009204	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cl17270
216591009205	Cephalosporin hydroxylase; Region: CmcI; pfam04989
216591009206	HMMPfam hit to PF04989, Cephalosporin hydroxylase, score 1.4e-31
216591009207	Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]; Region: COG1819
216591009208	This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the...; Region: GT1_Gtf_like; cd03784
216591009209	active site
216591009210	TDP-binding site; other site
216591009211	acceptor substrate-binding pocket; other site
216591009212	homodimer interface [polypeptide binding]; other site
216591009213	HMMPfam hit to PF00201, UDP-glucoronosyl and UDP-glucosyl tra, score 2e-05
216591009214	HMMPfam hit to PF04101, Glycosyltransferase family, score 0.00077
216591009215	asparagine synthase (glutamine-hydrolyzing); Region: asn_synth_AEB; TIGR01536
216591009216	The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the...; Region: Asn_Synthase_B_C; cd01991
216591009217	HMMPfam hit to PF00733, Asparagine synthase, score 7.9e-17
216591009218	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591009219	FeS/SAM binding site; other site
216591009220	Phosphotransferase enzyme family; Region: APH; pfam01636
216591009221	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cl17270
216591009222	substrate binding site [chemical binding]; other site
216591009223	ABC transporter ATP-binding protein; Provisional; Region: PRK15064
216591009224	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591009225	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591009226	ABC transporter; Region: ABC_tran_2; pfam12848
216591009227	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591009228	HMMPfam hit to PF00005, ABC transporter, score 7.7e-42
216591009229	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009230	HMMPfam hit to PF00005, ABC transporter, score 1.1e-42
216591009231	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009232	Lipocalin-like domain; Region: Lipocalin_5; pfam13924
216591009233	Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]; Region: AsmA; COG2982
216591009234	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
216591009235	HMMPfam hit to PF05170, AsmA family, score 4.8e-104
216591009236	1 probable transmembrane helix predicted for BCAL1845 by TMHMM2.0 at aa 12-34
216591009237	ABC-type uncharacterized transport system, ATPase component [General function prediction only]; Region: COG4619
216591009238	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591009239	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591009240	Walker A/P-loop; other site
216591009241	Walker A/P-loop; other site
216591009242	ATP binding site [chemical binding]; other site
216591009243	Q-loop/lid; other site
216591009244	ABC transporter signature motif; other site
216591009245	Walker B; other site
216591009246	D-loop; other site
216591009247	H-loop/switch region; other site
216591009248	HMMPfam hit to PF00005, ABC transporter, score 9e-44
216591009249	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009250	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG0390
216591009251	HMMPfam hit to PF03649, Uncharacterised protein family (UPF0014), score 2.1e-49
216591009252	7 probable transmembrane helices predicted for BCAL1847 by TMHMM2.0 at aa 10-32, 39-61, 65-87, 99-121, 126-148, 191-213 and 223-245
216591009253	Periplasmic lysozyme inhibitor, I-type (PliI) and similar proteins; Region: PliI_like; cd09632
216591009254	dimer interface [polypeptide binding]; other site
216591009255	putative inhibitory loop; other site
216591009256	1 probable transmembrane helix predicted for BCAL1849 by TMHMM2.0 at aa 41-63
216591009257	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009258	Arginate lyase and other MDR family members; Region: AL_MDR; cd08252
216591009259	zinc-binding alcohol dehydrogenase family protein; Region: adh_fam_1; TIGR02817
216591009260	putative NAD(P) binding site [chemical binding]; other site
216591009261	dimer interface [polypeptide binding]; other site
216591009262	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 5.5e-19
216591009263	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 3.6e-14
216591009264	transcriptional activator TtdR; Provisional; Region: PRK09801
216591009265	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591009266	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591009267	putative effector binding pocket; other site
216591009268	dimerization interface [polypeptide binding]; other site
216591009269	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.6e-13
216591009270	PS00044 Bacterial regulatory proteins, lysR family signature.
216591009271	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.4e-51
216591009272	Domain of unknown function (DUF4072); Region: DUF4072; pfam13284
216591009273	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
216591009274	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591009275	motif II; other site
216591009276	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1.1e-23
216591009277	cystathionine beta-lyase; Provisional; Region: PRK07050
216591009278	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591009279	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591009280	catalytic residue [active]
216591009281	HMMPfam hit to PF01053, Cys/Met metabolism PLP-dependent enzy, score 1.4e-75
216591009282	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009283	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
216591009284	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591009285	substrate binding site [chemical binding]; other site
216591009286	ATP binding site [chemical binding]; other site
216591009287	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 4.9e-64
216591009288	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009289	ribosomal protein S12 methylthiotransferase; Provisional; Region: rimO; PRK14862
216591009290	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
216591009291	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591009292	FeS/SAM binding site; other site
216591009293	TRAM domain; Region: TRAM; cl01282
216591009294	HMMPfam hit to PF01938, TRAM domain, score 0.044
216591009295	HMMPfam hit to PF04055, Radical SAM superfamily, score 1.2e-27
216591009296	PS01278 Uncharacterized protein family UPF0004 signature.
216591009297	HMMPfam hit to PF00919, Uncharacterized protein family UPF0004, score 1.6e-34
216591009298	2 probable transmembrane helices predicted for BCAL1857 by TMHMM2.0 at aa 13-35 and 39-61
216591009299	RibD C-terminal domain; Region: RibD_C; cl17279
216591009300	Dihydrofolate reductase [Coenzyme metabolism]; Region: FolA; COG0262
216591009301	HMMPfam hit to PF01872, RibD C-terminal domain, score 1.2e-13
216591009302	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591009303	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5394
216591009304	PHB/PHA accumulation regulator DNA-binding domain; Region: PHB_acc_N; pfam07879
216591009305	PHB accumulation regulatory domain; Region: PHB_acc; pfam05233
216591009306	HMMPfam hit to PF05233, PHB accumulation regulatory domain, score 2e-16
216591009307	HMMPfam hit to PF05233, PHB accumulation regulatory domain, score 2.3e-19
216591009308	HMMPfam hit to PF07879, PHB/PHA accumulation regulator DNA-binding, score 3.5e-40
216591009309	acetyacetyl-CoA reductase; Provisional; Region: PRK12938
216591009310	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
216591009311	NAD(P) binding site [chemical binding]; other site
216591009312	homotetramer interface [polypeptide binding]; other site
216591009313	homodimer interface [polypeptide binding]; other site
216591009314	active site
216591009315	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00036
216591009316	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.5e-37
216591009317	PS00061 Short-chain dehydrogenases/reductases family signature.
216591009318	putative acyltransferase; Provisional; Region: PRK05790
216591009319	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591009320	dimer interface [polypeptide binding]; other site
216591009321	active site
216591009322	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 3.8e-85
216591009323	PS00099 Thiolases active site.
216591009324	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009325	PS00737 Thiolases signature 2.
216591009326	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 1.8e-177
216591009327	PS00098 Thiolases acyl-enzyme intermediate signature.
216591009328	poly(R)-hydroxyalkanoic acid synthase, class I; Region: PHA_synth_I; TIGR01838
216591009329	Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; Region: PhaC_N; pfam07167
216591009330	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 8.2e-20
216591009331	HMMPfam hit to PF07167, Poly-beta-hydroxybutyrate polymerase (P, score 8.9e-115
216591009332	Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496
216591009333	Multi-copper polyphenol oxidoreductase laccase; Region: Cu-oxidase_4; cl00650
216591009334	HMMPfam hit to PF02578, Uncharacterised ACR, YfiH family COG1496, score 4e-61
216591009335	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009336	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
216591009337	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
216591009338	RNA binding surface [nucleotide binding]; other site
216591009339	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
216591009340	active site
216591009341	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 8.1e-63
216591009342	PS01129 Rlu family of pseudouridine synthase signature.
216591009343	HMMPfam hit to PF01479, S4 domain, score 1.3e-06
216591009344	outer membrane assembly lipoprotein YfiO; Region: OM_YfiO; TIGR03302
216591009345	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009346	Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]; Region: DinG; COG1199
216591009347	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
216591009348	DEAD_2; Region: DEAD_2; pfam06733
216591009349	Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]; Region: DinG; COG1199
216591009350	Helicase C-terminal domain; Region: Helicase_C_2; pfam13307
216591009351	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009352	HMMPfam hit to PF04325, Protein of unknown function (DUF465), score 0.0001
216591009353	Transcriptional accessory protein [Transcription]; Region: Tex; COG2183
216591009354	Tex-like protein N-terminal domain; Region: Tex_N; pfam09371
216591009355	Likely ribonuclease with RNase H fold; Region: YqgFc; smart00732
216591009356	S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression; Region: S1_Tex; cd05685
216591009357	RNA binding site [nucleotide binding]; other site
216591009358	HMMPfam hit to PF00575, S1 RNA binding domain, score 6.5e-24
216591009359	K+ transporter [Inorganic ion transport and metabolism]; Region: Kup; COG3158
216591009360	potassium uptake protein; Region: kup; TIGR00794
216591009361	HMMPfam hit to PF02705, K+ potassium transporter, score 1.6e-168
216591009362	12 probable transmembrane helices predicted for BCAL1871 by TMHMM2.0 at aa 5-24, 39-61, 92-114, 129-151, 163-185, 205-227, 239-261, 283-305, 326-348, 358-380, 389-411 and 416-435
216591009363	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009364	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009365	Predicted phosphoribosyltransferases [General function prediction only]; Region: COG2236
216591009366	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591009367	active site
216591009368	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 2.1e-09
216591009369	PS00103 Purine/pyrimidine phosphoribosyl transferases signature.
216591009370	Adenylosuccinate synthetase; Region: Adenylsucc_synt; smart00788
216591009371	Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the...; Region: AdSS; cd03108
216591009372	GDP-binding site [chemical binding]; other site
216591009373	ACT binding site; other site
216591009374	IMP binding site; other site
216591009375	HMMPfam hit to PF00709, Adenylosuccinate synthetase, score 2.6e-296
216591009376	PS00513 Adenylosuccinate synthetase active site.
216591009377	PS01266 Adenylosuccinate synthetase GTP-binding site.
216591009378	ATP phosphoribosyltransferase regulatory subunit; Provisional; Region: PRK12421
216591009379	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for...; Region: HisRS-like_core; cd00773
216591009380	dimer interface [polypeptide binding]; other site
216591009381	motif 1; other site
216591009382	active site
216591009383	motif 2; other site
216591009384	motif 3; other site
216591009385	HMMPfam hit to PF00587, tRNA synthetase class II core domain (G,, score 8.6e-06
216591009386	Uncharacterized protein conserved in bacteria (DUF2065); Region: DUF2065; pfam09838
216591009387	2 probable transmembrane helices predicted for BCAL1875 by TMHMM2.0 at aa 7-29 and 44-61
216591009388	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
216591009389	Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflC; cd03405
216591009390	HMMPfam hit to PF01145, SPFH domain / Band, score 1.6e-21
216591009391	1 probable transmembrane helix predicted for BCAL1876 by TMHMM2.0 at aa 5-27
216591009392	Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflK; cd03404
216591009393	HflK protein; Region: hflK; TIGR01933
216591009394	HMMPfam hit to PF01145, SPFH domain / Band, score 3.9e-30
216591009395	1 probable transmembrane helix predicted for BCAL1877 by TMHMM2.0 at aa 89-111
216591009396	GTP-binding protein HflX; Region: GTP_HflX; TIGR03156
216591009397	GTP-binding GTPase N-terminal; Region: GTP-bdg_N; pfam13167
216591009398	HflX GTPase family; Region: HflX; cd01878
216591009399	G1 box; other site
216591009400	GTP/Mg2+ binding site [chemical binding]; other site
216591009401	Switch I region; other site
216591009402	G2 box; other site
216591009403	G3 box; other site
216591009404	Switch II region; other site
216591009405	G4 box; other site
216591009406	G5 box; other site
216591009407	HMMPfam hit to PF01926, GTPase of unknown function, score 1.9e-37
216591009408	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009409	bacterial Hfq-like; Region: Hfq; cd01716
216591009410	hexamer interface [polypeptide binding]; other site
216591009411	Sm1 motif; other site
216591009412	RNA binding site [nucleotide binding]; other site
216591009413	Sm2 motif; other site
216591009414	HMMPfam hit to PF01423, LSM domain, score 6.8e-14
216591009415	GTP-binding protein Der; Reviewed; Region: PRK00093
216591009416	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
216591009417	G1 box; other site
216591009418	GTP/Mg2+ binding site [chemical binding]; other site
216591009419	Switch I region; other site
216591009420	G2 box; other site
216591009421	Switch II region; other site
216591009422	G3 box; other site
216591009423	G4 box; other site
216591009424	G5 box; other site
216591009425	EngA2 GTPase contains the second domain of EngA; Region: EngA2; cd01895
216591009426	G1 box; other site
216591009427	GTP/Mg2+ binding site [chemical binding]; other site
216591009428	Switch I region; other site
216591009429	G2 box; other site
216591009430	G3 box; other site
216591009431	Switch II region; other site
216591009432	G4 box; other site
216591009433	G5 box; other site
216591009434	HMMPfam hit to PF01926, GTPase of unknown function, score 6.4e-43
216591009435	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009436	HMMPfam hit to PF01926, GTPase of unknown function, score 5.9e-48
216591009437	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009438	outer membrane assembly lipoprotein YfgL; Region: assembly_YfgL; TIGR03300
216591009439	PQQ-dependent dehydrogenases and related proteins; Region: PQQ_DH_like; cl11493
216591009440	Trp docking motif [polypeptide binding]; other site
216591009441	active site
216591009442	HMMPfam hit to PF01011, PQQ enzyme repeat, score 7.5e-06
216591009443	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009444	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2976
216591009445	Uncharacterized protein conserved in bacteria (DUF2133); Region: DUF2133; pfam09976
216591009446	1 probable transmembrane helix predicted for BCAL1882 by TMHMM2.0 at aa 15-37
216591009447	histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037
216591009448	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for...; Region: HisRS-like_core; cd00773
216591009449	dimer interface [polypeptide binding]; other site
216591009450	motif 1; other site
216591009451	active site
216591009452	motif 2; other site
216591009453	motif 3; other site
216591009454	HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859
216591009455	anticodon binding site; other site
216591009456	HMMPfam hit to PF03129, Anticodon binding domain, score 1.1e-08
216591009457	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 1.2e-46
216591009458	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed; Region: ispG; PRK00366
216591009459	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
216591009460	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
216591009461	HMMPfam hit to PF04551, GcpE protein, score 3.7e-169
216591009462	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591009463	non-specific DNA binding site [nucleotide binding]; other site
216591009464	salt bridge; other site
216591009465	sequence-specific DNA binding site [nucleotide binding]; other site
216591009466	Domain of unknown function (DUF4115); Region: DUF4115; pfam13464
216591009467	1 probable transmembrane helix predicted for BCAL1885 by TMHMM2.0 at aa 134-156
216591009468	ribosomal RNA large subunit methyltransferase N; Provisional; Region: PRK11194
216591009469	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591009470	FeS/SAM binding site; other site
216591009471	HMMPfam hit to PF04055, Radical SAM superfamily, score 1.9e-12
216591009472	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
216591009473	active site
216591009474	multimer interface [polypeptide binding]; other site
216591009475	HMMPfam hit to PF00334, Nucleoside diphosphate kinase, score 4.8e-74
216591009476	Integral membrane protein, interacts with FtsH [General function prediction only]; Region: COG0670
216591009477	YccA-like proteins; Region: YccA_like; cd10433
216591009478	HMMPfam hit to PF01027, Uncharacterised protein family UPF0005, score 4.2e-15
216591009479	7 probable transmembrane helices predicted for BCAL1888 by TMHMM2.0 at aa 33-55, 59-81, 88-110, 120-142, 149-171, 175-194 and 207-229
216591009480	23S rRNA m(5)U1939 methyltransferase; Reviewed; Region: rumA; PRK13168
216591009481	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591009482	S-adenosylmethionine binding site [chemical binding]; other site
216591009483	HMMPfam hit to PF05958, tRNA (Uracil-5-)-methyltransferase, score 9.5e-08
216591009484	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
216591009485	putative catalytic site [active]
216591009486	putative metal binding site [ion binding]; other site
216591009487	putative phosphate binding site [ion binding]; other site
216591009488	putative catalytic site [active]
216591009489	putative phosphate binding site [ion binding]; other site
216591009490	putative metal binding site [ion binding]; other site
216591009491	HMMPfam hit to PF03372, Endonuclease/Exonuclease/phosphatase fa, score 3e-19
216591009492	Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases; Region: DNA_polB_like1_exo; cd05782
216591009493	active site
216591009494	catalytic site [active]
216591009495	substrate binding site [chemical binding]; other site
216591009496	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; Region: DNA_pol_B_exo2; pfam10108
216591009497	RNA polymerase sigma factor RpoS; Region: rpoS_proteo; TIGR02394
216591009498	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
216591009499	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591009500	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591009501	DNA binding residues [nucleotide binding]
216591009502	HMMPfam hit to PF04545, Sigma-70, region, score 1.5e-20
216591009503	PS00716 Sigma-70 factors family signature 2.
216591009504	Predicted helix-turn-helix motif with score 1993.000, SD 5.97 at aa 320-341, sequence ATLEELADEMGLTRERVRQIQQ
216591009505	HMMPfam hit to PF04542, Sigma-70 region, score 1.2e-25
216591009506	PS00715 Sigma-70 factors family signature 1.
216591009507	HMMPfam hit to PF00140, Sigma-70 factor, region, score 9.8e-10
216591009508	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
216591009509	Peptidase family M23; Region: Peptidase_M23; pfam01551
216591009510	HMMPfam hit to PF01551, Peptidase family M23, score 9.5e-44
216591009511	HMMPfam hit to PF01476, LysM domain, score 1.1e-13
216591009512	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009513	Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]; Region: Pcm; COG2518
216591009514	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591009515	S-adenosylmethionine binding site [chemical binding]; other site
216591009516	HMMPfam hit to PF01135, Protein-L-isoaspartate(D-aspartate) O-methyl, score 1e-67
216591009517	5'(3')-nucleotidase/polyphosphatase; Provisional; Region: surE; PRK00346
216591009518	HMMPfam hit to PF01975, Survival protein SurE, score 1.3e-74
216591009519	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591009520	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591009521	HMMPfam hit to PF02515, CoA-transferase family III, score 7.2e-68
216591009522	recombination protein RecR; Reviewed; Region: recR; PRK00076
216591009523	RecR protein; Region: RecR; pfam02132
216591009524	TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR.  RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025
216591009525	putative active site [active]
216591009526	putative metal-binding site [ion binding]; other site
216591009527	tetramer interface [polypeptide binding]; other site
216591009528	HMMPfam hit to PF01751, Toprim domain, score 2.5e-10
216591009529	HMMPfam hit to PF02132, RecR protein, score 1.6e-10
216591009530	hypothetical protein; Validated; Region: PRK00153
216591009531	HMMPfam hit to PF02575, Uncharacterised BCR, YbaB family COG0718, score 2.8e-49
216591009532	DNA polymerase III, subunit gamma and tau; Region: dnaX_nterm; TIGR02397
216591009533	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591009534	Walker A motif; other site
216591009535	ATP binding site [chemical binding]; other site
216591009536	Walker B motif; other site
216591009537	arginine finger; other site
216591009538	DNA polymerase III subunits gamma and tau domain III; Region: DNA_pol3_gamma3; pfam12169
216591009539	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 6.7e-07
216591009540	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009541	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
216591009542	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591009543	catalytic residues [active]
216591009544	HMMPfam hit to PF00085, Thioredoxin, score 1.3e-51
216591009545	PS00194 Thioredoxin family active site.
216591009546	transcription termination factor Rho; Provisional; Region: rho; PRK09376
216591009547	Rho termination factor, N-terminal domain; Region: Rho_N; pfam07498
216591009548	Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA...; Region: Rho_CSD; cd04459
216591009549	RNA binding site [nucleotide binding]; other site
216591009550	Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the...; Region: rho_factor; cd01128
216591009551	multimer interface [polypeptide binding]; other site
216591009552	Walker A motif; other site
216591009553	ATP binding site [chemical binding]; other site
216591009554	Walker B motif; other site
216591009555	HMMPfam hit to PF07498, Rho termination factor, N-terminal domai, score 2e-19
216591009556	HMMPfam hit to PF07497, Rho termination factor, RNA-binding doma, score 2.9e-58
216591009557	HMMPfam hit to PF08206, Ribonuclease B OB domain, score 0.00065
216591009558	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleoti, score 8e-77
216591009559	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009560	Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600
216591009561	MerR HTH family regulatory protein; Region: MerR_1; pfam13411
216591009562	DNA binding residues [nucleotide binding]
216591009563	Predicted helix-turn-helix motif with score 1701.000, SD 4.98 at aa 1-22, sequence MTVSDAASRLGVTPRTLKYYEE
216591009564	HMMPfam hit to PF00376, MerR family regulatory protein, score 3.6e-13
216591009565	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591009566	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591009567	9 probable transmembrane helices predicted for BCAL1903 by TMHMM2.0 at aa 30-52, 89-111, 116-138, 153-171, 178-200, 220-242, 287-306, 321-343 and 433-455
216591009568	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009569	Phosphoenolpyruvate:glucose-phosphotransferase regulator; Region: MtfA; pfam06167
216591009570	HMMPfam hit to PF06167, Protein of unknown function (DUF980), score 3.3e-121
216591009571	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009572	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591009573	50S ribosomal protein L31 type B; Reviewed; Region: rpmE2; PRK01678
216591009574	HMMPfam hit to PF01197, Ribosomal protein L31, score 4.6e-17
216591009575	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807
216591009576	11 probable transmembrane helices predicted for BCAL1906 by TMHMM2.0 at aa 39-58, 124-146, 196-213, 223-252, 259-281, 320-337, 344-361, 371-388, 401-423, 443-462 and 475-497
216591009577	multidrug efflux protein; Reviewed; Region: PRK01766
216591009578	Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM; Region: MATE_NorM_like; cd13131
216591009579	cation binding site [ion binding]; other site
216591009580	12 probable transmembrane helices predicted for BCAL1907 by TMHMM2.0 at aa 9-31, 46-68, 89-106, 126-145, 157-179, 199-221, 242-264, 279-301, 314-336, 346-368, 380-402 and 417-439
216591009581	HMMPfam hit to PF01554, MatE, score 4.2e-37
216591009582	HMMPfam hit to PF01554, MatE, score 1.8e-32
216591009583	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009584	lipoyl synthase; Provisional; Region: PRK05481
216591009585	HMMPfam hit to PF04055, Radical SAM superfamily, score 1.3e-26
216591009586	acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional; Region: PRK14875
216591009587	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
216591009588	E3 interaction surface; other site
216591009589	lipoyl attachment site [posttranslational modification]; other site
216591009590	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.1e-35
216591009591	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 2.9e-10
216591009592	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
216591009593	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022
216591009594	Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036
216591009595	alpha subunit interface [polypeptide binding]; other site
216591009596	TPP binding site [chemical binding]; other site
216591009597	heterodimer interface [polypeptide binding]; other site
216591009598	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
216591009599	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 1.3e-55
216591009600	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 1e-78
216591009601	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009602	PS00430 TonB-dependent receptor proteins signature 1.
216591009603	pyruvate dehydrogenase E1 component, alpha subunit; Region: PDH_E1_alph_y; TIGR03182
216591009604	Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000
216591009605	tetramer interface [polypeptide binding]; other site
216591009606	TPP-binding site [chemical binding]; other site
216591009607	heterodimer interface [polypeptide binding]; other site
216591009608	phosphorylation loop region [posttranslational modification]
216591009609	HMMPfam hit to PF00676, Dehydrogenase E1 component, score 1.4e-119
216591009610	3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed; Region: PRK12826
216591009611	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591009612	NAD(P) binding site [chemical binding]; other site
216591009613	active site
216591009614	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0035
216591009615	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.6e-36
216591009616	PS00061 Short-chain dehydrogenases/reductases family signature.
216591009617	Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]; Region: COG3199
216591009618	HMMPfam hit to PF01513, ATP-NAD kinase, score 1.8e-43
216591009619	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591009620	Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]; Region: AcoR; COG3284
216591009621	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591009622	Walker A motif; other site
216591009623	ATP binding site [chemical binding]; other site
216591009624	Walker B motif; other site
216591009625	arginine finger; other site
216591009626	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591009627	HMMPfam hit to PF01590, GAF domain, score 8e-08
216591009628	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3.3e-118
216591009629	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591009630	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591009631	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591009632	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 1.3e-13
216591009633	Predicted helix-turn-helix motif with score 1687.000, SD 4.93 at aa 608-629, sequence WRPDAAARALGISRATLYRRIA
216591009634	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
216591009635	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 2.9e-30
216591009636	Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB; Region: HTH_YyaN; cd01109
216591009637	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
216591009638	DNA binding residues [nucleotide binding]
216591009639	putative dimer interface [polypeptide binding]; other site
216591009640	HMMPfam hit to PF00376, MerR family regulatory protein, score 1.2e-16
216591009641	PS00552 Bacterial regulatory proteins, merR family signature.
216591009642	Predicted helix-turn-helix motif with score 1978.000, SD 5.92 at aa 14-35, sequence LTIGQVAELTGVSTHTLRYYEQ
216591009643	DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]; Region: ComEA; COG1555
216591009644	1 probable transmembrane helix predicted for BCAL1917 by TMHMM2.0 at aa 19-38
216591009645	Bacterial protein of unknown function (DUF937); Region: DUF937; cl01528
216591009646	HMMPfam hit to PF06078, Bacterial protein of unknown function (DUF93, score 2.4e-28
216591009647	ATP-dependent chaperone ClpB; Region: chaperone_ClpB; TIGR03346
216591009648	Clp amino terminal domain; Region: Clp_N; pfam02861
216591009649	Clp amino terminal domain; Region: Clp_N; pfam02861
216591009650	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591009651	Walker A motif; other site
216591009652	ATP binding site [chemical binding]; other site
216591009653	Walker B motif; other site
216591009654	arginine finger; other site
216591009655	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591009656	Walker A motif; other site
216591009657	ATP binding site [chemical binding]; other site
216591009658	Walker B motif; other site
216591009659	arginine finger; other site
216591009660	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
216591009661	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 3.6e-109
216591009662	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 1.3e-05
216591009663	PS00871 Chaperonins clpA/B signature 2.
216591009664	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009665	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 8.4e-14
216591009666	PS00870 Chaperonins clpA/B signature 1.
216591009667	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009668	HMMPfam hit to PF02861, Clp amino terminal domain, score 3.8e-12
216591009669	HMMPfam hit to PF02861, Clp amino terminal domain, score 2.2e-13
216591009670	Transcriptional regulator; Region: Rrf2; cl17282
216591009671	Rrf2 family protein; Region: rrf2_super; TIGR00738
216591009672	HMMPfam hit to PF02082, Transcriptional regulator, score 6.3e-42
216591009673	Predicted helix-turn-helix motif with score 1368.000, SD 3.85 at aa 25-46, sequence ATIQEISDAYGISKNHLMKVVQ
216591009674	superfamily containing globins and truncated hemoglobins; Region: globin_like; cl00280
216591009675	heme-binding site [chemical binding]; other site
216591009676	MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoaE; cd00756
216591009677	MoaE homodimer interface [polypeptide binding]; other site
216591009678	MoaD interaction [polypeptide binding]; other site
216591009679	active site residues [active]
216591009680	HMMPfam hit to PF02391, MoaE protein, score 1.6e-45
216591009681	Ubiquitin domain of MoaD-like proteins; Region: MoaD; cd00754
216591009682	MoaE interaction surface [polypeptide binding]; other site
216591009683	MoeB interaction surface [polypeptide binding]; other site
216591009684	thiocarboxylated glycine; other site
216591009685	HMMPfam hit to PF02597, ThiS family, score 1.1e-21
216591009686	Molybdopterin biosynthesis enzyme [Coenzyme metabolism]; Region: MoeA; COG0303
216591009687	MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887
216591009688	dimer interface [polypeptide binding]; other site
216591009689	putative functional site; other site
216591009690	putative MPT binding site; other site
216591009691	HMMPfam hit to PF03454, MoeA C-terminal region (domain IV), score 0.00052
216591009692	HMMPfam hit to PF00994, Probable molybdopterin binding domain, score 1.1e-53
216591009693	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009694	HMMPfam hit to PF03453, MoeA N-terminal region (domain I and II, score 1.2e-64
216591009695	Threonine synthase [Amino acid transport and metabolism]; Region: ThrC; COG0498
216591009696	Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants; Region: Thr-synth_2; cd01560
216591009697	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591009698	catalytic residue [active]
216591009699	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 1.3e-28
216591009700	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.
216591009701	homoserine dehydrogenase; Provisional; Region: PRK06349
216591009702	Homoserine dehydrogenase, NAD binding domain; Region: NAD_binding_3; pfam03447
216591009703	Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742
216591009704	ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains; Region: ACT_HSDH-Hom; cd04881
216591009705	HMMPfam hit to PF01842, ACT domain, score 2.7e-13
216591009706	HMMPfam hit to PF00742, Homoserine dehydrogenase, score 2.3e-99
216591009707	PS01042 Homoserine dehydrogenase signature.
216591009708	HMMPfam hit to PF03447, Homoserine dehydrogenase, NAD binding d, score 2.3e-32
216591009709	aminotransferase AlaT; Validated; Region: PRK09265
216591009710	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591009711	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591009712	homodimer interface [polypeptide binding]; other site
216591009713	catalytic residue [active]
216591009714	HMMPfam hit to PF00155, Aminotransferase class I and II, score 3.6e-42
216591009715	Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome; Region: Xcc1710_like; cd05560
216591009716	HMMPfam hit to PF04430, Protein of unknown function (DUF498/DUF598), score 1.1e-36
216591009717	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807
216591009718	Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT_2; cl17364
216591009719	HMMPfam hit to PF02366, Dolichyl-phosphate-mannose-protein mannosylt, score 9.4e-17
216591009720	11 probable transmembrane helices predicted for BCAL1929 by TMHMM2.0 at aa 13-32, 89-108, 113-135, 180-202, 215-237, 266-285, 298-320, 325-347, 356-378, 388-410 and 415-437
216591009721	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional; Region: PRK02971
216591009722	4 probable transmembrane helices predicted for BCAL1930 by TMHMM2.0 at aa 5-27, 47-69, 76-98 and 102-121
216591009723	HMMPfam hit to PF00893, Small Multidrug Resistance protein, score 0.0011
216591009724	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009725	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
216591009726	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
216591009727	inhibitor-cofactor binding pocket; inhibition site
216591009728	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591009729	catalytic residue [active]
216591009730	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 3.6e-135
216591009731	HMMPfam hit to PF01212, Beta-eliminating lyase, score 1.7e-05
216591009732	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714
216591009733	Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187
216591009734	Ligand binding site; other site
216591009735	Putative Catalytic site; other site
216591009736	DXD motif; other site
216591009737	HMMPfam hit to PF00535, Glycosyl transferase family, score 1.3e-27
216591009738	2 probable transmembrane helices predicted for BCAL1932 by TMHMM2.0 at aa 247-269 and 281-303
216591009739	putative formyltransferase; Provisional; Region: PRK06988
216591009740	Formyltransferase, catalytic core domain; Region: FMT_core; cl00395
216591009741	active site
216591009742	substrate binding site [chemical binding]; other site
216591009743	cosubstrate binding site; other site
216591009744	catalytic site [active]
216591009745	Carboxy-terminal domain of Formyltransferase and similar domains; Region: FMT_C_like; cl14785
216591009746	HMMPfam hit to PF00551, Formyl transferase, score 1.5e-19
216591009747	HMMPfam hit to PF02911, Formyl transferase, C-terminal domain, score 8.4e-14
216591009748	NAD-dependent epimerase/dehydratase family protein; Provisional; Region: PRK11908
216591009749	Arna decarboxylase_like, extended (e) SDRs; Region: Arna_like_SDR_e; cd05257
216591009750	NAD binding site [chemical binding]; other site
216591009751	substrate binding site [chemical binding]; other site
216591009752	active site
216591009753	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 1.3e-56
216591009754	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/isomera, score 0.002
216591009755	4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional; Region: PRK15394
216591009756	Catalytic domain of Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD and other bacterial homologs; Region: CE4_ArnD; cd10939
216591009757	putative active site [active]
216591009758	putative catalytic site [active]
216591009759	putative Zn binding site [ion binding]; other site
216591009760	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 0.00018
216591009761	Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing...; Region: PRX_BCP; cd03017
216591009762	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591009763	catalytic triad [active]
216591009764	HMMPfam hit to PF08534, Redoxin, score 1.1e-11
216591009765	HMMPfam hit to PF00578, AhpC/TSA family, score 3.2e-14
216591009766	NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]; Region: COG1875
216591009767	PIN domain of bacterial Smg6-like homologs with PhoH-like ATPase domains; Region: PIN_PhoHL-ATPase; cd09883
216591009768	putative active site [active]
216591009769	PhoH-like protein; Region: PhoH; pfam02562
216591009770	HMMPfam hit to PF02562, PhoH-like protein, score 2.6e-29
216591009771	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009772	outer membrane lipoprotein; Provisional; Region: spr; PRK10838
216591009773	NlpC/P60 family; Region: NLPC_P60; pfam00877
216591009774	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009775	HMMPfam hit to PF00877, NlpC/P60 family, score 9.3e-45
216591009776	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
216591009777	9 probable transmembrane helices predicted for BCAL1939 by TMHMM2.0 at aa 5-27, 48-65, 80-99, 101-123, 143-165, 200-217, 222-244, 257-279 and 310-332
216591009778	HMMPfam hit to PF01384, Phosphate transporter family, score 9e-96
216591009779	Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]; Region: COG1392
216591009780	HMMPfam hit to PF01865, Protein of unknown function DUF47, score 2.2e-16
216591009781	replicative DNA helicase; Provisional; Region: PRK07004
216591009782	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
216591009783	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
216591009784	Walker A motif; other site
216591009785	ATP binding site [chemical binding]; other site
216591009786	Walker B motif; other site
216591009787	DNA binding loops [nucleotide binding]
216591009788	HMMPfam hit to PF03796, DnaB-like helicase C terminal domain, score 2.5e-127
216591009789	Predicted helix-turn-helix motif with score 1297.000, SD 3.60 at aa 354-375, sequence RSLKSLAKELDVPVIALSQLNR
216591009790	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009791	HMMPfam hit to PF00772, DnaB-like helicase N terminal domain, score 1.2e-45
216591009792	50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137
216591009793	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
216591009794	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
216591009795	HMMPfam hit to PF03948, Ribosomal protein L9, C-terminal domai, score 3.5e-23
216591009796	HMMPfam hit to PF01281, Ribosomal protein L9, N-terminal domai, score 3.2e-25
216591009797	PS00651 Ribosomal protein L9 signature.
216591009798	30S ribosomal protein S18; Reviewed; Region: rpsR; PRK00391
216591009799	HMMPfam hit to PF01084, Ribosomal protein S18, score 6.2e-28
216591009800	Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold; Region: RPA_2b-aaRSs_OBF_like; cl09930
216591009801	30S ribosomal protein S6; Reviewed; Region: rpsF; PRK00453
216591009802	HMMPfam hit to PF01250, Ribosomal protein S6, score 1.4e-42
216591009803	Putative zinc-finger; Region: zf-HC2; pfam13490
216591009804	Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]; Region: COG5662
216591009805	RNA polymerase sigma factor; Provisional; Region: PRK12533
216591009806	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591009807	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591009808	DNA binding residues [nucleotide binding]
216591009809	HMMPfam hit to PF04545, Sigma-70, region, score 1.2e-18
216591009810	HMMPfam hit to PF08281, Sigma-70, region, score 1.4e-18
216591009811	Predicted helix-turn-helix motif with score 1167.000, SD 3.16 at aa 154-175, sequence LSYREIAAIVDVPVGTVMSRLA
216591009812	HMMPfam hit to PF04542, Sigma-70 region, score 6.9e-17
216591009813	PS01063 Sigma-70 factors ECF subfamily signature.
216591009814	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591009815	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591009816	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591009817	putative effector binding pocket; other site
216591009818	dimerization interface [polypeptide binding]; other site
216591009819	HMMPfam hit to PF03466, LysR substrate binding domain, score 1e-44
216591009820	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4e-15
216591009821	PS00044 Bacterial regulatory proteins, lysR family signature.
216591009822	Predicted helix-turn-helix motif with score 1009.000, SD 2.62 at aa 17-38, sequence GSLAAAALEEGVSPVVLGRRID
216591009823	glyoxylate carboligase; Provisional; Region: PRK11269
216591009824	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591009825	PYR/PP interface [polypeptide binding]; other site
216591009826	dimer interface [polypeptide binding]; other site
216591009827	TPP binding site [chemical binding]; other site
216591009828	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591009829	Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629
216591009830	TPP-binding site [chemical binding]; other site
216591009831	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 2.9e-54
216591009832	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 2.1e-34
216591009833	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 3.9e-45
216591009834	PS01067 Protein secE/sec61-gamma signature.
216591009835	hydroxypyruvate isomerase; Region: OH-pyruv-isom; TIGR03234
216591009836	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 1.1e-51
216591009837	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009838	tartronate semialdehyde reductase; Provisional; Region: PRK15059
216591009839	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591009840	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 7.8e-70
216591009841	HMMPfam hit to PF03807, NADP oxidoreductase coenzyme F420-depen, score 0.002
216591009842	LysM domain/BON superfamily protein; Provisional; Region: PRK11198
216591009843	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
216591009844	HMMPfam hit to PF01476, LysM domain, score 5.4e-11
216591009845	Type II (periplasmic) bacterial L-asparaginase; Region: L-asparaginase_II; cd08964
216591009846	active site
216591009847	homodimer interface [polypeptide binding]; other site
216591009848	homotetramer interface [polypeptide binding]; other site
216591009849	HMMPfam hit to PF00710, Asparaginase, score 1.4e-133
216591009850	PS00917 Asparaginase / glutaminase active site signature 2.
216591009851	PS00144 Asparaginase / glutaminase active site signature 1.
216591009852	psiF repeat; Region: PsiF_repeat; pfam07769
216591009853	psiF repeat; Region: PsiF_repeat; pfam07769
216591009854	1 probable transmembrane helix predicted for BCAL1954 by TMHMM2.0 at aa 5-24
216591009855	HMMPfam hit to PF07769, psiF repeat, score 1.4e-09
216591009856	HMMPfam hit to PF07769, psiF repeat, score 2.6e-10
216591009857	Domain of unknown function DUF221; Region: DUF221; pfam02714
216591009858	2 probable transmembrane helices predicted for BCAL1955 by TMHMM2.0 at aa 12-31 and 109-131
216591009859	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009860	The SYLF domain (also called DUF500), a novel lipid-binding module; Region: SYLF; cd11524
216591009861	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009862	This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant...; Region: GT1_AviGT4_like; cd03802
216591009863	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591009864	putative ADP-binding pocket [chemical binding]; other site
216591009865	HMMPfam hit to PF00534, Glycosyl transferases group, score 9.3e-23
216591009866	Predicted ATPase [General function prediction only]; Region: COG4637
216591009867	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591009868	Walker A/P-loop; other site
216591009869	ATP binding site [chemical binding]; other site
216591009870	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009871	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
216591009872	Mechanosensitive ion channel; Region: MS_channel; pfam00924
216591009873	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 7e-14
216591009874	4 probable transmembrane helices predicted for BCAL1959 by TMHMM2.0 at aa 15-34, 55-77, 92-114 and 140-162
216591009875	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
216591009876	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
216591009877	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
216591009878	HMMPfam hit to PF00023, Ankyrin repeat, score 7.2e-10
216591009879	HMMPfam hit to PF00023, Ankyrin repeat, score 1.2
216591009880	HMMPfam hit to PF00023, Ankyrin repeat, score 5.3e-06
216591009881	1 probable transmembrane helix predicted for BCAL1961 by TMHMM2.0 at aa 12-34
216591009882	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
216591009883	active site
216591009884	HMMPfam hit to PF01026, TatD related DNase, score 2.6e-111
216591009885	PS01091 Uncharacterized protein family UPF0006 signature 3.
216591009886	PS01137 Uncharacterized protein family UPF0006 signature 1.
216591009887	DNA polymerase III subunit delta'; Validated; Region: PRK06964
216591009888	DNA polymerase III subunit delta'; Validated; Region: PRK08485
216591009889	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009890	thymidylate kinase; Validated; Region: tmk; PRK00698
216591009891	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
216591009892	TMP-binding site; other site
216591009893	ATP-binding site [chemical binding]; other site
216591009894	HMMPfam hit to PF02223, Thymidylate kinase, score 4.3e-55
216591009895	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009896	YceG-like family; Region: YceG; pfam02618
216591009897	proteins similar to Escherichia coli yceG; Region: yceG_like; cd08010
216591009898	dimerization interface [polypeptide binding]; other site
216591009899	HMMPfam hit to PF02618, Aminodeoxychorismate lyase, score 8.8e-134
216591009900	1 probable transmembrane helix predicted for BCAL1965 by TMHMM2.0 at aa 7-29
216591009901	Predicted aminomethyltransferase related to GcvT [General function prediction only]; Region: COG0354
216591009902	folate-binding protein YgfZ; Region: ygfZ_signature; TIGR03317
216591009903	HMMPfam hit to PF01571, Glycine cleavage T-protein (aminomethyl tran, score 2.1e-08
216591009904	NRDE protein; Region: NRDE; cl01315
216591009905	HMMPfam hit to PF05742, Protein of unknown function (DUF833), score 1.4e-72
216591009906	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591009907	Coenzyme A binding pocket [chemical binding]; other site
216591009908	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.4e-10
216591009909	Esterases and lipases (includes fungal lipases, cholinesterases, etc.)  These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cd00312
216591009910	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591009911	substrate binding pocket [chemical binding]; other site
216591009912	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 1.7e-98
216591009913	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
216591009914	CoenzymeA binding site [chemical binding]; other site
216591009915	subunit interaction site [polypeptide binding]; other site
216591009916	PHB binding site; other site
216591009917	HMMPfam hit to PF03061, Thioesterase superfamily, score 2.4e-14
216591009918	Stress responsive A/B Barrel Domain; Region: Dabb; smart00886
216591009919	HMMPfam hit to PF07876, Stress responsive A/B Barrel Domain, score 8.1e-25
216591009920	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
216591009921	homotrimer interaction site [polypeptide binding]; other site
216591009922	putative active site [active]
216591009923	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 1.4e-23
216591009924	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591009925	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591009926	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591009927	metal binding site [ion binding]; metal-binding site
216591009928	active site
216591009929	I-site; other site
216591009930	HMMPfam hit to PF00990, GGDEF domain, score 8e-55
216591009931	8 probable transmembrane helices predicted for BCAL1975 by TMHMM2.0 at aa 21-43, 58-78, 85-107, 117-139, 152-174, 184-203, 210-232 and 236-258
216591009932	acetyl-CoA acetyltransferase; Provisional; Region: PRK07108
216591009933	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591009934	dimer interface [polypeptide binding]; other site
216591009935	active site
216591009936	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 2.3e-62
216591009937	PS00737 Thiolases signature 2.
216591009938	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 6.3e-88
216591009939	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591009940	PS00098 Thiolases acyl-enzyme intermediate signature.
216591009941	Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is...; Region: nicotinamidase; cd01011
216591009942	Isochorismatase family; Region: Isochorismatase; pfam00857
216591009943	catalytic triad [active]
216591009944	metal binding site [ion binding]; metal-binding site
216591009945	conserved cis-peptide bond; other site
216591009946	HMMPfam hit to PF00857, Isochorismatase family, score 3.7e-15
216591009947	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591009948	multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154
216591009949	substrate binding site [chemical binding]; other site
216591009950	oxyanion hole (OAH) forming residues; other site
216591009951	trimer interface [polypeptide binding]; other site
216591009952	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
216591009953	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591009954	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591009955	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 4.3e-37
216591009956	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, score 4.1e-93
216591009957	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 7.3e-50
216591009958	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07008
216591009959	Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles; Region: ttLC_FACS_AlkK_like; cd12119
216591009960	dimer interface [polypeptide binding]; other site
216591009961	acyl-activating enzyme (AAE) consensus motif; other site
216591009962	putative active site [active]
216591009963	AMP binding site [chemical binding]; other site
216591009964	putative CoA binding site [chemical binding]; other site
216591009965	HMMPfam hit to PF00501, AMP-binding enzyme, score 9.2e-99
216591009966	PS00017 ATP/GTP-binding site motif A (P-loop).
216591009967	PS00455 Putative AMP-binding domain signature.
216591009968	PS00139 Eukaryotic thiol (cysteine) proteases cysteine active site.
216591009969	Uncharacterized conserved protein [Function unknown]; Region: COG0397
216591009970	hypothetical protein; Validated; Region: PRK00029
216591009971	HMMPfam hit to PF02696, Uncharacterized ACR, YdiU/UPF0061 family, score 7.6e-108
216591009972	methionine sulfoxide reductase B; Provisional; Region: PRK00222
216591009973	SelR domain; Region: SelR; pfam01641
216591009974	HMMPfam hit to PF01641, SelR domain, score 2.7e-78
216591009975	intracellular septation protein A; Reviewed; Region: PRK00259
216591009976	HMMPfam hit to PF04279, Intracellular septation protein A, score 1.6e-78
216591009977	5 probable transmembrane helices predicted for BCAL1983 by TMHMM2.0 at aa 12-34, 49-68, 80-97, 119-141 and 146-168
216591009978	BolA-like protein; Region: BolA; pfam01722
216591009979	HMMPfam hit to PF01722, BolA-like protein, score 2.8e-26
216591009980	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
216591009981	HMMPfam hit to PF00639, PPIC-type PPIASE domain, score 4e-37
216591009982	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591009983	Coenzyme A binding pocket [chemical binding]; other site
216591009984	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.4e-14
216591009985	phosphoribosylformylglycinamidine synthase; Provisional; Region: PRK05297
216591009986	PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP; Region: PurL_repeat1; cd02203
216591009987	dimerization interface [polypeptide binding]; other site
216591009988	ATP binding site [chemical binding]; other site
216591009989	PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP; Region: PurL_repeat2; cd02204
216591009990	dimerization interface [polypeptide binding]; other site
216591009991	ATP binding site [chemical binding]; other site
216591009992	Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase; Region: GATase1_FGAR_AT; cd01740
216591009993	putative active site [active]
216591009994	catalytic triad [active]
216591009995	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 4.1e-22
216591009996	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 2.8e-34
216591009997	HMMPfam hit to PF00586, AIR synthase related protein, N-terminal dom, score 3.2e-21
216591009998	D-amino acid dehydrogenase small subunit; Validated; Region: PRK00711
216591009999	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.5e-54
216591010000	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010001	YjeF-related protein N-terminus; Region: YjeF_N; pfam03853
216591010002	B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily; Region: YXKO-related; cd01171
216591010003	putative substrate binding site [chemical binding]; other site
216591010004	putative ATP binding site [chemical binding]; other site
216591010005	HMMPfam hit to PF03853, YjeF-related protein N-terminus, score 1.8e-27
216591010006	PS01067 Protein secE/sec61-gamma signature.
216591010007	HMMPfam hit to PF01256, Carbohydrate kinase, score 1.7e-60
216591010008	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010009	glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179
216591010010	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
216591010011	active site
216591010012	dimer interface [polypeptide binding]; other site
216591010013	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
216591010014	dimer interface [polypeptide binding]; other site
216591010015	active site
216591010016	HMMPfam hit to PF00342, Phosphoglucose isomerase, score 1.8e-237
216591010017	PS00765 Phosphoglucose isomerase signature 1.
216591010018	Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG4181
216591010019	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
216591010020	Walker A/P-loop; other site
216591010021	ATP binding site [chemical binding]; other site
216591010022	Q-loop/lid; other site
216591010023	ABC transporter signature motif; other site
216591010024	Walker B; other site
216591010025	D-loop; other site
216591010026	H-loop/switch region; other site
216591010027	HMMPfam hit to PF00005, ABC transporter, score 9.9e-61
216591010028	PS00211 ABC transporters family signature.
216591010029	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010030	Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity; Region: Lysophospholipase_L1_like; cd01822
216591010031	active site
216591010032	catalytic triad [active]
216591010033	oxyanion hole [active]
216591010034	switch loop; other site
216591010035	HMMPfam hit to PF00657, GDSL-like Lipase/Acylhydrolase, score 1.9e-26
216591010036	SurA N-terminal domain; Region: SurA_N_3; cl07813
216591010037	periplasmic folding chaperone; Provisional; Region: PRK10788
216591010038	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
216591010039	HMMPfam hit to PF00639, PPIC-type PPIASE domain, score 1.3e-26
216591010040	1 probable transmembrane helix predicted for BCAL1993 by TMHMM2.0 at aa 13-32
216591010041	ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466
216591010042	Found in ATP-dependent protease La (LON); Region: LON; smart00464
216591010043	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591010044	Walker A motif; other site
216591010045	ATP binding site [chemical binding]; other site
216591010046	Walker B motif; other site
216591010047	arginine finger; other site
216591010048	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
216591010049	HMMPfam hit to PF05362, Lon protease (S16) C-terminal proteolytic do, score 2.8e-150
216591010050	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.1e-45
216591010051	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 1.6e-06
216591010052	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010053	HMMPfam hit to PF02190, ATP-dependent protease La (LON) domain, score 1.8e-38
216591010054	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
216591010055	ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689
216591010056	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591010057	Walker A motif; other site
216591010058	ATP binding site [chemical binding]; other site
216591010059	Walker B motif; other site
216591010060	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
216591010061	HMMPfam hit to PF07724, ATPase family associated with various cell, score 8.3e-82
216591010062	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010063	HMMPfam hit to PF06689, ClpX C4-type zinc finger, score 3.3e-26
216591010064	Clp protease; Region: CLP_protease; pfam00574
216591010065	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
216591010066	oligomer interface [polypeptide binding]; other site
216591010067	active site residues [active]
216591010068	HMMPfam hit to PF00574, Clp protease, score 7.6e-139
216591010069	PS00382 Endopeptidase Clp histidine active site.
216591010070	PS00381 Endopeptidase Clp serine active site.
216591010071	trigger factor; Provisional; Region: tig; PRK01490
216591010072	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
216591010073	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
216591010074	HMMPfam hit to PF05698, Bacterial trigger factor protein (TF) C-ter, score 1.8e-52
216591010075	HMMPfam hit to PF00254, FKBP-type peptidyl-prolyl cis-trans isomera, score 4.2e-24
216591010076	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010077	HMMPfam hit to PF05697, Bacterial trigger factor protein (TF), score 2.7e-48
216591010078	Glycerate kinase [Carbohydrate transport and metabolism]; Region: COG1929
216591010079	HMMPfam hit to PF02595, Glycerate kinase family, score 1.2e-79
216591010080	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591010081	MarR family; Region: MarR_2; pfam12802
216591010082	MarR family; Region: MarR_2; cl17246
216591010083	HMMPfam hit to PF01047, MarR family, score 9.9e-15
216591010084	Predicted helix-turn-helix motif with score 1109.000, SD 2.96 at aa 54-75, sequence FSIMDLARHTNLDKSQASRAAE
216591010085	2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522
216591010086	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
216591010087	Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546
216591010088	HMMPfam hit to PF08546, Ketopantoate reductase PanE/ApbA C ter, score 4.7e-41
216591010089	HMMPfam hit to PF02558, Ketopantoate reductase PanE/ApbA, score 2.2e-23
216591010090	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 0.00064
216591010091	1 probable transmembrane helix predicted for BCAL2000 by TMHMM2.0 at aa 7-29
216591010092	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591010093	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591010094	dimerization interface [polypeptide binding]; other site
216591010095	DNA binding residues [nucleotide binding]
216591010096	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 6.6e-10
216591010097	HMMPfam hit to PF04545, Sigma-70, region, score 7.3e-06
216591010098	HMMPfam hit to PF04967, HTH DNA binding domain, score 0.0013
216591010099	HMMPfam hit to PF08281, Sigma-70, region, score 5.7e-07
216591010100	Predicted helix-turn-helix motif with score 1898.000, SD 5.65 at aa 323-344, sequence RSHKEVAQQMAISPTTVRHYLR
216591010101	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591010102	trimer interface [polypeptide binding]; other site
216591010103	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591010104	eyelet of channel; other site
216591010105	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010106	HMMPfam hit to PF00267, Gram-negative porin, score 0.00014
216591010107	PS00213 Lipocalin signature.
216591010108	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 9.9e-20
216591010109	12 probable transmembrane helices predicted for BCAL2003 by TMHMM2.0 at aa 23-45, 60-82, 89-111, 116-138, 145-167, 177-199, 219-241, 256-278, 285-302, 312-334, 341-363 and 368-387
216591010110	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010111	Histone deacetylases and histone-like deacetylases, classII; Region: HDAC_classII_1; cd09996
216591010112	Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123
216591010113	active site
216591010114	Zn binding site [ion binding]; other site
216591010115	HMMPfam hit to PF00850, Histone deacetylase domain, score 7.7e-79
216591010116	2 probable transmembrane helices predicted for BCAL2005 by TMHMM2.0 at aa 21-43 and 53-75
216591010117	Trans-Isoprenyl Diphosphate Synthases, head-to-head; Region: Trans_IPPS_HH; cd00683
216591010118	active site lid residues [active]
216591010119	substrate binding pocket [chemical binding]; other site
216591010120	catalytic residues [active]
216591010121	substrate-Mg2+ binding site; other site
216591010122	aspartate-rich region 1; other site
216591010123	aspartate-rich region 2; other site
216591010124	HMMPfam hit to PF00494, Squalene/phytoene synthase, score 2e-08
216591010125	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4102
216591010126	HMMPfam hit to PF07394, Protein of unknown function (DUF1501), score 8.7e-23
216591010127	Protein of unknown function (DUF1800); Region: DUF1800; pfam08811
216591010128	PS00116 DNA polymerase family B signature.
216591010129	osmolarity response regulator; Provisional; Region: ompR; PRK09468
216591010130	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591010131	active site
216591010132	phosphorylation site [posttranslational modification]
216591010133	intermolecular recognition site; other site
216591010134	dimerization interface [polypeptide binding]; other site
216591010135	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591010136	DNA binding site [nucleotide binding]
216591010137	HMMPfam hit to PF00072, Response regulator receiver domain, score 9.2e-43
216591010138	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 7.2e-23
216591010139	osmolarity sensor protein; Provisional; Region: envZ; PRK09467
216591010140	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591010141	dimer interface [polypeptide binding]; other site
216591010142	phosphorylation site [posttranslational modification]
216591010143	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591010144	ATP binding site [chemical binding]; other site
216591010145	Mg2+ binding site [ion binding]; other site
216591010146	G-X-G motif; other site
216591010147	2 probable transmembrane helices predicted for BCAL2012 by TMHMM2.0 at aa 15-37 and 161-183
216591010148	HMMPfam hit to PF00672, HAMP domain, score 2e-08
216591010149	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.9e-09
216591010150	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1e-30
216591010151	Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450
216591010152	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
216591010153	dimer interface [polypeptide binding]; other site
216591010154	decamer (pentamer of dimers) interface [polypeptide binding]; other site
216591010155	catalytic triad [active]
216591010156	peroxidatic and resolving cysteines [active]
216591010157	HMMPfam hit to PF08534, Redoxin, score 0.00056
216591010158	HMMPfam hit to PF00578, AhpC/TSA family, score 1.1e-34
216591010159	alkylhydroperoxidase, AhpD family; Region: ahpD; TIGR00777
216591010160	Carboxymuconolactone decarboxylase family; Region: CMD; pfam02627
216591010161	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 7.3e-12
216591010162	MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis; Region: MECDP_synthase; cd00554
216591010163	homotrimer interaction site [polypeptide binding]; other site
216591010164	zinc binding site [ion binding]; other site
216591010165	CDP-binding sites; other site
216591010166	HMMPfam hit to PF02542, YgbB family, score 3.5e-85
216591010167	CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516
216591010168	substrate binding site; other site
216591010169	dimer interface; other site
216591010170	HMMPfam hit to PF01128, Uncharacterized protein family UPF0007, score 2.1e-64
216591010171	PS01295 Uncharacterized protein family UPF0007 signature.
216591010172	Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197
216591010173	CarD-like/TRCF domain; Region: CarD_TRCF; smart01058
216591010174	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591010175	ATP binding site [chemical binding]; other site
216591010176	putative Mg++ binding site [ion binding]; other site
216591010177	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591010178	nucleotide binding region [chemical binding]; other site
216591010179	ATP-binding site [chemical binding]; other site
216591010180	This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli; Region: TRCF; smart00982
216591010181	HMMPfam hit to PF02559, CarD-like/TRCF domain, score 1.9e-47
216591010182	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 1e-05
216591010183	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 1.2e-36
216591010184	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010185	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 6.5e-19
216591010186	HMMPfam hit to PF03461, TRCF domain, score 2.9e-35
216591010187	acetylornithine deacetylase; Provisional; Region: PRK07522
216591010188	M20 Peptidase acetylornithine deacetylase; Region: M20_ArgE; cd03894
216591010189	metal binding site [ion binding]; metal-binding site
216591010190	putative dimer interface [polypeptide binding]; other site
216591010191	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 1.7e-49
216591010192	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 2.1e-30
216591010193	Threonine dehydratase [Amino acid transport and metabolism]; Region: IlvA; COG1171
216591010194	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
216591010195	tetramer interface [polypeptide binding]; other site
216591010196	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591010197	catalytic residue [active]
216591010198	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 7.6e-58
216591010199	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.
216591010200	Protein of unknown function (DUF3574); Region: DUF3574; pfam12098
216591010201	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010202	Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]; Region: MrcA; COG5009
216591010203	Transglycosylase; Region: Transgly; pfam00912
216591010204	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
216591010205	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 2.1e-25
216591010206	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591010207	HMMPfam hit to PF00912, Transglycosylase, score 3e-89
216591010208	1 probable transmembrane helix predicted for BCAL2021 by TMHMM2.0 at aa 61-83
216591010209	Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]; Region: PspA; COG1842
216591010210	HMMPfam hit to PF04012, PspA/IM30 family, score 7e-26
216591010211	Tetratricopeptide repeat; Region: TPR_16; pfam13432
216591010212	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
216591010213	TPR motif; other site
216591010214	1 probable transmembrane helix predicted for BCAL2023 by TMHMM2.0 at aa 140-162
216591010215	large-conductance mechanosensitive channel; Provisional; Region: mscL; PRK13952
216591010216	large-conductance mechanosensitive channel; Reviewed; Region: mscL; PRK00567
216591010217	HMMPfam hit to PF01741, Large-conductance mechanosensitive channel,, score 1.3e-54
216591010218	1 probable transmembrane helix predicted for BCAL2024 by TMHMM2.0 at aa 85-107
216591010219	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084
216591010220	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591010221	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 7.2e-62
216591010222	Dodecin; Region: Dodecin; pfam07311
216591010223	HMMPfam hit to PF07311, Protein of unknown function (DUF1458), score 1.6e-39
216591010224	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010225	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591010226	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591010227	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_like_4; cd08463
216591010228	putative substrate binding pocket [chemical binding]; other site
216591010229	putative dimerization interface [polypeptide binding]; other site
216591010230	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.5e-16
216591010231	Predicted helix-turn-helix motif with score 1334.000, SD 3.73 at aa 23-44, sequence RSVTRAAVKLNQSQPAISAALR
216591010232	PS00044 Bacterial regulatory proteins, lysR family signature.
216591010233	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.6e-19
216591010234	hydroxydechloroatrazine ethylaminohydrolase; Reviewed; Region: PRK08203
216591010235	TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are...; Region: ATZ_TRZ_like; cd01298
216591010236	active site
216591010237	putative substrate binding pocket [chemical binding]; other site
216591010238	HMMPfam hit to PF01979, Amidohydrolase family, score 6e-57
216591010239	HMMPfam hit to PF07969, Amidohydrolase family, score 0.00014
216591010240	HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU); Region: TLP_HIUase; cd05822
216591010241	active site
216591010242	homotetramer interface [polypeptide binding]; other site
216591010243	HMMPfam hit to PF00576, Transthyretin precursor (formerly preal, score 4.4e-64
216591010244	Predicted membrane protein [Function unknown]; Region: COG3748
216591010245	Protein of unknown function (DUF989); Region: DUF989; pfam06181
216591010246	Cytochrome c; Region: Cytochrom_C; pfam00034
216591010247	HMMPfam hit to PF06181, Protein of unknown function (DUF989), score 7.5e-211
216591010248	8 probable transmembrane helices predicted for BCAL2031 by TMHMM2.0 at aa 15-34, 89-111, 121-138, 151-173, 177-199, 226-248, 253-272 and 279-298
216591010249	PS00190 Cytochrome c family heme-binding site signature.
216591010250	ACT domain; Region: ACT_3; pfam10000
216591010251	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3602
216591010252	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591010253	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591010254	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591010255	dimerization interface [polypeptide binding]; other site
216591010256	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-28
216591010257	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.4e-19
216591010258	PS00044 Bacterial regulatory proteins, lysR family signature.
216591010259	Predicted helix-turn-helix motif with score 1883.000, SD 5.60 at aa 18-39, sequence LNFSRAADEVGLTPAAVSHQIK
216591010260	hypothetical protein; Provisional; Region: PRK09266
216591010261	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
216591010262	substrate-cofactor binding pocket; other site
216591010263	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591010264	homodimer interface [polypeptide binding]; other site
216591010265	catalytic residue [active]
216591010266	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cl10015
216591010267	homotrimer interaction site [polypeptide binding]; other site
216591010268	putative active site [active]
216591010269	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591010270	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 3.9e-31
216591010271	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591010272	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591010273	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
216591010274	putative effector binding pocket; other site
216591010275	putative dimerization interface [polypeptide binding]; other site
216591010276	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.3e-15
216591010277	Predicted helix-turn-helix motif with score 1815.000, SD 5.37 at aa 11-32, sequence GSFTKAADTLHMSRTTVTQLVQ
216591010278	PS00044 Bacterial regulatory proteins, lysR family signature.
216591010279	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.3e-45
216591010280	ureidoglycolate hydrolase; Provisional; Region: PRK03606
216591010281	Ureidoglycolate hydrolase [Nucleotide transport and metabolism]; Region: DAL3; COG3194
216591010282	HMMPfam hit to PF04115, Ureidoglycolate hydrolase, score 5.3e-90
216591010283	allantoicase; Provisional; Region: PRK13257
216591010284	Allantoicase repeat; Region: Allantoicase; pfam03561
216591010285	Allantoicase repeat; Region: Allantoicase; pfam03561
216591010286	HMMPfam hit to PF03561, Allantoicase repeat, score 6.1e-78
216591010287	HMMPfam hit to PF03561, Allantoicase repeat, score 3.5e-82
216591010288	OHCU decarboxylase; Region: UHCUDC; TIGR03164
216591010289	putative urate catabolism protein; Region: uraD_N-term-dom; TIGR03212
216591010290	Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins; Region: CE4_PuuE_SpCDA1; cd10977
216591010291	active site
216591010292	catalytic site [active]
216591010293	tetramer interface [polypeptide binding]; other site
216591010294	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 6e-15
216591010295	Hydantoin racemase [Amino acid transport and metabolism]; Region: COG4126
216591010296	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase, score 1.3e-06
216591010297	uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain; Region: SLC-NCS1sbd_u1; cd11555
216591010298	Permease for cytosine/purines, uracil, thiamine, allantoin; Region: Transp_cyt_pur; pfam02133
216591010299	Na binding site [ion binding]; other site
216591010300	putative substrate binding site [chemical binding]; other site
216591010301	12 probable transmembrane helices predicted for BCAL2042 by TMHMM2.0 at aa 87-109, 114-136, 168-190, 205-227, 239-261, 281-303, 323-345, 365-387, 400-422, 432-454, 483-505 and 509-526
216591010302	HMMPfam hit to PF02133, Permease for cytosine/purines, uracil,, score 1.3e-80
216591010303	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010304	Transcriptional regulators [Transcription]; Region: GntR; COG1802
216591010305	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591010306	DNA-binding site [nucleotide binding]; DNA binding site
216591010307	FCD domain; Region: FCD; pfam07729
216591010308	HMMPfam hit to PF07729, FCD domain, score 3.6e-19
216591010309	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 2.5e-18
216591010310	PS00043 Bacterial regulatory proteins, gntR family signature.
216591010311	Predicted helix-turn-helix motif with score 1514.000, SD 4.34 at aa 39-60, sequence LTEAQLCDVFGVKRGTIRQALA
216591010312	LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein; Region: Peptidase_S66; cd07025
216591010313	dimer interface [polypeptide binding]; other site
216591010314	catalytic triad [active]
216591010315	HMMPfam hit to PF02016, LD-carboxypeptidase, score 2.7e-51
216591010316	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
216591010317	nucleoside/Zn binding site; other site
216591010318	dimer interface [polypeptide binding]; other site
216591010319	catalytic motif [active]
216591010320	HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 2.3e-39
216591010321	PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.
216591010322	Domain of unknown function (DUF1992); Region: DUF1992; cl08096
216591010323	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591010324	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591010325	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591010326	putative substrate translocation pore; other site
216591010327	12 probable transmembrane helices predicted for BCAL2047 by TMHMM2.0 at aa 21-43, 58-80, 85-107, 117-139, 146-168, 178-197, 237-259, 269-291, 303-320, 325-347, 360-382 and 392-414
216591010328	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.3e-49
216591010329	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591010330	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010331	Transcriptional regulators [Transcription]; Region: PhnF; COG2188
216591010332	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591010333	DNA-binding site [nucleotide binding]; DNA binding site
216591010334	UTRA domain; Region: UTRA; pfam07702
216591010335	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 5.8e-25
216591010336	Predicted helix-turn-helix motif with score 1095.000, SD 2.92 at aa 38-59, sequence PSEHELCAMFDVSRITVRQALG
216591010337	HMMPfam hit to PF07702, UTRA domain, score 3.5e-46
216591010338	putative oxidoreductase; Provisional; Region: PRK08275
216591010339	L-aspartate oxidase; Provisional; Region: PRK06175
216591010340	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
216591010341	HMMPfam hit to PF00890, FAD binding domain, score 2e-10
216591010342	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidore, score 0.0013
216591010343	HMMPfam hit to PF02910, Fumarate reductase/succinate dehydroge, score 1.1e-05
216591010344	RPB11 and RPB3 subunits of RNA polymerase; Region: RNAP_RPB11_RPB3; cl11409
216591010345	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
216591010346	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0021
216591010347	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.00029
216591010348	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591010349	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
216591010350	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
216591010351	substrate binding pocket [chemical binding]; other site
216591010352	membrane-bound complex binding site; other site
216591010353	NosL; Region: NosL; cl01769
216591010354	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591010355	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591010356	dimer interface [polypeptide binding]; other site
216591010357	conserved gate region; other site
216591010358	putative PBP binding loops; other site
216591010359	ABC-ATPase subunit interface; other site
216591010360	6 probable transmembrane helices predicted for BCAL2052 by TMHMM2.0 at aa 39-56, 97-119, 132-151, 156-175, 196-218 and 255-273
216591010361	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.6e-18
216591010362	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591010363	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591010364	Walker A/P-loop; other site
216591010365	ATP binding site [chemical binding]; other site
216591010366	Q-loop/lid; other site
216591010367	ABC transporter signature motif; other site
216591010368	Walker B; other site
216591010369	D-loop; other site
216591010370	H-loop/switch region; other site
216591010371	HMMPfam hit to PF00005, ABC transporter, score 2.7e-59
216591010372	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010373	PS00211 ABC transporters family signature.
216591010374	HEAT repeats; Region: HEAT_2; pfam13646
216591010375	FOG: HEAT repeat [Energy production and conversion]; Region: COG1413
216591010376	HMMPfam hit to PF03130, PBS lyase HEAT-like repeat, score 0.018
216591010377	HMMPfam hit to PF02985, HEAT repeat, score 0.0013
216591010378	HMMPfam hit to PF03130, PBS lyase HEAT-like repeat, score 0.05
216591010379	HMMPfam hit to PF03130, PBS lyase HEAT-like repeat, score 0.00019
216591010380	HMMPfam hit to PF02985, HEAT repeat, score 1.6
216591010381	HMMPfam hit to PF03130, PBS lyase HEAT-like repeat, score 7.9e-05
216591010382	HMMPfam hit to PF03130, PBS lyase HEAT-like repeat, score 2.9e-05
216591010383	HMMPfam hit to PF02985, HEAT repeat, score 0.061
216591010384	Protein of unknown function (DUF971); Region: DUF971; pfam06155
216591010385	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591010386	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084
216591010387	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 1.1e-36
216591010388	PS00895 3-hydroxyisobutyrate dehydrogenase signature.
216591010389	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_15; cd04673
216591010390	nudix motif; other site
216591010391	HMMPfam hit to PF00293, NUDIX domain, score 5.4e-27
216591010392	PS00893 mutT domain signature.
216591010393	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
216591010394	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591010395	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
216591010396	Coenzyme A binding pocket [chemical binding]; other site
216591010397	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2e-16
216591010398	2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]; Region: LigT; COG1514
216591010399	HMMPfam hit to PF02834, 2',5' RNA ligase family, score 0.0002
216591010400	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
216591010401	active site
216591010402	catalytic site [active]
216591010403	substrate binding site [chemical binding]; other site
216591010404	HMMPfam hit to PF00929, Exonuclease, score 2.5e-25
216591010405	GMP synthase; Reviewed; Region: guaA; PRK00074
216591010406	Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742
216591010407	AMP/PPi binding site [chemical binding]; other site
216591010408	candidate oxyanion hole; other site
216591010409	catalytic triad [active]
216591010410	potential glutamine specificity residues [chemical binding]; other site
216591010411	The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997
216591010412	ATP Binding subdomain [chemical binding]; other site
216591010413	Ligand Binding sites [chemical binding]; other site
216591010414	Dimerization subdomain; other site
216591010415	HMMPfam hit to PF00958, GMP synthase C terminal domain, score 1.6e-47
216591010416	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010417	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 1.7e-38
216591010418	PS00442 Glutamine amidotransferases class-I active site.
216591010419	4 probable transmembrane helices predicted for BCAL2062 by TMHMM2.0 at aa 7-29, 44-66, 73-95 and 105-127
216591010420	inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567
216591010421	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl17186
216591010422	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein.  IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a...; Region: CBS_pair_IMPDH; cd04601
216591010423	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
216591010424	active site
216591010425	HMMPfam hit to PF00478, IMP dehydrogenase / GMP reductase domain, score 5e-240
216591010426	PS00487 IMP dehydrogenase / GMP reductase signature.
216591010427	HMMPfam hit to PF00571, CBS domain pair, score 1.7e-26
216591010428	Predicted metal-binding integral membrane protein (DUF2182); Region: DUF2182; pfam09948
216591010429	6 probable transmembrane helices predicted for BCAL2064 by TMHMM2.0 at aa 13-35, 72-94, 107-129, 144-166, 214-236 and 246-268
216591010430	Bacterial protein of unknown function (DUF899); Region: DUF899; pfam05988
216591010431	HMMPfam hit to PF05988, Bacterial protein of unknown function (DUF89, score 2.8e-140
216591010432	putative DNA-binding protein (pseudogene);CDS contains a frameshift after codon 48. Similar to Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus) hypothetical protein UniProt:Q46WC1 (EMBL:CP000090) (407 aa) fasta scores: E()=1.9e-96, 73.153% id in 406 aa
216591010433	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591010434	HMMPfam hit to PF08279, HTH domain, score 0.0026
216591010435	Predicted helix-turn-helix motif with score 1378.000, SD 3.88 at aa 316-337, sequence WSSSALALALGASQRTVQRALD
216591010436	Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]; Region: COG3823
216591010437	Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]; Region: COG3823
216591010438	10 probable transmembrane helices predicted for BCAL2068 by TMHMM2.0 at aa 5-24, 39-58, 65-84, 89-111, 118-140, 155-177, 190-212, 227-249, 256-278 and 283-302
216591010439	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2.5e-05
216591010440	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2914
216591010441	HMMPfam hit to PF03658, Uncharacterised protein family (UPF0125), score 6.8e-39
216591010442	Coenzyme Q-binding protein COQ10p and similar proteins; Region: COQ10p_like; cd07813
216591010443	putative coenzyme Q binding site [chemical binding]; other site
216591010444	HMMPfam hit to PF03364, Streptomyces cyclase/dehydrase, score 9e-45
216591010445	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
216591010446	SmpB-tmRNA interface; other site
216591010447	HMMPfam hit to PF01668, SmpB protein, score 3.8e-37
216591010448	PS01317 Protein smpB signature.
216591010449	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
216591010450	Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form...; Region: Band_7_stomatin_like; cd03403
216591010451	HMMPfam hit to PF01145, SPFH domain / Band, score 6.4e-73
216591010452	HMMPfam hit to PF01957, Nodulation efficiency protein D (NfeD), score 1.4e-06
216591010453	2 probable transmembrane helices predicted for BCAL2073 by TMHMM2.0 at aa 17-39 and 54-76
216591010454	phosphoenolpyruvate synthase; Validated; Region: PRK06464
216591010455	Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326
216591010456	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
216591010457	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
216591010458	HMMPfam hit to PF02896, PEP-utilising enzyme, TIM barrel doma, score 1.3e-59
216591010459	PS00742 PEP-utilizing enzymes signature 2.
216591010460	HMMPfam hit to PF00391, PEP-utilising enzyme, mobile domain, score 1.5e-40
216591010461	PS00370 PEP-utilizing enzymes phosphorylation site signature.
216591010462	HMMPfam hit to PF01326, Pyruvate phosphate dikinase, PEP/pyru, score 3.3e-141
216591010463	PEP synthetase regulatory protein; Provisional; Region: PRK05339
216591010464	HMMPfam hit to PF03618, Domain of unknown function (DUF299), score 4.4e-115
216591010465	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010466	rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566
216591010467	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
216591010468	HMMPfam hit to PF00588, SpoU rRNA Methylase family, score 8.6e-42
216591010469	bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182
216591010470	RNA/DNA hybrid binding site [nucleotide binding]; other site
216591010471	active site
216591010472	HMMPfam hit to PF01351, Ribonuclease HII, score 1.8e-75
216591010473	lipid-A-disaccharide synthase; Reviewed; Region: lpxB; PRK00025
216591010474	ipid-A-disaccharide synthase; Provisional; Region: PRK14089
216591010475	HMMPfam hit to PF02684, Lipid-A-disaccharide synthetase, score 3.7e-104
216591010476	UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289
216591010477	UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic...; Region: LbH_UDP-GlcNAc_AT; cd03351
216591010478	active site
216591010479	PS00101 Hexapeptide-repeat containing-transferases signature.
216591010480	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 2.7
216591010481	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 8.8
216591010482	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 2.8
216591010483	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 28
216591010484	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 2.6
216591010485	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.018
216591010486	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 2.2
216591010487	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
216591010488	HMMPfam hit to PF07977, FabA-like domain, score 3.6e-59
216591010489	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892
216591010490	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613
216591010491	UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2; Region: LbH_LpxD; cd03352
216591010492	trimer interface [polypeptide binding]; other site
216591010493	active site
216591010494	UDP-GlcNAc binding site [chemical binding]; other site
216591010495	lipid binding site [chemical binding]; lipid-binding site
216591010496	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 36
216591010497	PS00101 Hexapeptide-repeat containing-transferases signature.
216591010498	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.1
216591010499	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.94
216591010500	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.3
216591010501	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.012
216591010502	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.011
216591010503	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.69
216591010504	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.39
216591010505	PS00101 Hexapeptide-repeat containing-transferases signature.
216591010506	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 3.9
216591010507	HMMPfam hit to PF04613, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a, score 4.6e-34
216591010508	periplasmic chaperone; Provisional; Region: PRK10780
216591010509	Outer membrane protein (OmpH-like); Region: OmpH; smart00935
216591010510	HMMPfam hit to PF03938, Outer membrane protein (OmpH-like), score 4e-56
216591010511	outer membrane protein assembly complex, YaeT protein; Region: OM_YaeT; TIGR03303
216591010512	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
216591010513	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
216591010514	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
216591010515	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
216591010516	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
216591010517	Surface antigen; Region: Bac_surface_Ag; pfam01103
216591010518	HMMPfam hit to PF01103, Surface antigen, score 4.7e-65
216591010519	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 3.1e-20
216591010520	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 1.5e-19
216591010521	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 1.6e-19
216591010522	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 2.4e-14
216591010523	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 5.2e-17
216591010524	zinc metallopeptidase RseP; Provisional; Region: PRK10779
216591010525	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
216591010526	active site
216591010527	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
216591010528	protein binding site [polypeptide binding]; other site
216591010529	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
216591010530	putative substrate binding region [chemical binding]; other site
216591010531	HMMPfam hit to PF02163, Peptidase family M50, score 6.1e-74
216591010532	4 probable transmembrane helices predicted for BCAL2084 by TMHMM2.0 at aa 7-29, 100-122, 382-404 and 428-447
216591010533	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 0.0059
216591010534	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447
216591010535	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670
216591010536	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436
216591010537	DXP reductoisomerase C-terminal domain; Region: DXPR_C; pfam13288
216591010538	HMMPfam hit to PF08436, 1-deoxy-D-xylulose 5-phosphate reduct, score 7.3e-62
216591010539	HMMPfam hit to PF02670, 1-deoxy-D-xylulose 5-phosphate reduct, score 3.5e-68
216591010540	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
216591010541	Cytidylyltransferase family; Region: CTP_transf_1; pfam01148
216591010542	HMMPfam hit to PF01148, Cytidylyltransferase family, score 5.2e-54
216591010543	PS01315 Phosphatidate cytidylyltransferase signature.
216591010544	7 probable transmembrane helices predicted for BCAL2086 by TMHMM2.0 at aa 7-41, 51-73, 80-97, 107-129, 134-156, 176-198 and 205-227
216591010545	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010546	Undecaprenyl pyrophosphate synthase [Lipid metabolism]; Region: UppS; COG0020
216591010547	Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cd00475
216591010548	catalytic residue [active]
216591010549	putative FPP diphosphate  binding site; other site
216591010550	putative FPP binding hydrophobic cleft; other site
216591010551	dimer interface [polypeptide binding]; other site
216591010552	putative IPP diphosphate binding site; other site
216591010553	HMMPfam hit to PF01255, Putative undecaprenyl diphosphate syntha, score 1.3e-113
216591010554	PS01066 Undecaprenyl pyrophosphate synthetase family signature.
216591010555	ribosome recycling factor; Reviewed; Region: frr; PRK00083
216591010556	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another...; Region: RRF; cd00520
216591010557	hinge region; other site
216591010558	HMMPfam hit to PF01765, Ribosome recycling factor, score 9.8e-90
216591010559	UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and...; Region: AAK_UMPK-PyrH-Ec; cd04254
216591010560	putative nucleotide binding site [chemical binding]; other site
216591010561	uridine monophosphate binding site [chemical binding]; other site
216591010562	homohexameric interface [polypeptide binding]; other site
216591010563	HMMPfam hit to PF00696, Amino acid kinase family, score 4.1e-64
216591010564	elongation factor Ts; Provisional; Region: tsf; PRK09377
216591010565	UBA/TS-N domain; Region: UBA; pfam00627
216591010566	Elongation factor TS; Region: EF_TS; pfam00889
216591010567	Elongation factor TS; Region: EF_TS; pfam00889
216591010568	HMMPfam hit to PF00889, Elongation factor TS, score 9.8e-86
216591010569	PS01127 Elongation factor Ts signature 2.
216591010570	HMMPfam hit to PF00627, UBA/TS-N domain, score 1e-09
216591010571	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
216591010572	rRNA interaction site [nucleotide binding]; other site
216591010573	S8 interaction site; other site
216591010574	putative laminin-1 binding site; other site
216591010575	HMMPfam hit to PF00318, Ribosomal protein S2, score 6.9e-97
216591010576	PS00962 Ribosomal protein S2 signature 1.
216591010577	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
216591010578	active site
216591010579	HMMPfam hit to PF00557, metallopeptidase family M24, score 1.2e-85
216591010580	PS00680 Methionine aminopeptidase subfamily 1 signature.
216591010581	PII uridylyl-transferase; Provisional; Region: PRK03059
216591010582	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
216591010583	metal binding triad; other site
216591010584	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335
216591010585	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
216591010586	Zn2+ binding site [ion binding]; other site
216591010587	Mg2+ binding site [ion binding]; other site
216591010588	ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains; Region: ACT_UUR-like_1; cd04900
216591010589	C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains; Region: ACT_ACR-UUR-like_2; cd04899
216591010590	HMMPfam hit to PF01909, Nucleotidyltransferase domain, score 1.2e-10
216591010591	HMMPfam hit to PF08335, GlnD PII-uridylyltransferase, score 1.9e-104
216591010592	HMMPfam hit to PF01966, HD domain, score 3.2e-12
216591010593	HMMPfam hit to PF01842, ACT domain, score 0.0031
216591010594	HMMPfam hit to PF01842, ACT domain, score 0.00097
216591010595	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
216591010596	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
216591010597	RNA binding surface [nucleotide binding]; other site
216591010598	Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi); Region: PseudoU_synth; cl00130
216591010599	active site
216591010600	HMMPfam hit to PF01479, S4 domain, score 1.1e-10
216591010601	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 2.1e-07
216591010602	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
216591010603	active site
216591010604	catalytic residues [active]
216591010605	metal binding site [ion binding]; metal-binding site
216591010606	HMMPfam hit to PF01327, Polypeptide deformylase, score 9.7e-46
216591010607	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114
216591010608	NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956
216591010609	nucleotide binding pocket [chemical binding]; other site
216591010610	K-X-D-G motif; other site
216591010611	catalytic site [active]
216591010612	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
216591010613	NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119
216591010614	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cl14786
216591010615	Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo...; Region: BRCT; cd00027
216591010616	Dimer interface [polypeptide binding]; other site
216591010617	BRCT sequence motif; other site
216591010618	HMMPfam hit to PF00533, BRCA1 C Terminus (BRCT) domain, score 8.6e-20
216591010619	HMMPfam hit to PF00633, Helix-hairpin-helix motif, score 0.00031
216591010620	HMMPfam hit to PF03119, NAD-dependent DNA ligase C4 zinc fing, score 1e-12
216591010621	HMMPfam hit to PF03120, NAD-dependent DNA ligase OB-fold doma, score 1.4e-50
216591010622	PS01056 NAD-dependent DNA ligase signature 2.
216591010623	HMMPfam hit to PF01653, NAD-dependent DNA ligase adenylation, score 2.6e-169
216591010624	ZipA, C-terminal domain (FtsZ-binding); Region: ZipA_C; smart00771
216591010625	1 probable transmembrane helix predicted for BCAL2097 by TMHMM2.0 at aa 4-26
216591010626	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
216591010627	ATP-binding cassette domain of barmotin, a member of the SMC protein family; Region: ABC_SMC_barmotin; cd03278
216591010628	Walker A/P-loop; other site
216591010629	ATP binding site [chemical binding]; other site
216591010630	Q-loop/lid; other site
216591010631	SMC proteins Flexible Hinge Domain; Region: SMC_hinge; cl05797
216591010632	ATP-binding cassette domain of barmotin, a member of the SMC protein family; Region: ABC_SMC_barmotin; cd03278
216591010633	Q-loop/lid; other site
216591010634	ABC transporter signature motif; other site
216591010635	Walker B; other site
216591010636	D-loop; other site
216591010637	H-loop/switch region; other site
216591010638	HMMPfam hit to PF02463, RecF/RecN/SMC N terminal domain, score 2.3e-92
216591010639	HMMPfam hit to PF06470, SMC proteins Flexible Hinge Domain, score 2.3e-20
216591010640	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010641	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
216591010642	EamA-like transporter family; Region: EamA; pfam00892
216591010643	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.5e-09
216591010644	9 probable transmembrane helices predicted for BCAL2099 by TMHMM2.0 at aa 7-29, 33-55, 67-89, 93-115, 122-139, 154-171, 187-209, 214-236 and 248-267
216591010645	succinyldiaminopimelate transaminase; Provisional; Region: PRK09147
216591010646	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591010647	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591010648	homodimer interface [polypeptide binding]; other site
216591010649	catalytic residue [active]
216591010650	HMMPfam hit to PF00155, Aminotransferase class I and II, score 4.9e-38
216591010651	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional; Region: dapD; PRK11830
216591010652	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA; Region: LbH_THP_succinylT; cd03350
216591010653	trimer interface [polypeptide binding]; other site
216591010654	active site
216591010655	substrate binding site [chemical binding]; other site
216591010656	CoA binding site [chemical binding]; other site
216591010657	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 30
216591010658	PS00101 Hexapeptide-repeat containing-transferases signature.
216591010659	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.81
216591010660	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 3.9
216591010661	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.93
216591010662	Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine...; Region: ArsC_Yffb; cd03035
216591010663	ArsC family; Region: ArsC; pfam03960
216591010664	putative catalytic residues [active]
216591010665	HMMPfam hit to PF03960, ArsC family, score 6.7e-32
216591010666	succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK13009
216591010667	M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase; Region: M20_DapE_proteobac; cd03891
216591010668	metal binding site [ion binding]; metal-binding site
216591010669	dimer interface [polypeptide binding]; other site
216591010670	PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1.
216591010671	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 4.8e-52
216591010672	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 1.3e-37
216591010673	HemK family putative methylases; Region: hemK_fam; TIGR00536
216591010674	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591010675	S-adenosylmethionine binding site [chemical binding]; other site
216591010676	HMMPfam hit to PF05175, Methyltransferase small domain, score 1.5e-08
216591010677	HMMPfam hit to PF08242, Methyltransferase domain, score 0.0029
216591010678	PS00092 N-6 Adenine-specific DNA methylases signature.
216591010679	cardiolipin synthetase; Reviewed; Region: cls; PRK01642
216591010680	Putative catalytic domain, repeat 1, of Pseudomonas aeruginosa cardiolipin synthase and similar proteins; Region: PLDc_PaCLS_like_1; cd09155
216591010681	putative active site [active]
216591010682	catalytic site [active]
216591010683	Putative catalytic domain, repeat 2, of Pseudomonas aeruginosa cardiolipin synthase and similar proteins; Region: PLDc_PaCLS_like_2; cd09161
216591010684	putative active site [active]
216591010685	catalytic site [active]
216591010686	2 probable transmembrane helices predicted for BCAL2105 by TMHMM2.0 at aa 5-27 and 36-58
216591010687	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010688	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 3.3e-07
216591010689	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 2.4e-06
216591010690	Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per...; Region: GSH_Peroxidase; cd00340
216591010691	catalytic residues [active]
216591010692	dimer interface [polypeptide binding]; other site
216591010693	HMMPfam hit to PF00255, Glutathione peroxidase, score 2e-55
216591010694	PS00763 Glutathione peroxidases signature 2.
216591010695	PS00460 Glutathione peroxidases selenocysteine active site.
216591010696	putative ABC transporter ATP-binding protein; Provisional; Region: PRK10636
216591010697	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591010698	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591010699	ABC transporter; Region: ABC_tran_2; pfam12848
216591010700	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591010701	HMMPfam hit to PF00005, ABC transporter, score 3.4e-49
216591010702	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010703	PS00211 ABC transporters family signature.
216591010704	HMMPfam hit to PF00005, ABC transporter, score 7.9e-41
216591010705	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010706	PS00211 ABC transporters family signature.
216591010707	Protein of unknown function (DUF2866); Region: DUF2866; pfam11065
216591010708	DNA repair protein RadA; Provisional; Region: PRK11823
216591010709	Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121
216591010710	Walker A motif/ATP binding site; other site
216591010711	ATP binding site [chemical binding]; other site
216591010712	Walker B motif; other site
216591010713	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
216591010714	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010715	alanine racemase; Reviewed; Region: alr; PRK00053
216591010716	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827
216591010717	active site
216591010718	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
216591010719	substrate binding site [chemical binding]; other site
216591010720	catalytic residues [active]
216591010721	dimer interface [polypeptide binding]; other site
216591010722	HMMPfam hit to PF00842, Alanine racemase, C-terminal domain, score 2.6e-63
216591010723	HMMPfam hit to PF01168, Alanine racemase, N-terminal domain, score 3.3e-76
216591010724	PS00395 Alanine racemase pyridoxal-phosphate attachment site.
216591010725	lysophospholipid transporter LplT; Provisional; Region: PRK11195
216591010726	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591010727	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.3e-08
216591010728	10 probable transmembrane helices predicted for BCAL2111 by TMHMM2.0 at aa 13-30, 45-62, 83-105, 163-185, 223-245, 260-279, 286-305, 325-347, 372-391 and 395-414
216591010729	4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of...; Region: HMPP_kinase; cd01169
216591010730	dimer interface [polypeptide binding]; other site
216591010731	substrate binding site [chemical binding]; other site
216591010732	ATP binding site [chemical binding]; other site
216591010733	HMMPfam hit to PF08543, Phosphomethylpyrimidine kinase, score 9.1e-142
216591010734	Domain of unknown function (DUF1853); Region: DUF1853; pfam08907
216591010735	Family 4 Uracil-DNA glycosylase (UDG), found exclusively in thermophilic organisms; Region: UDG_F4_TTUDGA_like; cd10030
216591010736	Fe-S cluster binding site [ion binding]; other site
216591010737	active site
216591010738	HMMPfam hit to PF03167, Uracil DNA glycosylase superfamily, score 3.6e-33
216591010739	ribosomal-protein-alanine acetyltransferase; Region: rimI; TIGR01575
216591010740	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591010741	HMMPfam hit to PF08445, FR47-like protein, score 0.00034
216591010742	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.2e-18
216591010743	tRNA threonylcarbamoyl adenosine modification protein YeaZ; Region: T6A_YeaZ; TIGR03725
216591010744	Glycoprotease family; Region: Peptidase_M22; pfam00814
216591010745	HMMPfam hit to PF00814, Glycoprotease family, score 5.2e-41
216591010746	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010747	Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a...; Region: ACBP; cl00221
216591010748	acyl-CoA binding pocket [chemical binding]; other site
216591010749	CoA binding site [chemical binding]; other site
216591010750	HMMPfam hit to PF00887, Acyl CoA binding protein, score 5.9e-41
216591010751	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
216591010752	DEAD-like helicases superfamily; Region: DEXDc; smart00487
216591010753	ATP binding site [chemical binding]; other site
216591010754	Mg++ binding site [ion binding]; other site
216591010755	motif III; other site
216591010756	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591010757	nucleotide binding region [chemical binding]; other site
216591010758	ATP-binding site [chemical binding]; other site
216591010759	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 4.4e-64
216591010760	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
216591010761	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 8.5e-34
216591010762	isocitrate lyase; Provisional; Region: PRK15063
216591010763	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
216591010764	tetramer interface [polypeptide binding]; other site
216591010765	active site
216591010766	Mg2+/Mn2+ binding site [ion binding]; other site
216591010767	HMMPfam hit to PF00463, Isocitrate lyase family, score 1.7e-243
216591010768	PS00161 Isocitrate lyase signature.
216591010769	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591010770	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591010771	Ligand Binding Site [chemical binding]; other site
216591010772	HMMPfam hit to PF00582, Universal stress protein family, score 2.8e-18
216591010773	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591010774	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591010775	putative effector binding pocket; other site
216591010776	dimerization interface [polypeptide binding]; other site
216591010777	HMMPfam hit to PF03466, LysR substrate binding domain, score 1e-50
216591010778	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5e-15
216591010779	2-haloalkanoic acid dehalogenase, type II; Region: HAD_type_II; TIGR01428
216591010780	REG-2-like, HAD superfamily (subfamily IA) hydrolase; Region: DREG-2; TIGR02252
216591010781	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591010782	motif II; other site
216591010783	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1.6e-19
216591010784	malate synthase A; Region: malate_syn_A; TIGR01344
216591010785	Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to...; Region: malate_synt_A; cd00727
216591010786	active site
216591010787	HMMPfam hit to PF01274, Malate synthase, score 0
216591010788	PS00510 Malate synthase signature.
216591010789	Predicted helix-turn-helix motif with score 1613.000, SD 4.68 at aa 442-463, sequence HNLMEDAATAEISRSQVWQWIR
216591010790	GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cd06661
216591010791	putative active site pocket [active]
216591010792	dimerization interface [polypeptide binding]; other site
216591010793	putative catalytic residue [active]
216591010794	HMMPfam hit to PF03674, Uncharacterised protein family (UPF0131), score 3.9e-05
216591010795	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591010796	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591010797	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591010798	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591010799	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 4.3e-12
216591010800	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 0.00034
216591010801	Predicted helix-turn-helix motif with score 1610.000, SD 4.67 at aa 183-204, sequence ESLEHWASEVGASTRTISRLFK
216591010802	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 1.8e-05
216591010803	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591010804	Coenzyme A binding pocket [chemical binding]; other site
216591010805	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.4e-14
216591010806	glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406
216591010807	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
216591010808	active site
216591010809	HIGH motif; other site
216591010810	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
216591010811	active site
216591010812	KMSKS motif; other site
216591010813	HMMPfam hit to PF00749, tRNA synthetases class I (E and Q), cata, score 1.4e-137
216591010814	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591010815	hypothetical protein; Provisional; Region: PRK10279
216591010816	Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1; Region: Pat_PNPLA6_PNPLA7_NTE1_like; cd07205
216591010817	nucleophile elbow; other site
216591010818	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010819	HMMPfam hit to PF01734, Patatin-like phospholipase, score 5.7e-47
216591010820	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
216591010821	NlpC/P60 family; Region: NLPC_P60; pfam00877
216591010822	HMMPfam hit to PF00877, NlpC/P60 family, score 5.2e-49
216591010823	1 probable transmembrane helix predicted for BCAL2128 by TMHMM2.0 at aa 13-30
216591010824	ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]; Region: COG4172
216591010825	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591010826	Walker A/P-loop; other site
216591010827	ATP binding site [chemical binding]; other site
216591010828	Q-loop/lid; other site
216591010829	ABC transporter signature motif; other site
216591010830	Walker B; other site
216591010831	D-loop; other site
216591010832	H-loop/switch region; other site
216591010833	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591010834	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591010835	Walker A/P-loop; other site
216591010836	ATP binding site [chemical binding]; other site
216591010837	Q-loop/lid; other site
216591010838	ABC transporter signature motif; other site
216591010839	Walker B; other site
216591010840	D-loop; other site
216591010841	H-loop/switch region; other site
216591010842	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591010843	HMMPfam hit to PF00005, ABC transporter, score 4.4e-64
216591010844	PS00211 ABC transporters family signature.
216591010845	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010846	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 1.4e-05
216591010847	HMMPfam hit to PF00005, ABC transporter, score 5.5e-55
216591010848	PS00211 ABC transporters family signature.
216591010849	PS00017 ATP/GTP-binding site motif A (P-loop).
216591010850	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4239
216591010851	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591010852	dimer interface [polypeptide binding]; other site
216591010853	conserved gate region; other site
216591010854	putative PBP binding loops; other site
216591010855	ABC-ATPase subunit interface; other site
216591010856	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.4e-46
216591010857	4 probable transmembrane helices predicted for BCAL2130 by TMHMM2.0 at aa 34-56, 161-183, 204-226 and 321-343
216591010858	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591010859	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4174
216591010860	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591010861	dimer interface [polypeptide binding]; other site
216591010862	conserved gate region; other site
216591010863	putative PBP binding loops; other site
216591010864	ABC-ATPase subunit interface; other site
216591010865	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.3e-50
216591010866	6 probable transmembrane helices predicted for BCAL2131 by TMHMM2.0 at aa 9-31, 119-141, 153-175, 205-227, 264-286 and 314-336
216591010867	PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1.
216591010868	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
216591010869	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_14; cd08497
216591010870	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 1e-60
216591010871	PS01310 ATP1G1 / PLM / MAT8 family signature.
216591010872	2 probable transmembrane helices predicted for BCAL2133 by TMHMM2.0 at aa 13-35 and 55-77
216591010873	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
216591010874	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 6.1e-152
216591010875	10 probable transmembrane helices predicted for BCAL2134 by TMHMM2.0 at aa 7-29, 359-381, 429-451, 456-478, 550-569, 891-913, 920-939, 949-971, 990-1012 and 1027-1049
216591010876	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591010877	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591010878	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591010879	2 probable transmembrane helices predicted for BCAL2135 by TMHMM2.0 at aa 15-37 and 44-66
216591010880	HMMPfam hit to PF00529, HlyD family secretion protein, score 5.5e-07
216591010881	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591010882	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010883	HMMPfam hit to PF02321, Outer membrane efflux protein, score 9.2e-30
216591010884	HMMPfam hit to PF02321, Outer membrane efflux protein, score 4.9e-41
216591010885	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591010886	transcriptional regulatory protein YedW; Provisional; Region: PRK11517
216591010887	DNA binding site [nucleotide binding]
216591010888	Transcriptional regulatory protein, C terminal; Region: Trans_reg_C; smart00862
216591010889	HMMPfam hit to PF00486, Transcriptional regulatory protein, C ter, score 7.8e-15
216591010890	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591010891	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591010892	dimerization interface [polypeptide binding]; other site
216591010893	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591010894	dimer interface [polypeptide binding]; other site
216591010895	phosphorylation site [posttranslational modification]
216591010896	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591010897	ATP binding site [chemical binding]; other site
216591010898	Mg2+ binding site [ion binding]; other site
216591010899	G-X-G motif; other site
216591010900	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.3e-29
216591010901	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 0.00055
216591010902	HMMPfam hit to PF00672, HAMP domain, score 3.8e-15
216591010903	2 probable transmembrane helices predicted for BCAL2138 by TMHMM2.0 at aa 21-43 and 161-183
216591010904	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591010905	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591010906	active site
216591010907	phosphorylation site [posttranslational modification]
216591010908	intermolecular recognition site; other site
216591010909	dimerization interface [polypeptide binding]; other site
216591010910	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591010911	DNA binding site [nucleotide binding]
216591010912	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1.1e-24
216591010913	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.6e-28
216591010914	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591010915	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010916	cytochrome o ubiquinol oxidase subunit IV; Region: CyoD; TIGR02847
216591010917	3 probable transmembrane helices predicted for BCAL2141 by TMHMM2.0 at aa 20-42, 47-69 and 79-101
216591010918	HMMPfam hit to PF03626, Prokaryotic Cytochrome C oxidase subunit IV, score 6.1e-36
216591010919	Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously...; Region: Ubiquinol_oxidase_III; cd02863
216591010920	Subunit I/III interface [polypeptide binding]; other site
216591010921	Subunit III/IV interface [polypeptide binding]; other site
216591010922	HMMPfam hit to PF00510, Cytochrome c oxidase subunit III, score 6.9e-05
216591010923	5 probable transmembrane helices predicted for BCAL2142 by TMHMM2.0 at aa 23-45, 65-87, 94-111, 134-156 and 177-199
216591010924	Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843
216591010925	Ubiquinol oxidase subunit I.  Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously pumps protons...; Region: Ubiquinol_Oxidase_I; cd01662
216591010926	D-pathway; other site
216591010927	Putative ubiquinol binding site [chemical binding]; other site
216591010928	Low-spin heme (heme b) binding site [chemical binding]; other site
216591010929	Putative water exit pathway; other site
216591010930	Binuclear center (heme o3/CuB) [ion binding]; other site
216591010931	K-pathway; other site
216591010932	Putative proton exit pathway; other site
216591010933	15 probable transmembrane helices predicted for BCAL2143 by TMHMM2.0 at aa 15-37, 57-79, 104-126, 139-161, 190-212, 232-254, 279-301, 308-330, 345-367, 380-402, 417-439, 456-478, 493-515, 585-607 and 611-630
216591010934	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010935	HMMPfam hit to PF00115, Cytochrome C and Quinol oxidase polypeptide, score 1.2e-267
216591010936	PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.
216591010937	cytochrome o ubiquinol oxidase subunit II; Region: CyoA; TIGR01433
216591010938	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; pfam00116
216591010939	COX Aromatic Rich Motif; Region: COX_ARM; pfam06481
216591010940	HMMPfam hit to PF06481, COX Aromatic Rich Motif, score 3.1e-13
216591010941	HMMPfam hit to PF00116, Cytochrome C oxidase subunit II, periplasmic, score 5.6e-05
216591010942	3 probable transmembrane helices predicted for BCAL2144 by TMHMM2.0 at aa 7-29, 44-66 and 85-107
216591010943	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591010944	NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846
216591010945	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
216591010946	14 probable transmembrane helices predicted for BCAL2145 by TMHMM2.0 at aa 4-26, 33-55, 80-102, 115-132, 137-156, 168-189, 204-226, 239-261, 271-293, 300-322, 327-349, 370-392, 402-424 and 445-465
216591010947	HMMPfam hit to PF00361, NADH-Ubiquinone/plastoquinone (complex I), score 2.6e-76
216591010948	aspartate kinase; Reviewed; Region: PRK06635
216591010949	AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive...; Region: AAK_AKii-LysC-BS; cd04261
216591010950	putative nucleotide binding site [chemical binding]; other site
216591010951	putative catalytic residues [active]
216591010952	putative Mg ion binding site [ion binding]; other site
216591010953	putative aspartate binding site [chemical binding]; other site
216591010954	ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins; Region: ACT_AKii-LysC-BS-like_1; cd04913
216591010955	putative allosteric regulatory site; other site
216591010956	ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains; Region: ACT_AKii-LysC-BS-like_2; cd04936
216591010957	HMMPfam hit to PF01842, ACT domain, score 1.4e-10
216591010958	HMMPfam hit to PF01842, ACT domain, score 2.5e-10
216591010959	HMMPfam hit to PF00696, Amino acid kinase family, score 1.9e-76
216591010960	PS00324 Aspartokinase signature.
216591010961	tRNA(Ile)-lysidine synthetase; Provisional; Region: tilS; PRK10660
216591010962	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
216591010963	Ligand Binding Site [chemical binding]; other site
216591010964	TilS substrate binding domain; Region: TilS; pfam09179
216591010965	TilS substrate C-terminal domain; Region: TilS_C; pfam11734
216591010966	HMMPfam hit to PF01171, PP-loop family, score 3.6e-72
216591010967	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated; Region: PRK05724
216591010968	acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional; Region: accA; CHL00198
216591010969	HMMPfam hit to PF03255, Acetyl co-enzyme A carboxylase carboxyltrans, score 1.6e-90
216591010970	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
216591010971	endonuclease III; Region: ENDO3c; smart00478
216591010972	minor groove reading motif; other site
216591010973	helix-hairpin-helix signature motif; other site
216591010974	substrate binding pocket [chemical binding]; other site
216591010975	active site
216591010976	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 8.4e-11
216591010977	cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260
216591010978	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
216591010979	active site
216591010980	HIGH motif; other site
216591010981	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
216591010982	KMSKS motif; other site
216591010983	Anticodon-binding domain of cysteinyl tRNA synthetases; Region: Anticodon_Ia_Cys; cd07963
216591010984	tRNA binding surface [nucleotide binding]; other site
216591010985	anticodon binding site; other site
216591010986	HMMPfam hit to PF01406, tRNA synthetases class I (C) catalytic d, score 1.8e-177
216591010987	TPR repeat; Region: TPR_11; pfam13414
216591010988	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591010989	binding surface
216591010990	TPR motif; other site
216591010991	1 probable transmembrane helix predicted for BCAL2151 by TMHMM2.0 at aa 12-34
216591010992	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 1.8e-05
216591010993	HMMPfam hit to PF00160, Cyclophilin type peptidyl-prolyl cis-tr, score 1.4e-52
216591010994	PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
216591010995	cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920
216591010996	substrate binding site [chemical binding]; other site
216591010997	HMMPfam hit to PF00160, Cyclophilin type peptidyl-prolyl cis-tr, score 8.4e-51
216591010998	PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
216591010999	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
216591011000	Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398
216591011001	putative active site [active]
216591011002	putative metal binding site [ion binding]; other site
216591011003	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 3.3e-10
216591011004	serine O-acetyltransferase; Region: cysE; TIGR01172
216591011005	Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of...; Region: LbH_SAT; cd03354
216591011006	trimer interface [polypeptide binding]; other site
216591011007	active site
216591011008	substrate binding site [chemical binding]; other site
216591011009	CoA binding site [chemical binding]; other site
216591011010	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 2.2
216591011011	PS00047 Histone H4 signature.
216591011012	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.0044
216591011013	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 4.6
216591011014	rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: LasT; COG0565
216591011015	SpoU rRNA Methylase family; Region: SpoU_methylase; cl17307
216591011016	HMMPfam hit to PF00588, SpoU rRNA Methylase family, score 1.1e-30
216591011017	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]; Region: SuhB; COG0483
216591011018	IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be...; Region: IMPase; cd01639
216591011019	active site
216591011020	dimerization interface [polypeptide binding]; other site
216591011021	HMMPfam hit to PF00459, Inositol monophosphatase family, score 3.5e-87
216591011022	PS00629 Inositol monophosphatase family signature 1.
216591011023	PS00630 Inositol monophosphatase family signature 2.
216591011024	Uncharacterized FAD-dependent dehydrogenases [General function prediction only]; Region: COG2509
216591011025	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591011026	HMMPfam hit to PF03486, HI0933-like protein, score 0.0028
216591011027	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 7.2e-06
216591011028	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 0.00024
216591011029	EthD domain; Region: EthD; cl17553
216591011030	HMMPfam hit to PF07110, EthD protein, score 9.8e-23
216591011031	DNA mismatch repair protein MutS; Provisional; Region: PRK05399
216591011032	MutS domain I; Region: MutS_I; pfam01624
216591011033	MutS domain II; Region: MutS_II; pfam05188
216591011034	MutS domain III; Region: MutS_III; pfam05192
216591011035	ATP-binding cassette domain of MutS1 homolog; Region: ABC_MutS1; cd03284
216591011036	Walker A/P-loop; other site
216591011037	ATP binding site [chemical binding]; other site
216591011038	Q-loop/lid; other site
216591011039	ABC transporter signature motif; other site
216591011040	Walker B; other site
216591011041	D-loop; other site
216591011042	H-loop/switch region; other site
216591011043	HMMPfam hit to PF01624, MutS domain I, score 3.2e-73
216591011044	HMMPfam hit to PF05188, MutS domain II, score 7.3e-20
216591011045	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011046	HMMPfam hit to PF05192, MutS domain III, score 2.7e-62
216591011047	HMMPfam hit to PF05190, MutS family domain IV, score 9.8e-46
216591011048	HMMPfam hit to PF00488, MutS domain V, score 9.9e-158
216591011049	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011050	PS00486 DNA mismatch repair proteins mutS family signature.
216591011051	FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]; Region: SlpA; COG1047
216591011052	Uncharacterized conserved protein [Function unknown]; Region: COG2850
216591011053	HMMPfam hit to PF08007, Cupin superfamily protein, score 8.2e-112
216591011054	Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Region: PhnP; COG1235
216591011055	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 1.4e-13
216591011056	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011057	Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]; Region: NlpB; COG3317
216591011058	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011059	Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950
216591011060	dihydrodipicolinate synthase; Region: dapA; TIGR00674
216591011061	dimer interface [polypeptide binding]; other site
216591011062	active site
216591011063	catalytic residue [active]
216591011064	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 1.7e-137
216591011065	PS00666 Dihydrodipicolinate synthetase signature 2.
216591011066	HMMPfam hit to PF08241, Methyltransferase domain, score 0.00075
216591011067	HMMPfam hit to PF08242, Methyltransferase domain, score 8.2e-07
216591011068	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
216591011069	active site
216591011070	HIGH motif; other site
216591011071	dimer interface [polypeptide binding]; other site
216591011072	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
216591011073	active site
216591011074	KMSKS motif; other site
216591011075	HMMPfam hit to PF00579, tRNA synthetases class I (W and Y), score 2.7e-72
216591011076	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591011077	Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the...; Region: S2P-M50_like_1; cd06158
216591011078	Peptidase family M50; Region: Peptidase_M50; pfam02163
216591011079	active site
216591011080	putative substrate binding region [chemical binding]; other site
216591011081	6 probable transmembrane helices predicted for BCAL2170 by TMHMM2.0 at aa 9-31, 56-78, 91-113, 128-150, 171-193 and 197-219
216591011082	HMMPfam hit to PF02163, Peptidase family M50, score 4.3e-27
216591011083	Telomere recombination; Region: Sua5_yciO_yrdC; cl00305
216591011084	HMMPfam hit to PF01300, yrdC domain, score 9.6e-56
216591011085	Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]; Region: COG0613
216591011086	Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound; Region: PHP_HisPPase_AMP; cd07438
216591011087	active site
216591011088	Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound; Region: PHP_HisPPase_AMP; cd07438
216591011089	HMMPfam hit to PF02811, PHP domain, score 5.8e-22
216591011090	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591011091	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591011092	Novel bacterial esterase that cleaves esters on halogenated cyclic compounds; Region: Esterase_713_like; cl17303
216591011093	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3e-12
216591011094	PS00120 Lipases, serine active site.
216591011095	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657
216591011096	dinuclear metal binding motif [ion binding]; other site
216591011097	HMMPfam hit to PF04305, Protein of unknown function (DUF455), score 2e-95
216591011098	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663
216591011099	Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon...; Region: LbH_gamma_CA_like; cd04645
216591011100	trimer interface [polypeptide binding]; other site
216591011101	putative metal binding site [ion binding]; other site
216591011102	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 20
216591011103	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 43
216591011104	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.7
216591011105	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.024
216591011106	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011107	Hsp33-like chaperonin; Reviewed; Region: hslO; PRK00114
216591011108	Heat shock protein 33 (Hsp33):  Cytosolic protein that acts as a molecular chaperone under oxidative conditions.  In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat...; Region: Hsp33; cd00498
216591011109	dimerization interface [polypeptide binding]; other site
216591011110	domain crossover interface; other site
216591011111	redox-dependent activation switch; other site
216591011112	HMMPfam hit to PF01430, Hsp33 protein, score 1.5e-74
216591011113	1 probable transmembrane helix predicted for BCAL2177 by TMHMM2.0 at aa 13-35
216591011114	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011115	cell division protein FtsB; Reviewed; Region: ftsB; PRK00888
216591011116	Septum formation initiator [Cell division and chromosome partitioning]; Region: COG2919
216591011117	HMMPfam hit to PF04977, Septum formation initiator, score 2.9e-24
216591011118	enolase; Provisional; Region: eno; PRK00077
216591011119	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
216591011120	dimer interface [polypeptide binding]; other site
216591011121	metal binding site [ion binding]; metal-binding site
216591011122	substrate binding pocket [chemical binding]; other site
216591011123	HMMPfam hit to PF00113, Enolase, C-terminal TIM barrel domain, score 2.6e-173
216591011124	PS00164 Enolase signature.
216591011125	HMMPfam hit to PF03952, Enolase, N-terminal domain, score 3.8e-64
216591011126	2-dehydro-3-deoxyphosphooctonate aldolase; Provisional; Region: PRK05198
216591011127	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
216591011128	HMMPfam hit to PF00793, DAHP synthetase I family, score 8.4e-105
216591011129	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011130	PS00284 Serpins signature.
216591011131	CTP synthetase; Validated; Region: pyrG; PRK05380
216591011132	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
216591011133	Catalytic site [active]
216591011134	active site
216591011135	UTP binding site [chemical binding]; other site
216591011136	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
216591011137	active site
216591011138	putative oxyanion hole; other site
216591011139	catalytic triad [active]
216591011140	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 2.1e-66
216591011141	PS00442 Glutamine amidotransferases class-I active site.
216591011142	HMMPfam hit to PF06418, CTP synthase N-terminus, score 1.5e-209
216591011143	1 probable transmembrane helix predicted for BCAL2181 by TMHMM2.0 at aa 5-27
216591011144	Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: GrsT; COG3208
216591011145	Novel bacterial esterase that cleaves esters on halogenated cyclic compounds; Region: Esterase_713_like; cl17303
216591011146	PS00120 Lipases, serine active site.
216591011147	Domain of unknown function (DUF4131); Region: DUF4131; pfam13567
216591011148	DNA internalization-related competence protein ComEC/Rec2; Region: ComEC_Rec2; TIGR00361
216591011149	Competence protein; Region: Competence; pfam03772
216591011150	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 1.8e-13
216591011151	HMMPfam hit to PF03772, Competence protein, score 8.6e-52
216591011152	7 probable transmembrane helices predicted for BCAL2183 by TMHMM2.0 at aa 7-29, 33-55, 62-84, 273-295, 308-330, 350-372 and 377-399
216591011153	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011154	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011155	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
216591011156	active site
216591011157	HMMPfam hit to PF01026, TatD related DNase, score 7.8e-77
216591011158	PS01091 Uncharacterized protein family UPF0006 signature 3.
216591011159	lipoprotein releasing system, ATP-binding protein; Region: LolD_lipo_ex; TIGR02211
216591011160	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
216591011161	Walker A/P-loop; other site
216591011162	ATP binding site [chemical binding]; other site
216591011163	Q-loop/lid; other site
216591011164	ABC transporter signature motif; other site
216591011165	Walker B; other site
216591011166	D-loop; other site
216591011167	H-loop/switch region; other site
216591011168	HMMPfam hit to PF00005, ABC transporter, score 4.1e-66
216591011169	PS00211 ABC transporters family signature.
216591011170	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011171	lipoprotein releasing system, transmembrane protein, LolC/E family; Region: lolCE; TIGR02212
216591011172	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
216591011173	FtsX-like permease family; Region: FtsX; pfam02687
216591011174	HMMPfam hit to PF02687, Predicted permease, score 1.9e-42
216591011175	4 probable transmembrane helices predicted for BCAL2186 by TMHMM2.0 at aa 24-46, 274-296, 329-351 and 384-406
216591011176	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011177	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4255
216591011178	ssDNA exonuclease RecJ; Provisional; Region: PRK11070
216591011179	DHH family; Region: DHH; pfam01368
216591011180	DHHA1 domain; Region: DHHA1; pfam02272
216591011181	HMMPfam hit to PF01368, DHH family, score 7e-53
216591011182	HMMPfam hit to PF02272, DHHA1 domain, score 2e-10
216591011183	peptide chain release factor 2; Validated; Region: prfB; PRK00578
216591011184	This domain is found in peptide chain release factors; Region: PCRF; smart00937
216591011185	RF-1 domain; Region: RF-1; pfam00472
216591011186	HMMPfam hit to PF03462, PCRF domain, score 1.7e-52
216591011187	HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase domain, score 1.1e-72
216591011188	lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484
216591011189	LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop; Region: LysRS_N; cd04322
216591011190	dimer interface [polypeptide binding]; other site
216591011191	putative anticodon binding site; other site
216591011192	Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three...; Region: LysRS_core; cd00775
216591011193	motif 1; other site
216591011194	active site
216591011195	motif 2; other site
216591011196	motif 3; other site
216591011197	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 5.4e-20
216591011198	HMMPfam hit to PF00152, tRNA synthetases class II (D, K and N), score 6.8e-127
216591011199	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591011200	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591011201	1 probable transmembrane helix predicted for BCAL2191 by TMHMM2.0 at aa 32-54
216591011202	HMMPfam hit to PF05433, Rickettsia 17 kDa surface antigen, score 4.3e-14
216591011203	Iron-sulphur cluster assembly; Region: Fe-S_assembly; pfam04384
216591011204	HMMPfam hit to PF04384, Protein of unknown function (DUF528), score 4.8e-41
216591011205	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
216591011206	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591011207	catalytic loop [active]
216591011208	iron binding site [ion binding]; other site
216591011209	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 1e-16
216591011210	PS00190 Cytochrome c family heme-binding site signature.
216591011211	PS00814 Adrenodoxin family, iron-sulfur binding region signature.
216591011212	chaperone protein HscA; Provisional; Region: hscA; PRK05183
216591011213	Nucleotide-binding domain of HscA and similar proteins; Region: HscA_like_NBD; cd10236
216591011214	nucleotide binding site [chemical binding]; other site
216591011215	putative NEF/HSP70 interaction site [polypeptide binding]; other site
216591011216	SBD interface [polypeptide binding]; other site
216591011217	HMMPfam hit to PF00012, Hsp70 protein, score 3.5e-222
216591011218	PS01036 Heat shock hsp70 proteins family signature 3.
216591011219	PS00329 Heat shock hsp70 proteins family signature 2.
216591011220	PS00297 Heat shock hsp70 proteins family signature 1.
216591011221	co-chaperone HscB; Provisional; Region: hscB; PRK03578
216591011222	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
216591011223	HSP70 interaction site [polypeptide binding]; other site
216591011224	HSCB C-terminal oligomerisation domain; Region: HSCB_C; pfam07743
216591011225	HMMPfam hit to PF07743, HSCB C-terminal oligomerisation domain, score 6.8e-23
216591011226	HMMPfam hit to PF00226, DnaJ domain, score 2.6e-06
216591011227	iron-sulfur cluster assembly protein IscA; Region: IscA; TIGR02011
216591011228	PS01152 Hypothetical hesB/yadR/yfhF family signature.
216591011229	HMMPfam hit to PF01521, Iron-sulphur cluster biosynthesis, score 1.9e-41
216591011230	NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Region: IscU; COG0822
216591011231	Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664
216591011232	trimerization site [polypeptide binding]; other site
216591011233	active site
216591011234	HMMPfam hit to PF01592, NifU-like N terminal domain, score 2.8e-78
216591011235	cysteine desulfurase; Provisional; Region: PRK14012
216591011236	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
216591011237	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591011238	catalytic residue [active]
216591011239	HMMPfam hit to PF00266, Aminotransferase class-V, score 1.9e-125
216591011240	HMMPfam hit to PF01212, Beta-eliminating lyase, score 2.5e-05
216591011241	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.
216591011242	Predicted transcriptional regulator [Transcription]; Region: COG1959
216591011243	iron-sulfur cluster assembly transcription factor IscR; Region: IscR; TIGR02010
216591011244	HMMPfam hit to PF02082, Transcriptional regulator, score 1.7e-49
216591011245	Protein-tyrosine-phosphatase [Signal transduction mechanisms]; Region: Wzb; COG0394
216591011246	Low molecular weight phosphatase family; Region: LMWPc; cd00115
216591011247	active site
216591011248	HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein, score 1.3e-55
216591011249	1 probable transmembrane helix predicted for BCAL2201 by TMHMM2.0 at aa 5-27
216591011250	Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]; Region: COG1139
216591011251	Uncharacterized ACR, YkgG family COG1556; Region: DUF162; pfam02589
216591011252	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
216591011253	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0012
216591011254	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591011255	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
216591011256	Cysteine-rich domain; Region: CCG; pfam02754
216591011257	Cysteine-rich domain; Region: CCG; pfam02754
216591011258	HMMPfam hit to PF02754, Cysteine-rich domain, score 4e-07
216591011259	HMMPfam hit to PF02754, Cysteine-rich domain, score 2.2e-14
216591011260	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591011261	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591011262	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591011263	Predicted helix-turn-helix motif with score 1773.000, SD 5.23 at aa 32-53, sequence VSLKELAQRTELHPSTAHRILN
216591011264	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 1.8e-29
216591011265	D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_S11; pfam00768
216591011266	Beta-lactamase enzyme family; Region: Beta-lactamase2; cl17872
216591011267	HMMPfam hit to PF00768, D-alanyl-D-alanine carboxypeptidase, score 1.6e-57
216591011268	Phasin protein; Region: Phasin_2; pfam09361
216591011269	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
216591011270	E3 interaction surface; other site
216591011271	lipoyl attachment site [posttranslational modification]; other site
216591011272	dihydrolipoamide dehydrogenase; Reviewed; Region: PRK06467
216591011273	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591011274	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591011275	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
216591011276	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 2.8e-48
216591011277	HMMPfam hit to PF01134, Glucose inhibited division protein A, score 9.4e-05
216591011278	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 8.4e-65
216591011279	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 2.2e-17
216591011280	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.
216591011281	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 7.3e-25
216591011282	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
216591011283	dihydrolipoamide acetyltransferase; Reviewed; Region: PRK11855
216591011284	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
216591011285	E3 interaction surface; other site
216591011286	lipoyl attachment site [posttranslational modification]; other site
216591011287	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
216591011288	E3 interaction surface; other site
216591011289	lipoyl attachment site [posttranslational modification]; other site
216591011290	e3 binding domain; Region: E3_binding; pfam02817
216591011291	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
216591011292	HMMPfam hit to PF00198, 2-oxoacid dehydrogenases acyltransferas, score 1.3e-124
216591011293	HMMPfam hit to PF02817, e3 binding domain, score 1.4e-18
216591011294	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 1.6e-25
216591011295	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
216591011296	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 3e-23
216591011297	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
216591011298	pyruvate dehydrogenase subunit E1; Reviewed; Region: aceE; PRK09405
216591011299	Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative...; Region: TPP_E1_EcPDC_like; cd02017
216591011300	dimer interface [polypeptide binding]; other site
216591011301	TPP-binding site [chemical binding]; other site
216591011302	PAS domain S-box; Region: sensory_box; TIGR00229
216591011303	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591011304	putative active site [active]
216591011305	heme pocket [chemical binding]; other site
216591011306	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591011307	dimer interface [polypeptide binding]; other site
216591011308	phosphorylation site [posttranslational modification]
216591011309	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591011310	ATP binding site [chemical binding]; other site
216591011311	Mg2+ binding site [ion binding]; other site
216591011312	G-X-G motif; other site
216591011313	2 probable transmembrane helices predicted for BCAL2210 by TMHMM2.0 at aa 35-57 and 283-302
216591011314	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011315	HMMPfam hit to PF00989, PAS fold, score 3.4e-15
216591011316	HMMPfam hit to PF08448, PAS fold, score 4e-10
216591011317	HMMPfam hit to PF08447, PAS fold, score 1.9e-07
216591011318	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.1e-10
216591011319	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 4.2e-31
216591011320	Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566
216591011321	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591011322	active site
216591011323	phosphorylation site [posttranslational modification]
216591011324	intermolecular recognition site; other site
216591011325	dimerization interface [polypeptide binding]; other site
216591011326	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591011327	DNA binding residues [nucleotide binding]
216591011328	dimerization interface [polypeptide binding]; other site
216591011329	HMMPfam hit to PF00072, Response regulator receiver domain, score 7.7e-35
216591011330	HMMPfam hit to PF08281, Sigma-70, region, score 1e-05
216591011331	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 7e-22
216591011332	PS00622 Bacterial regulatory proteins, luxR family signature.
216591011333	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional; Region: PRK14189
216591011334	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763
216591011335	NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080
216591011336	homodimer interface [polypeptide binding]; other site
216591011337	NADP binding site [chemical binding]; other site
216591011338	substrate binding site [chemical binding]; other site
216591011339	HMMPfam hit to PF00763, Tetrahydrofolate dehydrogenase/cyclohyd, score 1.7e-57
216591011340	HMMPfam hit to PF02882, Tetrahydrofolate dehydrogenase/cyclohyd, score 2e-111
216591011341	PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2.
216591011342	Zn-dependent oligopeptidases [Amino acid transport and metabolism]; Region: Dcp; COG0339
216591011343	Peptidase family M3 dipeptidyl carboxypeptidase (DCP); Region: M3A_DCP; cd06456
216591011344	active site
216591011345	Zn binding site [ion binding]; other site
216591011346	HMMPfam hit to PF01432, Peptidase family M3, score 1.6e-183
216591011347	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591011348	DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa; cd03586
216591011349	active site
216591011350	DNA polymerase IV; Validated; Region: PRK02406
216591011351	DNA binding site [nucleotide binding]
216591011352	HMMPfam hit to PF00817, impB/mucB/samB family, score 6.3e-99
216591011353	Aspartate racemase [Cell envelope biogenesis, outer membrane]; Region: RacX; COG1794
216591011354	aspartate racemase; Region: asp_race; TIGR00035
216591011355	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase, score 4.5e-44
216591011356	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591011357	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
216591011358	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591011359	putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; pfam13005
216591011360	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
216591011361	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
216591011362	HMMPfam hit to PF03050, Transposase IS66 family, score 1.1e-99
216591011363	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591011364	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
216591011365	HMMPfam hit to PF05717, IS66 Orf2 like protein, score 3.2e-62
216591011366	Transposase; Region: HTH_Tnp_1; pfam01527
216591011367	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591011368	HMMPfam hit to PF01527, Transposase, score 1.2e-10
216591011369	Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: ExoIII-like_AP-endo; cd09086
216591011370	putative catalytic site [active]
216591011371	putative phosphate binding site [ion binding]; other site
216591011372	active site
216591011373	metal binding site A [ion binding]; metal-binding site
216591011374	DNA binding site [nucleotide binding]
216591011375	putative AP binding site [nucleotide binding]; other site
216591011376	putative metal binding site B [ion binding]; other site
216591011377	HMMPfam hit to PF03372, Endonuclease/Exonuclease/phosphatase fa, score 3.7e-47
216591011378	PS00728 AP endonucleases family 1 signature 3.
216591011379	Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]; Region: COG1505
216591011380	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
216591011381	HMMPfam hit to PF00326, Prolyl oligopeptidase family, score 5.5e-69
216591011382	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011383	HMMPfam hit to PF02897, Prolyl oligopeptidase, N-terminal beta, score 3.7e-07
216591011384	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591011385	Response regulator receiver domain; Region: Response_reg; pfam00072
216591011386	active site
216591011387	phosphorylation site [posttranslational modification]
216591011388	intermolecular recognition site; other site
216591011389	dimerization interface [polypeptide binding]; other site
216591011390	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591011391	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
216591011392	Walker A motif; other site
216591011393	ATP binding site [chemical binding]; other site
216591011394	Walker B motif; other site
216591011395	arginine finger; other site
216591011396	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591011397	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 2.1e-11
216591011398	Predicted helix-turn-helix motif with score 1720.000, SD 5.05 at aa 481-502, sequence GRKVEAAERLGIGRNTITRKIQ
216591011399	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591011400	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3.4e-143
216591011401	HMMPfam hit to PF07728, ATPase family associated with various, score 0.0002
216591011402	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591011403	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591011404	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.4e-32
216591011405	Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852
216591011406	PAS domain; Region: PAS; smart00091
216591011407	putative active site [active]
216591011408	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591011409	dimer interface [polypeptide binding]; other site
216591011410	phosphorylation site [posttranslational modification]
216591011411	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591011412	ATP binding site [chemical binding]; other site
216591011413	Mg2+ binding site [ion binding]; other site
216591011414	G-X-G motif; other site
216591011415	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.3e-27
216591011416	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 9.8e-16
216591011417	glutamine synthetase; Provisional; Region: glnA; PRK09469
216591011418	Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951
216591011419	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
216591011420	PS00182 Glutamine synthetase class-I adenylation site.
216591011421	HMMPfam hit to PF00120, Glutamine synthetase, catalytic domain, score 2.3e-171
216591011422	PS00181 Glutamine synthetase putative ATP-binding region signature.
216591011423	HMMPfam hit to PF03951, Glutamine synthetase, beta-Grasp domain, score 6.8e-47
216591011424	PS00180 Glutamine synthetase signature 1.
216591011425	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125
216591011426	active site residue [active]
216591011427	Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Region: CinA; COG1058
216591011428	Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of...; Region: cinA; cd00885
216591011429	putative MPT binding site; other site
216591011430	HMMPfam hit to PF00994, Probable molybdopterin binding domain, score 1.7e-30
216591011431	Etoposide-induced protein 2.4 (EI24); Region: EI24; pfam07264
216591011432	6 probable transmembrane helices predicted for BCAL2227 by TMHMM2.0 at aa 21-43, 78-100, 128-150, 155-177, 198-220 and 230-252
216591011433	Sterol desaturase [Lipid metabolism]; Region: ERG3; COG3000
216591011434	Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; pfam04116
216591011435	4 probable transmembrane helices predicted for BCAL2228 by TMHMM2.0 at aa 40-59, 80-102, 127-149 and 190-212
216591011436	PQQ-dependent catabolism-associated beta-propeller protein; Region: PQQ_ABC_repeats; TIGR03866
216591011437	40-residue YVTN family beta-propeller repeat; Region: beta_rpt_yvtn; TIGR02276
216591011438	HrpA-like helicases [DNA replication, recombination, and repair]; Region: HrpA; COG1643
216591011439	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591011440	ATP binding site [chemical binding]; other site
216591011441	putative Mg++ binding site [ion binding]; other site
216591011442	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591011443	nucleotide binding region [chemical binding]; other site
216591011444	ATP-binding site [chemical binding]; other site
216591011445	Helicase associated domain (HA2); Region: HA2; pfam04408
216591011446	Oligonucleotide/oligosaccharide-binding (OB)-fold; Region: OB_NTP_bind; pfam07717
216591011447	Domain of unknown function (DUF3418); Region: DUF3418; pfam11898
216591011448	Domain of unknown function (DUF3418); Region: DUF3418; pfam11898
216591011449	HMMPfam hit to PF07717, Domain of unknown function (DUF1605), score 1.3e-20
216591011450	HMMPfam hit to PF04408, Helicase associated domain (HA2), score 4.7e-26
216591011451	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 9.3e-12
216591011452	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011453	N-acetylglutamate synthase; Validated; Region: PRK05279
216591011454	AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an...; Region: AAK_NAGS-ABP; cd04237
216591011455	putative feedback inhibition sensing region; other site
216591011456	putative nucleotide binding site [chemical binding]; other site
216591011457	putative substrate binding site [chemical binding]; other site
216591011458	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591011459	Coenzyme A binding pocket [chemical binding]; other site
216591011460	HMMPfam hit to PF00696, Amino acid kinase family, score 5.5e-14
216591011461	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.6e-12
216591011462	oxidative damage protection protein; Provisional; Region: PRK05408
216591011463	HMMPfam hit to PF04362, Bacterial Fe(2+) trafficking, score 1.3e-57
216591011464	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591011465	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591011466	putative substrate translocation pore; other site
216591011467	HMMPfam hit to PF00083, Sugar (and other) transporter, score 5.9e-07
216591011468	12 probable transmembrane helices predicted for BCAL2233 by TMHMM2.0 at aa 23-45, 60-82, 95-117, 127-149, 161-183, 193-215, 246-268, 283-305, 312-334, 338-360, 372-394 and 404-426
216591011469	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011470	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.2e-10
216591011471	PS00024 Hemopexin domain signature.
216591011472	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591011473	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591011474	HMMPfam hit to PF02515, CoA-transferase family III, score 4.1e-67
216591011475	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591011476	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591011477	active site
216591011478	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011479	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 6.2e-39
216591011480	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 0.00029
216591011481	PS00073 Acyl-CoA dehydrogenases signature 2.
216591011482	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 4.4e-17
216591011483	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
216591011484	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591011485	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591011486	dimerization interface [polypeptide binding]; other site
216591011487	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-19
216591011488	Predicted helix-turn-helix motif with score 1247.000, SD 3.43 at aa 16-37, sequence LHFGRAAKRLFISQPALSFDIR
216591011489	PS00044 Bacterial regulatory proteins, lysR family signature.
216591011490	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.9e-50
216591011491	putative aminotransferase; Validated; Region: PRK07480
216591011492	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591011493	inhibitor-cofactor binding pocket; inhibition site
216591011494	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591011495	catalytic residue [active]
216591011496	HMMPfam hit to PF00202, Aminotransferase class-III, score 6.7e-98
216591011497	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591011498	Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174
216591011499	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
216591011500	HMMPfam hit to PF00120, Glutamine synthetase, catalytic domain, score 4.9e-119
216591011501	Peptidase C26; Region: Peptidase_C26; pfam07722
216591011502	Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_2; cd01745
216591011503	catalytic triad [active]
216591011504	HMMPfam hit to PF07722, Peptidase C26, score 3.3e-104
216591011505	N-formylglutamate amidohydrolase; Region: FGase; cl01522
216591011506	HMMPfam hit to PF05013, N-formylglutamate amidohydrolase, score 1.6e-90
216591011507	N-formimino-L-glutamate deiminase; Validated; Region: PRK09229
216591011508	Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the...; Region: Met_dep_hydrolase_E; cd01313
216591011509	active site
216591011510	HMMPfam hit to PF01979, Amidohydrolase family, score 4.1e-20
216591011511	imidazolonepropionase; Validated; Region: PRK09356
216591011512	Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria; Region: Imidazolone-5PH; cd01296
216591011513	active site
216591011514	HMMPfam hit to PF01979, Amidohydrolase family, score 3.3e-08
216591011515	HMMPfam hit to PF07969, Amidohydrolase family, score 2.4e-07
216591011516	HutD; Region: HutD; pfam05962
216591011517	HMMPfam hit to PF05962, Bacterial protein of unknown function (DUF88, score 2.2e-53
216591011518	urocanate hydratase; Provisional; Region: PRK05414
216591011519	HMMPfam hit to PF01175, Urocanase, score 0
216591011520	PS01233 Urocanase active site.
216591011521	histidine utilization repressor, proteobacterial; Region: his_ut_repres; TIGR02018
216591011522	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591011523	DNA-binding site [nucleotide binding]; DNA binding site
216591011524	UTRA domain; Region: UTRA; pfam07702
216591011525	HMMPfam hit to PF07702, UTRA domain, score 3e-38
216591011526	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 2.3e-22
216591011527	Predicted helix-turn-helix motif with score 1354.000, SD 3.80 at aa 29-50, sequence PSENELAREFKVARMTVNRALR
216591011528	Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL); Region: PAL-HAL; cd00332
216591011529	active sites [active]
216591011530	tetramer interface [polypeptide binding]; other site
216591011531	HMMPfam hit to PF00221, Phenylalanine and histidine ammonia-lyase, score 2.2e-232
216591011532	PS00488 Phenylalanine and histidine ammonia-lyases signature.
216591011533	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591011534	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591011535	substrate binding pocket [chemical binding]; other site
216591011536	membrane-bound complex binding site; other site
216591011537	hinge residues; other site
216591011538	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 7.1e-50
216591011539	Phosphopantetheinyl transferase [Coenzyme metabolism]; Region: Sfp; COG2091
216591011540	4'-phosphopantetheinyl transferase superfamily; Region: ACPS; pfam01648
216591011541	HMMPfam hit to PF01648, 4'-phosphopantetheinyl transferase superfami, score 1e-12
216591011542	Predicted alpha/beta hydrolase [General function prediction only]; Region: COG4757
216591011543	putative choline sulfate-utilization transcription factor; Region: chol_sulf_TF; TIGR03418
216591011544	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591011545	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591011546	dimerization interface [polypeptide binding]; other site
216591011547	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.8e-16
216591011548	Predicted helix-turn-helix motif with score 1860.000, SD 5.52 at aa 24-45, sequence MSITLAAQDLCVTQSAVSRQIH
216591011549	PS00044 Bacterial regulatory proteins, lysR family signature.
216591011550	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.7e-27
216591011551	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591011552	putative substrate translocation pore; other site
216591011553	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591011554	12 probable transmembrane helices predicted for BCAL2251 by TMHMM2.0 at aa 12-34, 49-71, 78-100, 104-126, 139-161, 166-188, 220-242, 257-279, 284-306, 311-333, 340-362 and 372-394
216591011555	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7e-43
216591011556	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011557	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011558	Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]; Region: PhrB; COG0415
216591011559	DNA photolyase; Region: DNA_photolyase; pfam00875
216591011560	HMMPfam hit to PF03441, FAD binding domain of DNA photolyase, score 6.5e-121
216591011561	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011562	PS00691 DNA photolyases class 1 signature 2.
216591011563	HMMPfam hit to PF00875, DNA photolyase, score 2.1e-42
216591011564	Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins; Region: SRPBCC_4; cd07822
216591011565	putative hydrophobic ligand binding site [chemical binding]; other site
216591011566	SnoaL-like domain; Region: SnoaL_4; pfam13577
216591011567	short chain dehydrogenase; Provisional; Region: PRK07890
216591011568	classical (c) SDRs; Region: SDR_c; cd05233
216591011569	NAD(P) binding site [chemical binding]; other site
216591011570	active site
216591011571	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.8e-15
216591011572	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591011573	PS00215 Mitochondrial energy transfer proteins signature.
216591011574	sulfate adenylyltransferase, small subunit; Region: CysD; TIGR02039
216591011575	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
216591011576	Active Sites [active]
216591011577	HMMPfam hit to PF01507, Phosphoadenosine phosphosulfate reductase, score 2.4e-135
216591011578	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional; Region: PRK05506
216591011579	CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex; Region: CysN_ATPS; cd04166
216591011580	CysD dimerization site [polypeptide binding]; other site
216591011581	G1 box; other site
216591011582	putative GEF interaction site [polypeptide binding]; other site
216591011583	GTP/Mg2+ binding site [chemical binding]; other site
216591011584	Switch I region; other site
216591011585	G2 box; other site
216591011586	G3 box; other site
216591011587	Switch II region; other site
216591011588	G4 box; other site
216591011589	G5 box; other site
216591011590	CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN...; Region: CysN_NodQ_II; cd03695
216591011591	TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN...; Region: CysN_NoDQ_III; cd04095
216591011592	Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form...; Region: APSK; cd02027
216591011593	ligand-binding site [chemical binding]; other site
216591011594	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 2.2e-70
216591011595	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011596	PS00301 GTP-binding elongation factors signature.
216591011597	HMMPfam hit to PF03144, Elongation factor Tu domain, score 5.4e-08
216591011598	HMMPfam hit to PF01583, Adenylylsulphate kinase, score 3.1e-109
216591011599	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011600	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591011601	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591011602	DNA binding residues [nucleotide binding]
216591011603	dimerization interface [polypeptide binding]; other site
216591011604	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 0.00032
216591011605	Predicted helix-turn-helix motif with score 1457.000, SD 4.15 at aa 371-392, sequence LTLDEAAAATGITKNTARAHLR
216591011606	D-galactonate transporter; Region: 2A0114; TIGR00893
216591011607	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591011608	putative substrate translocation pore; other site
216591011609	12 probable transmembrane helices predicted for BCAL2262 by TMHMM2.0 at aa 21-38, 53-75, 88-110, 115-137, 150-172, 182-204, 251-273, 288-310, 319-336, 341-363, 372-394 and 404-426
216591011610	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.9e-48
216591011611	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011612	Lactonase, 7-bladed beta-propeller; Region: Lactonase; pfam10282
216591011613	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591011614	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591011615	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591011616	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.4e-09
216591011617	PS00041 Bacterial regulatory proteins, araC family signature.
216591011618	Predicted helix-turn-helix motif with score 1223.000, SD 3.35 at aa 264-285, sequence PSVDDVARELHVSARTLKRKLA
216591011619	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011620	Fatty acid desaturase; Region: FA_desaturase; pfam00487
216591011621	4 probable transmembrane helices predicted for BCAL2265 by TMHMM2.0 at aa 20-40, 45-64, 79-96 and 196-218
216591011622	haloacid dehalogenase-like hydrolase; Region: HAD; cl17202
216591011623	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
216591011624	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 0.0002
216591011625	Tellurium resistance protein; Region: Tellurium_res; pfam10138
216591011626	Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]; Region: TerZ; COG2310
216591011627	Uncharacterized proteins involved in stress response, similar to tellurium resistance terD; Region: TerD_like; cd06974
216591011628	putative metal binding site [ion binding]; other site
216591011629	HMMPfam hit to PF02342, Bacterial stress protein, score 1e-33
216591011630	PS00761 Signal peptidases I signature 3.
216591011631	hypothetical protein; Provisional; Region: PRK14013
216591011632	HMMPfam hit to PF04332, Protein of unknown function (DUF475), score 3.3e-103
216591011633	8 probable transmembrane helices predicted for BCAL2269 by TMHMM2.0 at aa 7-29, 64-86, 99-121, 146-168, 175-194, 231-253, 274-291 and 295-317
216591011634	Toxic anion resistance protein (TelA); Region: TelA; pfam05816
216591011635	HMMPfam hit to PF05816, Toxic anion resistance protein (TelA), score 2.4e-27
216591011636	Uncharacterized conserved protein [Function unknown]; Region: COG4104
216591011637	HMMPfam hit to PF05488, PAAR motif, score 2.9e-08
216591011638	HMMPfam hit to PF05488, PAAR motif, score 4.4e-06
216591011639	Uncharacterized conserved protein [Function unknown]; Region: COG4104
216591011640	HMMPfam hit to PF05488, PAAR motif, score 2.9e-08
216591011641	HMMPfam hit to PF05488, PAAR motif, score 4.4e-06
216591011642	2 probable transmembrane helices predicted for BCAL2276 by TMHMM2.0 at aa 12-34 and 49-71
216591011643	Protein of unknown function (DUF3274); Region: DUF3274; pfam11678
216591011644	PS00092 N-6 Adenine-specific DNA methylases signature.
216591011645	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011646	conserved hypothetical protein (pseudogene);CDS is disrupted by an IS element insertion after codon 908. May not affect protein function. Similar to Burkholderia pseudomallei hypothetical protein UniProt:Q63L00 (EMBL:BX571966) (925 aa) fasta scores: E()=4.6e-190, 54.693% id in 927 aa
216591011647	Transposase, Mutator family; Region: Transposase_mut; pfam00872
216591011648	MULE transposase domain; Region: MULE; pfam10551
216591011649	HMMPfam hit to PF00872, Transposase, Mutator family, score 2.8e-204
216591011650	PS01007 Transposases, Mutator family, signature.
216591011651	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 2.3e-21
216591011652	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591011653	HMMPfam hit to PF01810, LysE type translocator, score 1.3e-25
216591011654	6 probable transmembrane helices predicted for BCAL2280 by TMHMM2.0 at aa 6-28, 41-63, 78-100, 113-135, 150-172 and 185-204
216591011655	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
216591011656	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591011657	N-terminal plug; other site
216591011658	ligand-binding site [chemical binding]; other site
216591011659	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011660	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 8.1e-21
216591011661	HMMPfam hit to PF00593, TonB dependent receptor, score 1.4e-18
216591011662	PS01156 TonB-dependent receptor proteins signature 2.
216591011663	Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain; Region: SLC5sbd_u4; cd11480
216591011664	probable sodium:solute symporter, VC_2705 subfamily; Region: Na_symport_lg; TIGR03648
216591011665	14 probable transmembrane helices predicted for BCAL2282 by TMHMM2.0 at aa 7-24, 34-56, 77-99, 104-126, 146-168, 178-200, 213-235, 366-388, 400-422, 493-515, 536-554, 564-586, 593-615 and 630-652
216591011666	HMMPfam hit to PF00474, Sodium:solute symporter family, score 3.2e-12
216591011667	Domain of unknown function (DUF4212); Region: DUF4212; pfam13937
216591011668	2 probable transmembrane helices predicted for BCAL2283 by TMHMM2.0 at aa 34-56 and 71-93
216591011669	acetyl-CoA synthetase; Provisional; Region: PRK00174
216591011670	Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); Region: ACS; cd05966
216591011671	active site
216591011672	CoA binding site [chemical binding]; other site
216591011673	acyl-activating enzyme (AAE) consensus motif; other site
216591011674	AMP binding site [chemical binding]; other site
216591011675	acetate binding site [chemical binding]; other site
216591011676	HMMPfam hit to PF00501, AMP-binding enzyme, score 2.7e-135
216591011677	PS00455 Putative AMP-binding domain signature.
216591011678	EamA-like transporter family; Region: EamA; pfam00892
216591011679	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
216591011680	EamA-like transporter family; Region: EamA; pfam00892
216591011681	10 probable transmembrane helices predicted for BCAL2285 by TMHMM2.0 at aa 5-27, 31-50, 63-85, 90-112, 119-137, 152-174, 187-209, 219-238, 245-267 and 272-294
216591011682	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2.1e-20
216591011683	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.6e-19
216591011684	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011685	hypothetical protein; Provisional; Region: PRK05208
216591011686	HMMPfam hit to PF03350, Uncharacterized protein family, UPF0114, score 3.2e-55
216591011687	3 probable transmembrane helices predicted for BCAL2286 by TMHMM2.0 at aa 26-48, 68-90 and 147-169
216591011688	Fumarate hydratase (Fumerase); Region: Fumerase; pfam05681
216591011689	Fumarase C-terminus; Region: Fumerase_C; pfam05683
216591011690	HMMPfam hit to PF05681, Fumarate hydratase (Fumerase), score 2.6e-155
216591011691	HMMPfam hit to PF05683, Fumarase C-terminus, score 2.7e-119
216591011692	Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]; Region: Bfr; COG2193
216591011693	Bacterioferritin, ferritin-like diiron-binding domain; Region: Bacterioferritin; cd00907
216591011694	heme binding site [chemical binding]; other site
216591011695	ferroxidase pore; other site
216591011696	ferroxidase diiron center [ion binding]; other site
216591011697	PS00549 Bacterioferritin signature.
216591011698	HMMPfam hit to PF00210, Ferritin-like domain, score 2.2e-48
216591011699	glutamate racemase; Provisional; Region: PRK00865
216591011700	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase, score 5.4e-83
216591011701	PS00923 Aspartate and glutamate racemases signature 1.
216591011702	Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]; Region: Bfd; COG2906
216591011703	HMMPfam hit to PF04324, BFD-like [2Fe-2S] binding domain, score 1.7e-14
216591011704	Gram-negative bacterial tonB protein; Region: TonB; pfam03544
216591011705	Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]; Region: TonB; COG0810
216591011706	1 probable transmembrane helix predicted for BCAL2291 by TMHMM2.0 at aa 21-43
216591011707	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
216591011708	3 probable transmembrane helices predicted for BCAL2292 by TMHMM2.0 at aa 15-37, 131-153 and 178-200
216591011709	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 2.2e-41
216591011710	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
216591011711	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
216591011712	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 1.4e-21
216591011713	1 probable transmembrane helix predicted for BCAL2293 by TMHMM2.0 at aa 15-37
216591011714	LysR family transcriptional regulator; Provisional; Region: PRK14997
216591011715	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591011716	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_4; cd08473
216591011717	putative effector binding pocket; other site
216591011718	putative dimerization interface [polypeptide binding]; other site
216591011719	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.8e-44
216591011720	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.3e-15
216591011721	Predicted helix-turn-helix motif with score 1203.000, SD 3.28 at aa 21-42, sequence GGFSAAERVLGISKSRLSRRLT
216591011722	Pirin-related protein [General function prediction only]; Region: COG1741
216591011723	Pirin; Region: Pirin; pfam02678
216591011724	Pirin C-terminal cupin domain; Region: Pirin_C; pfam05726
216591011725	HMMPfam hit to PF02678, Pirin, score 6.7e-53
216591011726	HMMPfam hit to PF05726, Pirin C-terminal cupin domain, score 2.8e-43
216591011727	DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily; Region: SRPBCC_DUF1857; cd08863
216591011728	putative hydrophobic ligand binding site [chemical binding]; other site
216591011729	Hemin uptake protein hemP; Region: hemP; pfam10636
216591011730	Polyferredoxin [Energy production and conversion]; Region: NapH; COG0348
216591011731	4Fe-4S binding domain; Region: Fer4_5; pfam12801
216591011732	9 probable transmembrane helices predicted for BCAL2298 by TMHMM2.0 at aa 25-47, 62-84, 113-135, 139-161, 269-291, 339-361, 374-396, 411-428 and 441-463
216591011733	Iron permease FTR1 family; Region: FTR1; cl00475
216591011734	HMMPfam hit to PF03239, Iron permease FTR1 family, score 4.5e-13
216591011735	7 probable transmembrane helices predicted for BCAL2299 by TMHMM2.0 at aa 4-26, 39-61, 71-93, 116-138, 153-175, 182-199 and 242-264
216591011736	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011737	Cupredoxin-like domain; Region: Cupredoxin_1; pfam13473
216591011738	PS00430 TonB-dependent receptor proteins signature 1.
216591011739	Fe2+ transport protein; Region: Iron_transport; pfam10634
216591011740	excinuclease ABC subunit B; Provisional; Region: PRK05298
216591011741	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591011742	ATP binding site [chemical binding]; other site
216591011743	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591011744	nucleotide binding region [chemical binding]; other site
216591011745	ATP-binding site [chemical binding]; other site
216591011746	Ultra-violet resistance protein B; Region: UvrB; pfam12344
216591011747	UvrB/uvrC motif; Region: UVR; pfam02151
216591011748	HMMPfam hit to PF02151, UvrB/uvrC motif, score 2.4e-09
216591011749	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 5.9e-19
216591011750	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011751	aromatic amino acid aminotransferase; Provisional; Region: PRK09257
216591011752	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591011753	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591011754	homodimer interface [polypeptide binding]; other site
216591011755	catalytic residue [active]
216591011756	HMMPfam hit to PF00155, Aminotransferase class I and II, score 2.2e-118
216591011757	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.
216591011758	3-hydroxybutyrate dehydrogenase; Provisional; Region: PRK13394
216591011759	classical (c) SDRs; Region: SDR_c; cd05233
216591011760	NAD(P) binding site [chemical binding]; other site
216591011761	active site
216591011762	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.9e-30
216591011763	PS00061 Short-chain dehydrogenases/reductases family signature.
216591011764	PS00017 ATP/GTP-binding site motif A (P-loop).
216591011765	voltage-dependent potassium channel beta subunit, animal; Region: Kv_beta; TIGR01293
216591011766	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591011767	active site
216591011768	catalytic tetrad [active]
216591011769	HMMPfam hit to PF00248, Aldo/keto reductase family, score 1.4e-74
216591011770	Protein involved in catabolism of external DNA [General function prediction only]; Region: ComJ; COG2961
216591011771	HMMPfam hit to PF04378, Protein of unknown function (DUF519), score 1.2e-98
216591011772	Protein of unknown function (DUF3563); Region: DUF3563; pfam12086
216591011773	Cu(I)-responsive transcriptional regulator; Region: CueR; TIGR02044
216591011774	Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators; Region: HTH_CueR; cd01108
216591011775	DNA binding residues [nucleotide binding]
216591011776	dimer interface [polypeptide binding]; other site
216591011777	copper binding site [ion binding]; other site
216591011778	HMMPfam hit to PF00376, MerR family regulatory protein, score 1.2e-12
216591011779	PS00552 Bacterial regulatory proteins, merR family signature.
216591011780	Predicted helix-turn-helix motif with score 1297.000, SD 3.60 at aa 1-22, sequence MNIGDASRESGVSAKMIRYYEQ
216591011781	Transposase; Region: HTH_Tnp_1; pfam01527
216591011782	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591011783	C-terminal region is highly similar to Burkholderia cepacia insertion element IS407 hypothetical 20.5 kDa protein SWALL:YI71_BURCE (SWALL:P24577) (183 aa) fasta scores: E(): 1.8e-71, 98.9% id in 183 aa. Full length CDS is highly similar to the C-terminal region of Burkholderia mallei TnpB SWALL:Q8GQT8 (EMBL:AF285636) (277 aa) fasta scores: E(): 5.4e-101, 98.41% id in 253 aa; CDS lacks appropriate translational start site. It is likely that this CDS encodes the C-terminal region of a larger protein encompassing the upstream CDS. A translational frameshift possibly occurs after residue 86 of the upstream overlapping CDS
216591011784	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591011785	Protein of unknown function (DUF2863); Region: DUF2863; pfam11062
216591011786	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591011787	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cl17736
216591011788	active site
216591011789	phosphorylation site [posttranslational modification]
216591011790	dimerization interface [polypeptide binding]; other site
216591011791	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591011792	DNA binding residues [nucleotide binding]
216591011793	HMMPfam hit to PF00072, Response regulator receiver domain, score 0.0015
216591011794	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 6.3e-15
216591011795	Predicted helix-turn-helix motif with score 1512.000, SD 4.34 at aa 173-194, sequence STNKMIARTLGISEGTVKIHLA
216591011796	Predicted membrane protein [Function unknown]; Region: COG3235
216591011797	6 probable transmembrane helices predicted for BCAL2315 by TMHMM2.0 at aa 7-29, 44-62, 75-97, 107-125, 146-168 and 183-205
216591011798	Predicted carboxypeptidase [Amino acid transport and metabolism]; Region: COG2866
216591011799	Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; uncharacterized bacterial subgroup; Region: M14_Nna1_like_1; cd06234
216591011800	putative active site [active]
216591011801	Zn binding site [ion binding]; other site
216591011802	HMMPfam hit to PF00246, Zinc carboxypeptidase, score 1.5e-56
216591011803	hypothetical protein; Validated; Region: PRK02101
216591011804	HMMPfam hit to PF03883, Protein of unknown function (DUF328), score 1.3e-144
216591011805	PIN domain; Region: PIN_3; pfam13470
216591011806	methionine aminotransferase; Validated; Region: PRK09082
216591011807	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591011808	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591011809	homodimer interface [polypeptide binding]; other site
216591011810	catalytic residue [active]
216591011811	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.1e-61
216591011812	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.0012
216591011813	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591011814	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591011815	Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of  glutathione (GSH) with a wide range of endogenous and xenobiotic...; Region: GST_N_family; cd00570
216591011816	C-terminal domain interface [polypeptide binding]; other site
216591011817	GSH binding site (G-site) [chemical binding]; other site
216591011818	dimer interface [polypeptide binding]; other site
216591011819	C-terminal, alpha helical domain of an unknown subfamily 9 of Glutathione S-transferases; Region: GST_C_9; cd10424
216591011820	putative N-terminal domain interface [polypeptide binding]; other site
216591011821	putative dimer interface [polypeptide binding]; other site
216591011822	putative substrate binding pocket (H-site) [chemical binding]; other site
216591011823	enoyl-CoA hydratase; Provisional; Region: PRK07511
216591011824	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591011825	substrate binding site [chemical binding]; other site
216591011826	oxyanion hole (OAH) forming residues; other site
216591011827	trimer interface [polypeptide binding]; other site
216591011828	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 5.2e-47
216591011829	PS00166 Enoyl-CoA hydratase/isomerase signature.
216591011830	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011831	GSH-dependent disulfide bond oxidoreductase; Provisional; Region: PRK13972
216591011832	GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources...; Region: GST_N_Ure2p_like; cd03048
216591011833	C-terminal domain interface [polypeptide binding]; other site
216591011834	GSH binding site (G-site) [chemical binding]; other site
216591011835	dimer interface [polypeptide binding]; other site
216591011836	C-terminal, alpha helical domain of Escherichia coli YfcG Glutathione S-transferases and related uncharacterized proteins; Region: GST_C_YfcG_like; cd10291
216591011837	N-terminal domain interface [polypeptide binding]; other site
216591011838	putative dimer interface [polypeptide binding]; other site
216591011839	active site
216591011840	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 9.6e-12
216591011841	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 3e-09
216591011842	NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.  Rhizobium and related species form nodules on the roots of their...; Region: NodN; cd03450
216591011843	putative active site [active]
216591011844	putative catalytic site [active]
216591011845	HMMPfam hit to PF01575, MaoC like domain, score 7.1e-28
216591011846	YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function.  YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase.   Other enzymes with this fold include the peroxisomal...; Region: YdeM; cd03454
216591011847	putative active site [active]
216591011848	putative catalytic site [active]
216591011849	HMMPfam hit to PF01575, MaoC like domain, score 2.3e-11
216591011850	pimeloyl-CoA dehydrogenase, small subunit; Region: pimD_small; TIGR03203
216591011851	Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771
216591011852	Acyl-CoA dehydrogenase; Region: ACAD; cd00567
216591011853	active site
216591011854	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 8.5e-17
216591011855	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 0.0019
216591011856	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 2.3e-06
216591011857	pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204
216591011858	Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Region: ACAD_fadE6_17_26; cd01152
216591011859	FAD binding site [chemical binding]; other site
216591011860	substrate binding site [chemical binding]; other site
216591011861	catalytic base [active]
216591011862	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 1.1e-23
216591011863	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 7.4e-27
216591011864	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal doma, score 3e-05
216591011865	Protein of unknown function (DUF1178); Region: DUF1178; pfam06676
216591011866	HMMPfam hit to PF06676, Protein of unknown function (DUF1178), score 1.4e-63
216591011867	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
216591011868	dimer interface [polypeptide binding]; other site
216591011869	ADP-ribose binding site [chemical binding]; other site
216591011870	active site
216591011871	nudix motif; other site
216591011872	metal binding site [ion binding]; metal-binding site
216591011873	HMMPfam hit to PF00293, NUDIX domain, score 4.6e-19
216591011874	PS00893 mutT domain signature.
216591011875	Protein of unknown function (DUF2818); Region: DUF2818; pfam10993
216591011876	3 probable transmembrane helices predicted for BCAL2330 by TMHMM2.0 at aa 4-26, 39-58 and 73-95
216591011877	NADH:ubiquinone oxidoreductase subunit N; Provisional; Region: PRK05777
216591011878	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
216591011879	14 probable transmembrane helices predicted for BCAL2331 by TMHMM2.0 at aa 4-23, 35-54, 69-91, 104-121, 125-147, 160-182, 202-224, 237-259, 269-291, 298-317, 332-354, 374-396, 411-433 and 457-479
216591011880	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011881	HMMPfam hit to PF00361, NADH-Ubiquinone/plastoquinone (complex I), score 2.3e-69
216591011882	NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846
216591011883	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
216591011884	14 probable transmembrane helices predicted for BCAL2332 by TMHMM2.0 at aa 4-26, 33-55, 86-108, 115-133, 137-159, 166-188, 203-221, 241-263, 273-295, 302-324, 329-351, 372-394, 404-426 and 447-469
216591011885	HMMPfam hit to PF00361, NADH-Ubiquinone/plastoquinone (complex I), score 5.1e-102
216591011886	NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590
216591011887	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662
216591011888	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
216591011889	16 probable transmembrane helices predicted for BCAL2333 by TMHMM2.0 at aa 10-32, 39-61, 81-103, 116-135, 140-162, 175-197, 212-234, 255-277, 287-309, 316-335, 340-362, 382-404, 424-446, 493-515, 558-580 and 659-681
216591011890	HMMPfam hit to PF00361, NADH-Ubiquinone/plastoquinone (complex, score 1.8e-103
216591011891	HMMPfam hit to PF00662, NADH-Ubiquinone oxidoreductase (complex, score 3.6e-28
216591011892	NADH:ubiquinone oxidoreductase subunit K; Validated; Region: PRK05715
216591011893	HMMPfam hit to PF00420, NADH-ubiquinone/plastoquinone oxidoreduct, score 1.6e-39
216591011894	3 probable transmembrane helices predicted for BCAL2334 by TMHMM2.0 at aa 5-24, 29-51 and 61-83
216591011895	NADH:ubiquinone oxidoreductase subunit J; Provisional; Region: PRK06638
216591011896	NADH dehydrogenase subunit J; Provisional; Region: PRK06433
216591011897	5 probable transmembrane helices predicted for BCAL2335 by TMHMM2.0 at aa 4-23, 30-49, 53-75, 88-110 and 145-167
216591011898	HMMPfam hit to PF00499, NADH-ubiquinone/plastoquinone oxidoreduct, score 1.1e-39
216591011899	NADH-quinone oxidoreductase, chain I; Region: NuoI; TIGR01971
216591011900	4Fe-4S binding domain; Region: Fer4; cl02805
216591011901	4Fe-4S binding domain; Region: Fer4; pfam00037
216591011902	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 5.9e-07
216591011903	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591011904	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 2e-05
216591011905	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591011906	NADH:ubiquinone oxidoreductase subunit H; Provisional; Region: PRK06076
216591011907	8 probable transmembrane helices predicted for BCAL2337 by TMHMM2.0 at aa 23-45, 89-111, 126-148, 168-190, 205-224, 255-277, 287-309 and 330-352
216591011908	HMMPfam hit to PF00146, NADH dehydrogenase, score 8.8e-151
216591011909	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011910	PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2.
216591011911	NADH dehydrogenase subunit G; Validated; Region: PRK09129
216591011912	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591011913	catalytic loop [active]
216591011914	iron binding site [ion binding]; other site
216591011915	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588
216591011916	MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as...; Region: MopB_NDH-1_NuoG2; cd02772
216591011917	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 7.7e-33
216591011918	PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3.
216591011919	PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2.
216591011920	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 4.7e-10
216591011921	NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]; Region: NuoF; COG1894
216591011922	SLBB domain; Region: SLBB; pfam10531
216591011923	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; smart00928
216591011924	PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2.
216591011925	HMMPfam hit to PF01512, Respiratory-chain NADH dehydrogenase, score 3.9e-138
216591011926	NADH dehydrogenase subunit E; Validated; Region: PRK07539
216591011927	TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes; Region: TRX_Fd_NuoE; cd03064
216591011928	putative dimer interface [polypeptide binding]; other site
216591011929	[2Fe-2S] cluster binding site [ion binding]; other site
216591011930	HMMPfam hit to PF01257, Respiratory-chain NADH dehydrogenase, score 1.7e-58
216591011931	NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]; Region: NuoD; COG0649
216591011932	NADH dehydrogenase subunit D; Validated; Region: PRK06075
216591011933	HMMPfam hit to PF00346, Respiratory-chain NADH dehydrogenase,, score 6.5e-156
216591011934	PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature.
216591011935	NADH dehydrogenase subunit C; Provisional; Region: PRK06074
216591011936	NADH (or F420H2) dehydrogenase, subunit C; Region: NuoC_fam; TIGR01961
216591011937	HMMPfam hit to PF00329, Respiratory-chain NADH dehydrogenase,, score 7.4e-43
216591011938	NADH dehydrogenase subunit B; Validated; Region: PRK06411
216591011939	HMMPfam hit to PF01058, NADH ubiquinone oxidoreductase, 20 Kd sub, score 1.2e-62
216591011940	PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature.
216591011941	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011942	NADH:ubiquinone oxidoreductase subunit A; Validated; Region: PRK06602
216591011943	HMMPfam hit to PF00507, NADH-ubiquinone/plastoquinone oxidoreduct, score 1.6e-46
216591011944	3 probable transmembrane helices predicted for BCAL2344 by TMHMM2.0 at aa 4-26, 61-83 and 88-110
216591011945	Preprotein translocase SecG subunit; Region: SecG; pfam03840
216591011946	HMMPfam hit to PF03840, Preprotein translocase SecG subunit, score 6.7e-29
216591011947	2 probable transmembrane helices predicted for BCAL2345 by TMHMM2.0 at aa 7-26 and 54-76
216591011948	triosephosphate isomerase; Provisional; Region: PRK14567
216591011949	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
216591011950	substrate binding site [chemical binding]; other site
216591011951	dimer interface [polypeptide binding]; other site
216591011952	catalytic triad [active]
216591011953	HMMPfam hit to PF00121, Triosephosphate isomerase, score 4.4e-126
216591011954	PS00171 Triosephosphate isomerase active site.
216591011955	putative NAD(P)H quinone oxidoreductase, PIG3 family; Region: quinone_pig3; TIGR02824
216591011956	PIG3 p53-inducible quinone oxidoreductase; Region: p53_inducible_oxidoreductase; cd05276
216591011957	NAD(P) binding site [chemical binding]; other site
216591011958	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 1.9e-35
216591011959	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 8.9e-13
216591011960	polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824
216591011961	Polyribonucleotide nucleotidyltransferase, repeat 1; Region: RNase_PH_PNPase_1; cd11363
216591011962	RNase E interface [polypeptide binding]; other site
216591011963	trimer interface [polypeptide binding]; other site
216591011964	Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726
216591011965	Polyribonucleotide nucleotidyltransferase, repeat 2; Region: RNase_PH_PNPase_2; cd11364
216591011966	RNase E interface [polypeptide binding]; other site
216591011967	trimer interface [polypeptide binding]; other site
216591011968	active site
216591011969	Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393
216591011970	putative nucleic acid binding region [nucleotide binding]; other site
216591011971	G-X-X-G motif; other site
216591011972	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
216591011973	RNA binding site [nucleotide binding]; other site
216591011974	domain interface; other site
216591011975	HMMPfam hit to PF00575, S1 RNA binding domain, score 1.3e-21
216591011976	HMMPfam hit to PF00013, KH domain, score 5.1e-18
216591011977	HMMPfam hit to PF03725, 3' exoribonuclease family, domain, score 6.8e-19
216591011978	HMMPfam hit to PF01138, 3' exoribonuclease family, domain, score 2.1e-52
216591011979	HMMPfam hit to PF03726, Polyribonucleotide nucleotidyltransferase,, score 4.7e-21
216591011980	HMMPfam hit to PF03725, 3' exoribonuclease family, domain, score 8.8e-15
216591011981	HMMPfam hit to PF01138, 3' exoribonuclease family, domain, score 5.7e-35
216591011982	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
216591011983	16S/18S rRNA binding site [nucleotide binding]; other site
216591011984	S13e-L30e interaction site [polypeptide binding]; other site
216591011985	25S rRNA binding site [nucleotide binding]; other site
216591011986	HMMPfam hit to PF00312, Ribosomal protein S15, score 6.2e-39
216591011987	PS00362 Ribosomal protein S15 signature.
216591011988	Periplasmic binding protein; Region: Peripla_BP_6; pfam13458
216591011989	Periplasmic solute-binding domain of active transport proteins; Region: PBP1_SBP_like_3; cd06329
216591011990	putative ligand binding site [chemical binding]; other site
216591011991	PS00211 ABC transporters family signature.
216591011992	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591011993	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeA; cd00883
216591011994	active site clefts [active]
216591011995	zinc binding site [ion binding]; other site
216591011996	dimer interface [polypeptide binding]; other site
216591011997	HMMPfam hit to PF00484, Carbonic anhydrase, score 5.5e-29
216591011998	PS00704 Prokaryotic-type carbonic anhydrases signature 1.
216591011999	PS00705 Prokaryotic-type carbonic anhydrases signature 2.
216591012000	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
216591012001	Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659
216591012002	Sulfate transporter family; Region: Sulfate_transp; pfam00916
216591012003	Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604
216591012004	10 probable transmembrane helices predicted for BCAL2353 by TMHMM2.0 at aa 15-34, 41-63, 78-97, 109-131, 151-173, 194-216, 252-274, 295-314, 329-360 and 381-403
216591012005	HMMPfam hit to PF00916, Sulfate transporter family, score 2e-27
216591012006	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012007	2-isopropylmalate synthase; Validated; Region: PRK00915
216591012008	2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; Region: DRE_TIM_IPMS; cd07940
216591012009	active site
216591012010	catalytic residues [active]
216591012011	metal binding site [ion binding]; metal-binding site
216591012012	LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; smart00917
216591012013	HMMPfam hit to PF08502, LeuA allosteric (dimerisation) domain, score 2.5e-52
216591012014	HMMPfam hit to PF00682, HMGL-like, score 3e-129
216591012015	PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2.
216591012016	PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1.
216591012017	Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183
216591012018	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; pfam01066
216591012019	6 probable transmembrane helices predicted for BCAL2355 by TMHMM2.0 at aa 48-70, 138-155, 168-187, 202-224, 231-248 and 253-272
216591012020	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 1e-20
216591012021	PS00379 CDP-alcohol phosphatidyltransferases signature.
216591012022	phosphatidylserine decarboxylase; Provisional; Region: PRK05305
216591012023	HMMPfam hit to PF02666, Phosphatidylserine decarboxylase, score 3.4e-40
216591012024	1 probable transmembrane helix predicted for BCAL2356 by TMHMM2.0 at aa 15-46
216591012025	ketol-acid reductoisomerase; Provisional; Region: PRK05479
216591012026	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvN; pfam07991
216591012027	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450
216591012028	HMMPfam hit to PF01450, Acetohydroxy acid isomeroreductase, catalyti, score 3e-85
216591012029	HMMPfam hit to PF07991, Acetohydroxy acid isomeroreductase, catalyti, score 3.2e-107
216591012030	acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895
216591012031	N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878
216591012032	putative valine binding site [chemical binding]; other site
216591012033	dimer interface [polypeptide binding]; other site
216591012034	Small subunit of acetolactate synthase; Region: ALS_ss_C; pfam10369
216591012035	HMMPfam hit to PF01842, ACT domain, score 2.6e-16
216591012036	PS00430 TonB-dependent receptor proteins signature 1.
216591012037	acetolactate synthase 3 catalytic subunit; Validated; Region: PRK06965
216591012038	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591012039	PYR/PP interface [polypeptide binding]; other site
216591012040	dimer interface [polypeptide binding]; other site
216591012041	TPP binding site [chemical binding]; other site
216591012042	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591012043	Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015
216591012044	TPP-binding site [chemical binding]; other site
216591012045	dimer interface [polypeptide binding]; other site
216591012046	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 7e-78
216591012047	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 4.6e-61
216591012048	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 3.7e-93
216591012049	PS00044 Bacterial regulatory proteins, lysR family signature.
216591012050	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591012051	RNA polymerase factor sigma-70; Validated; Region: PRK09047
216591012052	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591012053	DNA binding residues [nucleotide binding]
216591012054	HMMPfam hit to PF08281, Sigma-70, region, score 6.6e-16
216591012055	HMMPfam hit to PF04545, Sigma-70, region, score 9.4e-12
216591012056	Protein of unknown function (DUF3619); Region: DUF3619; pfam12279
216591012057	1 probable transmembrane helix predicted for BCAL2361 by TMHMM2.0 at aa 81-100
216591012058	Protein of unknown function (DUF3106); Region: DUF3106; pfam11304
216591012059	RDD family; Region: RDD; pfam06271
216591012060	HMMPfam hit to PF06271, RDD family, score 8.2e-27
216591012061	3 probable transmembrane helices predicted for BCAL2363 by TMHMM2.0 at aa 22-44, 51-73 and 119-141
216591012062	Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398
216591012063	putative active site [active]
216591012064	putative metal binding site [ion binding]; other site
216591012065	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 5.2e-07
216591012066	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591012067	This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can...; Region: GT1_like_2; cd03814
216591012068	HMMPfam hit to PF00534, Glycosyl transferases group, score 2.4e-16
216591012069	Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]; Region: DgkA; COG0818
216591012070	HMMPfam hit to PF01219, Prokaryotic diacylglycerol kinase, score 1.6e-33
216591012071	2 probable transmembrane helices predicted for BCAL2366 by TMHMM2.0 at aa 108-130 and 150-172
216591012072	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012073	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591012074	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591012075	Bacterial transcriptional repressor; Region: TetR; pfam13972
216591012076	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 4e-13
216591012077	Predicted helix-turn-helix motif with score 1665.000, SD 4.86 at aa 29-50, sequence VTTTTIAEEMEISPGNLYYHFR
216591012078	Possible lysine decarboxylase; Region: Lysine_decarbox; cl00695
216591012079	HMMPfam hit to PF03641, Possible lysine decarboxylase, score 6.3e-60
216591012080	glucose-1-dehydrogenase; Provisional; Region: PRK06947
216591012081	classical (c) SDRs; Region: SDR_c; cd05233
216591012082	NAD(P) binding site [chemical binding]; other site
216591012083	active site
216591012084	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.3e-26
216591012085	PS00061 Short-chain dehydrogenases/reductases family signature.
216591012086	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807
216591012087	Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT_2; cl17364
216591012088	13 probable transmembrane helices predicted for BCAL2370 by TMHMM2.0 at aa 56-78, 140-157, 169-188, 198-215, 228-250, 254-273, 280-302, 338-360, 369-391, 395-412, 425-447, 467-489 and 501-523
216591012089	Bacterial protein of unknown function (DUF924); Region: DUF924; pfam06041
216591012090	HMMPfam hit to PF06041, Bacterial protein of unknown function (DUF92, score 5.7e-82
216591012091	Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]; Region: COG2872
216591012092	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
216591012093	HMMPfam hit to PF07973, Threonyl and Alanyl tRNA synthetase second a, score 7.8e-14
216591012094	Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct...; Region: Trunc_globin; cd00454
216591012095	apolar tunnel; other site
216591012096	heme binding site [chemical binding]; other site
216591012097	dimerization interface [polypeptide binding]; other site
216591012098	HMMPfam hit to PF01152, Bacterial-like globin, score 2.6e-63
216591012099	Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3127
216591012100	HMMPfam hit to PF02687, Predicted permease, score 8.6e-20
216591012101	10 probable transmembrane helices predicted for BCAL2374 by TMHMM2.0 at aa 47-69, 297-319, 340-362, 390-412, 432-454, 458-480, 508-530, 745-767, 798-820 and 835-857
216591012102	HMMPfam hit to PF02687, Predicted permease, score 2.7e-09
216591012103	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591012104	Domain of unknown function (DUF4126); Region: DUF4126; pfam13548
216591012105	4 probable transmembrane helices predicted for BCAL2375 by TMHMM2.0 at aa 33-55, 70-92, 113-135 and 174-196
216591012106	multidrug efflux system protein; Provisional; Region: PRK11431
216591012107	4 probable transmembrane helices predicted for BCAL2376 by TMHMM2.0 at aa 2-19, 29-48, 55-77 and 82-104
216591012108	HMMPfam hit to PF00893, Small Multidrug Resistance protein, score 4.3e-35
216591012109	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591012110	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591012111	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591012112	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591012113	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591012114	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012115	Putative hemolysin [General function prediction only]; Region: Hlx; COG3042
216591012116	Domain of unknown function (DUF333); Region: DUF333; pfam03891
216591012117	HMMPfam hit to PF03891, Domain of unknown function (DUF333), score 3.7e-13
216591012118	DNA-binding transcriptional activator KdpE; Provisional; Region: PRK10529
216591012119	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591012120	active site
216591012121	phosphorylation site [posttranslational modification]
216591012122	intermolecular recognition site; other site
216591012123	dimerization interface [polypeptide binding]; other site
216591012124	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591012125	DNA binding site [nucleotide binding]
216591012126	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 7.6e-22
216591012127	HMMPfam hit to PF00072, Response regulator receiver domain, score 1e-37
216591012128	Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]; Region: KdpD; COG2205
216591012129	Osmosensitive K+ channel His kinase sensor domain; Region: KdpD; pfam02702
216591012130	USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium...; Region: USP_OKCHK; cd01987
216591012131	Ligand Binding Site [chemical binding]; other site
216591012132	Domain of unknown function (DUF4118); Region: DUF4118; pfam13493
216591012133	GAF domain; Region: GAF_3; pfam13492
216591012134	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591012135	dimer interface [polypeptide binding]; other site
216591012136	phosphorylation site [posttranslational modification]
216591012137	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591012138	ATP binding site [chemical binding]; other site
216591012139	Mg2+ binding site [ion binding]; other site
216591012140	G-X-G motif; other site
216591012141	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 3.1e-29
216591012142	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.9e-18
216591012143	4 probable transmembrane helices predicted for BCAL2380 by TMHMM2.0 at aa 410-429, 434-453, 457-479 and 486-508
216591012144	HMMPfam hit to PF00582, Universal stress protein family, score 2.4e-13
216591012145	HMMPfam hit to PF02702, Osmosensitive K+ channel His kinase sensor, score 2.5e-151
216591012146	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012147	potassium-transporting ATPase subunit C; Reviewed; Region: PRK00315
216591012148	HMMPfam hit to PF02669, K+-transporting ATPase, c chain, score 8.1e-82
216591012149	1 probable transmembrane helix predicted for BCAL2381 by TMHMM2.0 at aa 7-29
216591012150	potassium-transporting ATPase subunit B; Provisional; Region: PRK01122
216591012151	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
216591012152	7 probable transmembrane helices predicted for BCAL2382 by TMHMM2.0 at aa 35-57, 62-84, 223-245, 260-282, 589-611, 626-648 and 667-689
216591012153	PS00018 EF-hand calcium-binding domain.
216591012154	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 4.1e-33
216591012155	PS00154 E1-E2 ATPases phosphorylation site.
216591012156	HMMPfam hit to PF00122, E1-E2 ATPase, score 1e-55
216591012157	potassium-transporting ATPase subunit A; Provisional; Region: PRK05482
216591012158	HMMPfam hit to PF03814, Potassium-transporting ATPase A subunit, score 0
216591012159	10 probable transmembrane helices predicted for BCAL2383 by TMHMM2.0 at aa 10-29, 65-84, 133-155, 176-198, 285-307, 312-329, 412-434, 455-477, 522-544 and 565-587
216591012160	PS00107 Protein kinases ATP-binding region signature.
216591012161	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012162	quinone oxidoreductase, NADPH-dependent; Provisional; Region: PRK10754
216591012163	Quinone oxidoreductase (QOR); Region: QOR2; cd05286
216591012164	NADP binding site [chemical binding]; other site
216591012165	dimer interface [polypeptide binding]; other site
216591012166	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.6e-39
216591012167	PS01162 Quinone oxidoreductase / zeta-crystallin signature.
216591012168	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 2.1e-22
216591012169	methylglyoxal synthase; Validated; Region: mgsA; PRK05234
216591012170	substrate binding site [chemical binding]; other site
216591012171	HMMPfam hit to PF02142, MGS-like domain, score 4e-24
216591012172	PS01335 Methylglyoxal synthase active site.
216591012173	short chain dehydrogenase; Provisional; Region: PRK08339
216591012174	putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; Region: BKR_like_SDR_like; cd05344
216591012175	putative NAD(P) binding site [chemical binding]; other site
216591012176	putative active site [active]
216591012177	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.3e-15
216591012178	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012179	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591012180	active site
216591012181	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 1.1e-06
216591012182	hypothetical protein; Validated; Region: PRK00110
216591012183	HMMPfam hit to PF01709, Domain of unknown function DUF28, score 2.5e-152
216591012184	phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885
216591012185	Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844
216591012186	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Region: GARS_A; pfam01071
216591012187	Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843
216591012188	HMMPfam hit to PF02844, Phosphoribosylglycinamide synthetase, N doma, score 1.1e-55
216591012189	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, ATP-gr, score 6.5e-120
216591012190	HMMPfam hit to PF02843, Phosphoribosylglycinamide synthetase, C doma, score 5e-49
216591012191	coproporphyrinogen III oxidase; Provisional; Region: PRK05330
216591012192	Coproporphyrinogen III oxidase; Region: Coprogen_oxidas; pfam01218
216591012193	HMMPfam hit to PF01218, Coproporphyrinogen III oxidase, score 4.4e-172
216591012194	PS01021 Coproporphyrinogen III oxidase signature.
216591012195	Nicotinamide/nicotinate mononucleotide adenylyltransferase; Region: NMNAT; cd02165
216591012196	nicotinic acid mononucleotide adenylyltransferase; Provisional; Region: nadD; PRK00071
216591012197	active site
216591012198	(T/H)XGH motif; other site
216591012199	HMMPfam hit to PF01467, Cytidylyltransferase, score 4.3e-36
216591012200	iojap-like ribosome-associated protein; Region: iojap_ybeB; TIGR00090
216591012201	HMMPfam hit to PF02410, Domain of unknown function DUF143, score 9.8e-34
216591012202	rRNA large subunit methyltransferase; Provisional; Region: PRK00103
216591012203	HMMPfam hit to PF02590, Uncharacterized ACR, COG1576, score 3.3e-80
216591012204	Maf-like protein; Region: Maf; pfam02545
216591012205	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
216591012206	active site
216591012207	dimer interface [polypeptide binding]; other site
216591012208	HMMPfam hit to PF02545, Maf-like protein, score 1.3e-45
216591012209	ribonuclease G; Provisional; Region: PRK11712
216591012210	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
216591012211	homodimer interface [polypeptide binding]; other site
216591012212	oligonucleotide binding site [chemical binding]; other site
216591012213	HMMPfam hit to PF00575, S1 RNA binding domain, score 7.9e-08
216591012214	Protein with unknown function (DUF469); Region: DUF469; pfam04320
216591012215	HMMPfam hit to PF04320, Protein with unknown function (DUF469), score 9.4e-24
216591012216	1 probable transmembrane helix predicted for BCAL2397 by TMHMM2.0 at aa 13-35
216591012217	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012218	PRC-barrel domain; Region: PRC; pfam05239
216591012219	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012220	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591012221	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591012222	putative substrate translocation pore; other site
216591012223	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.6e-30
216591012224	12 probable transmembrane helices predicted for BCAL2399 by TMHMM2.0 at aa 20-37, 47-69, 81-103, 107-129, 142-164, 168-185, 220-242, 252-274, 287-309, 319-338, 345-367 and 372-394
216591012225	5 probable transmembrane helices predicted for BCAL2400 by TMHMM2.0 at aa 30-52, 59-76, 86-103, 110-132 and 152-174
216591012226	PS00099 Thiolases active site.
216591012227	Domain of unknown function (DUF3315); Region: DUF3315; pfam11776
216591012228	1 probable transmembrane helix predicted for BCAL2401 by TMHMM2.0 at aa 21-38
216591012229	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
216591012230	UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; Region: Beta4Glucosyltransferase; cd02511
216591012231	putative metal binding site; other site
216591012232	HMMPfam hit to PF00535, Glycosyl transferase family, score 1.5e-16
216591012233	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591012234	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
216591012235	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
216591012236	putative active site [active]
216591012237	HMMPfam hit to PF01075, Glycosyltransferase family, score 2.4e-09
216591012238	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591012239	This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core; Region: GT1_WabH_like; cd03811
216591012240	putative ADP-binding pocket [chemical binding]; other site
216591012241	HMMPfam hit to PF00534, Glycosyl transferases group, score 1.4e-35
216591012242	9 probable transmembrane helices predicted for BCAL2405 by TMHMM2.0 at aa 15-37, 48-70, 85-102, 109-128, 143-165, 172-194, 209-231, 340-359 and 386-405
216591012243	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012244	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
216591012245	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
216591012246	putative active site [active]
216591012247	HMMPfam hit to PF01075, Glycosyltransferase family, score 1.1e-08
216591012248	Glycosyltransferase Family 4; Region: Glyco_transf_4; pfam13439
216591012249	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
216591012250	HMMPfam hit to PF00534, Glycosyl transferases group, score 3.3e-06
216591012251	lipid A export permease/ATP-binding protein MsbA; Region: MsbA_lipidA; TIGR02203
216591012252	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
216591012253	ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; Region: ABCC_MsbA; cd03251
216591012254	Walker A/P-loop; other site
216591012255	ATP binding site [chemical binding]; other site
216591012256	Q-loop/lid; other site
216591012257	ABC transporter signature motif; other site
216591012258	Walker B; other site
216591012259	D-loop; other site
216591012260	H-loop/switch region; other site
216591012261	HMMPfam hit to PF00005, ABC transporter, score 3.8e-68
216591012262	PS00211 ABC transporters family signature.
216591012263	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012264	6 probable transmembrane helices predicted for BCAL2408 by TMHMM2.0 at aa 33-55, 70-92, 135-157, 172-194, 259-281 and 291-313
216591012265	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 7.4e-43
216591012266	DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673
216591012267	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1; Region: PHP_PolIIIA_DnaE1; cd07433
216591012268	putative active site [active]
216591012269	putative PHP Thumb interface [polypeptide binding]; other site
216591012270	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
216591012271	generic binding surface II; other site
216591012272	generic binding surface I; other site
216591012273	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 3.4e-09
216591012274	HMMPfam hit to PF07733, Bacterial DNA polymerase III alpha sub, score 0
216591012275	HMMPfam hit to PF02811, PHP domain, score 6.1e-40
216591012276	rhodanese superfamily protein; Provisional; Region: PRK05320
216591012277	Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins; Region: RHOD_YceA; cd01518
216591012278	active site residue [active]
216591012279	HMMPfam hit to PF00581, Rhodanese-like domain, score 2.3e-07
216591012280	Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]; Region: GlnS; COG0008
216591012281	glutamyl-queuosine tRNA(Asp) synthetase; Region: queuosine_YadB; TIGR03838
216591012282	active site
216591012283	HIGH motif; other site
216591012284	nucleotide binding site [chemical binding]; other site
216591012285	active site
216591012286	KMSKS motif; other site
216591012287	HMMPfam hit to PF00749, tRNA synthetases class I (E and Q), cata, score 3.7e-18
216591012288	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
216591012289	DEAD-like helicases superfamily; Region: DEXDc; smart00487
216591012290	ATP binding site [chemical binding]; other site
216591012291	Mg++ binding site [ion binding]; other site
216591012292	motif III; other site
216591012293	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591012294	nucleotide binding region [chemical binding]; other site
216591012295	ATP-binding site [chemical binding]; other site
216591012296	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 8.3e-33
216591012297	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 8.8e-69
216591012298	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
216591012299	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012300	Predicted periplasmic protein [General function prediction only]; Region: COG3895
216591012301	Membrane-bound lysozyme-inhibitor of c-type lysozyme; Region: MliC; pfam09864
216591012302	1 probable transmembrane helix predicted for BCAL2414 by TMHMM2.0 at aa 7-29
216591012303	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012304	phosphoribosylglycinamide formyltransferase 2; Validated; Region: purT; PRK09288
216591012305	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591012306	ATP-grasp domain; Region: ATP-grasp; pfam02222
216591012307	HMMPfam hit to PF02222, ATP-grasp domain, score 7.1e-85
216591012308	META domain; Region: META; pfam03724
216591012309	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012310	HMMPfam hit to PF03724, Domain of unknown function (306), score 1.5e-13
216591012311	Domain of unknown function (DUF4117); Region: DUF4117; pfam13491
216591012312	FtsK/SpoIIIE family; Region: FtsK_SpoIIIE; pfam01580
216591012313	Ftsk gamma domain; Region: Ftsk_gamma; pfam09397
216591012314	3 probable transmembrane helices predicted for BCAL2417 by TMHMM2.0 at aa 5-24, 39-61 and 74-96
216591012315	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012316	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591012317	HMMPfam hit to PF01580, FtsK/SpoIIIE family, score 1.4e-90
216591012318	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012319	Lactonase, 7-bladed beta-propeller; Region: Lactonase; pfam10282
216591012320	Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]; Region: SGA1; COG3387
216591012321	Glycosyl hydrolases family 15; Region: Glyco_hydro_15; pfam00723
216591012322	HMMPfam hit to PF00723, Glycosyl hydrolases family, score 8.1e-125
216591012323	Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]; Region: DepA; COG4553
216591012324	PHB de-polymerase C-terminus; Region: PHB_depo_C; pfam06850
216591012325	HMMPfam hit to PF06850, PHB de-polymerase C-terminus, score 1.1e-138
216591012326	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591012327	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591012328	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591012329	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591012330	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591012331	putative transposase OrfB; Reviewed; Region: PHA02517
216591012332	HTH-like domain; Region: HTH_21; pfam13276
216591012333	Integrase core domain; Region: rve; pfam00665
216591012334	Integrase core domain; Region: rve_2; pfam13333
216591012335	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591012336	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591012337	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591012338	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.8e-14
216591012339	ferredoxin; Provisional; Region: PRK06991
216591012340	Putative Fe-S cluster; Region: FeS; pfam04060
216591012341	4Fe-4S binding domain; Region: Fer4; pfam00037
216591012342	HMMPfam hit to PF04060, Putative Fe-S cluster, score 1.6e-16
216591012343	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 2.3e-08
216591012344	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591012345	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0001
216591012346	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591012347	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591012348	Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177
216591012349	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
216591012350	minor groove reading motif; other site
216591012351	helix-hairpin-helix signature motif; other site
216591012352	substrate binding pocket [chemical binding]; other site
216591012353	active site
216591012354	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 1.5e-18
216591012355	HMMPfam hit to PF00633, Helix-hairpin-helix motif, score 5.7e-07
216591012356	PS01155 Endonuclease III family signature.
216591012357	EamA-like transporter family; Region: EamA; pfam00892
216591012358	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
216591012359	EamA-like transporter family; Region: EamA; pfam00892
216591012360	10 probable transmembrane helices predicted for BCAL2426 by TMHMM2.0 at aa 13-35, 39-61, 74-96, 101-123, 132-149, 154-173, 186-208, 218-240, 252-274 and 279-298
216591012361	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 8.5e-21
216591012362	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.1e-18
216591012363	Domain of unknown function (DUF1841); Region: DUF1841; pfam08897
216591012364	Cytochrome c553 [Energy production and conversion]; Region: COG2863
216591012365	HMMPfam hit to PF00034, Cytochrome c, score 0.0038
216591012366	PS00190 Cytochrome c family heme-binding site signature.
216591012367	Cytochrome c553 [Energy production and conversion]; Region: COG2863
216591012368	HMMPfam hit to PF00034, Cytochrome c, score 0.00021
216591012369	PS00190 Cytochrome c family heme-binding site signature.
216591012370	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
216591012371	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591012372	Walker A motif; other site
216591012373	ATP binding site [chemical binding]; other site
216591012374	Walker B motif; other site
216591012375	arginine finger; other site
216591012376	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 2.8e-06
216591012377	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 5.5e-10
216591012378	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012379	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3825
216591012380	HMMPfam hit to PF05762, VWA domain containing CoxE-like protein, score 0.0022
216591012381	Benzoate membrane transport protein; Region: BenE; pfam03594
216591012382	benzoate transporter; Region: benE; TIGR00843
216591012383	HMMPfam hit to PF03594, Benzoate membrane transport protein, score 1.2e-222
216591012384	11 probable transmembrane helices predicted for BCAL2432 by TMHMM2.0 at aa 21-43, 58-77, 84-103, 108-128, 135-153, 158-176, 183-205, 215-237, 306-328, 333-355 and 375-397
216591012385	HMMPfam hit to PF00860, Permease family, score 0.0011
216591012386	Predicted helix-turn-helix motif with score 999.000, SD 2.59 at aa 42-63, sequence VLMFQAGRAAHLTDAQISSWIW
216591012387	transaldolase-like protein; Provisional; Region: PTZ00411
216591012388	Transaldolases including both TalA and TalB; Region: Transaldolase_TalAB; cd00957
216591012389	active site
216591012390	dimer interface [polypeptide binding]; other site
216591012391	catalytic residue [active]
216591012392	HMMPfam hit to PF00923, Transaldolase, score 1.6e-147
216591012393	PS01054 Transaldolase signature 1.
216591012394	PS00958 Transaldolase active site.
216591012395	Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates; Region: PhnB_like; cd06588
216591012396	dimer interface [polypeptide binding]; other site
216591012397	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591012398	HMMPfam hit to PF06983, 3-demethylubiquinone-9 3-methyltransfera, score 8.6e-07
216591012399	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/, score 4.9e-08
216591012400	Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]; Region: PutP; COG0591
216591012401	Na binding site [ion binding]; other site
216591012402	13 probable transmembrane helices predicted for BCAL2435 by TMHMM2.0 at aa 4-26, 47-69, 79-101, 122-144, 159-181, 194-216, 236-258, 279-301, 331-353, 383-405, 409-431, 436-458 and 473-495
216591012403	HMMPfam hit to PF00474, Sodium:solute symporter family, score 1.9e-05
216591012404	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591012405	Protein of unknown function (DUF3311); Region: DUF3311; pfam11755
216591012406	2 probable transmembrane helices predicted for BCAL2436 by TMHMM2.0 at aa 54-71 and 81-103
216591012407	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
216591012408	2 probable transmembrane helices predicted for BCAL2438 by TMHMM2.0 at aa 20-42 and 52-71
216591012409	Protein of unknown function (DUF2029); Region: DUF2029; pfam09594
216591012410	10 probable transmembrane helices predicted for BCAL2439 by TMHMM2.0 at aa 21-43, 117-139, 152-174, 189-211, 218-240, 250-269, 281-303, 318-340, 361-378 and 383-402
216591012411	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012412	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591012413	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012414	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012415	MUG-like Uracil-DNA glycosylase enzyme family; Region: UDG_MUG_like; cd10032
216591012416	putative active site [active]
216591012417	Chorismate lyase; Region: Chor_lyase; cl01230
216591012418	HMMPfam hit to PF04345, Chorismate lyase, score 6.8e-08
216591012419	heat shock protein 90; Provisional; Region: PRK05218
216591012420	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591012421	ATP binding site [chemical binding]; other site
216591012422	Mg2+ binding site [ion binding]; other site
216591012423	G-X-G motif; other site
216591012424	HMMPfam hit to PF00183, Hsp90 protein, score 1.3e-103
216591012425	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 5.3e-09
216591012426	PS00298 Heat shock hsp90 proteins family signature.
216591012427	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591012428	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591012429	DNA-binding site [nucleotide binding]; DNA binding site
216591012430	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591012431	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591012432	homodimer interface [polypeptide binding]; other site
216591012433	catalytic residue [active]
216591012434	HMMPfam hit to PF00155, Aminotransferase class I and II, score 6.7e-11
216591012435	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 1.9e-14
216591012436	Glyoxalase-like domain; Region: Glyoxalase_3; pfam13468
216591012437	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
216591012438	EamA-like transporter family; Region: EamA; pfam00892
216591012439	10 probable transmembrane helices predicted for BCAL2445 by TMHMM2.0 at aa 7-29, 39-56, 69-89, 94-116, 123-140, 144-166, 179-201, 216-238, 251-269 and 273-292
216591012440	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 7.8e-12
216591012441	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2.5e-10
216591012442	Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]; Region: COG0436
216591012443	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591012444	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591012445	homodimer interface [polypeptide binding]; other site
216591012446	catalytic residue [active]
216591012447	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.9e-13
216591012448	This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_1; cd02199
216591012449	homotrimer interaction site [polypeptide binding]; other site
216591012450	putative active site [active]
216591012451	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 1.4e-17
216591012452	Predicted epimerase, PhzC/PhzF homolog [General function prediction only]; Region: COG0384
216591012453	hydroxyproline-2-epimerase; Provisional; Region: PRK13971
216591012454	HMMPfam hit to PF02567, Phenazine biosynthesis-like protein, score 2.3e-61
216591012455	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591012456	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591012457	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591012458	metal binding site [ion binding]; metal-binding site
216591012459	active site
216591012460	I-site; other site
216591012461	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591012462	2 probable transmembrane helices predicted for BCAL2449 by TMHMM2.0 at aa 37-59 and 310-332
216591012463	HMMPfam hit to PF00990, GGDEF domain, score 3.2e-45
216591012464	HMMPfam hit to PF00563, EAL domain, score 2.3e-112
216591012465	Chromate transporter; Region: Chromate_transp; pfam02417
216591012466	chromate transporter, chromate ion transporter (CHR) family; Region: 2A51; TIGR00937
216591012467	Chromate transporter; Region: Chromate_transp; pfam02417
216591012468	8 probable transmembrane helices predicted for BCAL2450 by TMHMM2.0 at aa 15-37, 89-111, 121-143, 164-186, 206-225, 232-254, 297-319 and 382-401
216591012469	HMMPfam hit to PF02417, Chromate transporter, score 1.7e-06
216591012470	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012471	Bacterial Transmembrane Pair family; Region: BTP; pfam05232
216591012472	Bacterial Transmembrane Pair family; Region: BTP; pfam05232
216591012473	HMMPfam hit to PF05232, Bacterial Transmembrane Pair family, score 1.1e-30
216591012474	4 probable transmembrane helices predicted for BCAL2451 by TMHMM2.0 at aa 16-38, 48-67, 87-109 and 113-135
216591012475	HMMPfam hit to PF05232, Bacterial Transmembrane Pair family, score 4e-27
216591012476	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591012477	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591012478	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591012479	dimerization interface [polypeptide binding]; other site
216591012480	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.3e-17
216591012481	Predicted helix-turn-helix motif with score 1575.000, SD 4.55 at aa 18-39, sequence GSFTAAARKLGKRQSTVSEAIA
216591012482	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.9e-15
216591012483	Copper resistance protein D; Region: CopD; cl00563
216591012484	4 probable transmembrane helices predicted for BCAL2453 by TMHMM2.0 at aa 4-26, 52-74, 84-106 and 127-149
216591012485	DNA topoisomerase IV subunit A; Validated; Region: PRK05561
216591012486	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
216591012487	CAP-like domain; other site
216591012488	active site
216591012489	primary dimer interface [polypeptide binding]; other site
216591012490	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
216591012491	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 0.00062
216591012492	HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV, subunit A, score 2.9e-234
216591012493	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591012494	DNA topoisomerase IV subunit B; Reviewed; Region: PRK05559
216591012495	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591012496	ATP binding site [chemical binding]; other site
216591012497	Mg2+ binding site [ion binding]; other site
216591012498	G-X-G motif; other site
216591012499	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
216591012500	anchoring element; other site
216591012501	dimer interface [polypeptide binding]; other site
216591012502	ATP binding site [chemical binding]; other site
216591012503	Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from...; Region: TOPRIM; cl00718
216591012504	active site
216591012505	metal binding site [ion binding]; metal-binding site
216591012506	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
216591012507	HMMPfam hit to PF00986, DNA gyrase B subunit, carboxyl terminus, score 2e-18
216591012508	PS00177 DNA topoisomerase II signature.
216591012509	HMMPfam hit to PF00204, DNA gyrase B, score 3.4e-28
216591012510	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and H, score 3e-21
216591012511	ABC transporter ATPase component; Reviewed; Region: PRK11147
216591012512	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591012513	Walker A/P-loop; other site
216591012514	ATP binding site [chemical binding]; other site
216591012515	Q-loop/lid; other site
216591012516	ABC transporter signature motif; other site
216591012517	Walker B; other site
216591012518	D-loop; other site
216591012519	H-loop/switch region; other site
216591012520	ABC transporter; Region: ABC_tran_2; pfam12848
216591012521	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
216591012522	HMMPfam hit to PF00005, ABC transporter, score 2.4e-44
216591012523	PS00211 ABC transporters family signature.
216591012524	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012525	HMMPfam hit to PF00005, ABC transporter, score 3.6e-52
216591012526	PS00211 ABC transporters family signature.
216591012527	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012528	Domain of unknown function (DUF4399); Region: DUF4399; pfam14347
216591012529	Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are...; Region: rubredoxin; cd00730
216591012530	Rubredoxin; Region: Rubredoxin; pfam00301
216591012531	iron binding site [ion binding]; other site
216591012532	HMMPfam hit to PF00301, Rubredoxin, score 9.6e-28
216591012533	PS00202 Rubredoxin signature.
216591012534	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591012535	S-adenosylmethionine binding site [chemical binding]; other site
216591012536	HMMPfam hit to PF01596, O-methyltransferase, score 8.6e-06
216591012537	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
216591012538	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 7.1e-06
216591012539	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591012540	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.00062
216591012541	2 probable transmembrane helices predicted for BCAL2461 by TMHMM2.0 at aa 11-33 and 43-62
216591012542	RNA polymerase sigma factor, sigma-70 family; Region: sigma70-ECF; TIGR02937
216591012543	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591012544	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591012545	DNA binding residues [nucleotide binding]
216591012546	HMMPfam hit to PF04545, Sigma-70, region, score 4.1e-06
216591012547	HMMPfam hit to PF08281, Sigma-70, region, score 1.2e-09
216591012548	HMMPfam hit to PF04542, Sigma-70 region, score 1.3e-10
216591012549	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
216591012550	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591012551	NAD(P) binding site [chemical binding]; other site
216591012552	active site
216591012553	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0016
216591012554	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.1e-31
216591012555	PS00216 Sugar transport proteins signature 1.
216591012556	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591012557	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591012558	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 9.2e-11
216591012559	ecotin; Provisional; Region: PRK03719
216591012560	secondary substrate binding site; other site
216591012561	primary substrate binding site; other site
216591012562	inhibition loop; other site
216591012563	dimerization interface [polypeptide binding]; other site
216591012564	HMMPfam hit to PF03974, Ecotin, score 4e-57
216591012565	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012566	2 probable transmembrane helices predicted for BCAL2468 by TMHMM2.0 at aa 19-41 and 51-73
216591012567	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591012568	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591012569	putative substrate translocation pore; other site
216591012570	13 probable transmembrane helices predicted for BCAL2470 by TMHMM2.0 at aa 31-53, 68-90, 97-119, 123-145, 158-180, 185-207, 219-236, 246-263, 283-305, 320-342, 349-371, 415-437 and 444-466
216591012571	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7e-57
216591012572	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012573	Predicted ATPase [General function prediction only]; Region: COG3911
216591012574	AAA domain; Region: AAA_28; pfam13521
216591012575	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012576	Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a...; Region: GT1_TPS; cd03788
216591012577	alpha,alpha-trehalose-phosphate synthase [UDP-forming]; Region: trehalose_OtsA; TIGR02400
216591012578	active site
216591012579	homotetramer interface [polypeptide binding]; other site
216591012580	HMMPfam hit to PF00982, Glycosyltransferase family, score 4.1e-175
216591012581	2 probable transmembrane helices predicted for BCAL2473 by TMHMM2.0 at aa 29-51 and 66-88
216591012582	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012583	2 probable transmembrane helices predicted for BCAL2474 by TMHMM2.0 at aa 7-29 and 33-55
216591012584	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012585	BcenGI8
216591012586	Bacterial conjugation TrbI-like protein; Region: TrbI; cl04242
216591012587	1 probable transmembrane helix predicted for BCAL2475 by TMHMM2.0 at aa 12-29
216591012588	PAAR motif; Region: PAAR_motif; pfam05488
216591012589	HMMPfam hit to PF05488, PAAR motif, score 4.8e-05
216591012590	HMMPfam hit to PF05488, PAAR motif, score 3.6e-05
216591012591	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012592	PS00018 EF-hand calcium-binding domain.
216591012593	lysozyme_like domain.  This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases; Region: lysozyme_like; cl00222
216591012594	catalytic residue [active]
216591012595	Probable gene remnant. Similar to an internal region of Burkholderia vietnamiensis G4 hypothetical protein precursor UniProt:Q4BJ74 (EMBL:AAEH02000017) (932 aa) fasta scores: E()=5.9e-46, 48.052% id in 308 aa
216591012596	PS00018 EF-hand calcium-binding domain.
216591012597	Probable gene remnant. Similar to the N-terminal region of Bordetella bronchiseptica putative integrase UniProt:Q7WQ32 (EMBL:BX640438) (121 aa) fasta scores: E()=2.4e-15, 89.796% id in 49 aa
216591012598	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
216591012599	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
216591012600	DNA-binding interface [nucleotide binding]; DNA binding site
216591012601	Integrase core domain; Region: rve; pfam00665
216591012602	HMMPfam hit to PF02796, Helix-turn-helix domain of resolvase, score 0.0028
216591012603	Predicted helix-turn-helix motif with score 2020.000, SD 6.07 at aa 18-39, sequence VSEREIARRLGISRNTVARYLS
216591012604	HMMPfam hit to PF00665, Integrase core domain, score 2.7e-25
216591012605	transposase/IS protein; Provisional; Region: PRK09183
216591012606	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591012607	Walker A motif; other site
216591012608	ATP binding site [chemical binding]; other site
216591012609	Walker B motif; other site
216591012610	HMMPfam hit to PF01695, IstB-like ATP binding protein, score 9.6e-88
216591012611	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012612	HMMPfam hit to PF00580, UvrD/REP helicase, score 4.3e-08
216591012613	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591012614	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
216591012615	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
216591012616	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
216591012617	HMMPfam hit to PF01609, Transposase DDE domain, score 3.6e-32
216591012618	Protein of unknown function (DUF1427); Region: DUF1427; pfam07235
216591012619	HMMPfam hit to PF07235, Protein of unknown function (DUF1427), score 7.1e-34
216591012620	2 probable transmembrane helices predicted for BCAL2481 by TMHMM2.0 at aa 5-22 and 27-49
216591012621	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591012622	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591012623	trimer interface [polypeptide binding]; other site
216591012624	eyelet of channel; other site
216591012625	HMMPfam hit to PF00267, Gram-negative porin, score 0.0047
216591012626	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591012627	HMMPfam hit to PF05976, Bacterial membrane protein of unknown functi, score 0.0069
216591012628	8 probable transmembrane helices predicted for BCAL2483 by TMHMM2.0 at aa 20-42, 91-113, 120-142, 146-168, 438-460, 464-483, 485-507 and 512-534
216591012629	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012630	Uncharacterized ACR, YkgG family COG1556; Region: DUF162; pfam02589
216591012631	Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]; Region: COG1139
216591012632	Uncharacterized ACR, YkgG family COG1556; Region: DUF162; pfam02589
216591012633	Domain of unknown function (DUF3390); Region: DUF3390; pfam11870
216591012634	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0013
216591012635	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591012636	Cysteine-rich domain; Region: CCG; pfam02754
216591012637	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
216591012638	Cysteine-rich domain; Region: CCG; pfam02754
216591012639	HMMPfam hit to PF02754, Cysteine-rich domain, score 3.6e-13
216591012640	HMMPfam hit to PF02754, Cysteine-rich domain, score 6.1e-11
216591012641	D-lactate dehydrogenase; Provisional; Region: PRK11183
216591012642	FAD binding domain; Region: FAD_binding_4; pfam01565
216591012643	D-lactate dehydrogenase, membrane binding; Region: Lact-deh-memb; pfam09330
216591012644	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591012645	HMMPfam hit to PF01565, FAD binding domain, score 2.1e-05
216591012646	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591012647	DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986
216591012648	The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold; Region: PBP2_BudR; cd08451
216591012649	putative dimerization interface [polypeptide binding]; other site
216591012650	putative substrate binding pocket [chemical binding]; other site
216591012651	HMMPfam hit to PF03466, LysR substrate binding domain, score 7e-43
216591012652	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.7e-21
216591012653	PS00044 Bacterial regulatory proteins, lysR family signature.
216591012654	Predicted helix-turn-helix motif with score 1303.000, SD 3.62 at aa 16-37, sequence LHFTEAAEFLGIAQPPLSQQIL
216591012655	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084
216591012656	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 7.5e-24
216591012657	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591012658	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591012659	LysR substrate binding domain; Region: LysR_substrate; pfam03466
216591012660	dimerization interface [polypeptide binding]; other site
216591012661	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix protei, score 1.2e-16
216591012662	Predicted helix-turn-helix motif with score 1297.000, SD 3.60 at aa 16-37, sequence GTLGGAARALALSHPTIGRRLR
216591012663	PS00044 Bacterial regulatory proteins, lysR family signature.
216591012664	Peptidase propeptide and YPEB domain; Region: PepSY; pfam03413
216591012665	1 probable transmembrane helix predicted for BCAL2491 by TMHMM2.0 at aa 7-24
216591012666	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
216591012667	PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from...; Region: PAP2_BcrC_like; cd03385
216591012668	active site
216591012669	5 probable transmembrane helices predicted for BCAL2492 by TMHMM2.0 at aa 20-42, 55-77, 100-117, 124-141 and 151-173
216591012670	HMMPfam hit to PF01569, PAP2 superfamily, score 6.5e-16
216591012671	Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]; Region: COG4705
216591012672	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591012673	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591012674	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591012675	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591012676	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 2.3e-15
216591012677	6 probable transmembrane helices predicted for BCAL2493 by TMHMM2.0 at aa 76-95, 100-122, 142-161, 165-187, 194-216 and 226-248
216591012678	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 5.2e-17
216591012679	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 3e-05
216591012680	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 2e-13
216591012681	1 probable transmembrane helix predicted for BCAL2494 by TMHMM2.0 at aa 4-26
216591012682	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012683	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591012684	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591012685	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591012686	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 9.4e-08
216591012687	6 probable transmembrane helices predicted for BCAL2495 by TMHMM2.0 at aa 43-62, 72-89, 96-118, 163-185, 192-211 and 221-243
216591012688	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 3.4e-11
216591012689	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 0.00024
216591012690	Interrupted by insertion sequence after codon 22. When complete, transposase proposed to express due to -1 translational frameshift at the sequence 5'-AAAAAC-3'
216591012691	HMMPfam hit to PF01609, Transposase DDE domain, score 3.6e-32
216591012692	Transposase, Mutator family; Region: Transposase_mut; pfam00872
216591012693	MULE transposase domain; Region: MULE; pfam10551
216591012694	HMMPfam hit to PF00872, Transposase, Mutator family, score 2.8e-204
216591012695	PS01007 Transposases, Mutator family, signature.
216591012696	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Region: HATPase_c_3; pfam13589
216591012697	Domain of unknown function (DUF4150); Region: DUF4150; pfam13665
216591012698	Uncharacterized protein conserved in bacteria (DUF2169); Region: DUF2169; pfam09937
216591012699	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591012700	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591012701	Gp5 C-terminal repeat (3 copies); Region: Gp5_C; pfam06715
216591012702	HMMPfam hit to PF06715, Gp5 C-terminal repeat (3 copies), score 0.01
216591012703	HMMPfam hit to PF06715, Gp5 C-terminal repeat (3 copies), score 0.0075
216591012704	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 3.2e-52
216591012705	Protein of unknown function (DUF3592); Region: DUF3592; pfam12158
216591012706	2 probable transmembrane helices predicted for BCAL2505 by TMHMM2.0 at aa 5-22 and 100-122
216591012707	metal ion transporter CorA-like divalent cation transporter superfamily; Region: MIT_CorA-like; cl00459
216591012708	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012709	phage/plasmid-like protein TIGR03299; Region: LGT_TIGR03299
216591012710	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012711	YqaJ-like viral recombinase domain; Region: YqaJ; cl09232
216591012712	3 probable transmembrane helices predicted for BCAL2512 by TMHMM2.0 at aa 5-27, 37-56 and 68-90
216591012713	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012714	Methyltransferase domain; Region: Methyltransf_27; pfam13708
216591012715	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591012716	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591012717	non-specific DNA binding site [nucleotide binding]; other site
216591012718	salt bridge; other site
216591012719	sequence-specific DNA binding site [nucleotide binding]; other site
216591012720	HMMPfam hit to PF01381, Helix-turn-helix, score 2.9e-12
216591012721	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591012722	HMMPfam hit to PF01757, Acyltransferase family, score 1.9e-64
216591012723	10 probable transmembrane helices predicted for BCAL2519 by TMHMM2.0 at aa 45-67, 88-107, 146-168, 175-194, 209-228, 235-252, 257-276, 285-307, 322-344 and 357-376
216591012724	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012725	Probable gene remnant. CDS lacks appropriate translational start site. Similar to the C-terminal region of Azoarcus sp. (strain EbN1) hypothetical protein UniProt:Q5P5E4 (EMBL:CR555306) (962 aa) fasta scores: E()=0, 90.154% id in 650 aa
216591012726	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012727	Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: DsbG; COG1651
216591012728	DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a...; Region: DsbA_family; cd02972
216591012729	catalytic residues [active]
216591012730	1 probable transmembrane helix predicted for BCAL2522 by TMHMM2.0 at aa 21-43
216591012731	HMMPfam hit to PF01323, DSBA-like thioredoxin domain, score 2.3e-05
216591012732	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012733	DNA-binding transcriptional regulator CynR; Provisional; Region: PRK11242
216591012734	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591012735	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591012736	dimerization interface [polypeptide binding]; other site
216591012737	substrate binding pocket [chemical binding]; other site
216591012738	HMMPfam hit to PF03466, LysR substrate binding domain, score 2e-35
216591012739	Predicted helix-turn-helix motif with score 1598.000, SD 4.63 at aa 90-111, sequence RGLLRIALSDGISPSHLSNLLA
216591012740	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1e-22
216591012741	PS00044 Bacterial regulatory proteins, lysR family signature.
216591012742	Predicted helix-turn-helix motif with score 1598.000, SD 4.63 at aa 16-37, sequence LSFTRAAERLHIEQSPLSRSIR
216591012743	Domain of unknown function (DUF3817); Region: DUF3817; pfam12823
216591012744	3 probable transmembrane helices predicted for BCAL2523A by TMHMM2.0 at aa 29-51, 61-83 and 90-109
216591012745	transcriptional activator FtrA; Provisional; Region: ftrA; PRK09393
216591012746	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591012747	conserved cys residue [active]
216591012748	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591012749	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591012750	HMMPfam hit to PF01965, DJ-1/PfpI family, score 4.1e-10
216591012751	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 2.1e-08
216591012752	Predicted helix-turn-helix motif with score 1142.000, SD 3.08 at aa 229-250, sequence LTLKDMAGRAAMSSRTLNRRFQ
216591012753	PS00041 Bacterial regulatory proteins, araC family signature.
216591012754	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 5.5e-10
216591012755	Predicted helix-turn-helix motif with score 986.000, SD 3.08 at aa 294-315, sequence SLREHFGRIVGVSPTAYRKSFN
216591012756	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591012757	putative substrate translocation pore; other site
216591012758	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.3e-42
216591012759	11 probable transmembrane helices predicted for BCAL2525 by TMHMM2.0 at aa 22-44, 59-81, 93-115, 120-142, 149-171, 175-194, 225-247, 257-279, 286-305, 315-334 and 346-368
216591012760	Probable gene remnant. Similar to the C-terminal region of Azotobacter sp. FA8 hypothetical protein UniProt:Q8KRE7 (EMBL:ASP496234) (299 aa) fasta scores: E()=1.3e-15, 67.188% id in 64 aa
216591012761	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
216591012762	Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily; Region: HTH_MerR-like_sg3; cd01282
216591012763	DNA binding residues [nucleotide binding]
216591012764	putative dimer interface [polypeptide binding]; other site
216591012765	HMMPfam hit to PF00376, MerR family regulatory protein, score 6.8e-10
216591012766	Predicted helix-turn-helix motif with score 1431.000, SD 4.06 at aa 1-22, sequence MTIGELAHKTGASRRSIRHYDD
216591012767	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591012768	Uncharacterized protein family (UPF0227); Region: UPF0227; cl14886
216591012769	1 probable transmembrane helix predicted for BCAL2527 by TMHMM2.0 at aa 7-29
216591012770	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 9e-18
216591012771	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591012772	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3e-12
216591012773	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591012774	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591012775	The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold; Region: PBP2_Nitroaromatics_like; cd08417
216591012776	substrate binding pocket [chemical binding]; other site
216591012777	dimerization interface [polypeptide binding]; other site
216591012778	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.4e-10
216591012779	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.5e-15
216591012780	PS00044 Bacterial regulatory proteins, lysR family signature.
216591012781	Predicted helix-turn-helix motif with score 1013.000, SD 2.64 at aa 19-40, sequence ANVTRAARRLAISQPALSAQLA
216591012782	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591012783	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 0.0027
216591012784	Protein of unknown function (DUF3423); Region: DUF3423; pfam11903
216591012785	HMMPfam hit to PF00557, metallopeptidase family M24, score 9.1e-78
216591012786	Transposase; Region: HTH_Tnp_1; pfam01527
216591012787	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591012788	CDS lacks appropriate translational start site. It is likely that this CDS encodes the C-terminal region of a larger protein encompassing the upstream CDS. A translational frameshift possibly occurs after residue 86 of the upstream overlapping CDS
216591012789	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591012790	Probable gene remnant. Similar to an internal region of Escherichia coli transposase UniProt:Q3ZTZ8 (EMBL:AY258503 (342 aa) fasta scores: E()=7.9e-13, 50.649% id in 77 aa
216591012791	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591012792	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591012793	PGAP1-like protein; Region: PGAP1; pfam07819
216591012794	HMMPfam hit to PF00975, Thioesterase domain, score 0.00012
216591012795	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 2.6e-25
216591012796	transcriptional regulator; Provisional; Region: PRK10632
216591012797	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591012798	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591012799	putative effector binding pocket; other site
216591012800	dimerization interface [polypeptide binding]; other site
216591012801	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.4e-13
216591012802	Predicted helix-turn-helix motif with score 1186.000, SD 3.23 at aa 17-38, sequence GSLVSAARRFGLSPSMAGKHVS
216591012803	PS00044 Bacterial regulatory proteins, lysR family signature.
216591012804	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.9e-53
216591012805	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591012806	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591012807	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 1.4e-16
216591012808	Predicted helix-turn-helix motif with score 1549.000, SD 4.46 at aa 29-50, sequence LSVRRLAEEVGVKPASLYHHFP
216591012809	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591012810	GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing...; Region: GST_N_GTT2_like; cd03051
216591012811	putative C-terminal domain interface [polypeptide binding]; other site
216591012812	putative GSH binding site (G-site) [chemical binding]; other site
216591012813	putative dimer interface [polypeptide binding]; other site
216591012814	C-terminal, alpha helical domain of GTT2-like Glutathione S-transferases; Region: GST_C_GTT2_like; cd03182
216591012815	putative N-terminal domain interface [polypeptide binding]; other site
216591012816	putative dimer interface [polypeptide binding]; other site
216591012817	putative substrate binding pocket (H-site) [chemical binding]; other site
216591012818	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 1.4e-07
216591012819	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 8.9e-14
216591012820	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591012821	transcriptional activator TtdR; Provisional; Region: PRK09801
216591012822	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479
216591012823	putative effector binding pocket; other site
216591012824	putative dimerization interface [polypeptide binding]; other site
216591012825	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.2e-46
216591012826	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2e-21
216591012827	PS00044 Bacterial regulatory proteins, lysR family signature.
216591012828	Predicted helix-turn-helix motif with score 1946.000, SD 5.81 at aa 17-38, sequence RSLAAAARELGVTPPAVSKRLA
216591012829	alpha/beta hydrolase fold; Region: Abhydrolase_1; pfam00561
216591012830	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1e-19
216591012831	3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; Region: IPMI; cd01583
216591012832	3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402
216591012833	substrate binding site [chemical binding]; other site
216591012834	ligand binding site [chemical binding]; other site
216591012835	HMMPfam hit to PF00330, Aconitase family (aconitate hydratase), score 5e-194
216591012836	PS00450 Aconitase family signature 1.
216591012837	PS01244 Aconitase family signature 2.
216591012838	isopropylmalate isomerase small subunit; Provisional; Region: leuD; PRK01641
216591012839	Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate...; Region: IPMI_Swivel; cd01577
216591012840	substrate binding site [chemical binding]; other site
216591012841	HMMPfam hit to PF00694, Aconitase C-terminal domain, score 8.5e-38
216591012842	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591012843	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591012844	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.2e-13
216591012845	Predicted helix-turn-helix motif with score 1311.000, SD 3.65 at aa 40-61, sequence TSITDLTRAMRLAQGSLYKAFK
216591012846	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012847	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591012848	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012849	12 probable transmembrane helices predicted for BCAL2545 by TMHMM2.0 at aa 13-35, 50-72, 79-98, 103-125, 138-160, 165-187, 219-241, 251-273, 280-299, 303-325, 345-367 and 371-390
216591012850	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.2e-32
216591012851	Probable gene remnant. Similar to the N-terminal region of Bordetella parapertussis CsaA protein secretion chaperone UniProt:Q7W9Y8 (EMBL:BX640427) (112 aa) fasta scores: E()=2.7e-12, 55.172% id in 87 aa. CDS contains a frameshift after codon 66
216591012852	Probable gene remnant. Similar to an internal region of Burkholderia pseudomallei (Pseudomonas pseudomallei) MAP2 methionine aminopeptidase UniProt:Q63SV9 (EMBL:BX571965) (272 aa) fasta scores: E()=7.6e-06, 58.696% id in 46 aa
216591012853	Protein of unknown function (DUF1525); Region: DUF1525; pfam07511
216591012854	Probable gene remnant. CDS lacks appropriate translational start site. Similar to the C-terminal region of Azoarcus sp. (strain EbN1) hypothetical protein UniProt:Q5P571 (EMBL:CR555306) (314 aa) fasta scores: E()=7.7e-48, 70.764% id in 301 aa
216591012855	HMMPfam hit to PF07513, Protein of unknown function (DUF1527), score 8.3e-164
216591012856	integrating conjugative element protein, PFL_4711 family; Region: conj_TIGR03755
216591012857	3 probable transmembrane helices predicted for BCAL2551 by TMHMM2.0 at aa 16-38, 58-75 and 96-115
216591012858	TraG-like protein, N-terminal region; Region: TraG_N; pfam07916
216591012859	5 probable transmembrane helices predicted for BCAL2552 by TMHMM2.0 at aa 20-42, 71-88, 360-382, 389-411 and 451-473
216591012860	PS00211 ABC transporters family signature.
216591012861	1 probable transmembrane helix predicted for BCAL2553 by TMHMM2.0 at aa 56-78
216591012862	PIN domain; Region: PIN_3; cl17397
216591012863	Antidote-toxin recognition MazE; Region: Antitoxin-MazE; cl00877
216591012864	integrating conjugative element relaxase, PFL_4751 family; Region: ICE_TraI_Pfluor; TIGR03760
216591012865	Putative helicase; Region: TraI_2; pfam07514
216591012866	Protein of unknown function (DUF1528); Region: DUF1528; pfam07515
216591012867	HMMPfam hit to PF07514, Putative helicase, score 2.3e-182
216591012868	HMMPfam hit to PF07515, Protein of unknown function (DUF1528), score 1e-81
216591012869	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
216591012870	Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; cl17730
216591012871	Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492
216591012872	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591012873	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 6.2e-10
216591012874	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 0.0024
216591012875	Rrf2 family protein; Region: rrf2_super; TIGR00738
216591012876	Transcriptional regulator; Region: Rrf2; pfam02082
216591012877	HMMPfam hit to PF02082, Transcriptional regulator, score 5.1e-33
216591012878	HMMPfam hit to PF08279, HTH domain, score 0.0002
216591012879	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591012880	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591012881	non-specific DNA binding site [nucleotide binding]; other site
216591012882	salt bridge; other site
216591012883	sequence-specific DNA binding site [nucleotide binding]; other site
216591012884	HMMPfam hit to PF01381, Helix-turn-helix, score 8e-13
216591012885	Predicted helix-turn-helix motif with score 1134.000, SD 3.05 at aa 33-54, sequence LAQEVLAEQAGIARSHMGKIER
216591012886	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591012887	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591012888	dimerization interface [polypeptide binding]; other site
216591012889	substrate binding pocket [chemical binding]; other site
216591012890	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.2e-25
216591012891	Probable gene remnant. CDS is truncated by the insertion of the upstream IS element. Similar to the C-terminal region of Azoarcus sp. (strain EbN1) integrase Int UniProt:Q5P5J0 (EMBL:CR555306) (641 aa) fasta scores: E()=2.6e-34, 62.500% id in 152 aa
216591012892	DNA replication protein [DNA replication, recombination, and repair]; Region: DnaC; COG1484
216591012893	IstB-like ATP binding N-terminal; Region: IstB_IS21_ATP; pfam08483
216591012894	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591012895	Walker A motif; other site
216591012896	ATP binding site [chemical binding]; other site
216591012897	Walker B motif; other site
216591012898	arginine finger; other site
216591012899	HMMPfam hit to PF01695, IstB-like ATP binding protein, score 1e-109
216591012900	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012901	HMMPfam hit to PF08483, IstB-like ATP binding N-terminal, score 3.4e-14
216591012902	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cl17257
216591012903	DNA binding residues [nucleotide binding]
216591012904	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
216591012905	Integrase core domain; Region: rve; pfam00665
216591012906	Integrase core domain; Region: rve_3; cl15866
216591012907	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
216591012908	HMMPfam hit to PF00665, Integrase core domain, score 1.6e-28
216591012909	Predicted helix-turn-helix motif with score 1142.000, SD 3.08 at aa 23-44, sequence LTHRQISRAIGISVGAVSKFAA
216591012910	UPF0489 domain; Region: UPF0489; pfam12640
216591012911	UPF0489 domain; Region: UPF0489; pfam12640
216591012912	PS00024 Hemopexin domain signature.
216591012913	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012914	Similar to the C-terminus of Chromobacterium violaceum protein UmuC SWALL:Q7NUT5 (EMBL:AE016919) (301 aa) fasta scores: E(): 5.5e-12, 40.33% id in 119 aa
216591012915	Cupin; Region: Cupin_6; pfam12852
216591012916	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591012917	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591012918	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3e-08
216591012919	Uncharacterized conserved protein [Function unknown]; Region: COG2128
216591012920	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
216591012921	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 8e-08
216591012922	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591012923	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591012924	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591012925	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591012926	Walker A/P-loop; other site
216591012927	ATP binding site [chemical binding]; other site
216591012928	Q-loop/lid; other site
216591012929	ABC transporter signature motif; other site
216591012930	Walker B; other site
216591012931	D-loop; other site
216591012932	H-loop/switch region; other site
216591012933	HMMPfam hit to PF00005, ABC transporter, score 3e-62
216591012934	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012935	PS00211 ABC transporters family signature.
216591012936	CDS contains a nonsense mutation (amber) after codon 197. Similar to Pseudomonas aeruginosa hypothetical protein UniProt:Q9I1F0 (EMBL:AE004659) (399 aa) fasta scores: E()=1.8e-108, 69.873% id in 395 aa
216591012937	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591012938	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591012939	dimer interface [polypeptide binding]; other site
216591012940	conserved gate region; other site
216591012941	putative PBP binding loops; other site
216591012942	ABC-ATPase subunit interface; other site
216591012943	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.5e-18
216591012944	5 probable transmembrane helices predicted for BCAL2576 by TMHMM2.0 at aa 59-81, 113-135, 156-175, 179-201 and 208-230
216591012945	Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Region: GATase1_PfpI_2; cd03139
216591012946	conserved cys residue [active]
216591012947	HMMPfam hit to PF01965, DJ-1/PfpI family, score 1.8e-05
216591012948	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591012949	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591012950	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 5.4e-20
216591012951	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591012952	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591012953	putative effector binding pocket; other site
216591012954	dimerization interface [polypeptide binding]; other site
216591012955	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-11
216591012956	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.6e-48
216591012957	Similar to Burkholderia pseudomallei (Pseudomonas pseudomallei) putative transposase protein UniProt:Q63YU9 (EMBL:BX571965) (276 aa) fasta scores: E()=1.7e-105, 98.545% id in 275 aa. Frameshift after codon 155 caused by 2bp insertion.
216591012958	HMMPfam hit to PF00665, Integrase core domain, score 1.6e-41
216591012959	Transposase; Region: HTH_Tnp_1; pfam01527
216591012960	HMMPfam hit to PF01527, Transposase, score 9.7e-30
216591012961	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
216591012962	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 2e-18
216591012963	Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases); Region: nitrilases_CHs; cd07564
216591012964	Predicted amidohydrolase [General function prediction only]; Region: COG0388
216591012965	putative active site [active]
216591012966	catalytic triad [active]
216591012967	putative dimer interface [polypeptide binding]; other site
216591012968	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, score 9.6e-68
216591012969	PS00920 Nitrilases / cyanide hydratase signature 1.
216591012970	PS00921 Nitrilases / cyanide hydratase active site signature.
216591012971	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591012972	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591012973	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 4.4e-09
216591012974	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 9e-07
216591012975	Predicted helix-turn-helix motif with score 1779.000, SD 5.25 at aa 230-251, sequence LDIARIAQTLGMSVSSLYRAFA
216591012976	Putative MetA-pathway of phenol degradation; Region: Phenol_MetA_deg; pfam13557
216591012977	Probable gene remnant. CDS lacks appropriate stop codon due to the insertion of the downstream IS element. Similar to Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus) transposase, IS4 UniProt:Q46NI7 (EMBL:CP000092) (481 aa) fasta scores: E()=1.4e-130, 70.217% id in 460 aa
216591012978	HMMPfam hit to PF01609, Transposase DDE domain, score 6.5e-12
216591012979	PS00017 ATP/GTP-binding site motif A (P-loop).
216591012980	Probable gene remnant. Similar to the C-terminal region of Xanthomonas campestris insertion element IS476 hypothetical 39.2 kDa protein SWALL:YI61_XANCV (SWALL:P25438) (346 aa) fasta scores: E(): 2.6e-43, 66.66% id in 168 aa. CDS contains a frame shift mutation after codon 65
216591012981	HMMPfam hit to PF00665, Integrase core domain, score 1.6e-41
216591012982	CDS is interrupted by IS element insertion after codon 236. Similar to Burkholderia cenocepacia HI2424 hypothetical protein UniProt:Q4LZD5 (EMBL:AAHL01000003) (402 aa) fasta scores: E()=6.1e-42, 37.568% id in 370 aa
216591012983	Transposase; Region: HTH_Tnp_1; pfam01527
216591012984	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591012985	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591012986	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591012987	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591012988	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591012989	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591012990	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591012991	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591012992	Protein of unknown function (DUF3987); Region: DUF3987; pfam13148
216591012993	Predicted helix-turn-helix motif with score 1213.000, SD 3.32 at aa 33-54, sequence LTTEELATALSLSAQSIRKRYA
216591012994	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
216591012995	active site
216591012996	DNA binding site [nucleotide binding]
216591012997	Int/Topo IB signature motif; other site
216591012998	HMMPfam hit to PF00589, Phage integrase family, score 5.6e-07
216591012999	CDS contains a frameshift and an internal deletion after codon 381. Similar to Burkholderia mallei ABC transporter, ATP-binding protein UniProt:Q62LA0 (EMBL:CP000010) (446 aa) fasta scores: E()=3.9e-124, 92.152% id in 446 aa
216591013000	HMMPfam hit to PF00005, ABC transporter, score 3.9e-57
216591013001	PS00211 ABC transporters family signature.
216591013002	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013003	ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]; Region: COG4986
216591013004	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591013005	dimer interface [polypeptide binding]; other site
216591013006	conserved gate region; other site
216591013007	putative PBP binding loops; other site
216591013008	ABC-ATPase subunit interface; other site
216591013009	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591013010	dimer interface [polypeptide binding]; other site
216591013011	conserved gate region; other site
216591013012	putative PBP binding loops; other site
216591013013	ABC-ATPase subunit interface; other site
216591013014	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.4e-05
216591013015	12 probable transmembrane helices predicted for BCAL2603 by TMHMM2.0 at aa 26-48, 68-90, 103-125, 135-157, 207-229, 244-266, 345-367, 382-404, 421-443, 447-469, 490-512 and 552-571
216591013016	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.4e-05
216591013017	The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature; Region: BAR; cl12013
216591013018	HAMP domain; Region: HAMP; pfam00672
216591013019	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591013020	dimer interface [polypeptide binding]; other site
216591013021	phosphorylation site [posttranslational modification]
216591013022	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591013023	ATP binding site [chemical binding]; other site
216591013024	Mg2+ binding site [ion binding]; other site
216591013025	G-X-G motif; other site
216591013026	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 7.4e-26
216591013027	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 2.6e-13
216591013028	HMMPfam hit to PF00672, HAMP domain, score 2.1e-15
216591013029	2 probable transmembrane helices predicted for BCAL2605 by TMHMM2.0 at aa 10-29 and 147-169
216591013030	osmolarity response regulator; Provisional; Region: ompR; PRK09468
216591013031	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591013032	active site
216591013033	phosphorylation site [posttranslational modification]
216591013034	intermolecular recognition site; other site
216591013035	dimerization interface [polypeptide binding]; other site
216591013036	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591013037	DNA binding site [nucleotide binding]
216591013038	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.5e-21
216591013039	HMMPfam hit to PF00072, Response regulator receiver domain, score 8e-40
216591013040	Heavy-metal resistance; Region: Metal_resist; pfam13801
216591013041	Mitochondrial ribosomal protein subunit L20; Region: MRP-L20; pfam12824
216591013042	1 probable transmembrane helix predicted for BCAL2607 by TMHMM2.0 at aa 7-26
216591013043	Pirin-related protein [General function prediction only]; Region: COG1741
216591013044	Pirin; Region: Pirin; pfam02678
216591013045	HMMPfam hit to PF02678, Pirin, score 1.8e-33
216591013046	lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096
216591013047	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591013048	substrate binding pocket [chemical binding]; other site
216591013049	membrane-bound complex binding site; other site
216591013050	hinge residues; other site
216591013051	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 5e-90
216591013052	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591013053	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591013054	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591013055	dimer interface [polypeptide binding]; other site
216591013056	conserved gate region; other site
216591013057	putative PBP binding loops; other site
216591013058	ABC-ATPase subunit interface; other site
216591013059	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.2e-30
216591013060	5 probable transmembrane helices predicted for BCAL2610 by TMHMM2.0 at aa 15-37, 49-71, 91-109, 150-172 and 192-214
216591013061	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591013062	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591013063	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591013064	dimer interface [polypeptide binding]; other site
216591013065	conserved gate region; other site
216591013066	putative PBP binding loops; other site
216591013067	ABC-ATPase subunit interface; other site
216591013068	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.2e-16
216591013069	5 probable transmembrane helices predicted for BCAL2611 by TMHMM2.0 at aa 20-42, 63-85, 105-127, 167-189 and 199-221
216591013070	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591013071	Predicted helix-turn-helix motif with score 1046.000, SD 2.75 at aa 130-151, sequence YGEIEAARAYGMSTFTMYRRVI
216591013072	ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; Region: HisP; COG4598
216591013073	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591013074	Walker A/P-loop; other site
216591013075	ATP binding site [chemical binding]; other site
216591013076	Q-loop/lid; other site
216591013077	ABC transporter signature motif; other site
216591013078	Walker B; other site
216591013079	D-loop; other site
216591013080	H-loop/switch region; other site
216591013081	HMMPfam hit to PF00005, ABC transporter, score 2.9e-65
216591013082	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013083	PS00211 ABC transporters family signature.
216591013084	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591013085	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.3e-21
216591013086	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591013087	The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold; Region: PBP2_Pa0477; cd08468
216591013088	putative substrate binding pocket [chemical binding]; other site
216591013089	dimerization interface [polypeptide binding]; other site
216591013090	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-18
216591013091	Predicted helix-turn-helix motif with score 1327.000, SD 3.71 at aa 24-45, sequence RSVAAAAHELALSPSALSHALA
216591013092	PS00044 Bacterial regulatory proteins, lysR family signature.
216591013093	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.7e-22
216591013094	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591013095	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591013096	trimer interface [polypeptide binding]; other site
216591013097	eyelet of channel; other site
216591013098	Nitrogen regulatory protein PII [Amino acid transport and metabolism]; Region: GlnK; COG0347
216591013099	Nitrogen regulatory protein P-II; Region: P-II; smart00938
216591013100	HMMPfam hit to PF00543, Nitrogen regulatory protein P-II, score 1.3e-68
216591013101	PS00638 P-II protein C-terminal region signature.
216591013102	PS00496 P-II protein urydylation site.
216591013103	NAD synthetase; Provisional; Region: PRK13981
216591013104	Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases); Region: GAT_Gln-NAD-synth; cd07570
216591013105	multimer interface [polypeptide binding]; other site
216591013106	active site
216591013107	catalytic triad [active]
216591013108	protein interface 1 [polypeptide binding]; other site
216591013109	NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD...; Region: NAD_synthase; cd00553
216591013110	homodimer interface [polypeptide binding]; other site
216591013111	NAD binding pocket [chemical binding]; other site
216591013112	ATP binding pocket [chemical binding]; other site
216591013113	Mg binding site [ion binding]; other site
216591013114	active-site loop [active]
216591013115	HMMPfam hit to PF02540, NAD synthase, score 1.8e-90
216591013116	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, score 2.8e-12
216591013117	Acetyltransferase (GNAT) domain; Region: Acetyltransf_6; cl17497
216591013118	Protein of unknown function, DUF482; Region: DUF482; pfam04339
216591013119	HMMPfam hit to PF04339, Protein of unknown function, DUF482, score 3.9e-164
216591013120	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; pfam00933
216591013121	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
216591013122	Glycosyl hydrolase family 3 C-terminal domain; Region: Glyco_hydro_3_C; pfam01915
216591013123	Fibronectin type III-like domain; Region: Fn3-like; pfam14310
216591013124	HMMPfam hit to PF01915, Glycosyl hydrolase family 3 C termina, score 2.7e-68
216591013125	HMMPfam hit to PF00933, Glycosyl hydrolase family 3 N termina, score 8.3e-95
216591013126	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013127	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591013128	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591013129	PS00041 Bacterial regulatory proteins, araC family signature.
216591013130	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 7.6e-07
216591013131	The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1; Region: GIY-YIG_UPF0213; cd10456
216591013132	GIY-YIG motif/motif A; other site
216591013133	putative active site [active]
216591013134	putative metal binding site [ion binding]; other site
216591013135	HMMPfam hit to PF01541, GIY-YIG catalytic domain, score 6.9e-13
216591013136	Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers; Region: pyrophosphatase; cd00412
216591013137	dimer interface [polypeptide binding]; other site
216591013138	substrate binding site [chemical binding]; other site
216591013139	metal binding sites [ion binding]; metal-binding site
216591013140	HMMPfam hit to PF00719, Inorganic pyrophosphatase, score 8e-58
216591013141	PS00387 Inorganic pyrophosphatase signature.
216591013142	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591013143	Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like; Region: ALDH_AAS00426; cd07109
216591013144	NAD(P) binding site [chemical binding]; other site
216591013145	catalytic residues [active]
216591013146	catalytic residues [active]
216591013147	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.7e-207
216591013148	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591013149	PS00070 Aldehyde dehydrogenases cysteine active site.
216591013150	putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR; Region: BKR_3_SDR_c; cd05345
216591013151	3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK07231
216591013152	putative NAD(P) binding site [chemical binding]; other site
216591013153	active site
216591013154	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.4e-30
216591013155	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591013156	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591013157	putative substrate translocation pore; other site
216591013158	12 probable transmembrane helices predicted for BCAL2625 by TMHMM2.0 at aa 23-40, 62-84, 97-119, 123-145, 152-174, 184-206, 252-274, 284-306, 319-338, 342-364, 371-393 and 408-427
216591013159	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.7e-60
216591013160	Helix-turn-helix domain; Region: HTH_17; pfam12728
216591013161	Predicted helix-turn-helix motif with score 1033.000, SD 2.71 at aa 3-24, sequence HTVEDTAARLRVHPKTVLRFIR
216591013162	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591013163	Domain of unknown function (DUF4180); Region: DUF4180; pfam13788
216591013164	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 0.00043
216591013165	heme biosynthesis-associated TPR protein; Region: TPR_hemY_coli; TIGR00540
216591013166	HemY protein N-terminus; Region: HemY_N; pfam07219
216591013167	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591013168	TPR motif; other site
216591013169	binding surface
216591013170	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.0039
216591013171	HMMPfam hit to PF07219, HemY protein N-terminus, score 8e-21
216591013172	2 probable transmembrane helices predicted for BCAL2628 by TMHMM2.0 at aa 5-27 and 42-64
216591013173	bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed; Region: PRK06975
216591013174	Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in...; Region: HemD; cd06578
216591013175	active site
216591013176	putative uroporphyrinogen III C-methyltransferase; Provisional; Region: PRK10920
216591013177	HMMPfam hit to PF04375, HemX, score 3.9e-56
216591013178	1 probable transmembrane helix predicted for BCAL2629 by TMHMM2.0 at aa 326-348
216591013179	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013180	HMMPfam hit to PF02602, Uroporphyrinogen-III synthase HemD, score 4.3e-07
216591013181	porphobilinogen deaminase; Reviewed; Region: hemC; PRK00072
216591013182	Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cd00494
216591013183	domain interfaces; other site
216591013184	active site
216591013185	HMMPfam hit to PF03900, Porphobilinogen deaminase, C-terminal, score 6.4e-15
216591013186	PS00533 Porphobilinogen deaminase cofactor-binding site.
216591013187	HMMPfam hit to PF01379, Porphobilinogen deaminase, dipyrometh, score 6.5e-120
216591013188	phosphoenolpyruvate carboxylase; Reviewed; Region: PRK00009
216591013189	Phosphoenolpyruvate carboxylase [Energy production and conversion]; Region: Ppc; COG2352
216591013190	HMMPfam hit to PF00311, Phosphoenolpyruvate carboxylase, score 3.1e-88
216591013191	PS00781 Phosphoenolpyruvate carboxylase active site 1.
216591013192	PS00393 Phosphoenolpyruvate carboxylase active site 2.
216591013193	Methyltransferase domain; Region: Methyltransf_31; pfam13847
216591013194	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591013195	S-adenosylmethionine binding site [chemical binding]; other site
216591013196	HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase family, score 3e-07
216591013197	HMMPfam hit to PF08241, Methyltransferase domain, score 5.5e-30
216591013198	HMMPfam hit to PF08242, Methyltransferase domain, score 4.1e-19
216591013199	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591013200	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591013201	sequence-specific DNA binding site [nucleotide binding]; other site
216591013202	salt bridge; other site
216591013203	Predicted helix-turn-helix motif with score 1733.000, SD 5.09 at aa 49-70, sequence LRREEVAQLCGVSPTWYTWIEQ
216591013204	Spore Coat Protein U domain; Region: SCPU; pfam05229
216591013205	Uncharacterized secreted protein [Function unknown]; Region: COG5430
216591013206	HMMPfam hit to PF05229, Spore Coat Protein U domain, score 9.7e-20
216591013207	HMMPfam hit to PF05229, Spore Coat Protein U domain, score 3.7e-06
216591013208	1 probable transmembrane helix predicted for BCAL2634a by TMHMM2.0 at aa 12-31
216591013209	Uncharacterized secreted protein [Function unknown]; Region: COG5430
216591013210	2 probable transmembrane helices predicted for BCAL2635 by TMHMM2.0 at aa 9-31 and 46-68
216591013211	HMMPfam hit to PF05229, Spore Coat Protein U domain, score 3.8e-10
216591013212	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
216591013213	Gram-negative pili assembly chaperone, N-terminal domain; Region: Pili_assembly_N; pfam00345
216591013214	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
216591013215	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
216591013216	PapC C-terminal domain; Region: PapC_C; pfam13953
216591013217	HMMPfam hit to PF00577, Fimbrial Usher protein, score 1.5e-11
216591013218	argininosuccinate lyase; Provisional; Region: PRK00855
216591013219	Argininosuccinate lyase (argininosuccinase, ASAL); Region: Argininosuccinate_lyase; cd01359
216591013220	active sites [active]
216591013221	tetramer interface [polypeptide binding]; other site
216591013222	HMMPfam hit to PF00206, Lyase, score 5e-89
216591013223	PS00163 Fumarate lyases signature.
216591013224	Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637
216591013225	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591013226	motif II; other site
216591013227	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1.7e-28
216591013228	Protein of unknown function (DUF1311); Region: DUF1311; pfam07007
216591013229	Protein of unknown function (DUF1311); Region: DUF1311; cl01530
216591013230	1 probable transmembrane helix predicted for BCAL2640 by TMHMM2.0 at aa 13-35
216591013231	Orn/Lys/Arg decarboxylase, N-terminal domain; Region: OKR_DC_1_N; pfam03709
216591013232	Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]; Region: LdcC; COG1982
216591013233	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591013234	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591013235	catalytic residue [active]
216591013236	Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711
216591013237	HMMPfam hit to PF03711, Orn/Lys/Arg decarboxylase, C-terminal doma, score 4e-73
216591013238	HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase, major domain, score 5.9e-192
216591013239	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013240	PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site.
216591013241	HMMPfam hit to PF03709, Orn/Lys/Arg decarboxylase, N-terminal doma, score 1.2e-41
216591013242	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
216591013243	trimer interface [polypeptide binding]; other site
216591013244	active site
216591013245	Copper/zinc superoxide dismutase (SODC); Region: Sod_Cu; pfam00080
216591013246	E-class dimer interface [polypeptide binding]; other site
216591013247	P-class dimer interface [polypeptide binding]; other site
216591013248	active site
216591013249	Cu2+ binding site [ion binding]; other site
216591013250	Zn2+ binding site [ion binding]; other site
216591013251	HMMPfam hit to PF00080, Copper/zinc superoxide dismutase (SODC), score 1.5e-11
216591013252	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013253	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Mrp; COG0489
216591013254	MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037
216591013255	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 4.2e-14
216591013256	PS01215 Mrp family signature.
216591013257	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013258	HMMPfam hit to PF01883, Domain of unknown function DUF59, score 0.00015
216591013259	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
216591013260	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591013261	ligand binding site [chemical binding]; other site
216591013262	2 probable transmembrane helices predicted for BCAL2645 by TMHMM2.0 at aa 5-27 and 42-64
216591013263	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013264	HMMPfam hit to PF05433, Rickettsia 17 kDa surface antigen, score 1e-08
216591013265	HMMPfam hit to PF00691, OmpA family, score 5.8e-37
216591013266	methionyl-tRNA synthetase; Reviewed; Region: metG; PRK00133
216591013267	catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814
216591013268	active site
216591013269	HIGH motif; other site
216591013270	KMSKS motif; other site
216591013271	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
216591013272	tRNA binding surface [nucleotide binding]; other site
216591013273	anticodon binding site; other site
216591013274	tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins.  This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties.  MetRS aminoacylates methionine...; Region: tRNA_bind_EcMetRS_like; cd02800
216591013275	dimer interface [polypeptide binding]; other site
216591013276	putative tRNA-binding site [nucleotide binding]; other site
216591013277	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591013278	HMMPfam hit to PF01588, Putative tRNA binding domain, score 6.8e-36
216591013279	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2911
216591013280	Family of unknown function (DUF490); Region: DUF490; pfam04357
216591013281	HMMPfam hit to PF04357, Family of unknown function (DUF490), score 9.8e-38
216591013282	1 probable transmembrane helix predicted for BCAL2647 by TMHMM2.0 at aa 36-58
216591013283	Outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: COG0729
216591013284	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
216591013285	Surface antigen; Region: Bac_surface_Ag; pfam01103
216591013286	HMMPfam hit to PF01103, Surface antigen, score 6.5e-49
216591013287	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 5.8e-08
216591013288	Protein of unknown function (DUF3460); Region: DUF3460; pfam11943
216591013289	Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]; Region: scpA; COG1354
216591013290	HMMPfam hit to PF02616, ScpA/B protein, score 3.5e-25
216591013291	pantoate--beta-alanine ligase; Region: panC; TIGR00018
216591013292	Pantoate-beta-alanine ligase; Region: PanC; cd00560
216591013293	active site
216591013294	ATP-binding site [chemical binding]; other site
216591013295	pantoate-binding site; other site
216591013296	HXXH motif; other site
216591013297	HMMPfam hit to PF02569, Pantoate-beta-alanine ligase, score 1.1e-107
216591013298	Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent  decarboxylase in beta-alanine production; Region: Asp_decarbox; cd06919
216591013299	tetramerization interface [polypeptide binding]; other site
216591013300	active site
216591013301	HMMPfam hit to PF02261, Aspartate decarboxylase, score 6.3e-77
216591013302	PS00678 Trp-Asp (WD) repeats signature.
216591013303	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
216591013304	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591013305	P-loop; other site
216591013306	Magnesium ion binding site [ion binding]; other site
216591013307	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 7.6e-21
216591013308	Predicted membrane protein [Function unknown]; Region: COG2259
216591013309	4 probable transmembrane helices predicted for BCAL2654 by TMHMM2.0 at aa 13-35, 45-67, 74-91 and 106-128
216591013310	HMMPfam hit to PF07681, DoxX, score 1e-34
216591013311	cobyric acid synthase; Provisional; Region: PRK00784
216591013312	dithiobiotin synthetase; Reviewed; Region: bioD; PRK00090
216591013313	Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ); Region: GATase1_CobQ; cd01750
216591013314	catalytic triad [active]
216591013315	HMMPfam hit to PF07685, CobB/CobQ-like glutamine amidotransferase do, score 7.5e-70
216591013316	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 1.2e-52
216591013317	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013318	Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a...; Region: CobU; cd00544
216591013319	homotrimer interface [polypeptide binding]; other site
216591013320	Walker A motif; other site
216591013321	GTP binding site [chemical binding]; other site
216591013322	Walker B motif; other site
216591013323	HMMPfam hit to PF02283, Cobinamide kinase / cobinamide phosphate gua, score 1.3e-61
216591013324	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013325	cobalamin biosynthesis protein; Provisional; Region: cobD; PRK01209
216591013326	HMMPfam hit to PF03186, CobD/Cbib protein, score 1.9e-81
216591013327	3 probable transmembrane helices predicted for BCAL2658 by TMHMM2.0 at aa 54-76, 154-176 and 288-310
216591013328	putative threonine-phosphate decarboxylase; Provisional; Region: PRK06959
216591013329	L-threonine-O-3-phosphate decarboxylase; Region: L_thr_O3P_dcar; TIGR01140
216591013330	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591013331	catalytic residue [active]
216591013332	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.6e-13
216591013333	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.
216591013334	vitamin B12-transporter protein BtuF; Provisional; Region: PRK03379
216591013335	Cobalamin binding protein BtuF.  These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species.  They belong to the TroA superfamily of helical backbone metal receptor...; Region: BtuF; cd01144
216591013336	cobalamin binding residues [chemical binding]; other site
216591013337	putative BtuC binding residues; other site
216591013338	dimer interface [polypeptide binding]; other site
216591013339	HMMPfam hit to PF01497, Periplasmic binding protein, score 9.9e-26
216591013340	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
216591013341	catalytic core [active]
216591013342	HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 1.5e-21
216591013343	cobalamin synthase; Reviewed; Region: cobS; PRK00235
216591013344	HMMPfam hit to PF02654, Cobalamin-5-phosphate synthase, score 2e-12
216591013345	6 probable transmembrane helices predicted for BCAL2662 by TMHMM2.0 at aa 7-29, 34-56, 63-80, 110-129, 176-193 and 197-214
216591013346	Phosphoribosyltransferase; Region: DBI_PRT; pfam02277
216591013347	Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT; Region: DMB-PRT_CobT; cd02439
216591013348	putative dimer interface [polypeptide binding]; other site
216591013349	active site pocket [active]
216591013350	putative cataytic base [active]
216591013351	HMMPfam hit to PF02277, Phosphoribosyltransferase, score 2.1e-159
216591013352	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013353	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
216591013354	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
216591013355	Walker A/P-loop; other site
216591013356	ATP binding site [chemical binding]; other site
216591013357	Q-loop/lid; other site
216591013358	ABC transporter signature motif; other site
216591013359	Walker B; other site
216591013360	D-loop; other site
216591013361	H-loop/switch region; other site
216591013362	HMMPfam hit to PF00005, ABC transporter, score 2.8e-49
216591013363	PS00211 ABC transporters family signature.
216591013364	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013365	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
216591013366	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
216591013367	ABC-ATPase subunit  interface; other site
216591013368	dimer interface [polypeptide binding]; other site
216591013369	putative PBP binding regions; other site
216591013370	HMMPfam hit to PF01032, FecCD transport family, score 3.9e-82
216591013371	8 probable transmembrane helices predicted for BCAL2665 by TMHMM2.0 at aa 12-34, 65-87, 94-116, 121-138, 150-172, 197-219, 240-262 and 304-326
216591013372	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013373	TATA element modulatory factor 1 TATA binding; Region: TMF_TATA_bd; pfam12325
216591013374	Cell division protein ZapA; Region: ZapA; pfam05164
216591013375	HMMPfam hit to PF05164, Cell division protein ZapA, score 2.8e-19
216591013376	EVE domain; Region: EVE; cl00728
216591013377	HMMPfam hit to PF04543, Family of unknown function (DUF589), score 1.5e-79
216591013378	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591013379	Protein of unknown function (DUF541); Region: SIMPL; cl01077
216591013380	1 probable transmembrane helix predicted for BCAL2669 by TMHMM2.0 at aa 7-29
216591013381	HMMPfam hit to PF04402, Protein of unknown function (DUF541), score 4.3e-20
216591013382	prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052
216591013383	HMMPfam hit to PF01790, Prolipoprotein diacylglyceryl transferase, score 3.8e-135
216591013384	5 probable transmembrane helices predicted for BCAL2670 by TMHMM2.0 at aa 17-39, 60-79, 94-116, 231-248 and 268-287
216591013385	PS01311 Prolipoprotein diacylglyceryl transferase signature.
216591013386	DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986
216591013387	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591013388	The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold; Region: PBP2_IlvR; cd08453
216591013389	putative dimerization interface [polypeptide binding]; other site
216591013390	putative substrate binding pocket [chemical binding]; other site
216591013391	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.4e-45
216591013392	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.4e-20
216591013393	PS00044 Bacterial regulatory proteins, lysR family signature.
216591013394	Predicted helix-turn-helix motif with score 1485.000, SD 4.24 at aa 21-42, sequence RHFGRAAERLSMTQPPLSQAIR
216591013395	dihydroxy-acid dehydratase; Provisional; Region: PRK00911
216591013396	HMMPfam hit to PF00920, Dehydratase family, score 5.5e-283
216591013397	PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1.
216591013398	Cytochrome c; Region: Cytochrom_C; cl11414
216591013399	HMMPfam hit to PF00034, Cytochrome c, score 8.7e-09
216591013400	PS00190 Cytochrome c family heme-binding site signature.
216591013401	Protein of unknown function (DUF2486); Region: DUF2486; pfam10667
216591013402	DNA polymerase III chi subunit, HolC; Region: DNA_pol3_chi; pfam04364
216591013403	HMMPfam hit to PF04364, DNA polymerase III chi subunit, HolC, score 3.5e-28
216591013404	multifunctional aminopeptidase A; Provisional; Region: PRK00913
216591013405	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
216591013406	interface (dimer of trimers) [polypeptide binding]; other site
216591013407	Substrate-binding/catalytic site; other site
216591013408	Zn-binding sites [ion binding]; other site
216591013409	HMMPfam hit to PF00883, Cytosol aminopeptidase family, cataly, score 6.4e-184
216591013410	PS00631 Cytosol aminopeptidase signature.
216591013411	HMMPfam hit to PF02789, Cytosol aminopeptidase family, N-term, score 1.3e-31
216591013412	Predicted permeases [General function prediction only]; Region: COG0795
216591013413	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
216591013414	HMMPfam hit to PF03739, Predicted permease YjgP/YjgQ family, score 5.3e-48
216591013415	6 probable transmembrane helices predicted for BCAL2677 by TMHMM2.0 at aa 13-35, 50-72, 102-124, 264-286, 295-314 and 324-346
216591013416	Predicted permeases [General function prediction only]; Region: COG0795; cl12074
216591013417	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
216591013418	HMMPfam hit to PF03739, Predicted permease YjgP/YjgQ family, score 1.7e-46
216591013419	6 probable transmembrane helices predicted for BCAL2678 by TMHMM2.0 at aa 12-34, 61-83, 103-125, 299-318, 325-347 and 357-379
216591013420	Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]; Region: COG2138
216591013421	Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase; Region: CbiX_SirB_N; cd03416
216591013422	putative active site [active]
216591013423	HMMPfam hit to PF01903, CbiX, score 2e-34
216591013424	Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); Region: SUMT; cd11642
216591013425	active site
216591013426	SAM binding site [chemical binding]; other site
216591013427	homodimer interface [polypeptide binding]; other site
216591013428	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 3.7e-62
216591013429	PS00840 Uroporphyrin-III C-methyltransferase signature 2.
216591013430	PS00839 Uroporphyrin-III C-methyltransferase signature 1.
216591013431	GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]; Region: CysN; COG2895
216591013432	CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex; Region: CysN_ATPS; cd04166
216591013433	CysD dimerization site [polypeptide binding]; other site
216591013434	G1 box; other site
216591013435	putative GEF interaction site [polypeptide binding]; other site
216591013436	GTP/Mg2+ binding site [chemical binding]; other site
216591013437	Switch I region; other site
216591013438	G2 box; other site
216591013439	G3 box; other site
216591013440	Switch II region; other site
216591013441	G4 box; other site
216591013442	G5 box; other site
216591013443	CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN...; Region: CysN_NodQ_II; cd03695
216591013444	TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN...; Region: CysN_NoDQ_III; cd04095
216591013445	HMMPfam hit to PF03144, Elongation factor Tu domain, score 1.2e-07
216591013446	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 3.5e-61
216591013447	PS00301 GTP-binding elongation factors signature.
216591013448	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013449	sulfate adenylyltransferase, small subunit; Region: CysD; TIGR02039
216591013450	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
216591013451	Active Sites [active]
216591013452	Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide; Region: AANH_like; cl00292
216591013453	HMMPfam hit to PF01507, Phosphoadenosine phosphosulfate reductase, score 7.3e-83
216591013454	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]; Region: CysH; COG0175
216591013455	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
216591013456	Active Sites [active]
216591013457	HMMPfam hit to PF01507, Phosphoadenosine phosphosulfate reductase, score 5.5e-48
216591013458	PS00079 Multicopper oxidases signature 1.
216591013459	Bacterial protein of unknown function (DUF934); Region: DUF934; pfam06073
216591013460	HMMPfam hit to PF06073, Bacterial protein of unknown function (DUF93, score 6.5e-74
216591013461	Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]; Region: CysI; COG0155
216591013462	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
216591013463	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
216591013464	HMMPfam hit to PF01077, Nitrite and sulphite reductase 4Fe-4S do, score 2.5e-11
216591013465	HMMPfam hit to PF03460, Nitrite/Sulfite reductase ferredoxin-lik, score 4.8e-12
216591013466	HMMPfam hit to PF01077, Nitrite and sulphite reductase 4Fe-4S do, score 1.7e-56
216591013467	HMMPfam hit to PF03460, Nitrite/Sulfite reductase ferredoxin-lik, score 1.1e-17
216591013468	transcriptional regulator CysB-like protein; Reviewed; Region: PRK12684
216591013469	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591013470	The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold; Region: PBP2_CysB_like; cd08413
216591013471	substrate binding site [chemical binding]; other site
216591013472	dimerization interface [polypeptide binding]; other site
216591013473	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3e-17
216591013474	Predicted helix-turn-helix motif with score 1416.000, SD 4.01 at aa 17-38, sequence FNLTEAAKALYTSQPGVSKAII
216591013475	PS00044 Bacterial regulatory proteins, lysR family signature.
216591013476	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.6e-47
216591013477	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591013478	Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids; Region: PBP1_ABC-type_HAAT_like; cd06333
216591013479	putative ligand binding site [chemical binding]; other site
216591013480	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013481	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591013482	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591013483	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591013484	putative effector binding pocket; other site
216591013485	dimerization interface [polypeptide binding]; other site
216591013486	HMMPfam hit to PF03466, LysR substrate binding domain, score 9e-46
216591013487	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.3e-18
216591013488	PS00044 Bacterial regulatory proteins, lysR family signature.
216591013489	Predicted helix-turn-helix motif with score 1753.000, SD 5.16 at aa 21-42, sequence GTFARAGEAMGLTQPAVSRAVA
216591013490	short chain dehydrogenase; Provisional; Region: PRK12937
216591013491	tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; Region: THN_reductase-like_SDR_c; cd05362
216591013492	NADP binding site [chemical binding]; other site
216591013493	homodimer interface [polypeptide binding]; other site
216591013494	active site
216591013495	substrate binding site [chemical binding]; other site
216591013496	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.6e-36
216591013497	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 3e-05
216591013498	HMMPfam hit to PF07993, Male sterility protein, score 0.0049
216591013499	short chain dehydrogenase; Provisional; Region: PRK12937
216591013500	17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374
216591013501	NADP binding site [chemical binding]; other site
216591013502	active site
216591013503	steroid binding site; other site
216591013504	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.3e-24
216591013505	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 0.00042
216591013506	HMMPfam hit to PF07993, Male sterility protein, score 0.00045
216591013507	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591013508	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 0.00016
216591013509	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591013510	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591013511	LysR substrate binding domain; Region: LysR_substrate; pfam03466
216591013512	dimerization interface [polypeptide binding]; other site
216591013513	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.7e-15
216591013514	Predicted helix-turn-helix motif with score 1310.000, SD 3.65 at aa 39-60, sequence RGFAPAAERLALTPSAVSGHIK
216591013515	PS00044 Bacterial regulatory proteins, lysR family signature.
216591013516	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.8e-27
216591013517	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591013518	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591013519	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
216591013520	putative effector binding pocket; other site
216591013521	putative dimerization interface [polypeptide binding]; other site
216591013522	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.4e-38
216591013523	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.2e-15
216591013524	Predicted helix-turn-helix motif with score 1086.000, SD 2.89 at aa 17-38, sequence GSFIKAAHALDAPRATVSAAVQ
216591013525	short chain dehydrogenase; Provisional; Region: PRK12744
216591013526	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591013527	NAD(P) binding site [chemical binding]; other site
216591013528	active site
216591013529	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.5e-17
216591013530	DinB superfamily; Region: DinB_2; pfam12867
216591013531	CopC domain; Region: CopC; pfam04234
216591013532	HMMPfam hit to PF04234, Copper resistance protein CopC, score 2.7e-28
216591013533	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
216591013534	Pseudouridine synthase, Escherichia coli RsuA like; Region: PseudoU_synth_RsuA; cd02553
216591013535	active site
216591013536	uracil binding [chemical binding]; other site
216591013537	HMMPfam hit to PF01479, S4 domain, score 0.0042
216591013538	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 3.7e-18
216591013539	PS01149 Rsu family of pseudouridine synthase signature.
216591013540	2 probable transmembrane helices predicted for BCAL2698 by TMHMM2.0 at aa 7-29 and 39-61
216591013541	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591013542	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591013543	NAD(P) binding site [chemical binding]; other site
216591013544	active site
216591013545	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0002
216591013546	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated; Region: PRK07609
216591013547	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591013548	catalytic loop [active]
216591013549	iron binding site [ion binding]; other site
216591013550	NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN; Region: flavin_oxioreductase; cd06189
216591013551	FAD binding pocket [chemical binding]; other site
216591013552	FAD binding motif [chemical binding]; other site
216591013553	phosphate binding motif [ion binding]; other site
216591013554	beta-alpha-beta structure motif; other site
216591013555	NAD binding pocket [chemical binding]; other site
216591013556	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 2.4e-18
216591013557	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591013558	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 2.3e-27
216591013559	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 1.9e-35
216591013560	acetylornithine transaminase protein; Provisional; Region: argD; PRK03715
216591013561	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591013562	inhibitor-cofactor binding pocket; inhibition site
216591013563	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591013564	catalytic residue [active]
216591013565	HMMPfam hit to PF00202, Aminotransferase class-III, score 1.7e-113
216591013566	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591013567	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
216591013568	putative acetyltransferase; Provisional; Region: PRK03624
216591013569	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591013570	Coenzyme A binding pocket [chemical binding]; other site
216591013571	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.1e-20
216591013572	Uncharacterized conserved protein (DUF2278); Region: DUF2278; pfam10042
216591013573	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591013574	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591013575	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591013576	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591013577	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591013578	putative transposase OrfB; Reviewed; Region: PHA02517
216591013579	HTH-like domain; Region: HTH_21; pfam13276
216591013580	Integrase core domain; Region: rve; pfam00665
216591013581	Integrase core domain; Region: rve_2; pfam13333
216591013582	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591013583	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
216591013584	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591013585	Walker A/P-loop; other site
216591013586	ATP binding site [chemical binding]; other site
216591013587	Q-loop/lid; other site
216591013588	ABC transporter signature motif; other site
216591013589	Walker B; other site
216591013590	D-loop; other site
216591013591	H-loop/switch region; other site
216591013592	HMMPfam hit to PF00005, ABC transporter, score 5.3e-48
216591013593	PS00211 ABC transporters family signature.
216591013594	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013595	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
216591013596	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591013597	Walker A/P-loop; other site
216591013598	ATP binding site [chemical binding]; other site
216591013599	Q-loop/lid; other site
216591013600	ABC transporter signature motif; other site
216591013601	Walker B; other site
216591013602	D-loop; other site
216591013603	H-loop/switch region; other site
216591013604	HMMPfam hit to PF00005, ABC transporter, score 6.3e-55
216591013605	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013606	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
216591013607	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591013608	TM-ABC transporter signature motif; other site
216591013609	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.2e-36
216591013610	8 probable transmembrane helices predicted for BCAL2707 by TMHMM2.0 at aa 23-45, 55-74, 79-98, 113-135, 142-161, 205-224, 255-277 and 292-314
216591013611	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591013612	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591013613	TM-ABC transporter signature motif; other site
216591013614	7 probable transmembrane helices predicted for BCAL2708 by TMHMM2.0 at aa 13-35, 67-89, 102-124, 153-175, 203-225, 245-267 and 280-302
216591013615	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.8e-44
216591013616	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013617	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]; Region: lytB; COG0761
216591013618	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed; Region: ispH; PRK01045
216591013619	HMMPfam hit to PF02401, LytB protein, score 1.5e-162
216591013620	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
216591013621	FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]; Region: SlpA; COG1047
216591013622	HMMPfam hit to PF00254, FKBP-type peptidyl-prolyl cis-trans isomeras, score 2.9e-07
216591013623	hypothetical protein; Reviewed; Region: PRK00024
216591013624	Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071
216591013625	MPN+ (JAMM) motif; other site
216591013626	Zinc-binding site [ion binding]; other site
216591013627	HMMPfam hit to PF04002, RadC, DNA repair protein, score 4.6e-61
216591013628	PS01302 DNA repair protein radC family signature.
216591013629	50S ribosomal protein L28; Reviewed; Region: rpmB; PRK00359
216591013630	HMMPfam hit to PF00830, Ribosomal L28 family, score 1e-29
216591013631	50S ribosomal protein L33; Validated; Region: rpmG; PRK00595
216591013632	HMMPfam hit to PF00471, Ribosomal protein L33, score 2e-17
216591013633	PS00582 Ribosomal protein L33 signature.
216591013634	L-aspartate oxidase; Provisional; Region: PRK09077
216591013635	L-aspartate oxidase; Provisional; Region: PRK06175
216591013636	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
216591013637	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 7.6e-05
216591013638	HMMPfam hit to PF00890, FAD binding domain, score 2.1e-132
216591013639	HMMPfam hit to PF02910, Fumarate reductase/succinate dehydroge, score 2.2e-07
216591013640	nicotinate-nucleotide pyrophosphorylase; Provisional; Region: PRK06978
216591013641	Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with...; Region: QPRTase; cd01572
216591013642	dimerization interface [polypeptide binding]; other site
216591013643	active site
216591013644	HMMPfam hit to PF01729, Quinolinate phosphoribosyl transferase, C-t, score 1.9e-79
216591013645	HMMPfam hit to PF02749, Quinolinate phosphoribosyl transferase, N-t, score 2e-28
216591013646	quinolinate synthetase; Provisional; Region: PRK09375
216591013647	The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide...; Region: Delta9-FADS-like; cd03505
216591013648	Fatty acid desaturase; Region: FA_desaturase; pfam00487
216591013649	Di-iron ligands [ion binding]; other site
216591013650	Transposase; Region: DDE_Tnp_ISL3; pfam01610
216591013651	HMMPfam hit to PF00487, Fatty acid desaturase, score 1.8e-08
216591013652	3 probable transmembrane helices predicted for BCAL2719 by TMHMM2.0 at aa 18-40, 142-164 and 169-188
216591013653	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
216591013654	Mechanosensitive ion channel; Region: MS_channel; pfam00924
216591013655	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 3.6e-52
216591013656	6 probable transmembrane helices predicted for BCAL2720 by TMHMM2.0 at aa 24-46, 67-86, 96-118, 131-153, 173-195 and 224-246
216591013657	ribosomal RNA small subunit methyltransferase RsmB; Region: rsmB; TIGR00563
216591013658	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591013659	HMMPfam hit to PF01189, NOL1/NOP2/sun family, score 2.6e-56
216591013660	phosphoribosylglycinamide formyltransferase; Reviewed; Region: purN; PRK05647
216591013661	Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Region: FMT_core_GART; cd08645
216591013662	active site
216591013663	substrate binding site [chemical binding]; other site
216591013664	cosubstrate binding site; other site
216591013665	catalytic site [active]
216591013666	HMMPfam hit to PF00551, Formyl transferase, score 6.2e-70
216591013667	bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627
216591013668	FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064
216591013669	active site
216591013670	Riboflavin kinase; Region: Flavokinase; smart00904
216591013671	HMMPfam hit to PF06574, FAD synthetase, score 4e-79
216591013672	HMMPfam hit to PF01467, Cytidylyltransferase, score 0.0085
216591013673	HMMPfam hit to PF01687, Riboflavin kinase, score 9.8e-38
216591013674	isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK05743
216591013675	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
216591013676	active site
216591013677	HIGH motif; other site
216591013678	nucleotide binding site [chemical binding]; other site
216591013679	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
216591013680	active site
216591013681	KMSKS motif; other site
216591013682	Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_BEm; cd07960
216591013683	tRNA binding surface [nucleotide binding]; other site
216591013684	anticodon binding site; other site
216591013685	Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827
216591013686	HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 4.4e-290
216591013687	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591013688	HMMPfam hit to PF08264, Anticodon-binding domain, score 8e-46
216591013689	HMMPfam hit to PF06827, Zinc finger found in FPG and IleRS, score 5.4e-14
216591013690	lipoprotein signal peptidase; Reviewed; Region: lspA; PRK00376
216591013691	5 probable transmembrane helices predicted for BCAL2725 by TMHMM2.0 at aa 4-26, 33-55, 70-92, 99-121 and 134-156
216591013692	HMMPfam hit to PF01252, Signal peptidase (SPase) II, score 4.2e-51
216591013693	PS00855 Signal peptidases II signature.
216591013694	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579
216591013695	Flavoprotein; Region: Flavoprotein; pfam02441
216591013696	DNA / pantothenate metabolism flavoprotein; Region: DFP; pfam04127
216591013697	HMMPfam hit to PF02441, Flavoprotein, score 7.8e-43
216591013698	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013699	HMMPfam hit to PF04127, DNA / pantothenate metabolism flavoprote, score 3.7e-22
216591013700	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
216591013701	trimer interface [polypeptide binding]; other site
216591013702	active site
216591013703	HMMPfam hit to PF00692, dUTPase, score 3.2e-46
216591013704	Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]; Region: COG4705
216591013705	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591013706	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591013707	Repeat of Unknown Function (DUF347); Region: DUF347; pfam03988
216591013708	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 6.2e-11
216591013709	7 probable transmembrane helices predicted for BCAL2728 by TMHMM2.0 at aa 28-50, 63-80, 90-112, 128-150, 154-176, 183-205 and 215-237
216591013710	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 5.5e-09
216591013711	HMMPfam hit to PF03988, Repeat of Unknown Function (DUF347), score 8.5e-13
216591013712	Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]; Region: AnsP; COG1113
216591013713	HMMPfam hit to PF00324, Amino acid permease, score 4.2e-98
216591013714	12 probable transmembrane helices predicted for BCAL2729 by TMHMM2.0 at aa 21-43, 47-69, 103-125, 135-157, 170-192, 207-229, 249-271, 286-308, 342-361, 366-385, 405-427 and 431-453
216591013715	PS00044 Bacterial regulatory proteins, lysR family signature.
216591013716	PS00218 Amino acid permeases signature.
216591013717	ATP-dependent Clp protease ATP-binding subunit clpA; Region: ClpA; TIGR02639
216591013718	Clp amino terminal domain; Region: Clp_N; pfam02861
216591013719	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591013720	Walker A motif; other site
216591013721	ATP binding site [chemical binding]; other site
216591013722	Walker B motif; other site
216591013723	arginine finger; other site
216591013724	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591013725	Walker A motif; other site
216591013726	ATP binding site [chemical binding]; other site
216591013727	Walker B motif; other site
216591013728	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
216591013729	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 3.9e-91
216591013730	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 6.4e-09
216591013731	PS00871 Chaperonins clpA/B signature 2.
216591013732	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013733	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.1e-10
216591013734	PS00870 Chaperonins clpA/B signature 1.
216591013735	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013736	HMMPfam hit to PF02861, Clp amino terminal domain, score 1e-16
216591013737	Uncharacterized conserved protein [Function unknown]; Region: COG2127
216591013738	HMMPfam hit to PF02617, ATP-dependent Clp protease adaptor protein C, score 1.1e-49
216591013739	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
216591013740	DNA-binding site [nucleotide binding]; DNA binding site
216591013741	RNA-binding motif; other site
216591013742	HMMPfam hit to PF00313, 'Cold-shock' DNA-binding domain, score 4.2e-42
216591013743	PS00352 'Cold-shock' DNA-binding domain signature.
216591013744	Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: SufI; COG2132
216591013745	Multicopper oxidase; Region: Cu-oxidase_3; pfam07732
216591013746	Multicopper oxidase; Region: Cu-oxidase_2; pfam07731
216591013747	HMMPfam hit to PF07731, Multicopper oxidase, score 5.6e-26
216591013748	PS00080 Multicopper oxidases signature 2.
216591013749	HMMPfam hit to PF07732, Multicopper oxidase, score 1.9e-41
216591013750	1 probable transmembrane helix predicted for BCAL2733 by TMHMM2.0 at aa 13-32
216591013751	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013752	Monomeric isocitrate dehydrogenase [Energy production and conversion]; Region: Icd; COG2838
216591013753	Monomeric isocitrate dehydrogenase; Region: IDH; cl15383
216591013754	HMMPfam hit to PF03971, Monomeric isocitrate dehydrogenase, score 0
216591013755	isocitrate dehydrogenase; Validated; Region: PRK07362
216591013756	isocitrate dehydrogenase; Reviewed; Region: PRK07006
216591013757	HMMPfam hit to PF00180, Isocitrate/isopropylmalate dehydrogenase, score 7.4e-153
216591013758	PS00470 Isocitrate and isopropylmalate dehydrogenases signature.
216591013759	Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi); Region: PseudoU_synth; cl00130
216591013760	pseudouridine synthase; Region: TIGR00093
216591013761	active site
216591013762	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 3.1e-23
216591013763	PS01149 Rsu family of pseudouridine synthase signature.
216591013764	Uncharacterized ACR, COG1430; Region: DUF192; pfam02643
216591013765	HMMPfam hit to PF02643, Uncharacterized ACR, COG1430, score 3.7e-39
216591013766	elongation factor G; Reviewed; Region: PRK00007
216591013767	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
216591013768	G1 box; other site
216591013769	putative GEF interaction site [polypeptide binding]; other site
216591013770	GTP/Mg2+ binding site [chemical binding]; other site
216591013771	Switch I region; other site
216591013772	G2 box; other site
216591013773	G3 box; other site
216591013774	Switch II region; other site
216591013775	G4 box; other site
216591013776	G5 box; other site
216591013777	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
216591013778	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
216591013779	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
216591013780	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 1.5e-109
216591013781	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013782	PS00301 GTP-binding elongation factors signature.
216591013783	HMMPfam hit to PF03144, Elongation factor Tu domain, score 7.2e-21
216591013784	HMMPfam hit to PF03764, Elongation factor G, domain IV, score 1.5e-68
216591013785	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 2.9e-48
216591013786	High-affinity nickel permease [Inorganic ion transport and metabolism]; Region: HoxN; COG3376
216591013787	8 probable transmembrane helices predicted for BCAL2740 by TMHMM2.0 at aa 21-43, 48-65, 91-113, 128-150, 197-219, 224-246, 267-289 and 314-336
216591013788	HMMPfam hit to PF03824, High-affinity nickel-transport protein, score 1.7e-103
216591013789	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013790	1 probable transmembrane helix predicted for BCAL2741 by TMHMM2.0 at aa 10-32
216591013791	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591013792	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591013793	active site
216591013794	catalytic tetrad [active]
216591013795	HMMPfam hit to PF00248, Aldo/keto reductase family, score 9.5e-66
216591013796	Transcriptional regulators [Transcription]; Region: PhnF; COG2188
216591013797	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591013798	DNA-binding site [nucleotide binding]; DNA binding site
216591013799	UTRA domain; Region: UTRA; pfam07702
216591013800	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 1.4e-19
216591013801	PS00043 Bacterial regulatory proteins, gntR family signature.
216591013802	Predicted helix-turn-helix motif with score 1092.000, SD 2.91 at aa 46-67, sequence PSERVLSEALGVSRITARKAIA
216591013803	HMMPfam hit to PF07702, UTRA domain, score 1.5e-48
216591013804	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591013805	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591013806	HMMPfam hit to PF02515, CoA-transferase family III, score 1.8e-09
216591013807	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
216591013808	MerR family regulatory protein; Region: MerR; pfam00376
216591013809	Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A; Region: CS_ACL-C_CCL; cl00416
216591013810	Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate...; Region: citrate_synt_like_2; cd06102
216591013811	Citrate synthase [Energy production and conversion]; Region: GltA; COG0372
216591013812	dimer interface [polypeptide binding]; other site
216591013813	active site
216591013814	oxalacetate/citrate binding site [chemical binding]; other site
216591013815	citrylCoA binding site [chemical binding]; other site
216591013816	coenzyme A binding site [chemical binding]; other site
216591013817	catalytic triad [active]
216591013818	Predicted helix-turn-helix motif with score 1732.000, SD 5.09 at aa 4-25, sequence LSAQEAAGMLGVSVSTLYAYVS
216591013819	HMMPfam hit to PF00376, MerR family regulatory protein, score 7.3e-09
216591013820	HMMPfam hit to PF00285, Citrate synthase, score 6.2e-14
216591013821	Protein of unknown function (DUF2917); Region: DUF2917; pfam11142
216591013822	PS00228 Tubulin-beta mRNA autoregulation signal.
216591013823	putative transporter; Provisional; Region: PRK10504
216591013824	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591013825	putative substrate translocation pore; other site
216591013826	14 probable transmembrane helices predicted for BCAL2748 by TMHMM2.0 at aa 17-39, 54-76, 83-105, 109-131, 143-165, 170-192, 205-222, 232-254, 261-283, 298-320, 333-355, 365-387, 400-422 and 437-459
216591013827	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.3e-57
216591013828	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013829	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013830	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591013831	HMMPfam hit to PF00563, EAL domain, score 4.9e-09
216591013832	tellurite resistance protein TehB; Provisional; Region: PRK11207
216591013833	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
216591013834	S-adenosylmethionine binding site [chemical binding]; other site
216591013835	HMMPfam hit to PF08241, Methyltransferase domain, score 5.3e-11
216591013836	HMMPfam hit to PF08242, Methyltransferase domain, score 4.4e-10
216591013837	2-dehydropantoate 2-reductase; Provisional; Region: PRK08229
216591013838	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
216591013839	Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546
216591013840	HMMPfam hit to PF08546, Ketopantoate reductase PanE/ApbA C ter, score 8.7e-34
216591013841	HMMPfam hit to PF02558, Ketopantoate reductase PanE/ApbA, score 5.8e-41
216591013842	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 1.1e-05
216591013843	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013844	Predicted membrane protein [Function unknown]; Region: COG4539
216591013845	5 probable transmembrane helices predicted for BCAL2752 by TMHMM2.0 at aa 35-54, 58-80, 87-106, 111-133 and 145-167
216591013846	HMMPfam hit to PF06127, Protein of unknown function (DUF962), score 1e-68
216591013847	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
216591013848	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
216591013849	ligand binding site [chemical binding]; other site
216591013850	flexible hinge region; other site
216591013851	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
216591013852	putative switch regulator; other site
216591013853	non-specific DNA interactions [nucleotide binding]; other site
216591013854	DNA binding site [nucleotide binding]
216591013855	sequence specific DNA binding site [nucleotide binding]; other site
216591013856	putative cAMP binding site [chemical binding]; other site
216591013857	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 2.6e-25
216591013858	Predicted helix-turn-helix motif with score 1405.000, SD 3.97 at aa 180-201, sequence LSQETLASMLSLTRQTTNQLLK
216591013859	Chromate transport protein ChrA [Inorganic ion transport and metabolism]; Region: ChrA; COG2059
216591013860	chromate transporter, chromate ion transporter (CHR) family; Region: 2A51; TIGR00937
216591013861	Chromate transporter; Region: Chromate_transp; pfam02417
216591013862	HMMPfam hit to PF02417, Chromate transporter, score 3.8e-17
216591013863	10 probable transmembrane helices predicted for BCAL2754 by TMHMM2.0 at aa 15-37, 83-105, 120-139, 160-182, 202-224, 236-258, 268-290, 299-321, 336-358 and 378-400
216591013864	HMMPfam hit to PF02417, Chromate transporter, score 5.7e-08
216591013865	putative transposase OrfB; Reviewed; Region: PHA02517
216591013866	Integrase core domain; Region: rve; pfam00665
216591013867	Integrase core domain; Region: rve_3; pfam13683
216591013868	HMMPfam hit to PF00665, Integrase core domain, score 1.1e-35
216591013869	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591013870	superoxide dismutase; Provisional; Region: PRK10543
216591013871	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
216591013872	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
216591013873	HMMPfam hit to PF02777, Iron/manganese superoxide dismutases, C-term, score 1.9e-72
216591013874	PS00088 Manganese and iron superoxide dismutases signature.
216591013875	HMMPfam hit to PF00081, Iron/manganese superoxide dismutases, alpha-, score 1.9e-49
216591013876	exodeoxyribonuclease VII large subunit; Reviewed; Region: xseA; PRK00286
216591013877	ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF; cd04489
216591013878	generic binding surface II; other site
216591013879	generic binding surface I; other site
216591013880	HMMPfam hit to PF02601, Exonuclease VII, large subunit, score 1.7e-41
216591013881	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 5.9e-13
216591013882	tetraacyldisaccharide 4'-kinase; Provisional; Region: PRK01906
216591013883	tetraacyldisaccharide 4'-kinase; Reviewed; Region: lpxK; PRK00652
216591013884	HMMPfam hit to PF02606, Tetraacyldisaccharide-1-P 4'-kinase, score 3.6e-70
216591013885	Uncharacterized conserved protein [Function unknown]; Region: COG2835
216591013886	HMMPfam hit to PF03966, Trm112p-like protein, score 2.5e-26
216591013887	3-deoxy-manno-octulosonate cytidylyltransferase; Provisional; Region: PRK05450
216591013888	CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517
216591013889	Ligand binding site; other site
216591013890	oligomer interface; other site
216591013891	HMMPfam hit to PF02348, Cytidylyltransferase, score 4e-71
216591013892	adenylate kinase; Reviewed; Region: adk; PRK00279
216591013893	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
216591013894	AMP-binding site [chemical binding]; other site
216591013895	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
216591013896	HMMPfam hit to PF00406, Adenylate kinase, score 1.5e-92
216591013897	PS00113 Adenylate kinase signature.
216591013898	HMMPfam hit to PF05191, Adenylate kinase, active site lid, score 6.7e-22
216591013899	Uncharacterized conserved protein [Function unknown]; Region: COG2912
216591013900	Transglutaminase-like superfamily; Region: Transglut_core2; pfam13369
216591013901	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591013902	Uncharacterized membrane protein, putative virulence factor [General function prediction only]; Region: MviN; COG0728
216591013903	MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_MurJ_like; cd13123
216591013904	10 probable transmembrane helices predicted for BCAL2764 by TMHMM2.0 at aa 91-113, 128-150, 157-179, 184-203, 319-341, 356-378, 390-409, 414-433, 446-468 and 483-505
216591013905	PS00962 Ribosomal protein S2 signature 1.
216591013906	HMMPfam hit to PF03023, MviN-like protein, score 1.3e-153
216591013907	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591013908	30S ribosomal protein S20; Reviewed; Region: rpsT; PRK00239
216591013909	HMMPfam hit to PF01649, Ribosomal protein S20, score 3.5e-28
216591013910	Protein of unknown function (DUF3579); Region: DUF3579; pfam12112
216591013911	ornithine carbamoyltransferase; Provisional; Region: PRK00779
216591013912	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
216591013913	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
216591013914	HMMPfam hit to PF02729, Aspartate/ornithine carbamoyltransferase, ca, score 8.3e-65
216591013915	PS00097 Aspartate and ornithine carbamoyltransferases signature.
216591013916	HMMPfam hit to PF00185, Aspartate/ornithine carbamoyltransferase, As, score 1e-52
216591013917	UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK00046
216591013918	FAD binding domain; Region: FAD_binding_4; pfam01565
216591013919	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
216591013920	HMMPfam hit to PF02873, UDP-N-acetylenolpyruvoylglucosamine red, score 2.6e-45
216591013921	HMMPfam hit to PF01565, FAD binding domain, score 7.3e-18
216591013922	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1666
216591013923	Proteins similar to Escherichia coli YajQ; Region: YajQ_like; cd11740
216591013924	HMMPfam hit to PF04461, Protein of unknown function (DUF520), score 2.3e-70
216591013925	putative glycerol-3-phosphate acyltransferase PlsY; Provisional; Region: PRK00220
216591013926	HMMPfam hit to PF02660, Domain of unknown function DUF, score 9.4e-61
216591013927	4 probable transmembrane helices predicted for BCAL2770 by TMHMM2.0 at aa 7-29, 79-100, 113-135 and 155-177
216591013928	This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS)...; Region: YbaK_deacylase; cd00002
216591013929	putative deacylase active site [active]
216591013930	HMMPfam hit to PF04073, YbaK / prolyl-tRNA synthetases associated do, score 7e-39
216591013931	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591013932	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187
216591013933	acyl-activating enzyme (AAE) consensus motif; other site
216591013934	AMP binding site [chemical binding]; other site
216591013935	active site
216591013936	CoA binding site [chemical binding]; other site
216591013937	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.7e-117
216591013938	PS00904 Protein prenyltransferases alpha subunit repeat signature.
216591013939	PS00455 Putative AMP-binding domain signature.
216591013940	site-specific tyrosine recombinase XerD; Reviewed; Region: xerD; PRK00283
216591013941	XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination...; Region: INT_XerDC; cd00798
216591013942	active site
216591013943	Int/Topo IB signature motif; other site
216591013944	HMMPfam hit to PF00589, Phage integrase family, score 1.3e-55
216591013945	Predicted helix-turn-helix motif with score 1027.000, SD 2.68 at aa 248-269, sequence RHAQQADVRAHLSPHTLRHAFA
216591013946	HMMPfam hit to PF02899, Phage integrase, N-terminal SAM-like, score 7.6e-19
216591013947	Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]; Region: Ada; COG0350
216591013948	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
216591013949	DNA binding site [nucleotide binding]
216591013950	active site
216591013951	HMMPfam hit to PF01035, 6-O-methylguanine DNA methyltransferase, score 2.8e-33
216591013952	PS00374 Methylated-DNA--protein-cysteine methyltransferase active site.
216591013953	Predicted helix-turn-helix motif with score 1075.000, SD 2.85 at aa 88-109, sequence LTYGQVAKRIGSAPRAVGQACG
216591013954	epoxyqueuosine reductase; Region: TIGR00276
216591013955	Domain of unknown function (DUF1730); Region: DUF1730; pfam08331
216591013956	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.00047
216591013957	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591013958	HMMPfam hit to PF08331, Domain of unknown function (DUF1730), score 2.6e-26
216591013959	Uncharacterized P-loop hydrolase UPF0079; Region: UPF0079; cl00520
216591013960	HMMPfam hit to PF02367, Uncharacterised P-loop hydrolase UPF0079, score 1.7e-36
216591013961	PS00017 ATP/GTP-binding site motif A (P-loop).
216591013962	AMIN domain; Region: AMIN; pfam11741
216591013963	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
216591013964	active site
216591013965	metal binding site [ion binding]; metal-binding site
216591013966	HMMPfam hit to PF01520, N-acetylmuramoyl-L-alanine amidase, score 1.1e-85
216591013967	O-acetylserine/cysteine export protein; Provisional; Region: PRK11453
216591013968	EamA-like transporter family; Region: EamA; pfam00892
216591013969	10 probable transmembrane helices predicted for BCAL2778 by TMHMM2.0 at aa 7-29, 34-51, 60-82, 87-109, 116-133, 137-159, 168-190, 205-227, 234-256 and 261-283
216591013970	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 5e-17
216591013971	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2.6e-13
216591013972	Pirin-related protein [General function prediction only]; Region: COG1741
216591013973	Pirin; Region: Pirin; pfam02678
216591013974	Pirin C-terminal cupin domain; Region: Pirin_C; pfam05726
216591013975	HMMPfam hit to PF02678, Pirin, score 4.8e-58
216591013976	HMMPfam hit to PF05726, Pirin C-terminal cupin domain, score 2.1e-29
216591013977	Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]; Region: COG3118
216591013978	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
216591013979	catalytic residues [active]
216591013980	HMMPfam hit to PF00085, Thioredoxin, score 1.7e-26
216591013981	PS00194 Thioredoxin family active site.
216591013982	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.0024
216591013983	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]; Region: COG1179
216591013984	Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like...; Region: YgdL_like; cd00755
216591013985	putative ATP binding site [chemical binding]; other site
216591013986	putative substrate interface [chemical binding]; other site
216591013987	HMMPfam hit to PF00899, ThiF family, score 5.7e-50
216591013988	pyridoxamine-phosphate oxidase; Region: pdxH; TIGR00558
216591013989	Pyridoxamine 5'-phosphate oxidase; Region: Pyridox_oxidase; pfam01243
216591013990	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; Region: PNPOx_C; pfam10590
216591013991	HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase, score 1.7e-35
216591013992	PS01064 Pyridoxamine 5'-phosphate oxidase signature.
216591013993	Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]; Region: Cfa; COG2230
216591013994	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591013995	S-adenosylmethionine binding site [chemical binding]; other site
216591013996	HMMPfam hit to PF02353, Cyclopropane-fatty-acyl-phospholipid, score 3.7e-131
216591013997	HMMPfam hit to PF08241, Methyltransferase domain, score 2e-11
216591013998	HMMPfam hit to PF08242, Methyltransferase domain, score 1.3e-11
216591013999	Protein of unknown function DUF72; Region: DUF72; pfam01904
216591014000	HMMPfam hit to PF01904, Protein of unknown function DUF72, score 8e-24
216591014001	methionine sulfoxide reductase A; Provisional; Region: PRK14054
216591014002	HMMPfam hit to PF01625, Peptide methionine sulfoxide reductase, score 3.9e-83
216591014003	56kDa selenium binding protein (SBP56); Region: SBP56; pfam05694
216591014004	HMMPfam hit to PF05694, 56kDa selenium binding protein (SBP56), score 1.8e-206
216591014005	5 probable transmembrane helices predicted for BCAL2787 by TMHMM2.0 at aa 17-39, 49-71, 92-114, 134-156 and 169-191
216591014006	Flavin reductase like domain; Region: Flavin_Reduct; smart00903
216591014007	HMMPfam hit to PF01613, Flavin reductase like domain, score 1.3e-54
216591014008	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591014009	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591014010	putative DNA binding site [nucleotide binding]; other site
216591014011	putative Zn2+ binding site [ion binding]; other site
216591014012	AsnC family; Region: AsnC_trans_reg; pfam01037
216591014013	HMMPfam hit to PF01037, AsnC family, score 1.1e-26
216591014014	arylformamidase; Region: trp_arylform; TIGR03035
216591014015	HMMPfam hit to PF04199, Putative cyclase, score 2.2e-54
216591014016	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591014017	kynureninase; Region: kynureninase; TIGR01814
216591014018	Kynureninase [Amino acid transport and metabolism]; Region: COG3844
216591014019	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591014020	catalytic residue [active]
216591014021	HMMPfam hit to PF00266, Aminotransferase class-V, score 9.3e-08
216591014022	tryptophan 2,3-dioxygenase; Region: trp_2_3_diox; TIGR03036
216591014023	HMMPfam hit to PF03301, Tryptophan 2,3-dioxygenase, score 1.6e-101
216591014024	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591014025	benzoate transport; Region: 2A0115; TIGR00895
216591014026	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591014027	putative substrate translocation pore; other site
216591014028	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591014029	putative substrate translocation pore; other site
216591014030	HMMPfam hit to PF00083, Sugar (and other) transporter, score 2.4e-07
216591014031	12 probable transmembrane helices predicted for BCAL2793 by TMHMM2.0 at aa 40-62, 75-97, 106-125, 130-152, 165-187, 192-214, 276-298, 313-332, 339-358, 368-390, 402-424 and 428-450
216591014032	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.7e-44
216591014033	PS00216 Sugar transport proteins signature 1.
216591014034	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014035	2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522
216591014036	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
216591014037	Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546
216591014038	HMMPfam hit to PF08546, Ketopantoate reductase PanE/ApbA C terminal, score 7.6e-50
216591014039	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014040	HMMPfam hit to PF02558, Ketopantoate reductase PanE/ApbA, score 2.8e-49
216591014041	NAD-dependent aldehyde dehydrogenases [Energy production and conversion]; Region: PutA; COG1012
216591014042	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
216591014043	NAD(P) binding site [chemical binding]; other site
216591014044	catalytic residues [active]
216591014045	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.9e-179
216591014046	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591014047	benzoylformate decarboxylase; Reviewed; Region: PRK07092
216591014048	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591014049	PYR/PP interface [polypeptide binding]; other site
216591014050	dimer interface [polypeptide binding]; other site
216591014051	TPP binding site [chemical binding]; other site
216591014052	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591014053	Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of...; Region: TPP_BFDC; cd02002
216591014054	TPP-binding site [chemical binding]; other site
216591014055	dimer interface [polypeptide binding]; other site
216591014056	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 6.1e-33
216591014057	PS00187 Thiamine pyrophosphate enzymes signature.
216591014058	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 3.3e-07
216591014059	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 3.3e-50
216591014060	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591014061	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591014062	The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold; Region: PBP2_GbpR; cd08435
216591014063	putative dimerization interface [polypeptide binding]; other site
216591014064	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3e-25
216591014065	Predicted helix-turn-helix motif with score 1976.000, SD 5.92 at aa 18-39, sequence GSLGRAADALHVTQPALSRILK
216591014066	PS00044 Bacterial regulatory proteins, lysR family signature.
216591014067	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.3e-31
216591014068	Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246
216591014069	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
216591014070	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
216591014071	HMMPfam hit to PF01232, Mannitol dehydrogenase Rossmann domain, score 4e-50
216591014072	HMMPfam hit to PF08125, Mannitol dehydrogenase C-terminal domai, score 3.2e-89
216591014073	Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases; Region: FGGY_D-XK_EcXK-like; cd07808
216591014074	N- and C-terminal domain interface [polypeptide binding]; other site
216591014075	D-xylulose kinase; Region: XylB; TIGR01312
216591014076	active site
216591014077	MgATP binding site [chemical binding]; other site
216591014078	catalytic site [active]
216591014079	metal binding site [ion binding]; metal-binding site
216591014080	xylulose binding site [chemical binding]; other site
216591014081	homodimer interface [polypeptide binding]; other site
216591014082	HMMPfam hit to PF00370, FGGY family of carbohydrate kinases, N-termi, score 2.2e-92
216591014083	PS00933 FGGY family of carbohydrate kinases signature 1.
216591014084	HMMPfam hit to PF02782, FGGY family of carbohydrate kinases, C-termi, score 3.4e-58
216591014085	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014086	PS00445 FGGY family of carbohydrate kinases signature 2.
216591014087	Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]; Region: DeoR; COG2390
216591014088	Putative sugar-binding domain; Region: Sugar-bind; pfam04198
216591014089	Predicted helix-turn-helix motif with score 1214.000, SD 3.32 at aa 23-44, sequence DTQNEIAEKLQVSRPVAQRLVA
216591014090	HMMPfam hit to PF04198, Putative sugar-binding domain, score 6.6e-65
216591014091	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591014092	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591014093	putative substrate translocation pore; other site
216591014094	12 probable transmembrane helices predicted for BCAL2801 by TMHMM2.0 at aa 13-35, 50-72, 84-106, 111-128, 140-162, 166-188, 217-239, 249-271, 278-300, 304-326, 338-357 and 361-380
216591014095	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5e-39
216591014096	Beta-lactamase; Region: Beta-lactamase; pfam00144
216591014097	Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680
216591014098	HMMPfam hit to PF00144, Beta-lactamase, score 4.1e-74
216591014099	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591014100	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591014101	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_7; cd08476
216591014102	putative effector binding pocket; other site
216591014103	putative dimerization interface [polypeptide binding]; other site
216591014104	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.5e-16
216591014105	Predicted helix-turn-helix motif with score 1127.000, SD 3.03 at aa 17-38, sequence RSFVAAGRALGLSASAIGKRIA
216591014106	PS00044 Bacterial regulatory proteins, lysR family signature.
216591014107	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.9e-56
216591014108	maltose/maltodextrin transporter ATP-binding protein; Provisional; Region: PRK11000
216591014109	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
216591014110	Walker A/P-loop; other site
216591014111	ATP binding site [chemical binding]; other site
216591014112	Q-loop/lid; other site
216591014113	ABC transporter signature motif; other site
216591014114	Walker B; other site
216591014115	D-loop; other site
216591014116	H-loop/switch region; other site
216591014117	TOBE domain; Region: TOBE; pfam03459
216591014118	TOBE domain; Region: TOBE_2; pfam08402
216591014119	HMMPfam hit to PF08402, TOBE domain, score 1e-09
216591014120	HMMPfam hit to PF03459, TOBE domain, score 1.1e-09
216591014121	HMMPfam hit to PF00005, ABC transporter, score 4.4e-57
216591014122	PS00211 ABC transporters family signature.
216591014123	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014124	Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637
216591014125	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 4e-24
216591014126	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
216591014127	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591014128	dimer interface [polypeptide binding]; other site
216591014129	conserved gate region; other site
216591014130	putative PBP binding loops; other site
216591014131	ABC-ATPase subunit interface; other site
216591014132	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 9.4e-15
216591014133	6 probable transmembrane helices predicted for BCAL2806 by TMHMM2.0 at aa 21-43, 76-98, 115-137, 152-171, 192-214 and 246-268
216591014134	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591014135	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591014136	dimer interface [polypeptide binding]; other site
216591014137	conserved gate region; other site
216591014138	putative PBP binding loops; other site
216591014139	ABC-ATPase subunit interface; other site
216591014140	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.1e-14
216591014141	6 probable transmembrane helices predicted for BCAL2807 by TMHMM2.0 at aa 35-57, 95-117, 124-146, 176-198, 234-256 and 282-304
216591014142	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591014143	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
216591014144	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
216591014145	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 1.6e-44
216591014146	1 probable transmembrane helix predicted for BCAL2808 by TMHMM2.0 at aa 13-35
216591014147	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014148	Tagatose 6 phosphate kinase; Region: Tagatose_6_P_K; pfam08013
216591014149	HMMPfam hit to PF08013, Tagatose 6 phosphate kinase, score 7.9e-229
216591014150	Predicted helix-turn-helix motif with score 1112.000, SD 2.97 at aa 360-381, sequence ETAQRLARQFSYSDRIRYYWLQ
216591014151	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
216591014152	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591014153	substrate binding site [chemical binding]; other site
216591014154	ATP binding site [chemical binding]; other site
216591014155	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 2.2e-38
216591014156	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014157	sorbitol dehydrogenase; Provisional; Region: PRK07067
216591014158	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591014159	NAD(P) binding site [chemical binding]; other site
216591014160	active site
216591014161	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.5e-32
216591014162	PS00061 Short-chain dehydrogenases/reductases family signature.
216591014163	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591014164	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
216591014165	metal binding site 2 [ion binding]; metal-binding site
216591014166	putative DNA binding helix; other site
216591014167	metal binding site 1 [ion binding]; metal-binding site
216591014168	dimer interface [polypeptide binding]; other site
216591014169	structural Zn2+ binding site [ion binding]; other site
216591014170	HMMPfam hit to PF01475, Ferric uptake regulator family, score 2.3e-05
216591014171	Metal binding protein TroA_b.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding...; Region: TroA_b; cd01020
216591014172	Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297
216591014173	metal binding site [ion binding]; metal-binding site
216591014174	HMMPfam hit to PF01297, Periplasmic solute binding protein family, score 7.3e-14
216591014175	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
216591014176	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
216591014177	HMMPfam hit to PF00005, ABC transporter, score 9.3e-47
216591014178	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014179	PS00211 ABC transporters family signature.
216591014180	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cl00462
216591014181	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
216591014182	ABC-ATPase subunit  interface; other site
216591014183	dimer interface [polypeptide binding]; other site
216591014184	HMMPfam hit to PF00950, ABC 3 transport family, score 6.2e-37
216591014185	7 probable transmembrane helices predicted for BCAL2815 by TMHMM2.0 at aa 5-24, 37-59, 79-101, 122-144, 166-188, 208-230 and 234-251
216591014186	Predicted helix-turn-helix motif with score 1107.000, SD 2.96 at aa 147-168, sequence SLQPELAEAKGVSLRTVSMLFL
216591014187	S-formylglutathione hydrolase; Region: PLN02442
216591014188	S-formylglutathione hydrolase; Region: fghA_ester_D; TIGR02821
216591014189	HMMPfam hit to PF00756, Putative esterase, score 1e-80
216591014190	Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]; Region: AdhC; COG1062
216591014191	class III alcohol dehydrogenases; Region: alcohol_DH_class_III; cd08300
216591014192	substrate binding site [chemical binding]; other site
216591014193	catalytic Zn binding site [ion binding]; other site
216591014194	NAD binding site [chemical binding]; other site
216591014195	structural Zn binding site [ion binding]; other site
216591014196	dimer interface [polypeptide binding]; other site
216591014197	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.9e-38
216591014198	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 5.1e-34
216591014199	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591014200	Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]; Region: XylB; COG1070
216591014201	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
216591014202	nucleotide binding site [chemical binding]; other site
216591014203	HMMPfam hit to PF02782, FGGY family of carbohydrate kinases, C-termi, score 6.2e-18
216591014204	HMMPfam hit to PF00370, FGGY family of carbohydrate kinases, N-termi, score 1.8e-59
216591014205	xanthine permease; Region: pbuX; TIGR03173
216591014206	HMMPfam hit to PF00860, Permease family, score 5.1e-139
216591014207	11 probable transmembrane helices predicted for BCAL2819 by TMHMM2.0 at aa 46-68, 75-97, 127-149, 156-178, 193-210, 215-237, 268-290, 343-365, 370-389, 402-424 and 434-456
216591014208	HMMPfam hit to PF00916, Sulfate transporter family, score 0.0039
216591014209	PS01116 Xanthine/uracil permeases family signature.
216591014210	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591014211	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.2e-50
216591014212	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.5e-46
216591014213	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014214	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915
216591014215	Protein export membrane protein; Region: SecD_SecF; cl14618
216591014216	Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456
216591014217	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591014218	12 probable transmembrane helices predicted for BCAL2821 by TMHMM2.0 at aa 9-31, 340-359, 366-388, 392-414, 438-460, 470-492, 540-559, 869-891, 898-920, 925-947, 968-990 and 1000-1022
216591014219	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014220	multidrug efflux system transporter AcrA; Provisional; Region: PRK15030
216591014221	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591014222	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591014223	HMMPfam hit to PF00529, HlyD family secretion protein, score 5.1e-59
216591014224	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014225	DNA-binding transcriptional repressor AcrR; Provisional; Region: PRK10668
216591014226	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591014227	MAATS-type transcriptional repressor, C-terminal region; Region: TetR_C_2; pfam08361
216591014228	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 9.6e-22
216591014229	PS01081 Bacterial regulatory proteins, tetR family signature.
216591014230	Predicted helix-turn-helix motif with score 2122.000, SD 6.41 at aa 32-53, sequence TSLADIAQHAGVTRGAIYWHFA
216591014231	HMMPfam hit to PF08361, MAATS-type transcriptional repressor, C-term, score 6.1e-19
216591014232	Isochorismatase family; Region: Isochorismatase; pfam00857
216591014233	Nicotinamidase_ related amidohydrolases.  Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia; Region: nicotinamidase_related; cd01014
216591014234	catalytic triad [active]
216591014235	conserved cis-peptide bond; other site
216591014236	HMMPfam hit to PF00857, Isochorismatase family, score 6.7e-10
216591014237	transcriptional activator FtrA; Provisional; Region: ftrA; PRK09393
216591014238	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591014239	conserved cys residue [active]
216591014240	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591014241	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591014242	HMMPfam hit to PF01965, DJ-1/PfpI family, score 5.9e-13
216591014243	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.4e-06
216591014244	Predicted helix-turn-helix motif with score 1271.000, SD 3.52 at aa 239-260, sequence HSVDSLAERVLMSRRTFTRHFR
216591014245	PS00041 Bacterial regulatory proteins, araC family signature.
216591014246	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 3.7e-07
216591014247	Predicted helix-turn-helix motif with score 1271.000, SD 3.52 at aa 304-325, sequence SLRQHFAGALGTSPSAYRREFR
216591014248	START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643
216591014249	hydrophobic ligand binding site; other site
216591014250	1 probable transmembrane helix predicted for BCAL2826a by TMHMM2.0 at aa 212-234
216591014251	HMMPfam hit to PF06240, Carbon monoxide dehydrogenase subunit G (Cox, score 8.4e-06
216591014252	Domain of unknown function (DUF427); Region: DUF427; pfam04248
216591014253	HMMPfam hit to PF04248, Domain of unknown function (DUF427), score 4.3e-26
216591014254	Carboxypeptidase regulatory-like domain; Region: CarboxypepD_reg; pfam13620
216591014255	1 probable transmembrane helix predicted for BCAL2828 by TMHMM2.0 at aa 16-38
216591014256	periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037
216591014257	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
216591014258	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591014259	protein binding site [polypeptide binding]; other site
216591014260	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591014261	protein binding site [polypeptide binding]; other site
216591014262	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 3.9e-11
216591014263	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 7.8e-15
216591014264	HMMPfam hit to PF00089, Trypsin, score 8.7e-17
216591014265	1 probable transmembrane helix predicted for BCAL2829 by TMHMM2.0 at aa 5-27
216591014266	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591014267	dimer interface [polypeptide binding]; other site
216591014268	phosphorylation site [posttranslational modification]
216591014269	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591014270	ATP binding site [chemical binding]; other site
216591014271	Mg2+ binding site [ion binding]; other site
216591014272	G-X-G motif; other site
216591014273	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.9e-32
216591014274	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 2.5e-15
216591014275	HMMPfam hit to PF00672, HAMP domain, score 1.8e-05
216591014276	1 probable transmembrane helix predicted for BCAL2830 by TMHMM2.0 at aa 7-29
216591014277	DNA-binding transcriptional regulator BasR; Provisional; Region: PRK10643
216591014278	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591014279	active site
216591014280	phosphorylation site [posttranslational modification]
216591014281	intermolecular recognition site; other site
216591014282	dimerization interface [polypeptide binding]; other site
216591014283	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591014284	DNA binding site [nucleotide binding]
216591014285	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 4.3e-22
216591014286	HMMPfam hit to PF00072, Response regulator receiver domain, score 5.4e-42
216591014287	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]; Region: DacB; COG2027
216591014288	HMMPfam hit to PF02113, D-Ala-D-Ala carboxypeptidase 3 (S13) fa, score 4.8e-74
216591014289	Sterol desaturase [Lipid metabolism]; Region: ERG3; COG3000
216591014290	Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; pfam04116
216591014291	5 probable transmembrane helices predicted for BCAL2833 by TMHMM2.0 at aa 7-29, 49-71, 83-100, 133-152 and 157-176
216591014292	Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its...; Region: Triacylglycerol_lipase_like; cd01847
216591014293	active site
216591014294	catalytic triad [active]
216591014295	oxyanion hole [active]
216591014296	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014297	Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]; Region: SUA5; COG0009
216591014298	Putative GTP-binding controlling metal-binding; Region: SUA5; pfam03481
216591014299	HMMPfam hit to PF03481, SUA5 domain, score 1.2e-10
216591014300	HMMPfam hit to PF01300, yrdC domain, score 1e-50
216591014301	PS01147 SUA5/yciO/yrdC family signature.
216591014302	phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed; Region: PRK06019
216591014303	ATP-grasp domain; Region: ATP-grasp; pfam02222
216591014304	HMMPfam hit to PF02222, ATP-grasp domain, score 6.5e-67
216591014305	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, ATP-g, score 0.002
216591014306	AIR carboxylase; Region: AIRC; pfam00731
216591014307	HMMPfam hit to PF00731, AIR carboxylase, score 4.8e-81
216591014308	phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed; Region: PRK09362
216591014309	non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase; Region: SAICAR_synt_Sc; cd01414
216591014310	ATP binding site [chemical binding]; other site
216591014311	active site
216591014312	substrate binding site [chemical binding]; other site
216591014313	HMMPfam hit to PF01259, SAICAR synthetase, score 1.8e-127
216591014314	PS01058 SAICAR synthetase signature 2.
216591014315	fructose-bisphosphate aldolase; Provisional; Region: PRK09197
216591014316	Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1; Region: TBP_aldolase_IIB; cd00947
216591014317	intersubunit interface [polypeptide binding]; other site
216591014318	active site
216591014319	zinc binding site [ion binding]; other site
216591014320	Na+ binding site [ion binding]; other site
216591014321	HMMPfam hit to PF01116, Fructose-bisphosphate aldolase class-II, score 1.6e-167
216591014322	PS00806 Fructose-bisphosphate aldolase class-II signature 2.
216591014323	PS00602 Fructose-bisphosphate aldolase class-II signature 1.
216591014324	pyruvate kinase; Provisional; Region: PRK05826
216591014325	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl17342
216591014326	domain interfaces; other site
216591014327	active site
216591014328	HMMPfam hit to PF02887, Pyruvate kinase, alpha/beta domain, score 5.5e-32
216591014329	HMMPfam hit to PF00224, Pyruvate kinase, barrel domain, score 2.9e-146
216591014330	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014331	Phosphoglycerate kinase; Region: PGK; pfam00162
216591014332	Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cd00318
216591014333	substrate binding site [chemical binding]; other site
216591014334	hinge regions; other site
216591014335	ADP binding site [chemical binding]; other site
216591014336	catalytic site [active]
216591014337	HMMPfam hit to PF00162, Phosphoglycerate kinase, score 9.4e-145
216591014338	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014339	PS00111 Phosphoglycerate kinase signature.
216591014340	Branched-chain amino acid transport protein (AzlD); Region: AzlD; pfam05437
216591014341	3 probable transmembrane helices predicted for BCAL2842 by TMHMM2.0 at aa 6-25, 46-68 and 83-105
216591014342	HMMPfam hit to PF05437, Branched-chain amino acid transport protein, score 1.3e-30
216591014343	AzlC protein; Region: AzlC; cl00570
216591014344	6 probable transmembrane helices predicted for BCAL2843 by TMHMM2.0 at aa 20-38, 53-75, 88-110, 147-169, 176-198 and 213-232
216591014345	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014346	HMMPfam hit to PF03591, AzlC protein, score 1.1e-47
216591014347	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
216591014348	BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids  leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and...; Region: BCAT_beta_family; cd01557
216591014349	homodimer interface [polypeptide binding]; other site
216591014350	substrate-cofactor binding pocket; other site
216591014351	catalytic residue [active]
216591014352	HMMPfam hit to PF01063, Aminotransferase class IV, score 3.9e-106
216591014353	PS00770 Aminotransferases class-IV signature.
216591014354	Duplicated region
216591014355	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591014356	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591014357	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591014358	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591014359	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014360	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591014361	GAF domain-containing protein [Signal transduction mechanisms]; Region: COG1956
216591014362	PS01320 Uncharacterized protein family UPF0067 signature.
216591014363	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
216591014364	active site
216591014365	HMMPfam hit to PF00557, metallopeptidase family M24, score 1.1e-84
216591014366	PS00680 Methionine aminopeptidase subfamily 1 signature.
216591014367	PS00215 Mitochondrial energy transfer proteins signature.
216591014368	Protein of unknown function (DUF3423); Region: DUF3423; pfam11903
216591014369	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591014370	sequence-specific DNA binding site [nucleotide binding]; other site
216591014371	salt bridge; other site
216591014372	Cupin domain; Region: Cupin_2; cl17218
216591014373	HMMPfam hit to PF01381, Helix-turn-helix, score 2.6e-11
216591014374	Predicted helix-turn-helix motif with score 1253.000, SD 3.45 at aa 31-52, sequence YTLDTLAARSGVSRSMISLIER
216591014375	HMMPfam hit to PF07883, Cupin domain, score 0.0031
216591014376	Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]; Region: COG1247
216591014377	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.6e-15
216591014378	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591014379	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 2.5e-06
216591014380	Cache domain; Region: Cache_1; pfam02743
216591014381	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591014382	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591014383	metal binding site [ion binding]; metal-binding site
216591014384	active site
216591014385	I-site; other site
216591014386	HMMPfam hit to PF00990, GGDEF domain, score 5.9e-75
216591014387	2 probable transmembrane helices predicted for BCAL2852 by TMHMM2.0 at aa 6-28 and 288-310
216591014388	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014389	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453
216591014390	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 6.3e-39
216591014391	5 probable transmembrane helices predicted for BCAL2853 by TMHMM2.0 at aa 5-27, 34-53, 80-102, 135-157 and 161-180
216591014392	PS00379 CDP-alcohol phosphatidyltransferases signature.
216591014393	CDS is interrupted by an IS element insertion after codon 126. Similar to Burkholderia pseudomallei (Pseudomonas pseudomallei) putative excinuclease ABC subunit C UniProt:Q63SA4 (EMBL:BX571965) (745 aa) fasta scores: E()=9e-108, 78.331% id in 743 aa
216591014394	HMMPfam hit to PF08459, UvrC Helix-hairpin-helix N-terminal, score 6.3e-78
216591014395	HMMPfam hit to PF02151, UvrB/uvrC motif, score 1.2e-07
216591014396	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591014397	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591014398	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591014399	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591014400	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014401	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591014402	HMMPfam hit to PF01541, GIY-YIG catalytic domain, score 3.9e-28
216591014403	Uncharacterized protein conserved in bacteria (DUF2331); Region: DUF2331; pfam10093
216591014404	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4394
216591014405	elongation factor P; Validated; Region: PRK00529
216591014406	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
216591014407	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
216591014408	RNA binding site [nucleotide binding]; other site
216591014409	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
216591014410	RNA binding site [nucleotide binding]; other site
216591014411	HMMPfam hit to PF08207, Elongation factor P (EF-P) KOW-like domain, score 3.1e-05
216591014412	HMMPfam hit to PF01132, Elongation factor P (EF-P) OB domain, score 2.4e-12
216591014413	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
216591014414	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591014415	active site
216591014416	phosphorylation site [posttranslational modification]
216591014417	intermolecular recognition site; other site
216591014418	dimerization interface [polypeptide binding]; other site
216591014419	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591014420	Walker A motif; other site
216591014421	ATP binding site [chemical binding]; other site
216591014422	Walker B motif; other site
216591014423	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591014424	HMMPfam hit to PF00072, Response regulator receiver domain, score 7e-34
216591014425	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 4.1e-69
216591014426	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 1.6e-12
216591014427	Predicted helix-turn-helix motif with score 1795.000, SD 5.30 at aa 435-456, sequence GTRHRAATLLGISPKTLYNKLQ
216591014428	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
216591014429	beta-hexosaminidase; Provisional; Region: PRK05337
216591014430	HMMPfam hit to PF00933, Glycosyl hydrolase family 3 N terminal, score 2.6e-32
216591014431	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591014432	4'-phosphopantetheinyl transferase; Provisional; Region: acpS; PRK00070
216591014433	HMMPfam hit to PF01648, 4'-phosphopantetheinyl transferase superfami, score 1.8e-10
216591014434	Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in...; Region: PNPsynthase; cd00003
216591014435	active site
216591014436	hydrophilic channel; other site
216591014437	dimerization interface [polypeptide binding]; other site
216591014438	catalytic residues [active]
216591014439	active site lid [active]
216591014440	HMMPfam hit to PF03740, Pyridoxal phosphate biosynthesis protein Pdx, score 6.7e-138
216591014441	DNA repair protein RecO; Reviewed; Region: recO; PRK00085
216591014442	Recombination protein O N terminal; Region: RecO_N; pfam11967
216591014443	Recombination protein O C terminal; Region: RecO_C; pfam02565
216591014444	HMMPfam hit to PF02565, Recombination protein O, score 9.7e-21
216591014445	GTPase Era; Reviewed; Region: era; PRK00089
216591014446	E. coli Ras-like protein (Era) is a multifunctional GTPase; Region: Era; cd04163
216591014447	G1 box; other site
216591014448	GTP/Mg2+ binding site [chemical binding]; other site
216591014449	Switch I region; other site
216591014450	G2 box; other site
216591014451	Switch II region; other site
216591014452	G3 box; other site
216591014453	G4 box; other site
216591014454	G5 box; other site
216591014455	KH domain; Region: KH_2; pfam07650
216591014456	HMMPfam hit to PF07650, KH domain, score 1e-25
216591014457	HMMPfam hit to PF01926, GTPase of unknown function, score 1.6e-38
216591014458	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014459	ribonuclease III; Reviewed; Region: PRK12372
216591014460	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
216591014461	dimerization interface [polypeptide binding]; other site
216591014462	active site
216591014463	metal binding site [ion binding]; metal-binding site
216591014464	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
216591014465	HMMPfam hit to PF00035, Double-stranded RNA binding motif, score 1.3e-14
216591014466	HMMPfam hit to PF00636, RNase3 domain, score 5.8e-44
216591014467	PS00517 Ribonuclease III family signature.
216591014468	signal peptidase I; Provisional; Region: PRK10861
216591014469	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
216591014470	Catalytic site [active]
216591014471	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
216591014472	PS00761 Signal peptidases I signature 3.
216591014473	HMMPfam hit to PF00717, Peptidase S24-like, score 1.7e-26
216591014474	PS00760 Signal peptidases I lysine active site.
216591014475	PS00501 Signal peptidases I serine active site.
216591014476	2 probable transmembrane helices predicted for BCAL2866 by TMHMM2.0 at aa 4-26 and 72-94
216591014477	GTP-binding protein LepA; Provisional; Region: PRK05433
216591014478	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
216591014479	G1 box; other site
216591014480	putative GEF interaction site [polypeptide binding]; other site
216591014481	GTP/Mg2+ binding site [chemical binding]; other site
216591014482	Switch I region; other site
216591014483	G2 box; other site
216591014484	G3 box; other site
216591014485	Switch II region; other site
216591014486	G4 box; other site
216591014487	G5 box; other site
216591014488	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
216591014489	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
216591014490	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
216591014491	HMMPfam hit to PF06421, GTP-binding protein LepA C-terminus, score 2.2e-79
216591014492	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 1.7e-35
216591014493	HMMPfam hit to PF03144, Elongation factor Tu domain, score 3.7e-10
216591014494	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 4.7e-70
216591014495	PS00301 GTP-binding elongation factors signature.
216591014496	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014497	Glutaredoxin-like domain (DUF836); Region: DUF836; pfam05768
216591014498	HMMPfam hit to PF05768, Glutaredoxin-like domain (DUF836), score 7e-25
216591014499	periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037
216591014500	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
216591014501	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591014502	protein binding site [polypeptide binding]; other site
216591014503	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591014504	protein binding site [polypeptide binding]; other site
216591014505	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 0.00082
216591014506	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 6.7e-08
216591014507	HMMPfam hit to PF00089, Trypsin, score 2.3e-16
216591014508	anti-sigma E factor; Provisional; Region: rseB; PRK09455
216591014509	Negative regulator of sigma E activity [Signal transduction mechanisms]; Region: RseB; COG3026
216591014510	HMMPfam hit to PF03888, MucB/RseB family, score 3.8e-28
216591014511	Anti sigma-E protein RseA, N-terminal domain; Region: RseA_N; pfam03872
216591014512	1 probable transmembrane helix predicted for BCAL2871 by TMHMM2.0 at aa 111-130
216591014513	RNA polymerase sigma factor RpoE; Region: RpoE_Sigma70; TIGR02939
216591014514	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591014515	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591014516	DNA binding residues [nucleotide binding]
216591014517	HMMPfam hit to PF04545, Sigma-70, region, score 2.4e-18
216591014518	HMMPfam hit to PF08281, Sigma-70, region, score 3.7e-20
216591014519	Predicted helix-turn-helix motif with score 1461.000, SD 4.16 at aa 156-177, sequence LSYEEIAEMMGCPIGTVRSRIF
216591014520	HMMPfam hit to PF04542, Sigma-70 region, score 2.9e-24
216591014521	PS01063 Sigma-70 factors ECF subfamily signature.
216591014522	2 probable transmembrane helices predicted for BCAL2873 by TMHMM2.0 at aa 21-43 and 47-69
216591014523	3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK07314
216591014524	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
216591014525	dimer interface [polypeptide binding]; other site
216591014526	active site
216591014527	HMMPfam hit to PF02801, Beta-ketoacyl synthase, C-terminal do, score 1.8e-60
216591014528	HMMPfam hit to PF00109, Beta-ketoacyl synthase, N-terminal do, score 6.9e-82
216591014529	PS00606 Beta-ketoacyl synthases active site.
216591014530	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014531	acyl carrier protein; Provisional; Region: acpP; PRK00982
216591014532	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 1.9e-22
216591014533	PS00012 Phosphopantetheine attachment site.
216591014534	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
216591014535	3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830
216591014536	NAD(P) binding site [chemical binding]; other site
216591014537	homotetramer interface [polypeptide binding]; other site
216591014538	homodimer interface [polypeptide binding]; other site
216591014539	active site
216591014540	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0031
216591014541	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.1e-36
216591014542	PS00061 Short-chain dehydrogenases/reductases family signature.
216591014543	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
216591014544	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
216591014545	HMMPfam hit to PF00698, Acyl transferase domain, score 5.2e-11
216591014546	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014547	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352
216591014548	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
216591014549	dimer interface [polypeptide binding]; other site
216591014550	active site
216591014551	CoA binding pocket [chemical binding]; other site
216591014552	HMMPfam hit to PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 3.1e-55
216591014553	HMMPfam hit to PF08545, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 7.8e-49
216591014554	putative phosphate acyltransferase; Provisional; Region: PRK05331
216591014555	HMMPfam hit to PF02504, Fatty acid synthesis protein, score 2.5e-138
216591014556	PS00196 Type-1 copper (blue) proteins signature.
216591014557	50S ribosomal protein L32; Validated; Region: rpmF; PRK01110
216591014558	HMMPfam hit to PF01783, Ribosomal L32p protein family, score 5e-19
216591014559	Uncharacterized ACR, COG1399; Region: DUF177; pfam02620
216591014560	HMMPfam hit to PF02620, Uncharacterized ACR, COG1399, score 4.6e-19
216591014561	Maf-like protein; Region: Maf; pfam02545
216591014562	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
216591014563	active site
216591014564	dimer interface [polypeptide binding]; other site
216591014565	HMMPfam hit to PF02545, Maf-like protein, score 1.3e-45
216591014566	Uncharacterized subfamily of the tetrapyrrole methylase family similar to ribosomal RNA small subunit methyltransferase I (RsmI); Region: RsmI_like; cd11649
216591014567	putative SAM binding site [chemical binding]; other site
216591014568	homodimer interface [polypeptide binding]; other site
216591014569	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 2.3e-05
216591014570	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
216591014571	signal peptide peptidase SppA, 36K type; Region: SppA_dom; TIGR00706
216591014572	tandem repeat interface [polypeptide binding]; other site
216591014573	oligomer interface [polypeptide binding]; other site
216591014574	active site residues [active]
216591014575	HMMPfam hit to PF01343, Peptidase family S49, score 6.7e-39
216591014576	1 probable transmembrane helix predicted for BCAL2884 by TMHMM2.0 at aa 45-67
216591014577	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cd03467
216591014578	iron-sulfur cluster [ion binding]; other site
216591014579	[2Fe-2S] cluster binding site [ion binding]; other site
216591014580	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 1.5e-10
216591014581	Predicted phosphatases [General function prediction only]; Region: Gph; COG0546
216591014582	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591014583	motif II; other site
216591014584	HAD-hyrolase-like; Region: Hydrolase_like; pfam13242
216591014585	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1e-30
216591014586	23S rRNA pseudouridylate synthase C; Provisional; Region: PRK11025
216591014587	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cl09940
216591014588	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
216591014589	active site
216591014590	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 1.9e-40
216591014591	PS01129 Rlu family of pseudouridine synthase signature.
216591014592	HMMPfam hit to PF01479, S4 domain, score 1.6e-07
216591014593	Ribonucleases G and E [Translation, ribosomal structure and biogenesis]; Region: CafA; COG1530
216591014594	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
216591014595	homodimer interface [polypeptide binding]; other site
216591014596	oligonucleotide binding site [chemical binding]; other site
216591014597	HMMPfam hit to PF00575, S1 RNA binding domain, score 2.3e-13
216591014598	molybdenum cofactor biosynthesis protein A; Reviewed; Region: moaA; PRK00164
216591014599	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591014600	FeS/SAM binding site; other site
216591014601	Molybdenum Cofactor Synthesis C; Region: Mob_synth_C; pfam06463
216591014602	HMMPfam hit to PF04055, Radical SAM superfamily, score 3.1e-38
216591014603	PS01305 moaA / nifB / pqqE family signature.
216591014604	HMMPfam hit to PF06463, Molybdenum Cofactor Synthesis C, score 2.4e-43
216591014605	molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed; Region: mobA; PRK00317
216591014606	MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503
216591014607	GTP binding site; other site
216591014608	molybdopterin biosynthesis protein MoeA; Provisional; Region: PRK10680
216591014609	MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887
216591014610	dimer interface [polypeptide binding]; other site
216591014611	putative functional site; other site
216591014612	putative MPT binding site; other site
216591014613	HMMPfam hit to PF03453, MoeA N-terminal region (domain I and II, score 9.6e-60
216591014614	HMMPfam hit to PF00994, Probable molybdopterin binding domain, score 3.8e-42
216591014615	HMMPfam hit to PF03454, MoeA C-terminal region (domain IV), score 2e-16
216591014616	2 probable transmembrane helices predicted for BCAL2892 by TMHMM2.0 at aa 16-38 and 48-70
216591014617	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014618	putative acetyltransferase; Provisional; Region: PRK03624
216591014619	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591014620	Coenzyme A binding pocket [chemical binding]; other site
216591014621	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.7e-23
216591014622	RmuC family; Region: RmuC; pfam02646
216591014623	HMMPfam hit to PF02646, RmuC family, score 7.9e-125
216591014624	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
216591014625	D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); Region: GDH; cd05301
216591014626	dimerization interface [polypeptide binding]; other site
216591014627	ligand binding site [chemical binding]; other site
216591014628	NADP binding site [chemical binding]; other site
216591014629	catalytic site [active]
216591014630	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 1.7e-31
216591014631	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 2.1e-88
216591014632	PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
216591014633	Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]; Region: ArsB; COG1055
216591014634	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl17221
216591014635	12 probable transmembrane helices predicted for BCAL2896 by TMHMM2.0 at aa 4-26, 33-55, 70-92, 99-116, 131-153, 166-188, 203-225, 258-280, 329-351, 372-394, 409-431 and 451-473
216591014636	Uncharacterized conserved protein [Function unknown]; Region: COG1556
216591014637	HMMPfam hit to PF02589, Uncharacterized ACR, YkgG family COG1556, score 1.5e-08
216591014638	nicotinate phosphoribosyltransferase; Region: NAPRTase; TIGR01514
216591014639	Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting; Region: PncB_like; cd01401
216591014640	active site
216591014641	HMMPfam hit to PF04095, Nicotinate phosphoribosyltransferase (NAPRTa, score 1.1e-106
216591014642	Ferredoxin [Energy production and conversion]; Region: COG1146
216591014643	4Fe-4S binding domain; Region: Fer4; cl02805
216591014644	Domain of unknown function (DUF3470); Region: DUF3470; pfam11953
216591014645	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0067
216591014646	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 1.1e-06
216591014647	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591014648	Uncharacterized protein conserved in bacteria [Function unknown]; Region: CreA; COG3045
216591014649	CreA protein; Region: CreA; pfam05981
216591014650	HMMPfam hit to PF05981, CreA protein, score 2e-78
216591014651	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591014652	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591014653	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591014654	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591014655	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 1.8e-26
216591014656	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 1.9e-08
216591014657	Predicted helix-turn-helix motif with score 1320.000, SD 3.68 at aa 218-239, sequence VTLDEVAQAAGLSPFHAARLFT
216591014658	PS00041 Bacterial regulatory proteins, araC family signature.
216591014659	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 2.5e-05
216591014660	Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]; Region: AzlC; COG1296
216591014661	HMMPfam hit to PF03591, AzlC protein, score 5.3e-53
216591014662	5 probable transmembrane helices predicted for BCAL2902 by TMHMM2.0 at aa 31-53, 65-87, 148-170, 177-199 and 214-236
216591014663	Branched-chain amino acid transport protein (AzlD); Region: AzlD; cl00735
216591014664	HMMPfam hit to PF05437, Branched-chain amino acid transport protein, score 1.7e-20
216591014665	3 probable transmembrane helices predicted for BCAL2903 by TMHMM2.0 at aa 4-26, 33-55 and 88-110
216591014666	Protein of unknown function (DUF4088); Region: DUF4088; pfam13317
216591014667	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014668	S4 domain; Region: S4_2; pfam13275
216591014669	Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM; Region: MATE_NorM_like; cd13131
216591014670	putative efflux protein, MATE family; Region: matE; TIGR00797
216591014671	cation binding site [ion binding]; other site
216591014672	HMMPfam hit to PF01554, MatE, score 2.4e-20
216591014673	11 probable transmembrane helices predicted for BCAL2907 by TMHMM2.0 at aa 56-78, 99-121, 141-163, 172-194, 204-226, 247-269, 279-301, 322-344, 359-381, 400-422 and 432-451
216591014674	HMMPfam hit to PF01554, MatE, score 2.8e-39
216591014675	PS00012 Phosphopantetheine attachment site.
216591014676	fumarate hydratase; Reviewed; Region: fumC; PRK00485
216591014677	Class II fumarases; Region: Fumarase_classII; cd01362
216591014678	active site
216591014679	tetramer interface [polypeptide binding]; other site
216591014680	HMMPfam hit to PF00206, Lyase, score 5e-178
216591014681	PS00163 Fumarate lyases signature.
216591014682	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
216591014683	HMMPfam hit to PF03061, Thioesterase superfamily, score 4.1e-21
216591014684	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591014685	dimerization interface [polypeptide binding]; other site
216591014686	putative DNA binding site [nucleotide binding]; other site
216591014687	putative Zn2+ binding site [ion binding]; other site
216591014688	HMMPfam hit to PF01022, Bacterial regulatory protein, arsR family, score 0.00033
216591014689	Predicted helix-turn-helix motif with score 1041.000, SD 2.73 at aa 37-58, sequence RPAGELTMIAGLSPSAASAHLA
216591014690	FecR protein; Region: FecR; pfam04773
216591014691	1 probable transmembrane helix predicted for BCAL2911 by TMHMM2.0 at aa 13-32
216591014692	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014693	thymidylate synthase; Provisional; Region: thyA; PRK13821
216591014694	Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the...; Region: TS_Pyrimidine_HMase; cd00351
216591014695	dimerization interface [polypeptide binding]; other site
216591014696	active site
216591014697	HMMPfam hit to PF00303, Thymidylate synthase, score 3.9e-74
216591014698	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591014699	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
216591014700	Walker A motif; other site
216591014701	ATP binding site [chemical binding]; other site
216591014702	Walker B motif; other site
216591014703	arginine finger; other site
216591014704	Bacterial regulatory protein, Fis family; Region: HTH_8; cl17420
216591014705	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 3.5e-11
216591014706	Predicted helix-turn-helix motif with score 2038.000, SD 6.13 at aa 418-439, sequence GRFADAARELGVSRVTLYRLMC
216591014707	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591014708	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3.2e-134
216591014709	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591014710	Dihydrofolate reductase [Coenzyme metabolism]; Region: FolA; COG0262
216591014711	Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5; Region: DHFR; cd00209
216591014712	folate binding site [chemical binding]; other site
216591014713	NADP+ binding site [chemical binding]; other site
216591014714	HMMPfam hit to PF00186, Dihydrofolate reductase, score 1.3e-61
216591014715	peptidase PmbA; Provisional; Region: PRK11040
216591014716	HMMPfam hit to PF01523, Putative modulator of DNA gyrase, score 5.5e-53
216591014717	hypothetical protein; Provisional; Region: PRK05255
216591014718	HMMPfam hit to PF04751, Protein of unknown function (DUF615), score 3.1e-48
216591014719	MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea; Region: MogA_MoaB; cd00886
216591014720	MPT binding site; other site
216591014721	trimer interface [polypeptide binding]; other site
216591014722	HMMPfam hit to PF00994, Probable molybdopterin binding domain, score 4e-27
216591014723	PS01078 Molybdenum cofactor biosynthesis proteins signature 1.
216591014724	DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins; Region: Orn; cd06135
216591014725	catalytic site [active]
216591014726	putative active site [active]
216591014727	putative substrate binding site [chemical binding]; other site
216591014728	dimer interface [polypeptide binding]; other site
216591014729	HMMPfam hit to PF00929, Exonuclease, score 4e-34
216591014730	Peptidase family M48; Region: Peptidase_M48; pfam01435
216591014731	7 probable transmembrane helices predicted for BCAL2920 by TMHMM2.0 at aa 4-26, 67-89, 104-126, 147-169, 179-201, 294-316 and 331-353
216591014732	HMMPfam hit to PF01435, Peptidase family M48, score 2.2e-38
216591014733	GTPase RsgA; Reviewed; Region: PRK00098
216591014734	S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of...; Region: S1_YloQ_GTPase; cd04466
216591014735	RNA binding site [nucleotide binding]; other site
216591014736	homodimer interface [polypeptide binding]; other site
216591014737	Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; Region: YjeQ_EngC; cd01854
216591014738	GTPase/Zn-binding domain interface [polypeptide binding]; other site
216591014739	GTP/Mg2+ binding site [chemical binding]; other site
216591014740	G4 box; other site
216591014741	G5 box; other site
216591014742	G1 box; other site
216591014743	Switch I region; other site
216591014744	G2 box; other site
216591014745	G3 box; other site
216591014746	Switch II region; other site
216591014747	HMMPfam hit to PF03193, Protein of unknown function, DUF258, score 6.6e-127
216591014748	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014749	Domain of unknown function (DUF2007); Region: DUF2007; pfam09413
216591014750	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014751	CobD/CbiB family protein; Provisional; Region: PRK07630
216591014752	HMMPfam hit to PF03186, CobD/Cbib protein, score 2.8e-06
216591014753	4 probable transmembrane helices predicted for BCAL2923 by TMHMM2.0 at aa 48-70, 72-94, 148-170 and 289-311
216591014754	Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative...; Region: CoAse; cd03426
216591014755	putative active site [active]
216591014756	putative CoA binding site [chemical binding]; other site
216591014757	nudix motif; other site
216591014758	metal binding site [ion binding]; metal-binding site
216591014759	HMMPfam hit to PF00293, NUDIX domain, score 2.1e-09
216591014760	50S ribosomal protein L19; Provisional; Region: rplS; PRK05338
216591014761	HMMPfam hit to PF01245, Ribosomal protein L19, score 7.3e-60
216591014762	PS01015 Ribosomal protein L19 signature.
216591014763	tRNA (guanine-N(1)-)-methyltransferase; Reviewed; Region: trmD; PRK00026
216591014764	HMMPfam hit to PF01746, tRNA (Guanine-1)-methyltransferase, score 4.1e-63
216591014765	16S rRNA processing protein RimM; Region: 16S_RimM; TIGR02273
216591014766	RimM N-terminal domain; Region: RimM; pfam01782
216591014767	PRC-barrel domain; Region: PRC; pfam05239
216591014768	HMMPfam hit to PF05239, PRC-barrel domain, score 8.3e-12
216591014769	HMMPfam hit to PF01782, RimM N-terminal domain, score 2.6e-12
216591014770	30S ribosomal protein S16; Reviewed; Region: rpsP; PRK00040
216591014771	HMMPfam hit to PF00886, Ribosomal protein S16, score 8e-28
216591014772	Glucose / Sorbosone dehydrogenase; Region: GSDH; pfam07995
216591014773	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5353
216591014774	4 probable transmembrane helices predicted for BCAL2930 by TMHMM2.0 at aa 15-34, 41-60, 70-92 and 113-135
216591014775	DNA repair photolyase [DNA replication, recombination, and repair]; Region: SplB; COG1533
216591014776	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cl15377
216591014777	FeS/SAM binding site; other site
216591014778	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
216591014779	HMMPfam hit to PF04055, Radical SAM superfamily, score 1.2e-20
216591014780	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
216591014781	AsnC family; Region: AsnC_trans_reg; pfam01037
216591014782	HMMPfam hit to PF01037, AsnC family, score 8.3e-26
216591014783	PS00519 Bacterial regulatory proteins, asnC family signature.
216591014784	D-amino acid dehydrogenase small subunit; Validated; Region: PRK00711
216591014785	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591014786	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 5.5e-109
216591014787	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014788	Electron transfer flavoprotein, alpha subunit [Energy production and conversion]; Region: FixB; COG2025
216591014789	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_alpha; cd01715
216591014790	Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766
216591014791	PS00696 Electron transfer flavoprotein alpha-subunit signature.
216591014792	HMMPfam hit to PF00766, Electron transfer flavoprotein FAD-binding, score 1.8e-54
216591014793	HMMPfam hit to PF01012, Electron transfer flavoprotein domain, score 2.8e-42
216591014794	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014795	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714
216591014796	Ligand binding site [chemical binding]; other site
216591014797	Electron transfer flavoprotein domain; Region: ETF; pfam01012
216591014798	HMMPfam hit to PF01012, Electron transfer flavoprotein domain, score 1.1e-67
216591014799	PS01065 Electron transfer flavoprotein beta-subunit signature.
216591014800	ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]; Region: NlpA; COG1464
216591014801	NLPA lipoprotein; Region: Lipoprotein_9; pfam03180
216591014802	HMMPfam hit to PF03180, NLPA lipoprotein, score 6.1e-135
216591014803	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591014804	dimer interface [polypeptide binding]; other site
216591014805	conserved gate region; other site
216591014806	ABC-ATPase subunit interface; other site
216591014807	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.3e-21
216591014808	5 probable transmembrane helices predicted for BCAL2937 by TMHMM2.0 at aa 18-40, 60-82, 86-108, 146-168 and 188-210
216591014809	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591014810	DL-methionine transporter ATP-binding subunit; Provisional; Region: metN; PRK11153
216591014811	ATP-binding cassette domain of methionine transporter; Region: ABC_MetN_methionine_transporter; cd03258
216591014812	Walker A/P-loop; other site
216591014813	ATP binding site [chemical binding]; other site
216591014814	Q-loop/lid; other site
216591014815	ABC transporter signature motif; other site
216591014816	Walker B; other site
216591014817	D-loop; other site
216591014818	H-loop/switch region; other site
216591014819	This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; Region: NIL; smart00930
216591014820	HMMPfam hit to PF00005, ABC transporter, score 1.9e-66
216591014821	PS00211 ABC transporters family signature.
216591014822	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014823	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
216591014824	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591014825	Serine hydrolase; Region: Ser_hydrolase; cl17834
216591014826	HMMPfam hit to PF07819, PGAP1-like protein, score 0.002
216591014827	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 8.4e-07
216591014828	PS00120 Lipases, serine active site.
216591014829	Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123
216591014830	Histone deacetylases and histone-like deacetylases, classII; Region: HDAC_classII_2; cd11599
216591014831	putative active site [active]
216591014832	Zn binding site [ion binding]; other site
216591014833	HMMPfam hit to PF00850, Histone deacetylase domain, score 1.1e-83
216591014834	Transglycosylase SLT domain; Region: SLT_2; pfam13406
216591014835	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591014836	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591014837	1 probable transmembrane helix predicted for BCAL2941 by TMHMM2.0 at aa 13-35
216591014838	cysteine synthase B; Region: cysM; TIGR01138
216591014839	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
216591014840	dimer interface [polypeptide binding]; other site
216591014841	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591014842	catalytic residue [active]
216591014843	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 2.2e-93
216591014844	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014845	PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site.
216591014846	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cl14786
216591014847	HMMPfam hit to PF00633, Helix-hairpin-helix motif, score 0.0052
216591014848	ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248
216591014849	ADP-L-glycero-D-manno-heptose-6-epimerase; Region: heptose_epim; TIGR02197
216591014850	NADP binding site [chemical binding]; other site
216591014851	homopentamer interface [polypeptide binding]; other site
216591014852	substrate binding site [chemical binding]; other site
216591014853	active site
216591014854	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.6e-55
216591014855	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 1.4e-05
216591014856	HMMPfam hit to PF07993, Male sterility protein, score 0.0048
216591014857	RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer...; Region: RfaE_like; cd01172
216591014858	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591014859	putative ribose interaction site [chemical binding]; other site
216591014860	putative ADP binding site [chemical binding]; other site
216591014861	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 8.5e-38
216591014862	PS00583 pfkB family of carbohydrate kinases signature 1.
216591014863	Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: Ugd; COG1004
216591014864	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
216591014865	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
216591014866	UDP binding domain; Region: UDPG_MGDP_dh_C; smart00984
216591014867	HMMPfam hit to PF03720, UDP-glucose/GDP-mannose dehydrogenase, score 3.6e-33
216591014868	HMMPfam hit to PF00984, UDP-glucose/GDP-mannose dehydrogenase, score 6.5e-51
216591014869	HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 6.1e-88
216591014870	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014871	tetratricopeptide repeat protein; Provisional; Region: PRK11788
216591014872	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591014873	binding surface
216591014874	TPR motif; other site
216591014875	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.31
216591014876	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.2
216591014877	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 0.35
216591014878	1 probable transmembrane helix predicted for BCAL2947 by TMHMM2.0 at aa 5-22
216591014879	2 probable transmembrane helices predicted for BCAL2948 by TMHMM2.0 at aa 21-40 and 55-77
216591014880	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
216591014881	IHF dimer interface [polypeptide binding]; other site
216591014882	IHF - DNA interface [nucleotide binding]; other site
216591014883	HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 3.1e-42
216591014884	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
216591014885	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
216591014886	RNA binding site [nucleotide binding]; other site
216591014887	S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465
216591014888	RNA binding site [nucleotide binding]; other site
216591014889	S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec3; cd05688
216591014890	RNA binding site [nucleotide binding]; other site
216591014891	S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec4; cd05689
216591014892	RNA binding site [nucleotide binding]; other site
216591014893	S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec5; cd05690
216591014894	RNA binding site [nucleotide binding]; other site
216591014895	S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec6; cd05691
216591014896	RNA binding site [nucleotide binding]; other site
216591014897	HMMPfam hit to PF00575, S1 RNA binding domain, score 3.9e-19
216591014898	HMMPfam hit to PF00575, S1 RNA binding domain, score 2.2e-21
216591014899	HMMPfam hit to PF00575, S1 RNA binding domain, score 5.7e-27
216591014900	HMMPfam hit to PF00575, S1 RNA binding domain, score 1.4e-31
216591014901	HMMPfam hit to PF00575, S1 RNA binding domain, score 4.7e-16
216591014902	HMMPfam hit to PF00575, S1 RNA binding domain, score 3.8e-07
216591014903	cytidylate kinase; Provisional; Region: cmk; PRK00023
216591014904	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
216591014905	CMP-binding site; other site
216591014906	HMMPfam hit to PF02224, Cytidylate kinase, score 2.7e-62
216591014907	3-phosphoshikimate 1-carboxyvinyltransferase; Provisional; Region: PRK02427
216591014908	EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form...; Region: EPSP_synthase; cd01556
216591014909	hinge; other site
216591014910	active site
216591014911	HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-car, score 8.7e-164
216591014912	PS00885 EPSP synthase signature 2.
216591014913	PS00104 EPSP synthase signature 1.
216591014914	Prephenate dehydrogenase [Amino acid transport and metabolism]; Region: TyrA; COG0287
216591014915	prephenate dehydrogenase; Validated; Region: PRK08507
216591014916	HMMPfam hit to PF02153, Prephenate dehydrogenase, score 1.5e-83
216591014917	Chorismate mutase type II; Region: CM_2; smart00830
216591014918	Prephenate dehydratase [Amino acid transport and metabolism]; Region: PheA; COG0077
216591014919	Prephenate dehydratase; Region: PDT; pfam00800
216591014920	C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905
216591014921	putative L-Phe binding site [chemical binding]; other site
216591014922	HMMPfam hit to PF01842, ACT domain, score 1.8e-11
216591014923	HMMPfam hit to PF00800, Prephenate dehydratase, score 2.1e-72
216591014924	HMMPfam hit to PF01817, Chorismate mutase type II, score 1e-29
216591014925	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
216591014926	Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT).  PSAT is active as...; Region: PSAT_like; cd00611
216591014927	homodimer interface [polypeptide binding]; other site
216591014928	substrate-cofactor binding pocket; other site
216591014929	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591014930	catalytic residue [active]
216591014931	HMMPfam hit to PF00266, Aminotransferase class-V, score 1.5e-37
216591014932	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.
216591014933	Uncharacterized protein conserved in bacteria (DUF2059); Region: DUF2059; pfam09832
216591014934	DNA gyrase subunit A; Validated; Region: PRK05560
216591014935	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
216591014936	CAP-like domain; other site
216591014937	active site
216591014938	primary dimer interface [polypeptide binding]; other site
216591014939	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
216591014940	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
216591014941	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
216591014942	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
216591014943	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
216591014944	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
216591014945	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 6.4e-15
216591014946	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 3.3e-15
216591014947	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 8.8e-13
216591014948	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 7e-10
216591014949	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 1.1e-13
216591014950	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 3.9e-14
216591014951	HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV, subunit A, score 0
216591014952	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591014953	ligand binding site [chemical binding]; other site
216591014954	HMMPfam hit to PF00691, OmpA family, score 6.4e-34
216591014955	bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional; Region: PRK05134
216591014956	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591014957	S-adenosylmethionine binding site [chemical binding]; other site
216591014958	HMMPfam hit to PF02353, Cyclopropane-fatty-acyl-phospholipid, score 0.0033
216591014959	HMMPfam hit to PF08241, Methyltransferase domain, score 6.8e-24
216591014960	HMMPfam hit to PF08242, Methyltransferase domain, score 3.9e-14
216591014961	phosphoglycolate phosphatase; Provisional; Region: PRK13222
216591014962	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591014963	motif II; other site
216591014964	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1.3e-32
216591014965	BcenGI9
216591014966	integrase; Provisional; Region: PRK09692
216591014967	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
216591014968	active site
216591014969	Int/Topo IB signature motif; other site
216591014970	HMMPfam hit to PF00589, Phage integrase family, score 6.6e-12
216591014971	CRISPR/Cas system-associated protein Cas3/Cas2; Region: Cas3_Cas2_I-F; cd09673
216591014972	UV radiation resistance protein and autophagy-related subunit 14; Region: Atg14; pfam10186
216591014973	Prophage CP4-57 regulatory protein (AlpA); Region: Phage_AlpA; cl17523
216591014974	HMMPfam hit to PF05930, Prophage CP4-57 regulatory protein (AlpA), score 0.0031
216591014975	KilA-N domain; Region: KilA-N; pfam04383
216591014976	HMMPfam hit to PF04383, KilA-N domain, score 1.8e-13
216591014977	Helix-turn-helix domain; Region: HTH_39; pfam14090
216591014978	Primase C terminal 2 (PriCT-2); Region: PriCT_2; pfam08707
216591014979	Domain of unknown function (DUF927); Region: DUF927; pfam06048
216591014980	PS00216 Sugar transport proteins signature 1.
216591014981	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591014982	PS00017 ATP/GTP-binding site motif A (P-loop).
216591014983	phage baseplate assembly protein V; Region: phage_P2_V; TIGR01644
216591014984	Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold; Region: RPA_2b-aaRSs_OBF_like; cl09930
216591014985	generic binding surface I; other site
216591014986	generic binding surface II; other site
216591014987	Phage regulatory protein Rha (Phage_pRha); Region: Phage_pRha; cl10713
216591014988	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591014989	1 probable transmembrane helix predicted for BCAL2973 by TMHMM2.0 at aa 4-26
216591014990	1 probable transmembrane helix predicted for BCAL2974 by TMHMM2.0 at aa 40-62
216591014991	N-terminal domain of molybdenum-binding protein [General function prediction only]; Region: ModE; cl17549
216591014992	aminoethylphosphonate catabolism associated LysR family transcriptional regulator; Region: phn_lysR; TIGR03339
216591014993	PBP superfamily domain; Region: PBP_like; pfam12727
216591014994	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix protei, score 2.6e-10
216591014995	Predicted helix-turn-helix motif with score 991.000, SD 2.56 at aa 36-57, sequence GSIAQAAQAKGLSYRHAWGMLR
216591014996	formate dehydrogenase subunit gamma; Validated; Region: PRK05988
216591014997	TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a...; Region: TRX_Fd_NuoE_FDH_gamma; cd03081
216591014998	putative dimer interface [polypeptide binding]; other site
216591014999	[2Fe-2S] cluster binding site [ion binding]; other site
216591015000	TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of...; Region: TRX_Fd_FDH_beta; cd03063
216591015001	putative dimer interface [polypeptide binding]; other site
216591015002	NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]; Region: NuoF; COG1894
216591015003	SLBB domain; Region: SLBB; pfam10531
216591015004	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; smart00928
216591015005	HMMPfam hit to PF01512, Respiratory-chain NADH dehydrogenase, score 1.2e-102
216591015006	PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2.
216591015007	Uncharacterized anaerobic dehydrogenase [General function prediction only]; Region: COG3383
216591015008	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591015009	catalytic loop [active]
216591015010	iron binding site [ion binding]; other site
216591015011	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588
216591015012	Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is...; Region: MopB_Formate-Dh-H; cd02753
216591015013	[4Fe-4S] binding site [ion binding]; other site
216591015014	molybdopterin cofactor binding site; other site
216591015015	This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex  and catalyzes the reversible oxidation of formate...; Region: MopB_CT_Fdh-Nap-like; cd00508
216591015016	molybdopterin cofactor binding site; other site
216591015017	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding do, score 4.9e-09
216591015018	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0053
216591015019	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591015020	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 2.7e-05
216591015021	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591015022	HMMPfam hit to PF04879, Molybdopterin oxidoreductase Fe4S4 do, score 4.2e-20
216591015023	PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.
216591015024	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 1.5e-103
216591015025	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 6.8e-42
216591015026	PS00932 Prokaryotic molybdopterin oxidoreductases signature 3.
216591015027	NADH-dependant formate dehydrogenase delta subunit FdsD; Region: FdsD; pfam11390
216591015028	hypothetical protein; Provisional; Region: PRK06184
216591015029	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591015030	HMMPfam hit to PF01494, FAD binding domain, score 1.7e-86
216591015031	Tetratricopeptide repeat; Region: TPR_16; pfam13432
216591015032	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591015033	binding surface
216591015034	TPR motif; other site
216591015035	TPR repeat; Region: TPR_11; pfam13414
216591015036	TPR repeat; Region: TPR_11; pfam13414
216591015037	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591015038	binding surface
216591015039	TPR motif; other site
216591015040	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591015041	TPR repeat; Region: TPR_11; pfam13414
216591015042	TPR motif; other site
216591015043	binding surface
216591015044	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
216591015045	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.0012
216591015046	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 1.4e-06
216591015047	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.02
216591015048	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 2.7e-10
216591015049	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.002
216591015050	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 8.6e-10
216591015051	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.0033
216591015052	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.00056
216591015053	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.029
216591015054	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 8e-06
216591015055	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.032
216591015056	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 9.5e-05
216591015057	HMMPfam hit to PF00515, Tetratricopeptide repeat, score 9e-07
216591015058	citrate-proton symporter; Provisional; Region: PRK15075
216591015059	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591015060	putative substrate translocation pore; other site
216591015061	HMMPfam hit to PF00083, Sugar (and other) transporter, score 5.4e-42
216591015062	12 probable transmembrane helices predicted for BCAL2982 by TMHMM2.0 at aa 20-42, 57-79, 88-110, 120-142, 163-182, 187-207, 239-261, 276-298, 305-327, 337-356, 369-391 and 401-419
216591015063	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.3e-22
216591015064	PS00216 Sugar transport proteins signature 1.
216591015065	PS00217 Sugar transport proteins signature 2.
216591015066	1 probable transmembrane helix predicted for BCAL2982A by TMHMM2.0 at aa 105-124
216591015067	Protein of unknown function (DUF2968); Region: DUF2968; pfam11180
216591015068	Predicted glutamine amidotransferases [General function prediction only]; Region: COG2071
216591015069	Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_2; cd01745
216591015070	catalytic triad [active]
216591015071	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 5.5e-05
216591015072	HMMPfam hit to PF07722, Peptidase C26, score 9.4e-49
216591015073	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015074	Transcriptional regulators [Transcription]; Region: GntR; COG1802
216591015075	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591015076	DNA-binding site [nucleotide binding]; DNA binding site
216591015077	FCD domain; Region: FCD; pfam07729
216591015078	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 2.6e-13
216591015079	HMMPfam hit to PF07729, FCD domain, score 3.6e-30
216591015080	amidase; Provisional; Region: PRK07056
216591015081	Amidase; Region: Amidase; cl11426
216591015082	HMMPfam hit to PF01425, Amidase, score 8.7e-103
216591015083	PS00571 Amidases signature.
216591015084	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015085	disulfide bond formation protein B; Provisional; Region: PRK02110
216591015086	HMMPfam hit to PF02600, Disulfide bond formation protein DsbB, score 9.8e-13
216591015087	4 probable transmembrane helices predicted for BCAL2987 by TMHMM2.0 at aa 13-35, 45-64, 69-91 and 137-159
216591015088	XdhC and CoxI family; Region: XdhC_CoxI; pfam02625
216591015089	xanthine dehydrogenase accessory protein XdhC; Region: xanthine_xdhC; TIGR02964
216591015090	XdhC Rossmann domain; Region: XdhC_C; pfam13478
216591015091	HMMPfam hit to PF02625, XdhC and CoxI family, score 3e-17
216591015092	Adenosine deaminase [Nucleotide transport and metabolism]; Region: Add; COG1816
216591015093	Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in...; Region: ADA; cd01320
216591015094	active site
216591015095	purine riboside binding site [chemical binding]; other site
216591015096	HMMPfam hit to PF00962, Adenosine/AMP deaminase, score 7.5e-73
216591015097	guanine deaminase; Provisional; Region: PRK09228
216591015098	Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and...; Region: GDEase; cd01303
216591015099	active site
216591015100	HMMPfam hit to PF01979, Amidohydrolase family, score 3.5e-51
216591015101	HMMPfam hit to PF07969, Amidohydrolase family, score 0.00056
216591015102	Predicted membrane protein [Function unknown]; Region: COG2119
216591015103	Uncharacterized protein family UPF0016; Region: UPF0016; pfam01169
216591015104	Uncharacterized protein family UPF0016; Region: UPF0016; pfam01169
216591015105	5 probable transmembrane helices predicted for BCAL2991 by TMHMM2.0 at aa 35-57, 67-86, 98-115, 135-157 and 169-188
216591015106	HMMPfam hit to PF01169, Uncharacterized protein family UPF0016, score 2.1e-12
216591015107	Domain of unknown function (DUF4136); Region: DUF4136; pfam13590
216591015108	1 probable transmembrane helix predicted for BCAL2992 by TMHMM2.0 at aa 7-29
216591015109	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015110	aminopeptidase N; Provisional; Region: pepN; PRK14015
216591015111	Peptidase M1 family containing Aminopeptidase N; Region: M1_APN_1; cd09600
216591015112	active site
216591015113	Zn binding site [ion binding]; other site
216591015114	HMMPfam hit to PF01433, Peptidase family M1, score 8.1e-59
216591015115	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591015116	fructose-1,6-bisphosphatase family protein; Region: PLN02628
216591015117	Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate  into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1; Region: FBPase; cd00354
216591015118	AMP binding site [chemical binding]; other site
216591015119	metal binding site [ion binding]; metal-binding site
216591015120	active site
216591015121	HMMPfam hit to PF00316, Fructose-1-6-bisphosphatase, score 1.9e-168
216591015122	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591015123	DNA binding residues [nucleotide binding]
216591015124	dimerization interface [polypeptide binding]; other site
216591015125	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 3.2e-11
216591015126	PS00622 Bacterial regulatory proteins, luxR family signature.
216591015127	FAD-dependent oxidoreductase; Provisional; Region: PRK08132
216591015128	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591015129	HMMPfam hit to PF01494, FAD binding domain, score 1.1e-45
216591015130	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00016
216591015131	3 probable transmembrane helices predicted for BCAL2998 by TMHMM2.0 at aa 4-23, 28-50 and 55-77
216591015132	HMMPfam hit to PF04226, Transglycosylase associated protein, score 1.3e-13
216591015133	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
216591015134	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591015135	BNR repeat-like domain; Region: BNR_2; pfam13088
216591015136	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 2.7
216591015137	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 8.4
216591015138	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 1.4
216591015139	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 52
216591015140	Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]; Region: CirA; COG1629
216591015141	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591015142	N-terminal plug; other site
216591015143	ligand-binding site [chemical binding]; other site
216591015144	HMMPfam hit to PF00593, TonB dependent receptor, score 7.6e-31
216591015145	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 2.9e-17
216591015146	Protein of unknown function (DUF2946); Region: DUF2946; pfam11162
216591015147	1 probable transmembrane helix predicted for BCAL3002 by TMHMM2.0 at aa 7-29
216591015148	chorismate mutase; Provisional; Region: PRK09269
216591015149	Chorismate mutase type II; Region: CM_2; cl00693
216591015150	HMMPfam hit to PF01817, Chorismate mutase type II, score 2.7e-09
216591015151	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
216591015152	active site
216591015153	catalytic site [active]
216591015154	substrate binding site [chemical binding]; other site
216591015155	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
216591015156	GIY-YIG motif/motif A; other site
216591015157	active site
216591015158	catalytic site [active]
216591015159	putative DNA binding site [nucleotide binding]; other site
216591015160	metal binding site [ion binding]; metal-binding site
216591015161	HMMPfam hit to PF01541, GIY-YIG catalytic domain, score 2.4e-06
216591015162	HMMPfam hit to PF00929, Exonuclease, score 1.3e-33
216591015163	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
216591015164	DNA-binding site [nucleotide binding]; DNA binding site
216591015165	RNA-binding motif; other site
216591015166	HMMPfam hit to PF00313, 'Cold-shock' DNA-binding domain, score 6.6e-38
216591015167	PS00352 'Cold-shock' DNA-binding domain signature.
216591015168	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591015169	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591015170	trimer interface [polypeptide binding]; other site
216591015171	eyelet of channel; other site
216591015172	HMMPfam hit to PF00267, Gram-negative porin, score 1e-06
216591015173	PS00572 Glycosyl hydrolases family 1 active site.
216591015174	transcription elongation factor GreB; Reviewed; Region: greB; PRK01885
216591015175	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
216591015176	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
216591015177	HMMPfam hit to PF01272, Prokaryotic transcription elongation fact, score 3e-21
216591015178	PS00830 Prokaryotic transcription elongation factors signature 2.
216591015179	HMMPfam hit to PF03449, Prokaryotic transcription elongation fact, score 2.7e-35
216591015180	PS00829 Prokaryotic transcription elongation factors signature 1.
216591015181	Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317
216591015182	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
216591015183	Zn2+ binding site [ion binding]; other site
216591015184	Mg2+ binding site [ion binding]; other site
216591015185	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
216591015186	synthetase active site [active]
216591015187	NTP binding site [chemical binding]; other site
216591015188	metal binding site [ion binding]; metal-binding site
216591015189	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
216591015190	ACT  domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876
216591015191	HMMPfam hit to PF01842, ACT domain, score 0.0046
216591015192	HMMPfam hit to PF02824, TGS domain, score 4.6e-24
216591015193	HMMPfam hit to PF04607, Region found in RelA / SpoT proteins, score 1.8e-44
216591015194	HMMPfam hit to PF01966, HD domain, score 1.4e-13
216591015195	DNA-directed RNA polymerase subunit omega; Reviewed; Region: rpoZ; PRK00392
216591015196	HMMPfam hit to PF01192, RNA polymerase Rpb6, score 1.4e-14
216591015197	Guanylate kinase [Nucleotide transport and metabolism]; Region: Gmk; COG0194
216591015198	Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine...; Region: GMPK; cd00071
216591015199	catalytic site [active]
216591015200	G-X2-G-X-G-K; other site
216591015201	HMMPfam hit to PF00625, Guanylate kinase, score 4.2e-40
216591015202	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015203	hypothetical protein; Provisional; Region: PRK11820
216591015204	YicC-like family, N-terminal region; Region: YicC_N; pfam03755
216591015205	Domain of unknown function (DUF1732); Region: DUF1732; pfam08340
216591015206	HMMPfam hit to PF08340, Domain of unknown function (DUF1732), score 3.2e-51
216591015207	HMMPfam hit to PF03755, YicC-like family, N-terminal region, score 1.2e-37
216591015208	ribonuclease PH; Reviewed; Region: rph; PRK00173
216591015209	Ribonuclease PH; Region: RNase_PH_bact; cd11362
216591015210	hexamer interface [polypeptide binding]; other site
216591015211	active site
216591015212	HMMPfam hit to PF01138, 3' exoribonuclease family, domain, score 1.6e-48
216591015213	PS01277 Ribonuclease PH signature.
216591015214	HMMPfam hit to PF03725, 3' exoribonuclease family, domain, score 5.9e-18
216591015215	NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A...; Region: HAM1; cd00515
216591015216	active site
216591015217	dimerization interface [polypeptide binding]; other site
216591015218	HMMPfam hit to PF01725, Ham1 family, score 6.6e-67
216591015219	coproporphyrinogen III oxidase; Provisional; Region: PRK08898
216591015220	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591015221	FeS/SAM binding site; other site
216591015222	HemN C-terminal domain; Region: HemN_C; pfam06969
216591015223	HMMPfam hit to PF04055, Radical SAM superfamily, score 7.7e-26
216591015224	HMMPfam hit to PF06969, HemN C-terminal region, score 2.7e-23
216591015225	Gram-negative bacterial tonB protein; Region: TonB; cl10048
216591015226	1 probable transmembrane helix predicted for BCAL3019 by TMHMM2.0 at aa 12-34
216591015227	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015228	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591015229	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591015230	putative substrate translocation pore; other site
216591015231	HMMPfam hit to PF00083, Sugar (and other) transporter, score 9.2e-22
216591015232	11 probable transmembrane helices predicted for BCAL3020 by TMHMM2.0 at aa 24-46, 66-88, 95-117, 166-188, 195-217, 250-272, 285-307, 317-336, 343-365, 375-397 and 404-426
216591015233	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.9e-21
216591015234	PS00216 Sugar transport proteins signature 1.
216591015235	2 probable transmembrane helices predicted for BCAL3021 by TMHMM2.0 at aa 28-50 and 57-79
216591015236	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
216591015237	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
216591015238	putative active site [active]
216591015239	HMMPfam hit to PF01075, Glycosyltransferase family, score 6.1e-24
216591015240	Chloride channel protein EriC [Inorganic ion transport and metabolism]; Region: EriC; COG0038
216591015241	ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a...; Region: EriC_like; cd01034
216591015242	putative ion selectivity filter; other site
216591015243	putative pore gating glutamate residue; other site
216591015244	putative H+/Cl- coupling transport residue; other site
216591015245	10 probable transmembrane helices predicted for BCAL3023 by TMHMM2.0 at aa 24-45, 60-77, 109-131, 165-187, 194-216, 236-258, 278-300, 329-351, 358-380 and 390-412
216591015246	HMMPfam hit to PF00654, Voltage gated chloride channel, score 2.2e-22
216591015247	PS00044 Bacterial regulatory proteins, lysR family signature.
216591015248	cell division topological specificity factor MinE; Provisional; Region: PRK13989
216591015249	HMMPfam hit to PF03776, Septum formation topological specificity fac, score 1.3e-36
216591015250	Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]; Region: MinD; COG2894
216591015251	Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal...; Region: MinD; cd02036
216591015252	Switch I; other site
216591015253	Switch II; other site
216591015254	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 7.3e-26
216591015255	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015256	septum formation inhibitor; Reviewed; Region: PRK01973
216591015257	Septum formation inhibitor MinC, N-terminal domain; Region: MinC_N; pfam05209
216591015258	Septum formation inhibitor MinC, C-terminal domain; Region: MinC_C; pfam03775
216591015259	HMMPfam hit to PF03775, Septum formation inhibitor MinC, C-terminal, score 2.7e-65
216591015260	HMMPfam hit to PF05209, Septum formation inhibitor MinC, N-terminal, score 0.00022
216591015261	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591015262	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.4e-14
216591015263	Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes...; Region: Alkane-hydroxylase; cd03512
216591015264	Fatty acid desaturase; Region: FA_desaturase; pfam00487
216591015265	Di-iron ligands [ion binding]; other site
216591015266	6 probable transmembrane helices predicted for BCAL3029 by TMHMM2.0 at aa 17-39, 43-65, 86-108, 112-134, 235-257 and 330-352
216591015267	HMMPfam hit to PF00487, Fatty acid desaturase, score 2e-09
216591015268	seryl-tRNA synthetase; Provisional; Region: PRK05431
216591015269	Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403
216591015270	Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770
216591015271	dimer interface [polypeptide binding]; other site
216591015272	active site
216591015273	motif 1; other site
216591015274	motif 2; other site
216591015275	motif 3; other site
216591015276	HMMPfam hit to PF00587, tRNA synthetase class II core domain (G,, score 5.9e-65
216591015277	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591015278	HMMPfam hit to PF02403, Seryl-tRNA synthetase N-terminal domain, score 6.6e-45
216591015279	Uncharacterized conserved protein (DUF2164); Region: DUF2164; pfam09932
216591015280	recombination factor protein RarA; Reviewed; Region: PRK13342
216591015281	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591015282	Walker A motif; other site
216591015283	ATP binding site [chemical binding]; other site
216591015284	Walker B motif; other site
216591015285	arginine finger; other site
216591015286	MgsA AAA+ ATPase C terminal; Region: MgsA_C; pfam12002
216591015287	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 7.1e-18
216591015288	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 0.00079
216591015289	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015290	lipoprotein chaperone; Reviewed; Region: lolA; PRK00031
216591015291	Outer membrane lipoprotein carrier protein LolA; Region: LolA; pfam03548
216591015292	HMMPfam hit to PF03548, Outer membrane lipoprotein carrier protein L, score 6.4e-43
216591015293	Domain of unknown function (DUF4117); Region: DUF4117; pfam13491
216591015294	FtsK/SpoIIIE family; Region: FtsK_SpoIIIE; pfam01580
216591015295	Ftsk gamma domain; Region: Ftsk_gamma; pfam09397
216591015296	HMMPfam hit to PF01580, FtsK/SpoIIIE family, score 1.5e-78
216591015297	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015298	3 probable transmembrane helices predicted for BCAL3034 by TMHMM2.0 at aa 21-43, 68-90 and 164-186
216591015299	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015300	thioredoxin reductase; Provisional; Region: PRK10262
216591015301	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591015302	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591015303	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 1.2e-45
216591015304	PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site.
216591015305	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 5.5e-22
216591015306	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2840
216591015307	Smr domain; Region: Smr; pfam01713
216591015308	HMMPfam hit to PF01713, Smr domain, score 1.1e-28
216591015309	Predicted membrane protein [Function unknown]; Region: COG2860
216591015310	UPF0126 domain; Region: UPF0126; pfam03458
216591015311	UPF0126 domain; Region: UPF0126; pfam03458
216591015312	7 probable transmembrane helices predicted for BCAL3037 by TMHMM2.0 at aa 5-27, 34-56, 69-88, 95-117, 122-144, 157-174 and 178-197
216591015313	HMMPfam hit to PF03458, UPF0126 domain, score 3.1e-12
216591015314	HMMPfam hit to PF03458, UPF0126 domain, score 2.1e-26
216591015315	glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650
216591015316	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
216591015317	Walker A/P-loop; other site
216591015318	ATP binding site [chemical binding]; other site
216591015319	Q-loop/lid; other site
216591015320	ABC transporter signature motif; other site
216591015321	Walker B; other site
216591015322	D-loop; other site
216591015323	H-loop/switch region; other site
216591015324	TOBE domain; Region: TOBE_2; pfam08402
216591015325	HMMPfam hit to PF08402, TOBE domain, score 6.9e-08
216591015326	HMMPfam hit to PF03459, TOBE domain, score 0.00021
216591015327	HMMPfam hit to PF00005, ABC transporter, score 2.6e-62
216591015328	PS00211 ABC transporters family signature.
216591015329	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015330	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015331	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
216591015332	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591015333	dimer interface [polypeptide binding]; other site
216591015334	conserved gate region; other site
216591015335	putative PBP binding loops; other site
216591015336	ABC-ATPase subunit interface; other site
216591015337	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.2e-15
216591015338	7 probable transmembrane helices predicted for BCAL3039 by TMHMM2.0 at aa 7-29, 82-104, 111-133, 143-165, 186-208, 218-240 and 253-275
216591015339	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591015340	dimer interface [polypeptide binding]; other site
216591015341	conserved gate region; other site
216591015342	putative PBP binding loops; other site
216591015343	ABC-ATPase subunit interface; other site
216591015344	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.0034
216591015345	6 probable transmembrane helices predicted for BCAL3040 by TMHMM2.0 at aa 13-35, 70-92, 104-126, 155-177, 211-233 and 259-281
216591015346	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
216591015347	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
216591015348	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 6.2e-15
216591015349	glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722
216591015350	Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479
216591015351	Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781
216591015352	HMMPfam hit to PF00479, Glucose-6-phosphate dehydrogenase, NAD bindi, score 1.8e-76
216591015353	PS00069 Glucose-6-phosphate dehydrogenase active site.
216591015354	HMMPfam hit to PF02781, Glucose-6-phosphate dehydrogenase, C-termina, score 1.8e-141
216591015355	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; Region: NagB; COG0363
216591015356	6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard...; Region: 6PGL; cd01400
216591015357	putative active site [active]
216591015358	bifunctional glucokinase/RpiR family transcriptional regulator; Provisional; Region: PRK14101
216591015359	glucokinase; Provisional; Region: glk; PRK00292
216591015360	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591015361	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
216591015362	putative active site [active]
216591015363	HMMPfam hit to PF02685, Glucokinase, score 1.6e-171
216591015364	HMMPfam hit to PF01418, Helix-turn-helix domain, rpiR family, score 3.7e-21
216591015365	Predicted helix-turn-helix motif with score 1301.000, SD 3.62 at aa 375-396, sequence DPIVDIARKADVSQPTVIRFCR
216591015366	PS00356 Bacterial regulatory proteins, lacI family signature.
216591015367	HMMPfam hit to PF01380, SIS domain, score 1.1e-19
216591015368	putative transposase OrfB; Reviewed; Region: PHA02517
216591015369	HTH-like domain; Region: HTH_21; pfam13276
216591015370	Integrase core domain; Region: rve; pfam00665
216591015371	Integrase core domain; Region: rve_2; pfam13333
216591015372	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591015373	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591015374	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591015375	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591015376	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591015377	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591015378	bicyclomycin/multidrug efflux system; Provisional; Region: PRK11102
216591015379	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591015380	putative substrate translocation pore; other site
216591015381	12 probable transmembrane helices predicted for BCAL3047 by TMHMM2.0 at aa 13-32, 52-71, 78-100, 104-126, 138-160, 165-187, 216-238, 253-271, 278-300, 304-326, 346-368 and 372-394
216591015382	HMMPfam hit to PF00083, Sugar (and other) transporter, score 0.00017
216591015383	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5e-52
216591015384	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015385	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015386	glutamate-1-semialdehyde aminotransferase; Provisional; Region: PRK00062
216591015387	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591015388	inhibitor-cofactor binding pocket; inhibition site
216591015389	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591015390	catalytic residue [active]
216591015391	HMMPfam hit to PF00202, Aminotransferase class-III, score 1.9e-75
216591015392	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591015393	riboflavin biosynthesis protein RibD; Region: eubact_ribD; TIGR00326
216591015394	Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284
216591015395	catalytic motif [active]
216591015396	Zn binding site [ion binding]; other site
216591015397	RibD C-terminal domain; Region: RibD_C; cl17279
216591015398	HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 2.9e-41
216591015399	PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.
216591015400	HMMPfam hit to PF01872, RibD C-terminal domain, score 1.4e-56
216591015401	riboflavin synthase subunit alpha; Provisional; Region: PRK09289
216591015402	Lumazine binding domain; Region: Lum_binding; pfam00677
216591015403	Lumazine binding domain; Region: Lum_binding; pfam00677
216591015404	HMMPfam hit to PF00677, Lumazine binding domain, score 9.6e-11
216591015405	HMMPfam hit to PF00677, Lumazine binding domain, score 5.1e-26
216591015406	PS00693 Riboflavin synthase alpha chain family signature.
216591015407	Domain of unknown function (DUF1993); Region: DUF1993; pfam09351
216591015408	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional; Region: PRK14019
216591015409	3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; pfam00926
216591015410	GTP cyclohydrolase II; Region: GTP_cyclohydro2; pfam00925
216591015411	dimerization interface [polypeptide binding]; other site
216591015412	active site
216591015413	HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone 4-phosphate, score 3.2e-112
216591015414	HMMPfam hit to PF00925, GTP cyclohydrolase II, score 2.7e-09
216591015415	lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209
216591015416	homopentamer interface [polypeptide binding]; other site
216591015417	active site
216591015418	HMMPfam hit to PF00885, 6,7-dimethyl-8-ribityllumazine synthase, score 2.8e-51
216591015419	transcription antitermination protein NusB; Reviewed; Region: nusB; PRK00202
216591015420	putative RNA binding site [nucleotide binding]; other site
216591015421	HMMPfam hit to PF01029, NusB family, score 2.1e-27
216591015422	aminotransferase; Validated; Region: PRK07337
216591015423	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591015424	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591015425	homodimer interface [polypeptide binding]; other site
216591015426	catalytic residue [active]
216591015427	HMMPfam hit to PF00155, Aminotransferase class I and II, score 4.6e-63
216591015428	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015429	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.
216591015430	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015431	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
216591015432	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591015433	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591015434	catalytic residue [active]
216591015435	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 6.5e-14
216591015436	1 probable transmembrane helix predicted for BCAL3057 by TMHMM2.0 at aa 27-49
216591015437	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015438	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Region: UbiD; cl00311
216591015439	HMMPfam hit to PF01977, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, score 2.9e-186
216591015440	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591015441	PS00024 Hemopexin domain signature.
216591015442	LysE type translocator; Region: LysE; cl00565
216591015443	6 probable transmembrane helices predicted for BCAL3059 by TMHMM2.0 at aa 13-35, 42-64, 74-93, 124-146, 156-175 and 196-218
216591015444	HMMPfam hit to PF01810, LysE type translocator, score 1e-29
216591015445	2 probable transmembrane helices predicted for BCAL3059A by TMHMM2.0 at aa 20-42 and 57-79
216591015446	NADP oxidoreductase coenzyme F420-dependent; Region: F420_oxidored; pfam03807
216591015447	Domain of unknown function (DUF2520); Region: DUF2520; pfam10728
216591015448	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 0.00066
216591015449	HMMPfam hit to PF03807, NADP oxidoreductase coenzyme F420-depen, score 0.00026
216591015450	YGGT family; Region: YGGT; pfam02325
216591015451	YGGT family; Region: YGGT; pfam02325
216591015452	4 probable transmembrane helices predicted for BCAL3061 by TMHMM2.0 at aa 5-27, 65-87, 92-114 and 159-181
216591015453	HMMPfam hit to PF02325, YGGT family, score 1.9e-13
216591015454	Uncharacterized ACR, COG1993; Region: DUF190; cl00872
216591015455	HMMPfam hit to PF02641, Uncharacterized ACR, COG1993, score 3.4e-07
216591015456	chromosome condensation membrane protein; Provisional; Region: PRK14196
216591015457	HMMPfam hit to PF02537, CrcB-like protein, score 1.8e-31
216591015458	4 probable transmembrane helices predicted for BCAL3063 by TMHMM2.0 at aa 2-24, 39-61, 68-87 and 97-119
216591015459	SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+; Region: SIR2; cl00195
216591015460	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591015461	HMMPfam hit to PF02146, Sir2 family, score 1.1e-10
216591015462	Domain of unknown function (DUF4406); Region: DUF4406; pfam14359
216591015463	GDP-mannose pyrophosphatase NudK; Provisional; Region: PRK15009
216591015464	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
216591015465	dimer interface [polypeptide binding]; other site
216591015466	ADP-ribose binding site [chemical binding]; other site
216591015467	active site
216591015468	nudix motif; other site
216591015469	metal binding site [ion binding]; metal-binding site
216591015470	HMMPfam hit to PF00293, NUDIX domain, score 3.7e-11
216591015471	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
216591015472	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591015473	DNA-binding site [nucleotide binding]; DNA binding site
216591015474	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
216591015475	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 0.0026
216591015476	HMMPfam hit to PF08220, DeoR-like helix-turn-helix domain, score 2.1e-16
216591015477	HMMPfam hit to PF08279, HTH domain, score 0.00036
216591015478	PS00894 Bacterial regulatory proteins, deoR family signature.
216591015479	Predicted helix-turn-helix motif with score 1134.000, SD 3.05 at aa 20-41, sequence VLAAELSVQFGVSEDTVRRDLR
216591015480	HMMPfam hit to PF00455, Bacterial regulatory proteins, deoR family, score 3.7e-23
216591015481	methylmalonyl-CoA decarboxylase; Provisional; Region: PRK11423
216591015482	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591015483	substrate binding site [chemical binding]; other site
216591015484	oxyanion hole (OAH) forming residues; other site
216591015485	trimer interface [polypeptide binding]; other site
216591015486	2-enoyl-CoA Hydratase C-terminal region; Region: ECH_C; pfam13766
216591015487	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 1.1e-11
216591015488	PS00166 Enoyl-CoA hydratase/isomerase signature.
216591015489	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591015490	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591015491	HMMPfam hit to PF02515, CoA-transferase family III, score 5.7e-60
216591015492	benzoate transport; Region: 2A0115; TIGR00895
216591015493	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591015494	putative substrate translocation pore; other site
216591015495	HMMPfam hit to PF00083, Sugar (and other) transporter, score 3.4e-13
216591015496	12 probable transmembrane helices predicted for BCAL3070 by TMHMM2.0 at aa 26-48, 68-90, 102-120, 125-147, 160-182, 187-206, 251-273, 288-310, 317-336, 346-368, 381-403 and 413-431
216591015497	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.6e-23
216591015498	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015499	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015500	PS00217 Sugar transport proteins signature 2.
216591015501	nitrogen assimilation transcriptional regulator; Provisional; Region: PRK11233
216591015502	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591015503	The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold; Region: PBP2_Nac; cd08433
216591015504	putative dimerization interface [polypeptide binding]; other site
216591015505	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 9.5e-24
216591015506	Predicted helix-turn-helix motif with score 1225.000, SD 3.36 at aa 16-37, sequence GNVTHASEALHVAQPAVSQQMR
216591015507	PS00044 Bacterial regulatory proteins, lysR family signature.
216591015508	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.6e-32
216591015509	LysE type translocator; Region: LysE; cl00565
216591015510	6 probable transmembrane helices predicted for BCAL3072 by TMHMM2.0 at aa 5-22, 35-57, 67-89, 121-143, 153-170 and 183-205
216591015511	HMMPfam hit to PF01810, LysE type translocator, score 3.8e-35
216591015512	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]; Region: COG4948
216591015513	Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion; Region: enolase_like; cl17188
216591015514	metal binding site [ion binding]; metal-binding site
216591015515	substrate binding pocket [chemical binding]; other site
216591015516	Predicted enzyme of the cupin superfamily [General function prediction only]; Region: COG3450
216591015517	HMMPfam hit to PF05899, Protein of unknown function (DUF861), score 2e-33
216591015518	conserved hypothetical protein (fragment);Probable gene remnant. Similar to the N-terminal region of Burkholderia vietnamiensis G4 hypothetical protein UniProt:Q4BIJ3 (EMBL:AAEH02000019) (358 aa) fasta scores: E()=1.7e-91, 70.370% id in 297 aa
216591015519	BcenGI10
216591015520	Integrase [DNA replication, recombination, and repair]; Region: XerC; COG0582
216591015521	INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinases and phage-related integrases. Some have N-terminal domains, which show little sequence...; Region: INT_SG2_C; cd01184
216591015522	Int/Topo IB signature motif; other site
216591015523	HMMPfam hit to PF00589, Phage integrase family, score 0.00053
216591015524	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591015525	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591015526	non-specific DNA binding site [nucleotide binding]; other site
216591015527	salt bridge; other site
216591015528	sequence-specific DNA binding site [nucleotide binding]; other site
216591015529	HMMPfam hit to PF01381, Helix-turn-helix, score 2.8e-12
216591015530	Predicted helix-turn-helix motif with score 1151.000, SD 3.11 at aa 25-46, sequence LSQEAFADKVGFARSYFGRVET
216591015531	2 probable transmembrane helices predicted for BCAL3077 by TMHMM2.0 at aa 65-82 and 97-114
216591015532	Domain of unknown function (DUF4309); Region: DUF4309; pfam14172
216591015533	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015534	PS00430 TonB-dependent receptor proteins signature 1.
216591015535	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015536	phosphoribosylaminoimidazole carboxylase; Region: PLN02948
216591015537	Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961
216591015538	Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining...; Region: Ser_Recombinase; cd00338
216591015539	catalytic residues [active]
216591015540	catalytic nucleophile [active]
216591015541	HMMPfam hit to PF00239, Resolvase, N terminal domain, score 7.5e-07
216591015542	3 probable transmembrane helices predicted for BCAL3083 by TMHMM2.0 at aa 23-45, 65-87 and 99-121
216591015543	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
216591015544	nucleoside/Zn binding site; other site
216591015545	dimer interface [polypeptide binding]; other site
216591015546	catalytic motif [active]
216591015547	HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 3.4e-21
216591015548	PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.
216591015549	HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU); Region: TLP_HIUase; cd05822
216591015550	active site
216591015551	homotetramer interface [polypeptide binding]; other site
216591015552	HMMPfam hit to PF00576, Transthyretin precursor (formerly preal, score 5.4e-37
216591015553	HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU); Region: TLP_HIUase; cd05822
216591015554	active site
216591015555	homotetramer interface [polypeptide binding]; other site
216591015556	HMMPfam hit to PF00576, Transthyretin precursor (formerly preal, score 8.9e-28
216591015557	1 probable transmembrane helix predicted for BCAL3086 by TMHMM2.0 at aa 12-34
216591015558	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591015559	D-galactonate transporter; Region: 2A0114; TIGR00893
216591015560	putative substrate translocation pore; other site
216591015561	12 probable transmembrane helices predicted for BCAL3087 by TMHMM2.0 at aa 26-43, 65-87, 100-122, 126-148, 155-177, 187-209, 256-278, 288-310, 322-344, 349-371, 378-400 and 415-437
216591015562	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.1e-52
216591015563	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591015564	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591015565	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591015566	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_like_4; cd08463
216591015567	putative substrate binding pocket [chemical binding]; other site
216591015568	putative dimerization interface [polypeptide binding]; other site
216591015569	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.6e-15
216591015570	Predicted helix-turn-helix motif with score 1331.000, SD 3.72 at aa 22-43, sequence RSVSRTAIRMNQSQPALSSALK
216591015571	PS00044 Bacterial regulatory proteins, lysR family signature.
216591015572	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.6e-26
216591015573	OHCU decarboxylase; Region: OHCU_decarbox; pfam09349
216591015574	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591015575	S-adenosylmethionine binding site [chemical binding]; other site
216591015576	HMMPfam hit to PF02390, Putative methyltransferase, score 3.6e-82
216591015577	undecaprenyl pyrophosphate phosphatase; Reviewed; Region: PRK00281
216591015578	5 probable transmembrane helices predicted for BCAL3091 by TMHMM2.0 at aa 83-102, 107-129, 187-209, 219-241 and 253-275
216591015579	HMMPfam hit to PF02673, Bacitracin resistance protein BacA, score 3.2e-115
216591015580	1 probable transmembrane helix predicted for BCAL3092 by TMHMM2.0 at aa 12-34
216591015581	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015582	Flagellin N-methylase; Region: FliB; pfam03692
216591015583	HMMPfam hit to PF03692, Uncharacterised protein family (UPF0153), score 8.8e-12
216591015584	coproporphyrinogen III oxidase; Provisional; Region: PRK09249
216591015585	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591015586	FeS/SAM binding site; other site
216591015587	HemN C-terminal domain; Region: HemN_C; pfam06969
216591015588	HMMPfam hit to PF04055, Radical SAM superfamily, score 1.7e-23
216591015589	HMMPfam hit to PF06969, HemN C-terminal region, score 3e-50
216591015590	Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]; Region: Pcm; COG2518
216591015591	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591015592	S-adenosylmethionine binding site [chemical binding]; other site
216591015593	HMMPfam hit to PF01135, Protein-L-isoaspartate(D-aspartate) O, score 2.9e-12
216591015594	HMMPfam hit to PF05175, Methyltransferase small domain, score 2.3e-05
216591015595	HMMPfam hit to PF08241, Methyltransferase domain, score 0.00037
216591015596	PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature.
216591015597	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125
216591015598	active site residue [active]
216591015599	HMMPfam hit to PF00581, Rhodanese-like domain, score 9e-10
216591015600	Periplasmic binding protein; Region: Peripla_BP_6; pfam13458
216591015601	Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); Region: PBP1_FmdD_like; cd06355
216591015602	putative ligand binding site [chemical binding]; other site
216591015603	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015604	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591015605	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591015606	TM-ABC transporter signature motif; other site
216591015607	8 probable transmembrane helices predicted for BCAL3099 by TMHMM2.0 at aa 242-264, 269-291, 306-325, 338-360, 384-406, 438-460, 475-497 and 504-523
216591015608	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 2.2e-41
216591015609	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015610	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
216591015611	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591015612	TM-ABC transporter signature motif; other site
216591015613	9 probable transmembrane helices predicted for BCAL3100 by TMHMM2.0 at aa 19-41, 51-73, 78-100, 135-157, 164-183, 213-235, 260-282, 302-324 and 337-359
216591015614	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 3e-30
216591015615	urea ABC transporter, ATP-binding protein UrtD; Region: urea_trans_UrtD; TIGR03411
216591015616	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591015617	Walker A/P-loop; other site
216591015618	ATP binding site [chemical binding]; other site
216591015619	Q-loop/lid; other site
216591015620	ABC transporter signature motif; other site
216591015621	Walker B; other site
216591015622	D-loop; other site
216591015623	H-loop/switch region; other site
216591015624	HMMPfam hit to PF00005, ABC transporter, score 9.9e-45
216591015625	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015626	PS00211 ABC transporters family signature.
216591015627	urea ABC transporter, ATP-binding protein UrtE; Region: urea_trans_UrtE; TIGR03410
216591015628	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591015629	Walker A/P-loop; other site
216591015630	ATP binding site [chemical binding]; other site
216591015631	Q-loop/lid; other site
216591015632	ABC transporter signature motif; other site
216591015633	Walker B; other site
216591015634	D-loop; other site
216591015635	H-loop/switch region; other site
216591015636	HMMPfam hit to PF00005, ABC transporter, score 6.7e-44
216591015637	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015638	UreD urease accessory protein; Region: UreD; cl00530
216591015639	HMMPfam hit to PF01774, UreD urease accessory protein, score 1.7e-68
216591015640	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015641	Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use...; Region: Urease_gamma; cd00390
216591015642	alpha-gamma subunit interface [polypeptide binding]; other site
216591015643	beta-gamma subunit interface [polypeptide binding]; other site
216591015644	HMMPfam hit to PF00547, Urease, gamma subunit, score 2.1e-69
216591015645	Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of...; Region: Urease_beta; cd00407
216591015646	gamma-beta subunit interface [polypeptide binding]; other site
216591015647	alpha-beta subunit interface [polypeptide binding]; other site
216591015648	HMMPfam hit to PF00699, Urease beta subunit, score 5.6e-65
216591015649	urease subunit alpha; Reviewed; Region: ureC; PRK13207
216591015650	Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of...; Region: Urease_alpha; cd00375
216591015651	subunit interactions [polypeptide binding]; other site
216591015652	active site
216591015653	flap region; other site
216591015654	HMMPfam hit to PF00449, Urease alpha-subunit, N-terminal domain, score 9.3e-84
216591015655	HMMPfam hit to PF01979, Amidohydrolase family, score 1.6e-97
216591015656	HMMPfam hit to PF07969, Amidohydrolase family, score 0.0014
216591015657	PS01120 Urease nickel ligands signature.
216591015658	PS00145 Urease active site.
216591015659	urease accessory protein UreE; Provisional; Region: ureE; PRK13263
216591015660	UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The...; Region: UreE; cd00571
216591015661	dimer interface [polypeptide binding]; other site
216591015662	catalytic residues [active]
216591015663	HMMPfam hit to PF02814, UreE urease accessory protein, N-terminal do, score 3.4e-17
216591015664	HMMPfam hit to PF05194, UreE urease accessory protein, C-terminal do, score 1.3e-44
216591015665	Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]; Region: UreF; COG0830
216591015666	UreF; Region: UreF; pfam01730
216591015667	HMMPfam hit to PF01730, UreF, score 4.7e-39
216591015668	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
216591015669	HMMPfam hit to PF02492, CobW/HypB/UreG, nucleotide-binding domain, score 3.3e-74
216591015670	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015671	3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749
216591015672	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); Region: Glycos_transf_N; pfam04413
216591015673	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
216591015674	HMMPfam hit to PF04413, 3-Deoxy-D-manno-octulosonic-acid tran, score 1.5e-79
216591015675	3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; Region: Kdo_hydroxy; pfam11004
216591015676	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
216591015677	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
216591015678	putative active site [active]
216591015679	HMMPfam hit to PF01075, Glycosyltransferase family, score 2.9e-51
216591015680	Phosphomannomutase [Carbohydrate transport and metabolism]; Region: {ManB}; COG1109
216591015681	The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a...; Region: PMM_PGM; cd03089
216591015682	active site
216591015683	substrate binding site [chemical binding]; other site
216591015684	metal binding site [ion binding]; metal-binding site
216591015685	HMMPfam hit to PF00408, Phosphoglucomutase/phosphomannomutase, C-, score 2e-15
216591015686	HMMPfam hit to PF02880, Phosphoglucomutase/phosphomannomutase, al, score 9.6e-44
216591015687	HMMPfam hit to PF02879, Phosphoglucomutase/phosphomannomutase, al, score 1.4e-45
216591015688	HMMPfam hit to PF02878, Phosphoglucomutase/phosphomannomutase, al, score 4e-44
216591015689	Multidrug and toxic compound extrusion family and similar proteins; Region: MATE_like; cl09326
216591015690	12 probable transmembrane helices predicted for BCAL3114 by TMHMM2.0 at aa 20-42, 52-74, 87-109, 119-141, 154-176, 181-200, 216-238, 267-286, 299-321, 336-358, 365-385 and 390-412
216591015691	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
216591015692	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
216591015693	active site
216591015694	HMMPfam hit to PF00535, Glycosyl transferase family, score 2.9e-09
216591015695	This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides; Region: GT1_cap1E_like; cd03808
216591015696	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591015697	putative ADP-binding pocket [chemical binding]; other site
216591015698	HMMPfam hit to PF00534, Glycosyl transferases group, score 6.8e-33
216591015699	UDP-glucose 4-epimerase; Region: PLN02240
216591015700	UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247
216591015701	NAD binding site [chemical binding]; other site
216591015702	homodimer interface [polypeptide binding]; other site
216591015703	active site
216591015704	substrate binding site [chemical binding]; other site
216591015705	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.9e-05
216591015706	HMMPfam hit to PF04321, RmlD substrate binding domain, score 0.0015
216591015707	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase f, score 1.2e-77
216591015708	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 0.00034
216591015709	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/i, score 1.5e-07
216591015710	HMMPfam hit to PF07993, Male sterility protein, score 0.00024
216591015711	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]; Region: Rfe; COG0472
216591015712	This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which...; Region: GT_MraY_like; cd06912
216591015713	Mg++ binding site [ion binding]; other site
216591015714	putative catalytic motif [active]
216591015715	11 probable transmembrane helices predicted for BCAL3118 by TMHMM2.0 at aa 5-24, 45-64, 69-91, 104-123, 133-155, 160-182, 186-205, 210-232, 242-261, 306-325 and 329-351
216591015716	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015717	HMMPfam hit to PF00953, Glycosyl transferase family, score 2.7e-17
216591015718	Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG1086
216591015719	CoA binding domain; Region: CoA_binding; cl17356
216591015720	UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; Region: UDP_invert_4-6DH_SDR_e; cd05237
216591015721	NAD(P) binding site [chemical binding]; other site
216591015722	homodimer interface [polypeptide binding]; other site
216591015723	substrate binding site [chemical binding]; other site
216591015724	active site
216591015725	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 1.3e-188
216591015726	HMMPfam hit to PF04321, RmlD substrate binding domain, score 4.5e-05
216591015727	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/i, score 3.6e-06
216591015728	HMMPfam hit to PF07993, Male sterility protein, score 0.00018
216591015729	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase f, score 1.6e-08
216591015730	HMMPfam hit to PF02629, CoA binding domain, score 0.054
216591015731	5 probable transmembrane helices predicted for BCAL3119 by TMHMM2.0 at aa 7-29, 44-66, 78-100, 105-127 and 134-156
216591015732	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]; Region: Rfe; COG0472
216591015733	The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor; Region: GT_WbpL_WbcO_like; cd06854
216591015734	Mg++ binding site [ion binding]; other site
216591015735	putative catalytic motif [active]
216591015736	putative substrate binding site [chemical binding]; other site
216591015737	10 probable transmembrane helices predicted for BCAL3120 by TMHMM2.0 at aa 13-35, 57-79, 100-118, 122-144, 149-171, 176-193, 200-222, 226-248, 274-296 and 306-323
216591015738	HMMPfam hit to PF00953, Glycosyl transferase family, score 3.7e-11
216591015739	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591015740	UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs; Region: UDP_G4E_4_SDR_e; cd05232
216591015741	putative NAD(P) binding site [chemical binding]; other site
216591015742	active site
216591015743	putative substrate binding site [chemical binding]; other site
216591015744	HMMPfam hit to PF04321, RmlD substrate binding domain, score 2.8e-09
216591015745	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/i, score 6.6e-14
216591015746	HMMPfam hit to PF05368, NmrA-like family, score 0.0012
216591015747	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 0.00096
216591015748	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase f, score 1.6e-44
216591015749	HMMPfam hit to PF07993, Male sterility protein, score 4.6e-11
216591015750	Subfamily of Glycosyltransferase Family GT2 of unknown function; Region: GT_2_like_c; cd04186
216591015751	Predicted glycosyltransferases [General function prediction only]; Region: COG1216
216591015752	Probable Catalytic site; other site
216591015753	metal-binding site
216591015754	HMMPfam hit to PF00535, Glycosyl transferase family, score 5.3e-09
216591015755	Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing...; Region: LbH_AT_putative; cd03360
216591015756	sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; Region: NeuD_NnaD; TIGR03570
216591015757	putative trimer interface [polypeptide binding]; other site
216591015758	putative CoA binding site [chemical binding]; other site
216591015759	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 25
216591015760	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 14
216591015761	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 7.3
216591015762	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
216591015763	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
216591015764	active site
216591015765	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
216591015766	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
216591015767	active site
216591015768	HMMPfam hit to PF00535, Glycosyl transferase family, score 4.7e-34
216591015769	HMMPfam hit to PF00535, Glycosyl transferase family, score 3.8e-33
216591015770	CDS is interrupted by an IS element insertion after codon 84. Previously sequenced as Burkholderia cenocepacia WbcE glycosyltransferase UniProt:Q6GVJ4_9BURK (EMBL:AY633623) (456 aa) fasta scores: E()=4.4e-181, 100.000% id in 456 aa
216591015771	HMMPfam hit to PF00534, Glycosyl transferases group, score 4.5e-08
216591015772	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591015773	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
216591015774	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
216591015775	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
216591015776	HMMPfam hit to PF01609, Transposase DDE domain, score 3.6e-32
216591015777	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
216591015778	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
216591015779	active site
216591015780	HMMPfam hit to PF00535, Glycosyl transferase family, score 8e-41
216591015781	DegT/DnrJ/EryC1/StrS aminotransferase family; Region: DegT_DnrJ_EryC1; pfam01041
216591015782	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
216591015783	inhibitor-cofactor binding pocket; inhibition site
216591015784	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591015785	catalytic residue [active]
216591015786	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 4e-89
216591015787	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.0025
216591015788	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015789	ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagH; COG1134
216591015790	ATP-binding cassette component of polysaccharide transport system; Region: ABC_KpsT_Wzt; cd03220
216591015791	Walker A/P-loop; other site
216591015792	ATP binding site [chemical binding]; other site
216591015793	Q-loop/lid; other site
216591015794	ABC transporter signature motif; other site
216591015795	Walker B; other site
216591015796	D-loop; other site
216591015797	H-loop/switch region; other site
216591015798	C-Terminal domain of O-antigenic polysaccharide transporter protein Wzt and related proteins; Region: Wzt_C-like; cd10147
216591015799	putative carbohydrate binding site [chemical binding]; other site
216591015800	HMMPfam hit to PF00005, ABC transporter, score 2.2e-42
216591015801	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015802	ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagG; COG1682
216591015803	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
216591015804	6 probable transmembrane helices predicted for BCAL3131 by TMHMM2.0 at aa 37-59, 74-96, 117-139, 149-171, 184-206 and 236-258
216591015805	HMMPfam hit to PF01061, ABC-2 type transporter, score 6.9e-40
216591015806	RmlD substrate binding domain; Region: RmlD_sub_bind; pfam04321
216591015807	dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs; Region: dTDP_HR_like_SDR_e; cd05254
216591015808	NADP binding site [chemical binding]; other site
216591015809	active site
216591015810	putative substrate binding site [chemical binding]; other site
216591015811	HMMPfam hit to PF04321, RmlD substrate binding domain, score 8.2e-141
216591015812	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 0.00062
216591015813	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 2.2e-13
216591015814	HMMPfam hit to PF07993, Male sterility protein, score 7e-05
216591015815	dTDP-4-dehydrorhamnose 3,5-epimerase; Region: rmlC; TIGR01221
216591015816	HMMPfam hit to PF00908, dTDP-4-dehydrorhamnose 3,5-epimerase, score 9.5e-109
216591015817	G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; Region: G1P_TT_short; cd02538
216591015818	glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207
216591015819	substrate binding site; other site
216591015820	tetramer interface; other site
216591015821	HMMPfam hit to PF00483, Nucleotidyl transferase, score 2.6e-109
216591015822	dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]; Region: RfbB; COG1088
216591015823	dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: dTDP_GD_SDR_e; cd05246
216591015824	NAD binding site [chemical binding]; other site
216591015825	substrate binding site [chemical binding]; other site
216591015826	homodimer interface [polypeptide binding]; other site
216591015827	active site
216591015828	HMMPfam hit to PF04321, RmlD substrate binding domain, score 2.6e-07
216591015829	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/i, score 1.2e-07
216591015830	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 0.0015
216591015831	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase f, score 3.6e-86
216591015832	HMMPfam hit to PF07993, Male sterility protein, score 6.5e-07
216591015833	diadenosine tetraphosphatase; Reviewed; Region: apaH; PRK00166
216591015834	Escherichia coli ApaH and related proteins, metallophosphatase domain; Region: MPP_ApaH; cd07422
216591015835	active site
216591015836	metal binding site [ion binding]; metal-binding site
216591015837	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 8.9e-13
216591015838	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
216591015839	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
216591015840	putative acyl-acceptor binding pocket; other site
216591015841	PS00017 ATP/GTP-binding site motif A (P-loop).
216591015842	HMMPfam hit to PF01553, Acyltransferase, score 2.9e-35
216591015843	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015844	dihydroorotase; Provisional; Region: PRK07627
216591015845	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591015846	Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C; Region: DHOase_IIa; cd01317
216591015847	active site
216591015848	HMMPfam hit to PF01979, Amidohydrolase family, score 0.0074
216591015849	aspartate carbamoyltransferase catalytic subunit; Provisional; Region: pyrB; PRK00856
216591015850	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
216591015851	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
216591015852	HMMPfam hit to PF00185, Aspartate/ornithine carbamoyltransferase, As, score 3.6e-22
216591015853	HMMPfam hit to PF02729, Aspartate/ornithine carbamoyltransferase, ca, score 7e-31
216591015854	PS00097 Aspartate and ornithine carbamoyltransferases signature.
216591015855	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591015856	active site
216591015857	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 2.6e-10
216591015858	Holliday junction resolvase-like protein; Reviewed; Region: PRK00109
216591015859	HMMPfam hit to PF03652, Uncharacterised protein family (UPF0081), score 6.9e-44
216591015860	hypothetical protein; Validated; Region: PRK00228
216591015861	HMMPfam hit to PF02622, Uncharacterized ACR, COG1678, score 1.5e-94
216591015862	Rubredoxin [Energy production and conversion]; Region: COG1773
216591015863	Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are...; Region: rubredoxin; cd00730
216591015864	iron binding site [ion binding]; other site
216591015865	HMMPfam hit to PF00301, Rubredoxin, score 4.1e-25
216591015866	PS00202 Rubredoxin signature.
216591015867	4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of...; Region: HMPP_kinase; cd01169
216591015868	dimer interface [polypeptide binding]; other site
216591015869	substrate binding site [chemical binding]; other site
216591015870	ATP binding site [chemical binding]; other site
216591015871	HMMPfam hit to PF08543, Phosphomethylpyrimidine kinase, score 2.3e-55
216591015872	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015873	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
216591015874	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
216591015875	ring oligomerisation interface [polypeptide binding]; other site
216591015876	ATP/Mg binding site [chemical binding]; other site
216591015877	stacking interactions; other site
216591015878	hinge regions; other site
216591015879	HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin family, score 1.5e-194
216591015880	PS00296 Chaperonins cpn60 signature.
216591015881	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
216591015882	oligomerisation interface [polypeptide binding]; other site
216591015883	mobile loop; other site
216591015884	roof hairpin; other site
216591015885	HMMPfam hit to PF00166, Chaperonin 10 Kd subunit, score 1.2e-51
216591015886	PS00681 Chaperonins cpn10 signature.
216591015887	Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins; Region: SRPBCC_6; cd07824
216591015888	putative hydrophobic ligand binding site [chemical binding]; other site
216591015889	Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]; Region: LolA; COG2834
216591015890	nitrous-oxide reductase, Sec-dependent; Region: nitrous_NosZ_Gp; TIGR04246
216591015891	Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]; Region: COG5662
216591015892	1 probable transmembrane helix predicted for BCAL3151 by TMHMM2.0 at aa 86-108
216591015893	RNA polymerase sigma factor; Provisional; Region: PRK12511
216591015894	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591015895	HMMPfam hit to PF04545, Sigma-70, region, score 3.3e-13
216591015896	HMMPfam hit to PF08281, Sigma-70, region, score 9.1e-19
216591015897	Predicted helix-turn-helix motif with score 1265.000, SD 3.50 at aa 122-143, sequence LSYRDAAQVLGVPVGTVMSRLA
216591015898	HMMPfam hit to PF04542, Sigma-70 region, score 5.5e-09
216591015899	Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640
216591015900	Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640
216591015901	HMMPfam hit to PF03640, Secreted repeat of unknown function, score 4.3e-18
216591015902	HMMPfam hit to PF03640, Secreted repeat of unknown function, score 3.9e-12
216591015903	1 probable transmembrane helix predicted for BCAL3154 by TMHMM2.0 at aa 29-51
216591015904	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591015905	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591015906	hydroxyglutarate oxidase; Provisional; Region: PRK11728
216591015907	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 8.5e-86
216591015908	PS00192 Cytochrome b/b6 heme-ligand signature.
216591015909	lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096
216591015910	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591015911	substrate binding pocket [chemical binding]; other site
216591015912	membrane-bound complex binding site; other site
216591015913	hinge residues; other site
216591015914	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 5e-84
216591015915	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591015916	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015917	Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]; Region: COG2423
216591015918	ornithine cyclodeaminase; Validated; Region: PRK06823; cl17400
216591015919	HMMPfam hit to PF02423, Ornithine cyclodeaminase/mu-crystalli, score 2.5e-11
216591015920	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2964
216591015921	YheO-like PAS domain; Region: PAS_6; pfam08348
216591015922	HTH domain; Region: HTH_22; pfam13309
216591015923	HMMPfam hit to PF08348, YheO-like protein, score 3.3e-49
216591015924	Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: FrnE; COG2761
216591015925	DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins; Region: DsbA_FrnE; cd03024
216591015926	catalytic residues [active]
216591015927	HMMPfam hit to PF01323, DSBA-like thioredoxin domain, score 1.1e-45
216591015928	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591015929	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591015930	putative substrate translocation pore; other site
216591015931	14 probable transmembrane helices predicted for BCAL3160 by TMHMM2.0 at aa 12-34, 49-68, 80-102, 112-131, 138-160, 166-188, 200-222, 227-249, 270-292, 302-324, 331-353, 363-385, 398-420 and 440-462
216591015932	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.7e-57
216591015933	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015934	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015935	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015936	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
216591015937	7 probable transmembrane helices predicted for BCAL3161 by TMHMM2.0 at aa 21-43, 53-75, 95-117, 127-145, 174-196, 234-256 and 263-280
216591015938	HMMPfam hit to PF01925, Domain of unknown function DUF81, score 1.3e-25
216591015939	Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins; Region: NT_KNTase_like; cd05403
216591015940	active site
216591015941	NTP binding site [chemical binding]; other site
216591015942	metal binding triad [ion binding]; metal-binding site
216591015943	antibiotic binding site [chemical binding]; other site
216591015944	HMMPfam hit to PF01909, Nucleotidyltransferase domain, score 0.00016
216591015945	Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]; Region: COG2939
216591015946	Serine carboxypeptidase; Region: Peptidase_S10; cl08270
216591015947	HMMPfam hit to PF00450, Serine carboxypeptidase, score 5.3e-06
216591015948	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015949	1 probable transmembrane helix predicted for BCAL3164 by TMHMM2.0 at aa 12-34
216591015950	3HB-oligomer hydrolase (3HBOH); Region: 3HBOH; pfam10605
216591015951	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015952	BON domain; Region: BON; pfam04972
216591015953	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 5.5e-13
216591015954	TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]; Region: Imp; COG2358
216591015955	TRAP transporter solute receptor, TAXI family; Region: TRAP_TAXI; TIGR02122
216591015956	2 probable transmembrane helices predicted for BCAL3167 by TMHMM2.0 at aa 21-43 and 349-371
216591015957	DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1; Region: DsbA_HCCA_Iso; cd03022
216591015958	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
216591015959	putative catalytic residue [active]
216591015960	HMMPfam hit to PF01323, DSBA-like thioredoxin domain, score 4.8e-14
216591015961	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591015962	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591015963	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591015964	dimerization interface [polypeptide binding]; other site
216591015965	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.5e-17
216591015966	Predicted helix-turn-helix motif with score 1376.000, SD 3.87 at aa 24-45, sequence RSVTQAALRLNQTQPAISTALR
216591015967	PS00044 Bacterial regulatory proteins, lysR family signature.
216591015968	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.2e-21
216591015969	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4460
216591015970	xanthine dehydrogenase accessory protein XdhC; Region: xanthine_xdhC; TIGR02964
216591015971	XdhC Rossmann domain; Region: XdhC_C; pfam13478
216591015972	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591015973	xanthine dehydrogenase, molybdopterin binding subunit; Region: xanthine_xdhB; TIGR02965
216591015974	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591015975	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591015976	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 3.7e-203
216591015977	HMMPfam hit to PF01315, Aldehyde oxidase and xanthine dehydroge, score 5.9e-46
216591015978	xanthine dehydrogenase, small subunit; Region: xanthine_xdhA; TIGR02963
216591015979	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591015980	catalytic loop [active]
216591015981	iron binding site [ion binding]; other site
216591015982	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591015983	CO dehydrogenase flavoprotein C-terminal domain; Region: CO_deh_flav_C; pfam03450
216591015984	HMMPfam hit to PF03450, CO dehydrogenase flavoprotein C-termina, score 9.4e-24
216591015985	HMMPfam hit to PF00941, FAD binding domain in molybdopterin deh, score 2.9e-66
216591015986	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 1.6e-42
216591015987	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591015988	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 0.012
216591015989	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591015990	major facilitator superfamily transporter; Provisional; Region: PRK05122
216591015991	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591015992	12 probable transmembrane helices predicted for BCAL3174 by TMHMM2.0 at aa 2-21, 31-53, 66-88, 103-125, 132-154, 159-181, 202-224, 234-253, 260-282, 292-314, 321-343 and 353-372
216591015993	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.8e-24
216591015994	EamA-like transporter family; Region: EamA; pfam00892
216591015995	EamA-like transporter family; Region: EamA; cl17759
216591015996	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.2e-10
216591015997	10 probable transmembrane helices predicted for BCAL3175 by TMHMM2.0 at aa 5-27, 32-51, 64-86, 90-112, 119-137, 147-169, 182-204, 214-236, 243-261 and 266-285
216591015998	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.2e-25
216591015999	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016000	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591016001	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591016002	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.6e-07
216591016003	Predicted helix-turn-helix motif with score 1247.000, SD 3.43 at aa 223-244, sequence LTLGELAEVAALSEYHFSRMFR
216591016004	PS00041 Bacterial regulatory proteins, araC family signature.
216591016005	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.2e-10
216591016006	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016007	Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]; Region: COG0075
216591016008	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591016009	catalytic residue [active]
216591016010	HMMPfam hit to PF00266, Aminotransferase class-V, score 8e-12
216591016011	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.
216591016012	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591016013	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591016014	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591016015	putative effector binding pocket; other site
216591016016	dimerization interface [polypeptide binding]; other site
216591016017	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-14
216591016018	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.8e-47
216591016019	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
216591016020	D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; Region: LDH_like_2; cd12183
216591016021	putative ligand binding site [chemical binding]; other site
216591016022	putative NAD binding site [chemical binding]; other site
216591016023	catalytic site [active]
216591016024	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 4.3e-40
216591016025	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 9.5e-80
216591016026	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016027	PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
216591016028	PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
216591016029	Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)...; Region: BluB; cd02145
216591016030	putative FMN binding site [chemical binding]; other site
216591016031	HMMPfam hit to PF00881, Nitroreductase family, score 7.1e-48
216591016032	MFS transport protein AraJ; Provisional; Region: PRK10091
216591016033	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591016034	putative substrate translocation pore; other site
216591016035	12 probable transmembrane helices predicted for BCAL3181 by TMHMM2.0 at aa 7-29, 39-61, 73-95, 99-121, 128-150, 160-179, 200-222, 237-259, 266-285, 289-311, 332-354 and 358-377
216591016036	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 8.9e-50
216591016037	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591016038	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591016039	putative substrate translocation pore; other site
216591016040	12 probable transmembrane helices predicted for BCAL3182 by TMHMM2.0 at aa 12-34, 44-66, 75-93, 98-120, 133-155, 160-179, 200-222, 237-259, 271-289, 293-315, 322-344 and 354-376
216591016041	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.3e-28
216591016042	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016043	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016044	fumarylacetoacetase; Region: PLN02856
216591016045	Domain of unknown function (DUF1969); Region: DUF1969; pfam09298
216591016046	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591016047	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 2e-85
216591016048	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016049	homogentisate 1,2-dioxygenase; Provisional; Region: PRK05341
216591016050	HMMPfam hit to PF04209, homogentisate 1,2-dioxygenase, score 7.9e-276
216591016051	benzoate transport; Region: 2A0115; TIGR00895
216591016052	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591016053	putative substrate translocation pore; other site
216591016054	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591016055	putative substrate translocation pore; other site
216591016056	HMMPfam hit to PF00083, Sugar (and other) transporter, score 2.1e-06
216591016057	12 probable transmembrane helices predicted for BCAL3185 by TMHMM2.0 at aa 19-41, 56-78, 85-107, 111-133, 145-167, 172-194, 254-276, 286-308, 315-337, 342-364, 377-399 and 409-431
216591016058	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.7e-53
216591016059	PS00217 Sugar transport proteins signature 2.
216591016060	PS00216 Sugar transport proteins signature 1.
216591016061	Protein of unknown function (DUF2783); Region: DUF2783; pfam10932
216591016062	FAD-dependent oxidoreductase; Provisional; Region: PRK08132
216591016063	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591016064	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591016065	HMMPfam hit to PF01494, FAD binding domain, score 2.8e-57
216591016066	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.1e-05
216591016067	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cl00290
216591016068	HMMPfam hit to PF00563, EAL domain, score 0.00057
216591016069	Uncharacterized conserved protein [Function unknown]; Region: COG3791
216591016070	HMMPfam hit to PF04828, Protein of unknown function (DUF636), score 3.8e-24
216591016071	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591016072	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591016073	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591016074	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 0.00027
216591016075	Predicted helix-turn-helix motif with score 1019.000, SD 2.66 at aa 37-58, sequence LGNRDFAERTGLPKATVNRLAY
216591016076	Glutaryl-CoA dehydrogenase; Region: GCD; cd01151
216591016077	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591016078	FAD binding site [chemical binding]; other site
216591016079	substrate binding pocket [chemical binding]; other site
216591016080	catalytic base [active]
216591016081	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal doma, score 2.2e-25
216591016082	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 3.2e-25
216591016083	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 4.7e-33
216591016084	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 2.6e-05
216591016085	PS00073 Acyl-CoA dehydrogenases signature 2.
216591016086	Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450
216591016087	Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by...; Region: PRX_1cys; cd03016
216591016088	dimer interface [polypeptide binding]; other site
216591016089	decamer (pentamer of dimers) interface [polypeptide binding]; other site
216591016090	catalytic triad [active]
216591016091	HMMPfam hit to PF00578, AhpC/TSA family, score 6.4e-87
216591016092	HMMPfam hit to PF08534, Redoxin, score 1.2e-07
216591016093	Bacterial protein of unknown function (DUF883); Region: DUF883; pfam05957
216591016094	HMMPfam hit to PF05957, Bacterial protein of unknown function (DUF88, score 6.6e-40
216591016095	Predicted membrane protein [Function unknown]; Region: COG5393
216591016096	2 probable transmembrane helices predicted for BCAL3194 by TMHMM2.0 at aa 47-69 and 79-98
216591016097	Protein of unknown function (DUF3318); Region: DUF3318; pfam11780
216591016098	Probable gene remnant. CDS contains a nonsense mutation (amber) after codon 59. Similar to Burkholderia pseudomallei putative fimbrial protein UniProt:Q63RC0 (EMBL:BX571965) (150 aa) fasta scores: E()=0.018, 33.628% id in 113 aa
216591016099	transcriptional regulator NrdR; Validated; Region: nrdR; PRK00464
216591016100	ATP cone domain; Region: ATP-cone; pfam03477
216591016101	HMMPfam hit to PF03477, ATP cone domain, score 3.1e-28
216591016102	serine hydroxymethyltransferase; Reviewed; Region: glyA; PRK00011
216591016103	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
216591016104	dimer interface [polypeptide binding]; other site
216591016105	active site
216591016106	glycine-pyridoxal phosphate binding site [chemical binding]; other site
216591016107	folate binding site [chemical binding]; other site
216591016108	HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase, major doma, score 0.074
216591016109	HMMPfam hit to PF00155, Aminotransferase class I and II, score 4.3e-05
216591016110	HMMPfam hit to PF00464, Serine hydroxymethyltransferase, score 3.5e-260
216591016111	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.0003
216591016112	PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.
216591016113	malonic semialdehyde reductase; Provisional; Region: PRK10538
216591016114	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591016115	NAD(P) binding site [chemical binding]; other site
216591016116	active site
216591016117	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.8e-24
216591016118	PS00061 Short-chain dehydrogenases/reductases family signature.
216591016119	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
216591016120	active site
216591016121	HMMPfam hit to PF03061, Thioesterase superfamily, score 6e-22
216591016122	TolQ protein; Region: tolQ; TIGR02796
216591016123	3 probable transmembrane helices predicted for BCAL3200 by TMHMM2.0 at aa 20-39, 131-153 and 173-195
216591016124	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 1.7e-50
216591016125	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
216591016126	TolR protein; Region: tolR; TIGR02801
216591016127	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 4.4e-22
216591016128	1 probable transmembrane helix predicted for BCAL3201 by TMHMM2.0 at aa 24-46
216591016129	TolA protein; Region: tolA_full; TIGR02794
216591016130	TonB C terminal; Region: TonB_2; pfam13103
216591016131	HMMPfam hit to PF06519, TolA protein, score 1.2e-08
216591016132	1 probable transmembrane helix predicted for BCAL3202 by TMHMM2.0 at aa 21-43
216591016133	translocation protein TolB; Provisional; Region: tolB; PRK02889
216591016134	TolB amino-terminal domain; Region: TolB_N; pfam04052
216591016135	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
216591016136	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
216591016137	HMMPfam hit to PF04052, TolB amino-terminal domain, score 7.9e-29
216591016138	HMMPfam hit to PF07676, WD40-like Beta Propeller Repeat, score 0.015
216591016139	HMMPfam hit to PF07676, WD40-like Beta Propeller Repeat, score 0.12
216591016140	HMMPfam hit to PF07676, WD40-like Beta Propeller Repeat, score 4.6e-11
216591016141	HMMPfam hit to PF07676, WD40-like Beta Propeller Repeat, score 1.1e-08
216591016142	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
216591016143	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591016144	ligand binding site [chemical binding]; other site
216591016145	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016146	HMMPfam hit to PF00691, OmpA family, score 2.7e-40
216591016147	PS01068 OmpA-like domain.
216591016148	tol-pal system protein YbgF; Region: tol_pal_ybgF; TIGR02795
216591016149	Tetratricopeptide repeat; Region: TPR_6; pfam13174
216591016150	1 probable transmembrane helix predicted for BCAL3205 by TMHMM2.0 at aa 7-29
216591016151	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591016152	non-specific DNA binding site [nucleotide binding]; other site
216591016153	salt bridge; other site
216591016154	sequence-specific DNA binding site [nucleotide binding]; other site
216591016155	Predicted helix-turn-helix motif with score 1069.000, SD 2.83 at aa 17-38, sequence LNQTELAALGGVQKHAQFQYEK
216591016156	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591016157	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591016158	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591016159	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-31
216591016160	Protein of unknown function (DUF3018); Region: DUF3018; pfam11455
216591016161	PemK-like protein; Region: PemK; pfam02452
216591016162	type IV secretion system T-DNA border endonuclease VirD2; Provisional; Region: PRK13863
216591016163	yiaA/B two helix domain; Region: YiaAB; pfam05360
216591016164	yiaA/B two helix domain; Region: YiaAB; pfam05360
216591016165	HMMPfam hit to PF05360, yiaA/B two helix domain, score 9.1e-20
216591016166	4 probable transmembrane helices predicted for BCAL3212 by TMHMM2.0 at aa 11-33, 43-62, 74-96 and 106-123
216591016167	HMMPfam hit to PF05360, yiaA/B two helix domain, score 9.2e-20
216591016168	Cupin; Region: Cupin_6; pfam12852
216591016169	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591016170	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591016171	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1e-07
216591016172	Predicted helix-turn-helix motif with score 1052.000, SD 2.77 at aa 227-248, sequence WTVESLGAAAAMSRATYARHFR
216591016173	Carboxymuconolactone decarboxylase family; Region: CMD; pfam02627
216591016174	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 6.2e-25
216591016175	ergothioneine biosynthesis protein EgtC; Region: TIGR03442
216591016176	Glutamine amidotransferases class-II (Gn-AT)_YafJ-type.  YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea.  YafJ has a conserved structural fold similar to those of other class II...; Region: YafJ; cd01908
216591016177	putative active site [active]
216591016178	putative dimer interface [polypeptide binding]; other site
216591016179	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 0.00031
216591016180	Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form...; Region: APSK; cd02027
216591016181	ligand-binding site [chemical binding]; other site
216591016182	HMMPfam hit to PF01583, Adenylylsulphate kinase, score 1.2e-88
216591016183	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016184	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591016185	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 0.00015
216591016186	pyridoxal phosphate-dependent acyltransferase, putative; Region: gly_Cac_T_rel; TIGR01825
216591016187	KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS); Region: KBL_like; cd06454
216591016188	substrate-cofactor binding pocket; other site
216591016189	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591016190	catalytic residue [active]
216591016191	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.1e-49
216591016192	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016193	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed; Region: PRK13187
216591016194	UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331
216591016195	HMMPfam hit to PF03331, UDP-3-O-acyl N-acetylglycosamine deacetylase, score 2.4e-37
216591016196	Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3321
216591016197	polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or...; Region: PKS; cd00833
216591016198	active site
216591016199	Acyl transferase domain in polyketide synthase (PKS) enzymes; Region: PKS_AT; smart00827
216591016200	Dehydratase domain in polyketide synthase (PKS) enzymes; Region: PKS_DH; smart00826
216591016201	Methyltransferase domain; Region: Methyltransf_23; pfam13489
216591016202	Methyltransferase domain; Region: Methyltransf_12; pfam08242
216591016203	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591016204	enoyl reductase of polyketide synthase; Region: enoyl_red; cd05195
216591016205	Enoylreductase; Region: PKS_ER; smart00829
216591016206	NAD(P) binding site [chemical binding]; other site
216591016207	beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 2, complex (x); Region: KR_2_FAS_SDR_x; cd08955
216591016208	KR domain; Region: KR; pfam08659
216591016209	putative NADP binding site [chemical binding]; other site
216591016210	active site
216591016211	Phosphopantetheine attachment site; Region: PKS_PP; smart00823
216591016212	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 6e-08
216591016213	PS00012 Phosphopantetheine attachment site.
216591016214	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.5e-73
216591016215	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 5.3e-38
216591016216	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like doma, score 2.3e-08
216591016217	HMMPfam hit to PF08242, Methyltransferase domain, score 1.6e-06
216591016218	HMMPfam hit to PF00698, Acyl transferase domain, score 4.1e-79
216591016219	HMMPfam hit to PF02801, Beta-ketoacyl synthase, C-terminal do, score 6.2e-75
216591016220	HMMPfam hit to PF00109, Beta-ketoacyl synthase, N-terminal do, score 6.8e-122
216591016221	PS00606 Beta-ketoacyl synthases active site.
216591016222	Sulfatase; Region: Sulfatase; cl17466
216591016223	HMMPfam hit to PF00884, Sulfatase, score 1.3e-46
216591016224	3 probable transmembrane helices predicted for BCAL3221 by TMHMM2.0 at aa 33-55, 100-122 and 135-154
216591016225	short chain dehydrogenase; Provisional; Region: PRK08251
216591016226	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591016227	NAD(P) binding site [chemical binding]; other site
216591016228	active site
216591016229	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.3e-16
216591016230	PS00061 Short-chain dehydrogenases/reductases family signature.
216591016231	CDS is interrupted by IS element insertion after codon 92. Similar to Burkholderia pseudomallei (Pseudomonas pseudomallei) putative capsule polysaccharide biosynthesis/export protein WcbO UniProt:Q63R81 (EMBL:BX571965) (400 aa) fasta scores: E()=1.3e-121, 72.431% id in 399 aa
216591016232	HMMPfam hit to PF05159, Capsule polysaccharide biosynthesis pro, score 5e-105
216591016233	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591016234	Transposase; Region: HTH_Tnp_1; pfam01527
216591016235	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591016236	GAGA binding protein-like family; Region: GAGA_bind; pfam06217
216591016237	GAGA binding protein-like family; Region: GAGA_bind; pfam06217
216591016238	GAGA binding protein-like family; Region: GAGA_bind; pfam06217
216591016239	PS01067 Protein secE/sec61-gamma signature.
216591016240	Malate/L-lactate dehydrogenase; Region: Ldh_2; cl00900
216591016241	FkbH-like domain; Region: FkbH; TIGR01686
216591016242	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591016243	active site
216591016244	motif I; other site
216591016245	motif II; other site
216591016246	GDSL-like Lipase/Acylhydrolase family; Region: Lipase_GDSL_2; pfam13472
216591016247	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
216591016248	Predicted glycosyltransferases [General function prediction only]; Region: COG1216
216591016249	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
216591016250	active site
216591016251	HMMPfam hit to PF00535, Glycosyl transferase family, score 1.5e-09
216591016252	UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]; Region: Glf; COG0562
216591016253	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591016254	UDP-galactopyranose mutase; Region: GLF; pfam03275
216591016255	HMMPfam hit to PF03275, UDP-galactopyranose mutase, score 4.3e-106
216591016256	Transposase; Region: HTH_Tnp_1; pfam01527
216591016257	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591016258	HMMPfam hit to PF01527, Transposase, score 4.1e-08
216591016259	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
216591016260	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591016261	HMMPfam hit to PF05717, IS66 Orf2 like protein, score 5.2e-37
216591016262	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
216591016263	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591016264	putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; pfam13005
216591016265	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
216591016266	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
216591016267	HMMPfam hit to PF03050, Transposase IS66 family, score 1.6e-73
216591016268	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591016269	Glycosyl transferases group 1; Region: Glyco_trans_1_4; pfam13692
216591016270	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
216591016271	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
216591016272	active site
216591016273	HMMPfam hit to PF00535, Glycosyl transferase family, score 9.9e-41
216591016274	PS00327 Bacterial rhodopsins retinal binding site.
216591016275	ATP-binding cassette component of polysaccharide transport system; Region: ABC_KpsT_Wzt; cd03220
216591016276	Vi polysaccharide export ATP-binding protein VexC; Provisional; Region: PRK15177
216591016277	Walker A/P-loop; other site
216591016278	ATP binding site [chemical binding]; other site
216591016279	Q-loop/lid; other site
216591016280	ABC transporter signature motif; other site
216591016281	Walker B; other site
216591016282	D-loop; other site
216591016283	H-loop/switch region; other site
216591016284	HMMPfam hit to PF00005, ABC transporter, score 2.1e-17
216591016285	PS00211 ABC transporters family signature.
216591016286	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016287	ABC-2 type transporter; Region: ABC2_membrane; cl17235
216591016288	6 probable transmembrane helices predicted for BCAL3241 by TMHMM2.0 at aa 37-59, 64-83, 117-139, 149-171, 183-205 and 236-258
216591016289	HMMPfam hit to PF01061, ABC-2 type transporter, score 0.0003
216591016290	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591016291	polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family; Region: BexC_CtrB_KpsE; TIGR01010
216591016292	2 probable transmembrane helices predicted for BCAL3242 by TMHMM2.0 at aa 7-29 and 340-362
216591016293	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591016294	polysaccharide export protein Wza; Provisional; Region: PRK15078
216591016295	Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563
216591016296	HMMPfam hit to PF02563, Polysaccharide biosynthesis/export protei, score 7e-14
216591016297	This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the...; Region: GT1_mtfB_like; cd03809
216591016298	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591016299	HMMPfam hit to PF00534, Glycosyl transferases group, score 3.8e-09
216591016300	Capsule polysaccharide biosynthesis protein; Region: Capsule_synth; pfam05159
216591016301	Capsule polysaccharide biosynthesis protein; Region: Capsule_synth; pfam05159
216591016302	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591016303	HMMPfam hit to PF05159, Capsule polysaccharide biosynthesis pro, score 5.2e-106
216591016304	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Region: GMP_PMI; TIGR01479
216591016305	GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase; cd02509
216591016306	Substrate binding site; other site
216591016307	Mannose-6-phosphate isomerase; Region: MannoseP_isomer; pfam01050
216591016308	HMMPfam hit to PF00483, Nucleotidyl transferase, score 5.7e-110
216591016309	HMMPfam hit to PF01050, Mannose-6-phosphate isomerase, score 1.1e-122
216591016310	HMMPfam hit to PF07883, Cupin domain, score 2.7e-10
216591016311	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
216591016312	Mechanosensitive ion channel; Region: MS_channel; pfam00924
216591016313	3 probable transmembrane helices predicted for BCAL3247 by TMHMM2.0 at aa 10-32, 61-83 and 88-110
216591016314	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 5e-37
216591016315	HMMPfam hit to PF00665, Integrase core domain, score 3.8e-43
216591016316	CDS is interrupted by IS element insertion after codon 231. Similar to Ralstonia solanacearum (Pseudomonas solanacearum) ISRso8-transposase OrfB protein. UniProt:Q8XEM0 (EMBL:AL646052) (296 aa) fasta scores: E()=4.5e-110, 87.162% id in 296 aa
216591016317	HMMPfam hit to PF00665, Integrase core domain, score 1.3e-44
216591016318	Transposase, Mutator family; Region: Transposase_mut; pfam00872
216591016319	MULE transposase domain; Region: MULE; pfam10551
216591016320	HMMPfam hit to PF00872, Transposase, Mutator family, score 3.1e-164
216591016321	PS01007 Transposases, Mutator family, signature.
216591016322	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591016323	Transposase; Region: HTH_Tnp_1; pfam01527
216591016324	HMMPfam hit to PF01527, Transposase, score 1.6e-20
216591016325	HMMPfam hit to PF04218, CENP-B N-terminal DNA-binding domain, score 0.00072
216591016326	Predicted helix-turn-helix motif with score 1874.000, SD 5.57 at aa 25-46, sequence QRVAVVARELGISEQTLRNWVK
216591016327	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591016328	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591016329	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591016330	HMMPfam hit to PF01527, Transposase, score 0.003
216591016331	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
216591016332	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
216591016333	5 probable transmembrane helices predicted for BCAL3255 by TMHMM2.0 at aa 27-49, 69-91, 130-149, 159-181 and 188-210
216591016334	DNA mismatch repair protein; Reviewed; Region: mutL; PRK00095
216591016335	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591016336	ATP binding site [chemical binding]; other site
216591016337	Mg2+ binding site [ion binding]; other site
216591016338	G-X-G motif; other site
216591016339	MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL.  EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family.  This transducer domain is homologous to the second...; Region: MutL_Trans_MutL; cd03482
216591016340	ATP binding site [chemical binding]; other site
216591016341	MutL C terminal dimerisation domain; Region: MutL_C; pfam08676
216591016342	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and, score 7.9e-09
216591016343	PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature.
216591016344	HMMPfam hit to PF01119, DNA mismatch repair protein, C-termina, score 9.6e-32
216591016345	Predicted helix-turn-helix motif with score 1067.000, SD 2.82 at aa 633-654, sequence MEATERADQCNHGRPTWYQLTL
216591016346	tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed; Region: miaA; PRK00091
216591016347	tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]; Region: MiaA; COG0324
216591016348	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016349	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016350	HMMPfam hit to PF01715, IPP transferase, score 1.9e-116
216591016351	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591016352	Tetracyclin repressor, C-terminal all-alpha domain; Region: TetR_C; pfam02909
216591016353	HMMPfam hit to PF02909, Tetracyclin repressor, C-terminal all-alpha, score 4.8e-38
216591016354	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591016355	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 2.7e-18
216591016356	PS01081 Bacterial regulatory proteins, tetR family signature.
216591016357	Predicted helix-turn-helix motif with score 1965.000, SD 5.88 at aa 18-39, sequence LSTRKLAERLGVQSPTLYWHFR
216591016358	CDS contains a frameshift mutation after codon 313. Similar to Escherichia coli tetracycline resistance protein, class C TetA SWALL:TCR3_ECOLI (SWALL:P02981) (396 aa) fasta scores: E(): 1e-72, 55.55% id in 387 aa
216591016359	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.2e-49
216591016360	Ketosteroid isomerase homolog [Function unknown]; Region: COG4319
216591016361	phosphoribosylaminoimidazole synthetase; Provisional; Region: PRK05385
216591016362	PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis; Region: PurM; cd02196
216591016363	dimerization interface [polypeptide binding]; other site
216591016364	putative ATP binding site [chemical binding]; other site
216591016365	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 1.5e-49
216591016366	HMMPfam hit to PF00586, AIR synthase related protein, N-terminal dom, score 3.8e-70
216591016367	DnaA regulatory inactivator Hda; Validated; Region: PRK08903
216591016368	ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]; Region: DnaA; COG0593
216591016369	HMMPfam hit to PF00308, Bacterial dnaA protein, score 3.7e-05
216591016370	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
216591016371	haloacid dehalogenase-like hydrolase; Region: HAD; cl17202
216591016372	poly(A) polymerase; Region: pcnB; TIGR01942
216591016373	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
216591016374	active site
216591016375	NTP binding site [chemical binding]; other site
216591016376	metal binding triad [ion binding]; metal-binding site
216591016377	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
216591016378	Polymerase A arginine-rich C-terminus; Region: PolyA_pol_arg_C; pfam12626
216591016379	HMMPfam hit to PF01743, Poly A polymerase family, score 3.5e-54
216591016380	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483
216591016381	catalytic center binding site [active]
216591016382	ATP binding site [chemical binding]; other site
216591016383	HMMPfam hit to PF01288, 7,8-dihydro-6-hydroxymethylpterin-pyrophosph, score 3e-45
216591016384	PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature.
216591016385	Deoxynucleoside kinases [Nucleotide transport and metabolism]; Region: COG1428
216591016386	Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1; Region: dNK; cd01673
216591016387	Substrate-binding site [chemical binding]; other site
216591016388	Substrate specificity [chemical binding]; other site
216591016389	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016390	HMMPfam hit to PF01712, Deoxynucleoside kinase, score 1.7e-11
216591016391	Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557
216591016392	oligomerization interface [polypeptide binding]; other site
216591016393	active site
216591016394	metal binding site [ion binding]; metal-binding site
216591016395	HMMPfam hit to PF02548, Ketopantoate hydroxymethyltransferase, score 1.6e-135
216591016396	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016397	chorismate binding enzyme; Region: Chorismate_bind; cl10555
216591016398	Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]; Region: TrpE; COG0147
216591016399	PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and...; Region: PLPDE_IV; cl00224
216591016400	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
216591016401	homodimer interface [polypeptide binding]; other site
216591016402	substrate-cofactor binding pocket; other site
216591016403	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591016404	catalytic residue [active]
216591016405	HMMPfam hit to PF00425, chorismate binding enzyme, score 1.3e-75
216591016406	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016407	chaperone protein DnaJ; Provisional; Region: PRK10767
216591016408	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
216591016409	HSP70 interaction site [polypeptide binding]; other site
216591016410	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
216591016411	Zn binding sites [ion binding]; other site
216591016412	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
216591016413	dimer interface [polypeptide binding]; other site
216591016414	HMMPfam hit to PF01556, DnaJ C terminal region, score 4.6e-77
216591016415	HMMPfam hit to PF00684, DnaJ central domain (4 repeats), score 5.8e-44
216591016416	PS00190 Cytochrome c family heme-binding site signature.
216591016417	PS00637 CXXCXGXG dnaJ domain signature.
216591016418	PS00190 Cytochrome c family heme-binding site signature.
216591016419	HMMPfam hit to PF00226, DnaJ domain, score 1.4e-37
216591016420	PS00636 Nt-dnaJ domain signature.
216591016421	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
216591016422	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
216591016423	nucleotide binding site [chemical binding]; other site
216591016424	HMMPfam hit to PF00012, Hsp70 protein, score 0
216591016425	PS01036 Heat shock hsp70 proteins family signature 3.
216591016426	PS00329 Heat shock hsp70 proteins family signature 2.
216591016427	PS00297 Heat shock hsp70 proteins family signature 1.
216591016428	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
216591016429	catalytic residues [active]
216591016430	GrpE; Region: GrpE; pfam01025
216591016431	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
216591016432	dimer interface [polypeptide binding]; other site
216591016433	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
216591016434	HMMPfam hit to PF01025, GrpE, score 3.5e-56
216591016435	PS01071 grpE protein signature.
216591016436	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
216591016437	RNA binding surface [nucleotide binding]; other site
216591016438	HMMPfam hit to PF01479, S4 domain, score 6.8e-11
216591016439	ferrochelatase; Reviewed; Region: hemH; PRK00035
216591016440	Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411
216591016441	C-terminal domain interface [polypeptide binding]; other site
216591016442	active site
216591016443	Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419
216591016444	active site
216591016445	N-terminal domain interface [polypeptide binding]; other site
216591016446	HMMPfam hit to PF00762, Ferrochelatase, score 1.1e-116
216591016447	PS00534 Ferrochelatase signature.
216591016448	heat-inducible transcription repressor; Provisional; Region: hrcA; PRK00082
216591016449	Winged helix-turn-helix transcription repressor, HrcA DNA-binding; Region: HrcA_DNA-bdg; pfam03444
216591016450	HMMPfam hit to PF01628, HrcA protein C terminal domain, score 8.6e-54
216591016451	NAD(+)/NADH kinase family protein; Provisional; Region: ppnK; PRK02155
216591016452	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK02231
216591016453	HMMPfam hit to PF01513, ATP-NAD kinase, score 5e-58
216591016454	ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: RecN; COG0497
216591016455	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
216591016456	Walker A/P-loop; other site
216591016457	ATP binding site [chemical binding]; other site
216591016458	Q-loop/lid; other site
216591016459	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
216591016460	ABC transporter signature motif; other site
216591016461	Walker B; other site
216591016462	D-loop; other site
216591016463	H-loop/switch region; other site
216591016464	HMMPfam hit to PF02463, RecF/RecN/SMC N terminal domain, score 7.9e-10
216591016465	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016466	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed; Region: PRK11072
216591016467	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
216591016468	metal binding triad; other site
216591016469	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335
216591016470	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
216591016471	metal binding triad; other site
216591016472	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335
216591016473	HMMPfam hit to PF03710, Glutamate-ammonia ligase adenylyltransferase, score 3.1e-79
216591016474	HMMPfam hit to PF03710, Glutamate-ammonia ligase adenylyltransferase, score 2.1e-72
216591016475	TIGR02099 family protein; Region: TIGR02099
216591016476	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
216591016477	1 probable transmembrane helix predicted for BCAL3279 by TMHMM2.0 at aa 32-54
216591016478	nitrilase; Region: PLN02798
216591016479	Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases); Region: nit; cd07572
216591016480	putative active site [active]
216591016481	catalytic triad [active]
216591016482	dimer interface [polypeptide binding]; other site
216591016483	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, score 1.8e-46
216591016484	protease TldD; Provisional; Region: tldD; PRK10735
216591016485	HMMPfam hit to PF01523, Putative modulator of DNA gyrase, score 2.4e-88
216591016486	phospho-2-dehydro-3-deoxyheptonate aldolase; Validated; Region: PRK09261
216591016487	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
216591016488	HMMPfam hit to PF00793, DAHP synthetase I family, score 2.1e-161
216591016489	Antitoxin Phd_YefM, type II toxin-antitoxin system; Region: PhdYeFM_antitox; pfam02604
216591016490	PIN domain of the VapC-like Sll0205 protein and homologs; Region: PIN_Sll0205; cd09872
216591016491	putative active site [active]
216591016492	HMMPfam hit to PF01850, PIN domain, score 6.5e-07
216591016493	bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional; Region: PRK13289
216591016494	Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen...; Region: globin; cd01040
216591016495	heme-binding site [chemical binding]; other site
216591016496	FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The...; Region: flavohem_like_fad_nad_binding; cd06184
216591016497	FAD binding pocket [chemical binding]; other site
216591016498	FAD binding motif [chemical binding]; other site
216591016499	phosphate binding motif [ion binding]; other site
216591016500	beta-alpha-beta structure motif; other site
216591016501	NAD binding pocket [chemical binding]; other site
216591016502	Heme binding  pocket [chemical binding]; other site
216591016503	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 2.8e-15
216591016504	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 3.6e-05
216591016505	HMMPfam hit to PF00042, Globin, score 1.1e-18
216591016506	Cobalamin adenosyltransferase; Region: Cob_adeno_trans; cl00920
216591016507	HMMPfam hit to PF01923, Cobalamin adenosyltransferase, score 9.5e-86
216591016508	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
216591016509	FAD binding domain; Region: FAD_binding_4; pfam01565
216591016510	HMMPfam hit to PF01565, FAD binding domain, score 2.1e-54
216591016511	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 1.4e-75
216591016512	glycolate oxidase subunit GlcD; Provisional; Region: PRK11230
216591016513	FAD binding domain; Region: FAD_binding_4; pfam01565
216591016514	HMMPfam hit to PF01565, FAD binding domain, score 1.8e-54
216591016515	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 1.9e-75
216591016516	glycolate oxidase FAD binding subunit; Provisional; Region: glcE; PRK11282
216591016517	FAD binding domain; Region: FAD_binding_4; pfam01565
216591016518	HMMPfam hit to PF01565, FAD binding domain, score 1.7e-22
216591016519	glycolate oxidase iron-sulfur subunit; Provisional; Region: glcF; PRK11274
216591016520	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
216591016521	Cysteine-rich domain; Region: CCG; pfam02754
216591016522	Cysteine-rich domain; Region: CCG; pfam02754
216591016523	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0019
216591016524	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591016525	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0018
216591016526	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591016527	HMMPfam hit to PF02754, Cysteine-rich domain, score 1.2e-07
216591016528	HMMPfam hit to PF02754, Cysteine-rich domain, score 1.8e-09
216591016529	Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins; Region: PLPDE_III_Yggs_like; cd06824
216591016530	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
216591016531	catalytic residue [active]
216591016532	HMMPfam hit to PF01168, Alanine racemase, N-terminal domain, score 1.7e-32
216591016533	PS01211 Uncharacterized protein family UPF0001 signature.
216591016534	pyrroline-5-carboxylate reductase; Reviewed; Region: PRK11880
216591016535	pyrroline-5-carboxylate reductase; Region: PLN02688
216591016536	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 0.00053
216591016537	HMMPfam hit to PF03807, NADP oxidoreductase coenzyme F420-depe, score 3.6e-59
216591016538	PS00521 Delta 1-pyrroline-5-carboxylate reductase signature.
216591016539	Transposase; Region: HTH_Tnp_1; pfam01527
216591016540	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591016541	HMMPfam hit to PF01527, Transposase, score 1.2e-10
216591016542	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591016543	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
216591016544	HMMPfam hit to PF05717, IS66 Orf2 like protein, score 3.2e-62
216591016545	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
216591016546	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591016547	putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; pfam13005
216591016548	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
216591016549	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
216591016550	HMMPfam hit to PF03050, Transposase IS66 family, score 1.1e-99
216591016551	4-hydroxybenzoate octaprenyltransferase; Reviewed; Region: ubiA; PRK12848
216591016552	UbiA prenyltransferase family; Region: UbiA; pfam01040
216591016553	7 probable transmembrane helices predicted for BCAL3296 by TMHMM2.0 at aa 28-45, 101-123, 143-165, 169-188, 212-234, 244-261 and 273-295
216591016554	HMMPfam hit to PF01040, UbiA prenyltransferase family, score 5.1e-59
216591016555	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016556	PS00943 UbiA prenyltransferase family signature.
216591016557	DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]; Region: Dps; COG0783
216591016558	DPS protein, ferritin-like diiron-binding domain; Region: DPS; cd01043
216591016559	dimerization interface [polypeptide binding]; other site
216591016560	DPS ferroxidase diiron center [ion binding]; other site
216591016561	ion pore; other site
216591016562	HMMPfam hit to PF00210, Ferritin-like domain, score 1.3e-33
216591016563	PS00819 Dps protein family signature 2.
216591016564	PS00818 Dps protein family signature 1.
216591016565	catalase/hydroperoxidase HPI(I); Provisional; Region: PRK15061
216591016566	N-terminal catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_1; cd00649
216591016567	dimer interface [polypeptide binding]; other site
216591016568	active site
216591016569	heme binding site [chemical binding]; other site
216591016570	C-terminal non-catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_2; cd08200
216591016571	HMMPfam hit to PF00141, Peroxidase, score 4.2e-120
216591016572	HMMPfam hit to PF00141, Peroxidase, score 5e-96
216591016573	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016574	PS00435 Peroxidases proximal heme-ligand signature.
216591016575	PS00436 Peroxidases active site signature.
216591016576	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591016577	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591016578	The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_OxyR; cd08411
216591016579	dimerization interface [polypeptide binding]; other site
216591016580	HMMPfam hit to PF03466, LysR substrate binding domain, score 3e-49
216591016581	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-16
216591016582	PS00044 Bacterial regulatory proteins, lysR family signature.
216591016583	Predicted helix-turn-helix motif with score 1707.000, SD 5.00 at aa 16-37, sequence RHFGRAAEACFVSQPTLSVAIK
216591016584	ATP-dependent DNA helicase RecG; Provisional; Region: PRK10917
216591016585	RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a...; Region: RecG_wedge_OBF; cd04488
216591016586	ssDNA binding site; other site
216591016587	generic binding surface II; other site
216591016588	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591016589	ATP binding site [chemical binding]; other site
216591016590	putative Mg++ binding site [ion binding]; other site
216591016591	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591016592	nucleotide binding region [chemical binding]; other site
216591016593	ATP-binding site [chemical binding]; other site
216591016594	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 4.7e-19
216591016595	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 1.4e-33
216591016596	PS00435 Peroxidases proximal heme-ligand signature.
216591016597	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016598	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 0.00063
216591016599	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional; Region: queA; PRK00147
216591016600	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Region: queA; TIGR00113
216591016601	HMMPfam hit to PF02547, Queuosine biosynthesis protein, score 5.7e-87
216591016602	queuine tRNA-ribosyltransferase; Provisional; Region: tgt; PRK00112
216591016603	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
216591016604	HMMPfam hit to PF01702, Queuine tRNA-ribosyltransferase, score 2.8e-125
216591016605	preprotein translocase subunit YajC; Validated; Region: yajC; PRK05585
216591016606	1 probable transmembrane helix predicted for BCAL3305 by TMHMM2.0 at aa 15-37
216591016607	HMMPfam hit to PF02699, Preprotein translocase subunit, score 1.3e-36
216591016608	SecD export protein N-terminal TM region; Region: SecD-TM1; pfam13721
216591016609	preprotein translocase subunit SecD; Reviewed; Region: secD; PRK05812
216591016610	SecD/SecF GG Motif; Region: Sec_GG; pfam07549
216591016611	protein-export membrane protein, SecD/SecF family; Region: 2A0604s01; TIGR00916
216591016612	6 probable transmembrane helices predicted for BCAL3306 by TMHMM2.0 at aa 7-29, 447-469, 471-493, 497-519, 540-562 and 572-594
216591016613	HMMPfam hit to PF07549, SecD/SecF GG Motif, score 0.00082
216591016614	HMMPfam hit to PF02355, Protein export membrane protein, score 3.5e-07
216591016615	preprotein translocase subunit SecF; Reviewed; Region: secF; PRK13022
216591016616	SecD/SecF GG Motif; Region: Sec_GG; pfam07549
216591016617	Protein export membrane protein; Region: SecD_SecF; pfam02355
216591016618	6 probable transmembrane helices predicted for BCAL3307 by TMHMM2.0 at aa 17-39, 133-155, 160-182, 186-208, 248-266 and 270-292
216591016619	HMMPfam hit to PF07549, SecD/SecF GG Motif, score 1.4e-05
216591016620	HMMPfam hit to PF02355, Protein export membrane protein, score 7.9e-72
216591016621	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
216591016622	protein binding site [polypeptide binding]; other site
216591016623	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
216591016624	Active site serine [active]
216591016625	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 0.001
216591016626	HMMPfam hit to PF03572, Peptidase family S41, score 1.3e-41
216591016627	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
216591016628	citrate-proton symporter; Provisional; Region: PRK15075
216591016629	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591016630	putative substrate translocation pore; other site
216591016631	HMMPfam hit to PF00083, Sugar (and other) transporter, score 6.7e-08
216591016632	10 probable transmembrane helices predicted for BCAL3309 by TMHMM2.0 at aa 19-41, 61-83, 90-112, 190-209, 240-259, 274-296, 303-324, 334-356, 369-391 and 401-418
216591016633	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.8e-19
216591016634	PS00216 Sugar transport proteins signature 1.
216591016635	Uncharacterized conserved protein [Function unknown]; Region: COG2353
216591016636	HMMPfam hit to PF04264, YceI like family, score 2e-41
216591016637	YceI-like domain; Region: YceI; smart00867
216591016638	HMMPfam hit to PF04264, YceI like family, score 1.8e-32
216591016639	Cytochrome B561 [Energy production and conversion]; Region: CybB; COG3038
216591016640	HMMPfam hit to PF01292, Cytochrome b561 family, score 1.4e-49
216591016641	4 probable transmembrane helices predicted for BCAL3312 by TMHMM2.0 at aa 15-37, 57-74, 94-116 and 149-166
216591016642	Paraquat-inducible protein A; Region: PqiA; pfam04403
216591016643	HMMPfam hit to PF04403, Paraquat-inducible protein A, score 4.9e-45
216591016644	4 probable transmembrane helices predicted for BCAL3313 by TMHMM2.0 at aa 47-66, 96-118, 139-161 and 166-188
216591016645	Paraquat-inducible protein A; Region: PqiA; pfam04403
216591016646	HMMPfam hit to PF04403, Paraquat-inducible protein A, score 8.3e-80
216591016647	4 probable transmembrane helices predicted for BCAL3314 by TMHMM2.0 at aa 47-66, 95-117, 141-160 and 164-186
216591016648	Paraquat-inducible protein B [General function prediction only]; Region: PqiB; COG3008
216591016649	mce related protein; Region: MCE; pfam02470
216591016650	mce related protein; Region: MCE; pfam02470
216591016651	2 probable transmembrane helices predicted for BCAL3315 by TMHMM2.0 at aa 24-46 and 122-141
216591016652	HMMPfam hit to PF02470, mce related protein, score 2.7e-25
216591016653	HMMPfam hit to PF02470, mce related protein, score 0.00061
216591016654	HMMPfam hit to PF02470, mce related protein, score 3.8e-15
216591016655	Protein of unknown function (DUF330); Region: DUF330; pfam03886
216591016656	1 probable transmembrane helix predicted for BCAL3316 by TMHMM2.0 at aa 7-29
216591016657	HMMPfam hit to PF03886, Protein of unknown function (DUF330), score 1.6e-06
216591016658	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016659	Site-specific recombinase; Region: SpecificRecomb; pfam10136
216591016660	6 probable transmembrane helices predicted for BCAL3317 by TMHMM2.0 at aa 375-397, 407-429, 471-493, 513-535, 579-601 and 633-655
216591016661	Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]; Region: COG0116
216591016662	THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Region: THUMP_AdoMetMT; cd11715
216591016663	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
216591016664	HMMPfam hit to PF02926, THUMP domain, score 8e-11
216591016665	HMMPfam hit to PF01170, Putative RNA methylase family UPF0020, score 3.6e-49
216591016666	PS00092 N-6 Adenine-specific DNA methylases signature.
216591016667	Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain; Region: SRPBCC_CalC_Aha1-like_GntR-HTH; cd08893
216591016668	putative hydrophobic ligand binding site [chemical binding]; other site
216591016669	HMMPfam hit to PF08327, Activator of Hsp90 ATPase homolog 1-like pro, score 4.3e-11
216591016670	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591016671	dimerization interface [polypeptide binding]; other site
216591016672	putative DNA binding site [nucleotide binding]; other site
216591016673	putative Zn2+ binding site [ion binding]; other site
216591016674	HMMPfam hit to PF08279, HTH domain, score 0.00074
216591016675	HMMPfam hit to PF01022, Bacterial regulatory protein, arsR family, score 8.6e-07
216591016676	Predicted helix-turn-helix motif with score 1428.000, SD 4.05 at aa 26-47, sequence QTLSELCDGLAMSRQAVSKHLA
216591016677	N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains; Region: SgaA_N_like; cd07247
216591016678	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591016679	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 0.0048
216591016680	Predicted transcriptional regulator [Transcription]; Region: COG2378
216591016681	HTH domain; Region: HTH_11; pfam08279
216591016682	WYL domain; Region: WYL; pfam13280
216591016683	HMMPfam hit to PF08279, HTH domain, score 8.7e-18
216591016684	Predicted helix-turn-helix motif with score 1959.000, SD 5.86 at aa 21-42, sequence TTAQQLADWLSVSPRTVYRDVR
216591016685	Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases); Region: nitrilases_CHs; cd07564
216591016686	Predicted amidohydrolase [General function prediction only]; Region: COG0388
216591016687	putative active site [active]
216591016688	catalytic triad [active]
216591016689	putative dimer interface [polypeptide binding]; other site
216591016690	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, score 7.2e-50
216591016691	PS00921 Nitrilases / cyanide hydratase active site signature.
216591016692	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591016693	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591016694	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_like_2; cd08464
216591016695	putative substrate binding pocket [chemical binding]; other site
216591016696	putative dimerization interface [polypeptide binding]; other site
216591016697	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.5e-19
216591016698	Predicted helix-turn-helix motif with score 1163.000, SD 3.15 at aa 24-45, sequence GGASRAALRLDLTQSAVSAALG
216591016699	PS00044 Bacterial regulatory proteins, lysR family signature.
216591016700	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.5e-13
216591016701	NAD/NADP transhydrogenase beta subunit [Energy production and conversion]; Region: PntB; COG1282
216591016702	NAD(P) transhydrogenase beta subunit; Region: PNTB; pfam02233
216591016703	HMMPfam hit to PF02233, NAD(P) transhydrogenase beta subunit, score 5.3e-260
216591016704	8 probable transmembrane helices predicted for BCAL3325 by TMHMM2.0 at aa 4-21, 34-53, 63-85, 97-116, 143-165, 185-204, 209-231 and 252-274
216591016705	Domain of unknown function (DUF3814); Region: DUF3814; pfam12769
216591016706	3 probable transmembrane helices predicted for BCAL3326 by TMHMM2.0 at aa 4-26, 39-61 and 65-84
216591016707	Rubrum transdehydrogenase NAD-binding and catalytic domains; Region: Rubrum_tdh; cd05304
216591016708	NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]; Region: PntA; COG3288
216591016709	ligand binding site [chemical binding]; other site
216591016710	homodimer interface [polypeptide binding]; other site
216591016711	NAD(P) binding site [chemical binding]; other site
216591016712	trimer interface B [polypeptide binding]; other site
216591016713	trimer interface A [polypeptide binding]; other site
216591016714	HMMPfam hit to PF01262, Alanine dehydrogenase/PNT, C-terminal dom, score 2.3e-79
216591016715	HMMPfam hit to PF05222, Alanine dehydrogenase/PNT, N-terminal dom, score 1.3e-48
216591016716	Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes...; Region: Nudix_Hydrolase_2; cd03675
216591016717	nudix motif; other site
216591016718	HMMPfam hit to PF00293, NUDIX domain, score 1.3e-14
216591016719	PS00893 mutT domain signature.
216591016720	Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; Region: TrmU; COG0482
216591016721	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
216591016722	HMMPfam hit to PF03054, tRNA methyl transferase, score 1.6e-192
216591016723	PS00070 Aldehyde dehydrogenases cysteine active site.
216591016724	Glutamate synthase domain 2 [Amino acid transport and metabolism]; Region: GltB; COG0069
216591016725	Glutamate synthase (GltS) FMN-binding domain.  GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast...; Region: GltS_FMN; cd02808
216591016726	active site
216591016727	FMN binding site [chemical binding]; other site
216591016728	substrate binding site [chemical binding]; other site
216591016729	3Fe-4S cluster binding site [ion binding]; other site
216591016730	1 probable transmembrane helix predicted for BCAL3330 by TMHMM2.0 at aa 21-43
216591016731	HMMPfam hit to PF01645, Conserved region in glutamate synthase, score 2.2e-81
216591016732	PS00881 Protein splicing signature.
216591016733	putative glutathione S-transferase; Provisional; Region: PRK10357
216591016734	GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_N_3; cd03049
216591016735	putative C-terminal domain interface [polypeptide binding]; other site
216591016736	putative GSH binding site (G-site) [chemical binding]; other site
216591016737	putative dimer interface [polypeptide binding]; other site
216591016738	C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases; Region: GST_C_6; cd03205
216591016739	dimer interface [polypeptide binding]; other site
216591016740	N-terminal domain interface [polypeptide binding]; other site
216591016741	putative substrate binding pocket (H-site) [chemical binding]; other site
216591016742	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 8.7e-05
216591016743	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 7.9e-08
216591016744	Aminopeptidase P, N-terminal domain; Region: AMP_N; pfam05195
216591016745	proline aminopeptidase P II; Provisional; Region: PRK10879
216591016746	Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on...; Region: Prolidase; cd01087
216591016747	active site
216591016748	HMMPfam hit to PF05195, Aminopeptidase P, N-terminal domain, score 2.3e-39
216591016749	HMMPfam hit to PF00557, metallopeptidase family M24, score 4.4e-80
216591016750	PS00491 Aminopeptidase P and proline dipeptidase signature.
216591016751	hypothetical protein; Provisional; Region: PRK06996
216591016752	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591016753	HMMPfam hit to PF01494, FAD binding domain, score 7.9e-08
216591016754	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00051
216591016755	PS01304 ubiH/COQ6 monooxygenase family signature.
216591016756	tRNA-dihydrouridine synthase B; Provisional; Region: PRK10415
216591016757	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
216591016758	FMN binding site [chemical binding]; other site
216591016759	active site
216591016760	catalytic residues [active]
216591016761	substrate binding site [chemical binding]; other site
216591016762	HMMPfam hit to PF01207, Dihydrouridine synthase (Dus), score 1.8e-127
216591016763	PS01136 Uncharacterized protein family UPF0034 signature.
216591016764	Predicted helix-turn-helix motif with score 976.000, SD 2.51 at aa 158-179, sequence ITVARLAEAAGISMLTVHGRTR
216591016765	DNA-binding protein Fis; Provisional; Region: PRK01905
216591016766	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis family, score 1.5e-12
216591016767	Predicted helix-turn-helix motif with score 1686.000, SD 4.93 at aa 51-72, sequence GNQSLAAEYLGINRNTLRKKLQ
216591016768	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional; Region: purH; PRK00881
216591016769	Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal  ATIC formylase domain that formylates...; Region: IMPCH; cd01421
216591016770	purine monophosphate binding site [chemical binding]; other site
216591016771	dimer interface [polypeptide binding]; other site
216591016772	putative catalytic residues [active]
216591016773	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; smart00798
216591016774	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; cl03362
216591016775	HMMPfam hit to PF02142, MGS-like domain, score 2.5e-68
216591016776	HMMPfam hit to PF01808, AICARFT/IMPCHase bienzyme, score 1.8e-164
216591016777	PS00095 C-5 cytosine-specific DNA methylases C-terminal signature.
216591016778	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD...; Region: RuvC_resolvase; cd00529
216591016779	active site
216591016780	putative DNA-binding cleft [nucleotide binding]; other site
216591016781	dimer interface [polypeptide binding]; other site
216591016782	HMMPfam hit to PF02075, Crossover junction endodeoxyribonuclease Ruv, score 6.3e-68
216591016783	Holliday junction DNA helicase RuvA; Reviewed; Region: ruvA; PRK00116
216591016784	RuvA N terminal domain; Region: RuvA_N; pfam01330
216591016785	RuvA, C-terminal domain; Region: RuvA_C; pfam07499
216591016786	HMMPfam hit to PF01330, RuvA N terminal domain, score 1.3e-31
216591016787	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591016788	HMMPfam hit to PF00633, Helix-hairpin-helix motif, score 0.0063
216591016789	HMMPfam hit to PF07499, RuvA, C-terminal domain, score 5.5e-11
216591016790	Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080
216591016791	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591016792	Walker A motif; other site
216591016793	ATP binding site [chemical binding]; other site
216591016794	Walker B motif; other site
216591016795	arginine finger; other site
216591016796	Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491
216591016797	HMMPfam hit to PF05496, Holliday junction DNA helicase ruvB N-termin, score 1.1e-28
216591016798	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.1e-31
216591016799	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 1.4e-05
216591016800	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016801	HMMPfam hit to PF05491, Holliday junction DNA helicase ruvB C-termin, score 2.9e-53
216591016802	Uncharacterized protein conserved in bacteria (DUF2236); Region: DUF2236; cl01472
216591016803	Putative ParB-like nuclease; Region: ParBc_2; cl17538
216591016804	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016805	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
216591016806	catalytic core [active]
216591016807	HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 1.9e-55
216591016808	D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not...; Region: Dtyr_deacylase; cd00563
216591016809	putative active site [active]
216591016810	dimerization interface [polypeptide binding]; other site
216591016811	putative tRNAtyr binding site [nucleotide binding]; other site
216591016812	HMMPfam hit to PF02580, D-Tyr-tRNA(Tyr) deacylase, score 5.9e-62
216591016813	tyrosyl-tRNA synthetase; Validated; Region: PRK05912
216591016814	catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805
216591016815	active site
216591016816	HIGH motif; other site
216591016817	dimer interface [polypeptide binding]; other site
216591016818	KMSKS motif; other site
216591016819	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
216591016820	RNA binding surface [nucleotide binding]; other site
216591016821	HMMPfam hit to PF01479, S4 domain, score 9.7e-05
216591016822	HMMPfam hit to PF00579, tRNA synthetases class I (W and Y), score 3.5e-99
216591016823	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591016824	anhydro-N-acetylmuramic acid kinase; Reviewed; Region: anmK; PRK09585
216591016825	HMMPfam hit to PF03702, Uncharacterised protein family (UPF0075), score 1.5e-152
216591016826	iron-sulfur cluster insertion protein ErpA; Provisional; Region: PRK13623
216591016827	PS01152 Hypothetical hesB/yadR/yfhF family signature.
216591016828	HMMPfam hit to PF01521, Iron-sulphur cluster biosynthesis, score 5.5e-39
216591016829	30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132
216591016830	HMMPfam hit to PF00380, Ribosomal protein S9/S16, score 1.7e-58
216591016831	PS00360 Ribosomal protein S9 signature.
216591016832	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
216591016833	23S rRNA interface [nucleotide binding]; other site
216591016834	L3 interface [polypeptide binding]; other site
216591016835	HMMPfam hit to PF00572, Ribosomal protein L13, score 1.2e-71
216591016836	OsmC-like protein; Region: OsmC; cl00767
216591016837	HMMPfam hit to PF02566, OsmC-like protein, score 5.5e-27
216591016838	Protein of unknown function (DUF3025); Region: DUF3025; pfam11227
216591016839	Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is...; Region: DHOase; cd01294
216591016840	active site
216591016841	substrate binding pocket [chemical binding]; other site
216591016842	dimer interface [polypeptide binding]; other site
216591016843	HMMPfam hit to PF01979, Amidohydrolase family, score 1.1e-63
216591016844	PS00483 Dihydroorotase signature 2.
216591016845	PS00482 Dihydroorotase signature 1.
216591016846	Predicted glutamine amidotransferase [General function prediction only]; Region: COG0121
216591016847	Glutamine amidotransferases class-II (Gn-AT)_YafJ-type.  YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea.  YafJ has a conserved structural fold similar to those of other class II...; Region: YafJ; cd01908
216591016848	putative dimer interface [polypeptide binding]; other site
216591016849	putative active site [active]
216591016850	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 2.3e-12
216591016851	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
216591016852	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
216591016853	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
216591016854	Autotransporter beta-domain; Region: Autotransporter; smart00869
216591016855	HMMPfam hit to PF03212, Pertactin, score 9.9e-07
216591016856	HMMPfam hit to PF03797, Autotransporter beta-domain, score 4.7e-24
216591016857	CDS contains a frameshift after codon 152. Similar to Escherichia coli glutamate/aspartate transport ATP-binding protein GltL UniProt:P0AAG3 (EMBL:EC10981) (241 aa) fasta scores: E()=3e-63, 82.988% id in 241 aa
216591016858	HMMPfam hit to PF00005, ABC transporter, score 3.3e-61
216591016859	PS00211 ABC transporters family signature.
216591016860	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016861	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591016862	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591016863	dimer interface [polypeptide binding]; other site
216591016864	conserved gate region; other site
216591016865	putative PBP binding loops; other site
216591016866	ABC-ATPase subunit interface; other site
216591016867	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.7e-31
216591016868	5 probable transmembrane helices predicted for BCAL3356 by TMHMM2.0 at aa 26-48, 61-83, 93-115, 155-177 and 197-219
216591016869	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591016870	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591016871	dimer interface [polypeptide binding]; other site
216591016872	conserved gate region; other site
216591016873	putative PBP binding loops; other site
216591016874	ABC-ATPase subunit interface; other site
216591016875	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.1e-34
216591016876	4 probable transmembrane helices predicted for BCAL3357 by TMHMM2.0 at aa 32-54, 67-89, 104-126 and 211-233
216591016877	glutamate and aspartate transporter subunit; Provisional; Region: PRK10797
216591016878	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591016879	substrate binding pocket [chemical binding]; other site
216591016880	membrane-bound complex binding site; other site
216591016881	hinge residues; other site
216591016882	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 9.3e-56
216591016883	Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Region: GdhA; COG0334
216591016884	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Region: ELFV_dehydrog_N; pfam02812
216591016885	NAD(P) binding domain of glutamate dehydrogenase, subgroup 1; Region: NAD_bind_1_Glu_DH; cd01076
216591016886	NAD(P) binding site [chemical binding]; other site
216591016887	HMMPfam hit to PF00208, Glutamate/Leucine/Phenylalanine/Valin, score 9.6e-122
216591016888	HMMPfam hit to PF02812, Glu/Leu/Phe/Val dehydrogenase, dimeri, score 1e-67
216591016889	PS00074 Glu / Leu / Phe / Val dehydrogenases active site.
216591016890	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591016891	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591016892	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591016893	dimerization interface [polypeptide binding]; other site
216591016894	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.1e-15
216591016895	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-16
216591016896	PS00044 Bacterial regulatory proteins, lysR family signature.
216591016897	Predicted helix-turn-helix motif with score 1273.000, SD 3.52 at aa 16-37, sequence RSFSRSAELRHVSQPAFSRRIQ
216591016898	adenylosuccinate lyase; Provisional; Region: PRK09285
216591016899	PurB_like adenylosuccinases (adenylsuccinate lyase, ASL); Region: PurB; cd01598
216591016900	tetramer interface [polypeptide binding]; other site
216591016901	active site
216591016902	HMMPfam hit to PF00206, Lyase, score 1.1e-66
216591016903	PS00163 Fumarate lyases signature.
216591016904	HMMPfam hit to PF08328, Adenylosuccinate lyase C-terminal, score 2.3e-91
216591016905	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591016906	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591016907	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.5e-62
216591016908	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591016909	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591016910	Tetracyclin repressor, C-terminal all-alpha domain; Region: TetR_C; pfam02909
216591016911	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 1.1e-10
216591016912	Predicted helix-turn-helix motif with score 1043.000, SD 2.74 at aa 50-71, sequence FSVRKLAQSVGCDPMSVLYHFK
216591016913	HMMPfam hit to PF02909, Tetracyclin repressor, C-terminal all-alpha, score 0.00011
216591016914	Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits; Region: GntK; cd02021
216591016915	ATP-binding site [chemical binding]; other site
216591016916	Gluconate-6-phosphate binding site [chemical binding]; other site
216591016917	Shikimate kinase; Region: SKI; pfam01202
216591016918	HMMPfam hit to PF01202, Shikimate kinase, score 7.8e-14
216591016919	PS00017 ATP/GTP-binding site motif A (P-loop).
216591016920	fructuronate transporter; Provisional; Region: PRK10034; cl15264
216591016921	GntP family permease; Region: GntP_permease; pfam02447
216591016922	12 probable transmembrane helices predicted for BCAL3365 by TMHMM2.0 at aa 7-25, 29-48, 60-79, 107-129, 142-161, 181-203, 232-254, 269-291, 304-326, 364-386, 393-415 and 430-452
216591016923	HMMPfam hit to PF02447, GntP family permease, score 3e-218
216591016924	HMMPfam hit to PF03600, Citrate transporter, score 1.7e-05
216591016925	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016926	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; Provisional; Region: PRK05718
216591016927	KDPG and KHG aldolase; Region: KDPG_aldolase; cd00452
216591016928	active site
216591016929	intersubunit interface [polypeptide binding]; other site
216591016930	catalytic residue [active]
216591016931	HMMPfam hit to PF01081, KDPG and KHG aldolase, score 3e-74
216591016932	PS00160 KDPG and KHG aldolases Schiff-base forming residue.
216591016933	PS00159 KDPG and KHG aldolases active site.
216591016934	phosphogluconate dehydratase; Validated; Region: PRK09054
216591016935	6-phosphogluconate dehydratase; Region: edd; TIGR01196
216591016936	HMMPfam hit to PF00920, Dehydratase family, score 1.2e-264
216591016937	PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2.
216591016938	PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1.
216591016939	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
216591016940	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591016941	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
216591016942	putative active site [active]
216591016943	HMMPfam hit to PF01418, Helix-turn-helix domain, rpiR family, score 2.7e-30
216591016944	Predicted helix-turn-helix motif with score 1373.000, SD 3.86 at aa 33-54, sequence LAMTELSTRAGVSQPTIARFCQ
216591016945	HMMPfam hit to PF01380, SIS domain, score 4.2e-25
216591016946	Uncharacterized protein family (UPF0093); Region: UPF0093; cl00863
216591016947	HMMPfam hit to PF03653, Uncharacterised protein family (UPF0093), score 1.1e-32
216591016948	4 probable transmembrane helices predicted for BCAL3369 by TMHMM2.0 at aa 10-32, 53-75, 80-102 and 115-137
216591016949	Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; Region: ALDH_F18-19_ProA-GPR; cd07079
216591016950	gamma-glutamyl phosphate reductase; Region: proA; TIGR00407
216591016951	putative catalytic cysteine [active]
216591016952	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 4.9e-09
216591016953	PS01223 Gamma-glutamyl phosphate reductase signature.
216591016954	DNA polymerase III subunit delta; Reviewed; Region: holA; PRK05574
216591016955	DNA polymerase III, delta subunit; Region: DNA_pol3_delta; pfam06144
216591016956	HMMPfam hit to PF06144, DNA polymerase III, delta subunit, score 2.7e-41
216591016957	Lipopolysaccharide-assembly; Region: LptE; cl01125
216591016958	HMMPfam hit to PF04390, Rare lipoprotein B family, score 8.9e-08
216591016959	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016960	leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390
216591016961	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
216591016962	HIGH motif; other site
216591016963	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
216591016964	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
216591016965	active site
216591016966	KMSKS motif; other site
216591016967	Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958
216591016968	tRNA binding surface [nucleotide binding]; other site
216591016969	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
216591016970	HMMPfam hit to PF08264, Anticodon-binding domain, score 1.8e-11
216591016971	HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 6.3e-13
216591016972	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591016973	TolR protein; Region: tolR; TIGR02801
216591016974	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
216591016975	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 3.3e-17
216591016976	1 probable transmembrane helix predicted for BCAL3374 by TMHMM2.0 at aa 20-42
216591016977	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
216591016978	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 2.5e-42
216591016979	3 probable transmembrane helices predicted for BCAL3375 by TMHMM2.0 at aa 15-37, 128-150 and 174-196
216591016980	dihydrodipicolinate reductase; Provisional; Region: PRK00048
216591016981	Dihydrodipicolinate reductase, N-terminus; Region: DapB_N; pfam01113
216591016982	Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173
216591016983	HMMPfam hit to PF05173, Dihydrodipicolinate reductase, C-termin, score 2.4e-78
216591016984	PS01298 Dihydrodipicolinate reductase signature.
216591016985	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Ross, score 0.00064
216591016986	HMMPfam hit to PF03447, Homoserine dehydrogenase, NAD binding d, score 0.0038
216591016987	Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]; Region: OlmA; COG2913
216591016988	SmpA / OmlA family; Region: SmpA_OmlA; pfam04355
216591016989	HMMPfam hit to PF04355, SmpA / OmlA family, score 6.2e-41
216591016990	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591016991	ferric uptake regulator; Provisional; Region: fur; PRK09462
216591016992	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
216591016993	metal binding site 2 [ion binding]; metal-binding site
216591016994	putative DNA binding helix; other site
216591016995	metal binding site 1 [ion binding]; metal-binding site
216591016996	dimer interface [polypeptide binding]; other site
216591016997	structural Zn2+ binding site [ion binding]; other site
216591016998	HMMPfam hit to PF01475, Ferric uptake regulator family, score 1.7e-66
216591016999	ureidoglycolate hydrolase; Provisional; Region: PRK13395
216591017000	Ureidoglycolate hydrolase [Nucleotide transport and metabolism]; Region: DAL3; COG3194
216591017001	HMMPfam hit to PF04115, Ureidoglycolate hydrolase, score 6.4e-107
216591017002	allantoicase; Provisional; Region: PRK13257
216591017003	Allantoicase repeat; Region: Allantoicase; pfam03561
216591017004	Allantoicase repeat; Region: Allantoicase; pfam03561
216591017005	HMMPfam hit to PF03561, Allantoicase repeat, score 2e-67
216591017006	HMMPfam hit to PF03561, Allantoicase repeat, score 1.6e-77
216591017007	C4-dicarboxylate transporter DctA; Reviewed; Region: PRK13027
216591017008	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
216591017009	8 probable transmembrane helices predicted for BCAL3381 by TMHMM2.0 at aa 7-29, 44-63, 76-98, 150-167, 184-206, 219-241, 351-373 and 379-401
216591017010	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 1.2e-135
216591017011	PS00713 Sodium:dicarboxylate symporter family signature 1.
216591017012	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591017013	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591017014	DNA-binding site [nucleotide binding]; DNA binding site
216591017015	FCD domain; Region: FCD; pfam07729
216591017016	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 3.3e-18
216591017017	PS00043 Bacterial regulatory proteins, gntR family signature.
216591017018	HMMPfam hit to PF07729, FCD domain, score 1.7e-19
216591017019	DNA-binding transcriptional regulator CynR; Provisional; Region: PRK11242
216591017020	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591017021	The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold; Region: PBP2_CynR; cd08425
216591017022	dimerization interface [polypeptide binding]; other site
216591017023	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.5e-54
216591017024	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.6e-26
216591017025	PS00044 Bacterial regulatory proteins, lysR family signature.
216591017026	Predicted helix-turn-helix motif with score 2158.000, SD 6.54 at aa 28-49, sequence RSFTRAADALHVSQPTLSQQVR
216591017027	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591017028	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591017029	putative substrate translocation pore; other site
216591017030	12 probable transmembrane helices predicted for BCAL3384 by TMHMM2.0 at aa 19-41, 51-73, 80-99, 104-126, 138-160, 164-186, 215-237, 252-274, 279-301, 311-333, 340-362 and 367-389
216591017031	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.3e-32
216591017032	L-idonate 5-dehydrogenase; Provisional; Region: PRK09880
216591017033	L-idonate 5-dehydrogenase; Region: idonate-5-DH; cd08232
216591017034	putative NAD(P) binding site [chemical binding]; other site
216591017035	catalytic Zn binding site [ion binding]; other site
216591017036	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 4.9e-33
216591017037	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 7.7e-47
216591017038	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591017039	gluconate 5-dehydrogenase; Provisional; Region: PRK07523
216591017040	gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Region: Ga5DH-like_SDR_c; cd05347
216591017041	NADP binding site [chemical binding]; other site
216591017042	homodimer interface [polypeptide binding]; other site
216591017043	active site
216591017044	HMMPfam hit to PF00106, short chain dehydrogenase, score 1e-35
216591017045	PS00061 Short-chain dehydrogenases/reductases family signature.
216591017046	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
216591017047	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591017048	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591017049	dimerization interface [polypeptide binding]; other site
216591017050	substrate binding pocket [chemical binding]; other site
216591017051	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.3e-20
216591017052	Predicted helix-turn-helix motif with score 1051.000, SD 2.77 at aa 16-37, sequence LHFGRAAQRLFIVQPALSMQIK
216591017053	PS00044 Bacterial regulatory proteins, lysR family signature.
216591017054	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.1e-44
216591017055	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]; Region: GapA; COG0057
216591017056	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; smart00846
216591017057	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
216591017058	HMMPfam hit to PF02800, Glyceraldehyde 3-phosphate dehydrogenase, C-, score 1.6e-97
216591017059	PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.
216591017060	HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate dehydrogenase, NA, score 7.7e-99
216591017061	transketolase; Reviewed; Region: PRK12753
216591017062	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
216591017063	TPP-binding site [chemical binding]; other site
216591017064	dimer interface [polypeptide binding]; other site
216591017065	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
216591017066	PYR/PP interface [polypeptide binding]; other site
216591017067	dimer interface [polypeptide binding]; other site
216591017068	TPP binding site [chemical binding]; other site
216591017069	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
216591017070	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 1.8e-11
216591017071	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 3.2e-59
216591017072	HMMPfam hit to PF00456, Transketolase, thiamine diphosphate b, score 1.2e-231
216591017073	PS00801 Transketolase signature 1.
216591017074	spermidine synthase; Provisional; Region: PRK00811
216591017075	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591017076	HMMPfam hit to PF01564, Spermine/spermidine synthase, score 1.3e-51
216591017077	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_8; cd07246
216591017078	putative dimer interface [polypeptide binding]; other site
216591017079	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591017080	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 2.7e-20
216591017081	PS00192 Cytochrome b/b6 heme-ligand signature.
216591017082	16S ribosomal RNA methyltransferase RsmE; Provisional; Region: PRK11713
216591017083	HMMPfam hit to PF04452, Protein of unknown function (DUF558), score 3.1e-89
216591017084	Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor...; Region: Barstar_evA4336-like; cd05141
216591017085	putative RNAase interaction site [polypeptide binding]; other site
216591017086	RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential  for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate...; Region: RNase_Sa; cd00607
216591017087	active site
216591017088	barstar interaction site; other site
216591017089	HMMPfam hit to PF00545, ribonuclease, score 4.7e-15
216591017090	1 probable transmembrane helix predicted for BCAL3394 by TMHMM2.0 at aa 13-35
216591017091	malic enzyme; Reviewed; Region: PRK12862
216591017092	Malic enzyme, N-terminal domain; Region: malic; pfam00390
216591017093	NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311
216591017094	putative NAD(P) binding site [chemical binding]; other site
216591017095	Phosphotransacetylase [Energy production and conversion]; Region: Pta; COG0280
216591017096	HMMPfam hit to PF01515, Phosphate acetyl/butaryl transferase, score 1.5e-119
216591017097	HMMPfam hit to PF03949, Malic enzyme, NAD binding domain, score 2.6e-124
216591017098	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017099	HMMPfam hit to PF00390, Malic enzyme, N-terminal domain, score 9e-70
216591017100	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017101	thiamine monophosphate kinase; Provisional; Region: PRK05731
216591017102	ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the...; Region: ThiL; cd02194
216591017103	ATP binding site [chemical binding]; other site
216591017104	dimerization interface [polypeptide binding]; other site
216591017105	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 0.00042
216591017106	Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism; Region: PgpA; cd06971
216591017107	tetramer interfaces [polypeptide binding]; other site
216591017108	binuclear metal-binding site [ion binding]; other site
216591017109	HMMPfam hit to PF04608, Phosphatidylglycerophosphatase A, score 8.3e-46
216591017110	4 probable transmembrane helices predicted for BCAL3397 by TMHMM2.0 at aa 39-61, 74-91, 111-133 and 154-176
216591017111	Competence-damaged protein; Region: CinA; pfam02464
216591017112	HMMPfam hit to PF02464, Competence-damaged protein, score 8.3e-77
216591017113	Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase...; Region: OMP_decarboxylase_like; cd04725
216591017114	active site
216591017115	dimer interface [polypeptide binding]; other site
216591017116	HMMPfam hit to PF00215, Orotidine 5'-phosphate decarboxylase / HUMP, score 1e-35
216591017117	PS00156 Orotidine 5'-phosphate decarboxylase active site.
216591017118	aldose 1-epimerase, similar to Escherichia coli YphB; Region: Aldose_epim_Ec_YphB; cd09021
216591017119	active site
216591017120	catalytic residues [active]
216591017121	HMMPfam hit to PF01263, Aldose 1-epimerase, score 7.8e-30
216591017122	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
216591017123	classical (c) SDRs; Region: SDR_c; cd05233
216591017124	NAD(P) binding site [chemical binding]; other site
216591017125	active site
216591017126	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.2e-20
216591017127	PS00061 Short-chain dehydrogenases/reductases family signature.
216591017128	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591017129	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591017130	TM-ABC transporter signature motif; other site
216591017131	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 7e-67
216591017132	8 probable transmembrane helices predicted for BCAL3403 by TMHMM2.0 at aa 36-53, 63-85, 90-109, 113-135, 142-161, 181-203, 233-255 and 287-309
216591017133	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017134	L-arabinose transporter ATP-binding protein; Provisional; Region: araG; PRK11288
216591017135	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591017136	Walker A/P-loop; other site
216591017137	ATP binding site [chemical binding]; other site
216591017138	Q-loop/lid; other site
216591017139	ABC transporter signature motif; other site
216591017140	Walker B; other site
216591017141	D-loop; other site
216591017142	H-loop/switch region; other site
216591017143	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591017144	HMMPfam hit to PF00005, ABC transporter, score 1.4e-10
216591017145	PS00211 ABC transporters family signature.
216591017146	HMMPfam hit to PF00005, ABC transporter, score 5.2e-54
216591017147	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017148	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
216591017149	Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily; Region: PBP1_arabinose_binding; cd01540
216591017150	ligand binding site [chemical binding]; other site
216591017151	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 1.2e-48
216591017152	short chain dehydrogenase; Provisional; Region: PRK07063
216591017153	classical (c) SDRs; Region: SDR_c; cd05233
216591017154	NAD(P) binding site [chemical binding]; other site
216591017155	active site
216591017156	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.3e-31
216591017157	PS00061 Short-chain dehydrogenases/reductases family signature.
216591017158	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed; Region: PRK09140
216591017159	KDPG and KHG aldolase; Region: KDPG_aldolase; cd00452
216591017160	active site
216591017161	intersubunit interface [polypeptide binding]; other site
216591017162	catalytic residue [active]
216591017163	HMMPfam hit to PF01081, KDPG and KHG aldolase, score 2.5e-11
216591017164	2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]; Region: DgoK; COG3734
216591017165	2-keto-3-deoxy-galactonokinase; Region: DGOK; pfam05035
216591017166	HMMPfam hit to PF05035, 2-keto-3-deoxy-galactonokinase, score 3.9e-53
216591017167	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591017168	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591017169	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591017170	Predicted helix-turn-helix motif with score 1050.000, SD 2.76 at aa 277-298, sequence REARAISAELGWSPPQGTRRIK
216591017171	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 3.2e-15
216591017172	Predicted helix-turn-helix motif with score 1050.000, SD 2.76 at aa 60-81, sequence RDMRAIGAALGTTRSTTHRLVS
216591017173	EF-hand domain pair; Region: EF_hand_5; pfam13499
216591017174	1 probable transmembrane helix predicted for BCAL3410 by TMHMM2.0 at aa 5-27
216591017175	Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]; Region: COG2939
216591017176	Serine carboxypeptidase; Region: Peptidase_S10; cl08270
216591017177	HMMPfam hit to PF00450, Serine carboxypeptidase, score 5.2e-06
216591017178	monofunctional biosynthetic peptidoglycan transglycosylase; Provisional; Region: mtgA; PRK00056
216591017179	Transglycosylase; Region: Transgly; cl17702
216591017180	HMMPfam hit to PF00912, Transglycosylase, score 3.2e-65
216591017181	1 probable transmembrane helix predicted for BCAL3412 by TMHMM2.0 at aa 13-35
216591017182	shikimate 5-dehydrogenase; Reviewed; Region: aroE; PRK00258
216591017183	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
216591017184	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
216591017185	shikimate binding site; other site
216591017186	NAD(P) binding site [chemical binding]; other site
216591017187	HMMPfam hit to PF01488, Shikimate / quinate 5-dehydrogenase, score 1.7e-15
216591017188	HMMPfam hit to PF08501, Shikimate dehydrogenase substrate bind, score 2.1e-33
216591017189	Exoribonuclease R [Transcription]; Region: VacB; COG0557
216591017190	RNB domain; Region: RNB; pfam00773
216591017191	HMMPfam hit to PF00773, RNB-like protein, score 5.1e-15
216591017192	Uncharacterized protein family (UPF0227); Region: UPF0227; cl14886
216591017193	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591017194	HMMPfam hit to PF05728, Uncharacterised protein family (UPF0227), score 3.3e-75
216591017195	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Region: mpl; TIGR01081
216591017196	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
216591017197	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
216591017198	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
216591017199	HMMPfam hit to PF02875, Mur ligase family, glutamate ligase doma, score 8.7e-06
216591017200	HMMPfam hit to PF08245, Mur ligase middle domain, score 4.7e-20
216591017201	HMMPfam hit to PF01225, Mur ligase family, catalytic domain, score 1.6e-27
216591017202	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
216591017203	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591017204	catalytic residues [active]
216591017205	1 probable transmembrane helix predicted for BCAL3418 by TMHMM2.0 at aa 7-29
216591017206	HMMPfam hit to PF08534, Redoxin, score 1e-31
216591017207	PS00194 Thioredoxin family active site.
216591017208	Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466
216591017209	Dehydroquinase class II; Region: DHquinase_II; pfam01220
216591017210	active site
216591017211	trimer interface [polypeptide binding]; other site
216591017212	dimer interface [polypeptide binding]; other site
216591017213	HMMPfam hit to PF01220, Dehydroquinase class II, score 1.8e-87
216591017214	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated; Region: PRK06302
216591017215	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
216591017216	carboxyltransferase (CT) interaction site; other site
216591017217	biotinylation site [posttranslational modification]; other site
216591017218	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 4.5e-37
216591017219	PS00188 Biotin-requiring enzymes attachment site.
216591017220	acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591
216591017221	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
216591017222	Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; pfam02786
216591017223	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
216591017224	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 4.3e-52
216591017225	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase,, score 0.00023
216591017226	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 1.6e-113
216591017227	PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
216591017228	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591017229	HMMPfam hit to PF02785, Biotin carboxylase C-terminal domain, score 5.4e-63
216591017230	Ribosomal protein L11 methyltransferase (PrmA); Region: PrmA; pfam06325
216591017231	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
216591017232	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591017233	S-adenosylmethionine binding site [chemical binding]; other site
216591017234	HMMPfam hit to PF06325, Ribosomal protein L11 methyltransfera, score 9.3e-139
216591017235	HMMPfam hit to PF05175, Methyltransferase small domain, score 5.4e-05
216591017236	HMMPfam hit to PF08241, Methyltransferase domain, score 5e-09
216591017237	HMMPfam hit to PF08242, Methyltransferase domain, score 2.5e-08
216591017238	MJ0042 family finger-like domain; Region: MJ0042_CXXC; TIGR02098
216591017239	Protein of unknown function (DUF3426); Region: DUF3426; pfam11906
216591017240	PS00190 Cytochrome c family heme-binding site signature.
216591017241	1 probable transmembrane helix predicted for BCAL3423 by TMHMM2.0 at aa 310-332
216591017242	Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a...; Region: PRX_Atyp2cys; cd03014
216591017243	dimer interface [polypeptide binding]; other site
216591017244	catalytic triad [active]
216591017245	peroxidatic and resolving cysteines [active]
216591017246	HMMPfam hit to PF08534, Redoxin, score 2.8e-45
216591017247	PS01265 Tpx family signature.
216591017248	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591017249	Ribokinase-like subgroup A.  Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily.  Its oligomerization state is unknown at this time; Region: ribokinase_group_A; cd01942
216591017250	substrate binding site [chemical binding]; other site
216591017251	ATP binding site [chemical binding]; other site
216591017252	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 6.1e-33
216591017253	Glycine zipper 2TM domain; Region: Rick_17kDa_Anti; cl10470
216591017254	1 probable transmembrane helix predicted for BCAL3426 by TMHMM2.0 at aa 7-29
216591017255	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017256	HMMPfam hit to PF05433, Rickettsia 17 kDa surface antigen, score 4.3e-07
216591017257	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
216591017258	dimer interface [polypeptide binding]; other site
216591017259	putative radical transfer pathway; other site
216591017260	diiron center [ion binding]; other site
216591017261	tyrosyl radical; other site
216591017262	HMMPfam hit to PF00268, Ribonucleotide reductase, small chain, score 5.1e-30
216591017263	1 probable transmembrane helix predicted for BCAL3428 by TMHMM2.0 at aa 240-262
216591017264	ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK07207
216591017265	ATP cone domain; Region: ATP-cone; pfam03477
216591017266	Class I ribonucleotide reductase; Region: RNR_I; cd01679
216591017267	active site
216591017268	dimer interface [polypeptide binding]; other site
216591017269	catalytic residues [active]
216591017270	effector binding site; other site
216591017271	R2 peptide binding site; other site
216591017272	HMMPfam hit to PF02867, Ribonucleotide reductase, barrel doma, score 9.6e-177
216591017273	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017274	PS00089 Ribonucleotide reductase large subunit signature.
216591017275	HMMPfam hit to PF00317, Ribonucleotide reductase, all-alpha d, score 4.3e-27
216591017276	HMMPfam hit to PF03477, ATP cone domain, score 9.2e-23
216591017277	N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: ampD; COG3023
216591017278	Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20...; Region: PGRP; cd06583
216591017279	amidase catalytic site [active]
216591017280	Zn binding residues [ion binding]; other site
216591017281	substrate binding site [chemical binding]; other site
216591017282	HMMPfam hit to PF01510, N-acetylmuramoyl-L-alanine amidase, score 1.5e-55
216591017283	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591017284	Cytochrome C assembly protein; Region: Cytochrom_C_asm; cl00504
216591017285	HMMPfam hit to PF01578, Cytochrome C assembly protein, score 9.6e-18
216591017286	8 probable transmembrane helices predicted for BCAL3432 by TMHMM2.0 at aa 4-21, 50-72, 76-98, 110-132, 142-164, 202-224, 239-256 and 269-288
216591017287	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591017288	signal recognition particle protein; Provisional; Region: PRK10867
216591017289	SRP54-type protein, helical bundle domain; Region: SRP54_N; smart00963
216591017290	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
216591017291	P loop; other site
216591017292	GTP binding site [chemical binding]; other site
216591017293	Signal peptide binding domain; Region: SRP_SPB; pfam02978
216591017294	HMMPfam hit to PF02881, SRP54-type protein, helical bundle domain, score 2.2e-28
216591017295	HMMPfam hit to PF00448, SRP54-type protein, GTPase domain, score 1.9e-108
216591017296	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017297	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591017298	HMMPfam hit to PF02978, Signal peptide binding domain, score 2.8e-40
216591017299	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591017300	active site
216591017301	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 7.2e-15
216591017302	1 probable transmembrane helix predicted for BCAL3434 by TMHMM2.0 at aa 46-68
216591017303	PS00215 Mitochondrial energy transfer proteins signature.
216591017304	MarC family integral membrane protein; Region: MarC; cl00919
216591017305	6 probable transmembrane helices predicted for BCAL3435 by TMHMM2.0 at aa 5-27, 40-59, 71-93, 108-130, 137-156 and 176-198
216591017306	HMMPfam hit to PF01914, MarC family integral membrane protein, score 4e-50
216591017307	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591017308	prolyl-tRNA synthetase; Provisional; Region: PRK09194
216591017309	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ProRS_core_prok; cd00779
216591017310	dimer interface [polypeptide binding]; other site
216591017311	motif 1; other site
216591017312	active site
216591017313	motif 2; other site
216591017314	INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and...; Region: ProRS-INS; cd04334
216591017315	putative deacylase active site [active]
216591017316	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
216591017317	active site
216591017318	motif 3; other site
216591017319	ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding; Region: ProRS_anticodon_short; cd00861
216591017320	anticodon binding site; other site
216591017321	HMMPfam hit to PF03129, Anticodon binding domain, score 6.3e-23
216591017322	HMMPfam hit to PF04073, YbaK / prolyl-tRNA synthetases associa, score 5.2e-13
216591017323	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 9.2e-62
216591017324	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591017325	Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant...; Region: Ap4A_hydrolase_plant_like; cd03671
216591017326	putative active site [active]
216591017327	Ap4A binding site [chemical binding]; other site
216591017328	nudix motif; other site
216591017329	putative metal binding site [ion binding]; other site
216591017330	HMMPfam hit to PF00293, NUDIX domain, score 3.3e-21
216591017331	PS00893 mutT domain signature.
216591017332	CNP1-like family; Region: CNP1; pfam08750
216591017333	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017334	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591017335	gamma-glutamyl kinase; Provisional; Region: PRK05429
216591017336	AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine)...; Region: AAK_G5K_ProB; cd04242
216591017337	nucleotide binding site [chemical binding]; other site
216591017338	homotetrameric interface [polypeptide binding]; other site
216591017339	putative phosphate binding site [ion binding]; other site
216591017340	putative allosteric binding site; other site
216591017341	PUA domain; Region: PUA; pfam01472
216591017342	HMMPfam hit to PF01472, PUA domain, score 1.3e-25
216591017343	HMMPfam hit to PF00696, Amino acid kinase family, score 1.1e-59
216591017344	PS00902 Glutamate 5-kinase signature.
216591017345	GTPase CgtA; Reviewed; Region: obgE; PRK12299
216591017346	GTP1/OBG; Region: GTP1_OBG; pfam01018
216591017347	Obg GTPase; Region: Obg; cd01898
216591017348	G1 box; other site
216591017349	GTP/Mg2+ binding site [chemical binding]; other site
216591017350	Switch I region; other site
216591017351	G2 box; other site
216591017352	G3 box; other site
216591017353	Switch II region; other site
216591017354	G4 box; other site
216591017355	G5 box; other site
216591017356	HMMPfam hit to PF01926, GTPase of unknown function, score 3.5e-38
216591017357	PS00905 GTP1/OBG family signature.
216591017358	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017359	HMMPfam hit to PF01018, GTP1/OBG, score 1.2e-76
216591017360	50S ribosomal protein L27; Validated; Region: rpmA; PRK05435
216591017361	HMMPfam hit to PF01016, Ribosomal L27 protein, score 2.5e-50
216591017362	PS00831 Ribosomal protein L27 signature.
216591017363	50S ribosomal protein L21/unknown domain fusion protein; Provisional; Region: PRK12278
216591017364	50S ribosomal protein L21; Validated; Region: rplU; PRK05573
216591017365	HMMPfam hit to PF00829, Ribosomal prokaryotic L21 protein, score 6.7e-57
216591017366	PS01169 Ribosomal protein L21 signature.
216591017367	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
216591017368	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
216591017369	substrate binding pocket [chemical binding]; other site
216591017370	chain length determination region; other site
216591017371	substrate-Mg2+ binding site; other site
216591017372	catalytic residues [active]
216591017373	aspartate-rich region 1; other site
216591017374	active site lid residues [active]
216591017375	aspartate-rich region 2; other site
216591017376	HMMPfam hit to PF00348, Polyprenyl synthetase, score 1.4e-84
216591017377	PS00723 Polyprenyl synthetases signature 1.
216591017378	Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]; Region: CorB; COG4536
216591017379	Domain of unknown function DUF21; Region: DUF21; pfam01595
216591017380	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
216591017381	Transporter associated domain; Region: CorC_HlyC; smart01091
216591017382	4 probable transmembrane helices predicted for BCAL3444 by TMHMM2.0 at aa 4-26, 61-83, 93-115 and 144-161
216591017383	HMMPfam hit to PF01595, Domain of unknown function DUF21, score 4.8e-50
216591017384	HMMPfam hit to PF00571, CBS domain pair, score 7.5e-24
216591017385	HMMPfam hit to PF03471, Transporter associated domain, score 6.2e-11
216591017386	Type II/IV secretion system protein; Region: T2SE; pfam00437
216591017387	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
216591017388	Walker A motif; other site
216591017389	ATP binding site [chemical binding]; other site
216591017390	Walker B motif; other site
216591017391	HMMPfam hit to PF00437, Type II/IV secretion system protein, score 8.9e-110
216591017392	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017393	PS00662 Bacterial type II secretion system protein E signature.
216591017394	PS00190 Cytochrome c family heme-binding site signature.
216591017395	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
216591017396	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
216591017397	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 3.8e-17
216591017398	PS00874 Bacterial type II secretion system protein F signature.
216591017399	3 probable transmembrane helices predicted for BCAL3446 by TMHMM2.0 at aa 167-189, 209-231 and 373-395
216591017400	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 9.4e-20
216591017401	Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: PulO; COG1989
216591017402	Bacterial Peptidase A24 N-terminal domain; Region: DiS_P_DiS; pfam06750
216591017403	Type IV leader peptidase family; Region: Peptidase_A24; pfam01478
216591017404	6 probable transmembrane helices predicted for BCAL3447 by TMHMM2.0 at aa 25-47, 142-164, 179-201, 208-230, 245-267 and 279-301
216591017405	HMMPfam hit to PF06750, Bacterial Peptidase A24 N-terminal doma, score 7.2e-47
216591017406	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591017407	HMMPfam hit to PF01478, Type IV leader peptidase family, score 8.9e-26
216591017408	Dephospho-CoA kinase [Coenzyme metabolism]; Region: CoaE; COG0237
216591017409	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
216591017410	CoA-binding site [chemical binding]; other site
216591017411	ATP-binding [chemical binding]; other site
216591017412	HMMPfam hit to PF01121, Dephospho-CoA kinase, score 3.2e-76
216591017413	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017414	hypothetical protein; Provisional; Region: PRK05287
216591017415	HMMPfam hit to PF07072, Protein of unknown function (DUF1342), score 3.5e-118
216591017416	The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic...; Region: MutT_pyrophosphohydrolase; cd03425
216591017417	active site
216591017418	8-oxo-dGMP binding site [chemical binding]; other site
216591017419	nudix motif; other site
216591017420	metal binding site [ion binding]; metal-binding site
216591017421	HMMPfam hit to PF00293, NUDIX domain, score 9.2e-21
216591017422	PS00893 mutT domain signature.
216591017423	Predicted ATPase (AAA+ superfamily) [General function prediction only]; Region: COG2607
216591017424	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591017425	Walker A motif; other site
216591017426	ATP binding site [chemical binding]; other site
216591017427	Walker B motif; other site
216591017428	HMMPfam hit to PF05673, Protein of unknown function (DUF815), score 6e-67
216591017429	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017430	Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in...; Region: OAT; cd02152
216591017431	heterotetramer interface [polypeptide binding]; other site
216591017432	active site pocket [active]
216591017433	cleavage site
216591017434	HMMPfam hit to PF01960, ArgJ family, score 1.1e-180
216591017435	preprotein translocase subunit SecA; Reviewed; Region: PRK12904
216591017436	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
216591017437	SecA preprotein cross-linking domain; Region: SecA_PP_bind; smart00958
216591017438	SEC-C motif; Region: SEC-C; pfam02810
216591017439	HMMPfam hit to PF02810, SEC-C motif, score 1e-10
216591017440	HMMPfam hit to PF07516, SecA Wing and Scaffold domain, score 1.8e-97
216591017441	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 0.011
216591017442	PS01312 Protein secA signatures.
216591017443	HMMPfam hit to PF07517, SecA DEAD-like domain, score 1.7e-218
216591017444	HMMPfam hit to PF01043, SecA preprotein cross-linking domain, score 2.1e-77
216591017445	Protein of unknown function (DUF721); Region: DUF721; pfam05258
216591017446	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed; Region: lpxC; PRK13186
216591017447	UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331
216591017448	HMMPfam hit to PF03331, UDP-3-O-acyl N-acetylglycosamine deacetylase, score 1.5e-150
216591017449	Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5...; Region: PRX5_like; cd03013
216591017450	catalytic triad [active]
216591017451	dimer interface [polypeptide binding]; other site
216591017452	HMMPfam hit to PF08534, Redoxin, score 4.3e-63
216591017453	HMMPfam hit to PF00578, AhpC/TSA family, score 0.0024
216591017454	cell division protein FtsZ; Validated; Region: PRK09330
216591017455	FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at...; Region: FtsZ_type1; cd02201
216591017456	nucleotide binding site [chemical binding]; other site
216591017457	SulA interaction site; other site
216591017458	HMMPfam hit to PF03953, Tubulin/FtsZ family, C-terminal domain, score 2.4e-27
216591017459	HMMPfam hit to PF00091, Tubulin/FtsZ family, GTPase domain, score 1.6e-83
216591017460	PS01135 FtsZ protein signature 2.
216591017461	cell division protein FtsA; Region: ftsA; TIGR01174
216591017462	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
216591017463	nucleotide binding site [chemical binding]; other site
216591017464	Cell division protein FtsA; Region: FtsA; pfam14450
216591017465	HMMPfam hit to PF02491, Cell division protein FtsA, score 8.7e-76
216591017466	PS01036 Heat shock hsp70 proteins family signature 3.
216591017467	HMMPfam hit to PF02491, Cell division protein FtsA, score 6.1e-88
216591017468	Cell division septal protein [Cell envelope biogenesis, outer membrane]; Region: FtsQ; COG1589
216591017469	POTRA domain, FtsQ-type; Region: POTRA_1; pfam08478
216591017470	Cell division protein FtsQ; Region: FtsQ; pfam03799
216591017471	HMMPfam hit to PF03799, Cell division protein FtsQ, score 0.00097
216591017472	HMMPfam hit to PF08478, POTRA domain, FtsQ-type, score 8.5e-24
216591017473	1 probable transmembrane helix predicted for BCAL3459 by TMHMM2.0 at aa 10-32
216591017474	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017475	D-alanine--D-alanine ligase; Reviewed; Region: ddl; PRK01372
216591017476	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
216591017477	ATP-grasp domain; Region: ATP-grasp_4; cl17255
216591017478	HMMPfam hit to PF07478, D-ala D-ala ligase C-terminus, score 4.3e-79
216591017479	HMMPfam hit to PF02222, ATP-grasp domain, score 0.0019
216591017480	HMMPfam hit to PF01820, D-ala D-ala ligase N-terminus, score 2.5e-22
216591017481	UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: murC; PRK00421
216591017482	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
216591017483	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
216591017484	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
216591017485	HMMPfam hit to PF02875, Mur ligase family, glutamate ligase doma, score 1.8e-23
216591017486	HMMPfam hit to PF08245, Mur ligase middle domain, score 2.4e-36
216591017487	HMMPfam hit to PF01225, Mur ligase family, catalytic domain, score 4.4e-44
216591017488	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726
216591017489	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
216591017490	active site
216591017491	homodimer interface [polypeptide binding]; other site
216591017492	HMMPfam hit to PF04101, Glycosyltransferase family, score 1.1e-39
216591017493	HMMPfam hit to PF03033, Glycosyltransferase family, score 9.1e-36
216591017494	cell division protein FtsW; Region: ftsW; TIGR02614
216591017495	HMMPfam hit to PF01098, Cell cycle protein, score 2e-124
216591017496	10 probable transmembrane helices predicted for BCAL3463 by TMHMM2.0 at aa 57-79, 94-113, 126-143, 158-180, 192-209, 213-232, 237-254, 315-337, 357-375 and 390-412
216591017497	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional; Region: murD; PRK02006
216591017498	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
216591017499	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
216591017500	HMMPfam hit to PF02875, Mur ligase family, glutamate ligase doma, score 3.5e-09
216591017501	HMMPfam hit to PF08245, Mur ligase middle domain, score 2.2e-57
216591017502	phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional; Region: mraY; PRK00108
216591017503	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
216591017504	Mg++ binding site [ion binding]; other site
216591017505	putative catalytic motif [active]
216591017506	putative substrate binding site [chemical binding]; other site
216591017507	10 probable transmembrane helices predicted for BCAL3465 by TMHMM2.0 at aa 22-44, 65-87, 97-114, 134-153, 194-216, 223-242, 257-279, 286-308, 312-334 and 367-386
216591017508	HMMPfam hit to PF00953, Glycosyl transferase family, score 3.6e-55
216591017509	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591017510	UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]; Region: MurF; COG0770
216591017511	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
216591017512	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
216591017513	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
216591017514	HMMPfam hit to PF02875, Mur ligase family, glutamate ligase doma, score 7.6e-12
216591017515	HMMPfam hit to PF08245, Mur ligase middle domain, score 1.3e-44
216591017516	HMMPfam hit to PF01225, Mur ligase family, catalytic domain, score 2.8e-17
216591017517	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139
216591017518	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
216591017519	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
216591017520	HMMPfam hit to PF02875, Mur ligase family, glutamate ligase doma, score 2.7e-33
216591017521	HMMPfam hit to PF08245, Mur ligase middle domain, score 4.4e-64
216591017522	HMMPfam hit to PF01225, Mur ligase family, catalytic domain, score 0.0018
216591017523	Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768
216591017524	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
216591017525	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
216591017526	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 6.6e-94
216591017527	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017528	HMMPfam hit to PF03717, Penicillin-binding Protein dimerisatio, score 2.9e-48
216591017529	1 probable transmembrane helix predicted for BCAL3468 by TMHMM2.0 at aa 29-48
216591017530	Cell division protein FtsL; Region: FtsL; cl11433
216591017531	MraW methylase family; Region: Methyltransf_5; cl17771
216591017532	16S rRNA m(4)C1402 methyltranserfase; Provisional; Region: PRK00050
216591017533	HMMPfam hit to PF01795, MraW methylase family, score 4.7e-134
216591017534	cell division protein MraZ; Reviewed; Region: PRK00326
216591017535	MraZ protein; Region: MraZ; pfam02381
216591017536	MraZ protein; Region: MraZ; pfam02381
216591017537	HMMPfam hit to PF02381, MraZ protein, score 2.3e-14
216591017538	HMMPfam hit to PF02381, MraZ protein, score 6.7e-11
216591017539	Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain; Region: DMQH; cd01042
216591017540	diiron binding motif [ion binding]; other site
216591017541	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591017542	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591017543	trimer interface [polypeptide binding]; other site
216591017544	eyelet of channel; other site
216591017545	HMMPfam hit to PF00267, Gram-negative porin, score 1.9e-06
216591017546	Long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07059
216591017547	Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD; Region: FC-FACS_FadD_like; cd05936
216591017548	acyl-activating enzyme (AAE) consensus motif; other site
216591017549	putative AMP binding site [chemical binding]; other site
216591017550	putative active site [active]
216591017551	putative CoA binding site [chemical binding]; other site
216591017552	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.5e-129
216591017553	PS00455 Putative AMP-binding domain signature.
216591017554	The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members...; Region: MopB_3; cd02766
216591017555	Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243
216591017556	putative [4Fe-4S] binding site [ion binding]; other site
216591017557	putative molybdopterin cofactor binding site [chemical binding]; other site
216591017558	The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the...; Region: MopB_CT_3; cd02786
216591017559	putative molybdopterin cofactor binding site; other site
216591017560	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 1.9e-25
216591017561	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 1.4e-54
216591017562	HMMPfam hit to PF04879, Molybdopterin oxidoreductase Fe4S4 do, score 8.3e-13
216591017563	Cytochrome B561 [Energy production and conversion]; Region: CybB; COG3038
216591017564	HMMPfam hit to PF01292, Cytochrome b561 family, score 1.1e-34
216591017565	4 probable transmembrane helices predicted for BCAL3476 by TMHMM2.0 at aa 13-32, 42-64, 90-112 and 142-164
216591017566	Catalase-like heme-binding proteins similar to the uncharacterized srpA; Region: srpA_like; cd08153
216591017567	putative heme binding pocket [chemical binding]; other site
216591017568	HMMPfam hit to PF00199, Catalase, score 6e-11
216591017569	1 probable transmembrane helix predicted for BCAL3477 by TMHMM2.0 at aa 20-42
216591017570	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591017571	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591017572	DNA binding residues [nucleotide binding]
216591017573	HMMPfam hit to PF04542, Sigma-70 region, score 7.6e-12
216591017574	HMMPfam hit to PF08281, Sigma-70, region, score 2.4e-15
216591017575	HMMPfam hit to PF04545, Sigma-70, region, score 1.3e-13
216591017576	Predicted helix-turn-helix motif with score 1168.000, SD 3.17 at aa 128-149, sequence FTYQEAADLLEVPIGTVMSRLS
216591017577	Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]; Region: COG5662
216591017578	1 probable transmembrane helix predicted for BCAL3479 by TMHMM2.0 at aa 83-105
216591017579	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591017580	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
216591017581	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
216591017582	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
216591017583	HMMPfam hit to PF01609, Transposase DDE domain, score 3.6e-32
216591017584	Protein of unknown function (DUF2628); Region: DUF2628; pfam10947
216591017585	3 probable transmembrane helices predicted for BCAL3485 by TMHMM2.0 at aa 64-86, 90-109 and 142-164
216591017586	RNA polymerase sigma factor SigJ; Provisional; Region: PRK09636
216591017587	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591017588	HMMPfam hit to PF08281, Sigma-70, region, score 6.4e-11
216591017589	HMMPfam hit to PF04542, Sigma-70 region, score 1.9e-13
216591017590	Uncharacterized conserved protein [Function unknown]; Region: COG2128
216591017591	Carboxymuconolactone decarboxylase family; Region: CMD; pfam02627
216591017592	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 8.1e-22
216591017593	ergothioneine biosynthesis protein EgtB; Region: egtB_TIGR03440
216591017594	Formylglycine-generating sulfatase enzyme; Region: FGE-sulfatase; pfam03781
216591017595	HMMPfam hit to PF03781, Domain of unknown function (DUF323), score 1.8e-19
216591017596	dimethylhistidine N-methyltransferase; Region: egtD_ergothio; TIGR03438
216591017597	Uncharacterized conserved protein (DUF2260); Region: DUF2260; pfam10017
216591017598	2 probable transmembrane helices predicted for BCAL3490 by TMHMM2.0 at aa 5-22 and 37-59
216591017599	2 probable transmembrane helices predicted for BCAL3491 by TMHMM2.0 at aa 7-29 and 34-56
216591017600	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017601	1 probable transmembrane helix predicted for BCAL3492 by TMHMM2.0 at aa 7-26
216591017602	Restriction endonuclease [Defense mechanisms]; Region: COG3587
216591017603	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591017604	ATP binding site [chemical binding]; other site
216591017605	putative Mg++ binding site [ion binding]; other site
216591017606	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 3.2e-06
216591017607	Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]; Region: COG2189
216591017608	DNA methylase; Region: N6_N4_Mtase; pfam01555
216591017609	DNA methylase; Region: N6_N4_Mtase; cl17433
216591017610	HMMPfam hit to PF01555, DNA methylase, score 1.4e-28
216591017611	PS00092 N-6 Adenine-specific DNA methylases signature.
216591017612	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591017613	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591017614	trimer interface [polypeptide binding]; other site
216591017615	eyelet of channel; other site
216591017616	HMMPfam hit to PF00267, Gram-negative porin, score 0.0042
216591017617	PS00099 Thiolases active site.
216591017618	transcriptional regulatory protein TctD; Provisional; Region: PRK15479
216591017619	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591017620	active site
216591017621	phosphorylation site [posttranslational modification]
216591017622	intermolecular recognition site; other site
216591017623	dimerization interface [polypeptide binding]; other site
216591017624	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591017625	DNA binding site [nucleotide binding]
216591017626	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 3.7e-18
216591017627	HMMPfam hit to PF00072, Response regulator receiver domain, score 5e-38
216591017628	Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521
216591017629	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591017630	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591017631	dimer interface [polypeptide binding]; other site
216591017632	phosphorylation site [posttranslational modification]
216591017633	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591017634	ATP binding site [chemical binding]; other site
216591017635	Mg2+ binding site [ion binding]; other site
216591017636	G-X-G motif; other site
216591017637	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.3e-37
216591017638	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.3e-11
216591017639	2 probable transmembrane helices predicted for BCAL3497 by TMHMM2.0 at aa 10-29 and 163-182
216591017640	HMMPfam hit to PF08521, Two-component sensor kinase N-terminal, score 1.3e-45
216591017641	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591017642	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591017643	dimer interface [polypeptide binding]; other site
216591017644	conserved gate region; other site
216591017645	putative PBP binding loops; other site
216591017646	ABC-ATPase subunit interface; other site
216591017647	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.4e-23
216591017648	6 probable transmembrane helices predicted for BCAL3498 by TMHMM2.0 at aa 34-53, 98-117, 124-146, 150-172, 204-226 and 249-271
216591017649	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591017650	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591017651	Walker A/P-loop; other site
216591017652	ATP binding site [chemical binding]; other site
216591017653	Q-loop/lid; other site
216591017654	ABC transporter signature motif; other site
216591017655	Walker B; other site
216591017656	D-loop; other site
216591017657	H-loop/switch region; other site
216591017658	HMMPfam hit to PF00005, ABC transporter, score 3.4e-58
216591017659	PS00211 ABC transporters family signature.
216591017660	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017661	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
216591017662	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591017663	membrane-bound complex binding site; other site
216591017664	hinge residues; other site
216591017665	PS00217 Sugar transport proteins signature 2.
216591017666	flagellar biosynthesis protein FliR; Reviewed; Region: fliR; PRK05701
216591017667	HMMPfam hit to PF01311, Bacterial export proteins, family, score 1.7e-61
216591017668	6 probable transmembrane helices predicted for BCAL3501 by TMHMM2.0 at aa 15-37, 44-61, 71-93, 129-151, 183-205 and 212-234
216591017669	flagellar biosynthesis protein FliQ; Validated; Region: fliQ; PRK05700
216591017670	HMMPfam hit to PF01313, Bacterial export proteins, family, score 1.1e-36
216591017671	2 probable transmembrane helices predicted for BCAL3502 by TMHMM2.0 at aa 15-37 and 49-71
216591017672	flagellar biosynthesis protein FliP; Reviewed; Region: fliP; PRK05699
216591017673	HMMPfam hit to PF00813, FliP family, score 2.9e-113
216591017674	5 probable transmembrane helices predicted for BCAL3503 by TMHMM2.0 at aa 13-35, 55-77, 97-114, 191-213 and 226-245
216591017675	PS01061 Flagella transport protein fliP family signature 2.
216591017676	PS01060 Flagella transport protein fliP family signature 1.
216591017677	Flagellar biosynthesis protein, FliO; Region: FliO; pfam04347
216591017678	HMMPfam hit to PF04347, Flagellar biosynthesis protein, FliO, score 4.6e-12
216591017679	2 probable transmembrane helices predicted for BCAL3504 by TMHMM2.0 at aa 13-32 and 61-83
216591017680	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017681	Surface presentation of antigens (SPOA); Region: SpoA; cl00819
216591017682	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) prot, score 2.6e-30
216591017683	flagellar motor switch protein FliM; Validated; Region: fliM; PRK06666
216591017684	Surface presentation of antigens (SPOA); Region: SpoA; pfam01052
216591017685	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) prot, score 0.025
216591017686	HMMPfam hit to PF02154, Flagellar motor switch protein FliM, score 6e-98
216591017687	flagellar basal body-associated protein FliL; Reviewed; Region: fliL; PRK07021
216591017688	HMMPfam hit to PF03748, Flagellar basal body-associated protein FliL, score 2.3e-31
216591017689	1 probable transmembrane helix predicted for BCAL3507 by TMHMM2.0 at aa 21-43
216591017690	Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]; Region: LrgB; COG1346
216591017691	HMMPfam hit to PF04172, LrgB-like family, score 2.9e-96
216591017692	5 probable transmembrane helices predicted for BCAL3508 by TMHMM2.0 at aa 13-32, 47-69, 101-123, 160-182 and 215-237
216591017693	LrgA family; Region: LrgA; pfam03788
216591017694	HMMPfam hit to PF03788, LrgA family, score 3e-29
216591017695	4 probable transmembrane helices predicted for BCAL3509 by TMHMM2.0 at aa 20-42, 52-70, 83-105 and 110-132
216591017696	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591017697	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591017698	The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold; Region: PBP2_CidR; cd08438
216591017699	putative dimerization interface [polypeptide binding]; other site
216591017700	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.3e-22
216591017701	Predicted helix-turn-helix motif with score 1827.000, SD 5.41 at aa 16-37, sequence QSFTAAADKLFVTQPTISKMVK
216591017702	PS00044 Bacterial regulatory proteins, lysR family signature.
216591017703	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.6e-46
216591017704	Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]; Region: Phd; COG4118
216591017705	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591017706	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591017707	putative substrate translocation pore; other site
216591017708	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591017709	13 probable transmembrane helices predicted for BCAL3511 by TMHMM2.0 at aa 21-43, 63-85, 92-111, 116-138, 151-173, 178-200, 212-234, 239-261, 281-303, 318-335, 347-369, 379-401 and 490-507
216591017710	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.1e-61
216591017711	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017712	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591017713	MarR family; Region: MarR_2; cl17246
216591017714	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017715	HMMPfam hit to PF01047, MarR family, score 2.2e-16
216591017716	1 probable transmembrane helix predicted for BCAL3513 by TMHMM2.0 at aa 32-54
216591017717	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591017718	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017719	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.3e-39
216591017720	HMMPfam hit to PF02321, Outer membrane efflux protein, score 6.8e-53
216591017721	Type II secretion system (T2SS), protein N; Region: T2SN; pfam01203
216591017722	1 probable transmembrane helix predicted for BCAL3515 by TMHMM2.0 at aa 20-42
216591017723	Type II secretion system (T2SS), protein M; Region: T2SM; pfam04612
216591017724	HMMPfam hit to PF04612, General secretion pathway, M protein, score 9.8e-60
216591017725	1 probable transmembrane helix predicted for BCAL3516 by TMHMM2.0 at aa 24-46
216591017726	CDS contains a frameshift, and possible internal deletion, after codon 220. Similar to Vibrio cholerae general secretion pathway protein L EpsL UniProt:P45782 (EMBL:AE004338) (407 aa) fasta scores: E()=0.045, 25.310% id in 403 aa, and to Burkholderia cenocepacia AU 1054 general secretion pathway protein L UniProt:Q456C2 (EMBL:AAHI01000010) (457 aa) fasta scores: E()=1.5e-72, 90.372% id in 457 aa
216591017727	HMMPfam hit to PF05134, General secretion pathway protein L (GspL), score 5.8e-65
216591017728	Type II secretion system (T2SS), protein K; Region: T2SK; pfam03934
216591017729	HMMPfam hit to PF03934, General secretion pathway protein K, score 7.4e-33
216591017730	PS00041 Bacterial regulatory proteins, araC family signature.
216591017731	1 probable transmembrane helix predicted for BCAL3519 by TMHMM2.0 at aa 16-38
216591017732	HMMPfam hit to PF07963, Prokaryotic N-terminal methylation motif, score 5.8e-09
216591017733	1 probable transmembrane helix predicted for BCAL3520 by TMHMM2.0 at aa 13-35
216591017734	PS00409 Prokaryotic N-terminal methylation site.
216591017735	type II secretion system protein I; Region: gspI; TIGR01707
216591017736	Type II secretion system (T2SS), protein I; Region: T2SI; pfam02501
216591017737	HMMPfam hit to PF02501, Bacterial type II secretion system protein I, score 1.5e-32
216591017738	1 probable transmembrane helix predicted for BCAL3521 by TMHMM2.0 at aa 15-37
216591017739	HMMPfam hit to PF07963, Prokaryotic N-terminal methylation motif, score 1.7e-06
216591017740	Type IV pilin N-term methylation site GFxxxE; Region: N_methyl_2; cl06830
216591017741	type II secretion system protein H; Region: typeII_sec_gspH; TIGR01708
216591017742	Type II transport protein GspH; Region: GspH; pfam12019
216591017743	1 probable transmembrane helix predicted for BCAL3522 by TMHMM2.0 at aa 13-35
216591017744	HMMPfam hit to PF07963, Prokaryotic N-terminal methylation motif, score 4.4e-06
216591017745	PS00409 Prokaryotic N-terminal methylation site.
216591017746	prepilin-type N-terminal cleavage/methylation domain; Region: IV_pilin_GFxxxE; TIGR02532
216591017747	type II secretion system protein G; Region: typeII_sec_gspG; TIGR01710
216591017748	Type II secretion system (T2SS), protein G; Region: T2SG; pfam08334
216591017749	HMMPfam hit to PF08334, Bacterial type II secretion system protein G, score 7.2e-67
216591017750	HMMPfam hit to PF07963, Prokaryotic N-terminal methylation motif, score 5.4e-09
216591017751	1 probable transmembrane helix predicted for BCAL3523 by TMHMM2.0 at aa 17-39
216591017752	PS00409 Prokaryotic N-terminal methylation site.
216591017753	Type IV pilus biogenesis; Region: Pilus_PilP; pfam11356
216591017754	1 probable transmembrane helix predicted for BCAL3524 by TMHMM2.0 at aa 5-27
216591017755	type II secretion system protein F; Region: GspF; TIGR02120
216591017756	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
216591017757	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
216591017758	3 probable transmembrane helices predicted for BCAL3525 by TMHMM2.0 at aa 167-189, 220-239 and 376-398
216591017759	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 8.3e-17
216591017760	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 7.5e-25
216591017761	Type II secretion system (T2SS), protein E, N-terminal domain; Region: T2SE_Nter; pfam05157
216591017762	type II secretion system protein E; Region: type_II_gspE; TIGR02533
216591017763	PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129
216591017764	Walker A motif; other site
216591017765	ATP binding site [chemical binding]; other site
216591017766	Walker B motif; other site
216591017767	HMMPfam hit to PF00437, Type II/IV secretion system protein, score 6.8e-136
216591017768	PS00662 Bacterial type II secretion system protein E signature.
216591017769	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017770	type II secretion system protein D; Region: type_II_gspD; TIGR02517
216591017771	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
216591017772	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
216591017773	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
216591017774	pilus (MSHA type) biogenesis protein MshL; Region: pilus_MshL; TIGR02519
216591017775	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
216591017776	HMMPfam hit to PF00263, Bacterial type II and III secretion system, score 3.2e-88
216591017777	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 2.4e-13
216591017778	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 1.6e-08
216591017779	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 2.6e-11
216591017780	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
216591017781	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591017782	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591017783	catalytic residue [active]
216591017784	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 2.1e-28
216591017785	Putative GTPases (G3E family) [General function prediction only]; Region: COG0523
216591017786	CobW/HypB/UreG, nucleotide-binding domain; Region: cobW; pfam02492
216591017787	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; smart00833
216591017788	HMMPfam hit to PF02492, CobW/HypB/UreG, nucleotide-binding domain, score 4.8e-88
216591017789	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017790	HMMPfam hit to PF07683, Cobalamin synthesis protein cobW C-terminal, score 1.3e-37
216591017791	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
216591017792	IHF dimer interface [polypeptide binding]; other site
216591017793	IHF - DNA interface [nucleotide binding]; other site
216591017794	HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 1.1e-46
216591017795	PS00045 Bacterial histone-like DNA-binding proteins signature.
216591017796	bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed; Region: mnmC; PRK01747
216591017797	S-adenosyl-L-methionine-dependent methyltransferase; Region: Methyltransf_30; cl17711
216591017798	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591017799	HMMPfam hit to PF05430, Protein of unknown function (DUF752), score 3.2e-31
216591017800	1 probable transmembrane helix predicted for BCAL3531 by TMHMM2.0 at aa 55-77
216591017801	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 6.1e-48
216591017802	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017803	RNA polymerase sigma factor; Provisional; Region: PRK12545
216591017804	Sigma-70, region 4; Region: Sigma70_r4_2; pfam08281
216591017805	DNA binding residues [nucleotide binding]
216591017806	HMMPfam hit to PF04542, Sigma-70 region, score 1.7e-12
216591017807	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017808	HMMPfam hit to PF08281, Sigma-70, region, score 5.8e-05
216591017809	Putative zinc-finger; Region: zf-HC2; pfam13490
216591017810	Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034
216591017811	ArsC family; Region: ArsC; pfam03960
216591017812	catalytic residues [active]
216591017813	HMMPfam hit to PF03960, ArsC family, score 2.1e-34
216591017814	ParA-like protein; Provisional; Region: PHA02518
216591017815	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591017816	P-loop; other site
216591017817	Magnesium ion binding site [ion binding]; other site
216591017818	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 9.2e-18
216591017819	Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475
216591017820	ParB-like nuclease domain; Region: ParB; smart00470
216591017821	HMMPfam hit to PF02195, ParB-like nuclease domain, score 1.4e-11
216591017822	Predicted helix-turn-helix motif with score 1577.000, SD 4.56 at aa 204-225, sequence QSQKELSEHLGLDESTVAVALS
216591017823	Initiator Replication protein; Region: Rep_3; pfam01051
216591017824	Plasmid replication region DNA-binding N-term; Region: KfrA_N; pfam11740
216591017825	site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236
216591017826	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
216591017827	active site
216591017828	catalytic residues [active]
216591017829	Int/Topo IB signature motif; other site
216591017830	DNA binding site [nucleotide binding]
216591017831	HMMPfam hit to PF00589, Phage integrase family, score 0.00032
216591017832	Protein of unknown function (DUF2471); Region: DUF2471; pfam10616
216591017833	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591017834	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591017835	non-specific DNA binding site [nucleotide binding]; other site
216591017836	salt bridge; other site
216591017837	sequence-specific DNA binding site [nucleotide binding]; other site
216591017838	Cupin domain; Region: Cupin_2; pfam07883
216591017839	HMMPfam hit to PF07883, Cupin domain, score 1.4e-11
216591017840	HMMPfam hit to PF01381, Helix-turn-helix, score 5.1e-17
216591017841	Predicted helix-turn-helix motif with score 1501.000, SD 4.30 at aa 39-60, sequence LTLDDLSRAAGVSKSMLSEIER
216591017842	pyridoxal phosphate-dependent acyltransferase, putative; Region: gly_Cac_T_rel; TIGR01825
216591017843	KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS); Region: KBL_like; cd06454
216591017844	substrate-cofactor binding pocket; other site
216591017845	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591017846	catalytic residue [active]
216591017847	HMMPfam hit to PF00202, Aminotransferase class-III, score 0.02
216591017848	HMMPfam hit to PF00155, Aminotransferase class I and II, score 2.4e-92
216591017849	HMMPfam hit to PF00464, Serine hydroxymethyltransferase, score 0.00023
216591017850	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
216591017851	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017852	L-threonine 3-dehydrogenase; Validated; Region: tdh; PRK05396
216591017853	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
216591017854	NAD(P) binding site [chemical binding]; other site
216591017855	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 3.2e-43
216591017856	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591017857	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 9.4e-42
216591017858	2 probable transmembrane helices predicted for BCAM0012 by TMHMM2.0 at aa 24-46 and 56-78
216591017859	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
216591017860	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.2e-15
216591017861	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591017862	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591017863	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 8.3e-15
216591017864	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017865	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3558
216591017866	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591017867	HMMPfam hit to PF07080, Protein of unknown function (DUF1348), score 2.8e-95
216591017868	tartrate dehydrogenase; Region: TTC; TIGR02089
216591017869	Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]; Region: LeuB; COG0473
216591017870	HMMPfam hit to PF00180, Isocitrate/isopropylmalate dehydrogenase, score 7.2e-103
216591017871	PS00470 Isocitrate and isopropylmalate dehydrogenases signature.
216591017872	transcriptional activator TtdR; Provisional; Region: PRK09801
216591017873	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591017874	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479
216591017875	putative effector binding pocket; other site
216591017876	putative dimerization interface [polypeptide binding]; other site
216591017877	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4e-18
216591017878	Predicted helix-turn-helix motif with score 1242.000, SD 3.42 at aa 20-41, sequence ASFSAAAEQLAVSPAYVSKRIA
216591017879	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.9e-45
216591017880	N-acetyl-gamma-glutamyl-phosphate reductase; Provisional; Region: PRK11863
216591017881	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
216591017882	HMMPfam hit to PF01118, Semialdehyde dehydrogenase, NAD bindin, score 9.8e-11
216591017883	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591017884	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591017885	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591017886	dimerization interface [polypeptide binding]; other site
216591017887	PS00228 Tubulin-beta mRNA autoregulation signal.
216591017888	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.7e-15
216591017889	Predicted helix-turn-helix motif with score 1158.000, SD 3.13 at aa 19-40, sequence GSFVAAAQWLHLAPPTVSLHVA
216591017890	PS00044 Bacterial regulatory proteins, lysR family signature.
216591017891	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.5e-40
216591017892	2 probable transmembrane helices predicted for BCAM0020 by TMHMM2.0 at aa 21-43 and 48-70
216591017893	Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; Region: RssA; COG1752
216591017894	Hypothetical patatin similar to Z1214 protein of Escherichia coli; Region: Pat_hypo_Ecoli_Z1214_like; cd07209
216591017895	nucleophile elbow; other site
216591017896	Patatin phospholipase; Region: DUF3734; pfam12536
216591017897	HMMPfam hit to PF01734, Patatin-like phospholipase, score 1.4e-21
216591017898	3-hydroxybutyrate dehydrogenase; Provisional; Region: PRK13394
216591017899	classical (c) SDRs; Region: SDR_c; cd05233
216591017900	NAD(P) binding site [chemical binding]; other site
216591017901	active site
216591017902	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.9e-30
216591017903	PS00061 Short-chain dehydrogenases/reductases family signature.
216591017904	acetoacetate decarboxylase; Provisional; Region: PRK02265
216591017905	HMMPfam hit to PF06314, Acetoacetate decarboxylase (ADC), score 5.2e-159
216591017906	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cl00474
216591017907	active site
216591017908	4 probable transmembrane helices predicted for BCAM0024 by TMHMM2.0 at aa 27-49, 56-78, 107-129 and 142-164
216591017909	HMMPfam hit to PF01569, PAP2 superfamily, score 3.6e-19
216591017910	1 probable transmembrane helix predicted for BCAM0025 by TMHMM2.0 at aa 37-59
216591017911	Siderophore-interacting protein [Inorganic ion transport and metabolism]; Region: ViuB; COG2375
216591017912	Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from...; Region: siderophore_interacting; cd06193
216591017913	FAD binding pocket [chemical binding]; other site
216591017914	FAD binding motif [chemical binding]; other site
216591017915	phosphate binding motif [ion binding]; other site
216591017916	NAD binding pocket [chemical binding]; other site
216591017917	HMMPfam hit to PF04954, Siderophore-interacting protein, score 9.6e-42
216591017918	HMMPfam hit to PF08021, Siderophore-interacting FAD-binding dom, score 1.9e-55
216591017919	Predicted transcriptional regulators [Transcription]; Region: COG1695
216591017920	Transcriptional regulator PadR-like family; Region: PadR; pfam03551
216591017921	HMMPfam hit to PF03551, Transcriptional regulator PadR-like family, score 1.5e-28
216591017922	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
216591017923	phosphopeptide binding site; other site
216591017924	HMMPfam hit to PF00498, FHA domain, score 7e-13
216591017925	Predicted helix-turn-helix motif with score 1097.000, SD 2.92 at aa 266-287, sequence IELDRLARMLGIDASHVNVQIH
216591017926	Catalytic domain of Protein Kinases; Region: PKc; cd00180
216591017927	active site
216591017928	ATP binding site [chemical binding]; other site
216591017929	substrate binding site [chemical binding]; other site
216591017930	TOMM system kinase/cyclase fusion protein; Region: TOMM_kin_cyc; TIGR03903
216591017931	activation loop (A-loop); other site
216591017932	cyclase homology domain; Region: CHD; cd07302
216591017933	nucleotidyl binding site; other site
216591017934	metal binding site [ion binding]; metal-binding site
216591017935	AAA ATPase domain; Region: AAA_16; pfam13191
216591017936	HMMPfam hit to PF00069, Protein kinase domain, score 4.1e-45
216591017937	PS00107 Protein kinases ATP-binding region signature.
216591017938	PS00108 Serine/Threonine protein kinases active-site signature.
216591017939	PS00017 ATP/GTP-binding site motif A (P-loop).
216591017940	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.079
216591017941	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.024
216591017942	HMMPfam hit to PF07721, Tetratricopeptide repeat, score 0.058
216591017943	ribosomal natural product, two-chain TOMM family; Region: RNP_Burkhold; TIGR03795
216591017944	ribosomal natural product, two-chain TOMM family; Region: RNP_Burkhold; TIGR03795
216591017945	bacteriocin biosynthesis cyclodehydratase domain; Region: cyclo_dehyd_2; TIGR03882
216591017946	YcaO-like family; Region: YcaO; pfam02624
216591017947	thiazole/oxazole-forming peptide maturase, SagD family component; Region: TOMM_cyclo_SagD; TIGR03604
216591017948	HMMPfam hit to PF02624, YcaO-like family, score 7.8e-60
216591017949	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591017950	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591017951	trimer interface [polypeptide binding]; other site
216591017952	eyelet of channel; other site
216591017953	1 probable transmembrane helix predicted for BCAM0033 by TMHMM2.0 at aa 7-29
216591017954	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
216591017955	classical (c) SDRs; Region: SDR_c; cd05233
216591017956	NAD(P) binding site [chemical binding]; other site
216591017957	active site
216591017958	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00015
216591017959	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.6e-15
216591017960	PS00061 Short-chain dehydrogenases/reductases family signature.
216591017961	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
216591017962	(2R,3R)-2,3-butanediol dehydrogenase; Region: butanediol_DH_like; cd08233
216591017963	putative NAD(P) binding site [chemical binding]; other site
216591017964	catalytic Zn binding site [ion binding]; other site
216591017965	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.5e-42
216591017966	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.1e-46
216591017967	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591017968	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591017969	D-galactonate transporter; Region: 2A0114; TIGR00893
216591017970	putative substrate translocation pore; other site
216591017971	HMMPfam hit to PF00083, Sugar (and other) transporter score 8.4e-05
216591017972	11 probable transmembrane helices predicted for BCAM0036 by TMHMM2.0 at aa 20-42, 55-74, 84-106, 148-170, 175-194, 230-252, 267-289, 296-313, 318-340, 352-374 and 384-406
216591017973	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017974	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.9e-55
216591017975	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017976	PS00217 Sugar transport proteins signature 2.
216591017977	Cupin domain; Region: Cupin_2; pfam07883
216591017978	HMMPfam hit to PF07883, Cupin domain, score 2.4e-05
216591017979	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591017980	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591017981	Predicted helix-turn-helix motif with score 1307.000, SD 3.64 at aa 234-255, sequence LGPQAVADAVGLSLRHLGRLFA
216591017982	PS00041 Bacterial regulatory proteins, araC family signature.
216591017983	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.9e-08
216591017984	choline dehydrogenase; Validated; Region: PRK02106
216591017985	putative FAD-binding dehydrogenase; Reviewed; Region: PRK12834
216591017986	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591017987	HMMPfam hit to PF05199, GMC oxidoreductase, score 1.2e-43
216591017988	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00025
216591017989	HMMPfam hit to PF00732, GMC oxidoreductase, score 5.2e-90
216591017990	PS00624 GMC oxidoreductases signature 2.
216591017991	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591017992	PS00623 GMC oxidoreductases signature 1.
216591017993	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591017994	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591017995	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591017996	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3e-06
216591017997	Predicted helix-turn-helix motif with score 1078.000, SD 2.86 at aa 232-253, sequence LDSRSVSRAINLSPRQLARVFE
216591017998	1 probable transmembrane helix predicted for BCAM0041 by TMHMM2.0 at aa 21-40
216591017999	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018000	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591018001	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591018002	active site
216591018003	catalytic tetrad [active]
216591018004	HMMPfam hit to PF00248, Aldo/keto reductase family, score 2.6e-51
216591018005	Uncharacterized protein conserved in bacteria [Function unknown]; Region: VgrG; COG3501
216591018006	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591018007	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591018008	Putative type VI secretion system Rhs element Vgr; Region: T6SS_Vgr; pfam13296
216591018009	Uncharacterized protein conserved in bacteria (DUF2345); Region: DUF2345; pfam10106
216591018010	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 4.8e-21
216591018011	Domain of unknown function (DUF4123); Region: DUF4123; pfam13503
216591018012	Protein of unknown function (DUF3304); Region: DUF3304; pfam11745
216591018013	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018014	Uncharacterized conserved protein (DUF2235); Region: DUF2235; pfam09994
216591018015	Lysine efflux permease [General function prediction only]; Region: COG1279
216591018016	6 probable transmembrane helices predicted for BCAM0047 by TMHMM2.0 at aa 5-27, 40-62, 67-89, 122-144, 154-176 and 183-205
216591018017	HMMPfam hit to PF01810, LysE type translocator, score 4.1e-44
216591018018	chromosome replication initiation inhibitor protein; Validated; Region: PRK03635
216591018019	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591018020	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591018021	dimerization interface [polypeptide binding]; other site
216591018022	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.5e-14
216591018023	Predicted helix-turn-helix motif with score 2002.000, SD 6.01 at aa 17-38, sequence GSFERAAKELNVTPSAVSQRVK
216591018024	PS00044 Bacterial regulatory proteins, lysR family signature.
216591018025	PS00070 Aldehyde dehydrogenases cysteine active site.
216591018026	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.1e-09
216591018027	fumarate/nitrate reduction transcriptional regulator; Provisional; Region: PRK11161
216591018028	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
216591018029	ligand binding site [chemical binding]; other site
216591018030	flexible hinge region; other site
216591018031	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
216591018032	putative switch regulator; other site
216591018033	non-specific DNA interactions [nucleotide binding]; other site
216591018034	DNA binding site [nucleotide binding]
216591018035	sequence specific DNA binding site [nucleotide binding]; other site
216591018036	putative cAMP binding site [chemical binding]; other site
216591018037	HMMPfam hit to PF00325, Bacterial regulatory proteins, crp famil, score 8.8e-15
216591018038	PS00042 Bacterial regulatory proteins, crp family signature.
216591018039	Predicted helix-turn-helix motif with score 1625.000, SD 4.72 at aa 201-222, sequence MTREDIGSYLGMTLETVSRTLS
216591018040	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 4.9e-21
216591018041	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591018042	Ligand Binding Site [chemical binding]; other site
216591018043	HMMPfam hit to PF00582, Universal stress protein family, score 8.1e-24
216591018044	Protein of unknown function (DUF3005); Region: DUF3005; pfam11448
216591018045	serine O-acetyltransferase; Region: cysE; TIGR01172
216591018046	Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of...; Region: LbH_SAT; cd03354
216591018047	trimer interface [polypeptide binding]; other site
216591018048	active site
216591018049	substrate binding site [chemical binding]; other site
216591018050	CoA binding site [chemical binding]; other site
216591018051	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.52
216591018052	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 11
216591018053	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 8.6
216591018054	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591018055	short chain dehydrogenase; Provisional; Region: PRK09134
216591018056	NAD(P) binding site [chemical binding]; other site
216591018057	active site
216591018058	HMMPfam hit to PF00106, short chain dehydrogenase, score 1e-07
216591018059	GTP cyclohydrolase I; Provisional; Region: folE; PRK09347
216591018060	GTP cyclohydrolase I; Provisional; Region: PLN03044
216591018061	active site
216591018062	HMMPfam hit to PF01227, GTP cyclohydrolase I, score 5.1e-44
216591018063	PS00859 GTP cyclohydrolase I signature 1.
216591018064	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591018065	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591018066	The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_NahR_LinR_like; cd08459
216591018067	substrate binding pocket [chemical binding]; other site
216591018068	dimerization interface [polypeptide binding]; other site
216591018069	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.5e-23
216591018070	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.4e-18
216591018071	Predicted helix-turn-helix motif with score 1285.000, SD 3.56 at aa 19-40, sequence RNVSRAGDLLGVSQPRVSTALG
216591018072	4-hydroxybenzoate 3-monooxygenase; Validated; Region: PRK08243
216591018073	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591018074	HMMPfam hit to PF01494, FAD binding domain, score 5.7e-108
216591018075	Coenzyme A transferase; Region: CoA_trans; cl17247
216591018076	HMMPfam hit to PF01144, Coenzyme A transferase, score 1.1e-93
216591018077	PS01273 CoA transferases signature 1.
216591018078	3-oxoacid CoA-transferase, B subunit; Region: pcaJ_scoB_fam; TIGR02428
216591018079	HMMPfam hit to PF01144, Coenzyme A transferase, score 2.7e-59
216591018080	PS01274 CoA transferases signature 2.
216591018081	3-carboxy-cis,cis-muconate cycloisomerase; Provisional; Region: PRK09053
216591018082	prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like; Region: pCLME; cd01597
216591018083	tetramer interface [polypeptide binding]; other site
216591018084	active site
216591018085	HMMPfam hit to PF00206, Lyase, score 1.9e-53
216591018086	PS00163 Fumarate lyases signature.
216591018087	3-oxoadipate enol-lactonase; Region: protocat_pcaD; TIGR02427
216591018088	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 8.7e-27
216591018089	4-carboxymuconolactone decarboxylase; Region: decarb_PcaC; TIGR02425
216591018090	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 7.5e-34
216591018091	benzoate transport; Region: 2A0115; TIGR00895
216591018092	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591018093	putative substrate translocation pore; other site
216591018094	HMMPfam hit to PF00083, Sugar (and other) transporter score 7.9e-07
216591018095	11 probable transmembrane helices predicted for BCAM0063 by TMHMM2.0 at aa 24-46, 61-83, 90-112, 117-136, 149-171, 175-197, 255-277, 292-314, 335-357, 380-402 and 409-431
216591018096	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.4e-48
216591018097	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018098	PS00216 Sugar transport proteins signature 1.
216591018099	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018100	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018101	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591018102	5 probable transmembrane helices predicted for BCAM0065 by TMHMM2.0 at aa 3-22, 42-64, 71-93, 147-169 and 182-204
216591018103	HMMPfam hit to PF01810, LysE type translocator, score 4.8e-05
216591018104	Similar to the N-terminal region of Burkholderia cepacia insertion element IS402 hypothetical 16.2 kDa protein SWALL:YI22_BURCE (SWALL:P24537) (147 aa) fasta scores: E(): 1e-07, 45.78% id in 83 aa
216591018105	FAD-NAD(P)-binding; Region: NAD_binding_9; pfam13454
216591018106	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018107	PS00215 Mitochondrial energy transfer proteins signature.
216591018108	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591018109	short chain dehydrogenase; Provisional; Region: PRK07041
216591018110	NAD(P) binding site [chemical binding]; other site
216591018111	active site
216591018112	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.8e-07
216591018113	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0033
216591018114	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591018115	14 probable transmembrane helices predicted for BCAM0068 by TMHMM2.0 at aa 32-54, 74-93, 100-122, 126-143, 156-178, 182-204, 216-238, 248-270, 283-305, 320-339, 346-368, 378-400, 421-438 and 442-464
216591018116	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.4e-54
216591018117	GH3 auxin-responsive promoter; Region: GH3; pfam03321
216591018118	HMMPfam hit to PF03321, GH3 auxin-responsive promoter, score 1.9e-09
216591018119	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
216591018120	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591018121	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 0.00025
216591018122	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]; Region: COG4948
216591018123	Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion; Region: enolase_like; cl17188
216591018124	metal binding site [ion binding]; metal-binding site
216591018125	substrate binding pocket [chemical binding]; other site
216591018126	HMMPfam hit to PF01188, Mandelate racemase / muconate lactonizing en, score 5.4e-08
216591018127	PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.
216591018128	acetolactate synthase catalytic subunit; Validated; Region: PRK08327
216591018129	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591018130	PYR/PP interface [polypeptide binding]; other site
216591018131	dimer interface [polypeptide binding]; other site
216591018132	TPP binding site [chemical binding]; other site
216591018133	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591018134	Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629
216591018135	TPP-binding site [chemical binding]; other site
216591018136	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 1.6e-08
216591018137	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 3.1e-22
216591018138	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
216591018139	transcriptional repressor BetI; Region: betaine_BetI; TIGR03384
216591018140	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591018141	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 2.7e-17
216591018142	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591018143	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591018144	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.9e-13
216591018145	3-(3-hydroxyphenyl)propionate hydroxylase; Validated; Region: mhpA; PRK06183
216591018146	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591018147	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591018148	HMMPfam hit to PF01494, FAD binding domain, score 2.3e-59
216591018149	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018150	N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase; Region: THT_Oxygenase_N; cd07267
216591018151	3,4-dihydroxyphenylacetate 2,3-dioxygenase; Region: HpaD; TIGR02295
216591018152	The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway; Region: THT_oxygenase_C; cd07257
216591018153	putative active site [active]
216591018154	putative metal binding site [ion binding]; other site
216591018155	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 0.0017
216591018156	Domain of unknown function (DUF2437); Region: DUF2437; pfam10370
216591018157	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
216591018158	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591018159	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 6.9e-36
216591018160	AMP-binding domain protein; Validated; Region: PRK07529
216591018161	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591018162	Uncharacterized subfamily of fatty acid CoA ligase (FACL); Region: FACL_like_4; cd05944
216591018163	acyl-activating enzyme (AAE) consensus motif; other site
216591018164	putative AMP binding site [chemical binding]; other site
216591018165	putative active site [active]
216591018166	putative CoA binding site [chemical binding]; other site
216591018167	HMMPfam hit to PF00501, AMP-binding enzyme, score 8.4e-79
216591018168	PS00455 Putative AMP-binding domain signature.
216591018169	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018170	Outer membrane protein W [Cell envelope biogenesis, outer membrane]; Region: OmpW; COG3047
216591018171	HMMPfam hit to PF03922, OmpW family, score 1.2e-17
216591018172	Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726
216591018173	Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands; Region: CE4_NodB_like_5s_6s; cd10918
216591018174	putative active site [active]
216591018175	putative metal binding site [ion binding]; other site
216591018176	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 4.6e-26
216591018177	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591018178	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
216591018179	HMMPfam hit to PF00534, Glycosyl transferases group, score 5e-18
216591018180	transcriptional repressor BetI; Region: betaine_BetI; TIGR03384
216591018181	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591018182	Bacterial transcriptional repressor; Region: TetR_C_6; pfam13977
216591018183	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 4.5e-16
216591018184	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
216591018185	Sodium:dicarboxylate symporter family; Region: SDF; pfam00375
216591018186	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 4e-110
216591018187	7 probable transmembrane helices predicted for BCAM0086 by TMHMM2.0 at aa 7-29, 56-78, 85-107, 154-171, 192-214, 227-249 and 315-337
216591018188	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018189	SMP-30/Gluconolaconase/LRE-like region; Region: SGL; pfam08450
216591018190	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018191	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018192	PPIC-type PPIASE domain; Region: Rotamase_2; pfam13145
216591018193	HMMPfam hit to PF00639, PPIC-type PPIASE domain, score 0.00011
216591018194	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
216591018195	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591018196	Coenzyme A binding pocket [chemical binding]; other site
216591018197	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.5e-08
216591018198	MASE1; Region: MASE1; pfam05231
216591018199	PAS fold; Region: PAS_3; pfam08447
216591018200	8 probable transmembrane helices predicted for BCAM0091 by TMHMM2.0 at aa 9-26, 36-54, 59-76, 80-102, 114-136, 151-173, 186-204 and 214-236
216591018201	HMMPfam hit to PF05231, MASE1, score 2.6e-41
216591018202	HMMPfam hit to PF08447, PAS fold, score 0.0013
216591018203	Esterase/lipase [General function prediction only]; Region: COG1647
216591018204	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
216591018205	Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators; Region: HTH_MerR-like; cd00592
216591018206	DNA binding residues [nucleotide binding]
216591018207	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018208	HMMPfam hit to PF00376, MerR family regulatory protein, score 3.9e-09
216591018209	PS00552 Bacterial regulatory proteins, merR family signature.
216591018210	Predicted helix-turn-helix motif with score 1159.000, SD 3.13 at aa 8-29, sequence LNASAAAARLGVSIKALRLYER
216591018211	Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases; Region: FGGY_D-XK_EcXK-like; cd07808
216591018212	N- and C-terminal domain interface [polypeptide binding]; other site
216591018213	D-xylulose kinase; Region: XylB; TIGR01312
216591018214	active site
216591018215	MgATP binding site [chemical binding]; other site
216591018216	catalytic site [active]
216591018217	metal binding site [ion binding]; metal-binding site
216591018218	xylulose binding site [chemical binding]; other site
216591018219	homodimer interface [polypeptide binding]; other site
216591018220	HMMPfam hit to PF02782, FGGY family of carbohydrate kinases, C-termi, score 4.3e-45
216591018221	PS00445 FGGY family of carbohydrate kinases signature 2.
216591018222	HMMPfam hit to PF00370, FGGY family of carbohydrate kinases, N-termi, score 6.1e-87
216591018223	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591018224	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591018225	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591018226	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.0001
216591018227	PS00041 Bacterial regulatory proteins, araC family signature.
216591018228	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.4e-05
216591018229	Predicted helix-turn-helix motif with score 1306.000, SD 3.64 at aa 198-219, sequence LREADVAAFAGMSVSTFTRFFR
216591018230	glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650
216591018231	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
216591018232	Walker A/P-loop; other site
216591018233	ATP binding site [chemical binding]; other site
216591018234	Q-loop/lid; other site
216591018235	ABC transporter signature motif; other site
216591018236	Walker B; other site
216591018237	D-loop; other site
216591018238	H-loop/switch region; other site
216591018239	HMMPfam hit to PF08402, TOBE domain, score 1.1e-14
216591018240	HMMPfam hit to PF03459, TOBE domain, score 1.9e-05
216591018241	HMMPfam hit to PF00005, ABC transporter score 6.6e-59
216591018242	PS00211 ABC transporters family signature.
216591018243	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018244	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
216591018245	Sorbitol dehydrogenase; Region: sorbitol_DH; cd05285
216591018246	inhibitor binding site; inhibition site
216591018247	catalytic Zn binding site [ion binding]; other site
216591018248	structural Zn binding site [ion binding]; other site
216591018249	NADP binding site [chemical binding]; other site
216591018250	tetramer interface [polypeptide binding]; other site
216591018251	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 8.9e-24
216591018252	1 probable transmembrane helix predicted for BCAM0097 by TMHMM2.0 at aa 168-190
216591018253	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.6e-34
216591018254	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591018255	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
216591018256	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591018257	dimer interface [polypeptide binding]; other site
216591018258	conserved gate region; other site
216591018259	putative PBP binding loops; other site
216591018260	ABC-ATPase subunit interface; other site
216591018261	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.7e-06
216591018262	6 probable transmembrane helices predicted for BCAM0098 by TMHMM2.0 at aa 7-29, 73-95, 107-129, 139-161, 181-203 and 239-261
216591018263	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591018264	ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]; Region: UgpA; COG1175
216591018265	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.00053
216591018266	6 probable transmembrane helices predicted for BCAM0099 by TMHMM2.0 at aa 38-60, 99-121, 145-167, 182-204, 225-247 and 289-311
216591018267	PS00211 ABC transporters family signature.
216591018268	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
216591018269	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
216591018270	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 7.4e-25
216591018271	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018272	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
216591018273	Amidohydrolase; Region: Amidohydro_2; pfam04909
216591018274	HMMPfam hit to PF04909, Amidohydrolase, score 1.4e-33
216591018275	Uncharacterized conserved protein [Function unknown]; Region: COG3391
216591018276	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591018277	D-galactonate transporter; Region: 2A0114; TIGR00893
216591018278	putative substrate translocation pore; other site
216591018279	HMMPfam hit to PF00083, Sugar (and other) transporter score 0.00019
216591018280	12 probable transmembrane helices predicted for BCAM0103 by TMHMM2.0 at aa 22-44, 59-78, 91-113, 117-139, 152-174, 178-200, 248-270, 285-307, 314-336, 340-362, 375-397 and 402-424
216591018281	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.8e-67
216591018282	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018283	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018284	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
216591018285	Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408
216591018286	inhibitor site; inhibition site
216591018287	active site
216591018288	dimer interface [polypeptide binding]; other site
216591018289	catalytic residue [active]
216591018290	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 3.3e-10
216591018291	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]; Region: COG4948
216591018292	Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic...; Region: MR_like_2; cd03327
216591018293	putative active site pocket [active]
216591018294	putative metal binding site [ion binding]; other site
216591018295	HMMPfam hit to PF01188, Mandelate racemase / muconate lactonizing en, score 1.4e-09
216591018296	HMMPfam hit to PF02746, Mandelate racemase / muconate lactonizing en, score 2.9e-21
216591018297	4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed; Region: pdxA; PRK00232
216591018298	4-hydroxythreonine-4-phosphate dehydrogenase; Validated; Region: pdxA; PRK03743
216591018299	HMMPfam hit to PF04166, Pyridoxal phosphate biosynthetic protein Pdx, score 2e-96
216591018300	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591018301	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591018302	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591018303	dimerization interface [polypeptide binding]; other site
216591018304	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.3e-20
216591018305	Predicted helix-turn-helix motif with score 1421.000, SD 4.03 at aa 32-53, sequence STLRAAAEQMGLTQPAATKMLA
216591018306	PS00044 Bacterial regulatory proteins, lysR family signature.
216591018307	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.2e-27
216591018308	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591018309	D-galactonate transporter; Region: 2A0114; TIGR00893
216591018310	putative substrate translocation pore; other site
216591018311	HMMPfam hit to PF00083, Sugar (and other) transporter score 0.00026
216591018312	10 probable transmembrane helices predicted for BCAM0108 by TMHMM2.0 at aa 12-34, 47-69, 76-98, 163-185, 222-244, 254-276, 289-311, 316-338, 351-373 and 378-400
216591018313	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-59
216591018314	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018315	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
216591018316	4 probable transmembrane helices predicted for BCAM0109 by TMHMM2.0 at aa 32-54, 58-80, 106-128 and 143-165
216591018317	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591018318	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591018319	dimer interface [polypeptide binding]; other site
216591018320	phosphorylation site [posttranslational modification]
216591018321	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591018322	Mg2+ binding site [ion binding]; other site
216591018323	G-X-G motif; other site
216591018324	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 3e-34
216591018325	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 5e-11
216591018326	HMMPfam hit to PF00672, HAMP domain, score 2.2e-09
216591018327	2 probable transmembrane helices predicted for BCAM0110 by TMHMM2.0 at aa 12-34 and 56-78
216591018328	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591018329	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591018330	active site
216591018331	phosphorylation site [posttranslational modification]
216591018332	intermolecular recognition site; other site
216591018333	dimerization interface [polypeptide binding]; other site
216591018334	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591018335	DNA binding site [nucleotide binding]
216591018336	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1.2e-14
216591018337	HMMPfam hit to PF00072, Response regulator receiver domain, score 7.5e-36
216591018338	Monoamine oxidase [Amino acid transport and metabolism]; Region: COG1231
216591018339	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591018340	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00058
216591018341	HMMPfam hit to PF01593, Flavin containing amine oxidoreductase, score 1.7e-42
216591018342	Cytochrome c; Region: Cytochrom_C; cl11414
216591018343	Cytochrome c; Region: Cytochrom_C; cl11414
216591018344	1 probable transmembrane helix predicted for BCAM0113 by TMHMM2.0 at aa 12-34
216591018345	HMMPfam hit to PF00034, Cytochrome c, score 0.022
216591018346	PS00190 Cytochrome c family heme-binding site signature.
216591018347	HMMPfam hit to PF00034, Cytochrome c, score 0.017
216591018348	PS00190 Cytochrome c family heme-binding site signature.
216591018349	7 probable transmembrane helices predicted for BCAM0114 by TMHMM2.0 at aa 5-24, 31-53, 68-90, 97-116, 120-142, 149-171 and 181-203
216591018350	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591018351	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 6.3e-14
216591018352	Phytanoyl-CoA dioxygenase (PhyH); Region: PhyH; cl17312
216591018353	HMMPfam hit to PF05721, Phytanoyl-CoA dioxygenase (PhyH), score 4.6e-06
216591018354	YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgH_like; cd02198
216591018355	homotrimer interaction site [polypeptide binding]; other site
216591018356	putative active site [active]
216591018357	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 4.2e-31
216591018358	Protein of unknown function (DUF1329); Region: DUF1329; pfam07044
216591018359	HMMPfam hit to PF07044, Protein of unknown function (DUF1329), score 2.9e-114
216591018360	1 probable transmembrane helix predicted for BCAM0118 by TMHMM2.0 at aa 7-26
216591018361	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018362	Protein of unknown function (DUF1302); Region: DUF1302; pfam06980
216591018363	HMMPfam hit to PF06980, Protein of unknown function (DUF1302), score 5e-79
216591018364	Predicted exporters of the RND superfamily [General function prediction only]; Region: COG1033
216591018365	12 probable transmembrane helices predicted for BCAM0120 by TMHMM2.0 at aa 13-35, 227-249, 254-273, 283-305, 326-348, 363-385, 414-431, 618-635, 642-659, 669-688, 709-731 and 746-768
216591018366	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018367	PS00306 Caseins alpha/beta signature.
216591018368	Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]; Region: COG4447
216591018369	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.51
216591018370	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 7.7
216591018371	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 13
216591018372	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 2.8
216591018373	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.12
216591018374	Monoamine oxidase [Amino acid transport and metabolism]; Region: COG1231
216591018375	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 2.7e-06
216591018376	HMMPfam hit to PF01593, Flavin containing amine oxidoreductase, score 1.3e-46
216591018377	Cytochrome c; Region: Cytochrom_C; cl11414
216591018378	Cytochrome c; Region: Cytochrom_C; cl11414
216591018379	1 probable transmembrane helix predicted for BCAM0124 by TMHMM2.0 at aa 5-27
216591018380	PS00190 Cytochrome c family heme-binding site signature.
216591018381	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591018382	NAD(P) binding site [chemical binding]; other site
216591018383	HMMPfam hit to PF03435, Saccharopine dehydrogenase, score 4.9e-07
216591018384	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
216591018385	acyl-CoA synthetase; Validated; Region: PRK06188
216591018386	Bacterial Bile acid CoA ligases and similar proteins; Region: BACL_like; cd05929
216591018387	acyl-activating enzyme (AAE) consensus motif; other site
216591018388	putative AMP binding site [chemical binding]; other site
216591018389	putative active site [active]
216591018390	putative CoA binding site [chemical binding]; other site
216591018391	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.2e-111
216591018392	PS00455 Putative AMP-binding domain signature.
216591018393	lipid-transfer protein; Provisional; Region: PRK08256
216591018394	Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal...; Region: SCP-x_thiolase; cd00829
216591018395	active site
216591018396	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 1e-06
216591018397	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591018398	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591018399	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.5e-85
216591018400	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591018401	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591018402	Bacterial transcriptional repressor; Region: TetR_C_6; pfam13977
216591018403	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 1.2e-08
216591018404	Predicted helix-turn-helix motif with score 1673.000, SD 4.89 at aa 53-74, sequence FSQRAVAAAAGISVSNLQYYFP
216591018405	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591018406	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591018407	active site
216591018408	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 3e-20
216591018409	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 6.5e-09
216591018410	chaperone protein HchA; Provisional; Region: PRK04155
216591018411	Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020
216591018412	conserved cys residue [active]
216591018413	HMMPfam hit to PF01965, DJ-1/PfpI family, score 0.0028
216591018414	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187
216591018415	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591018416	acyl-activating enzyme (AAE) consensus motif; other site
216591018417	AMP binding site [chemical binding]; other site
216591018418	active site
216591018419	CoA binding site [chemical binding]; other site
216591018420	HMMPfam hit to PF00501, AMP-binding enzyme, score 3.9e-86
216591018421	ATP-dependent transcriptional regulator [Transcription]; Region: MalT; COG2909
216591018422	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591018423	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591018424	DNA binding residues [nucleotide binding]
216591018425	dimerization interface [polypeptide binding]; other site
216591018426	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018427	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018428	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 6.8e-20
216591018429	PS00622 Bacterial regulatory proteins, luxR family signature.
216591018430	Predicted helix-turn-helix motif with score 1736.000, SD 5.10 at aa 869-890, sequence LSNKEIARALRVAPETIKWHLK
216591018431	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591018432	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591018433	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591018434	dimerization interface [polypeptide binding]; other site
216591018435	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.4e-38
216591018436	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.2e-18
216591018437	Predicted helix-turn-helix motif with score 1474.000, SD 4.21 at aa 16-37, sequence RTLRRAAQTLGVDQATVGRRLA
216591018438	PIG3 p53-inducible quinone oxidoreductase; Region: p53_inducible_oxidoreductase; cd05276
216591018439	putative NAD(P)H quinone oxidoreductase, PIG3 family; Region: quinone_pig3; TIGR02824
216591018440	NAD(P) binding site [chemical binding]; other site
216591018441	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.2e-23
216591018442	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2e-39
216591018443	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591018444	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591018445	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591018446	putative effector binding pocket; other site
216591018447	dimerization interface [polypeptide binding]; other site
216591018448	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.3e-14
216591018449	Predicted helix-turn-helix motif with score 1361.000, SD 3.82 at aa 17-38, sequence GSFSAVAKQTDVATAQVSRAVA
216591018450	HMMPfam hit to PF03466, LysR substrate binding domain, score 1e-33
216591018451	BON domain; Region: BON; cl02771
216591018452	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
216591018453	catalytic core [active]
216591018454	HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 2.9e-15
216591018455	Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs); Region: ACAD10_11_like; cd05154
216591018456	Phosphotransferase enzyme family; Region: APH; pfam01636
216591018457	putative active site [active]
216591018458	putative substrate binding site [chemical binding]; other site
216591018459	ATP binding site [chemical binding]; other site
216591018460	HMMPfam hit to PF01636, Phosphotransferase enzyme family, score 1.3e-51
216591018461	PS00109 Tyrosine protein kinases specific active-site signature.
216591018462	short chain dehydrogenase; Provisional; Region: PRK07035
216591018463	classical (c) SDRs; Region: SDR_c; cd05233
216591018464	NAD(P) binding site [chemical binding]; other site
216591018465	active site
216591018466	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.6e-28
216591018467	PS00061 Short-chain dehydrogenases/reductases family signature.
216591018468	3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK07231
216591018469	classical (c) SDRs; Region: SDR_c; cd05233
216591018470	NAD(P) binding site [chemical binding]; other site
216591018471	active site
216591018472	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.9e-26
216591018473	PS00061 Short-chain dehydrogenases/reductases family signature.
216591018474	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591018475	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591018476	active site
216591018477	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 3.1e-23
216591018478	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 1.2e-43
216591018479	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 9.2e-07
216591018480	leucine transcriptional activator; Reviewed; Region: leuO; PRK09508
216591018481	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591018482	The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold; Region: PBP2_Nitroaromatics_like; cd08417
216591018483	substrate binding pocket [chemical binding]; other site
216591018484	dimerization interface [polypeptide binding]; other site
216591018485	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-19
216591018486	Predicted helix-turn-helix motif with score 1798.000, SD 5.31 at aa 21-42, sequence RNLTRAAEVLNLTQPAVSNALA
216591018487	PS00044 Bacterial regulatory proteins, lysR family signature.
216591018488	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.9e-18
216591018489	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
216591018490	HSP70 interaction site [polypeptide binding]; other site
216591018491	HMMPfam hit to PF00226, DnaJ domain, score 0.0049
216591018492	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591018493	1 probable transmembrane helix predicted for BCAM0145 by TMHMM2.0 at aa 5-27
216591018494	DNA polymerase II; Reviewed; Region: PRK05762
216591018495	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases; Region: DNA_polB_II_exo; cd05784
216591018496	active site
216591018497	catalytic site [active]
216591018498	substrate binding site [chemical binding]; other site
216591018499	DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as...; Region: POLBc_Pol_II; cd05537
216591018500	active site
216591018501	metal-binding site
216591018502	HMMPfam hit to PF00136, DNA polymerase family B, score 1.3e-27
216591018503	PS00116 DNA polymerase family B signature.
216591018504	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018505	HMMPfam hit to PF03104, DNA polymerase family B, exonuclease do, score 5.9e-16
216591018506	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591018507	Uncharacterized protein conserved in bacteria [Function unknown]; Region: VgrG; COG3501
216591018508	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591018509	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591018510	Putative type VI secretion system Rhs element Vgr; Region: T6SS_Vgr; pfam13296
216591018511	Uncharacterized protein conserved in bacteria (DUF2345); Region: DUF2345; pfam10106
216591018512	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 2.7e-27
216591018513	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
216591018514	Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502
216591018515	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
216591018516	putative active site [active]
216591018517	catalytic site [active]
216591018518	Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502
216591018519	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
216591018520	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
216591018521	putative active site [active]
216591018522	catalytic site [active]
216591018523	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018524	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
216591018525	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.5
216591018526	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.0036
216591018527	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591018528	Sel1-like repeats; Region: SEL1; smart00671
216591018529	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018530	HMMPfam hit to PF08238, Sel1 repeat, score 1.1e-06
216591018531	Probable gene remnant. Similar to the N-terminal region of Neisseria meningitidis hypothetical protein NMB1470 SWALL:Q9JYR0 (EMBL:AE002496) (181 aa) fasta scores: E(): 3.7, 46.51% id in 43 aa
216591018532	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018533	Probable gene remnant. Similar to the C-terminal region of Ralstonia solanacearum probable phospholipase rs03737 SWALL:Q8XS51 (EMBL:AL646079) (652 aa) fasta scores: E(): 1e-16, 50% id in 120 aa
216591018534	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591018535	Sel1-like repeats; Region: SEL1; smart00671
216591018536	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018537	HMMPfam hit to PF08238, Sel1 repeat, score 4.4e-08
216591018538	2-keto-3-deoxygluconate permease; Provisional; Region: PRK05274
216591018539	HMMPfam hit to PF03812, 2-keto-3-deoxygluconate permease, score 4.4e-198
216591018540	10 probable transmembrane helices predicted for BCAM0153 by TMHMM2.0 at aa 13-32, 42-64, 77-96, 106-128, 141-163, 168-187, 194-216, 226-244, 251-273 and 283-305
216591018541	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018542	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591018543	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018544	5-keto-4-deoxyuronate isomerase; Provisional; Region: PRK00924
216591018545	HMMPfam hit to PF04962, 5-keto 4-deoxyuronate isomerase, score 7.2e-176
216591018546	2-deoxy-D-gluconate 3-dehydrogenase; Region: kduD; TIGR01832
216591018547	gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Region: Ga5DH-like_SDR_c; cd05347
216591018548	NADP binding site [chemical binding]; other site
216591018549	homodimer interface [polypeptide binding]; other site
216591018550	active site
216591018551	HMMPfam hit to PF00106, short chain dehydrogenase, score 7.5e-29
216591018552	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018553	PS00061 Short-chain dehydrogenases/reductases family signature.
216591018554	DNA-binding transcriptional regulator KdgR; Provisional; Region: PRK15090
216591018555	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591018556	putative DNA binding site [nucleotide binding]; other site
216591018557	putative Zn2+ binding site [ion binding]; other site
216591018558	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591018559	HMMPfam hit to PF08279, HTH domain, score 0.0022
216591018560	Predicted helix-turn-helix motif with score 1838.000, SD 5.45 at aa 57-78, sequence IGISELSHQLGMSKTTVHRFLQ
216591018561	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 7e-46
216591018562	PS01051 Bacterial regulatory proteins, iclR family signature.
216591018563	Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]; Region: COG4943
216591018564	CSS motif domain associated with EAL; Region: CSS-motif; pfam12792
216591018565	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591018566	HMMPfam hit to PF00563, EAL domain, score 2.5e-84
216591018567	2 probable transmembrane helices predicted for BCAM0158 by TMHMM2.0 at aa 4-20 and 229-251
216591018568	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591018569	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591018570	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591018571	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.4e-07
216591018572	Predicted helix-turn-helix motif with score 1299.000, SD 3.61 at aa 254-275, sequence VSIEQIASDLHVSSRTLHRRLA
216591018573	Sterol desaturase [Lipid metabolism]; Region: ERG3; COG3000
216591018574	Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; pfam04116
216591018575	4 probable transmembrane helices predicted for BCAM0162 by TMHMM2.0 at aa 15-37, 58-80, 90-109 and 142-161
216591018576	4 probable transmembrane helices predicted for BCAM0163 by TMHMM2.0 at aa 21-38, 42-64, 71-90 and 94-116
216591018577	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018578	Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP; cl11399
216591018579	HMMPfam hit to PF00328, Histidine acid phosphatase, score 0.00035
216591018580	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018581	pyrophosphatase PpaX; Provisional; Region: PRK13288
216591018582	NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252
216591018583	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591018584	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0016
216591018585	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 1.9e-16
216591018586	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 2e-12
216591018587	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591018588	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591018589	The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold; Region: PBP2_CbbR_RubisCO_like; cd08419
216591018590	putative dimerization interface [polypeptide binding]; other site
216591018591	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1e-21
216591018592	Predicted helix-turn-helix motif with score 1382.000, SD 3.89 at aa 24-45, sequence GSVSRAAEELNLTQPAVSLQVR
216591018593	PS00044 Bacterial regulatory proteins, lysR family signature.
216591018594	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.7e-55
216591018595	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591018596	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591018597	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591018598	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 8.8e-07
216591018599	Predicted helix-turn-helix motif with score 1440.000, SD 4.09 at aa 202-223, sequence MTLAELAALVSISVPHFKVLFR
216591018600	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.2e-06
216591018601	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
216591018602	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591018603	NAD(P) binding site [chemical binding]; other site
216591018604	active site
216591018605	HMMPfam hit to PF05368, NmrA-like family, score 0.0016
216591018606	benzoate transporter; Region: benE; TIGR00843
216591018607	Benzoate membrane transport protein; Region: BenE; pfam03594
216591018608	12 probable transmembrane helices predicted for BCAM0170 by TMHMM2.0 at aa 21-43, 53-72, 79-101, 105-124, 131-153, 157-176, 181-203, 223-245, 265-287, 302-324, 329-351 and 371-393
216591018609	HMMPfam hit to PF03594, Benzoate membrane transport protein, score 1.4e-204
216591018610	HMMPfam hit to PF00860, Permease family, score 0.0024
216591018611	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018612	Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family...; Region: DesA_FADS-like; cd03509
216591018613	Fatty acid desaturase; Region: FA_desaturase; pfam00487
216591018614	putative di-iron ligands [ion binding]; other site
216591018615	HMMPfam hit to PF00487, Fatty acid desaturase, score 8.9e-08
216591018616	3 probable transmembrane helices predicted for BCAM0171 by TMHMM2.0 at aa 26-46, 180-202 and 206-228
216591018617	ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: PhnD; COG3221
216591018618	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018619	ATP-dependent RNA helicase DbpA; Provisional; Region: PRK11776
216591018620	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
216591018621	ATP binding site [chemical binding]; other site
216591018622	Mg++ binding site [ion binding]; other site
216591018623	motif III; other site
216591018624	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591018625	nucleotide binding region [chemical binding]; other site
216591018626	ATP-binding site [chemical binding]; other site
216591018627	RNA recognition motif in Escherichia coli RNA helicase dbpA and similar proteins; Region: RRM_EcDbpA_like; cd12501
216591018628	putative RNA binding site [nucleotide binding]; other site
216591018629	HMMPfam hit to PF03880, DbpA RNA binding domain, score 5.2e-22
216591018630	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 7.7e-28
216591018631	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 1.6e-68
216591018632	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
216591018633	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018634	malate:quinone oxidoreductase; Validated; Region: PRK05257
216591018635	malate:quinone-oxidoreductase; Region: mal_quin_oxido; TIGR01320
216591018636	HMMPfam hit to PF06039, Malate:quinone oxidoreductase (Mqo), score 0
216591018637	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0001
216591018638	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018639	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591018640	AsnC-type helix-turn-helix domain; Region: HTH_AsnC-type; pfam13404
216591018641	AsnC family; Region: AsnC_trans_reg; pfam01037
216591018642	HMMPfam hit to PF01037, AsnC family, score 1.5e-25
216591018643	Histone deacetylase class IIa; Region: HDAC_classII_APAH; cd10001
216591018644	Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123
216591018645	active site
216591018646	Zn binding site [ion binding]; other site
216591018647	HMMPfam hit to PF00850, Histone deacetylase domain, score 4.1e-60
216591018648	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591018649	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591018650	dimerization interface [polypeptide binding]; other site
216591018651	ligand binding site [chemical binding]; other site
216591018652	HMMPfam hit to PF01094, Receptor family ligand binding region, score 2.5e-57
216591018653	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
216591018654	Mechanosensitive ion channel; Region: MS_channel; pfam00924
216591018655	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 5.4e-56
216591018656	3 probable transmembrane helices predicted for BCAM0179 by TMHMM2.0 at aa 13-35, 59-81 and 88-110
216591018657	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
216591018658	Peptidase family M23; Region: Peptidase_M23; pfam01551
216591018659	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591018660	HMMPfam hit to PF01551, Peptidase family M23, score 3.4e-41
216591018661	Catalase-like heme-binding proteins similar to the uncharacterized srpA; Region: srpA_like; cd08153
216591018662	putative heme binding pocket [chemical binding]; other site
216591018663	1 probable transmembrane helix predicted for BCAM0181 by TMHMM2.0 at aa 13-35
216591018664	HMMPfam hit to PF00199, Catalase, score 2.2e-06
216591018665	PS00287 Cysteine proteases inhibitors signature.
216591018666	Cytochrome B561 [Energy production and conversion]; Region: CybB; COG3038
216591018667	HMMPfam hit to PF01292, Cytochrome b561 family, score 6e-40
216591018668	4 probable transmembrane helices predicted for BCAM0182 by TMHMM2.0 at aa 21-43, 48-70, 97-119 and 150-172
216591018669	Autotransporter-associated beta strand repeat; Region: Autotrns_rpt; cl15373
216591018670	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
216591018671	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
216591018672	Autotransporter beta-domain; Region: Autotransporter; pfam03797
216591018673	1 probable transmembrane helix predicted for BCAM0183 by TMHMM2.0 at aa 7-29
216591018674	HMMPfam hit to PF05594, no description, score 0.2
216591018675	HMMPfam hit to PF03212, Pertactin, score 0.0003
216591018676	HMMPfam hit to PF03797, Autotransporter beta-domain, score 3.4e-34
216591018677	Fucose-binding lectin II (PA-IIL); Region: PA-IIL; pfam07472
216591018678	HMMPfam hit to PF07472, Fucose-binding lectin II (PA-IIL), score 6.8e-41
216591018679	N-Terminal Domain Of Bc2l-C Lectin; Region: Bc2l-C_N; cd12211
216591018680	trimer interface [polypeptide binding]; other site
216591018681	ligand binding site [chemical binding]; other site
216591018682	Fucose-binding lectin II (PA-IIL); Region: PA-IIL; pfam07472
216591018683	HMMPfam hit to PF07472, Fucose-binding lectin II (PA-IIL), score 8.8e-39
216591018684	Fucose-binding lectin II (PA-IIL); Region: PA-IIL; pfam07472
216591018685	HMMPfam hit to PF07472, Fucose-binding lectin II (PA-IIL), score 2.8e-18
216591018686	2-isopropylmalate synthase; Validated; Region: PRK03739
216591018687	Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_LeuA; cd07942
216591018688	active site
216591018689	catalytic residues [active]
216591018690	metal binding site [ion binding]; metal-binding site
216591018691	LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; smart00917
216591018692	PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1.
216591018693	HMMPfam hit to PF00682, HMGL-like, score 1e-92
216591018694	PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2.
216591018695	HMMPfam hit to PF08502, LeuA allosteric (dimerisation) domain, score 1.8e-25
216591018696	Autoinducer binding domain; Region: Autoind_bind; pfam03472
216591018697	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591018698	DNA binding residues [nucleotide binding]
216591018699	dimerization interface [polypeptide binding]; other site
216591018700	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 1.7e-16
216591018701	PS00622 Bacterial regulatory proteins, luxR family signature.
216591018702	Predicted helix-turn-helix motif with score 1238.000, SD 3.40 at aa 191-212, sequence KTAYEIGMIFGIAERTVKFHLQ
216591018703	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018704	HMMPfam hit to PF03472, Autoinducer binding domain, score 3.5e-27
216591018705	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591018706	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591018707	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591018708	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 3.6e-08
216591018709	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591018710	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 3.5e-05
216591018711	PS00041 Bacterial regulatory proteins, araC family signature.
216591018712	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 4.7e-07
216591018713	hypothetical protein; Provisional; Region: PRK07481
216591018714	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591018715	inhibitor-cofactor binding pocket; inhibition site
216591018716	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591018717	catalytic residue [active]
216591018718	HMMPfam hit to PF00202, Aminotransferase class-III, score 4.2e-125
216591018719	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591018720	Condensation domain; Region: Condensation; pfam00668
216591018721	HMMPfam hit to PF00668, Condensation domain, score 2.1e-11
216591018722	Protein of unknown function (DUF3050); Region: DUF3050; pfam11251
216591018723	ChrR Cupin-like domain; Region: Cupin_7; pfam12973
216591018724	HMMPfam hit to PF07883, Cupin domain, score 0.00016
216591018725	P-aminobenzoate N-oxygenase AurF; Region: AurF; pfam11583
216591018726	The adenylation domain of nonribosomal peptide synthetases (NRPS); Region: A_NRPS; cd05930
216591018727	amino acid adenylation domain; Region: AA-adenyl-dom; TIGR01733
216591018728	acyl-activating enzyme (AAE) consensus motif; other site
216591018729	AMP binding site [chemical binding]; other site
216591018730	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
216591018731	thioester reductase domain; Region: Thioester-redct; TIGR01746
216591018732	extended (e) SDRs, subgroup 1; Region: SDR_e1; cd05235
216591018733	putative NAD(P) binding site [chemical binding]; other site
216591018734	active site
216591018735	putative substrate binding site [chemical binding]; other site
216591018736	HMMPfam hit to PF00501, AMP-binding enzyme, score 3.9e-133
216591018737	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 2.6e-14
216591018738	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 2e-05
216591018739	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 0.0028
216591018740	Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins; Region: PYR_PYL_RCAR_like; cd07821
216591018741	putative hydrophobic ligand binding site [chemical binding]; other site
216591018742	protein interface [polypeptide binding]; other site
216591018743	gate; other site
216591018744	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591018745	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591018746	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591018747	putative effector binding pocket; other site
216591018748	dimerization interface [polypeptide binding]; other site
216591018749	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-43
216591018750	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.6e-15
216591018751	Predicted helix-turn-helix motif with score 1734.000, SD 5.09 at aa 11-32, sequence GTFTETGKRLGITTAHVSRLVA
216591018752	Cupin domain; Region: Cupin_2; pfam07883
216591018753	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591018754	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591018755	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 7e-06
216591018756	PS00041 Bacterial regulatory proteins, araC family signature.
216591018757	Predicted helix-turn-helix motif with score 1603.000, SD 4.65 at aa 173-194, sequence VTLQAWARDAHMNERTLARAFK
216591018758	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 0.00094
216591018759	HMMPfam hit to PF07883, Cupin domain, score 1.1e-06
216591018760	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
216591018761	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018762	HMMPfam hit to PF02321, Outer membrane efflux protein, score 5.8e-27
216591018763	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.7e-29
216591018764	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591018765	Multidrug resistance efflux pump [Defense mechanisms]; Region: EmrA; COG1566
216591018766	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591018767	1 probable transmembrane helix predicted for BCAM0200 by TMHMM2.0 at aa 20-42
216591018768	HMMPfam hit to PF00529, HlyD family secretion protein, score 1.6e-44
216591018769	PS00850 Glycine radical signature.
216591018770	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591018771	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591018772	putative substrate translocation pore; other site
216591018773	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591018774	14 probable transmembrane helices predicted for BCAM0201 by TMHMM2.0 at aa 15-37, 57-79, 83-105, 112-134, 144-166, 173-195, 210-227, 240-258, 278-300, 313-332, 342-361, 374-396, 406-428 and 497-519
216591018775	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018776	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.9e-56
216591018777	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018778	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018779	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018780	PS00659 Glycosyl hydrolases family 5 signature.
216591018781	6 probable transmembrane helices predicted for BCAM0203 by TMHMM2.0 at aa 5-24, 59-81, 88-107, 112-129, 141-163 and 173-195
216591018782	12 probable transmembrane helices predicted for BCAM0204 by TMHMM2.0 at aa 7-29, 33-55, 78-100, 115-137, 146-168, 173-195, 215-234, 254-276, 297-319, 334-356, 363-385 and 390-412
216591018783	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018784	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018785	Polysaccharide pyruvyl transferase; Region: PS_pyruv_trans; pfam04230
216591018786	Polysaccharide pyruvyl transferase; Region: PS_pyruv_trans; pfam04230
216591018787	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
216591018788	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591018789	HMMPfam hit to PF00534, Glycosyl transferases group, score 1.9e-24
216591018790	tyrosine kinase; Provisional; Region: PRK11519
216591018791	Chain length determinant protein; Region: Wzz; pfam02706
216591018792	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
216591018793	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
216591018794	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591018795	2 probable transmembrane helices predicted for BCAM0207 by TMHMM2.0 at aa 23-45 and 440-459
216591018796	HMMPfam hit to PF02706, Chain length determinant protein, score 9.8e-38
216591018797	Low molecular weight phosphotyrosine protein phosphatase; Region: LMWPc; pfam01451
216591018798	Low molecular weight phosphatase family; Region: LMWPc; cd00115
216591018799	active site
216591018800	HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein, score 5.2e-32
216591018801	Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563
216591018802	polysaccharide export protein EpsE; Region: EpsE; TIGR03028
216591018803	SLBB domain; Region: SLBB; pfam10531
216591018804	HMMPfam hit to PF02563, Polysaccharide biosynthesis/export protei, score 1.7e-39
216591018805	CoA-binding domain; Region: CoA_binding_3; pfam13727
216591018806	Bacterial sugar transferase; Region: Bac_transf; pfam02397
216591018807	HMMPfam hit to PF02397, Bacterial sugar transferase, score 2e-29
216591018808	5 probable transmembrane helices predicted for BCAM0210 by TMHMM2.0 at aa 12-29, 39-61, 74-96, 106-125 and 279-298
216591018809	TPR repeat; Region: TPR_11; pfam13414
216591018810	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591018811	binding surface
216591018812	TPR motif; other site
216591018813	TPR repeat; Region: TPR_11; pfam13414
216591018814	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
216591018815	TPR motif; other site
216591018816	binding surface
216591018817	PS00017 ATP/GTP-binding site motif A (P-loop).
216591018818	3 probable transmembrane helices predicted for BCAM0213 by TMHMM2.0 at aa 10-29, 41-63 and 83-102
216591018819	Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of...; Region: Glyco_transf_25; cd06532
216591018820	HMMPfam hit to PF01755, Glycosyltransferase family 25 (LPS bi, score 1.2e-05
216591018821	PPIC-type PPIASE domain; Region: Rotamase_2; pfam13145
216591018822	1 probable transmembrane helix predicted for BCAM0215 by TMHMM2.0 at aa 7-29
216591018823	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018824	HMMPfam hit to PF00639, PPIC-type PPIASE domain, score 6.5e-05
216591018825	Helix-turn-helix domain; Region: HTH_37; pfam13744
216591018826	Toxin SymE, type I toxin-antitoxin system; Region: SymE_toxin; cl07446
216591018827	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591018828	dimer interface [polypeptide binding]; other site
216591018829	phosphorylation site [posttranslational modification]
216591018830	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591018831	ATP binding site [chemical binding]; other site
216591018832	Mg2+ binding site [ion binding]; other site
216591018833	G-X-G motif; other site
216591018834	Response regulator receiver domain; Region: Response_reg; pfam00072
216591018835	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591018836	active site
216591018837	phosphorylation site [posttranslational modification]
216591018838	intermolecular recognition site; other site
216591018839	dimerization interface [polypeptide binding]; other site
216591018840	HMMPfam hit to PF01627, Hpt domain, score 2.3e-06
216591018841	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.3e-29
216591018842	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 3.3e-41
216591018843	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 2.7e-20
216591018844	2 probable transmembrane helices predicted for BCAM0218 by TMHMM2.0 at aa 37-59 and 373-395
216591018845	Haemagglutinin; Region: HIM; pfam05662
216591018846	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591018847	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591018848	trimer interface [polypeptide binding]; other site
216591018849	Haemagglutinin; Region: HIM; pfam05662
216591018850	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591018851	trimer interface [polypeptide binding]; other site
216591018852	YadA-like C-terminal region; Region: YadA; pfam03895
216591018853	HMMPfam hit to PF05662, Haemagglutinin, score 2.9e-05
216591018854	HMMPfam hit to PF05658, Hep_Hag, score 0.00055
216591018855	HMMPfam hit to PF05658, Hep_Hag, score 0.003
216591018856	HMMPfam hit to PF05658, Hep_Hag, score 0.58
216591018857	HMMPfam hit to PF05658, Hep_Hag, score 2.5e-05
216591018858	HMMPfam hit to PF05662, Haemagglutinin, score 3.4e-06
216591018859	HMMPfam hit to PF05658, Hep_Hag, score 1.2
216591018860	HMMPfam hit to PF05658, Hep_Hag, score 0.00046
216591018861	HMMPfam hit to PF05662, Haemagglutinin, score 1.7e-08
216591018862	HMMPfam hit to PF05662, Haemagglutinin, score 7.5e-05
216591018863	HMMPfam hit to PF05662, Haemagglutinin, score 0.00013
216591018864	HMMPfam hit to PF05662, Haemagglutinin, score 7.5e-05
216591018865	HMMPfam hit to PF05662, Haemagglutinin, score 3.5e-06
216591018866	HMMPfam hit to PF05658, Hep_Hag, score 6.8e-05
216591018867	HMMPfam hit to PF05658, Hep_Hag, score 0.0029
216591018868	HMMPfam hit to PF05662, Haemagglutinin, score 2.4e-06
216591018869	HMMPfam hit to PF05658, Hep_Hag, score 0.05
216591018870	HMMPfam hit to PF05658, Hep_Hag, score 0.00062
216591018871	HMMPfam hit to PF05658, Hep_Hag, score 0.055
216591018872	HMMPfam hit to PF05658, Hep_Hag, score 0.012
216591018873	HMMPfam hit to PF05662, Haemagglutinin, score 1.3e-07
216591018874	HMMPfam hit to PF05662, Haemagglutinin, score 0.00013
216591018875	HMMPfam hit to PF05662, Haemagglutinin, score 0.00013
216591018876	HMMPfam hit to PF05662, Haemagglutinin, score 0.00027
216591018877	HMMPfam hit to PF05662, Haemagglutinin, score 0.00013
216591018878	HMMPfam hit to PF05662, Haemagglutinin, score 0.00013
216591018879	HMMPfam hit to PF05662, Haemagglutinin, score 0.00013
216591018880	HMMPfam hit to PF05662, Haemagglutinin, score 1e-06
216591018881	HMMPfam hit to PF05662, Haemagglutinin, score 0.00011
216591018882	HMMPfam hit to PF05662, Haemagglutinin, score 1.3e-06
216591018883	HMMPfam hit to PF05662, Haemagglutinin, score 0.0002
216591018884	HMMPfam hit to PF05662, Haemagglutinin, score 3.4e-05
216591018885	HMMPfam hit to PF05658, Hep_Hag, score 1.9
216591018886	HMMPfam hit to PF05658, Hep_Hag, score 0.0049
216591018887	HMMPfam hit to PF05658, Hep_Hag, score 1.6e-07
216591018888	HMMPfam hit to PF03895, YadA-like C-terminal region, score 4.4e-07
216591018889	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591018890	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
216591018891	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591018892	ligand binding site [chemical binding]; other site
216591018893	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591018894	HMMPfam hit to PF00691, OmpA family, score 1.7e-25
216591018895	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591018896	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591018897	active site
216591018898	phosphorylation site [posttranslational modification]
216591018899	intermolecular recognition site; other site
216591018900	dimerization interface [polypeptide binding]; other site
216591018901	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591018902	DNA binding residues [nucleotide binding]
216591018903	dimerization interface [polypeptide binding]; other site
216591018904	HMMPfam hit to PF00072, Response regulator receiver domain, score 9.2e-12
216591018905	HMMPfam hit to PF08281, Sigma-70, region, score 1.8e-05
216591018906	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 9.9e-18
216591018907	PS00622 Bacterial regulatory proteins, luxR family signature.
216591018908	Predicted helix-turn-helix motif with score 1045.000, SD 2.75 at aa 173-194, sequence LTVNEIADQLSRSKKTISTQKA
216591018909	transcriptional regulator RcsB; Provisional; Region: PRK10840
216591018910	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591018911	active site
216591018912	phosphorylation site [posttranslational modification]
216591018913	intermolecular recognition site; other site
216591018914	dimerization interface [polypeptide binding]; other site
216591018915	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591018916	DNA binding residues [nucleotide binding]
216591018917	dimerization interface [polypeptide binding]; other site
216591018918	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 6.7e-21
216591018919	PS00622 Bacterial regulatory proteins, luxR family signature.
216591018920	Predicted helix-turn-helix motif with score 1195.000, SD 3.26 at aa 169-190, sequence LSVNEIAEKLNRSKKTISTQKS
216591018921	HMMPfam hit to PF00072, Response regulator receiver domain, score 1e-11
216591018922	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591018923	trimer interface [polypeptide binding]; other site
216591018924	YadA-like, left-handed beta-roll; Region: LbR_YadA-like; cd12820
216591018925	trimer interface [polypeptide binding]; other site
216591018926	YadA-like C-terminal region; Region: YadA; pfam03895
216591018927	HMMPfam hit to PF03895, YadA-like C-terminal region, score 3.6e-07
216591018928	HMMPfam hit to PF05658, Hep_Hag, score 5.1e-06
216591018929	HMMPfam hit to PF05658, Hep_Hag, score 1.4e-05
216591018930	HMMPfam hit to PF05658, Hep_Hag, score 0.0013
216591018931	HMMPfam hit to PF05662, Haemagglutinin, score 2.8e-05
216591018932	HMMPfam hit to PF05658, Hep_Hag, score 0.48
216591018933	HMMPfam hit to PF05658, Hep_Hag, score 0.0026
216591018934	HMMPfam hit to PF05658, Hep_Hag, score 0.44
216591018935	HMMPfam hit to PF05658, Hep_Hag, score 0.26
216591018936	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591018937	trimer interface [polypeptide binding]; other site
216591018938	YadA-like C-terminal region; Region: YadA; pfam03895
216591018939	HMMPfam hit to PF03895, YadA-like C-terminal region, score 4.5e-15
216591018940	HMMPfam hit to PF05662, Haemagglutinin, score 7.6e-07
216591018941	HMMPfam hit to PF05658, Hep_Hag, score 0.0063
216591018942	HMMPfam hit to PF05658, Hep_Hag, score 2.6e-05
216591018943	HMMPfam hit to PF05658, Hep_Hag, score 0.071
216591018944	HMMPfam hit to PF05658, Hep_Hag, score 0.017
216591018945	HMMPfam hit to PF05662, Haemagglutinin, score 9.9e-05
216591018946	PS00583 pfkB family of carbohydrate kinases signature 1.
216591018947	HMMPfam hit to PF05662, Haemagglutinin, score 0.00024
216591018948	HMMPfam hit to PF05658, Hep_Hag, score 0.73
216591018949	HMMPfam hit to PF05658, Hep_Hag, score 0.16
216591018950	HMMPfam hit to PF05658, Hep_Hag, score 0.068
216591018951	Possible gene remnant. Partial similarity to Escherichia coli O6 putative adhesin. UniProt:Q8FCB2 (1778 aa) fasta scores: E()=1e-05, 36.527% id in 167 aa; contains two haemagglutinin motifs
216591018952	HMMPfam hit to PF05662, Haemagglutinin, score 7.4e-07
216591018953	Probable gene remnant. Similar to an internal region of Burkholderia xenovorans (strain LB400) outer membrane protein, putative autotransporter and adhesin UniProt:Q13WU9 (EMBL:CP000270 (810 aa) fasta scores: E()=3e-07, 51.190% id in 84 aa
216591018954	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591018955	dimer interface [polypeptide binding]; other site
216591018956	phosphorylation site [posttranslational modification]
216591018957	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591018958	ATP binding site [chemical binding]; other site
216591018959	Mg2+ binding site [ion binding]; other site
216591018960	G-X-G motif; other site
216591018961	Response regulator receiver domain; Region: Response_reg; pfam00072
216591018962	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591018963	active site
216591018964	phosphorylation site [posttranslational modification]
216591018965	intermolecular recognition site; other site
216591018966	dimerization interface [polypeptide binding]; other site
216591018967	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.8e-31
216591018968	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 5e-40
216591018969	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.2e-23
216591018970	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591018971	2 probable transmembrane helices predicted for BCAM0227 by TMHMM2.0 at aa 41-63 and 361-383
216591018972	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591018973	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591018974	DNA binding site [nucleotide binding]
216591018975	HMMPfam hit to PF00486, Transcriptional regulatory protein, C ter, score 6.1e-06
216591018976	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591018977	dimer interface [polypeptide binding]; other site
216591018978	phosphorylation site [posttranslational modification]
216591018979	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591018980	ATP binding site [chemical binding]; other site
216591018981	Mg2+ binding site [ion binding]; other site
216591018982	G-X-G motif; other site
216591018983	2 probable transmembrane helices predicted for BCAM0229 by TMHMM2.0 at aa 4-26 and 207-229
216591018984	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 7e-09
216591018985	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1e-30
216591018986	Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566
216591018987	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591018988	active site
216591018989	phosphorylation site [posttranslational modification]
216591018990	intermolecular recognition site; other site
216591018991	dimerization interface [polypeptide binding]; other site
216591018992	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591018993	DNA binding residues [nucleotide binding]
216591018994	dimerization interface [polypeptide binding]; other site
216591018995	HMMPfam hit to PF00072, Response regulator receiver domain, score 8.3e-28
216591018996	HMMPfam hit to PF08281, Sigma-70, region, score 0.0031
216591018997	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 1.2e-21
216591018998	PS00622 Bacterial regulatory proteins, luxR family signature.
216591018999	Predicted helix-turn-helix motif with score 1411.000, SD 3.99 at aa 166-187, sequence GSNKAIARALGLSPRTVETYRA
216591019000	Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]; Region: COG3637
216591019001	HMMPfam hit to PF02462, Opacity family porin protein, score 0.00046
216591019002	Cenocepacia Island; BcenGI11
216591019003	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591019004	dimerization interface [polypeptide binding]; other site
216591019005	putative DNA binding site [nucleotide binding]; other site
216591019006	putative Zn2+ binding site [ion binding]; other site
216591019007	HMMPfam hit to PF01022, Bacterial regulatory protein, arsR family, score 0.0026
216591019008	Predicted helix-turn-helix motif with score 1327.000, SD 3.71 at aa 33-54, sequence MPAGQIATLLDVPPSSLSFHLK
216591019009	Protein-tyrosine-phosphatase [Signal transduction mechanisms]; Region: Wzb; COG0394
216591019010	Low molecular weight phosphatase family; Region: LMWPc; cd00115
216591019011	active site
216591019012	HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein, score 4.9e-24
216591019013	Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]; Region: ACR3; COG0798
216591019014	arsenical-resistance protein; Region: acr3; TIGR00832
216591019015	10 probable transmembrane helices predicted for BCAM0235 by TMHMM2.0 at aa 21-43, 53-75, 96-115, 130-152, 165-184, 189-211, 233-252, 262-284, 297-319 and 324-346
216591019016	HMMPfam hit to PF01758, Sodium Bile acid symporter family, score 2.6e-29
216591019017	arsenical resistance protein ArsH; Region: resist_ArsH; TIGR02690
216591019018	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591019019	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 2.6e-54
216591019020	Multiple antibiotic transporter [Intracellular trafficking and secretion]; Region: MarC; COG2095
216591019021	HMMPfam hit to PF01914, MarC family integral membrane protein, score 2.2e-20
216591019022	5 probable transmembrane helices predicted for BCAM0237A by TMHMM2.0 at aa 10-32, 53-75, 120-142, 151-173 and 193-215
216591019023	Ion transport protein; Region: Ion_trans; pfam00520
216591019024	Ion channel; Region: Ion_trans_2; pfam07885
216591019025	4 probable transmembrane helices predicted for BCAM0238 by TMHMM2.0 at aa 43-65, 107-129, 166-188 and 230-252
216591019026	HMMPfam hit to PF07885, Ion channel, score 2.5e-15
216591019027	HMMPfam hit to PF00520, Ion transport protein, score 2.1e-22
216591019028	H-NS histone family; Region: Histone_HNS; pfam00816
216591019029	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
216591019030	Autoinducer synthetase; Region: Autoind_synth; cl17404
216591019031	HMMPfam hit to PF00765, Autoinducer synthetase, score 5.8e-10
216591019032	1 probable transmembrane helix predicted for BCAM0239a by TMHMM2.0 at aa 122-144
216591019033	PS00949 Autoinducers synthetases family signature.
216591019034	Autoinducer binding domain; Region: Autoind_bind; pfam03472
216591019035	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591019036	DNA binding residues [nucleotide binding]
216591019037	dimerization interface [polypeptide binding]; other site
216591019038	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 3.9e-17
216591019039	Predicted helix-turn-helix motif with score 1269.000, SD 3.51 at aa 215-236, sequence KSSWAIASIVGISPHTVDYHIA
216591019040	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019041	HMMPfam hit to PF03472, Autoinducer binding domain, score 1.8e-10
216591019042	hypothetical protein; Validated; Region: PRK06840
216591019043	Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the...; Region: cond_enzymes; cl09938
216591019044	active site
216591019045	HMMPfam hit to PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 3.3e-07
216591019046	HMMPfam hit to PF08545, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 9.4e-06
216591019047	Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the...; Region: cond_enzymes; cl09938
216591019048	active site
216591019049	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
216591019050	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591019051	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591019052	HMMPfam hit to PF00278, Pyridoxal-dependent decarboxylase, C-, score 1.6e-27
216591019053	HMMPfam hit to PF02784, Pyridoxal-dependent decarboxylase, py, score 1e-38
216591019054	Transposase; Region: HTH_Tnp_1; pfam01527
216591019055	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591019056	HMMPfam hit to PF01527, Transposase, score 1.2e-10
216591019057	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591019058	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
216591019059	HMMPfam hit to PF05717, IS66 Orf2 like protein, score 3.2e-62
216591019060	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
216591019061	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
216591019062	putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; pfam13005
216591019063	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
216591019064	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
216591019065	HMMPfam hit to PF03050, Transposase IS66 family, score 1.1e-99
216591019066	acyl-CoA ligase (AMP-forming), exosortase A-associated; Region: ligase_PEP_1; TIGR03098
216591019067	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591019068	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591019069	acyl-activating enzyme (AAE) consensus motif; other site
216591019070	AMP binding site [chemical binding]; other site
216591019071	active site
216591019072	CoA binding site [chemical binding]; other site
216591019073	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.5e-114
216591019074	PS00455 Putative AMP-binding domain signature.
216591019075	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019076	3-oxoacyl-[acyl-carrier-protein]; Region: FabH; COG0332
216591019077	Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the...; Region: cond_enzymes; cl09938
216591019078	active site
216591019079	HMMPfam hit to PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 5.5e-07
216591019080	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019081	Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the...; Region: cond_enzymes; cl09938
216591019082	active site
216591019083	HMMPfam hit to PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)], score 0.0011
216591019084	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
216591019085	PS00012 Phosphopantetheine attachment site.
216591019086	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591019087	Acyl-CoA dehydrogenase; Region: ACAD; cd00567
216591019088	active site
216591019089	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 2.9e-18
216591019090	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 0.0042
216591019091	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 3.3e-22
216591019092	BCESM - Burkholderia cepacia epidemic strain marker
216591019093	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591019094	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591019095	DNA-binding site [nucleotide binding]; DNA binding site
216591019096	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
216591019097	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 5.6e-11
216591019098	HMMPfam hit to PF07729, FCD domain, score 8.3e-27
216591019099	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591019100	non-specific DNA binding site [nucleotide binding]; other site
216591019101	salt bridge; other site
216591019102	sequence-specific DNA binding site [nucleotide binding]; other site
216591019103	HMMPfam hit to PF01381, Helix-turn-helix, score 2e-10
216591019104	Predicted helix-turn-helix motif with score 1344.000, SD 3.76 at aa 26-47, sequence LTQVGLATRANVHPNTISLVER
216591019105	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591019106	non-specific DNA binding site [nucleotide binding]; other site
216591019107	salt bridge; other site
216591019108	sequence-specific DNA binding site [nucleotide binding]; other site
216591019109	HMMPfam hit to PF01381, Helix-turn-helix, score 2.6e-06
216591019110	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591019111	non-specific DNA binding site [nucleotide binding]; other site
216591019112	salt bridge; other site
216591019113	sequence-specific DNA binding site [nucleotide binding]; other site
216591019114	HMMPfam hit to PF01381, Helix-turn-helix, score 2.4e-08
216591019115	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591019116	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591019117	TM-ABC transporter signature motif; other site
216591019118	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 3.1e-29
216591019119	6 probable transmembrane helices predicted for BCAM0260 by TMHMM2.0 at aa 5-27, 57-76, 83-102, 132-154, 186-208 and 223-245
216591019120	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019121	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
216591019122	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591019123	TM-ABC transporter signature motif; other site
216591019124	7 probable transmembrane helices predicted for BCAM0261 by TMHMM2.0 at aa 26-48, 68-90, 100-122, 129-148, 180-202, 231-253 and 303-325
216591019125	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 4e-26
216591019126	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019127	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019128	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019129	urea ABC transporter, ATP-binding protein UrtD; Region: urea_trans_UrtD; TIGR03411
216591019130	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591019131	Walker A/P-loop; other site
216591019132	ATP binding site [chemical binding]; other site
216591019133	Q-loop/lid; other site
216591019134	ABC transporter signature motif; other site
216591019135	Walker B; other site
216591019136	D-loop; other site
216591019137	H-loop/switch region; other site
216591019138	HMMPfam hit to PF00005, ABC transporter score 5.2e-32
216591019139	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019140	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
216591019141	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591019142	Walker A/P-loop; other site
216591019143	ATP binding site [chemical binding]; other site
216591019144	Q-loop/lid; other site
216591019145	ABC transporter signature motif; other site
216591019146	Walker B; other site
216591019147	D-loop; other site
216591019148	H-loop/switch region; other site
216591019149	HMMPfam hit to PF00005, ABC transporter score 7.7e-47
216591019150	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019151	PS00211 ABC transporters family signature.
216591019152	Periplasmic binding protein; Region: Peripla_BP_6; pfam13458
216591019153	Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); Region: PBP1_AmiC_like; cd06331
216591019154	ligand binding site [chemical binding]; other site
216591019155	1 probable transmembrane helix predicted for BCAM0264 by TMHMM2.0 at aa 9-31
216591019156	putative amidase; Provisional; Region: PRK06169
216591019157	Amidase; Region: Amidase; pfam01425
216591019158	HMMPfam hit to PF01425, Amidase, score 6.4e-98
216591019159	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019160	PS00571 Amidases signature.
216591019161	Amino acid synthesis; Region: AA_synth; pfam06684
216591019162	HMMPfam hit to PF06684, Protein of unknown function (DUF1185), score 2.5e-25
216591019163	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591019164	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591019165	trimer interface [polypeptide binding]; other site
216591019166	eyelet of channel; other site
216591019167	HMMPfam hit to PF00267, Gram-negative porin, score 0.00058
216591019168	Protein of unknown function (DUF2384); Region: DUF2384; pfam09722
216591019169	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
216591019170	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
216591019171	active site
216591019172	Zn binding site [ion binding]; other site
216591019173	Zn binding site [ion binding]; other site
216591019174	Protein of unknown function (DUF1778); Region: DUF1778; pfam08681
216591019175	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591019176	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
216591019177	Coenzyme A binding pocket [chemical binding]; other site
216591019178	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.3e-12
216591019179	Probable gene remnant. CDS is truncated at the N-terminus in comparison to similar proteins, for example: similar to Escherichia coli hypothetical protein YhcG UniProt:YHCG_ECOLI (EMBL:U00096) (375 aa) fasta scores: E()=2.8e-65, 62.463% id in 341 aa
216591019180	HMMPfam hit to PF06250, Protein of unknown function (DUF1016), score 1.4e-136
216591019181	CDS contains a frameshift after codon 13. Similar to Burkholderia cenocepacia (strain HI2424) hypothetical protein UniProt:A0B4X6 (EMBL:CP000461 (142 aa) fasta scores: E()=3.2e-17, 48.120% id in 133 aa
216591019182	FRG domain; Region: FRG; pfam08867
216591019183	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591019184	Ligand Binding Site [chemical binding]; other site
216591019185	HMMPfam hit to PF00582, Universal stress protein family, score 2.5e-22
216591019186	Protein of unknown function (DUF1488); Region: DUF1488; pfam07369
216591019187	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
216591019188	Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and...; Region: ACD_LpsHSP_like; cd06471
216591019189	putative dimer interface [polypeptide binding]; other site
216591019190	HMMPfam hit to PF00011, Hsp20/alpha crystallin family, score 1.6e-23
216591019191	This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring. These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the tubulysin...; Region: mcbC-like_oxidoreductase; cd02142
216591019192	putative FMN binding site [chemical binding]; other site
216591019193	NADPH bind site [chemical binding]; other site
216591019194	Predicted periplasmic or secreted lipoprotein [General function prediction only]; Region: OsmY; COG2823
216591019195	BON domain; Region: BON; pfam04972
216591019196	BON domain; Region: BON; pfam04972
216591019197	BON domain; Region: BON; pfam04972
216591019198	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 1.3e-09
216591019199	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 7.8e-12
216591019200	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 0.00021
216591019201	Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659
216591019202	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
216591019203	Sulfate transporter family; Region: Sulfate_transp; pfam00916
216591019204	Sulfate transporter family; Region: Sulfate_transp; pfam00916
216591019205	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
216591019206	HMMPfam hit to PF01740, STAS domain, score 1.1e-14
216591019207	HMMPfam hit to PF00916, Sulfate transporter family, score 3.1e-52
216591019208	11 probable transmembrane helices predicted for BCAM0281 by TMHMM2.0 at aa 25-47, 51-73, 78-100, 110-132, 145-167, 182-204, 211-230, 250-272, 332-354, 359-381 and 388-410
216591019209	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019210	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019211	Predicted Rossmann fold nucleotide-binding protein [General function prediction only]; Region: COG1611
216591019212	HMMPfam hit to PF03641, Possible lysine decarboxylase, score 2.7e-48
216591019213	Cytochrome c; Region: Cytochrom_C; cl11414
216591019214	PS00190 Cytochrome c family heme-binding site signature.
216591019215	Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer,  utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are...; Region: Nitro_FMN_reductase; cl00514
216591019216	FMN binding site [chemical binding]; other site
216591019217	dimer interface [polypeptide binding]; other site
216591019218	Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer,  utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are...; Region: Nitro_FMN_reductase; cl00514
216591019219	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
216591019220	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD2; cd08298
216591019221	putative NAD(P) binding site [chemical binding]; other site
216591019222	putative substrate binding site [chemical binding]; other site
216591019223	catalytic Zn binding site [ion binding]; other site
216591019224	structural Zn binding site [ion binding]; other site
216591019225	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 5.1e-45
216591019226	fumarate/nitrate reduction transcriptional regulator; Provisional; Region: PRK11161
216591019227	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
216591019228	ligand binding site [chemical binding]; other site
216591019229	flexible hinge region; other site
216591019230	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
216591019231	putative switch regulator; other site
216591019232	non-specific DNA interactions [nucleotide binding]; other site
216591019233	DNA binding site [nucleotide binding]
216591019234	sequence specific DNA binding site [nucleotide binding]; other site
216591019235	putative cAMP binding site [chemical binding]; other site
216591019236	HMMPfam hit to PF00325, Bacterial regulatory proteins, crp famil, score 1.3e-11
216591019237	Predicted helix-turn-helix motif with score 1607.000, SD 4.66 at aa 210-231, sequence MTRDEIGEYLGMKLETVSRMLS
216591019238	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 1.7e-17
216591019239	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591019240	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591019241	active site
216591019242	phosphorylation site [posttranslational modification]
216591019243	intermolecular recognition site; other site
216591019244	dimerization interface [polypeptide binding]; other site
216591019245	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591019246	DNA binding residues [nucleotide binding]
216591019247	dimerization interface [polypeptide binding]; other site
216591019248	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 9.8e-17
216591019249	Predicted helix-turn-helix motif with score 1738.000, SD 5.11 at aa 164-185, sequence ESISEIAQALCVSVKTVSTYKT
216591019250	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.1e-34
216591019251	CHASE domain; Region: CHASE; cl01369
216591019252	CHASE domain; Region: CHASE; cl01369
216591019253	PAS domain S-box; Region: sensory_box; TIGR00229
216591019254	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591019255	putative active site [active]
216591019256	heme pocket [chemical binding]; other site
216591019257	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG4585
216591019258	Histidine kinase; Region: HisKA_3; pfam07730
216591019259	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591019260	ATP binding site [chemical binding]; other site
216591019261	Mg2+ binding site [ion binding]; other site
216591019262	G-X-G motif; other site
216591019263	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 5.7e-20
216591019264	HMMPfam hit to PF07730, Histidine kinase, score 1.1e-16
216591019265	HMMPfam hit to PF08448, PAS fold, score 5.6e-11
216591019266	HMMPfam hit to PF00989, PAS fold, score 5e-13
216591019267	1 probable transmembrane helix predicted for BCAM0289 by TMHMM2.0 at aa 21-43
216591019268	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591019269	Ligand Binding Site [chemical binding]; other site
216591019270	HMMPfam hit to PF00582, Universal stress protein family, score 1.5e-19
216591019271	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591019272	Ligand Binding Site [chemical binding]; other site
216591019273	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591019274	Ligand Binding Site [chemical binding]; other site
216591019275	HMMPfam hit to PF00582, Universal stress protein family, score 6.5e-14
216591019276	PS00616 Histidine acid phosphatases phosphohistidine signature.
216591019277	HMMPfam hit to PF00582, Universal stress protein family, score 3.9e-09
216591019278	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591019279	Ligand Binding Site [chemical binding]; other site
216591019280	HMMPfam hit to PF00582, Universal stress protein family, score 1.9e-28
216591019281	Acetate kinase [Energy production and conversion]; Region: ackA; COG0282
216591019282	HMMPfam hit to PF00871, Acetokinase family, score 3.3e-101
216591019283	PS01075 Acetate and butyrate kinases family signature 1.
216591019284	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591019285	Ligand Binding Site [chemical binding]; other site
216591019286	HMMPfam hit to PF00582, Universal stress protein family, score 1.6e-13
216591019287	HMMPfam hit to PF00582, Universal stress protein family, score 3.7e-08
216591019288	acetoacetyl-CoA reductase; Region: AcAcCoA_reduct; TIGR01829
216591019289	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
216591019290	NAD(P) binding site [chemical binding]; other site
216591019291	homotetramer interface [polypeptide binding]; other site
216591019292	homodimer interface [polypeptide binding]; other site
216591019293	active site
216591019294	HMMPfam hit to PF00106, short chain dehydrogenase, score 3e-37
216591019295	PS00061 Short-chain dehydrogenases/reductases family signature.
216591019296	Poly-beta-hydroxybutyrate polymerase N terminal; Region: PHBC_N; pfam12551
216591019297	Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; Region: PhaC_N; pfam07167
216591019298	Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]; Region: PhaC; COG3243
216591019299	HMMPfam hit to PF07167, Poly-beta-hydroxybutyrate polymerase (P, score 5.7e-58
216591019300	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 0.00051
216591019301	Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl17212
216591019302	HMMPfam hit to PF01515, Phosphate acetyl/butaryl transferase, score 4.7e-23
216591019303	formaldehyde dehydrogenase (FDH)-like; Region: FDH_like_ADH2; cd08286
216591019304	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
216591019305	catalytic Zn binding site [ion binding]; other site
216591019306	structural Zn binding site [ion binding]; other site
216591019307	NAD(P) binding site [chemical binding]; other site
216591019308	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 2.8e-46
216591019309	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591019310	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 8e-32
216591019311	Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]; Region: YSH1; COG1236
216591019312	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
216591019313	Beta-Casp domain; Region: Beta-Casp; smart01027
216591019314	RNA-metabolising metallo-beta-lactamase; Region: RMMBL; pfam07521
216591019315	HMMPfam hit to PF07521, RNA-metabolising metallo-beta-lactamase, score 1.4e-08
216591019316	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 3.2e-21
216591019317	Protein of unknown function (DUF2964); Region: DUF2964; pfam11177
216591019318	2 probable transmembrane helices predicted for BCAM0301 by TMHMM2.0 at aa 9-31 and 35-54
216591019319	YhgE/Pip N-terminal domain; Region: pip_yhgE_Nterm; TIGR03061
216591019320	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
216591019321	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
216591019322	5 probable transmembrane helices predicted for BCAM0302 by TMHMM2.0 at aa 23-40, 226-248, 258-280, 287-306 and 344-366
216591019323	HMMPfam hit to PF01061, ABC-2 type transporter score 3.4e-28
216591019324	PS00890 ABC-2 type transport system integral membrane proteins signature.
216591019325	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
216591019326	ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]; Region: COG1123
216591019327	Walker A/P-loop; other site
216591019328	ATP binding site [chemical binding]; other site
216591019329	Q-loop/lid; other site
216591019330	ABC transporter signature motif; other site
216591019331	Walker B; other site
216591019332	D-loop; other site
216591019333	H-loop/switch region; other site
216591019334	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
216591019335	Walker A/P-loop; other site
216591019336	ATP binding site [chemical binding]; other site
216591019337	Q-loop/lid; other site
216591019338	ABC transporter signature motif; other site
216591019339	Walker B; other site
216591019340	D-loop; other site
216591019341	H-loop/switch region; other site
216591019342	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
216591019343	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
216591019344	5 probable transmembrane helices predicted for BCAM0303 by TMHMM2.0 at aa 740-762, 783-805, 820-842, 847-869 and 910-929
216591019345	HMMPfam hit to PF01061, ABC-2 type transporter score 7.4e-10
216591019346	HMMPfam hit to PF00005, ABC transporter score 4.6e-53
216591019347	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019348	HMMPfam hit to PF00005, ABC transporter score 6.1e-44
216591019349	PS00211 ABC transporters family signature.
216591019350	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019351	putative efflux pump membrane fusion protein; Provisional; Region: PRK03598
216591019352	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591019353	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591019354	HMMPfam hit to PF00529, HlyD family secretion protein, score 3.1e-24
216591019355	1 probable transmembrane helix predicted for BCAM0304 by TMHMM2.0 at aa 7-29
216591019356	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
216591019357	HMMPfam hit to PF02321, Outer membrane efflux protein, score 2.2e-38
216591019358	HMMPfam hit to PF02321, Outer membrane efflux protein, score 7e-32
216591019359	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019360	Protein of unknown function (DUF2964); Region: DUF2964; pfam11177
216591019361	2 probable transmembrane helices predicted for BCAM0306 by TMHMM2.0 at aa 9-31 and 35-57
216591019362	Predicted periplasmic or secreted lipoprotein [General function prediction only]; Region: OsmY; COG2823
216591019363	BON domain; Region: BON; pfam04972
216591019364	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 5.1e-10
216591019365	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 2.6e-12
216591019366	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 2.7e-09
216591019367	ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241
216591019368	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591019369	Walker A motif; other site
216591019370	ATP binding site [chemical binding]; other site
216591019371	Walker B motif; other site
216591019372	arginine finger; other site
216591019373	Peptidase family M41; Region: Peptidase_M41; pfam01434
216591019374	3 probable transmembrane helices predicted for BCAM0309 by TMHMM2.0 at aa 7-26, 116-138 and 226-248
216591019375	HMMPfam hit to PF06480, FtsH Extracellular, score 4.1e-25
216591019376	HMMPfam hit to PF00004, ATPase family associated with various c, score 1.9e-93
216591019377	HMMPfam hit to PF07728, ATPase family associated with various c, score 8.8e-05
216591019378	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019379	PS00674 AAA-protein family signature.
216591019380	PS01034 Glycosyl hydrolases family 16 active sites.
216591019381	HMMPfam hit to PF01434, Peptidase family M41, score 5.4e-96
216591019382	ribonucleotide reductase-like protein; Provisional; Region: PRK06948
216591019383	Ribonucleotide reductase, all-alpha domain; Region: Ribonuc_red_lgN; pfam00317
216591019384	Class II ribonucleotide reductase, dimeric form; Region: RNR_II_dimer; cd02888
216591019385	active site
216591019386	dimer interface [polypeptide binding]; other site
216591019387	effector binding site; other site
216591019388	HMMPfam hit to PF02867, Ribonucleotide reductase, barrel doma, score 5.3e-14
216591019389	PS00237 G-protein coupled receptors signature.
216591019390	Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]; Region: FruK; COG1105
216591019391	1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose...; Region: FruK_PfkB_like; cd01164
216591019392	putative substrate binding site [chemical binding]; other site
216591019393	putative ATP binding site [chemical binding]; other site
216591019394	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 6.8e-50
216591019395	PS00583 pfkB family of carbohydrate kinases signature 1.
216591019396	PS00584 pfkB family of carbohydrate kinases signature 2.
216591019397	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019398	Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands; Region: CE4_NodB_like_5s_6s; cd10918
216591019399	putative active site [active]
216591019400	putative metal binding site [ion binding]; other site
216591019401	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 1.8e-23
216591019402	Carboxypeptidase regulatory-like domain; Region: CarboxypepD_reg; pfam13620
216591019403	Putative glycosyl hydrolase domain; Region: DUF4015; pfam13200
216591019404	Lecithin retinol acyltransferase; Region: LRAT; pfam04970
216591019405	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019406	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591019407	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
216591019408	5 probable transmembrane helices predicted for BCAM0317 by TMHMM2.0 at aa 5-27, 40-62, 91-113, 123-145 and 158-180
216591019409	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; Region: ATPase-IB2_Cd; TIGR01512
216591019410	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
216591019411	Hemerythrin HHE cation binding domain; Region: Hemerythrin; pfam01814
216591019412	6 probable transmembrane helices predicted for BCAM0318 by TMHMM2.0 at aa 22-44, 51-73, 83-105, 245-263, 273-295 and 575-597
216591019413	HMMPfam hit to PF00122, E1-E2 ATPase, score 1e-39
216591019414	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 6.7e-27
216591019415	PS00154 E1-E2 ATPases phosphorylation site.
216591019416	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.0059
216591019417	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.00046
216591019418	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591019419	Ligand Binding Site [chemical binding]; other site
216591019420	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591019421	Ligand Binding Site [chemical binding]; other site
216591019422	HMMPfam hit to PF00582, Universal stress protein family, score 1.9e-13
216591019423	HMMPfam hit to PF00582, Universal stress protein family, score 2.5e-16
216591019424	Cytochrome B561 [Energy production and conversion]; Region: CybB; COG3038
216591019425	HMMPfam hit to PF01292, Cytochrome b561 family, score 5.9e-28
216591019426	4 probable transmembrane helices predicted for BCAM0320 by TMHMM2.0 at aa 2-21, 26-45, 73-90 and 127-149
216591019427	Cytochrome b562; Region: Cytochrom_B562; pfam07361
216591019428	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591019429	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591019430	active site
216591019431	phosphorylation site [posttranslational modification]
216591019432	intermolecular recognition site; other site
216591019433	dimerization interface [polypeptide binding]; other site
216591019434	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591019435	DNA binding site [nucleotide binding]
216591019436	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.5e-33
216591019437	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1e-19
216591019438	sensor protein QseC; Provisional; Region: PRK10337
216591019439	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591019440	ATP binding site [chemical binding]; other site
216591019441	Mg2+ binding site [ion binding]; other site
216591019442	G-X-G motif; other site
216591019443	HMMPfam hit to PF00672, HAMP domain, score 2.5e-07
216591019444	1 probable transmembrane helix predicted for BCAM0323 by TMHMM2.0 at aa 162-184
216591019445	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 4.5e-13
216591019446	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.7e-33
216591019447	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591019448	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591019449	catalytic residue [active]
216591019450	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 2.3e-16
216591019451	3 probable transmembrane helices predicted for BCAM0325 by TMHMM2.0 at aa 21-43, 58-80 and 93-115
216591019452	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019453	Type IV secretory pathway, VirB3-like protein; Region: VirB3; cl01501
216591019454	HMMPfam hit to PF05101, Type IV secretory pathway, VirB3-like protei, score 5.6e-19
216591019455	2 probable transmembrane helices predicted for BCAM0326 by TMHMM2.0 at aa 21-40 and 44-66
216591019456	type IV secretion/conjugal transfer ATPase, VirB4 family; Region: VirB4_CagE; TIGR00929
216591019457	CagE, TrbE, VirB family, component of type IV transporter system; Region: CagE_TrbE_VirB; pfam03135
216591019458	HMMPfam hit to PF03135, CagE, TrbE, VirB family, component of, score 5.9e-55
216591019459	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019460	TrbL/VirB6 plasmid conjugal transfer protein; Region: TrbL; pfam04610
216591019461	7 probable transmembrane helices predicted for BCAM0328 by TMHMM2.0 at aa 26-48, 61-83, 167-189, 196-218, 228-250, 280-302 and 306-328
216591019462	HMMPfam hit to PF04610, TrbL/VirB6 plasmid conjugal transfer protein, score 2e-21
216591019463	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019464	Type IV secretion system proteins; Region: T4SS; pfam07996
216591019465	P-type DNA transfer protein VirB5; Region: VirB5; TIGR02791
216591019466	HMMPfam hit to PF07996, Type IV secretion system proteins, score 2.1e-50
216591019467	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019468	VirB8 protein; Region: VirB8; pfam04335
216591019469	1 probable transmembrane helix predicted for BCAM0331 by TMHMM2.0 at aa 31-53
216591019470	HMMPfam hit to PF04335, VirB8 protein, score 7.8e-30
216591019471	VirB9/CagX/TrbG, a component of the type IV secretion system; Region: VirB9_CagX_TrbG; cl11423
216591019472	VirB9/CagX/TrbG, a component of the type IV secretion system; Region: VirB9_CagX_TrbG; cd06911
216591019473	VirB7 interaction site; other site
216591019474	HMMPfam hit to PF03524, Conjugal transfer protein, score 2e-57
216591019475	Bacterial conjugation TrbI-like protein; Region: TrbI; pfam03743
216591019476	1 probable transmembrane helix predicted for BCAM0333 by TMHMM2.0 at aa 50-72
216591019477	HMMPfam hit to PF03743, Bacterial conjugation TrbI-like protein, score 2.9e-65
216591019478	PS00307 Legume lectins beta-chain signature.
216591019479	P-type DNA transfer ATPase VirB11; Region: VirB11; TIGR02788
216591019480	Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to...; Region: VirB11-like_ATPase; cd01130
216591019481	Walker A motif; other site
216591019482	hexamer interface [polypeptide binding]; other site
216591019483	ATP binding site [chemical binding]; other site
216591019484	Walker B motif; other site
216591019485	HMMPfam hit to PF00437, Type II/IV secretion system protein, score 1.4e-62
216591019486	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019487	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591019488	Similar to Xanthomonas axonopodis (pv. citri) VirD4 protein UniProt:Q8PJB2 (557 aa) fasta scores: E()=1.6e-91, 45.611% id in 581 aa; homology does not extend to C terminus; frameshift after codon 114; Possibly not pseudogene, but begins at codon 115. However, this would seem to be missing full N-terminus, so more likely to be a pseudogene
216591019489	HMMPfam hit to PF02534, TraG/TraD family, score 1.6e-110
216591019490	Primase C terminal 2 (PriCT-2); Region: PriCT_2; pfam08707
216591019491	Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from...; Region: TOPRIM; cl00718
216591019492	active site
216591019493	metal binding site [ion binding]; metal-binding site
216591019494	type IV secretion system T-DNA border endonuclease VirD2; Provisional; Region: PRK13863
216591019495	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
216591019496	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591019497	HMMPfam hit to PF02525, Flavodoxin-like fold, score 2.2e-31
216591019498	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591019499	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591019500	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_6; cd08475
216591019501	putative effector binding pocket; other site
216591019502	putative dimerization interface [polypeptide binding]; other site
216591019503	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.9e-17
216591019504	Predicted helix-turn-helix motif with score 1497.000, SD 4.29 at aa 18-39, sequence SSFAQAAEKLHITRSAVGKSIA
216591019505	PS00044 Bacterial regulatory proteins, lysR family signature.
216591019506	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.7e-45
216591019507	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
216591019508	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591019509	catalytic residues [active]
216591019510	HMMPfam hit to PF08534, Redoxin, score 7.8e-10
216591019511	PS00194 Thioredoxin family active site.
216591019512	4 probable transmembrane helices predicted for BCAM0343 by TMHMM2.0 at aa 6-28, 41-63, 73-95 and 108-130
216591019513	Antitoxin Phd_YefM, type II toxin-antitoxin system; Region: PhdYeFM_antitox; pfam02604
216591019514	PIN domain of ribonucleases (toxins), VapC and FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus horikoshii protein PH0500, and other similar bacterial and archaeal homologs; Region: PIN_VapC-FitB; cd09881
216591019515	oligomeric interface; other site
216591019516	putative active site [active]
216591019517	homodimer interface [polypeptide binding]; other site
216591019518	HMMPfam hit to PF01850, PIN domain, score 6.7e-16
216591019519	SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: SmtA; COG0500
216591019520	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591019521	S-adenosylmethionine binding site [chemical binding]; other site
216591019522	HMMPfam hit to PF08241, Methyltransferase domain, score 4.4e-32
216591019523	HMMPfam hit to PF08242, Methyltransferase domain, score 9.5e-21
216591019524	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591019525	non-specific DNA binding site [nucleotide binding]; other site
216591019526	salt bridge; other site
216591019527	sequence-specific DNA binding site [nucleotide binding]; other site
216591019528	Predicted helix-turn-helix motif with score 1028.000, SD 2.69 at aa 20-41, sequence MNQTEFAAAGGVQQHAQVNYEK
216591019529	Contains frameshift mutations after codons 15, 74 and 126
216591019530	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 8.1e-07
216591019531	ABC transporter, permease/ATP-binding protein; Region: MsbA_rel; TIGR02204
216591019532	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591019533	Walker A/P-loop; other site
216591019534	ATP binding site [chemical binding]; other site
216591019535	Q-loop/lid; other site
216591019536	ABC transporter signature motif; other site
216591019537	Walker B; other site
216591019538	D-loop; other site
216591019539	H-loop/switch region; other site
216591019540	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 5.7e-06
216591019541	5 probable transmembrane helices predicted for BCAM0355 by TMHMM2.0 at aa 40-62, 72-94, 149-171, 181-200 and 263-285
216591019542	PS00037 Myb DNA-binding domain repeat signature 1.
216591019543	HMMPfam hit to PF00005, ABC transporter score 1.2e-52
216591019544	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019545	PS00211 ABC transporters family signature.
216591019546	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591019547	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591019548	active site
216591019549	catalytic tetrad [active]
216591019550	HMMPfam hit to PF00248, Aldo/keto reductase family, score 1.5e-68
216591019551	PS00062 Aldo/keto reductase family signature 2.
216591019552	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591019553	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591019554	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591019555	putative effector binding pocket; other site
216591019556	dimerization interface [polypeptide binding]; other site
216591019557	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.3e-16
216591019558	Predicted helix-turn-helix motif with score 1336.000, SD 3.74 at aa 16-37, sequence GGLAAAGREVGLSPATVSERLT
216591019559	PS00044 Bacterial regulatory proteins, lysR family signature.
216591019560	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.2e-45
216591019561	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591019562	dimerization interface [polypeptide binding]; other site
216591019563	putative DNA binding site [nucleotide binding]; other site
216591019564	putative Zn2+ binding site [ion binding]; other site
216591019565	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591019566	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591019567	catalytic residue [active]
216591019568	HMMPfam hit to PF00282, Pyridoxal-dependent decarboxylase conse, score 1.4e-14
216591019569	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019570	PS00107 Protein kinases ATP-binding region signature.
216591019571	PS00018 EF-hand calcium-binding domain.
216591019572	putative DNA-binding transcriptional regulator; Provisional; Region: PRK09791
216591019573	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591019574	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591019575	dimerization interface [polypeptide binding]; other site
216591019576	HMMPfam hit to PF03466, LysR substrate binding domain, score 4e-34
216591019577	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.4e-21
216591019578	PS00044 Bacterial regulatory proteins, lysR family signature.
216591019579	Predicted helix-turn-helix motif with score 1718.000, SD 5.04 at aa 16-37, sequence RTIRGAARALGVTQPAVSGIVR
216591019580	allantoate amidohydrolase; Reviewed; Region: PRK12892
216591019581	M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884
216591019582	active site
216591019583	metal binding site [ion binding]; metal-binding site
216591019584	dimer interface [polypeptide binding]; other site
216591019585	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 2.4e-36
216591019586	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 0.0022
216591019587	Cupin domain; Region: Cupin_2; cl17218
216591019588	HMMPfam hit to PF00190, Cupin, score 0.0019
216591019589	HMMPfam hit to PF07883, Cupin domain, score 2.5e-19
216591019590	Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]; Region: COG3537
216591019591	Glycosyl hydrolase family 92; Region: Glyco_hydro_92; pfam07971
216591019592	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019593	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019594	HMMPfam hit to PF07971, Glycosyl hydrolase family, score 6.2e-153
216591019595	Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]; Region: COG3537
216591019596	Glycosyl hydrolase family 92; Region: Glyco_hydro_92; pfam07971
216591019597	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019598	HMMPfam hit to PF07971, Glycosyl hydrolase family, score 6.3e-161
216591019599	3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK07231
216591019600	classical (c) SDRs; Region: SDR_c; cd05233
216591019601	NAD(P) binding site [chemical binding]; other site
216591019602	active site
216591019603	HMMPfam hit to PF00106, short chain dehydrogenase, score 3e-16
216591019604	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 2.6e-05
216591019605	5'(3')-nucleotidase/polyphosphatase; Provisional; Region: surE; PRK00346
216591019606	HMMPfam hit to PF01975, Survival protein SurE, score 1e-66
216591019607	Predicted membrane protein [Function unknown]; Region: COG4541
216591019608	3 probable transmembrane helices predicted for BCAM0367 by TMHMM2.0 at aa 10-32, 41-63 and 78-100
216591019609	HMMPfam hit to PF05437, Branched-chain amino acid transport protein, score 2.2e-25
216591019610	Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]; Region: AzlC; COG1296
216591019611	5 probable transmembrane helices predicted for BCAM0368 by TMHMM2.0 at aa 24-46, 70-92, 146-168, 178-196 and 217-239
216591019612	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019613	HMMPfam hit to PF03591, AzlC protein, score 6.2e-53
216591019614	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591019615	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591019616	putative DNA binding site [nucleotide binding]; other site
216591019617	putative Zn2+ binding site [ion binding]; other site
216591019618	AsnC family; Region: AsnC_trans_reg; pfam01037
216591019619	HMMPfam hit to PF01037, AsnC family, score 2.1e-27
216591019620	1 probable transmembrane helix predicted for BCAM0370 by TMHMM2.0 at aa 13-35
216591019621	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019622	hypothetical protein; Provisional; Region: PRK11470
216591019623	HMMPfam hit to PF06520, Protein of unknown function (DUF1105), score 5e-46
216591019624	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591019625	HMMPfam hit to PF01810, LysE type translocator, score 6.9e-32
216591019626	5 probable transmembrane helices predicted for BCAM0372 by TMHMM2.0 at aa 7-29, 39-58, 65-87, 146-168 and 188-207
216591019627	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019628	PASTA domain. This domain is found at the C-termini of several Penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. It is a small globular fold consisting of 3 beta-sheets and an alpha-helix. The name PASTA is derived from PBP and...; Region: PASTA; cl02768
216591019629	Uncharacterized protein conserved in bacteria (DUF2322); Region: DUF2322; pfam10084
216591019630	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591019631	putative substrate translocation pore; other site
216591019632	14 probable transmembrane helices predicted for BCAM0375 by TMHMM2.0 at aa 23-45, 60-82, 89-111, 115-137, 150-172, 177-199, 212-229, 239-256, 280-302, 312-334, 341-363, 378-400, 413-432 and 442-461
216591019633	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.2e-48
216591019634	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019635	Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]; Region: COG1853
216591019636	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
216591019637	catalytic residues [active]
216591019638	Uncharacterized protein family UPF0047; Region: UPF0047; pfam01894
216591019639	HMMPfam hit to PF01894, Uncharacterised protein family UPF0047, score 3.6e-54
216591019640	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591019641	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591019642	dimer interface [polypeptide binding]; other site
216591019643	phosphorylation site [posttranslational modification]
216591019644	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591019645	ATP binding site [chemical binding]; other site
216591019646	Mg2+ binding site [ion binding]; other site
216591019647	G-X-G motif; other site
216591019648	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591019649	Response regulator receiver domain; Region: Response_reg; pfam00072
216591019650	active site
216591019651	phosphorylation site [posttranslational modification]
216591019652	intermolecular recognition site; other site
216591019653	dimerization interface [polypeptide binding]; other site
216591019654	HMMPfam hit to PF00072, Response regulator receiver domain, score 1e-16
216591019655	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 1.1e-34
216591019656	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.3e-12
216591019657	2 probable transmembrane helices predicted for BCAM0379 by TMHMM2.0 at aa 13-35 and 182-204
216591019658	Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199
216591019659	HMMPfam hit to PF00174, Oxidoreductase molybdopterin binding d, score 6.5e-07
216591019660	PS00430 TonB-dependent receptor proteins signature 1.
216591019661	1 probable transmembrane helix predicted for BCAM0380 by TMHMM2.0 at aa 7-29
216591019662	BetR domain; Region: BetR; pfam08667
216591019663	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
216591019664	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591019665	active site
216591019666	phosphorylation site [posttranslational modification]
216591019667	intermolecular recognition site; other site
216591019668	HMMPfam hit to PF00072, Response regulator receiver domain, score 0.00089
216591019669	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591019670	Sel1-like repeats; Region: SEL1; smart00671
216591019671	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019672	HMMPfam hit to PF08238, Sel1 repeat, score 1.1e-09
216591019673	HMMPfam hit to PF08238, Sel1 repeat, score 0.018
216591019674	Protein of unknown function (DUF3897); Region: DUF3897; cl17494
216591019675	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019676	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019677	1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]; Region: Acd; COG2515
216591019678	Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia; Region: ACCD; cd06449
216591019679	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591019680	catalytic residue [active]
216591019681	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 2.1e-06
216591019682	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591019683	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
216591019684	putative DNA binding site [nucleotide binding]; other site
216591019685	putative Zn2+ binding site [ion binding]; other site
216591019686	AsnC family; Region: AsnC_trans_reg; pfam01037
216591019687	HMMPfam hit to PF01037, AsnC family, score 1.8e-22
216591019688	PS00190 Cytochrome c family heme-binding site signature.
216591019689	pyruvate dehydrogenase; Provisional; Region: PRK09124
216591019690	Pyrimidine (PYR) binding domain of POX; Region: TPP_PYR_POX; cd07039
216591019691	PYR/PP interface [polypeptide binding]; other site
216591019692	tetramer interface [polypeptide binding]; other site
216591019693	dimer interface [polypeptide binding]; other site
216591019694	TPP binding site [chemical binding]; other site
216591019695	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591019696	Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates...; Region: TPP_POX; cd02014
216591019697	TPP-binding site [chemical binding]; other site
216591019698	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 2.3e-61
216591019699	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591019700	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 1.7e-22
216591019701	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 2.6e-50
216591019702	PS00187 Thiamine pyrophosphate enzymes signature.
216591019703	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591019704	HMMPfam hit to PF08241, Methyltransferase domain, score 3e-08
216591019705	HMMPfam hit to PF08242, Methyltransferase domain, score 2e-07
216591019706	Alkaline phosphatase [Inorganic ion transport and metabolism]; Region: PhoA; COG1785
216591019707	Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH; Region: alkPPc; cd00016
216591019708	active site
216591019709	dimer interface [polypeptide binding]; other site
216591019710	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019711	HMMPfam hit to PF00245, Alkaline phosphatase, score 4.6e-68
216591019712	Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH; Region: alkPPc; cd00016
216591019713	Alkaline phosphatase homologues; Region: alkPPc; smart00098
216591019714	active site
216591019715	dimer interface [polypeptide binding]; other site
216591019716	1 probable transmembrane helix predicted for BCAM0390 by TMHMM2.0 at aa 7-24
216591019717	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019718	HMMPfam hit to PF00245, Alkaline phosphatase, score 3.5e-59
216591019719	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591019720	HMMPfam hit to PF01757, Acyltransferase family, score 2.3e-24
216591019721	10 probable transmembrane helices predicted for BCAM0392 by TMHMM2.0 at aa 12-31, 46-68, 95-117, 137-159, 184-202, 207-229, 238-260, 265-284, 304-323 and 333-355
216591019722	Beta-lactamase class D [Defense mechanisms]; Region: COG2602
216591019723	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 4.1e-51
216591019724	PS00017 ATP/GTP-binding site motif A (P-loop).
216591019725	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591019726	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591019727	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591019728	dimerization interface [polypeptide binding]; other site
216591019729	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-21
216591019730	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.3e-21
216591019731	PS00044 Bacterial regulatory proteins, lysR family signature.
216591019732	Predicted helix-turn-helix motif with score 1625.000, SD 4.72 at aa 19-40, sequence GNMTRAAEAVNRSQSAVSMQIK
216591019733	Protein of unknown function (DUF3422); Region: DUF3422; pfam11902
216591019734	DNA-binding transcriptional regulator CynR; Provisional; Region: PRK11242
216591019735	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591019736	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591019737	dimerization interface [polypeptide binding]; other site
216591019738	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.1e-48
216591019739	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-25
216591019740	PS00044 Bacterial regulatory proteins, lysR family signature.
216591019741	Predicted helix-turn-helix motif with score 1958.000, SD 5.86 at aa 16-37, sequence RSFTRAAAALHVSQPALSQQIR
216591019742	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeB; cd00884
216591019743	active site clefts [active]
216591019744	zinc binding site [ion binding]; other site
216591019745	dimer interface [polypeptide binding]; other site
216591019746	HMMPfam hit to PF00484, Carbonic anhydrase, score 5.9e-86
216591019747	PS00704 Prokaryotic-type carbonic anhydrases signature 1.
216591019748	PS00705 Prokaryotic-type carbonic anhydrases signature 2.
216591019749	cyanate hydratase; Validated; Region: PRK02866
216591019750	Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate.  It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the...; Region: Cyanase_C; cd00559
216591019751	oligomer interface [polypeptide binding]; other site
216591019752	active site
216591019753	HMMPfam hit to PF02560, Cyanate lyase C-terminal domain, score 9.2e-54
216591019754	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
216591019755	nucleoside/Zn binding site; other site
216591019756	dimer interface [polypeptide binding]; other site
216591019757	catalytic motif [active]
216591019758	HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 2.1e-20
216591019759	PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.
216591019760	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.1e-10
216591019761	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591019762	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591019763	TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440
216591019764	putative dimerization interface [polypeptide binding]; other site
216591019765	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.7e-47
216591019766	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.7e-17
216591019767	PS00044 Bacterial regulatory proteins, lysR family signature.
216591019768	Predicted helix-turn-helix motif with score 1631.000, SD 4.74 at aa 18-39, sequence GSFRQAADTLHVTQTAITQRLR
216591019769	Trans-aconitate methyltransferase [General function prediction only]; Region: Tam; COG4106
216591019770	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591019771	S-adenosylmethionine binding site [chemical binding]; other site
216591019772	HMMPfam hit to PF08241, Methyltransferase domain, score 5.3e-18
216591019773	HMMPfam hit to PF08242, Methyltransferase domain, score 4.9e-19
216591019774	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
216591019775	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591019776	Coenzyme A binding pocket [chemical binding]; other site
216591019777	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 9.9e-21
216591019778	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591019779	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591019780	trimer interface [polypeptide binding]; other site
216591019781	eyelet of channel; other site
216591019782	HMMPfam hit to PF00267, Gram-negative porin, score 1.8e-07
216591019783	PS00572 Glycosyl hydrolases family 1 active site.
216591019784	phospholipase C, phosphocholine-specific, Pseudomonas-type; Region: PC_PLC; TIGR03396
216591019785	Phosphoesterase family; Region: Phosphoesterase; pfam04185
216591019786	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591019787	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591019788	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 1.6e-12
216591019789	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 1.2e-16
216591019790	HMMPfam hit to PF04185, Phosphoesterase family, score 2.7e-130
216591019791	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019792	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
216591019793	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591019794	motif II; other site
216591019795	choline ABC transporter, periplasmic binding protein; Region: ABC_choline_bnd; TIGR03414
216591019796	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; COG2113
216591019797	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 2.3e-63
216591019798	MgtC family; Region: MgtC; pfam02308
216591019799	HMMPfam hit to PF02308, MgtC family, score 1.7e-51
216591019800	3 probable transmembrane helices predicted for BCAM0411 by TMHMM2.0 at aa 34-56, 71-89 and 102-133
216591019801	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
216591019802	helix_turn_helix, Deoxyribose operon repressor; Region: HTH_DEOR; smart00420
216591019803	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
216591019804	HMMPfam hit to PF08220, DeoR-like helix-turn-helix domain, score 4.3e-13
216591019805	HMMPfam hit to PF08279, HTH domain, score 4.4e-05
216591019806	PS00894 Bacterial regulatory proteins, deoR family signature.
216591019807	Predicted helix-turn-helix motif with score 1095.000, SD 2.92 at aa 20-41, sequence VSTDRIMAELNVSRETVRRDLV
216591019808	HMMPfam hit to PF00455, Bacterial regulatory proteins, deoR family, score 9.1e-32
216591019809	N-terminal domain of molybdenum-binding protein [General function prediction only]; Region: ModE; COG2005
216591019810	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix protei, score 5.7e-14
216591019811	Uncharacterized protein conserved in bacteria (DUF2325); Region: DUF2325; pfam10087
216591019812	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591019813	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591019814	Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like; Region: ALDH_F10_BADH; cd07110
216591019815	NAD(P) binding site [chemical binding]; other site
216591019816	catalytic residues [active]
216591019817	catalytic residues [active]
216591019818	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 2.4e-176
216591019819	PS00070 Aldehyde dehydrogenases cysteine active site.
216591019820	Agmatinase-like family includes proclavaminic acid amidinohydrolase; Region: Agmatinase_PAH; cd11592
216591019821	agmatinase; Region: agmatinase; TIGR01230
216591019822	oligomer interface [polypeptide binding]; other site
216591019823	putative active site [active]
216591019824	Mn binding site [ion binding]; other site
216591019825	HMMPfam hit to PF00491, Arginase family, score 1.5e-67
216591019826	PS01053 Arginase family signature 3.
216591019827	PS00148 Arginase family signature 2.
216591019828	PS00147 Arginase family signature 1.
216591019829	helix_turn_helix, Lux Regulon; Region: HTH_LUXR; smart00421
216591019830	DNA binding residues [nucleotide binding]
216591019831	dimerization interface [polypeptide binding]; other site
216591019832	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 0.00016
216591019833	Protein of unknown function (DUF861); Region: Cupin_3; cl17594
216591019834	HMMPfam hit to PF05899, Protein of unknown function (DUF861), score 1.3e-05
216591019835	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591019836	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591019837	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 4.3e-60
216591019838	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591019839	12 probable transmembrane helices predicted for BCAM0420 by TMHMM2.0 at aa 16-38, 53-75, 82-104, 109-131, 138-160, 165-187, 210-232, 247-269, 276-293, 297-319, 332-354 and 358-380
216591019840	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019841	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019842	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591019843	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591019844	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591019845	dimerization interface [polypeptide binding]; other site
216591019846	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.5e-13
216591019847	Predicted helix-turn-helix motif with score 1076.000, SD 2.85 at aa 23-44, sequence RGITAAEASLGVRQSTISTQLS
216591019848	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.6e-27
216591019849	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591019850	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591019851	DNA binding residues [nucleotide binding]
216591019852	dimerization interface [polypeptide binding]; other site
216591019853	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 1.6e-07
216591019854	HMMPfam hit to PF08281, Sigma-70, region, score 3.8e-06
216591019855	Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]; Region: COG1574
216591019856	YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling; Region: YtcJ_like; cd01300
216591019857	active site
216591019858	HMMPfam hit to PF07969, Amidohydrolase family, score 1.9e-64
216591019859	HMMPfam hit to PF01979, Amidohydrolase family, score 0.0021
216591019860	putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional; Region: PRK10682
216591019861	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
216591019862	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 1.5e-14
216591019863	Protein of unknown function (DUF3138); Region: DUF3138; pfam11336
216591019864	Outer membrane protein family (DUF1597); Region: DUF1597; pfam07642
216591019865	Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; Region: AAT; pfam03417
216591019866	The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid.  N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a...; Region: Ntn_hydrolase; cl00467
216591019867	HMMPfam hit to PF03417, Acyl-coenzyme A:6-aminopenicillanic acid acy, score 2.7e-06
216591019868	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591019869	D-galactonate transporter; Region: 2A0114; TIGR00893
216591019870	putative substrate translocation pore; other site
216591019871	10 probable transmembrane helices predicted for BCAM0427 by TMHMM2.0 at aa 83-105, 120-142, 171-193, 198-220, 276-298, 313-335, 348-367, 371-393, 406-428 and 433-455
216591019872	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.3e-62
216591019873	SH3 domain protein [Signal transduction mechanisms]; Region: COG3103
216591019874	Predicted transcriptional regulators [Transcription]; Region: COG1733
216591019875	HxlR-like helix-turn-helix; Region: HxlR; pfam01638
216591019876	HMMPfam hit to PF01638, HxlR-like helix-turn-helix, score 3.6e-38
216591019877	glutathionine S-transferase; Provisional; Region: PRK10542
216591019878	GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens; Region: GST_N_Beta; cd03057
216591019879	C-terminal domain interface [polypeptide binding]; other site
216591019880	GSH binding site (G-site) [chemical binding]; other site
216591019881	dimer interface [polypeptide binding]; other site
216591019882	C-terminal, alpha helical domain of Class Beta Glutathione S-transferases; Region: GST_C_Beta; cd03188
216591019883	dimer interface [polypeptide binding]; other site
216591019884	N-terminal domain interface [polypeptide binding]; other site
216591019885	substrate binding pocket (H-site) [chemical binding]; other site
216591019886	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 0.00045
216591019887	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 5.3e-09
216591019888	1 probable transmembrane helix predicted for BCAM0432 by TMHMM2.0 at aa 7-29
216591019889	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
216591019890	HMMPfam hit to PF02321, Outer membrane efflux protein, score 2.8e-05
216591019891	HMMPfam hit to PF02321, Outer membrane efflux protein, score 5.3e-05
216591019892	copper/silver efflux system membrane fusion protein CusB; Provisional; Region: PRK09783
216591019893	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591019894	Copper binding periplasmic protein CusF; Region: CusF_Ec; pfam11604
216591019895	1 probable transmembrane helix predicted for BCAM0434 by TMHMM2.0 at aa 9-28
216591019896	Putative silver efflux pump [Inorganic ion transport and metabolism]; Region: COG3696
216591019897	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 1.1e-224
216591019898	12 probable transmembrane helices predicted for BCAM0435 by TMHMM2.0 at aa 13-30, 342-359, 364-386, 390-412, 441-463, 483-505, 533-555, 869-891, 898-920, 924-946, 985-1004 and 1014-1036
216591019899	Copper binding periplasmic protein CusF; Region: CusF_Ec; pfam11604
216591019900	1 probable transmembrane helix predicted for BCAM0436 by TMHMM2.0 at aa 7-29
216591019901	Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]; Region: ECM27; COG0530
216591019902	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
216591019903	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
216591019904	10 probable transmembrane helices predicted for BCAM0437 by TMHMM2.0 at aa 4-26, 39-61, 76-98, 119-136, 140-162, 182-204, 219-238, 259-281, 291-308 and 313-335
216591019905	HMMPfam hit to PF01699, Sodium/calcium exchanger protein, score 1.5e-10
216591019906	HMMPfam hit to PF01699, Sodium/calcium exchanger protein, score 8e-13
216591019907	Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156; Region: RcnR-FrmR-like_DUF156; cd10153
216591019908	putative metal binding site [ion binding]; other site
216591019909	putative homodimer interface [polypeptide binding]; other site
216591019910	putative homotetramer interface [polypeptide binding]; other site
216591019911	putative homodimer-homodimer interface [polypeptide binding]; other site
216591019912	putative allosteric switch controlling residues; other site
216591019913	HMMPfam hit to PF02583, Uncharacterised BCR, COG1937, score 3.7e-06
216591019914	Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]; Region: CzcD; COG1230
216591019915	Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053
216591019916	HMMPfam hit to PF01545, Cation efflux family, score 4.2e-56
216591019917	6 probable transmembrane helices predicted for BCAM0439 by TMHMM2.0 at aa 32-54, 59-78, 98-120, 130-152, 203-225 and 230-252
216591019918	Protein of unknown function (DUF1289); Region: DUF1289; pfam06945
216591019919	HMMPfam hit to PF06945, Protein of unknown function (DUF1289), score 2.5e-16
216591019920	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591019921	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591019922	putative substrate translocation pore; other site
216591019923	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.4e-35
216591019924	10 probable transmembrane helices predicted for BCAM0441 by TMHMM2.0 at aa 34-56, 87-109, 151-168, 172-194, 214-236, 251-273, 285-304, 309-331, 344-366 and 370-392
216591019925	heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386
216591019926	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591019927	dimerization interface [polypeptide binding]; other site
216591019928	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591019929	dimer interface [polypeptide binding]; other site
216591019930	phosphorylation site [posttranslational modification]
216591019931	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591019932	ATP binding site [chemical binding]; other site
216591019933	Mg2+ binding site [ion binding]; other site
216591019934	G-X-G motif; other site
216591019935	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.1e-35
216591019936	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.8e-15
216591019937	HMMPfam hit to PF00672, HAMP domain, score 2.4e-12
216591019938	2 probable transmembrane helices predicted for BCAM0442 by TMHMM2.0 at aa 15-34 and 171-193
216591019939	heavy metal response regulator; Region: cztR_silR_copR; TIGR01387
216591019940	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591019941	active site
216591019942	phosphorylation site [posttranslational modification]
216591019943	intermolecular recognition site; other site
216591019944	dimerization interface [polypeptide binding]; other site
216591019945	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591019946	DNA binding site [nucleotide binding]
216591019947	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 9.9e-20
216591019948	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.3e-39
216591019949	Outer membrane efflux protein; Region: OEP; pfam02321
216591019950	Outer membrane efflux protein; Region: OEP; pfam02321
216591019951	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019952	HMMPfam hit to PF02321, Outer membrane efflux protein, score 0.00054
216591019953	HMMPfam hit to PF02321, Outer membrane efflux protein, score 3.5e-05
216591019954	Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: SufI; COG2132
216591019955	Multicopper oxidase; Region: Cu-oxidase_3; pfam07732
216591019956	Multicopper oxidase; Region: Cu-oxidase_2; pfam07731
216591019957	HMMPfam hit to PF07732, Multicopper oxidase, score 6.2e-54
216591019958	HMMPfam hit to PF07731, Multicopper oxidase, score 4.7e-27
216591019959	PS00080 Multicopper oxidases signature 2.
216591019960	Copper binding periplasmic protein CusF; Region: CusF_Ec; pfam11604
216591019961	CopC domain; Region: CopC; pfam04234
216591019962	HMMPfam hit to PF04234, Copper resistance protein CopC, score 6.6e-21
216591019963	2 probable transmembrane helices predicted for BCAM0449 by TMHMM2.0 at aa 9-28 and 89-108
216591019964	Copper resistance protein D; Region: CopD; cl00563
216591019965	HMMPfam hit to PF05425, Copper resistance protein D, score 5.6e-08
216591019966	8 probable transmembrane helices predicted for BCAM0450 by TMHMM2.0 at aa 13-35, 56-75, 95-117, 124-142, 157-179, 200-222, 237-259 and 289-311
216591019967	YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate...; Region: YhcR_OBF_like; cd04486
216591019968	generic binding surface I; other site
216591019969	generic binding surface II; other site
216591019970	Mycoplasma pulmonis MnuA nuclease-like; Region: MnuA_DNase1-like; cd10283
216591019971	putative active site [active]
216591019972	putative catalytic site [active]
216591019973	putative Mg binding site IVb [ion binding]; other site
216591019974	putative phosphate binding site [ion binding]; other site
216591019975	putative DNA binding site [nucleotide binding]; other site
216591019976	putative Mg binding site IVa [ion binding]; other site
216591019977	1 probable transmembrane helix predicted for BCAM0451 by TMHMM2.0 at aa 7-29
216591019978	HMMPfam hit to PF03372, Endonuclease/Exonuclease/phosphatase fa, score 1.8e-22
216591019979	Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]; Region: COG2939
216591019980	Serine carboxypeptidase; Region: Peptidase_S10; cl08270
216591019981	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019982	PS00012 Phosphopantetheine attachment site.
216591019983	HMMPfam hit to PF00450, Serine carboxypeptidase, score 9e-06
216591019984	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591019985	Frameshift after codon 148
216591019986	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 2.9e-11
216591019987	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.3e-05
216591019988	HMMPfam hit to PF01965, DJ-1/PfpI family, score 0.0003
216591019989	Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020
216591019990	conserved cys residue [active]
216591019991	1 probable transmembrane helix predicted for BCAM0456 by TMHMM2.0 at aa 7-24
216591019992	HMMPfam hit to PF01965, DJ-1/PfpI family, score 6.5e-14
216591019993	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591019994	Probable gene remnant. CDS lacks appropriate translational stop codon. Similar to the C-terminal region of Burkholderia cenocepacia HI2424 alcohol dehydrogenase GroES domain protein. UniProt:A0AXN7 (EMBL:CP000459 (359 aa) fasta scores: E()=4.4e-15, 85.246% id in 61 aa
216591019995	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591019996	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
216591019997	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591019998	catalytic residue [active]
216591019999	Putative phosphatase (DUF442); Region: DUF442; cl17385
216591020000	HMMPfam hit to PF04273, Protein of unknown function (DUF442), score 7.1e-22
216591020001	HMMPfam hit to PF00266, Aminotransferase class-V, score 7.5e-86
216591020002	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.00014
216591020003	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020004	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.
216591020005	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020006	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
216591020007	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591020008	Walker A/P-loop; other site
216591020009	ATP binding site [chemical binding]; other site
216591020010	Q-loop/lid; other site
216591020011	ABC transporter signature motif; other site
216591020012	Walker B; other site
216591020013	D-loop; other site
216591020014	H-loop/switch region; other site
216591020015	HMMPfam hit to PF00005, ABC transporter score 2.4e-65
216591020016	PS00211 ABC transporters family signature.
216591020017	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020018	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591020019	dimer interface [polypeptide binding]; other site
216591020020	conserved gate region; other site
216591020021	putative PBP binding loops; other site
216591020022	ABC-ATPase subunit interface; other site
216591020023	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.1e-31
216591020024	4 probable transmembrane helices predicted for BCAM0461 by TMHMM2.0 at aa 15-37, 50-72, 87-104 and 185-207
216591020025	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591020026	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591020027	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591020028	substrate binding pocket [chemical binding]; other site
216591020029	membrane-bound complex binding site; other site
216591020030	hinge residues; other site
216591020031	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.1e-59
216591020032	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591020033	cystathionine beta-lyase; Provisional; Region: PRK07050
216591020034	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591020035	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591020036	catalytic residue [active]
216591020037	HMMPfam hit to PF01053, Cys/Met metabolism PLP-dependent enzy, score 1.1e-94
216591020038	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.0046
216591020039	DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013
216591020040	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020041	The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold; Region: PBP2_LysR_opines_like; cd08415
216591020042	putative dimerization interface [polypeptide binding]; other site
216591020043	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.8e-16
216591020044	PS00228 Tubulin-beta mRNA autoregulation signal.
216591020045	Predicted helix-turn-helix motif with score 1296.000, SD 3.60 at aa 14-35, sequence GSTSKAAGVLEISQPAVSQSIR
216591020046	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020047	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.5e-36
216591020048	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020049	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591020050	putative substrate translocation pore; other site
216591020051	HMMPfam hit to PF00083, Sugar (and other) transporter score 8.9e-05
216591020052	11 probable transmembrane helices predicted for BCAM0465 by TMHMM2.0 at aa 15-37, 50-72, 82-104, 144-163, 167-189, 215-237, 252-274, 281-300, 305-327, 336-358 and 373-392
216591020053	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.7e-46
216591020054	PS00216 Sugar transport proteins signature 1.
216591020055	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591020056	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020057	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591020058	putative effector binding pocket; other site
216591020059	dimerization interface [polypeptide binding]; other site
216591020060	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.5e-16
216591020061	Predicted helix-turn-helix motif with score 1556.000, SD 4.49 at aa 17-38, sequence SSFAEAARQLGVTSSVVTNRIQ
216591020062	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020063	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.9e-44
216591020064	3-hydroxyanthranilic acid dioxygenase; Region: 3-HAO; cl17399
216591020065	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591020066	Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like; Region: ALDH_HMSADH_HapE; cd07115
216591020067	NAD(P) binding site [chemical binding]; other site
216591020068	catalytic residues [active]
216591020069	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 5.9e-270
216591020070	PS00070 Aldehyde dehydrogenases cysteine active site.
216591020071	Alcohol dehydrogenase, class IV [Energy production and conversion]; Region: EutG; COG1454
216591020072	Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes; Region: MAR; cd08177
216591020073	active site
216591020074	dimer interface [polypeptide binding]; other site
216591020075	metal binding site [ion binding]; metal-binding site
216591020076	HMMPfam hit to PF00465, Iron-containing alcohol dehydrogenase, score 2.8e-18
216591020077	YciI-like protein; Reviewed; Region: PRK12863
216591020078	HMMPfam hit to PF03795, YCII-related domain, score 9.3e-17
216591020079	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cd03467
216591020080	iron-sulfur cluster [ion binding]; other site
216591020081	[2Fe-2S] cluster binding site [ion binding]; other site
216591020082	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 1.5e-05
216591020083	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591020084	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591020085	trimer interface [polypeptide binding]; other site
216591020086	eyelet of channel; other site
216591020087	HMMPfam hit to PF00267, Gram-negative porin, score 0.0052
216591020088	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591020089	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
216591020090	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
216591020091	glutaminase active site [active]
216591020092	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
216591020093	dimer interface [polypeptide binding]; other site
216591020094	active site
216591020095	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
216591020096	dimer interface [polypeptide binding]; other site
216591020097	active site
216591020098	HMMPfam hit to PF01380, SIS domain, score 1.1e-23
216591020099	HMMPfam hit to PF01380, SIS domain, score 3.8e-31
216591020100	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 2.6e-35
216591020101	PS00443 Glutamine amidotransferases class-II active site.
216591020102	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
216591020103	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591020104	AsnC family; Region: AsnC_trans_reg; pfam01037
216591020105	HMMPfam hit to PF01037, AsnC family, score 1.7e-20
216591020106	Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557
216591020107	oligomerization interface [polypeptide binding]; other site
216591020108	active site
216591020109	metal binding site [ion binding]; metal-binding site
216591020110	HMMPfam hit to PF02548, Ketopantoate hydroxymethyltransferase, score 2.2e-104
216591020111	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591020112	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591020113	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591020114	Predicted helix-turn-helix motif with score 1705.000, SD 4.99 at aa 187-208, sequence RSLDEWGRQVGATRRTLSRLFR
216591020115	methylated-DNA--protein-cysteine methyltransferase; Provisional; Region: PRK00901
216591020116	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
216591020117	DNA binding site [nucleotide binding]
216591020118	active site
216591020119	HMMPfam hit to PF01035, 6-O-methylguanine DNA methyltransferase, score 1.2e-46
216591020120	PS00374 Methylated-DNA--protein-cysteine methyltransferase active site.
216591020121	Adenosine deaminase [Nucleotide transport and metabolism]; Region: Ada; COG2169
216591020122	Metal binding domain of Ada; Region: Ada_Zn_binding; pfam02805
216591020123	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591020124	AlkA N-terminal domain; Region: AlkA_N; pfam06029
216591020125	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cl14786
216591020126	HMMPfam hit to PF06029, AlkA N-terminal domain, score 1.2e-37
216591020127	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix, score 2.7e-08
216591020128	PS00041 Bacterial regulatory proteins, araC family signature.
216591020129	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix, score 1.7e-06
216591020130	Predicted helix-turn-helix motif with score 1671.000, SD 4.88 at aa 101-122, sequence HSVAALARRIGVTERHLRRIFG
216591020131	PS00136 Serine proteases, subtilase family, aspartic acid active site.
216591020132	HMMPfam hit to PF02805, Metal binding domain of Ada, score 3.1e-41
216591020133	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020134	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591020135	putative substrate translocation pore; other site
216591020136	HMMPfam hit to PF00083, Sugar (and other) transporter score 0.00017
216591020137	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.2e-60
216591020138	9 probable transmembrane helices predicted for BCAM0484 by TMHMM2.0 at aa 69-91, 101-123, 159-181, 185-207, 251-270, 285-307, 327-358, 378-397 and 410-432
216591020139	PS00211 ABC transporters family signature.
216591020140	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591020141	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591020142	DNA binding site [nucleotide binding]
216591020143	domain linker motif; other site
216591020144	Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily; Region: PBP1_LacI_sugar_binding_like; cd06267
216591020145	dimerization interface [polypeptide binding]; other site
216591020146	ligand binding site [chemical binding]; other site
216591020147	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 1.2e-12
216591020148	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 1.7e-08
216591020149	Predicted helix-turn-helix motif with score 1897.000, SD 5.65 at aa 43-64, sequence PTIRDVAAEAGVSVATVSKYVN
216591020150	PS00356 Bacterial regulatory proteins, lacI family signature.
216591020151	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591020152	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591020153	NAD(P) binding site [chemical binding]; other site
216591020154	active site
216591020155	HMMPfam hit to PF04321, RmlD substrate binding domain, score 0.00093
216591020156	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 0.0049
216591020157	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase f, score 3e-08
216591020158	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/i, score 2.9e-08
216591020159	HMMPfam hit to PF07993, Male sterility protein, score 2.6e-05
216591020160	Protein of unknown function (DUF1330); Region: DUF1330; pfam07045
216591020161	HMMPfam hit to PF07045, Protein of unknown function (DUF1330), score 1.3e-22
216591020162	Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600
216591020163	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
216591020164	DNA binding residues [nucleotide binding]
216591020165	HMMPfam hit to PF00376, MerR family regulatory protein, score 1.8e-10
216591020166	PS00552 Bacterial regulatory proteins, merR family signature.
216591020167	Predicted helix-turn-helix motif with score 1323.000, SD 3.69 at aa 5-26, sequence MKIGELAKASGLAASRIRFYEA
216591020168	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591020169	Old yellow enzyme (OYE)-related FMN binding domain, group 2.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as...; Region: OYE_like_2_FMN; cd04733
216591020170	putative active site [active]
216591020171	putative FMN binding site [chemical binding]; other site
216591020172	putative substrate binding site [chemical binding]; other site
216591020173	putative catalytic residue [active]
216591020174	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 7.6e-57
216591020175	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
216591020176	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591020177	N-terminal plug; other site
216591020178	ligand-binding site [chemical binding]; other site
216591020179	HMMPfam hit to PF00593, TonB dependent receptor, score 5.6e-16
216591020180	PS00455 Putative AMP-binding domain signature.
216591020181	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 2.9e-20
216591020182	Uncharacterized iron-regulated membrane protein [Function unknown]; Region: PiuB; COG3182
216591020183	PepSY-associated TM helix; Region: PepSY_TM_1; pfam13172
216591020184	PepSY-associated TM helix; Region: PepSY_TM_2; pfam13703
216591020185	6 probable transmembrane helices predicted for BCAM0492 by TMHMM2.0 at aa 27-49, 156-178, 199-221, 320-342, 407-429 and 454-476
216591020186	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.0038
216591020187	HMMPfam hit to PF03413, Peptidase propeptide and YPEB domain, score 0.00036
216591020188	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.028
216591020189	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.092
216591020190	HMMPfam hit to PF03413, Peptidase propeptide and YPEB domain, score 0.00064
216591020191	HMMPfam hit to PF03929, PepSY-associated TM helix, score 1.2
216591020192	2 probable transmembrane helices predicted for BCAM0493 by TMHMM2.0 at aa 17-39 and 108-130
216591020193	Predicted helix-turn-helix motif with score 1128.000, SD 3.03 at aa 96-117, sequence FMLTSLAAHRDIHPQTLRTLFR
216591020194	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591020195	6 probable transmembrane helices predicted for BCAM0496 by TMHMM2.0 at aa 15-37, 44-66, 70-92, 119-141, 154-176 and 189-208
216591020196	HMMPfam hit to PF01810, LysE type translocator, score 3.2e-24
216591020197	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020198	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020199	PS00369 PTS HPR component histidine phosphorylation site signature.
216591020200	NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11; Region: ALDH_F11_NP-GAPDH; cd07082
216591020201	NAD-dependent aldehyde dehydrogenases [Energy production and conversion]; Region: PutA; COG1012
216591020202	tetrameric interface [polypeptide binding]; other site
216591020203	activator binding site; other site
216591020204	NADP binding site [chemical binding]; other site
216591020205	substrate binding site [chemical binding]; other site
216591020206	catalytic residues [active]
216591020207	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.6e-75
216591020208	PS00070 Aldehyde dehydrogenases cysteine active site.
216591020209	Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; Region: Fiu; COG4774
216591020210	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591020211	N-terminal plug; other site
216591020212	ligand-binding site [chemical binding]; other site
216591020213	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 4.1e-25
216591020214	HMMPfam hit to PF00593, TonB dependent receptor, score 1.7e-30
216591020215	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020216	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591020217	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591020218	dimerization interface [polypeptide binding]; other site
216591020219	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.3e-35
216591020220	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-17
216591020221	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020222	Predicted helix-turn-helix motif with score 1735.000, SD 5.10 at aa 14-35, sequence ESFTHAAKELFLTESAVSRQIA
216591020223	Domain of unknown function (DUF1338); Region: DUF1338; pfam07063
216591020224	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020225	CsbD-like; Region: CsbD; cl17424
216591020226	HMMPfam hit to PF05532, CsbD-like, score 6.1e-19
216591020227	outer membrane lipoprotein; Provisional; Region: PRK11023
216591020228	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 1e-12
216591020229	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459
216591020230	PAS domain; Region: PAS_9; pfam13426
216591020231	PAS domain S-box; Region: sensory_box; TIGR00229
216591020232	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591020233	putative active site [active]
216591020234	heme pocket [chemical binding]; other site
216591020235	PAS domain S-box; Region: sensory_box; TIGR00229
216591020236	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591020237	putative active site [active]
216591020238	heme pocket [chemical binding]; other site
216591020239	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591020240	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591020241	DNA binding residues [nucleotide binding]
216591020242	dimerization interface [polypeptide binding]; other site
216591020243	HMMPfam hit to PF00989, PAS fold, score 0.00073
216591020244	HMMPfam hit to PF08448, PAS fold, score 0.00033
216591020245	HMMPfam hit to PF00989, PAS fold, score 0.039
216591020246	HMMPfam hit to PF08447, PAS fold, score 0.0026
216591020247	HMMPfam hit to PF08281, Sigma-70, region, score 0.0018
216591020248	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 1.4e-19
216591020249	Predicted helix-turn-helix motif with score 1241.000, SD 3.41 at aa 446-467, sequence LADKEIAGRLGLAPNTVRNHVA
216591020250	CsbD-like; Region: CsbD; pfam05532
216591020251	HMMPfam hit to PF05532, CsbD-like, score 1.4e-19
216591020252	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591020253	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591020254	dimerization interface [polypeptide binding]; other site
216591020255	ligand binding site [chemical binding]; other site
216591020256	HMMPfam hit to PF01094, Receptor family ligand binding region, score 7.6e-47
216591020257	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591020258	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 4.6e-84
216591020259	2 probable transmembrane helices predicted for BCAM0510 by TMHMM2.0 at aa 15-37 and 46-68
216591020260	Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680
216591020261	Beta-lactamase; Region: Beta-lactamase; pfam00144
216591020262	HMMPfam hit to PF00144, Beta-lactamase, score 1.6e-74
216591020263	Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]; Region: COG0075
216591020264	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591020265	catalytic residue [active]
216591020266	HMMPfam hit to PF00266, Aminotransferase class-V, score 0.00025
216591020267	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4430
216591020268	Bacteriocin-protection, YdeI or OmpD-Associated; Region: OmdA; pfam13376
216591020269	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591020270	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591020271	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 8.6e-13
216591020272	Predicted helix-turn-helix motif with score 1543.000, SD 4.44 at aa 29-50, sequence LNYRDLANEVGIKAASIYHHFE
216591020273	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591020274	GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing...; Region: GST_N_GTT2_like; cd03051
216591020275	putative C-terminal domain interface [polypeptide binding]; other site
216591020276	putative GSH binding site (G-site) [chemical binding]; other site
216591020277	putative dimer interface [polypeptide binding]; other site
216591020278	C-terminal, alpha helical domain of GTT2-like Glutathione S-transferases; Region: GST_C_GTT2_like; cd03182
216591020279	putative N-terminal domain interface [polypeptide binding]; other site
216591020280	putative dimer interface [polypeptide binding]; other site
216591020281	putative substrate binding pocket (H-site) [chemical binding]; other site
216591020282	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 1.6e-15
216591020283	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 7.4e-07
216591020284	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_19; cd07262
216591020285	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591020286	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 6.4e-09
216591020287	PS00079 Multicopper oxidases signature 1.
216591020288	pca operon transcription factor PcaQ; Region: TF_pcaQ; TIGR02424
216591020289	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020290	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591020291	dimerization interface [polypeptide binding]; other site
216591020292	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.5e-18
216591020293	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.3e-16
216591020294	Predicted helix-turn-helix motif with score 1208.000, SD 3.30 at aa 31-52, sequence GSLTRVAEHMASSQPAVTNALS
216591020295	malic enzyme; Reviewed; Region: PRK12861
216591020296	Malic enzyme, N-terminal domain; Region: malic; pfam00390
216591020297	NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311
216591020298	putative NAD(P) binding site [chemical binding]; other site
216591020299	Phosphotransacetylase [Energy production and conversion]; Region: Pta; COG0280
216591020300	HMMPfam hit to PF00390, Malic enzyme, N-terminal domain, score 2.5e-76
216591020301	HMMPfam hit to PF03949, Malic enzyme, NAD binding domain, score 1.4e-124
216591020302	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020303	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020304	HMMPfam hit to PF01515, Phosphate acetyl/butaryl transferase, score 5.7e-109
216591020305	transposase/IS protein; Provisional; Region: PRK09183
216591020306	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591020307	Walker A motif; other site
216591020308	ATP binding site [chemical binding]; other site
216591020309	Walker B motif; other site
216591020310	HMMPfam hit to PF01695, IstB-like ATP binding protein, score 9.6e-88
216591020311	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020312	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
216591020313	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
216591020314	DNA-binding interface [nucleotide binding]; DNA binding site
216591020315	Integrase core domain; Region: rve; pfam00665
216591020316	HMMPfam hit to PF00665, Integrase core domain, score 2.7e-25
216591020317	HMMPfam hit to PF02796, Helix-turn-helix domain of resolvase, score 0.0028
216591020318	Predicted helix-turn-helix motif with score 2020.000, SD 6.07 at aa 18-39, sequence VSEREIARRLGISRNTVARYLS
216591020319	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591020320	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
216591020321	Walker A motif; other site
216591020322	ATP binding site [chemical binding]; other site
216591020323	Walker B motif; other site
216591020324	arginine finger; other site
216591020325	Predicted helix-turn-helix motif with score 1430.000, SD 4.06 at aa 367-388, sequence FSLTDIGEVAGKDKSTVSRQIG
216591020326	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.2e-37
216591020327	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020328	Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]; Region: COG0436
216591020329	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591020330	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591020331	homodimer interface [polypeptide binding]; other site
216591020332	catalytic residue [active]
216591020333	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.5e-17
216591020334	Pyridoxamine 5'-phosphate oxidase; Region: Pyridox_oxase_2; pfam12766
216591020335	PPOX class probable FMN-dependent enzyme, alr4036 family; Region: PPOX_FMN_cyano; TIGR04026
216591020336	HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase, score 1.9e-06
216591020337	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591020338	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020339	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591020340	dimerization interface [polypeptide binding]; other site
216591020341	substrate binding pocket [chemical binding]; other site
216591020342	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-31
216591020343	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.4e-14
216591020344	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020345	Predicted helix-turn-helix motif with score 1579.000, SD 4.56 at aa 24-45, sequence LNFRAAADEIGVTQGAVAQQVR
216591020346	3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK05565
216591020347	putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; Region: BKR_like_SDR_like; cd05344
216591020348	putative NAD(P) binding site [chemical binding]; other site
216591020349	putative active site [active]
216591020350	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.1e-08
216591020351	Epoxide hydrolase N terminus; Region: EHN; pfam06441
216591020352	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591020353	1 probable transmembrane helix predicted for BCAM0529 by TMHMM2.0 at aa 13-35
216591020354	HMMPfam hit to PF06441, Epoxide hydrolase N terminus, score 3.6e-58
216591020355	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.7e-07
216591020356	PS00294 Prenyl group binding site (CAAX box).
216591020357	3 probable transmembrane helices predicted for BCAM0529A by TMHMM2.0 at aa 13-35, 55-77 and 89-111
216591020358	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020359	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591020360	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591020361	DNA-binding site [nucleotide binding]; DNA binding site
216591020362	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591020363	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591020364	homodimer interface [polypeptide binding]; other site
216591020365	catalytic residue [active]
216591020366	HMMPfam hit to PF00155, Aminotransferase class I and II, score 4e-19
216591020367	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 6.7e-14
216591020368	Predicted helix-turn-helix motif with score 1263.000, SD 3.49 at aa 33-54, sequence PSIREYAEASGCSKNTVISAFE
216591020369	Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR); Region: HMG-CoA_reductase_classII; cd00644
216591020370	homodimer interface [polypeptide binding]; other site
216591020371	catalytic residues [active]
216591020372	NAD binding site [chemical binding]; other site
216591020373	substrate binding pocket [chemical binding]; other site
216591020374	flexible flap; other site
216591020375	PS00066 Hydroxymethylglutaryl-coenzyme A reductases signature 1.
216591020376	PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2.
216591020377	PS01192 Hydroxymethylglutaryl-coenzyme A reductases signature 3.
216591020378	2 probable transmembrane helices predicted for BCAM0532 by TMHMM2.0 at aa 43-65 and 75-97
216591020379	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020380	10 probable transmembrane helices predicted for BCAM0533 by TMHMM2.0 at aa 7-29, 39-61, 108-130, 140-157, 162-184, 188-207, 308-330, 356-378, 391-410 and 414-436
216591020381	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591020382	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 2.7e-07
216591020383	1 probable transmembrane helix predicted for BCAM0535 by TMHMM2.0 at aa 13-35
216591020384	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591020385	1 probable transmembrane helix predicted for BCAM0536 by TMHMM2.0 at aa 44-66
216591020386	methyl indole-3-acetate methyltransferase; Region: PLN02211; cl17657
216591020387	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591020388	amidase; Provisional; Region: PRK07487
216591020389	Amidase; Region: Amidase; cl11426
216591020390	HMMPfam hit to PF01425, Amidase, score 2.3e-74
216591020391	PS00571 Amidases signature.
216591020392	Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins; Region: RHOD_1; cd01522
216591020393	active site residue [active]
216591020394	HMMPfam hit to PF00581, Rhodanese-like domain, score 1.2e-08
216591020395	serine O-acetyltransferase; Region: cysE; TIGR01172
216591020396	Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of...; Region: LbH_SAT; cd03354
216591020397	trimer interface [polypeptide binding]; other site
216591020398	active site
216591020399	substrate binding site [chemical binding]; other site
216591020400	CoA binding site [chemical binding]; other site
216591020401	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.52
216591020402	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.39
216591020403	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 28
216591020404	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591020405	non-specific DNA binding site [nucleotide binding]; other site
216591020406	salt bridge; other site
216591020407	sequence-specific DNA binding site [nucleotide binding]; other site
216591020408	HMMPfam hit to PF01381, Helix-turn-helix, score 5.5e-17
216591020409	Predicted helix-turn-helix motif with score 1705.000, SD 4.99 at aa 21-42, sequence WSQEQLAEHAGLNRSYVGEIER
216591020410	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
216591020411	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
216591020412	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591020413	catalytic residue [active]
216591020414	HMMPfam hit to PF00266, Aminotransferase class-V, score 2.5e-205
216591020415	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.00046
216591020416	Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that...; Region: AAK; cl00452
216591020417	nucleotide binding site [chemical binding]; other site
216591020418	substrate binding site [chemical binding]; other site
216591020419	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
216591020420	active site
216591020421	phosphorylation site [posttranslational modification]
216591020422	HMMPfam hit to PF00359, Phosphoenolpyruvate-dependent sugar phosph, score 5.7e-06
216591020423	PS00372 PTS EIIA domains phosphorylation site signature 2.
216591020424	1 probable transmembrane helix predicted for BCAM0545a by TMHMM2.0 at aa 37-59
216591020425	PS00190 Cytochrome c family heme-binding site signature.
216591020426	LysE type translocator; Region: LysE; cl00565
216591020427	HMMPfam hit to PF01810, LysE type translocator, score 6.1e-30
216591020428	5 probable transmembrane helices predicted for BCAM0547 by TMHMM2.0 at aa 7-29, 44-66, 116-138, 148-170 and 183-202
216591020429	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
216591020430	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
216591020431	ring oligomerisation interface [polypeptide binding]; other site
216591020432	ATP/Mg binding site [chemical binding]; other site
216591020433	stacking interactions; other site
216591020434	hinge regions; other site
216591020435	HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin family, score 2e-197
216591020436	PS00296 Chaperonins cpn60 signature.
216591020437	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
216591020438	oligomerisation interface [polypeptide binding]; other site
216591020439	mobile loop; other site
216591020440	roof hairpin; other site
216591020441	HMMPfam hit to PF00166, Chaperonin 10 Kd subunit, score 6.1e-49
216591020442	PS00681 Chaperonins cpn10 signature.
216591020443	Secretory lipase; Region: LIP; pfam03583
216591020444	HMMPfam hit to PF03583, Secretory lipase, score 8.6e-08
216591020445	Class II Aldolase and Adducin N-terminal domain; Region: Aldolase_II; pfam00596
216591020446	active site
216591020447	Zn2+ binding site [ion binding]; other site
216591020448	intersubunit interface [polypeptide binding]; other site
216591020449	HMMPfam hit to PF00596, Class II Aldolase and Adducin N-terminal, score 3.4e-05
216591020450	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020451	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591020452	Walker A motif; other site
216591020453	ATP binding site [chemical binding]; other site
216591020454	Walker B motif; other site
216591020455	arginine finger; other site
216591020456	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 2.2e-146
216591020457	HMMPfam hit to PF07728, ATPase family associated with various, score 0.00015
216591020458	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591020459	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591020460	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591020461	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591020462	putative PBP binding loops; other site
216591020463	dimer interface [polypeptide binding]; other site
216591020464	ABC-ATPase subunit interface; other site
216591020465	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.3e-17
216591020466	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020467	6 probable transmembrane helices predicted for BCAM0553 by TMHMM2.0 at aa 13-30, 73-95, 108-125, 130-149, 174-196 and 222-244
216591020468	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591020469	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
216591020470	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.4e-21
216591020471	5 probable transmembrane helices predicted for BCAM0554 by TMHMM2.0 at aa 26-43, 84-103, 118-137, 144-163 and 238-260
216591020472	PS00237 G-protein coupled receptors signature.
216591020473	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591020474	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
216591020475	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020476	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
216591020477	alkanesulfonate monooxygenase, FMNH(2)-dependent; Region: alk_sulf_monoox; TIGR03565
216591020478	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892
216591020479	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 1.5e-05
216591020480	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
216591020481	Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]; Region: TonB; COG0810
216591020482	Gram-negative bacterial tonB protein; Region: TonB; pfam03544
216591020483	HMMPfam hit to PF03544, Gram-negative bacterial tonB protein, score 2.6e-09
216591020484	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
216591020485	3 probable transmembrane helices predicted for BCAM0560 by TMHMM2.0 at aa 13-35, 120-142 and 166-188
216591020486	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 1e-40
216591020487	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
216591020488	TolR protein; Region: tolR; TIGR02801
216591020489	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 2.4e-24
216591020490	1 probable transmembrane helix predicted for BCAM0561 by TMHMM2.0 at aa 20-42
216591020491	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591020492	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020493	putative substrate translocation pore; other site
216591020494	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591020495	12 probable transmembrane helices predicted for BCAM0563 by TMHMM2.0 at aa 20-42, 52-74, 81-103, 107-129, 141-163, 168-190, 223-245, 255-277, 284-302, 306-328, 341-363 and 367-389
216591020496	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.2e-16
216591020497	Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]; Region: CirA; COG1629
216591020498	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591020499	N-terminal plug; other site
216591020500	ligand-binding site [chemical binding]; other site
216591020501	1 probable transmembrane helix predicted for BCAM0564 by TMHMM2.0 at aa 21-43
216591020502	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 6.1e-18
216591020503	HMMPfam hit to PF00593, TonB dependent receptor, score 2.4e-20
216591020504	Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR7; cd08276
216591020505	NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604
216591020506	putative NAD(P) binding site [chemical binding]; other site
216591020507	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.2e-33
216591020508	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 3.2e-15
216591020509	transcriptional regulator; Provisional; Region: PRK10632
216591020510	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020511	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_6; cd08475
216591020512	putative effector binding pocket; other site
216591020513	putative dimerization interface [polypeptide binding]; other site
216591020514	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.4e-14
216591020515	Predicted helix-turn-helix motif with score 1526.000, SD 4.38 at aa 18-39, sequence GSFAAAALRLGMTRSAVAKIVA
216591020516	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020517	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.1e-48
216591020518	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591020519	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020520	putative substrate translocation pore; other site
216591020521	12 probable transmembrane helices predicted for BCAM0567 by TMHMM2.0 at aa 20-42, 57-79, 86-105, 110-132, 145-167, 177-196, 248-270, 280-299, 312-331, 336-358, 365-387 and 402-419
216591020522	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.8e-50
216591020523	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020524	short chain dehydrogenase; Provisional; Region: PRK07577
216591020525	classical (c) SDRs; Region: SDR_c; cd05233
216591020526	NAD(P) binding site [chemical binding]; other site
216591020527	active site
216591020528	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.6e-27
216591020529	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00042
216591020530	Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]; Region: AslA; COG3119
216591020531	Sulfatase; Region: Sulfatase; cl17466
216591020532	Sulfatase; Region: Sulfatase; cl17466
216591020533	Sulfatase; Region: Sulfatase; cl17466
216591020534	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020535	HMMPfam hit to PF00884, Sulfatase, score 3.5e-37
216591020536	PS00149 Sulfatases signature 2.
216591020537	Uncharacterized conserved protein [Function unknown]; Region: COG1262
216591020538	Formylglycine-generating sulfatase enzyme; Region: FGE-sulfatase; pfam03781
216591020539	1 probable transmembrane helix predicted for BCAM0570 by TMHMM2.0 at aa 5-27
216591020540	HMMPfam hit to PF03781, Domain of unknown function (DUF323), score 4.6e-70
216591020541	NLPA lipoprotein; Region: Lipoprotein_9; pfam03180
216591020542	HMMPfam hit to PF03180, NLPA lipoprotein, score 3.8e-41
216591020543	HMMPfam hit to PF03692, Uncharacterised protein family (UPF0153), score 0.0062
216591020544	Antibiotic biosynthesis monooxygenase; Region: ABM; cl10022
216591020545	4 probable transmembrane helices predicted for BCAM0574 by TMHMM2.0 at aa 12-31, 36-53, 60-77 and 92-109
216591020546	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591020547	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020548	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591020549	dimerization interface [polypeptide binding]; other site
216591020550	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.8e-31
216591020551	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.2e-13
216591020552	Predicted helix-turn-helix motif with score 1177.000, SD 3.20 at aa 16-37, sequence RNFRTTAAALHATPAAISQRLK
216591020553	hypothetical protein; Provisional; Region: PRK05463
216591020554	HMMPfam hit to PF07286, Protein of unknown function (DUF1445), score 1e-92
216591020555	benzoate transport; Region: 2A0115; TIGR00895
216591020556	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020557	putative substrate translocation pore; other site
216591020558	HMMPfam hit to PF00083, Sugar (and other) transporter score 9.4e-08
216591020559	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.6e-50
216591020560	12 probable transmembrane helices predicted for BCAM0577 by TMHMM2.0 at aa 52-69, 73-92, 104-121, 125-147, 159-181, 191-208, 249-271, 276-298, 311-328, 338-360, 373-392 and 397-419
216591020561	PS00217 Sugar transport proteins signature 2.
216591020562	5-oxoprolinase; Region: PLN02666
216591020563	Hydantoinase/oxoprolinase N-terminal region; Region: Hydant_A_N; pfam05378
216591020564	Hydantoinase/oxoprolinase; Region: Hydantoinase_A; pfam01968
216591020565	N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: HyuB; COG0146
216591020566	HMMPfam hit to PF05378, Hydantoinase/oxoprolinase N-terminal r, score 2.1e-83
216591020567	Predicted helix-turn-helix motif with score 1213.000, SD 3.32 at aa 187-208, sequence RMLAELARRIGFTQVSVSHEVS
216591020568	HMMPfam hit to PF01968, Hydantoinase/oxoprolinase, score 6.9e-130
216591020569	HMMPfam hit to PF02538, Hydantoinase B/oxoprolinase, score 1.4e-279
216591020570	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020571	RNase II stability modulator; Provisional; Region: PRK10060
216591020572	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591020573	metal binding site [ion binding]; metal-binding site
216591020574	active site
216591020575	I-site; other site
216591020576	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591020577	HMMPfam hit to PF00990, GGDEF domain, score 2.4e-55
216591020578	HMMPfam hit to PF00563, EAL domain, score 2.5e-118
216591020579	enoyl-CoA hydratase; Validated; Region: PRK08788
216591020580	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591020581	substrate binding site [chemical binding]; other site
216591020582	oxyanion hole (OAH) forming residues; other site
216591020583	trimer interface [polypeptide binding]; other site
216591020584	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 1.2e-08
216591020585	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591020586	Domain of Unknown Function with PDB structure (DUF3857); Region: DUF3857; pfam12969
216591020587	Transglutaminase-like superfamily; Region: Transglut_core; pfam01841
216591020588	PS00306 Caseins alpha/beta signature.
216591020589	Cupin; Region: Cupin_6; pfam12852
216591020590	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591020591	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591020592	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591020593	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 9.4e-10
216591020594	PS00041 Bacterial regulatory proteins, araC family signature.
216591020595	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 7.9e-10
216591020596	PS00041 Bacterial regulatory proteins, araC family signature.
216591020597	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020598	putative substrate translocation pore; other site
216591020599	12 probable transmembrane helices predicted for BCAM0584 by TMHMM2.0 at aa 20-42, 55-77, 87-104, 111-133, 148-170, 175-197, 217-239, 246-268, 283-302, 309-331, 341-363 and 370-392
216591020600	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.9e-49
216591020601	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591020602	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591020603	active site
216591020604	catalytic tetrad [active]
216591020605	HMMPfam hit to PF00248, Aldo/keto reductase family, score 1.3e-46
216591020606	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591020607	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020608	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474
216591020609	putative effector binding pocket; other site
216591020610	putative dimerization interface [polypeptide binding]; other site
216591020611	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.9e-17
216591020612	Predicted helix-turn-helix motif with score 1157.000, SD 3.13 at aa 18-39, sequence GGFRDAARMTGLSASGLSEAVR
216591020613	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020614	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.8e-31
216591020615	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
216591020616	Phosphoenolpyruvate phosphomutase; Region: PEP_mutase; pfam13714
216591020617	tetramer interface [polypeptide binding]; other site
216591020618	active site
216591020619	Mg2+/Mn2+ binding site [ion binding]; other site
216591020620	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591020621	MarR family; Region: MarR_2; pfam12802
216591020622	HMMPfam hit to PF03551, Transcriptional regulator PadR-like family, score 0.00033
216591020623	HMMPfam hit to PF01047, MarR family, score 8.4e-15
216591020624	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591020625	GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved...; Region: GST_N_GTT1_like; cd03046
216591020626	putative C-terminal domain interface [polypeptide binding]; other site
216591020627	putative GSH binding site (G-site) [chemical binding]; other site
216591020628	putative dimer interface [polypeptide binding]; other site
216591020629	C-terminal, alpha helical domain of an unknown subfamily 8 of Glutathione S-transferases; Region: GST_C_8; cd03207
216591020630	dimer interface [polypeptide binding]; other site
216591020631	N-terminal domain interface [polypeptide binding]; other site
216591020632	putative substrate binding pocket (H-site) [chemical binding]; other site
216591020633	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 1.1e-19
216591020634	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 3.4e-08
216591020635	flavin mononucleotide phosphatase; Provisional; Region: PRK10748
216591020636	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591020637	motif II; other site
216591020638	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 3.3e-19
216591020639	Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]; Region: COG2423
216591020640	ornithine cyclodeaminase; Validated; Region: PRK06823; cl17400
216591020641	HMMPfam hit to PF02423, Ornithine cyclodeaminase/mu-crystalli, score 2.1e-54
216591020642	Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]; Region: COG3616
216591020643	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1; Region: PLPDE_III_DSD_D-TA_like_1; cd06812
216591020644	dimer interface [polypeptide binding]; other site
216591020645	active site
216591020646	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
216591020647	substrate binding site [chemical binding]; other site
216591020648	catalytic residue [active]
216591020649	HMMPfam hit to PF01168, Alanine racemase, N-terminal domain, score 2.6e-09
216591020650	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591020651	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020652	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591020653	dimerization interface [polypeptide binding]; other site
216591020654	HMMPfam hit to PF03466, LysR substrate binding domain, score 3e-31
216591020655	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.2e-17
216591020656	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020657	Predicted helix-turn-helix motif with score 1486.000, SD 4.25 at aa 17-38, sequence RSLAAAARLLDLTPPAVTIRLQ
216591020658	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020659	aminoethylphosphonate catabolism associated LysR family transcriptional regulator; Region: phn_lysR; TIGR03339
216591020660	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591020661	dimerization interface [polypeptide binding]; other site
216591020662	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2e-17
216591020663	Predicted helix-turn-helix motif with score 1463.000, SD 4.17 at aa 16-37, sequence GGFTAAARALSTSQTTITSQIQ
216591020664	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.1e-43
216591020665	Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP); Region: HEPD; cd08182
216591020666	Iron-containing alcohol dehydrogenase; Region: Fe-ADH; pfam00465
216591020667	putative active site [active]
216591020668	metal binding site [ion binding]; metal-binding site
216591020669	HMMPfam hit to PF00465, Iron-containing alcohol dehydrogenase, score 9.2e-22
216591020670	PS00913 Iron-containing alcohol dehydrogenases signature 1.
216591020671	benzoate transport; Region: 2A0115; TIGR00895
216591020672	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020673	putative substrate translocation pore; other site
216591020674	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020675	12 probable transmembrane helices predicted for BCAM0597 by TMHMM2.0 at aa 20-37, 63-85, 92-114, 118-140, 153-175, 181-200, 279-301, 311-333, 340-359, 364-386, 399-421 and 431-453
216591020676	HMMPfam hit to PF00083, Sugar (and other) transporter score 2.1e-10
216591020677	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3e-34
216591020678	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020679	PS00216 Sugar transport proteins signature 1.
216591020680	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox_2; pfam07992
216591020681	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591020682	HMMPfam hit to PF03486, HI0933-like protein, score 0.00049
216591020683	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 1.6e-07
216591020684	1 probable transmembrane helix predicted for BCAM0598 by TMHMM2.0 at aa 7-24
216591020685	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591020686	Predicted transcriptional regulator [Transcription]; Region: COG1959
216591020687	Transcriptional regulator; Region: Rrf2; pfam02082
216591020688	HMMPfam hit to PF02082, Transcriptional regulator, score 2.5e-32
216591020689	HMMPfam hit to PF08279, HTH domain, score 0.0015
216591020690	Predicted helix-turn-helix motif with score 1059.000, SD 2.79 at aa 24-45, sequence LTSETIATMLCTNPVVVRRLLG
216591020691	Domain of unknown function (DUF2760); Region: DUF2760; pfam10816
216591020692	Nucleotide-binding domain of the HSP70 family; Region: HSP70_NBD; cd10170
216591020693	nucleotide binding site [chemical binding]; other site
216591020694	putative NEF/HSP70 interaction site [polypeptide binding]; other site
216591020695	SBD interface [polypeptide binding]; other site
216591020696	PS00297 Heat shock hsp70 proteins family signature 1.
216591020697	Nucleotide-binding domain of the HSP70 family; Region: HSP70_NBD; cd10170
216591020698	nucleotide binding site [chemical binding]; other site
216591020699	putative NEF/HSP70 interaction site [polypeptide binding]; other site
216591020700	SBD interface [polypeptide binding]; other site
216591020701	DNA-K related protein; Region: DUF3731; pfam12531
216591020702	Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]; Region: COG4874
216591020703	Amidinotransferase; Region: Amidinotransf; pfam02274
216591020704	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020705	ornithine cyclodeaminase; Validated; Region: PRK07589
216591020706	ornithine cyclodeaminase; Validated; Region: PRK06823; cl17400
216591020707	HMMPfam hit to PF02423, Ornithine cyclodeaminase/mu-crystalli, score 1e-118
216591020708	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020709	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591020710	AsnC-type helix-turn-helix domain; Region: HTH_AsnC-type; pfam13404
216591020711	putative DNA binding site [nucleotide binding]; other site
216591020712	putative Zn2+ binding site [ion binding]; other site
216591020713	AsnC family; Region: AsnC_trans_reg; pfam01037
216591020714	HMMPfam hit to PF01037, AsnC family, score 3.9e-17
216591020715	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
216591020716	uncharacterized peroxidase-related enzyme; Region: peroxid_rel; TIGR01926
216591020717	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 3.4e-16
216591020718	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4950; cl17731
216591020719	Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]; Region: TrkA; COG2072
216591020720	FAD-NAD(P)-binding; Region: NAD_binding_9; pfam13454
216591020721	hydroxyglutarate oxidase; Provisional; Region: PRK11728
216591020722	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0015
216591020723	HMMPfam hit to PF01494, FAD binding domain, score 0.0052
216591020724	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591020725	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020726	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591020727	dimerization interface [polypeptide binding]; other site
216591020728	HMMPfam hit to PF03466, LysR substrate binding domain, score 8e-30
216591020729	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.8e-19
216591020730	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020731	Predicted helix-turn-helix motif with score 1156.000, SD 3.12 at aa 16-37, sequence GSVTGAGELLGRSQPAVTRQIQ
216591020732	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591020733	Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems; Region: PBP1_ABC_ligand_binding_like_14; cd06349
216591020734	putative ligand binding site [chemical binding]; other site
216591020735	HMMPfam hit to PF01094, Receptor family ligand binding region, score 1.3e-28
216591020736	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591020737	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591020738	TM-ABC transporter signature motif; other site
216591020739	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
216591020740	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591020741	TM-ABC transporter signature motif; other site
216591020742	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 9.5e-47
216591020743	15 probable transmembrane helices predicted for BCAM0611 by TMHMM2.0 at aa 13-35, 58-80, 93-115, 138-160, 193-215, 230-252, 257-279, 312-334, 341-363, 387-409, 416-438, 458-480, 509-531, 546-568 and 573-595
216591020744	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020745	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 9.2e-37
216591020746	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
216591020747	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591020748	Walker A/P-loop; other site
216591020749	ATP binding site [chemical binding]; other site
216591020750	Q-loop/lid; other site
216591020751	ABC transporter signature motif; other site
216591020752	Walker B; other site
216591020753	D-loop; other site
216591020754	H-loop/switch region; other site
216591020755	HMMPfam hit to PF00005, ABC transporter score 4.8e-53
216591020756	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020757	PS00063 Aldo/keto reductase family putative active site signature.
216591020758	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
216591020759	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591020760	Walker A/P-loop; other site
216591020761	ATP binding site [chemical binding]; other site
216591020762	Q-loop/lid; other site
216591020763	ABC transporter signature motif; other site
216591020764	Walker B; other site
216591020765	D-loop; other site
216591020766	H-loop/switch region; other site
216591020767	HMMPfam hit to PF00005, ABC transporter score 3.2e-42
216591020768	PS00017 ATP/GTP-binding site motif A (P-loop).
216591020769	PS00211 ABC transporters family signature.
216591020770	DinB family; Region: DinB; cl17821
216591020771	DinB superfamily; Region: DinB_2; pfam12867
216591020772	HMMPfam hit to PF05163, DinB family, score 2.3e-06
216591020773	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591020774	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591020775	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 6.2e-15
216591020776	Predicted helix-turn-helix motif with score 1594.000, SD 4.62 at aa 44-65, sequence FTTNEVAQVAGVSIGSVYQYFP
216591020777	Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521
216591020778	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591020779	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain; Region: HAMP; smart00304
216591020780	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591020781	dimer interface [polypeptide binding]; other site
216591020782	phosphorylation site [posttranslational modification]
216591020783	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591020784	ATP binding site [chemical binding]; other site
216591020785	Mg2+ binding site [ion binding]; other site
216591020786	G-X-G motif; other site
216591020787	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.4e-28
216591020788	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 4e-06
216591020789	HMMPfam hit to PF00672, HAMP domain, score 2.2e-06
216591020790	2 probable transmembrane helices predicted for BCAM0617 by TMHMM2.0 at aa 15-37 and 166-188
216591020791	HMMPfam hit to PF08521, Two-component sensor kinase N-terminal, score 4.1e-31
216591020792	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591020793	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591020794	active site
216591020795	phosphorylation site [posttranslational modification]
216591020796	intermolecular recognition site; other site
216591020797	dimerization interface [polypeptide binding]; other site
216591020798	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591020799	DNA binding site [nucleotide binding]
216591020800	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1.6e-18
216591020801	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.5e-35
216591020802	NMT1-like family; Region: NMT1_2; pfam13379
216591020803	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
216591020804	1 probable transmembrane helix predicted for BCAM0619 by TMHMM2.0 at aa 21-40
216591020805	PS00093 N-4 cytosine-specific DNA methylases signature.
216591020806	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020807	D-galactonate transporter; Region: 2A0114; TIGR00893
216591020808	putative substrate translocation pore; other site
216591020809	12 probable transmembrane helices predicted for BCAM0620 by TMHMM2.0 at aa 21-38, 53-75, 88-110, 120-142, 149-171, 181-203, 249-271, 286-304, 311-333, 338-360, 365-387 and 402-424
216591020810	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.3e-46
216591020811	Histidine kinase; Region: HisKA_3; pfam07730
216591020812	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.2e-15
216591020813	HMMPfam hit to PF07730, Histidine kinase, score 1.8e-13
216591020814	8 probable transmembrane helices predicted for BCAM0622 by TMHMM2.0 at aa 40-62, 72-94, 99-121, 141-163, 176-198, 213-232, 244-266 and 276-298
216591020815	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591020816	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591020817	active site
216591020818	phosphorylation site [posttranslational modification]
216591020819	intermolecular recognition site; other site
216591020820	dimerization interface [polypeptide binding]; other site
216591020821	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591020822	DNA binding residues [nucleotide binding]
216591020823	dimerization interface [polypeptide binding]; other site
216591020824	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 3.1e-18
216591020825	PS00622 Bacterial regulatory proteins, luxR family signature.
216591020826	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.2e-31
216591020827	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
216591020828	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cl00474
216591020829	active site
216591020830	LssY C-terminus; Region: LssY_C; pfam14067
216591020831	12 probable transmembrane helices predicted for BCAM0625 by TMHMM2.0 at aa 5-27, 32-54, 59-81, 143-165, 175-197, 240-262, 296-318, 325-347, 362-384, 391-413, 417-439 and 452-471
216591020832	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020833	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020834	Predicted transcriptional regulator [Transcription]; Region: COG3636; cl17681
216591020835	Predicted helix-turn-helix motif with score 1409.000, SD 3.99 at aa 57-78, sequence GGLGAVAAEAGISRESLYRTLS
216591020836	putative addiction module killer protein; Region: upstrm_HI1419; TIGR02683
216591020837	HMMPfam hit to PF05973, Phage derived protein Gp49-like (DUF891), score 4.3e-17
216591020838	Low molecular weight phosphatase family; Region: LMWPc; cd00115
216591020839	Low molecular weight phosphotyrosine protein phosphatase; Region: LMWPc; pfam01451
216591020840	active site
216591020841	HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein, score 6.4e-29
216591020842	Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]; Region: TrkA; COG2072
216591020843	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox_3; pfam13738
216591020844	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591020845	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 7.2e-60
216591020846	PS01174 Lipolytic enzymes G-D-X-G family, putative serine active site.
216591020847	1 probable transmembrane helix predicted for BCAM0629 by TMHMM2.0 at aa 12-34
216591020848	choline dehydrogenase; Validated; Region: PRK02106
216591020849	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591020850	HMMPfam hit to PF05199, GMC oxidoreductase, score 2.1e-62
216591020851	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0015
216591020852	HMMPfam hit to PF00732, GMC oxidoreductase, score 1.2e-113
216591020853	PS00624 GMC oxidoreductases signature 2.
216591020854	PS00623 GMC oxidoreductases signature 1.
216591020855	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020856	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591020857	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591020858	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591020859	Predicted helix-turn-helix motif with score 1809.000, SD 5.35 at aa 252-273, sequence FSLEDMARLMNTSPRTLKRRLQ
216591020860	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 4.4e-10
216591020861	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
216591020862	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591020863	Coenzyme A binding pocket [chemical binding]; other site
216591020864	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 7.2e-13
216591020865	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591020866	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591020867	putative DNA binding site [nucleotide binding]; other site
216591020868	putative Zn2+ binding site [ion binding]; other site
216591020869	AsnC family; Region: AsnC_trans_reg; pfam01037
216591020870	HMMPfam hit to PF01037, AsnC family, score 5.7e-19
216591020871	PS00519 Bacterial regulatory proteins, asnC family signature.
216591020872	Predicted helix-turn-helix motif with score 1219.000, SD 3.34 at aa 23-44, sequence TPLSEVGRRIGLSQPATSERVK
216591020873	Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]; Region: COG3545
216591020874	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591020875	HMMPfam hit to PF06821, Alpha/Beta hydrolase family of unknown funct, score 6.6e-58
216591020876	12 probable transmembrane helices predicted for BCAM0637 by TMHMM2.0 at aa 30-52, 67-89, 94-116, 126-148, 155-177, 187-209, 237-259, 269-291, 303-321, 326-348, 360-382 and 386-408
216591020877	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.9e-29
216591020878	HMMPfam hit to PF06779, Protein of unknown function (DUF1228), score 1.1e-18
216591020879	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020880	Flavin Reductases; Region: FlaRed; cl00801
216591020881	HMMPfam hit to PF01613, Flavin reductase like domain, score 1.3e-43
216591020882	Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566
216591020883	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591020884	active site
216591020885	phosphorylation site [posttranslational modification]
216591020886	intermolecular recognition site; other site
216591020887	dimerization interface [polypeptide binding]; other site
216591020888	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591020889	DNA binding residues [nucleotide binding]
216591020890	dimerization interface [polypeptide binding]; other site
216591020891	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.5e-27
216591020892	HMMPfam hit to PF08281, Sigma-70, region, score 6.7e-08
216591020893	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 9.7e-21
216591020894	PS00622 Bacterial regulatory proteins, luxR family signature.
216591020895	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
216591020896	classical (c) SDRs; Region: SDR_c; cd05233
216591020897	NAD(P) binding site [chemical binding]; other site
216591020898	active site
216591020899	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.5e-20
216591020900	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591020901	PS00061 Short-chain dehydrogenases/reductases family signature.
216591020902	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154
216591020903	Amidase; Region: Amidase; cl11426
216591020904	HMMPfam hit to PF01425, Amidase, score 4.9e-60
216591020905	PS00571 Amidases signature.
216591020906	SnoaL-like domain; Region: SnoaL_4; pfam13577
216591020907	PS00513 Adenylosuccinate synthetase active site.
216591020908	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591020909	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591020910	active site
216591020911	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 1.7e-27
216591020912	PAS domain; Region: PAS_9; pfam13426
216591020913	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
216591020914	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591020915	putative active site [active]
216591020916	heme pocket [chemical binding]; other site
216591020917	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591020918	dimer interface [polypeptide binding]; other site
216591020919	phosphorylation site [posttranslational modification]
216591020920	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591020921	ATP binding site [chemical binding]; other site
216591020922	Mg2+ binding site [ion binding]; other site
216591020923	G-X-G motif; other site
216591020924	HMMPfam hit to PF00989, PAS fold, score 0.074
216591020925	HMMPfam hit to PF00989, PAS fold, score 9.2e-05
216591020926	HMMPfam hit to PF08447, PAS fold, score 0.0016
216591020927	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 0.00085
216591020928	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 4.4e-20
216591020929	4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cl00235
216591020930	active site 1 [active]
216591020931	dimer interface [polypeptide binding]; other site
216591020932	hexamer interface [polypeptide binding]; other site
216591020933	active site 2 [active]
216591020934	4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cl00235
216591020935	active site 1 [active]
216591020936	dimer interface [polypeptide binding]; other site
216591020937	hexamer interface [polypeptide binding]; other site
216591020938	active site 2 [active]
216591020939	HMMPfam hit to PF01361, Tautomerase enzyme, score 1.1e-12
216591020940	HMMPfam hit to PF01361, Tautomerase enzyme, score 8.5e-15
216591020941	Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109
216591020942	HMMPfam hit to PF00866, Ring hydroxylating beta subunit, score 2.4e-18
216591020943	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
216591020944	Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469
216591020945	[2Fe-2S] cluster binding site [ion binding]; other site
216591020946	C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_AntDO-like; cd08879
216591020947	putative alpha subunit interface [polypeptide binding]; other site
216591020948	putative active site [active]
216591020949	putative substrate binding site [chemical binding]; other site
216591020950	Fe binding site [ion binding]; other site
216591020951	HMMPfam hit to PF00848, Ring hydroxylating alpha subunit (cat, score 3.2e-11
216591020952	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 2.9e-34
216591020953	PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature.
216591020954	leucine transcriptional activator; Reviewed; Region: leuO; PRK09508
216591020955	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020956	The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_NahR_LinR_like; cd08459
216591020957	substrate binding pocket [chemical binding]; other site
216591020958	dimerization interface [polypeptide binding]; other site
216591020959	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.2e-21
216591020960	Predicted helix-turn-helix motif with score 1349.000, SD 3.78 at aa 27-48, sequence RSLTKAGERLALSQPAVSYSLG
216591020961	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020962	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.4e-21
216591020963	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
216591020964	Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal  ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur; Region: PDR_like; cd06185
216591020965	FMN-binding pocket [chemical binding]; other site
216591020966	flavin binding motif; other site
216591020967	phosphate binding motif [ion binding]; other site
216591020968	beta-alpha-beta structure motif; other site
216591020969	NAD binding pocket [chemical binding]; other site
216591020970	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591020971	catalytic loop [active]
216591020972	iron binding site [ion binding]; other site
216591020973	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 1.2e-17
216591020974	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591020975	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 8.7e-06
216591020976	1 probable transmembrane helix predicted for BCAM0650 by TMHMM2.0 at aa 112-131
216591020977	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 1.9e-06
216591020978	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591020979	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591020980	putative substrate translocation pore; other site
216591020981	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020982	12 probable transmembrane helices predicted for BCAM0651 by TMHMM2.0 at aa 20-42, 57-79, 86-108, 112-134, 146-168, 188-210, 249-271, 281-303, 315-337, 342-364, 377-399 and 414-433
216591020983	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.8e-49
216591020984	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020985	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591020986	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591020987	trimer interface [polypeptide binding]; other site
216591020988	eyelet of channel; other site
216591020989	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591020990	1 probable transmembrane helix predicted for BCAM0652 by TMHMM2.0 at aa 13-35
216591020991	HMMPfam hit to PF00267, Gram-negative porin, score 0.00026
216591020992	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591020993	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591020994	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591020995	dimerization interface [polypeptide binding]; other site
216591020996	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-15
216591020997	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-20
216591020998	PS00044 Bacterial regulatory proteins, lysR family signature.
216591020999	Predicted helix-turn-helix motif with score 1305.000, SD 3.63 at aa 48-69, sequence RHVGRAALRLGVTQPSVSYALG
216591021000	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591021001	PS00041 Bacterial regulatory proteins, araC family signature.
216591021002	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00091
216591021003	Predicted helix-turn-helix motif with score 1233.000, SD 3.39 at aa 235-256, sequence LALAALAAVAGVAPRTLQHAFR
216591021004	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
216591021005	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain; Region: Octopine_DH; pfam02317
216591021006	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 3.8e-05
216591021007	HMMPfam hit to PF02317, NAD/NADP octopine/nopaline dehydrogena, score 7.4e-62
216591021008	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
216591021009	3-hydroxybutyryl-CoA dehydrogenase; Validated; Region: PRK08269
216591021010	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591021011	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, score 2.4e-51
216591021012	1 probable transmembrane helix predicted for BCAM0656 by TMHMM2.0 at aa 7-29
216591021013	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 1.3e-19
216591021014	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591021015	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591021016	putative substrate translocation pore; other site
216591021017	HMMPfam hit to PF00083, Sugar (and other) transporter score 4.3e-19
216591021018	12 probable transmembrane helices predicted for BCAM0657 by TMHMM2.0 at aa 40-57, 67-86, 99-121, 131-153, 165-187, 197-217, 255-277, 287-309, 316-335, 345-367, 380-402 and 407-429
216591021019	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.5e-22
216591021020	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021021	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591021022	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021023	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591021024	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.7e-30
216591021025	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021026	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.5e-24
216591021027	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021028	Predicted helix-turn-helix motif with score 1775.000, SD 5.23 at aa 16-37, sequence GSIGKAADALGLSQPALTKAVQ
216591021029	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187
216591021030	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591021031	Bacterial Bile acid CoA ligases and similar proteins; Region: BACL_like; cd05929
216591021032	acyl-activating enzyme (AAE) consensus motif; other site
216591021033	putative AMP binding site [chemical binding]; other site
216591021034	putative active site [active]
216591021035	putative CoA binding site [chemical binding]; other site
216591021036	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.3e-113
216591021037	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591021038	PS00455 Putative AMP-binding domain signature.
216591021039	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591021040	Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771
216591021041	Acyl-CoA dehydrogenase; Region: ACAD; cd00567
216591021042	active site
216591021043	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 5.5e-26
216591021044	PS00072 Acyl-CoA dehydrogenases signature 1.
216591021045	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 4.4e-53
216591021046	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 1.4e-13
216591021047	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591021048	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591021049	HMMPfam hit to PF02515, CoA-transferase family III, score 1.1e-41
216591021050	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591021051	D-galactonate transporter; Region: 2A0114; TIGR00893
216591021052	putative substrate translocation pore; other site
216591021053	11 probable transmembrane helices predicted for BCAM0662 by TMHMM2.0 at aa 15-37, 50-72, 82-104, 140-162, 167-189, 216-238, 253-275, 288-308, 318-340, 352-374 and 384-406
216591021054	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1e-45
216591021055	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021056	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021057	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591021058	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591021059	trimer interface [polypeptide binding]; other site
216591021060	eyelet of channel; other site
216591021061	HMMPfam hit to PF00267, Gram-negative porin, score 0.00051
216591021062	BON domain; Region: BON; pfam04972
216591021063	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 1e-09
216591021064	Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680
216591021065	Beta-lactamase; Region: Beta-lactamase; pfam00144
216591021066	1 probable transmembrane helix predicted for BCAM0665 by TMHMM2.0 at aa 13-35
216591021067	HMMPfam hit to PF00144, Beta-lactamase, score 2.5e-18
216591021068	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
216591021069	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
216591021070	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 6.1e-14
216591021071	C-terminus matches Burkholderia cenocepacia HI2424 transposase, is605 orfb. UniProt:Q4LL61 (EMBL:AAHL01000053) (350 aa) fasta scores: E()=2.7e-25, 75.758% id in 99 aa; N terminus matches Burkholderia cenocepacia HI2424 transposase, is605 orfb. UniProt:Q4LL61 (EMBL:AAHL01000053) (350 aa) fasta scores: E()=2.7e-25, 75.758% id in 99 aa, and to Burkholderia cenocepacia HI2424 transposase, is605 orfb. UniProt:Q4LSK6 (EMBL:AAHL01000020) (194 aa) fasta scores: E()=3.1e-28, 54.268% id in 164 aa; Contains nonsense codon after codon 85, and frameshift after codon 146
216591021072	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591021073	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 5.3e-88
216591021074	1 probable transmembrane helix predicted for BCAM0667 by TMHMM2.0 at aa 7-26
216591021075	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox_2; pfam07992
216591021076	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591021077	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; pfam04324
216591021078	HMMPfam hit to PF04324, BFD-like [2Fe-2S] binding domain, score 3.3e-18
216591021079	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 8.4e-11
216591021080	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_4; pfam13510
216591021081	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
216591021082	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591021083	dimer interface [polypeptide binding]; other site
216591021084	conserved gate region; other site
216591021085	putative PBP binding loops; other site
216591021086	ABC-ATPase subunit interface; other site
216591021087	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1e-09
216591021088	6 probable transmembrane helices predicted for BCAM0670 by TMHMM2.0 at aa 7-29, 68-90, 97-119, 134-156, 177-199 and 228-250
216591021089	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591021090	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
216591021091	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591021092	dimer interface [polypeptide binding]; other site
216591021093	conserved gate region; other site
216591021094	putative PBP binding loops; other site
216591021095	ABC-ATPase subunit interface; other site
216591021096	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.4e-11
216591021097	6 probable transmembrane helices predicted for BCAM0671 by TMHMM2.0 at aa 24-46, 87-109, 116-138, 165-187, 223-245 and 267-289
216591021098	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
216591021099	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591021100	Walker A/P-loop; other site
216591021101	ATP binding site [chemical binding]; other site
216591021102	Q-loop/lid; other site
216591021103	ABC transporter signature motif; other site
216591021104	Walker B; other site
216591021105	D-loop; other site
216591021106	H-loop/switch region; other site
216591021107	TOBE domain; Region: TOBE_2; pfam08402
216591021108	HMMPfam hit to PF08402, TOBE domain, score 4.2e-18
216591021109	HMMPfam hit to PF03459, TOBE domain, score 0.00089
216591021110	HMMPfam hit to PF03459, TOBE domain, score 6e-05
216591021111	HMMPfam hit to PF00005, ABC transporter score 1.7e-66
216591021112	PS00211 ABC transporters family signature.
216591021113	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021114	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591021115	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591021116	putative DNA binding site [nucleotide binding]; other site
216591021117	putative Zn2+ binding site [ion binding]; other site
216591021118	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591021119	Predicted helix-turn-helix motif with score 1612.000, SD 4.68 at aa 58-79, sequence VRVTHLAKAVGLTQGTAHRILQ
216591021120	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 2.1e-07
216591021121	short chain dehydrogenase; Provisional; Region: PRK06500
216591021122	classical (c) SDRs; Region: SDR_c; cd05233
216591021123	NAD(P) binding site [chemical binding]; other site
216591021124	active site
216591021125	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.2e-19
216591021126	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0021
216591021127	Putative intracellular protease/amidase [General function prediction only]; Region: ThiJ; COG0693
216591021128	Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Region: GATase1_PfpI_2; cd03139
216591021129	conserved cys residue [active]
216591021130	HMMPfam hit to PF01965, DJ-1/PfpI family, score 1.7e-10
216591021131	Ketosteroid isomerase homolog [Function unknown]; Region: COG4319
216591021132	SnoaL-like domain; Region: SnoaL_3; pfam13474
216591021133	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021134	1 probable transmembrane helix predicted for BCAM0676 by TMHMM2.0 at aa 7-29
216591021135	HMMPfam hit to PF02136, Nuclear transport factor 2 (NTF2) domain, score 0.0057
216591021136	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591021137	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591021138	conserved cys residue [active]
216591021139	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591021140	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 0.0013
216591021141	Predicted helix-turn-helix motif with score 1105.000, SD 2.95 at aa 225-246, sequence LPVERLADAASLSVRQFGRAFR
216591021142	HMMPfam hit to PF01965, DJ-1/PfpI family, score 8.4e-10
216591021143	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591021144	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.3e-15
216591021145	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591021146	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591021147	salt bridge; other site
216591021148	non-specific DNA binding site [nucleotide binding]; other site
216591021149	sequence-specific DNA binding site [nucleotide binding]; other site
216591021150	Predicted helix-turn-helix motif with score 1409.000, SD 3.99 at aa 37-58, sequence LRREEVAQRAHVSVAWYTWLEQ
216591021151	atypical (a) SDRs, subgroup 7; Region: SDR_a7; cd05262
216591021152	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591021153	putative NAD(P) binding site [chemical binding]; other site
216591021154	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 2.1e-06
216591021155	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 9.4e-07
216591021156	HMMPfam hit to PF07993, Male sterility protein, score 0.0023
216591021157	Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR2; cd08268
216591021158	NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604
216591021159	putative NAD(P) binding site [chemical binding]; other site
216591021160	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.2e-24
216591021161	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 5.7e-18
216591021162	transcriptional regulator; Provisional; Region: PRK10632
216591021163	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021164	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
216591021165	putative effector binding pocket; other site
216591021166	putative dimerization interface [polypeptide binding]; other site
216591021167	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.7e-40
216591021168	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.7e-17
216591021169	Predicted helix-turn-helix motif with score 1360.000, SD 3.82 at aa 17-38, sequence GNFTQAADALQLHRPAVTKAVQ
216591021170	mercuric reductase; Validated; Region: PRK06370
216591021171	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591021172	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
216591021173	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 1e-26
216591021174	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 2e-45
216591021175	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 9.9e-27
216591021176	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.
216591021177	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
216591021178	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591021179	Coenzyme A binding pocket [chemical binding]; other site
216591021180	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 9.6e-19
216591021181	LysE type translocator; Region: LysE; cl00565
216591021182	4 probable transmembrane helices predicted for BCAM0687 by TMHMM2.0 at aa 7-29, 44-66, 73-95 and 151-173
216591021183	HMMPfam hit to PF01810, LysE type translocator, score 2.5e-31
216591021184	Protein of unknown function (DUF3348); Region: DUF3348; pfam11828
216591021185	Domain of unknown function (DUF802); Region: DUF802; pfam05650
216591021186	Domain of unknown function (DUF802); Region: DUF802; pfam05650
216591021187	3 probable transmembrane helices predicted for BCAM0689 by TMHMM2.0 at aa 7-26, 31-53 and 107-129
216591021188	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021189	HMMPfam hit to PF05650, Domain of unknown function (DUF802), score 1.3e-16
216591021190	HMMPfam hit to PF05650, Domain of unknown function (DUF802), score 3.1e-11
216591021191	hypothetical protein; Provisional; Region: PRK09040
216591021192	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591021193	ligand binding site [chemical binding]; other site
216591021194	1 probable transmembrane helix predicted for BCAM0690 by TMHMM2.0 at aa 15-37
216591021195	HMMPfam hit to PF00691, OmpA family, score 8.5e-19
216591021196	Protein of unknown function (DUF2894); Region: DUF2894; pfam11445
216591021197	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591021198	Predicted flavoprotein [General function prediction only]; Region: COG0431
216591021199	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 5.3e-20
216591021200	8 probable transmembrane helices predicted for BCAM0694 by TMHMM2.0 at aa 21-38, 51-73, 93-115, 125-147, 222-244, 259-281, 301-323 and 364-386
216591021201	HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 1.5e-05
216591021202	HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 1.5e-05
216591021203	HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 1.5e-05
216591021204	HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 7.2e-06
216591021205	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021206	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
216591021207	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 3.6e-25
216591021208	Novel bacterial esterase that cleaves esters on halogenated cyclic compounds; Region: Esterase_713_like; cl17303
216591021209	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591021210	catalytic site [active]
216591021211	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.7e-15
216591021212	1 probable transmembrane helix predicted for BCAM0697 by TMHMM2.0 at aa 7-29
216591021213	Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]; Region: TrkA; COG2072
216591021214	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox_3; pfam13738
216591021215	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00034
216591021216	glucose-1-dehydrogenase; Provisional; Region: PRK06947
216591021217	classical (c) SDRs; Region: SDR_c; cd05233
216591021218	NAD(P) binding site [chemical binding]; other site
216591021219	active site
216591021220	HMMPfam hit to PF00106, short chain dehydrogenase, score 7.7e-23
216591021221	PS00061 Short-chain dehydrogenases/reductases family signature.
216591021222	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591021223	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591021224	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 5.8e-06
216591021225	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021226	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591021227	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021228	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591021229	putative effector binding pocket; other site
216591021230	dimerization interface [polypeptide binding]; other site
216591021231	HMMPfam hit to PF03466, LysR substrate binding domain, score 4e-47
216591021232	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021233	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.1e-18
216591021234	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021235	Predicted helix-turn-helix motif with score 1221.000, SD 3.35 at aa 22-43, sequence GSLTAAAERLGLAKTVVSTHMQ
216591021236	GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_N_4; cd03056
216591021237	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591021238	putative C-terminal domain interface [polypeptide binding]; other site
216591021239	putative GSH binding site (G-site) [chemical binding]; other site
216591021240	putative dimer interface [polypeptide binding]; other site
216591021241	C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases; Region: GST_C_7; cd03206
216591021242	putative N-terminal domain interface [polypeptide binding]; other site
216591021243	putative dimer interface [polypeptide binding]; other site
216591021244	putative substrate binding pocket (H-site) [chemical binding]; other site
216591021245	Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381
216591021246	Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381
216591021247	FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The...; Region: flavohem_like_fad_nad_binding; cd06184
216591021248	phenylacetate-CoA oxygenase/reductase, PaaK subunit; Region: PA_CoA_Oxy5; TIGR02160
216591021249	FAD binding pocket [chemical binding]; other site
216591021250	FAD binding motif [chemical binding]; other site
216591021251	phosphate binding motif [ion binding]; other site
216591021252	beta-alpha-beta structure motif; other site
216591021253	NAD binding pocket [chemical binding]; other site
216591021254	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591021255	catalytic loop [active]
216591021256	iron binding site [ion binding]; other site
216591021257	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591021258	Protein of unknown function (DUF2970); Region: DUF2970; pfam11174
216591021259	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021260	1 probable transmembrane helix predicted for BCAM0705 by TMHMM2.0 at aa 32-54
216591021261	CDS contains a frameshift after codon 66. Similar to Burkholderia cenocepacia TonB-dependent siderophore receptor precursor UniProt:Q1BLD6 (EMBL:CP000379 (743 aa) fasta scores: E()=0, 97.443% id in 743 aa
216591021262	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 1.1e-08
216591021263	HMMPfam hit to PF00593, TonB dependent receptor, score 8.4e-27
216591021264	PS01156 TonB-dependent receptor proteins signature 2.
216591021265	Nicotinamide mononucleotide transporter; Region: NMN_transporter; pfam04973
216591021266	HMMPfam hit to PF04973, Nicotinamide mononucleotide transport, score 1.5e-18
216591021267	5 probable transmembrane helices predicted for BCAM0707 by TMHMM2.0 at aa 4-18, 25-42, 120-139, 144-163 and 167-186
216591021268	Phosphotransferase enzyme family; Region: APH; pfam01636
216591021269	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cl17270
216591021270	active site
216591021271	ATP binding site [chemical binding]; other site
216591021272	substrate binding site [chemical binding]; other site
216591021273	HMMPfam hit to PF01636, Phosphotransferase enzyme family, score 8.4e-18
216591021274	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cl02931
216591021275	Peptidase M35 family; Region: M35_like; cd11005
216591021276	active site
216591021277	Zn binding site [ion binding]; other site
216591021278	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591021279	type I secretion outer membrane protein, TolC family; Region: type_I_sec_TolC; TIGR01844
216591021280	PS00216 Sugar transport proteins signature 1.
216591021281	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591021282	Membrane Fusion Protein cluster 2 (function with RND porters); Region: 8a0102; TIGR00999
216591021283	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591021284	1 probable transmembrane helix predicted for BCAM0712 by TMHMM2.0 at aa 7-26
216591021285	heavy metal efflux pump, CzcA family; Region: 2A0601; TIGR00914
216591021286	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591021287	11 probable transmembrane helices predicted for BCAM0713 by TMHMM2.0 at aa 10-29, 353-375, 395-414, 451-470, 485-507, 540-559, 889-906, 913-935, 939-961, 985-1007 and 1017-1039
216591021288	heavy metal response regulator; Region: cztR_silR_copR; TIGR01387
216591021289	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591021290	active site
216591021291	phosphorylation site [posttranslational modification]
216591021292	intermolecular recognition site; other site
216591021293	dimerization interface [polypeptide binding]; other site
216591021294	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591021295	DNA binding site [nucleotide binding]
216591021296	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.3e-37
216591021297	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.9e-23
216591021298	heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386
216591021299	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591021300	dimerization interface [polypeptide binding]; other site
216591021301	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591021302	dimer interface [polypeptide binding]; other site
216591021303	phosphorylation site [posttranslational modification]
216591021304	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591021305	ATP binding site [chemical binding]; other site
216591021306	Mg2+ binding site [ion binding]; other site
216591021307	G-X-G motif; other site
216591021308	2 probable transmembrane helices predicted for BCAM0715 by TMHMM2.0 at aa 15-37 and 168-190
216591021309	HMMPfam hit to PF00672, HAMP domain, score 7.8e-12
216591021310	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 8.6e-18
216591021311	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 7e-42
216591021312	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591021313	1 probable transmembrane helix predicted for BCAM0716 by TMHMM2.0 at aa 7-26
216591021314	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591021315	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591021316	trimer interface [polypeptide binding]; other site
216591021317	eyelet of channel; other site
216591021318	HMMPfam hit to PF00267, Gram-negative porin, score 1.5e-06
216591021319	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591021320	1 probable transmembrane helix predicted for BCAM0719 by TMHMM2.0 at aa 7-24
216591021321	8 probable transmembrane helices predicted for BCAM0720 by TMHMM2.0 at aa 7-27, 37-56, 61-83, 98-120, 127-149, 153-175, 182-204 and 219-238
216591021322	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021323	O-acetylhomoserine aminocarboxypropyltransferase; Validated; Region: PRK06084
216591021324	CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614
216591021325	homodimer interface [polypeptide binding]; other site
216591021326	substrate-cofactor binding pocket; other site
216591021327	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591021328	catalytic residue [active]
216591021329	Methyltransferase domain; Region: Methyltransf_31; pfam13847
216591021330	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591021331	S-adenosylmethionine binding site [chemical binding]; other site
216591021332	HMMPfam hit to PF01596, O-methyltransferase, score 7.1e-18
216591021333	PS00213 Lipocalin signature.
216591021334	1 probable transmembrane helix predicted for BCAM0723 by TMHMM2.0 at aa 21-43
216591021335	Protein of unknown function (DUF1176); Region: DUF1176; pfam06674
216591021336	HMMPfam hit to PF06674, Protein of unknown function (DUF1176), score 1e-10
216591021337	Predicted nucleotidyltransferase; Region: Nuc-transf; pfam10127
216591021338	Uncharacterized protein family UPF0027; Region: UPF0027; pfam01139
216591021339	hypothetical protein; Reviewed; Region: PRK09588
216591021340	HMMPfam hit to PF01139, Uncharacterized protein family UPF0027, score 4.1e-187
216591021341	PS01288 Uncharacterized protein family UPF0027 signature.
216591021342	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
216591021343	Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form...; Region: Band_7_stomatin_like; cd03403
216591021344	HMMPfam hit to PF01145, SPFH domain / Band, score 2.2e-16
216591021345	Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]; Region: RtcR; COG4650
216591021346	Regulator of RNA terminal phosphate cyclase; Region: RtcR; pfam06956
216591021347	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591021348	Walker A motif; other site
216591021349	ATP binding site [chemical binding]; other site
216591021350	Walker B motif; other site
216591021351	arginine finger; other site
216591021352	HMMPfam hit to PF06956, Regulator of RNA terminal phosphate c, score 7.4e-109
216591021353	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3.2e-59
216591021354	HMMPfam hit to PF07728, ATPase family associated with various, score 7.4e-05
216591021355	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021356	SUKH-3 immunity protein; Region: SUKH-3; pfam14433
216591021357	SnoaL-like domain; Region: SnoaL_4; cl17707
216591021358	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591021359	MarR family; Region: MarR_2; pfam12802
216591021360	HMMPfam hit to PF01047, MarR family, score 0.00022
216591021361	cysteine desulfurase; Provisional; Region: PRK14012
216591021362	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
216591021363	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591021364	catalytic residue [active]
216591021365	HMMPfam hit to PF00266, Aminotransferase class-V, score 8.2e-123
216591021366	HMMPfam hit to PF01212, Beta-eliminating lyase, score 1.8e-06
216591021367	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.
216591021368	Flavin reductase like domain; Region: Flavin_Reduct; smart00903
216591021369	HMMPfam hit to PF01613, Flavin reductase like domain, score 1.5e-39
216591021370	4-hydroxyphenylacetate 3-hydroxylase N terminal; Region: HpaB_N; pfam11794
216591021371	4-hydroxyphenylacetate 3-hydroxylase C terminal; Region: HpaB; pfam03241
216591021372	HMMPfam hit to PF03241, 4-hydroxyphenylacetate 3-hydroxylase family, score 2.5e-93
216591021373	Protein of unknown function (DUF2848); Region: DUF2848; pfam11010
216591021374	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591021375	S-adenosylmethionine binding site [chemical binding]; other site
216591021376	HMMPfam hit to PF08241, Methyltransferase domain, score 3.3e-18
216591021377	HMMPfam hit to PF08242, Methyltransferase domain, score 9.3e-25
216591021378	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591021379	HMMPfam hit to PF01810, LysE type translocator, score 1.6e-31
216591021380	5 probable transmembrane helices predicted for BCAM0738 by TMHMM2.0 at aa 7-29, 44-66, 71-93, 149-171 and 183-205
216591021381	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021382	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591021383	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591021384	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591021385	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591021386	PS00228 Tubulin-beta mRNA autoregulation signal.
216591021387	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 1.9e-07
216591021388	HMMPfam hit to PF07883, Cupin domain, score 0.00035
216591021389	PS00041 Bacterial regulatory proteins, araC family signature.
216591021390	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 0.00069
216591021391	Predicted helix-turn-helix motif with score 1175.000, SD 3.19 at aa 180-201, sequence SPLPELARRAGISERSLTRLAT
216591021392	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 3.7e-06
216591021393	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591021394	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021395	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
216591021396	putative effector binding pocket; other site
216591021397	putative dimerization interface [polypeptide binding]; other site
216591021398	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.8e-18
216591021399	Predicted helix-turn-helix motif with score 1419.000, SD 4.02 at aa 18-39, sequence NSFTRAAQALGISRATATRTVQ
216591021400	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021401	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.9e-27
216591021402	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021403	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479
216591021404	putative effector binding pocket; other site
216591021405	putative dimerization interface [polypeptide binding]; other site
216591021406	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-47
216591021407	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.4e-17
216591021408	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021409	Predicted helix-turn-helix motif with score 1506.000, SD 4.32 at aa 20-41, sequence GSLSAAARELGLTAAAVSKRLT
216591021410	Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]; Region: LeuB; COG0473
216591021411	tartrate dehydrogenase; Region: TTC; TIGR02089
216591021412	HMMPfam hit to PF00180, Isocitrate/isopropylmalate dehydrogenase, score 1.9e-91
216591021413	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591021414	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591021415	putative substrate translocation pore; other site
216591021416	12 probable transmembrane helices predicted for BCAM0744 by TMHMM2.0 at aa 13-30, 45-67, 87-109, 114-133, 140-162, 172-194, 244-266, 276-298, 310-327, 331-353, 360-382 and 397-419
216591021417	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.4e-46
216591021418	Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cl17190
216591021419	active site
216591021420	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021421	argininosuccinate synthase; Validated; Region: PRK05370
216591021422	argininosuccinate synthase; Provisional; Region: PRK13820
216591021423	HMMPfam hit to PF00764, Arginosuccinate synthase, score 7.5e-183
216591021424	PS00565 Argininosuccinate synthase signature 2.
216591021425	PS00564 Argininosuccinate synthase signature 1.
216591021426	Predicted membrane protein [Function unknown]; Region: COG1289
216591021427	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591021428	4 probable transmembrane helices predicted for BCAM0747 by TMHMM2.0 at aa 33-55, 92-114, 121-143 and 158-180
216591021429	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021430	Cache domain; Region: Cache_1; pfam02743
216591021431	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591021432	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591021433	metal binding site [ion binding]; metal-binding site
216591021434	active site
216591021435	I-site; other site
216591021436	HMMPfam hit to PF00990, GGDEF domain, score 8.3e-67
216591021437	2 probable transmembrane helices predicted for BCAM0748 by TMHMM2.0 at aa 21-43 and 301-323
216591021438	lysine transporter; Provisional; Region: PRK10836
216591021439	HMMPfam hit to PF00324, Amino acid permease, score 2.1e-174
216591021440	12 probable transmembrane helices predicted for BCAM0749 by TMHMM2.0 at aa 27-49, 59-81, 109-131, 136-158, 165-187, 202-224, 251-273, 296-318, 353-372, 376-398, 422-441 and 451-473
216591021441	PS00218 Amino acid permeases signature.
216591021442	Protein of unknown function (DUF3717); Region: DUF3717; pfam12512
216591021443	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
216591021444	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021445	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold; Region: PBP2_BenM_CatM_CatR; cd08445
216591021446	dimerizarion interface [polypeptide binding]; other site
216591021447	CrgA pocket; other site
216591021448	substrate binding pocket [chemical binding]; other site
216591021449	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.3e-25
216591021450	Predicted helix-turn-helix motif with score 1599.000, SD 4.63 at aa 16-37, sequence RNFTRAAERLHIAQPPLSRQIQ
216591021451	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021452	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.3e-42
216591021453	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591021454	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1e-13
216591021455	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021456	3 probable transmembrane helices predicted for BCAM0753 by TMHMM2.0 at aa 20-39, 59-81 and 93-115
216591021457	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591021458	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591021459	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 5.2e-15
216591021460	PS01081 Bacterial regulatory proteins, tetR family signature.
216591021461	Predicted helix-turn-helix motif with score 1629.000, SD 4.74 at aa 38-59, sequence VTMEQIAAQADVAKRTLYNHFP
216591021462	This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the...; Region: GT1_Gtf_like; cd03784
216591021463	homodimer interface [polypeptide binding]; other site
216591021464	active site
216591021465	TDP-binding site; other site
216591021466	acceptor substrate-binding pocket; other site
216591021467	HMMPfam hit to PF03033, Glycosyltransferase family, score 2e-08
216591021468	histidine utilization repressor, proteobacterial; Region: his_ut_repres; TIGR02018
216591021469	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591021470	DNA-binding site [nucleotide binding]; DNA binding site
216591021471	UTRA domain; Region: UTRA; pfam07702
216591021472	HMMPfam hit to PF07702, UTRA domain, score 4.1e-40
216591021473	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 3.2e-23
216591021474	Predicted helix-turn-helix motif with score 1487.000, SD 4.25 at aa 29-50, sequence PSENELAREFNVARMTVNRALR
216591021475	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591021476	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591021477	trimer interface [polypeptide binding]; other site
216591021478	eyelet of channel; other site
216591021479	HMMPfam hit to PF00267, Gram-negative porin, score 6.2e-06
216591021480	histidine ABC transporter substrate-binding protein HisJ; Provisional; Region: PRK15437
216591021481	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591021482	substrate binding pocket [chemical binding]; other site
216591021483	membrane-bound complex binding site; other site
216591021484	hinge residues; other site
216591021485	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.8e-91
216591021486	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591021487	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021488	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591021489	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591021490	dimer interface [polypeptide binding]; other site
216591021491	conserved gate region; other site
216591021492	putative PBP binding loops; other site
216591021493	ABC-ATPase subunit interface; other site
216591021494	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.9e-30
216591021495	5 probable transmembrane helices predicted for BCAM0760 by TMHMM2.0 at aa 20-42, 55-77, 92-109, 156-178 and 191-213
216591021496	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591021497	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021498	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591021499	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591021500	dimer interface [polypeptide binding]; other site
216591021501	conserved gate region; other site
216591021502	putative PBP binding loops; other site
216591021503	ABC-ATPase subunit interface; other site
216591021504	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.3e-12
216591021505	3 probable transmembrane helices predicted for BCAM0761 by TMHMM2.0 at aa 20-42, 63-85 and 199-221
216591021506	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591021507	ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; Region: HisP; COG4598
216591021508	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591021509	Walker A/P-loop; other site
216591021510	ATP binding site [chemical binding]; other site
216591021511	Q-loop/lid; other site
216591021512	ABC transporter signature motif; other site
216591021513	Walker B; other site
216591021514	D-loop; other site
216591021515	H-loop/switch region; other site
216591021516	HMMPfam hit to PF00005, ABC transporter score 1.6e-67
216591021517	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021518	PS00211 ABC transporters family signature.
216591021519	Domain of Unknown Function (DUF1080); Region: DUF1080; pfam06439
216591021520	domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins; Region: PA14; smart00758
216591021521	HMMPfam hit to PF07691, PA14 domain, score 1.6e-24
216591021522	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021523	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021524	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591021525	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591021526	DNA binding site [nucleotide binding]
216591021527	Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_sucrose_transcription_regulator; cd06288
216591021528	putative dimerization interface [polypeptide binding]; other site
216591021529	putative ligand binding site [chemical binding]; other site
216591021530	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 4.3e-09
216591021531	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 8.7e-07
216591021532	PS00356 Bacterial regulatory proteins, lacI family signature.
216591021533	aldose 1-epimerase, similar to Escherichia coli YphB; Region: Aldose_epim_Ec_YphB; cd09021
216591021534	active site
216591021535	catalytic residues [active]
216591021536	HMMPfam hit to PF01263, Aldose 1-epimerase, score 2.4e-43
216591021537	Periplasmic binding domain of ABC-type YtfQ-like transport systems; Region: PBP1_YtfQ_like; cd06309
216591021538	putative ligand binding site [chemical binding]; other site
216591021539	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591021540	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021541	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 5.1e-07
216591021542	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
216591021543	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591021544	Walker A/P-loop; other site
216591021545	ATP binding site [chemical binding]; other site
216591021546	Q-loop/lid; other site
216591021547	ABC transporter signature motif; other site
216591021548	Walker B; other site
216591021549	D-loop; other site
216591021550	H-loop/switch region; other site
216591021551	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591021552	HMMPfam hit to PF00005, ABC transporter score 6.4e-54
216591021553	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021554	HMMPfam hit to PF00005, ABC transporter score 6.2e-25
216591021555	PS00211 ABC transporters family signature.
216591021556	Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of...; Region: TM_PBP1_branched-chain-AA_like; cl00454
216591021557	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591021558	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591021559	TM-ABC transporter signature motif; other site
216591021560	9 probable transmembrane helices predicted for BCAM0768 by TMHMM2.0 at aa 29-48, 58-75, 82-99, 103-125, 132-151, 171-193, 224-246, 266-288 and 301-320
216591021561	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 7e-60
216591021562	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591021563	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591021564	TM-ABC transporter signature motif; other site
216591021565	8 probable transmembrane helices predicted for BCAM0769 by TMHMM2.0 at aa 25-46, 56-78, 83-100, 104-126, 133-152, 172-194, 266-288 and 303-325
216591021566	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 4.2e-57
216591021567	Cupin domain; Region: Cupin_2; cl17218
216591021568	HMMPfam hit to PF07883, Cupin domain, score 1.2e-05
216591021569	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591021570	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591021571	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591021572	HMMPfam hit to PF01548, Transposase, score 0.001
216591021573	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 1.1e-39
216591021574	Protein of unknown function (DUF3761); Region: DUF3761; pfam12587
216591021575	1 probable transmembrane helix predicted for BCAM0773 by TMHMM2.0 at aa 5-27
216591021576	polyhydroxyalkanoate depolymerase, intracellular; Region: PHB_depoly_PhaZ; TIGR01849
216591021577	PHB de-polymerase C-terminus; Region: PHB_depo_C; pfam06850
216591021578	HMMPfam hit to PF06850, PHB de-polymerase C-terminus, score 2e-115
216591021579	GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with...; Region: GST_N_1; cd03043
216591021580	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591021581	putative C-terminal domain interface [polypeptide binding]; other site
216591021582	putative GSH binding site (G-site) [chemical binding]; other site
216591021583	putative dimer interface [polypeptide binding]; other site
216591021584	C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases; Region: GST_C_3; cd03194
216591021585	putative N-terminal domain interface [polypeptide binding]; other site
216591021586	putative dimer interface [polypeptide binding]; other site
216591021587	putative substrate binding pocket (H-site) [chemical binding]; other site
216591021588	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 0.0037
216591021589	Predicted helix-turn-helix motif with score 997.000, SD 2.58 at aa 21-42, sequence MRGWLLAKLSGLTFETISVPID
216591021590	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
216591021591	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
216591021592	ligand binding site [chemical binding]; other site
216591021593	flexible hinge region; other site
216591021594	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 1.5e-15
216591021595	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
216591021596	4 probable transmembrane helices predicted for BCAM0777 by TMHMM2.0 at aa 3-25, 35-57, 149-171 and 181-203
216591021597	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 9e-13
216591021598	Membrane MotB of proton-channel complex MotA/MotB; Region: MotB_plug; pfam13677
216591021599	Flagellar motor protein [Cell motility and secretion]; Region: MotB; COG1360
216591021600	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591021601	ligand binding site [chemical binding]; other site
216591021602	1 probable transmembrane helix predicted for BCAM0778 by TMHMM2.0 at aa 27-49
216591021603	HMMPfam hit to PF00691, OmpA family, score 9.6e-33
216591021604	Cache domain; Region: Cache_1; pfam02743
216591021605	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591021606	dimerization interface [polypeptide binding]; other site
216591021607	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
216591021608	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591021609	dimer interface [polypeptide binding]; other site
216591021610	putative CheW interface [polypeptide binding]; other site
216591021611	2 probable transmembrane helices predicted for BCAM0779 by TMHMM2.0 at aa 15-37 and 296-318
216591021612	HMMPfam hit to PF00672, HAMP domain, score 2.8e-18
216591021613	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 2.9e-85
216591021614	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591021615	ATP binding site [chemical binding]; other site
216591021616	putative Mg++ binding site [ion binding]; other site
216591021617	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591021618	nucleotide binding region [chemical binding]; other site
216591021619	ATP-binding site [chemical binding]; other site
216591021620	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 6.9e-08
216591021621	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 1.6e-12
216591021622	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 2.6e-13
216591021623	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591021624	Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: HutI; COG1228
216591021625	Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the...; Region: Met_dep_hydrolase_A; cd01299
216591021626	active site
216591021627	HMMPfam hit to PF01979, Amidohydrolase family, score 4.8e-36
216591021628	HMMPfam hit to PF07969, Amidohydrolase family, score 0.00031
216591021629	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591021630	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591021631	putative substrate translocation pore; other site
216591021632	HMMPfam hit to PF00083, Sugar (and other) transporter score 8.5e-23
216591021633	12 probable transmembrane helices predicted for BCAM0783 by TMHMM2.0 at aa 28-50, 65-87, 94-116, 121-140, 160-182, 197-214, 252-274, 284-306, 313-333, 343-365, 378-400 and 410-427
216591021634	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.4e-28
216591021635	PS00216 Sugar transport proteins signature 1.
216591021636	PS00217 Sugar transport proteins signature 2.
216591021637	PS00216 Sugar transport proteins signature 1.
216591021638	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591021639	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021640	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591021641	dimerization interface [polypeptide binding]; other site
216591021642	substrate binding pocket [chemical binding]; other site
216591021643	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-40
216591021644	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.4e-16
216591021645	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021646	Predicted helix-turn-helix motif with score 1947.000, SD 5.82 at aa 34-55, sequence ASFTKAAAELHLTQSAISRQIQ
216591021647	TIGR02594 family protein; Region: TIGR02594
216591021648	Protein of unknown function (DUF1493); Region: DUF1493; pfam07377
216591021649	HMMPfam hit to PF07377, Protein of unknown function (DUF1493), score 1.9e-07
216591021650	CDS contains a frameshift after codon 88. Similar to Burkholderia xenovorans (strain LB400) putative membrane protein UniProt:Q13UH2 (EMBL:CP000270 (143 aa) fasta scores: E()=8.2e-27, 58.741% id in 143 aa
216591021651	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591021652	HMMPfam hit to PF02321, Outer membrane efflux protein, score 6.4e-23
216591021653	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.9e-20
216591021654	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021655	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591021656	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591021657	putative substrate translocation pore; other site
216591021658	13 probable transmembrane helices predicted for BCAM0791 by TMHMM2.0 at aa 19-41, 56-78, 85-107, 113-135, 142-164, 174-196, 209-226, 241-260, 280-302, 312-334, 341-360, 407-426 and 488-510
216591021659	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.9e-46
216591021660	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021661	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021662	efflux pump membrane protein (multidrug resistance protein A); Region: 8a0101; TIGR00998
216591021663	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591021664	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591021665	HMMPfam hit to PF00529, HlyD family secretion protein, score 5e-39
216591021666	1 probable transmembrane helix predicted for BCAM0792 by TMHMM2.0 at aa 28-50
216591021667	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591021668	MarR family; Region: MarR_2; pfam12802
216591021669	HMMPfam hit to PF01047, MarR family, score 0.0022
216591021670	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591021671	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021672	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591021673	putative effector binding pocket; other site
216591021674	dimerization interface [polypeptide binding]; other site
216591021675	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.5e-33
216591021676	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 8.6e-19
216591021677	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021678	Predicted helix-turn-helix motif with score 1444.000, SD 4.11 at aa 17-38, sequence RSFTRAADMHGLARPVVSRAVA
216591021679	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591021680	MarR family; Region: MarR_2; pfam12802
216591021681	HMMPfam hit to PF01047, MarR family, score 4.5e-12
216591021682	Predicted helix-turn-helix motif with score 983.000, SD 2.53 at aa 64-85, sequence LLMSELADMLVMDRTTLLRALK
216591021683	Protein of unknown function (DUF521); Region: DUF521; pfam04412
216591021684	Putative Aconitase X catalytic domain; Region: AcnX; cd01355
216591021685	substrate binding site [chemical binding]; other site
216591021686	ligand binding site [chemical binding]; other site
216591021687	HMMPfam hit to PF04412, Protein of unknown function (DUF521), score 4.9e-156
216591021688	Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure...; Region: AcnX_swivel; cd01356
216591021689	substrate binding site [chemical binding]; other site
216591021690	HMMPfam hit to PF01989, Protein of unknown function DUF126, score 1.5e-07
216591021691	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591021692	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591021693	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591021694	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 5.2e-09
216591021695	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591021696	2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the...; Region: DCR_FMN; cd02930
216591021697	active site
216591021698	FMN binding site [chemical binding]; other site
216591021699	2,4-decadienoyl-CoA binding site; other site
216591021700	catalytic residue [active]
216591021701	4Fe-4S cluster binding site [ion binding]; other site
216591021702	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591021703	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 4.5e-111
216591021704	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoredu, score 2.3e-06
216591021705	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021706	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoredu, score 0.00021
216591021707	Protein of unknown function (DUF2471); Region: DUF2471; pfam10616
216591021708	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591021709	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021710	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_like_3; cd08461
216591021711	putative substrate binding pocket [chemical binding]; other site
216591021712	putative dimerization interface [polypeptide binding]; other site
216591021713	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.6e-32
216591021714	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.9e-18
216591021715	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021716	Predicted helix-turn-helix motif with score 1802.000, SD 5.32 at aa 30-51, sequence HNVTRAAEKLNMSQPSVSVQLQ
216591021717	Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]; Region: MdaB; COG2249
216591021718	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591021719	HMMPfam hit to PF02525, Flavodoxin-like fold, score 3.8e-94
216591021720	muconolactone delta-isomerase; Region: muco_delta; TIGR03221
216591021721	HMMPfam hit to PF02426, Muconolactone delta-isomerase, score 4.2e-60
216591021722	catechol 1,2-dioxygenase, proteobacterial; Region: catechol_proteo; TIGR02439
216591021723	Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of...; Region: 1,2-CTD; cd03460
216591021724	dimer interface [polypeptide binding]; other site
216591021725	active site
216591021726	HMMPfam hit to PF00775, Dioxygenase, score 1.2e-103
216591021727	PS00083 Intradiol ring-cleavage dioxygenases signature.
216591021728	HMMPfam hit to PF04444, Catechol dioxygenase N terminus, score 1.4e-34
216591021729	Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived...; Region: MLE; cd03318
216591021730	muconate and chloromuconate cycloisomerases; Region: mucon_cyclo; TIGR02534
216591021731	octamer interface [polypeptide binding]; other site
216591021732	active site
216591021733	HMMPfam hit to PF01188, Mandelate racemase / muconate lactonizing en, score 1e-91
216591021734	PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.
216591021735	HMMPfam hit to PF02746, Mandelate racemase / muconate lactonizing en, score 1.6e-45
216591021736	PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.
216591021737	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591021738	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
216591021739	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021740	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold; Region: PBP2_BenM_CatM_CatR; cd08445
216591021741	dimerizarion interface [polypeptide binding]; other site
216591021742	CrgA pocket; other site
216591021743	substrate binding pocket [chemical binding]; other site
216591021744	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.4e-23
216591021745	Predicted helix-turn-helix motif with score 1943.000, SD 5.80 at aa 16-37, sequence MNITRAAERLHMTQPPLSRQLQ
216591021746	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021747	HMMPfam hit to PF03466, LysR substrate binding domain, score 9e-48
216591021748	Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_1; pfam12729
216591021749	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cl00144
216591021750	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591021751	dimerization interface [polypeptide binding]; other site
216591021752	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591021753	dimer interface [polypeptide binding]; other site
216591021754	Methyl-accepting chemotaxis protein (MCP) signalling domain; Region: MCPsignal; pfam00015
216591021755	putative CheW interface [polypeptide binding]; other site
216591021756	2 probable transmembrane helices predicted for BCAM0807 by TMHMM2.0 at aa 12-34 and 184-206
216591021757	HMMPfam hit to PF00672, HAMP domain, score 4.5e-10
216591021758	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 2.6e-85
216591021759	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591021760	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591021761	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.2e-08
216591021762	PS00041 Bacterial regulatory proteins, araC family signature.
216591021763	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 7e-05
216591021764	Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H); Region: Rieske_RO_Alpha_OHBDO_like; cd03545
216591021765	C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins; Region: RHO_alpha_C_ahdA1c-like; cd08880
216591021766	putative alpha subunit interface [polypeptide binding]; other site
216591021767	putative active site [active]
216591021768	putative substrate binding site [chemical binding]; other site
216591021769	Fe binding site [ion binding]; other site
216591021770	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 4.8e-31
216591021771	PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature.
216591021772	HMMPfam hit to PF00848, Ring hydroxylating alpha subunit (cat, score 4.6e-05
216591021773	Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the...; Region: ring_hydroxylating_dioxygenases_beta; cd00667
216591021774	inter-subunit interface; other site
216591021775	HMMPfam hit to PF00866, Ring hydroxylating beta subunit, score 3.3e-07
216591021776	Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a...; Region: Rieske_RO_ferredoxin; cd03528
216591021777	[2Fe-2S] cluster binding site [ion binding]; other site
216591021778	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 5.1e-22
216591021779	phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional; Region: PRK09754
216591021780	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591021781	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591021782	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 1.6e-45
216591021783	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 3.3e-26
216591021784	Protein of unknown function (DUF445); Region: DUF445; pfam04286
216591021785	3 probable transmembrane helices predicted for BCAM0814 by TMHMM2.0 at aa 17-39, 44-64 and 402-424
216591021786	HMMPfam hit to PF04286, Protein of unknown function (DUF445), score 1.1e-109
216591021787	probable addiction module antidote protein; Region: dnstrm_HI1420; TIGR02684
216591021788	Predicted helix-turn-helix motif with score 1328.000, SD 3.71 at aa 50-71, sequence RGMSQVARDAGLSREGLYKALS
216591021789	putative addiction module killer protein; Region: upstrm_HI1419; TIGR02683
216591021790	HMMPfam hit to PF05973, Phage derived protein Gp49-like (DUF891), score 1.1e-11
216591021791	acetolactate synthase; Reviewed; Region: PRK08322
216591021792	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591021793	PYR/PP interface [polypeptide binding]; other site
216591021794	dimer interface [polypeptide binding]; other site
216591021795	TPP binding site [chemical binding]; other site
216591021796	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591021797	Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2...; Region: TPP_ALS; cd02010
216591021798	TPP-binding site [chemical binding]; other site
216591021799	dimer interface [polypeptide binding]; other site
216591021800	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 2.4e-50
216591021801	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 7.2e-21
216591021802	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 2.8e-55
216591021803	PS00187 Thiamine pyrophosphate enzymes signature.
216591021804	Aldehyde dehydrogenase family 21A1-like; Region: ALDH_F21_RNP123; cd07147
216591021805	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591021806	NAD(P) binding site [chemical binding]; other site
216591021807	catalytic residues [active]
216591021808	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.3e-164
216591021809	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591021810	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021811	NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]; Region: NhaP; COG0025
216591021812	12 probable transmembrane helices predicted for BCAM0819 by TMHMM2.0 at aa 5-24, 31-53, 57-76, 83-105, 110-132, 153-175, 185-207, 214-236, 266-288, 301-323, 351-373 and 380-402
216591021813	HMMPfam hit to PF00999, Sodium/hydrogen exchanger family, score 1e-58
216591021814	Response regulator receiver domain; Region: Response_reg; pfam00072
216591021815	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591021816	active site
216591021817	phosphorylation site [posttranslational modification]
216591021818	intermolecular recognition site; other site
216591021819	dimerization interface [polypeptide binding]; other site
216591021820	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591021821	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cl00080
216591021822	dimer interface [polypeptide binding]; other site
216591021823	phosphorylation site [posttranslational modification]
216591021824	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591021825	Mg2+ binding site [ion binding]; other site
216591021826	G-X-G motif; other site
216591021827	HMMPfam hit to PF00072, Response regulator receiver domain, score 5.4e-23
216591021828	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 0.0013
216591021829	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 4.2e-26
216591021830	Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_1; pfam12729
216591021831	Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840
216591021832	HAMP domain; Region: HAMP; pfam00672
216591021833	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591021834	dimer interface [polypeptide binding]; other site
216591021835	putative CheW interface [polypeptide binding]; other site
216591021836	2 probable transmembrane helices predicted for BCAM0821 by TMHMM2.0 at aa 28-47 and 204-226
216591021837	HMMPfam hit to PF00672, HAMP domain, score 9.4e-16
216591021838	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 2.2e-26
216591021839	CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cd00588
216591021840	HMMPfam hit to PF01584, CheW-like domain, score 8.7e-16
216591021841	Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]; Region: CheR; COG1352
216591021842	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591021843	S-adenosylmethionine binding site [chemical binding]; other site
216591021844	HMMPfam hit to PF01739, CheR methyltransferase, SAM binding domain, score 1.6e-46
216591021845	HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.0018
216591021846	Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]; Region: CheW; COG0835
216591021847	HMMPfam hit to PF01584, CheW-like domain, score 1.1e-19
216591021848	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
216591021849	putative binding surface; other site
216591021850	active site
216591021851	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591021852	ATP binding site [chemical binding]; other site
216591021853	Mg2+ binding site [ion binding]; other site
216591021854	G-X-G motif; other site
216591021855	CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cl00256
216591021856	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591021857	Response regulator receiver domain; Region: Response_reg; pfam00072
216591021858	active site
216591021859	phosphorylation site [posttranslational modification]
216591021860	intermolecular recognition site; other site
216591021861	dimerization interface [polypeptide binding]; other site
216591021862	HMMPfam hit to PF01627, Hpt domain, score 2.1e-10
216591021863	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 1.1e-22
216591021864	HMMPfam hit to PF01584, CheW-like domain, score 2.6e-15
216591021865	HMMPfam hit to PF00072, Response regulator receiver domain, score 6.5e-31
216591021866	chemotaxis-specific methylesterase; Provisional; Region: PRK12555
216591021867	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591021868	active site
216591021869	phosphorylation site [posttranslational modification]
216591021870	intermolecular recognition site; other site
216591021871	dimerization interface [polypeptide binding]; other site
216591021872	CheB methylesterase; Region: CheB_methylest; pfam01339
216591021873	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.6e-14
216591021874	HMMPfam hit to PF01339, CheB methylesterase, score 2.8e-60
216591021875	ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation...; Region: ClC_sycA_like; cd03682
216591021876	Chloride channel protein EriC [Inorganic ion transport and metabolism]; Region: EriC; COG0038
216591021877	putative Cl- selectivity filter; other site
216591021878	putative pore gating glutamate residue; other site
216591021879	8 probable transmembrane helices predicted for BCAM0827 by TMHMM2.0 at aa 74-96, 106-128, 201-223, 273-295, 307-329, 360-382, 389-411 and 426-448
216591021880	HMMPfam hit to PF00654, Voltage gated chloride channel, score 5.6e-22
216591021881	riboflavin synthase subunit alpha; Provisional; Region: PRK13020
216591021882	Lumazine binding domain; Region: Lum_binding; pfam00677
216591021883	Lumazine binding domain; Region: Lum_binding; pfam00677
216591021884	HMMPfam hit to PF00677, Lumazine binding domain, score 1.3e-23
216591021885	HMMPfam hit to PF00677, Lumazine binding domain, score 1.5e-22
216591021886	PS00693 Riboflavin synthase alpha chain family signature.
216591021887	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
216591021888	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591021889	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 0.00032
216591021890	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
216591021891	ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]; Region: ATM1; COG5265
216591021892	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591021893	Walker A/P-loop; other site
216591021894	ATP binding site [chemical binding]; other site
216591021895	Q-loop/lid; other site
216591021896	ABC transporter signature motif; other site
216591021897	Walker B; other site
216591021898	D-loop; other site
216591021899	H-loop/switch region; other site
216591021900	HMMPfam hit to PF00005, ABC transporter score 1.2e-65
216591021901	PS00211 ABC transporters family signature.
216591021902	PS00017 ATP/GTP-binding site motif A (P-loop).
216591021903	6 probable transmembrane helices predicted for BCAM0831 by TMHMM2.0 at aa 31-53, 68-90, 151-173, 178-200, 259-281 and 291-308
216591021904	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 1.2e-06
216591021905	Dyp-type peroxidase family; Region: Dyp_perox_fam; TIGR01413
216591021906	HMMPfam hit to PF04261, Dyp-type peroxidase family, score 1.3e-83
216591021907	Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]; Region: COG1765
216591021908	HMMPfam hit to PF02566, OsmC-like protein, score 1.1e-28
216591021909	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591021910	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591021911	The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold; Region: PBP2_Nitroaromatics_like; cd08417
216591021912	substrate binding pocket [chemical binding]; other site
216591021913	dimerization interface [polypeptide binding]; other site
216591021914	HMMPfam hit to PF03466, LysR substrate binding domain, score 6e-20
216591021915	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-22
216591021916	PS00044 Bacterial regulatory proteins, lysR family signature.
216591021917	Predicted helix-turn-helix motif with score 1603.000, SD 4.65 at aa 22-43, sequence GGIGAAARALHLTQPAVTHALN
216591021918	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591021919	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.8e-05
216591021920	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00016
216591021921	manganese transport protein MntH; Reviewed; Region: PRK00701
216591021922	Natural resistance-associated macrophage protein; Region: Nramp; pfam01566
216591021923	HMMPfam hit to PF01566, Natural resistance-associated macrophage pro, score 1.6e-139
216591021924	9 probable transmembrane helices predicted for BCAM0836 by TMHMM2.0 at aa 63-85, 138-160, 167-189, 213-232, 261-283, 298-320, 351-368, 373-395 and 415-437
216591021925	6 probable transmembrane helices predicted for BCAM0837 by TMHMM2.0 at aa 5-27, 32-54, 69-91, 98-115, 125-142 and 149-171
216591021926	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591021927	short chain dehydrogenase; Validated; Region: PRK07069
216591021928	NAD(P) binding site [chemical binding]; other site
216591021929	active site
216591021930	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.9e-25
216591021931	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00088
216591021932	PS00061 Short-chain dehydrogenases/reductases family signature.
216591021933	Putative NADP-dependent oxidoreductases [General function prediction only]; Region: COG2130
216591021934	Prostaglandin dehydrogenases; Region: PGDH; cd05288
216591021935	NAD(P) binding site [chemical binding]; other site
216591021936	substrate binding site [chemical binding]; other site
216591021937	dimer interface [polypeptide binding]; other site
216591021938	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 0.003
216591021939	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021940	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 1.6e-25
216591021941	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628
216591021942	Domain of unknown function DUF20; Region: UPF0118; pfam01594
216591021943	HMMPfam hit to PF01594, Domain of unknown function DUF20, score 2.6e-51
216591021944	7 probable transmembrane helices predicted for BCAM0842 by TMHMM2.0 at aa 10-43, 63-85, 154-176, 216-238, 248-270, 277-299 and 314-336
216591021945	The SYLF domain (also called DUF500), a novel lipid-binding module; Region: SYLF; cd11524
216591021946	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021947	Bacterial protein of unknown function (DUF883); Region: DUF883; pfam05957
216591021948	HMMPfam hit to PF05957, Bacterial protein of unknown function (DUF88, score 5.2e-14
216591021949	YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate...; Region: YhcR_OBF_like; cd04486
216591021950	generic binding surface I; other site
216591021951	generic binding surface II; other site
216591021952	Mycoplasma pulmonis MnuA nuclease-like; Region: MnuA_DNase1-like; cd10283
216591021953	putative active site [active]
216591021954	putative catalytic site [active]
216591021955	putative Mg binding site IVb [ion binding]; other site
216591021956	putative phosphate binding site [ion binding]; other site
216591021957	putative DNA binding site [nucleotide binding]; other site
216591021958	putative Mg binding site IVa [ion binding]; other site
216591021959	HMMPfam hit to PF03372, Endonuclease/Exonuclease/phosphatase fa, score 8.9e-22
216591021960	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021961	YCII-related domain; Region: YCII; cl00999
216591021962	HMMPfam hit to PF04946, DGPF domain, score 1.2e-30
216591021963	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3795
216591021964	HMMPfam hit to PF04946, DGPF domain, score 6.1e-41
216591021965	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591021966	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_24; cd09012
216591021967	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 7.3e-07
216591021968	Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]; Region: COG4941
216591021969	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591021970	HMMPfam hit to PF04542, Sigma-70 region, score 2.2e-11
216591021971	HMMPfam hit to PF08281, Sigma-70, region, score 4e-09
216591021972	Predicted helix-turn-helix motif with score 1031.000, SD 2.70 at aa 147-168, sequence LTTGEIARAFLTPEPTIAQRIV
216591021973	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021974	Rubrerythrin [Energy production and conversion]; Region: COG1592
216591021975	Rubrerythrin, ferritin-like diiron-binding domain; Region: Rubrerythrin; cd01041
216591021976	binuclear metal center [ion binding]; other site
216591021977	HMMPfam hit to PF02915, Rubrerythrin, score 7.6e-33
216591021978	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
216591021979	Cysteine-rich domain; Region: CCG; pfam02754
216591021980	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591021981	Protein of unknown function (DUF3501); Region: DUF3501; pfam12007
216591021982	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591021983	GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase; cd02509
216591021984	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Region: GMP_PMI; TIGR01479
216591021985	Substrate binding site; other site
216591021986	Mannose-6-phosphate isomerase; Region: MannoseP_isomer; pfam01050
216591021987	HMMPfam hit to PF01050, Mannose-6-phosphate isomerase, score 3.3e-120
216591021988	HMMPfam hit to PF07883, Cupin domain, score 7.2e-12
216591021989	HMMPfam hit to PF00483, Nucleotidyl transferase, score 1.2e-90
216591021990	CDS contains a frameshift and 11 bp deletion after codon 139. Similar to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ UniProt:P71241 (EMBL:AP009048 (464 aa) fasta scores: E()=4.1e-58, 40.260% id in 462 aa
216591021991	HMMPfam hit to PF02397, Bacterial sugar transferase, score 2.1e-38
216591021992	Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: Ugd; COG1004
216591021993	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
216591021994	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
216591021995	UDP binding domain; Region: UDPG_MGDP_dh_C; smart00984
216591021996	HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 2.1e-90
216591021997	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591021998	HMMPfam hit to PF00984, UDP-glucose/GDP-mannose dehydrogenase, score 2.2e-47
216591021999	HMMPfam hit to PF03720, UDP-glucose/GDP-mannose dehydrogenase, score 1.1e-35
216591022000	Low molecular weight phosphatase family; Region: LMWPc; cd00115
216591022001	Low molecular weight phosphotyrosine protein phosphatase; Region: LMWPc; pfam01451
216591022002	active site
216591022003	HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein, score 2.1e-30
216591022004	polysaccharide export protein Wza; Provisional; Region: PRK15078
216591022005	Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563
216591022006	SLBB domain; Region: SLBB; pfam10531
216591022007	SLBB domain; Region: SLBB; pfam10531
216591022008	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022009	HMMPfam hit to PF02563, Polysaccharide biosynthesis/export protei, score 2.8e-28
216591022010	tyrosine kinase; Provisional; Region: PRK11519
216591022011	Chain length determinant protein; Region: Wzz; pfam02706
216591022012	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
216591022013	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591022014	P-loop; other site
216591022015	Magnesium ion binding site [ion binding]; other site
216591022016	HMMPfam hit to PF02706, Chain length determinant protein, score 3.5e-34
216591022017	2 probable transmembrane helices predicted for BCAM0859 by TMHMM2.0 at aa 34-56 and 450-469
216591022018	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
216591022019	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
216591022020	active site
216591022021	HMMPfam hit to PF00535, Glycosyl transferase family, score 1.5e-22
216591022022	PS00215 Mitochondrial energy transfer proteins signature.
216591022023	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
216591022024	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591022025	10 probable transmembrane helices predicted for BCAM0862 by TMHMM2.0 at aa 44-62, 93-115, 127-149, 182-204, 238-255, 265-287, 300-322, 394-416, 429-446 and 450-472
216591022026	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
216591022027	Glycosyltransferase Family 4; Region: Glyco_transf_4; pfam13439
216591022028	HMMPfam hit to PF00534, Glycosyl transferases group, score 3.1e-31
216591022029	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591022030	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
216591022031	HMMPfam hit to PF00534, Glycosyl transferases group, score 1.3e-37
216591022032	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591022033	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591022034	12 probable transmembrane helices predicted for BCAM0865 by TMHMM2.0 at aa 27-49, 64-86, 98-120, 124-146, 153-175, 180-202, 233-255, 270-292, 299-316, 320-342, 358-380 and 384-406
216591022035	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-34
216591022036	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022037	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022038	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022039	Predicted transcriptional regulators [Transcription]; Region: COG1733
216591022040	HxlR-like helix-turn-helix; Region: HxlR; pfam01638
216591022041	HMMPfam hit to PF01638, HxlR-like helix-turn-helix, score 3.8e-18
216591022042	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591022043	putative substrate translocation pore; other site
216591022044	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591022045	12 probable transmembrane helices predicted for BCAM0867 by TMHMM2.0 at aa 21-43, 53-75, 88-110, 144-166, 173-195, 234-256, 277-299, 309-331, 344-361, 371-393, 414-436 and 441-458
216591022046	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 9.5e-62
216591022047	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591022048	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022049	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591022050	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591022051	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591022052	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 4.9e-06
216591022053	PS00041 Bacterial regulatory proteins, araC family signature.
216591022054	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.6e-06
216591022055	FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]; Region: FkpA; COG0545
216591022056	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
216591022057	HMMPfam hit to PF00254, FKBP-type peptidyl-prolyl cis-trans isomeras, score 1.8e-55
216591022058	PS00454 FKBP-type peptidyl-prolyl cis-trans isomerase signature 2.
216591022059	PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1.
216591022060	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022061	Predicted metal-dependent hydrolase [General function prediction only]; Region: COG3687
216591022062	Predicted metal-dependent hydrolase; Region: Metal_hydrol; pfam10118
216591022063	1 probable transmembrane helix predicted for BCAM0870 by TMHMM2.0 at aa 196-218
216591022064	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
216591022065	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591022066	Walker A motif; other site
216591022067	ATP binding site [chemical binding]; other site
216591022068	Walker B motif; other site
216591022069	arginine finger; other site
216591022070	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591022071	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3e-138
216591022072	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591022073	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591022074	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 2.3e-08
216591022075	Predicted helix-turn-helix motif with score 1460.000, SD 4.16 at aa 421-442, sequence HRINKAAAELGISRVTLYRMMI
216591022076	Predicted membrane protein [Function unknown]; Region: COG2246
216591022077	GtrA-like protein; Region: GtrA; pfam04138
216591022078	HMMPfam hit to PF04138, GtrA-like protein, score 1.5e-10
216591022079	4 probable transmembrane helices predicted for BCAM0872 by TMHMM2.0 at aa 12-34, 44-66, 73-92 and 102-124
216591022080	lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096
216591022081	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591022082	substrate binding pocket [chemical binding]; other site
216591022083	membrane-bound complex binding site; other site
216591022084	hinge residues; other site
216591022085	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 3.1e-87
216591022086	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022087	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591022088	Protein of unknown function (DUF2384); Region: DUF2384; pfam09722
216591022089	RES domain; Region: RES; smart00953
216591022090	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
216591022091	active site
216591022092	metal binding site [ion binding]; metal-binding site
216591022093	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 5.8e-11
216591022094	PS00125 Serine/threonine specific protein phosphatases signature.
216591022095	Protein of unknown function (DUF1345); Region: DUF1345; pfam07077
216591022096	HMMPfam hit to PF07077, Protein of unknown function (DUF1345), score 1.5e-80
216591022097	5 probable transmembrane helices predicted for BCAM0878 by TMHMM2.0 at aa 13-32, 36-58, 79-101, 111-133 and 194-216
216591022098	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591022099	GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved...; Region: GST_N_GTT1_like; cd03046
216591022100	putative C-terminal domain interface [polypeptide binding]; other site
216591022101	putative GSH binding site (G-site) [chemical binding]; other site
216591022102	putative dimer interface [polypeptide binding]; other site
216591022103	C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases; Region: GST_C_GTT1_like; cd03189
216591022104	putative N-terminal domain interface [polypeptide binding]; other site
216591022105	putative dimer interface [polypeptide binding]; other site
216591022106	putative substrate binding pocket (H-site) [chemical binding]; other site
216591022107	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 5.4e-12
216591022108	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022109	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591022110	S-adenosylmethionine binding site [chemical binding]; other site
216591022111	HMMPfam hit to PF08241, Methyltransferase domain, score 5.8e-14
216591022112	HMMPfam hit to PF08242, Methyltransferase domain, score 3.8e-14
216591022113	N-terminal Early set domain associated with the catalytic domain of Maltooligosyl trehalose trehalohydrolase (also called Glycosyltrehalose trehalohydrolase) and similar proteins; Region: E_set_MTHase_like_N; cd02853
216591022114	Alpha amylase catalytic domain family; Region: AmyAc_family; cl07893
216591022115	active site
216591022116	catalytic site [active]
216591022117	Domain of unknown function (DUF3459); Region: DUF3459; pfam11941
216591022118	HMMPfam hit to PF02922, Isoamylase N-terminal domain, score 1.1e-07
216591022119	Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-; Region: TMP_TenI; cd00564
216591022120	active site
216591022121	thiamine phosphate binding site [chemical binding]; other site
216591022122	pyrophosphate binding site [ion binding]; other site
216591022123	HMMPfam hit to PF02581, Thiamine monophosphate synthase/TENI, score 3.3e-36
216591022124	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
216591022125	Domain of unknown function DUF21; Region: DUF21; pfam01595
216591022126	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
216591022127	Transporter associated domain; Region: CorC_HlyC; smart01091
216591022128	HMMPfam hit to PF03471, Transporter associated domain, score 2.8e-13
216591022129	HMMPfam hit to PF00571, CBS domain pair, score 1.8e-21
216591022130	HMMPfam hit to PF01595, Domain of unknown function DUF21, score 3.1e-68
216591022131	4 probable transmembrane helices predicted for BCAM0883 by TMHMM2.0 at aa 5-27, 65-87, 102-124 and 136-158
216591022132	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591022133	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591022134	dimer interface [polypeptide binding]; other site
216591022135	phosphorylation site [posttranslational modification]
216591022136	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Region: HATPase_c; pfam02518
216591022137	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.9e-09
216591022138	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
216591022139	10 probable transmembrane helices predicted for BCAM0885 by TMHMM2.0 at aa 12-31, 41-63, 76-98, 102-124, 131-148, 159-178, 185-207, 217-239, 246-268 and 273-295
216591022140	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.8e-17
216591022141	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022142	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.5e-14
216591022143	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591022144	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591022145	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591022146	dimerization interface [polypeptide binding]; other site
216591022147	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-22
216591022148	PS00044 Bacterial regulatory proteins, lysR family signature.
216591022149	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.4e-17
216591022150	PS00044 Bacterial regulatory proteins, lysR family signature.
216591022151	Predicted helix-turn-helix motif with score 1595.000, SD 4.62 at aa 19-40, sequence ASFTRAADALGTTQSAVSLKLK
216591022152	4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cl00235
216591022153	active site 1 [active]
216591022154	dimer interface [polypeptide binding]; other site
216591022155	hexamer interface [polypeptide binding]; other site
216591022156	active site 2 [active]
216591022157	4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cl00235
216591022158	HMMPfam hit to PF01361, Tautomerase enzyme, score 8.4e-11
216591022159	HMMPfam hit to PF01361, Tautomerase enzyme, score 6.4e-05
216591022160	CHAD domain; Region: CHAD; pfam05235
216591022161	HMMPfam hit to PF05235, CHAD domain, score 1.5e-21
216591022162	N-terminal domain of molybdenum-binding protein [General function prediction only]; Region: ModE; COG2005
216591022163	DNA-binding transcriptional regulator ModE; Provisional; Region: PRK10676
216591022164	Molybdopterin-binding protein [Coenzyme metabolism]; Region: MopI; COG3585
216591022165	molybdenum-pterin binding domain; Region: Mop; TIGR00638
216591022166	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix protei, score 1.2e-17
216591022167	HMMPfam hit to PF03459, TOBE domain, score 6.4e-18
216591022168	HMMPfam hit to PF03459, TOBE domain, score 4.1e-17
216591022169	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591022170	sulfate ABC transporter, ATP-binding protein; Region: 3a0106s01; TIGR00968
216591022171	Walker A/P-loop; other site
216591022172	ATP binding site [chemical binding]; other site
216591022173	Q-loop/lid; other site
216591022174	ABC transporter signature motif; other site
216591022175	Walker B; other site
216591022176	D-loop; other site
216591022177	H-loop/switch region; other site
216591022178	HMMPfam hit to PF00005, ABC transporter score 7.8e-57
216591022179	PS00211 ABC transporters family signature.
216591022180	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022181	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591022182	dimer interface [polypeptide binding]; other site
216591022183	conserved gate region; other site
216591022184	putative PBP binding loops; other site
216591022185	ABC-ATPase subunit interface; other site
216591022186	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.5e-20
216591022187	5 probable transmembrane helices predicted for BCAM0891 by TMHMM2.0 at aa 15-34, 47-69, 84-104, 145-167 and 195-217
216591022188	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591022189	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
216591022190	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
216591022191	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 2.9e-10
216591022192	1 probable transmembrane helix predicted for BCAM0892 by TMHMM2.0 at aa 12-34
216591022193	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cl00474
216591022194	active site
216591022195	6 probable transmembrane helices predicted for BCAM0893 by TMHMM2.0 at aa 10-32, 45-67, 77-96, 103-125, 130-152 and 159-181
216591022196	HMMPfam hit to PF01569, PAP2 superfamily, score 0.00029
216591022197	Esterase PHB depolymerase; Region: Esterase_phd; pfam10503
216591022198	Protein of unknown function (DUF3563); Region: DUF3563; pfam12086
216591022199	peroxiredoxin, Ohr subfamily; Region: organ_hyd_perox; TIGR03561
216591022200	HMMPfam hit to PF02566, OsmC-like protein, score 4.9e-37
216591022201	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591022202	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591022203	putative Zn2+ binding site [ion binding]; other site
216591022204	putative DNA binding site [nucleotide binding]; other site
216591022205	HMMPfam hit to PF01047, MarR family, score 3.8e-22
216591022206	6 probable transmembrane helices predicted for BCAM0898 by TMHMM2.0 at aa 21-43, 47-69, 97-119, 152-174, 195-217 and 227-249
216591022207	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022208	Putative homoserine kinase type II (protein kinase fold) [General function prediction only]; Region: COG2334
216591022209	Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and...; Region: HomoserineK_II; cd05153
216591022210	putative active site [active]
216591022211	putative substrate binding site [chemical binding]; other site
216591022212	ATP binding site [chemical binding]; other site
216591022213	HMMPfam hit to PF01636, Phosphotransferase enzyme family, score 3.2e-33
216591022214	1 probable transmembrane helix predicted for BCAM0900 by TMHMM2.0 at aa 4-23
216591022215	AMP nucleosidase; Provisional; Region: PRK08292
216591022216	Bacterial AMP nucleoside phosphorylase N-terminus; Region: AMNp_N; pfam10423
216591022217	Nucleoside phosphorylase [Nucleotide transport and metabolism]; Region: Pfs; COG0775
216591022218	HMMPfam hit to PF01048, Phosphorylase family, score 1.9e-35
216591022219	2 probable transmembrane helices predicted for BCAM0902 by TMHMM2.0 at aa 5-24 and 34-56
216591022220	Predicted Rossmann fold nucleotide-binding protein [General function prediction only]; Region: COG1611
216591022221	HMMPfam hit to PF03641, Possible lysine decarboxylase, score 7.6e-53
216591022222	DNA polymerase I; Provisional; Region: PRK05755
216591022223	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
216591022224	active site
216591022225	metal binding site 1 [ion binding]; metal-binding site
216591022226	putative 5' ssDNA interaction site; other site
216591022227	metal binding site 3; metal-binding site
216591022228	metal binding site 2 [ion binding]; metal-binding site
216591022229	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
216591022230	putative DNA binding site [nucleotide binding]; other site
216591022231	putative metal binding site [ion binding]; other site
216591022232	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139
216591022233	active site
216591022234	catalytic site [active]
216591022235	substrate binding site [chemical binding]; other site
216591022236	Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637
216591022237	active site
216591022238	DNA binding site [nucleotide binding]
216591022239	catalytic site [active]
216591022240	HMMPfam hit to PF02739, 5'-3' exonuclease, N-terminal resolvase-, score 4.7e-77
216591022241	HMMPfam hit to PF01367, 5'-3' exonuclease, C-terminal SAM fold, score 5.6e-28
216591022242	HMMPfam hit to PF01612, 3'-5' exonuclease, score 1e-40
216591022243	HMMPfam hit to PF00476, DNA polymerase family A, score 2.9e-193
216591022244	PS00447 DNA polymerase family A signature.
216591022245	NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252
216591022246	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591022247	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 2.4e-19
216591022248	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 6e-12
216591022249	1 probable transmembrane helix predicted for BCAM0905 by TMHMM2.0 at aa 381-403
216591022250	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
216591022251	BAAT / Acyl-CoA thioester hydrolase C terminal; Region: BAAT_C; pfam08840
216591022252	HMMPfam hit to PF01738, Dienelactone hydrolase family, score 3.8e-73
216591022253	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125
216591022254	Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Region: SseA; COG2897
216591022255	active site residue [active]
216591022256	Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue; Region: TST_Repeat_2; cd01449
216591022257	active site residue [active]
216591022258	HMMPfam hit to PF00581, Rhodanese-like domain, score 2.5e-13
216591022259	PS00340 Growth factor and cytokines receptors family signature 2.
216591022260	PS00683 Rhodanese C-terminal signature.
216591022261	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022262	HMMPfam hit to PF00581, Rhodanese-like domain, score 1.3e-08
216591022263	PS00380 Rhodanese signature 1.
216591022264	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
216591022265	Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469
216591022266	[2Fe-2S] cluster binding site [ion binding]; other site
216591022267	C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases; Region: RHO_alpha_C; cd00680
216591022268	alpha subunit interface [polypeptide binding]; other site
216591022269	active site
216591022270	substrate binding site [chemical binding]; other site
216591022271	Fe binding site [ion binding]; other site
216591022272	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022273	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 4.7e-17
216591022274	exodeoxyribonuclease VII small subunit; Provisional; Region: PRK00977
216591022275	HMMPfam hit to PF02609, Exonuclease VII small subunit, score 1.2e-17
216591022276	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
216591022277	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
216591022278	substrate binding pocket [chemical binding]; other site
216591022279	chain length determination region; other site
216591022280	substrate-Mg2+ binding site; other site
216591022281	catalytic residues [active]
216591022282	aspartate-rich region 1; other site
216591022283	active site lid residues [active]
216591022284	aspartate-rich region 2; other site
216591022285	HMMPfam hit to PF00348, Polyprenyl synthetase, score 4.2e-89
216591022286	PS00723 Polyprenyl synthetases signature 1.
216591022287	PS00444 Polyprenyl synthetases signature 2.
216591022288	1-deoxy-D-xylulose-5-phosphate synthase; Provisional; Region: PRK05444
216591022289	Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products...; Region: TPP_DXS; cd02007
216591022290	TPP-binding site; other site
216591022291	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
216591022292	PYR/PP interface [polypeptide binding]; other site
216591022293	dimer interface [polypeptide binding]; other site
216591022294	TPP binding site [chemical binding]; other site
216591022295	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
216591022296	PS00801 Transketolase signature 1.
216591022297	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 2.3e-66
216591022298	PS00802 Transketolase signature 2.
216591022299	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 6.9e-34
216591022300	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022301	putative GTP cyclohydrolase; Provisional; Region: PRK13674
216591022302	HMMPfam hit to PF02649, Uncharacterized ACR, COG1469, score 6e-37
216591022303	UGMP family protein; Validated; Region: PRK09604
216591022304	tRNA threonylcarbamoyl adenosine modification protein YeaZ; Region: T6A_YeaZ; TIGR03725
216591022305	HMMPfam hit to PF00814, Glycoprotease family, score 2.2e-77
216591022306	Predicted flavoproteins [General function prediction only]; Region: COG2081
216591022307	HMMPfam hit to PF03486, HI0933-like protein, score 2.6e-194
216591022308	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00024
216591022309	HMMPfam hit to PF00890, FAD binding domain, score 0.0052
216591022310	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 0.0019
216591022311	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
216591022312	HMMPfam hit to PF01165, Ribosomal protein S21, score 3.8e-32
216591022313	Yqey-like protein; Region: YqeY; pfam09424
216591022314	HMMPfam hit to PF02637, GatB/Yqey domain, score 9.6e-45
216591022315	DNA primase; Validated; Region: dnaG; PRK05667
216591022316	CHC2 zinc finger; Region: zf-CHC2; pfam01807
216591022317	DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275
216591022318	TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364
216591022319	active site
216591022320	metal binding site [ion binding]; metal-binding site
216591022321	interdomain interaction site; other site
216591022322	DnaB-helicase binding domain of primase; Region: DnaB_bind; pfam10410
216591022323	DNA primase DnaG DnaB-binding; Region: DnaG_DnaB_bind; smart00766
216591022324	HMMPfam hit to PF01807, CHC2 zinc finger, score 6.5e-60
216591022325	HMMPfam hit to PF08275, DNA primase catalytic core, N-terminal, score 4e-60
216591022326	HMMPfam hit to PF01751, Toprim domain, score 2.4e-18
216591022327	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022328	HMMPfam hit to PF08278, DNA primase DnaG DnaB-binding, score 0.0014
216591022329	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
216591022330	Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979
216591022331	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
216591022332	Sigma-70, non-essential region; Region: Sigma70_ner; pfam04546
216591022333	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591022334	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
216591022335	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591022336	DNA binding residues [nucleotide binding]
216591022337	HMMPfam hit to PF03979, Sigma-70 factor, region, score 8.5e-36
216591022338	HMMPfam hit to PF00140, Sigma-70 factor, region, score 1.1e-16
216591022339	HMMPfam hit to PF04546, Sigma-70, non-essential region, score 8.1e-93
216591022340	PS00116 DNA polymerase family B signature.
216591022341	HMMPfam hit to PF04542, Sigma-70 region, score 2.1e-27
216591022342	PS00715 Sigma-70 factors family signature 1.
216591022343	HMMPfam hit to PF04539, Sigma-70 region, score 2.6e-36
216591022344	HMMPfam hit to PF04545, Sigma-70, region, score 1.2e-22
216591022345	Predicted helix-turn-helix motif with score 1917.000, SD 5.72 at aa 578-599, sequence HTLEEVGKQFDVTRERIRQIEA
216591022346	PS00716 Sigma-70 factors family signature 2.
216591022347	Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111
216591022348	putative active site [active]
216591022349	catalytic site [active]
216591022350	Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_2; cd09113
216591022351	PLD-like domain; Region: PLDc_2; pfam13091
216591022352	putative active site [active]
216591022353	catalytic site [active]
216591022354	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022355	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.0011
216591022356	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 7.4e-05
216591022357	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591022358	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591022359	DNA-binding site [nucleotide binding]; DNA binding site
216591022360	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591022361	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591022362	homodimer interface [polypeptide binding]; other site
216591022363	catalytic residue [active]
216591022364	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.7e-08
216591022365	PS00136 Serine proteases, subtilase family, aspartic acid active site.
216591022366	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 0.00043
216591022367	Pyridoxamine 5'-phosphate oxidase; Region: Pyridox_ox_2; pfam12900
216591022368	Activation domain of S53 peptidases; Region: Pro-peptidase_S53; cd11377
216591022369	peptidase domain interface [polypeptide binding]; other site
216591022370	Peptidase domain in the S53 family; Region: Peptidases_S53; cd04056
216591022371	active site
216591022372	catalytic triad [active]
216591022373	calcium binding site [ion binding]; other site
216591022374	HMMPfam hit to PF00082, Subtilase family, score 7.9e-07
216591022375	PS00138 Serine proteases, subtilase family, serine active site.
216591022376	1 probable transmembrane helix predicted for BCAM0922 by TMHMM2.0 at aa 12-34
216591022377	2 probable transmembrane helices predicted for BCAM0923 by TMHMM2.0 at aa 21-43 and 58-80
216591022378	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022379	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591022380	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591022381	active site
216591022382	phosphorylation site [posttranslational modification]
216591022383	intermolecular recognition site; other site
216591022384	dimerization interface [polypeptide binding]; other site
216591022385	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591022386	DNA binding site [nucleotide binding]
216591022387	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 4.8e-16
216591022388	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.5e-34
216591022389	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591022390	HMMPfam hit to PF02321, Outer membrane efflux protein, score 4.2e-51
216591022391	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.2e-42
216591022392	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022393	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915
216591022394	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591022395	12 probable transmembrane helices predicted for BCAM0926 by TMHMM2.0 at aa 9-31, 340-359, 366-388, 392-414, 438-460, 470-492, 532-554, 863-885, 892-914, 919-941, 962-984 and 999-1021
216591022396	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591022397	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591022398	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591022399	HMMPfam hit to PF00529, HlyD family secretion protein, score 1.3e-42
216591022400	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022401	Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin...; Region: APH; cd05150
216591022402	Phosphotransferase enzyme family; Region: APH; pfam01636
216591022403	active site
216591022404	ATP binding site [chemical binding]; other site
216591022405	antibiotic binding site [chemical binding]; other site
216591022406	HMMPfam hit to PF01636, Phosphotransferase enzyme family, score 1.2e-44
216591022407	VirK protein; Region: VirK; pfam06903
216591022408	Ankyrin repeats (many copies); Region: Ank_4; pfam13637
216591022409	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
216591022410	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
216591022411	HMMPfam hit to PF00023, Ankyrin repeat, score 0.0019
216591022412	HMMPfam hit to PF00023, Ankyrin repeat, score 0.044
216591022413	HMMPfam hit to PF00023, Ankyrin repeat, score 0.013
216591022414	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022415	Catalase [Inorganic ion transport and metabolism]; Region: KatE; COG0753
216591022416	Clade 1 of the heme-binding enzyme catalase; Region: catalase_clade_1; cd08154
216591022417	tetramer interface [polypeptide binding]; other site
216591022418	heme binding pocket [chemical binding]; other site
216591022419	HMMPfam hit to PF00199, Catalase, score 4e-216
216591022420	PS00437 Catalase proximal heme-ligand signature.
216591022421	PS00438 Catalase proximal active site signature.
216591022422	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591022423	HMMPfam hit to PF02321, Outer membrane efflux protein, score 8.6e-33
216591022424	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.1e-23
216591022425	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022426	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591022427	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591022428	putative substrate translocation pore; other site
216591022429	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591022430	12 probable transmembrane helices predicted for BCAM0933 by TMHMM2.0 at aa 25-47, 60-82, 97-119, 140-162, 177-199, 206-228, 238-260, 280-301, 316-338, 345-367, 413-430 and 498-515
216591022431	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022432	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.3e-53
216591022433	efflux pump membrane protein (multidrug resistance protein A); Region: 8a0101; TIGR00998
216591022434	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591022435	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591022436	HMMPfam hit to PF00529, HlyD family secretion protein, score 3.5e-45
216591022437	1 probable transmembrane helix predicted for BCAM0934 by TMHMM2.0 at aa 31-53
216591022438	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11552
216591022439	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591022440	Domain of unknown function (DUF1956); Region: DUF1956; pfam09209
216591022441	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 5.7e-18
216591022442	Predicted helix-turn-helix motif with score 1323.000, SD 3.69 at aa 41-62, sequence ASTREIAAMAGVNAPALQYYFE
216591022443	putative mechanosensitive channel protein; Provisional; Region: PRK11465
216591022444	Mechanosensitive ion channel; Region: MS_channel; pfam00924
216591022445	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 4.2e-46
216591022446	12 probable transmembrane helices predicted for BCAM0936 by TMHMM2.0 at aa 5-27, 148-170, 248-270, 280-302, 326-348, 352-374, 395-417, 437-459, 483-505, 520-542, 563-585 and 590-609
216591022447	PS00287 Cysteine proteases inhibitors signature.
216591022448	luciferase-type oxidoreductase, BA3436 family; Region: lucif_BA3436; TIGR03571
216591022449	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892
216591022450	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892
216591022451	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 2.3e-06
216591022452	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
216591022453	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 0.0019
216591022454	NAD-dependent deacetylase; Provisional; Region: PRK05333
216591022455	SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein...; Region: SIRT4; cd01409
216591022456	NAD+ binding site [chemical binding]; other site
216591022457	substrate binding site [chemical binding]; other site
216591022458	Zn binding site [ion binding]; other site
216591022459	HMMPfam hit to PF02146, Sir2 family, score 4e-45
216591022460	Methyltransferase domain; Region: Methyltransf_23; pfam13489
216591022461	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591022462	S-adenosylmethionine binding site [chemical binding]; other site
216591022463	HMMPfam hit to PF06080, Protein of unknown function (DUF938), score 2.3e-108
216591022464	HMMPfam hit to PF08241, Methyltransferase domain, score 3.2e-10
216591022465	HMMPfam hit to PF08242, Methyltransferase domain, score 5.2e-05
216591022466	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591022467	6-phosphogluconate dehydrogenase; Validated; Region: PRK09287
216591022468	6-phosphogluconate dehydrogenase, C-terminal domain; Region: 6PGD; pfam00393
216591022469	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 7.5e-88
216591022470	HMMPfam hit to PF00393, 6-phosphogluconate dehydrogenase, C-ter, score 2.5e-226
216591022471	PS00461 6-phosphogluconate dehydrogenase signature.
216591022472	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591022473	1 probable transmembrane helix predicted for BCAM0942 by TMHMM2.0 at aa 10-32
216591022474	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
216591022475	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
216591022476	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
216591022477	E3 interaction surface; other site
216591022478	lipoyl attachment site [posttranslational modification]; other site
216591022479	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022480	HMMPfam hit to PF01476, LysM domain, score 2.8e-12
216591022481	HMMPfam hit to PF01551, Peptidase family M23, score 4.4e-29
216591022482	6 probable transmembrane helices predicted for BCAM0945 by TMHMM2.0 at aa 5-27, 42-64, 77-94, 109-126, 138-157 and 172-194
216591022483	Cytochrome B561 [Energy production and conversion]; Region: CybB; COG3038
216591022484	HMMPfam hit to PF01292, Cytochrome b561 family, score 7.5e-41
216591022485	4 probable transmembrane helices predicted for BCAM0946 by TMHMM2.0 at aa 13-35, 45-67, 90-112 and 145-167
216591022486	2 probable transmembrane helices predicted for BCAM0946a by TMHMM2.0 at aa 7-29 and 78-100
216591022487	TonB-dependent copper receptor; Region: TonB-copper; TIGR01778
216591022488	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591022489	N-terminal plug; other site
216591022490	ligand-binding site [chemical binding]; other site
216591022491	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 2.6e-21
216591022492	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022493	HMMPfam hit to PF00593, TonB dependent receptor, score 2.2e-23
216591022494	Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]; Region: LipA; COG1075
216591022495	Lipase (class 2); Region: Lipase_2; pfam01674
216591022496	PGAP1-like protein; Region: PGAP1; pfam07819
216591022497	1 probable transmembrane helix predicted for BCAM0949 by TMHMM2.0 at aa 12-34
216591022498	HMMPfam hit to PF07819, PGAP1-like protein, score 0.0013
216591022499	HMMPfam hit to PF05057, Putative serine esterase (DUF676), score 0.00039
216591022500	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 7.1e-27
216591022501	PS00120 Lipases, serine active site.
216591022502	lipase chaperone; Provisional; Region: PRK01294
216591022503	Proteobacterial lipase chaperone protein; Region: Lipase_chap; cl02224
216591022504	1 probable transmembrane helix predicted for BCAM0950 by TMHMM2.0 at aa 13-35
216591022505	HMMPfam hit to PF03280, Proteobacterial lipase chaperone protein, score 2.3e-132
216591022506	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591022507	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591022508	DNA-binding site [nucleotide binding]; DNA binding site
216591022509	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591022510	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591022511	homodimer interface [polypeptide binding]; other site
216591022512	catalytic residue [active]
216591022513	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.2e-08
216591022514	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 1.7e-12
216591022515	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
216591022516	ATP-binding cassette domain of the polyamine transporter; Region: ABC_PotA_N; cd03300
216591022517	Walker A/P-loop; other site
216591022518	ATP binding site [chemical binding]; other site
216591022519	Q-loop/lid; other site
216591022520	ABC transporter signature motif; other site
216591022521	Walker B; other site
216591022522	D-loop; other site
216591022523	H-loop/switch region; other site
216591022524	TOBE domain; Region: TOBE_2; pfam08402
216591022525	HMMPfam hit to PF00005, ABC transporter score 3.8e-58
216591022526	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022527	PS00211 ABC transporters family signature.
216591022528	HMMPfam hit to PF08402, TOBE domain, score 2.5e-20
216591022529	Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]; Region: PotD; COG0687
216591022530	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
216591022531	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 3.8e-06
216591022532	1 probable transmembrane helix predicted for BCAM0953 by TMHMM2.0 at aa 13-35
216591022533	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591022534	dimer interface [polypeptide binding]; other site
216591022535	conserved gate region; other site
216591022536	putative PBP binding loops; other site
216591022537	ABC-ATPase subunit interface; other site
216591022538	6 probable transmembrane helices predicted for BCAM0954 by TMHMM2.0 at aa 28-50, 204-226, 238-260, 287-309, 342-364 and 384-406
216591022539	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.00066
216591022540	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591022541	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022542	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
216591022543	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591022544	dimer interface [polypeptide binding]; other site
216591022545	conserved gate region; other site
216591022546	putative PBP binding loops; other site
216591022547	ABC-ATPase subunit interface; other site
216591022548	PS00430 TonB-dependent receptor proteins signature 1.
216591022549	6 probable transmembrane helices predicted for BCAM0955 by TMHMM2.0 at aa 20-42, 80-102, 114-136, 146-168, 189-211 and 243-265
216591022550	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2e-15
216591022551	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591022552	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591022553	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591022554	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591022555	13 probable transmembrane helices predicted for BCAM0956 by TMHMM2.0 at aa 21-43, 53-75, 87-109, 114-136, 143-165, 170-192, 205-227, 231-249, 269-291, 306-328, 335-357, 401-423 and 430-452
216591022556	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.7e-55
216591022557	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022558	Activation domain of S53 peptidases; Region: Pro-peptidase_S53; cd11377
216591022559	peptidase domain interface [polypeptide binding]; other site
216591022560	Peptidase domain in the S53 family; Region: Peptidases_S53; cd04056
216591022561	active site
216591022562	catalytic triad [active]
216591022563	calcium binding site [ion binding]; other site
216591022564	HMMPfam hit to PF00082, Subtilase family, score 1.7e-23
216591022565	PS00138 Serine proteases, subtilase family, serine active site.
216591022566	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591022567	dimerization interface [polypeptide binding]; other site
216591022568	putative DNA binding site [nucleotide binding]; other site
216591022569	putative Zn2+ binding site [ion binding]; other site
216591022570	HMMPfam hit to PF01022, Bacterial regulatory protein, arsR family, score 2.5e-11
216591022571	Predicted helix-turn-helix motif with score 1337.000, SD 3.74 at aa 30-51, sequence LTVAALTAHAGVSQPAVSKHLG
216591022572	Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins; Region: SRPBCC_CalC_Aha1-like; cd07814
216591022573	putative hydrophobic ligand binding site [chemical binding]; other site
216591022574	HMMPfam hit to PF08327, Activator of Hsp90 ATPase homolog 1-like pro, score 9.6e-17
216591022575	Domain of unknown function (DU1801); Region: DUF1801; cl17490
216591022576	aconitate hydratase; Provisional; Region: acnA; PRK12881
216591022577	Aconitase A catalytic domain; Region: AcnA_IRP; cd01586
216591022578	substrate binding site [chemical binding]; other site
216591022579	ligand binding site [chemical binding]; other site
216591022580	Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group...; Region: AcnA_IRP_Swivel; cd01580
216591022581	substrate binding site [chemical binding]; other site
216591022582	HMMPfam hit to PF00694, Aconitase C-terminal domain, score 7.6e-52
216591022583	HMMPfam hit to PF00330, Aconitase family (aconitate hydratase), score 1e-186
216591022584	PS01244 Aconitase family signature 2.
216591022585	PS00450 Aconitase family signature 1.
216591022586	2-methylcitrate dehydratase; Provisional; Region: prpD; PRK09425
216591022587	2-methylcitrate dehydratase; Region: prpD; TIGR02330
216591022588	HMMPfam hit to PF03972, MmgE/PrpD family, score 2.6e-228
216591022589	1 probable transmembrane helix predicted for BCAM0963 by TMHMM2.0 at aa 4-26
216591022590	HpcH/HpaI aldolase/citrate lyase family; Region: HpcH_HpaI; cl17231
216591022591	HMMPfam hit to PF03328, HpcH/HpaI aldolase/citrate lyase family, score 4.3e-05
216591022592	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022593	malate dehydrogenase; Provisional; Region: PRK05442
216591022594	Chloroplast-like malate dehydrogenases; Region: MDH_choloroplast_like; cd01338
216591022595	NAD(P) binding site [chemical binding]; other site
216591022596	dimer interface [polypeptide binding]; other site
216591022597	malate binding site [chemical binding]; other site
216591022598	HMMPfam hit to PF02866, lactate/malate dehydrogenase, alpha/beta C-t, score 1.6e-45
216591022599	HMMPfam hit to PF00056, lactate/malate dehydrogenase, NAD binding do, score 2.1e-54
216591022600	Transcriptional regulators [Transcription]; Region: PhnF; COG2188
216591022601	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591022602	DNA-binding site [nucleotide binding]; DNA binding site
216591022603	The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain; Region: UTRA; smart00866
216591022604	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 6.8e-26
216591022605	Predicted helix-turn-helix motif with score 1256.000, SD 3.46 at aa 67-88, sequence PSEVELAARYKVSQGTVRKAID
216591022606	HMMPfam hit to PF07702, UTRA domain, score 3.6e-34
216591022607	Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the...; Region: SQR_TypeC_SdhC; cd03499
216591022608	Iron-sulfur protein interface; other site
216591022609	proximal quinone binding site [chemical binding]; other site
216591022610	SdhD (CybS) interface [polypeptide binding]; other site
216591022611	proximal heme binding site [chemical binding]; other site
216591022612	HMMPfam hit to PF01127, Succinate dehydrogenase cytochrome b subunit, score 1.6e-32
216591022613	3 probable transmembrane helices predicted for BCAM0967 by TMHMM2.0 at aa 32-54, 69-91 and 115-137
216591022614	Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the...; Region: SQR_TypeC_SdhD; cd03494
216591022615	SdhC subunit interface [polypeptide binding]; other site
216591022616	proximal heme binding site [chemical binding]; other site
216591022617	cardiolipin binding site; other site
216591022618	Iron-sulfur protein interface; other site
216591022619	proximal quinone binding site [chemical binding]; other site
216591022620	HMMPfam hit to PF01127, Succinate dehydrogenase cytochrome b subunit, score 6.6e-05
216591022621	3 probable transmembrane helices predicted for BCAM0968 by TMHMM2.0 at aa 23-45, 55-77 and 98-120
216591022622	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022623	succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK07057
216591022624	L-aspartate oxidase; Provisional; Region: PRK06175
216591022625	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
216591022626	HMMPfam hit to PF00890, FAD binding domain, score 1.1e-159
216591022627	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0011
216591022628	PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site.
216591022629	HMMPfam hit to PF02910, Fumarate reductase/succinate dehydroge, score 5.7e-66
216591022630	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_3; pfam13085
216591022631	succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK05950
216591022632	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591022633	HMMPfam hit to PF03937, TPR repeat region, score 4.1e-12
216591022634	Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114
216591022635	Citrate synthase [Energy production and conversion]; Region: GltA; COG0372
216591022636	dimer interface [polypeptide binding]; other site
216591022637	active site
216591022638	citrylCoA binding site [chemical binding]; other site
216591022639	NADH binding [chemical binding]; other site
216591022640	cationic pore residues; other site
216591022641	oxalacetate/citrate binding site [chemical binding]; other site
216591022642	coenzyme A binding site [chemical binding]; other site
216591022643	catalytic triad [active]
216591022644	HMMPfam hit to PF00285, Citrate synthase, score 1.3e-223
216591022645	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022646	PS00480 Citrate synthase signature.
216591022647	Cupin domain; Region: Cupin_2; cl17218
216591022648	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591022649	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591022650	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.5e-07
216591022651	PS00041 Bacterial regulatory proteins, araC family signature.
216591022652	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 4.2e-06
216591022653	Predicted helix-turn-helix motif with score 1414.000, SD 4.00 at aa 206-227, sequence LRIDALAAAAHMSERTLQRLFV
216591022654	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_19; cd07262
216591022655	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591022656	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 1.6e-10
216591022657	PS00190 Cytochrome c family heme-binding site signature.
216591022658	Protein of unknown function (DUF1479); Region: DUF1479; pfam07350
216591022659	HMMPfam hit to PF07350, Protein of unknown function (DUF1479), score 1.6e-208
216591022660	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
216591022661	N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]; Region: COG1834
216591022662	Amidinotransferase; Region: Amidinotransf; cl12043
216591022663	HMMPfam hit to PF02274, Amidinotransferase, score 3.1e-17
216591022664	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591022665	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
216591022666	AsnC family; Region: AsnC_trans_reg; pfam01037
216591022667	HMMPfam hit to PF01037, AsnC family, score 2.1e-06
216591022668	lysine transporter; Provisional; Region: PRK10836
216591022669	HMMPfam hit to PF00324, Amino acid permease, score 1e-156
216591022670	12 probable transmembrane helices predicted for BCAM0978 by TMHMM2.0 at aa 27-46, 56-78, 99-121, 136-158, 165-187, 207-229, 250-272, 295-317, 348-370, 375-397, 418-440 and 450-472
216591022671	PS00218 Amino acid permeases signature.
216591022672	PS00435 Peroxidases proximal heme-ligand signature.
216591022673	GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of...; Region: GST_N_Sigma_like; cd03039
216591022674	glutathione s-transferase; Provisional; Region: PTZ00057
216591022675	GSH binding site (G-site) [chemical binding]; other site
216591022676	C-terminal domain interface [polypeptide binding]; other site
216591022677	dimer interface [polypeptide binding]; other site
216591022678	C-terminal, alpha helical domain of Class Sigma-like Glutathione S-transferases; Region: GST_C_Sigma_like; cd03192
216591022679	dimer interface [polypeptide binding]; other site
216591022680	N-terminal domain interface [polypeptide binding]; other site
216591022681	substrate binding pocket (H-site) [chemical binding]; other site
216591022682	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 4.4e-10
216591022683	Cupin domain; Region: Cupin_2; cl17218
216591022684	HMMPfam hit to PF07883, Cupin domain, score 4e-05
216591022685	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022686	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022687	3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402
216591022688	3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; Region: IPMI; cd01583
216591022689	substrate binding site [chemical binding]; other site
216591022690	ligand binding site [chemical binding]; other site
216591022691	HMMPfam hit to PF00330, Aconitase family (aconitate hydratase), score 2.4e-243
216591022692	PS00450 Aconitase family signature 1.
216591022693	PS01244 Aconitase family signature 2.
216591022694	Entericidin EcnA/B family; Region: Entericidin; cl02322
216591022695	HMMPfam hit to PF08085, Entericidin EcnA/B family, score 5.1e-11
216591022696	1 probable transmembrane helix predicted for BCAM0983A by TMHMM2.0 at aa 7-29
216591022697	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022698	isopropylmalate isomerase small subunit; Provisional; Region: leuD; PRK01641
216591022699	Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate...; Region: IPMI_Swivel; cd01577
216591022700	substrate binding site [chemical binding]; other site
216591022701	HMMPfam hit to PF00694, Aconitase C-terminal domain, score 5e-59
216591022702	3-isopropylmalate dehydrogenase; Provisional; Region: PRK00772
216591022703	tartrate dehydrogenase; Region: TTC; TIGR02089
216591022704	HMMPfam hit to PF00180, Isocitrate/isopropylmalate dehydrogenase, score 3.9e-196
216591022705	PS00470 Isocitrate and isopropylmalate dehydrogenases signature.
216591022706	aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK06598
216591022707	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
216591022708	HMMPfam hit to PF01118, Semialdehyde dehydrogenase, NAD bindi, score 7.9e-39
216591022709	HMMPfam hit to PF02774, Semialdehyde dehydrogenase, dimerisat, score 8.5e-70
216591022710	PS01103 Aspartate-semialdehyde dehydrogenase signature.
216591022711	flagellar hook protein FlgE; Validated; Region: flgE; PRK05682
216591022712	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
216591022713	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
216591022714	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
216591022715	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 4.7e-17
216591022716	HMMPfam hit to PF07559, Flagellar basal body protein FlaE, score 2.4e-16
216591022717	HMMPfam hit to PF00460, Flagella basal body rod protein, score 6.8e-10
216591022718	PS00588 Flagella basal body rod proteins signature.
216591022719	FimV N-terminal domain; Region: FimV_core; TIGR03505
216591022720	FimV C-terminal domain; Region: FimV_Cterm; TIGR03504
216591022721	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
216591022722	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
216591022723	dimerization interface 3.5A [polypeptide binding]; other site
216591022724	active site
216591022725	HMMPfam hit to PF01416, tRNA pseudouridine synthase, score 1.1e-29
216591022726	HMMPfam hit to PF01416, tRNA pseudouridine synthase, score 2.2e-33
216591022727	Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are...; Region: PRAI; cd00405
216591022728	active site
216591022729	HMMPfam hit to PF00697, N-(5'phosphoribosyl)anthranilate (PRA) isome, score 6.6e-56
216591022730	tryptophan synthase, beta subunit; Region: trpB; TIGR00263
216591022731	Tryptophan synthase-beta:  Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446
216591022732	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591022733	catalytic residue [active]
216591022734	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 1.1e-128
216591022735	PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site.
216591022736	DNA modification methylase [DNA replication, recombination, and repair]; Region: COG0863
216591022737	DNA methylase; Region: N6_N4_Mtase; pfam01555
216591022738	PS00228 Tubulin-beta mRNA autoregulation signal.
216591022739	HMMPfam hit to PF01555, DNA methylase, score 1e-70
216591022740	PS00092 N-6 Adenine-specific DNA methylases signature.
216591022741	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022742	tryptophan synthase alpha subunit; Provisional; Region: trpA; CHL00200
216591022743	Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both...; Region: Tryptophan_synthase_alpha; cd04724
216591022744	substrate binding site [chemical binding]; other site
216591022745	active site
216591022746	catalytic residues [active]
216591022747	heterodimer interface [polypeptide binding]; other site
216591022748	HMMPfam hit to PF00290, Tryptophan synthase alpha chain, score 1.9e-103
216591022749	PS00167 Tryptophan synthase alpha chain signature.
216591022750	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591022751	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022752	acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654
216591022753	malonate decarboxylase subunit beta; Reviewed; Region: PRK07189; cl17682
216591022754	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022755	Folylpolyglutamate synthase [Coenzyme metabolism]; Region: FolC; COG0285
216591022756	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
216591022757	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
216591022758	HMMPfam hit to PF08245, Mur ligase middle domain, score 7.8e-07
216591022759	PS01011 Folylpolyglutamate synthase signature 1.
216591022760	Sporulation related domain; Region: SPOR; cl10051
216591022761	1 probable transmembrane helix predicted for BCAM0996 by TMHMM2.0 at aa 40-58
216591022762	HMMPfam hit to PF05036, Sporulation related domain, score 2.7e-12
216591022763	Uncharacterized membrane protein, required for colicin V production [General function prediction only]; Region: CvpA; COG1286
216591022764	Colicin V production protein; Region: Colicin_V; pfam02674
216591022765	HMMPfam hit to PF02674, Colicin V production protein, score 8.2e-28
216591022766	4 probable transmembrane helices predicted for BCAM0997 by TMHMM2.0 at aa 4-26, 33-55, 65-87 and 107-126
216591022767	amidophosphoribosyltransferase; Provisional; Region: PRK09246
216591022768	Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of  glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the...; Region: GPATase_N; cd00715
216591022769	active site
216591022770	tetramer interface [polypeptide binding]; other site
216591022771	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
216591022772	active site
216591022773	PS00443 Glutamine amidotransferases class-II active site.
216591022774	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 1.2e-39
216591022775	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 2.8e-13
216591022776	PS00103 Purine/pyrimidine phosphoribosyl transferases signature.
216591022777	O-succinylhomoserine sulfhydrylase; Validated; Region: PRK08133
216591022778	CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614
216591022779	homodimer interface [polypeptide binding]; other site
216591022780	substrate-cofactor binding pocket; other site
216591022781	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591022782	catalytic residue [active]
216591022783	HMMPfam hit to PF01053, Cys/Met metabolism PLP-dependent enzy, score 6.9e-200
216591022784	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.00044
216591022785	PS00070 Aldehyde dehydrogenases cysteine active site.
216591022786	PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site.
216591022787	Group II intron - IBS1
216591022788	Group II intron - EBS1
216591022789	Group II intron - EBS3
216591022790	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591022791	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591022792	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591022793	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 9.4e-37
216591022794	RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651
216591022795	Reverse transcriptase (RNA-dependent DNA polymerase); Region: RVT_1; pfam00078
216591022796	putative active site [active]
216591022797	putative NTP binding site [chemical binding]; other site
216591022798	putative nucleic acid binding site [nucleotide binding]; other site
216591022799	Group II intron, maturase-specific domain; Region: GIIM; pfam08388
216591022800	HMMPfam hit to PF00078, Reverse transcriptase (RNA-dependent DNA pol, score 1.9e-57
216591022801	HMMPfam hit to PF08388, Group II intron, maturase-specific domain, score 2e-24
216591022802	Group II intron - IBS3
216591022803	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591022804	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591022805	NAD(P) binding site [chemical binding]; other site
216591022806	active site
216591022807	HMMPfam hit to PF04321, RmlD substrate binding domain, score 8.5e-05
216591022808	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 1.8e-05
216591022809	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.1e-46
216591022810	HMMPfam hit to PF07993, Male sterility protein, score 3.7e-06
216591022811	GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]; Region: Gmd; COG1089
216591022812	GDP-mannose 4,6 dehydratase, extended (e) SDRs; Region: GDP_MD_SDR_e; cd05260
216591022813	NADP-binding site; other site
216591022814	homotetramer interface [polypeptide binding]; other site
216591022815	substrate binding site [chemical binding]; other site
216591022816	homodimer interface [polypeptide binding]; other site
216591022817	active site
216591022818	HMMPfam hit to PF04321, RmlD substrate binding domain, score 0.0031
216591022819	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.1e-88
216591022820	PS00061 Short-chain dehydrogenases/reductases family signature.
216591022821	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591022822	HMMPfam hit to PF01757, Acyltransferase family, score 7.2e-38
216591022823	9 probable transmembrane helices predicted for BCAM1005 by TMHMM2.0 at aa 40-62, 83-105, 128-150, 155-177, 182-204, 211-233, 248-270, 283-305 and 311-333
216591022824	Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244
216591022825	Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_Wzx_like; cd13128
216591022826	HMMPfam hit to PF01943, Polysaccharide biosynthesis protein, score 1.5e-21
216591022827	12 probable transmembrane helices predicted for BCAM1007 by TMHMM2.0 at aa 9-31, 41-63, 84-106, 126-148, 161-178, 188-210, 223-241, 308-330, 342-364, 379-401, 421-443 and 453-475
216591022828	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591022829	This family is most closely related to the GT1 family of glycosyltransferases.  wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea; Region: GT1_wbaZ_like; cd03804
216591022830	putative ADP-binding pocket [chemical binding]; other site
216591022831	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
216591022832	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591022833	HMMPfam hit to PF00534, Glycosyl transferases group, score 1.7e-31
216591022834	HMMPfam hit to PF00534, Glycosyl transferases group, score 3.7e-41
216591022835	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591022836	HMMPfam hit to PF01757, Acyltransferase family, score 3.6e-26
216591022837	10 probable transmembrane helices predicted for BCAM1009 by TMHMM2.0 at aa 27-46, 61-83, 114-136, 171-193, 200-217, 222-239, 252-274, 279-296, 308-330 and 340-359
216591022838	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022839	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022840	Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541
216591022841	active site
216591022842	tetramer interface; other site
216591022843	HMMPfam hit to PF00483, Nucleotidyl transferase, score 1.2e-21
216591022844	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591022845	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591022846	HMMPfam hit to PF01757, Acyltransferase family, score 8.9e-16
216591022847	8 probable transmembrane helices predicted for BCAM1011 by TMHMM2.0 at aa 13-32, 37-54, 80-102, 160-182, 189-211, 221-240, 247-269 and 274-296
216591022848	HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 2.5e-08
216591022849	aminoglycoside resistance protein; Provisional; Region: PRK13746
216591022850	Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins; Region: NT_KNTase_like; cd05403
216591022851	active site
216591022852	NTP binding site [chemical binding]; other site
216591022853	metal binding triad [ion binding]; metal-binding site
216591022854	Domain of unknown function (DUF4111); Region: DUF4111; pfam13427
216591022855	HMMPfam hit to PF01909, Nucleotidyltransferase domain, score 2.8e-07
216591022856	Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates; Region: PhnB_like; cd06588
216591022857	dimer interface [polypeptide binding]; other site
216591022858	HMMPfam hit to PF06983, 3-demethylubiquinone-9 3-methyltransfera, score 5.4e-51
216591022859	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022860	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591022861	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591022862	trimer interface [polypeptide binding]; other site
216591022863	eyelet of channel; other site
216591022864	HMMPfam hit to PF00267, Gram-negative porin, score 2.5e-07
216591022865	Virulence factor BrkB; Region: Virul_fac_BrkB; pfam03631
216591022866	HMMPfam hit to PF03631, Ribonuclease BN-like family, score 1.5e-45
216591022867	6 probable transmembrane helices predicted for BCAM1016 by TMHMM2.0 at aa 40-62, 107-129, 150-172, 187-209, 222-244 and 254-276
216591022868	formate dehydrogenase, alpha subunit, proteobacterial-type; Region: formate-DH-alph; TIGR01553
216591022869	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_Formate-Dh-Na-like; cd02752
216591022870	[4Fe-4S] binding site [ion binding]; other site
216591022871	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
216591022872	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_Formate-Dh-Na-like; cd02752
216591022873	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_CT_Formate-Dh-Na-like; cd02792
216591022874	molybdopterin cofactor binding site; other site
216591022875	HMMPfam hit to PF04879, Molybdopterin oxidoreductase Fe4S4 do, score 4.1e-24
216591022876	PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.
216591022877	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 4.5e-19
216591022878	PS00215 Mitochondrial energy transfer proteins signature.
216591022879	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 4e-12
216591022880	formate dehydrogenase, beta subunit, Fe-S containing; Region: FDH-beta; TIGR01582
216591022881	4Fe-4S binding domain; Region: Fer4; cl02805
216591022882	Formate dehydrogenase N, transmembrane; Region: Form-deh_trans; pfam09163
216591022883	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 5.2e-06
216591022884	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591022885	Cytochrome b (N-terminus)/b6/petB:  Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria; Region: Cytochrome_b_N; cl00859
216591022886	formate dehydrogenase, gamma subunit; Region: formate-DH-gamm; TIGR01583
216591022887	4 probable transmembrane helices predicted for BCAM1020 by TMHMM2.0 at aa 20-42, 57-79, 118-140 and 155-177
216591022888	formate dehydrogenase accessory protein FdhE; Region: FdhE; TIGR01562
216591022889	Protein involved in formate dehydrogenase formation; Region: FdhE; pfam04216
216591022890	HMMPfam hit to PF04216, Protein involved in formate dehydrogenase fo, score 8.1e-79
216591022891	selenocysteine synthase; Provisional; Region: PRK04311
216591022892	Selenocysteine synthase N terminal; Region: Se-cys_synth_N; pfam12390
216591022893	Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]; Region: SelA; COG1921
216591022894	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591022895	catalytic residue [active]
216591022896	HMMPfam hit to PF03841, L-seryl-tRNA selenium transferase, score 4.4e-228
216591022897	HMMPfam hit to PF01053, Cys/Met metabolism PLP-dependent enzy, score 0.0051
216591022898	selenocysteinyl-tRNA-specific translation factor; Provisional; Region: PRK10512
216591022899	SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; Region: SelB; cd04171
216591022900	G1 box; other site
216591022901	putative GEF interaction site [polypeptide binding]; other site
216591022902	GTP/Mg2+ binding site [chemical binding]; other site
216591022903	Switch I region; other site
216591022904	G2 box; other site
216591022905	G3 box; other site
216591022906	Switch II region; other site
216591022907	G4 box; other site
216591022908	G5 box; other site
216591022909	selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several...; Region: selB_II; cd03696
216591022910	This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements:...; Region: selB_III; cd04094
216591022911	Elongation factor SelB, winged helix; Region: SelB-wing_2; pfam09106
216591022912	Elongation factor SelB, winged helix; Region: SelB-wing_3; pfam09107
216591022913	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 1e-31
216591022914	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022915	PS00301 GTP-binding elongation factors signature.
216591022916	HMMPfam hit to PF03144, Elongation factor Tu domain, score 1.1e-14
216591022917	BcenGI12
216591022918	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
216591022919	active site
216591022920	catalytic residues [active]
216591022921	DNA binding site [nucleotide binding]
216591022922	Int/Topo IB signature motif; other site
216591022923	HMMPfam hit to PF00589, Phage integrase family, score 5.6e-12
216591022924	Predicted helix-turn-helix motif with score 1186.000, SD 3.23 at aa 20-41, sequence HTAREIATKLGTSTSFVQCFLD
216591022925	Protein of unknown function (DUF1643); Region: DUF1643; pfam07799
216591022926	HMMPfam hit to PF07799, Protein of unknown function (DUF1643), score 6.6e-16
216591022927	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591022928	non-specific DNA binding site [nucleotide binding]; other site
216591022929	salt bridge; other site
216591022930	sequence-specific DNA binding site [nucleotide binding]; other site
216591022931	HMMPfam hit to PF01381, Helix-turn-helix, score 3.4e-06
216591022932	Predicted helix-turn-helix motif with score 1425.000, SD 4.04 at aa 16-37, sequence MTLEDVADATGSSKSYVWELES
216591022933	Methyltransferase domain; Region: Methyltransf_25; pfam13649
216591022934	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
216591022935	1 probable transmembrane helix predicted for BCAM1042 by TMHMM2.0 at aa 20-42
216591022936	1 probable transmembrane helix predicted for BCAM1043 by TMHMM2.0 at aa 25-47
216591022937	PS00011 Vitamin K-dependent carboxylation domain.
216591022938	Fic/DOC family; Region: Fic; cl00960
216591022939	HMMPfam hit to PF05012, Prophage maintenance system killer protein, score 1.5e-32
216591022940	RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651
216591022941	Reverse transcriptase (RNA-dependent DNA polymerase); Region: RVT_1; pfam00078
216591022942	putative active site [active]
216591022943	putative NTP binding site [chemical binding]; other site
216591022944	putative nucleic acid binding site [nucleotide binding]; other site
216591022945	HMMPfam hit to PF00078, Reverse transcriptase (RNA-dependent DNA pol, score 1.5e-62
216591022946	EBS1?
216591022947	Group II intron - EBS2
216591022948	IBS1
216591022949	IBS2
216591022950	Predicted helix-turn-helix motif with score 1076.000, SD 2.85 at aa 21-42, sequence GGAAHIAREIGKEPNYISRALY
216591022951	Predicted helix-turn-helix motif with score 1105.000, SD 2.95 at aa 17-38, sequence PDRKRAAEALGWDPSEVSRFLN
216591022952	Protein of unknown function (DUF1376); Region: DUF1376; cl01531
216591022953	PS00294 Prenyl group binding site (CAAX box).
216591022954	Endodeoxyribonuclease RusA; Region: RusA; pfam05866
216591022955	HMMPfam hit to PF05866, Endodeoxyribonuclease RusA, score 6.5e-21
216591022956	Predicted helix-turn-helix motif with score 1439.000, SD 4.09 at aa 23-44, sequence YTAHDLARSAGVPLSTVRHLLA
216591022957	Predicted helix-turn-helix motif with score 1307.000, SD 3.64 at aa 106-127, sequence LTRASAAYCSGFSHYRVRRAII
216591022958	Predicted helix-turn-helix motif with score 1307.000, SD 3.64 at aa 135-156, sequence CDLSEIADECGAHRNTVSKQNA
216591022959	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5410
216591022960	Terminase-like family; Region: Terminase_6; pfam03237
216591022961	Phage-related terminase [General function prediction only]; Region: COG5362; cl02216
216591022962	HMMPfam hit to PF03237, Terminase-like family, score 1.3e-68
216591022963	phage-related protein, HI1409 family; Region: phge_rel_HI1409; TIGR01555
216591022964	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
216591022965	Phage Mu protein F like protein; Region: Phage_Mu_F; cl10072
216591022966	HMMPfam hit to PF04233, Phage Mu protein F like protein, score 1.7e-06
216591022967	Uncharacterized protein conserved in bacteria (DUF2213); Region: DUF2213; pfam09979
216591022968	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4834
216591022969	Uncharacterized protein conserved in bacteria (DUF2184); Region: DUF2184; pfam09950
216591022970	1 probable transmembrane helix predicted for BCAM1068 by TMHMM2.0 at aa 7-24
216591022971	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022972	Protein of unknown function (DUF4054); Region: DUF4054; pfam13262
216591022973	Protein of unknown function (DUF3383); Region: DUF3383; pfam11863
216591022974	PS00962 Ribosomal protein S2 signature 1.
216591022975	Protein of unknown function (DUF3277); Region: DUF3277; pfam11681
216591022976	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Region: Glucosaminidase; pfam01832
216591022977	PS00017 ATP/GTP-binding site motif A (P-loop).
216591022978	HMMPfam hit to PF01832, Mannosyl-glycoprotein endo-beta-N-ace, score 9e-11
216591022979	3 probable transmembrane helices predicted for BCAM1081 by TMHMM2.0 at aa 25-47, 57-79 and 134-156
216591022980	PS00216 Sugar transport proteins signature 1.
216591022981	Bacteriophage Mu Gp45 protein; Region: Phage_Mu_Gp45; cl15410
216591022982	1 probable transmembrane helix predicted for BCAM1083 by TMHMM2.0 at aa 212-234
216591022983	Protein of unknown function (DUF2612); Region: DUF2612; pfam11041
216591022984	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022985	Pectate lyase superfamily protein; Region: Pectate_lyase_3; pfam12708
216591022986	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022987	1 probable transmembrane helix predicted for BCAM1091 by TMHMM2.0 at aa 87-109
216591022988	lysozyme_like domain.  This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases; Region: lysozyme_like; cl00222
216591022989	catalytic residue [active]
216591022990	HMMPfam hit to PF00182, Chitinase class I, score 0.00061
216591022991	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591022992	Lipase.  Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of...; Region: Lipase; cl14883
216591022993	nucleophilic elbow; other site
216591022994	catalytic triad; other site
216591022995	HMMPfam hit to PF01764, Lipase (class 3), score 3.9e-15
216591022996	PS00120 Lipases, serine active site.
216591022997	2 probable transmembrane helices predicted for BCAM1097 by TMHMM2.0 at aa 19-41 and 51-68
216591022998	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_10; cd04667
216591022999	nudix motif; other site
216591023000	HMMPfam hit to PF00293, NUDIX domain, score 8.2e-25
216591023001	PS00893 mutT domain signature.
216591023002	xanthine permease; Region: pbuX; TIGR03173
216591023003	12 probable transmembrane helices predicted for BCAM1099 by TMHMM2.0 at aa 12-31, 36-53, 58-80, 95-117, 124-146, 161-180, 185-207, 227-249, 317-336, 346-368, 375-392 and 407-426
216591023004	HMMPfam hit to PF00860, Permease family, score 1.6e-119
216591023005	PS01116 Xanthine/uracil permeases family signature.
216591023006	PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.
216591023007	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591023008	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023009	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_like_1; cd08460
216591023010	putative substrate binding pocket [chemical binding]; other site
216591023011	putative dimerization interface [polypeptide binding]; other site
216591023012	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-16
216591023013	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.8e-14
216591023014	PS00044 Bacterial regulatory proteins, lysR family signature.
216591023015	Predicted helix-turn-helix motif with score 1154.000, SD 3.12 at aa 19-40, sequence SSVTGAARRLGLSTSAMSRTLT
216591023016	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591023017	C factor cell-cell signaling protein; Provisional; Region: PRK09009
216591023018	NAD(P) binding site [chemical binding]; other site
216591023019	active site
216591023020	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.8e-07
216591023021	Contains amber stop codon at codon 374. Similar to Ralstonia metallidurans major facilitator superfamily mfs_1 UniProt:Q1LC21 (EMBL:CP000353 (484 aa) fasta scores: E()=2e-136, 78.306% id in 484 aa
216591023022	HMMPfam hit to PF00083, Sugar (and other) transporter score 5.2e-06
216591023023	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4e-33
216591023024	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
216591023025	Glycerol kinase [Energy production and conversion]; Region: GlpK; COG0554
216591023026	nucleotide binding site [chemical binding]; other site
216591023027	HMMPfam hit to PF00370, FGGY family of carbohydrate kinases, N-termi, score 6.5e-31
216591023028	HMMPfam hit to PF02782, FGGY family of carbohydrate kinases, C-termi, score 2.8e-27
216591023029	PS00445 FGGY family of carbohydrate kinases signature 2.
216591023030	Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Region: GlpA; COG0578
216591023031	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591023032	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.5e-52
216591023033	glycolate oxidase, subunit GlcD; Region: glcD; TIGR00387
216591023034	FAD binding domain; Region: FAD_binding_4; pfam01565
216591023035	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591023036	HMMPfam hit to PF01565, FAD binding domain, score 5.6e-38
216591023037	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023038	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 7.8e-29
216591023039	Glycerol-3-phosphate responsive antiterminator; Region: G3P_antiterm; cl00852
216591023040	HMMPfam hit to PF04309, Glycerol-3-phosphate responsive antiterm, score 1.4e-14
216591023041	Uncharacterized conserved protein [Function unknown]; Region: COG1359
216591023042	HMMPfam hit to PF03992, Antibiotic biosynthesis monooxygenase, score 3.1e-19
216591023043	5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor; Region: HVD; cd08193
216591023044	Alcohol dehydrogenase, class IV [Energy production and conversion]; Region: EutG; COG1454
216591023045	putative active site [active]
216591023046	metal binding site [ion binding]; metal-binding site
216591023047	HMMPfam hit to PF00465, Iron-containing alcohol dehydrogenase, score 9.3e-88
216591023048	PS00913 Iron-containing alcohol dehydrogenases signature 1.
216591023049	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591023050	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023051	putative substrate translocation pore; other site
216591023052	12 probable transmembrane helices predicted for BCAM1110 by TMHMM2.0 at aa 7-29, 44-63, 70-89, 94-116, 129-148, 153-175, 203-225, 235-257, 270-289, 294-316, 328-350 and 355-377
216591023053	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023054	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.2e-38
216591023055	ornithine decarboxylase; Provisional; Region: PRK13578
216591023056	Orn/Lys/Arg decarboxylase, N-terminal domain; Region: OKR_DC_1_N; pfam03709
216591023057	Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine...; Region: Orn_deC_like; cd00615
216591023058	homodimer interface [polypeptide binding]; other site
216591023059	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591023060	catalytic residue [active]
216591023061	Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711
216591023062	HMMPfam hit to PF03711, Orn/Lys/Arg decarboxylase, C-terminal doma, score 8.4e-79
216591023063	HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase, major domain, score 1.1e-279
216591023064	PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site.
216591023065	HMMPfam hit to PF03709, Orn/Lys/Arg decarboxylase, N-terminal doma, score 1.2e-14
216591023066	arginine decarboxylase; Provisional; Region: PRK15029
216591023067	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591023068	active site
216591023069	phosphorylation site [posttranslational modification]
216591023070	intermolecular recognition site; other site
216591023071	dimerization interface [polypeptide binding]; other site
216591023072	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591023073	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591023074	catalytic residue [active]
216591023075	Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711
216591023076	HMMPfam hit to PF00072, Response regulator receiver domain, score 0.0015
216591023077	HMMPfam hit to PF03709, Orn/Lys/Arg decarboxylase, N-terminal do, score 6.5e-22
216591023078	HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase, major domain, score 3.3e-215
216591023079	PS00445 FGGY family of carbohydrate kinases signature 2.
216591023080	PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site.
216591023081	HMMPfam hit to PF03711, Orn/Lys/Arg decarboxylase, C-terminal do, score 1.1e-61
216591023082	putrescine transporter; Provisional; Region: potE; PRK10655
216591023083	12 probable transmembrane helices predicted for BCAM1113 by TMHMM2.0 at aa 21-43, 48-70, 103-125, 135-154, 161-183, 198-217, 238-260, 280-302, 334-353, 363-385, 397-416 and 421-443
216591023084	HMMPfam hit to PF00324, Amino acid permease, score 9e-06
216591023085	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023086	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591023087	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023088	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591023089	putative effector binding pocket; other site
216591023090	dimerization interface [polypeptide binding]; other site
216591023091	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.3e-34
216591023092	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-11
216591023093	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
216591023094	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591023095	trimer interface [polypeptide binding]; other site
216591023096	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591023097	Autotransporter adhesin [Intracellular trafficking and secretion / Extracellular structures]; Region: Hia; COG5295
216591023098	Haemagglutinin; Region: HIM; pfam05662
216591023099	Haemagglutinin; Region: HIM; pfam05662
216591023100	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591023101	YadA-like C-terminal region; Region: YadA; pfam03895
216591023102	HMMPfam hit to PF05658, Hep_Hag, score 0.00016
216591023103	HMMPfam hit to PF05658, Hep_Hag, score 0.0017
216591023104	HMMPfam hit to PF05658, Hep_Hag, score 0.00034
216591023105	HMMPfam hit to PF05662, Haemagglutinin, score 4.7e-07
216591023106	HMMPfam hit to PF05662, Haemagglutinin, score 1.8e-05
216591023107	HMMPfam hit to PF05662, Haemagglutinin, score 9.3e-06
216591023108	HMMPfam hit to PF05662, Haemagglutinin, score 2.6e-07
216591023109	HMMPfam hit to PF05658, Hep_Hag, score 1.5e-05
216591023110	HMMPfam hit to PF05662, Haemagglutinin, score 2.9e-07
216591023111	PS00017 ATP/GTP-binding site motif A (P-loop).
216591023112	HMMPfam hit to PF05662, Haemagglutinin, score 2.7e-07
216591023113	HMMPfam hit to PF05658, Hep_Hag, score 7.8e-05
216591023114	HMMPfam hit to PF05662, Haemagglutinin, score 9.7e-08
216591023115	HMMPfam hit to PF05662, Haemagglutinin, score 5.9e-08
216591023116	HMMPfam hit to PF05658, Hep_Hag, score 0.0054
216591023117	HMMPfam hit to PF05662, Haemagglutinin, score 1.2e-05
216591023118	HMMPfam hit to PF05658, Hep_Hag, score 0.016
216591023119	HMMPfam hit to PF05658, Hep_Hag, score 2.7e-05
216591023120	HMMPfam hit to PF05662, Haemagglutinin, score 5.2e-07
216591023121	HMMPfam hit to PF03895, YadA-like C-terminal region, score 1.5e-34
216591023122	Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]; Region: OlmA; COG2913
216591023123	SmpA / OmlA family; Region: SmpA_OmlA; pfam04355
216591023124	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023125	HMMPfam hit to PF04355, SmpA / OmlA family, score 1.9e-30
216591023126	Putative glycolipid-binding; Region: Glycolipid_bind; pfam06475
216591023127	HMMPfam hit to PF06475, Protein of unknown function (DUF1089), score 8.8e-31
216591023128	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591023129	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591023130	substrate binding pocket [chemical binding]; other site
216591023131	membrane-bound complex binding site; other site
216591023132	hinge residues; other site
216591023133	1 probable transmembrane helix predicted for BCAM1118 by TMHMM2.0 at aa 21-43
216591023134	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2343
216591023135	HMMPfam hit to PF04248, Domain of unknown function (DUF427), score 2.9e-40
216591023136	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
216591023137	The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493
216591023138	peptide binding site [polypeptide binding]; other site
216591023139	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 5.5e-84
216591023140	PS01040 Bacterial extracellular solute-binding proteins, family 5 signature.
216591023141	Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: TauD; COG2175
216591023142	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cl00184
216591023143	HMMPfam hit to PF02668, Taurine catabolism dioxygenase TauD, TfdA fa, score 5.8e-94
216591023144	PS00092 N-6 Adenine-specific DNA methylases signature.
216591023145	Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: TauD; COG2175
216591023146	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cl00184
216591023147	HMMPfam hit to PF02668, Taurine catabolism dioxygenase TauD, TfdA fa, score 1.1e-108
216591023148	Predicted helix-turn-helix motif with score 1027.000, SD 2.68 at aa 233-254, sequence LSAQDSAHLLQVFHEHVTRLEN
216591023149	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591023150	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591023151	Walker A/P-loop; other site
216591023152	ATP binding site [chemical binding]; other site
216591023153	Q-loop/lid; other site
216591023154	ABC transporter signature motif; other site
216591023155	Walker B; other site
216591023156	D-loop; other site
216591023157	H-loop/switch region; other site
216591023158	HMMPfam hit to PF00005, ABC transporter score 1.3e-55
216591023159	PS00211 ABC transporters family signature.
216591023160	PS00017 ATP/GTP-binding site motif A (P-loop).
216591023161	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591023162	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591023163	dimer interface [polypeptide binding]; other site
216591023164	putative PBP binding loops; other site
216591023165	ABC-ATPase subunit interface; other site
216591023166	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.6e-19
216591023167	5 probable transmembrane helices predicted for BCAM1124 by TMHMM2.0 at aa 24-46, 84-106, 121-143, 184-206 and 236-258
216591023168	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591023169	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591023170	ABC-ATPase subunit interface; other site
216591023171	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.5e-27
216591023172	7 probable transmembrane helices predicted for BCAM1125 by TMHMM2.0 at aa 29-51, 90-109, 124-143, 150-168, 188-210, 215-234 and 244-263
216591023173	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591023174	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
216591023175	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591023176	Protein of unknown function (DUF2029); Region: DUF2029; pfam09594
216591023177	8 probable transmembrane helices predicted for BCAM1127 by TMHMM2.0 at aa 25-47, 122-144, 156-178, 198-220, 227-249, 290-312, 341-360 and 380-402
216591023178	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714
216591023179	Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187
216591023180	Ligand binding site; other site
216591023181	Putative Catalytic site; other site
216591023182	DXD motif; other site
216591023183	2 probable transmembrane helices predicted for BCAM1128 by TMHMM2.0 at aa 235-257 and 272-294
216591023184	HMMPfam hit to PF00535, Glycosyl transferase family, score 3.6e-22
216591023185	Protein of unknown function (DUF2591); Region: DUF2591; cl11584
216591023186	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
216591023187	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591023188	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023189	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591023190	dimerization interface [polypeptide binding]; other site
216591023191	substrate binding pocket [chemical binding]; other site
216591023192	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-23
216591023193	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.1e-18
216591023194	Predicted helix-turn-helix motif with score 1411.000, SD 3.99 at aa 19-40, sequence LHFARAAEALDMAPPALTRQIQ
216591023195	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591023196	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023197	putative substrate translocation pore; other site
216591023198	14 probable transmembrane helices predicted for BCAM1132 by TMHMM2.0 at aa 26-48, 63-85, 92-114, 118-140, 153-175, 180-202, 215-234, 239-261, 281-303, 318-340, 345-367, 371-390, 417-439 and 493-515
216591023199	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.1e-54
216591023200	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023201	PS00216 Sugar transport proteins signature 1.
216591023202	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591023203	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023204	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591023205	dimerization interface [polypeptide binding]; other site
216591023206	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.4e-21
216591023207	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.2e-19
216591023208	Predicted helix-turn-helix motif with score 1188.000, SD 3.23 at aa 39-60, sequence RTVSRAAVRLNMSQPATSAALK
216591023209	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
216591023210	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase, score 7.9e-06
216591023211	uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain; Region: SLC-NCS1sbd_u1; cd11555
216591023212	Permease for cytosine/purines, uracil, thiamine, allantoin; Region: Transp_cyt_pur; pfam02133
216591023213	Na binding site [ion binding]; other site
216591023214	putative substrate binding site [chemical binding]; other site
216591023215	11 probable transmembrane helices predicted for BCAM1135 by TMHMM2.0 at aa 80-102, 122-144, 172-194, 207-224, 244-266, 279-301, 334-356, 369-386, 390-412, 446-468 and 472-489
216591023216	HMMPfam hit to PF02133, Permease for cytosine/purines, uracil,, score 9.1e-69
216591023217	Protein of unknown function (DUF3005); Region: DUF3005; pfam11448
216591023218	Domain of unknown function (DUF4397); Region: DUF4397; pfam14344
216591023219	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023220	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591023221	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023222	putative substrate translocation pore; other site
216591023223	12 probable transmembrane helices predicted for BCAM1138 by TMHMM2.0 at aa 24-41, 64-86, 93-112, 118-140, 152-174, 184-206, 254-276, 286-308, 320-337, 342-364, 377-399 and 409-428
216591023224	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.9e-48
216591023225	MarR family; Region: MarR_2; cl17246
216591023226	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591023227	HMMPfam hit to PF01047, MarR family, score 8.6e-08
216591023228	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591023229	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591023230	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591023231	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591023232	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591023233	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 1e-07
216591023234	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591023235	HMMPfam hit to PF01315, Aldehyde oxidase and xanthine dehydroge, score 0.00098
216591023236	Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cl00220
216591023237	Isochorismatase family; Region: Isochorismatase; pfam00857
216591023238	catalytic triad [active]
216591023239	conserved cis-peptide bond; other site
216591023240	HMMPfam hit to PF00857, Isochorismatase family, score 2.5e-09
216591023241	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591023242	Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]; Region: AmpS; COG2309
216591023243	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591023244	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 4.3e-17
216591023245	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
216591023246	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase, score 3.2e-27
216591023247	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591023248	HMMPfam hit to PF01494, FAD binding domain, score 3.2e-09
216591023249	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0017
216591023250	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080
216591023251	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2; pfam00111
216591023252	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591023253	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 3.9e-07
216591023254	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591023255	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 2.6e-30
216591023256	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591023257	Cytochrome c; Region: Cytochrom_C; pfam00034
216591023258	PS00190 Cytochrome c family heme-binding site signature.
216591023259	PS00190 Cytochrome c family heme-binding site signature.
216591023260	HMMPfam hit to PF00034, Cytochrome c, score 0.0016
216591023261	PS00190 Cytochrome c family heme-binding site signature.
216591023262	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023263	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591023264	3-hydroxyisobutyrate dehydrogenase; Region: HIBADH; TIGR01692
216591023265	HMMPfam hit to PF03446, NAD binding domain of 6-phosphoglucona, score 1e-72
216591023266	HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 0.0028
216591023267	PS00895 3-hydroxyisobutyrate dehydrogenase signature.
216591023268	Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085
216591023269	methylmalonic acid semialdehyde dehydrogenase; Region: MMSDH; TIGR01722
216591023270	tetrameric interface [polypeptide binding]; other site
216591023271	NAD binding site [chemical binding]; other site
216591023272	catalytic residues [active]
216591023273	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 7.8e-182
216591023274	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591023275	PS00070 Aldehyde dehydrogenases cysteine active site.
216591023276	shikimate transporter; Provisional; Region: PRK09952
216591023277	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023278	putative substrate translocation pore; other site
216591023279	HMMPfam hit to PF00083, Sugar (and other) transporter score 5.9e-21
216591023280	12 probable transmembrane helices predicted for BCAM1152 by TMHMM2.0 at aa 43-60, 71-93, 100-119, 134-156, 168-190, 200-219, 258-280, 290-312, 321-338, 348-370, 383-405 and 415-437
216591023281	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.9e-23
216591023282	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591023283	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591023284	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023285	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591023286	dimerization interface [polypeptide binding]; other site
216591023287	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-16
216591023288	Predicted helix-turn-helix motif with score 992.000, SD 2.57 at aa 43-64, sequence QRASGAAKRLGVDYTTVARRIR
216591023289	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-36
216591023290	5 probable transmembrane helices predicted for BCAM1154 by TMHMM2.0 at aa 4-26, 43-65, 159-181, 194-216 and 231-253
216591023291	2-haloalkanoic acid dehalogenase, type II; Region: HAD_type_II; TIGR01428
216591023292	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591023293	motif II; other site
216591023294	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1e-17
216591023295	Isochorismatase family; Region: Isochorismatase; pfam00857
216591023296	YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them; Region: YcaC_related; cd01012
216591023297	catalytic triad [active]
216591023298	dimer interface [polypeptide binding]; other site
216591023299	conserved cis-peptide bond; other site
216591023300	HMMPfam hit to PF00857, Isochorismatase family, score 1.4e-08
216591023301	LysR family transcriptional regulator; Provisional; Region: PRK14997
216591023302	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023303	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_4; cd08473
216591023304	putative effector binding pocket; other site
216591023305	putative dimerization interface [polypeptide binding]; other site
216591023306	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.1e-18
216591023307	Predicted helix-turn-helix motif with score 1591.000, SD 4.61 at aa 22-43, sequence GGFTQAGRALDVPKSTLSRRIA
216591023308	PS00044 Bacterial regulatory proteins, lysR family signature.
216591023309	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.8e-41
216591023310	Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]; Region: AslA; COG3119
216591023311	Sulfatase; Region: Sulfatase; cl17466
216591023312	HMMPfam hit to PF00884, Sulfatase, score 6.6e-17
216591023313	pca operon transcription factor PcaQ; Region: TF_pcaQ; TIGR02424
216591023314	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023315	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591023316	dimerization interface [polypeptide binding]; other site
216591023317	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.8e-18
216591023318	Predicted helix-turn-helix motif with score 1679.000, SD 4.91 at aa 51-72, sequence RSFARTSEAASITQPALSKWLR
216591023319	PS00044 Bacterial regulatory proteins, lysR family signature.
216591023320	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.2e-21
216591023321	FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203
216591023322	GAF domain; Region: GAF; pfam01590
216591023323	PAS fold; Region: PAS; pfam00989
216591023324	PAS domain; Region: PAS; smart00091
216591023325	putative active site [active]
216591023326	heme pocket [chemical binding]; other site
216591023327	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591023328	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591023329	metal binding site [ion binding]; metal-binding site
216591023330	active site
216591023331	I-site; other site
216591023332	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591023333	HMMPfam hit to PF01590, GAF domain, score 3.2e-11
216591023334	HMMPfam hit to PF00989, PAS fold, score 0.00059
216591023335	HMMPfam hit to PF00990, GGDEF domain, score 1.2e-52
216591023336	HMMPfam hit to PF00563, EAL domain, score 2.4e-125
216591023337	Response regulator receiver domain; Region: Response_reg; pfam00072
216591023338	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591023339	active site
216591023340	phosphorylation site [posttranslational modification]
216591023341	intermolecular recognition site; other site
216591023342	dimerization interface [polypeptide binding]; other site
216591023343	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591023344	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591023345	metal binding site [ion binding]; metal-binding site
216591023346	active site
216591023347	I-site; other site
216591023348	HMMPfam hit to PF00990, GGDEF domain, score 1.8e-63
216591023349	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.7e-14
216591023350	chemotaxis-specific methylesterase; Provisional; Region: PRK12555
216591023351	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591023352	active site
216591023353	phosphorylation site [posttranslational modification]
216591023354	intermolecular recognition site; other site
216591023355	CheB methylesterase; Region: CheB_methylest; pfam01339
216591023356	HMMPfam hit to PF01339, CheB methylesterase, score 4.9e-66
216591023357	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.9e-13
216591023358	Protein of unknown function (DUF969); Region: DUF969; pfam06149
216591023359	HMMPfam hit to PF06149, Protein of unknown function (DUF969), score 1.3e-136
216591023360	4 probable transmembrane helices predicted for BCAM1165 by TMHMM2.0 at aa 13-35, 55-74, 94-116 and 190-212
216591023361	Predicted membrane protein [Function unknown]; Region: COG3817
216591023362	Protein of unknown function (DUF979); Region: DUF979; pfam06166
216591023363	HMMPfam hit to PF06166, Protein of unknown function (DUF979), score 3.2e-166
216591023364	8 probable transmembrane helices predicted for BCAM1166 by TMHMM2.0 at aa 7-24, 44-66, 95-117, 127-149, 170-192, 207-229, 250-272 and 295-314
216591023365	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023366	Protein of unknown function (DUF2891); Region: DUF2891; pfam11199
216591023367	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591023368	IclR helix-turn-helix domain; Region: HTH_IclR; cl17605
216591023369	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591023370	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 3.5e-25
216591023371	HMMPfam hit to PF08279, HTH domain, score 0.0043
216591023372	Predicted helix-turn-helix motif with score 1455.000, SD 4.14 at aa 36-57, sequence YTLSQLAARLHIPKATLLRLIE
216591023373	choline dehydrogenase; Validated; Region: PRK02106
216591023374	putative FAD-binding dehydrogenase; Reviewed; Region: PRK12834
216591023375	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591023376	HMMPfam hit to PF00732, GMC oxidoreductase, score 2.3e-108
216591023377	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023378	PS00624 GMC oxidoreductases signature 2.
216591023379	HMMPfam hit to PF05199, GMC oxidoreductase, score 7.6e-49
216591023380	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591023381	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023382	putative substrate translocation pore; other site
216591023383	HMMPfam hit to PF00083, Sugar (and other) transporter score 7e-11
216591023384	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.9e-15
216591023385	12 probable transmembrane helices predicted for BCAM1171 by TMHMM2.0 at aa 5-27, 42-64, 73-95, 110-132, 139-161, 171-193, 232-254, 264-286, 293-315, 320-339, 360-382 and 386-405
216591023386	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591023387	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591023388	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 6.7e-68
216591023389	gamma-aminobutyrate permease; Region: GABAperm; TIGR01773
216591023390	HMMPfam hit to PF00324, Amino acid permease, score 6.6e-130
216591023391	12 probable transmembrane helices predicted for BCAM1173 by TMHMM2.0 at aa 21-40, 44-66, 95-117, 132-154, 166-188, 203-225, 248-270, 285-307, 338-360, 365-387, 408-430 and 437-454
216591023392	PS00218 Amino acid permeases signature.
216591023393	Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243
216591023394	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
216591023395	molybdopterin cofactor binding site; other site
216591023396	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
216591023397	Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243
216591023398	The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is...; Region: MopB_CT_2; cd02783
216591023399	putative molybdopterin cofactor binding site; other site
216591023400	HMMPfam hit to PF04879, Molybdopterin oxidoreductase Fe4S4 do, score 1.2e-18
216591023401	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 2.6e-27
216591023402	Predicted helix-turn-helix motif with score 1005.000, SD 2.61 at aa 338-359, sequence CTPEWAADITGIAADTIRRLAR
216591023403	PS00215 Mitochondrial energy transfer proteins signature.
216591023404	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 3e-09
216591023405	Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]; Region: HybA; COG0437
216591023406	4Fe-4S binding domain; Region: Fer4; pfam00037
216591023407	PS00190 Cytochrome c family heme-binding site signature.
216591023408	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 9.1e-09
216591023409	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591023410	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023411	DMSO reductase anchor subunit (DmsC); Region: DmsC; cl17519
216591023412	HMMPfam hit to PF04976, DMSO reductase anchor subunit (DmsC), score 6.4e-12
216591023413	8 probable transmembrane helices predicted for BCAM1176 by TMHMM2.0 at aa 7-29, 44-66, 87-109, 114-136, 149-171, 175-197, 251-273 and 278-300
216591023414	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023415	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023416	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591023417	IclR helix-turn-helix domain; Region: HTH_IclR; cl17605
216591023418	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591023419	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 5e-32
216591023420	Predicted helix-turn-helix motif with score 1134.000, SD 3.05 at aa 25-46, sequence VSLADLARDVDIPKASLHRMLA
216591023421	Cobaltochelatase CobS subunit N terminal; Region: CobS_N; pfam12556
216591023422	cobaltochelatase, CobS subunit; Region: PD_CobS; TIGR01650
216591023423	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
216591023424	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 0.00024
216591023425	HMMPfam hit to PF07726, ATPase family associated with various cellul, score 8.1e-05
216591023426	PS00017 ATP/GTP-binding site motif A (P-loop).
216591023427	Cobalamin biosynthesis protein CobT; Region: CobT; pfam06213
216591023428	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
216591023429	metal ion-dependent adhesion site (MIDAS); other site
216591023430	HMMPfam hit to PF06213, Cobalamin biosynthesis protein CobT, score 1.9e-19
216591023431	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
216591023432	8 probable transmembrane helices predicted for BCAM1180 by TMHMM2.0 at aa 7-29, 39-61, 73-92, 102-121, 134-156, 166-188, 197-216 and 231-253
216591023433	HMMPfam hit to PF01925, Domain of unknown function DUF81, score 4.8e-07
216591023434	Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl17212
216591023435	HMMPfam hit to PF01515, Phosphate acetyl/butaryl transferase, score 3.2e-132
216591023436	sulfoacetaldehyde acetyltransferase; Validated; Region: PRK07525
216591023437	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591023438	PYR/PP interface [polypeptide binding]; other site
216591023439	dimer interface [polypeptide binding]; other site
216591023440	TPP binding site [chemical binding]; other site
216591023441	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591023442	Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the...; Region: TPP_Xsc_like; cd02013
216591023443	TPP-binding site; other site
216591023444	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 4e-49
216591023445	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 1.2e-26
216591023446	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 4.4e-36
216591023447	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591023448	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 9.3e-07
216591023449	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591023450	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591023451	DNA-binding site [nucleotide binding]; DNA binding site
216591023452	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591023453	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591023454	homodimer interface [polypeptide binding]; other site
216591023455	catalytic residue [active]
216591023456	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.8e-05
216591023457	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 8.8e-18
216591023458	Predicted helix-turn-helix motif with score 1035.000, SD 2.71 at aa 46-67, sequence PSSRELADQLGVARNTVVLAYQ
216591023459	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591023460	Coenzyme A binding pocket [chemical binding]; other site
216591023461	putative phosphonoacetaldehyde dehydrogenase; Region: PhnAcAld_DH; TIGR03250
216591023462	Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like; Region: ALDH_PhpJ; cd07146
216591023463	NAD(P) binding site [chemical binding]; other site
216591023464	catalytic residues [active]
216591023465	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 2.2e-179
216591023466	PS00017 ATP/GTP-binding site motif A (P-loop).
216591023467	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591023468	PS00070 Aldehyde dehydrogenases cysteine active site.
216591023469	Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; Region: Fiu; COG4774
216591023470	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591023471	N-terminal plug; other site
216591023472	ligand-binding site [chemical binding]; other site
216591023473	HMMPfam hit to PF00593, TonB dependent receptor, score 1.2e-30
216591023474	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 5e-21
216591023475	L-asparaginase II; Region: Asparaginase_II; pfam06089
216591023476	HMMPfam hit to PF06089, L-asparaginase II, score 2e-142
216591023477	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023478	transcriptional activator TtdR; Provisional; Region: PRK09801
216591023479	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591023480	putative effector binding pocket; other site
216591023481	dimerization interface [polypeptide binding]; other site
216591023482	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.2e-38
216591023483	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.4e-16
216591023484	PS00044 Bacterial regulatory proteins, lysR family signature.
216591023485	Predicted helix-turn-helix motif with score 1748.000, SD 5.14 at aa 26-47, sequence GSFSAVAKEMHVSTSTVARKVT
216591023486	aspartate ammonia-lyase; Provisional; Region: aspA; PRK12273
216591023487	Aspartase; Region: Aspartase; cd01357
216591023488	active sites [active]
216591023489	tetramer interface [polypeptide binding]; other site
216591023490	HMMPfam hit to PF00206, Lyase, score 5.8e-153
216591023491	PS00163 Fumarate lyases signature.
216591023492	Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]; Region: AnsP; COG1113
216591023493	HMMPfam hit to PF00324, Amino acid permease, score 3.3e-143
216591023494	12 probable transmembrane helices predicted for BCAM1191 by TMHMM2.0 at aa 42-61, 71-93, 114-136, 151-173, 178-200, 226-248, 269-291, 306-328, 358-380, 384-406, 427-449 and 453-475
216591023495	PS00218 Amino acid permeases signature.
216591023496	putative hydrolase; Provisional; Region: PRK11460
216591023497	HMMPfam hit to PF02230, Phospholipase/Carboxylesterase, score 1.7e-07
216591023498	Virulence-associated protein and related proteins [Function unknown]; Region: VagC; COG4456
216591023499	HMMPfam hit to PF04014, SpoVT / AbrB like domain, score 2.6e-05
216591023500	PIN domain of ribonucleases (toxins), VapC and FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus horikoshii protein PH0500, and other similar bacterial and archaeal homologs; Region: PIN_VapC-FitB; cd09881
216591023501	oligomeric interface; other site
216591023502	putative active site [active]
216591023503	homodimer interface [polypeptide binding]; other site
216591023504	HMMPfam hit to PF01850, PIN domain, score 1.2e-20
216591023505	Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_1; pfam12729
216591023506	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591023507	dimerization interface [polypeptide binding]; other site
216591023508	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Region: PAC; smart00086
216591023509	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
216591023510	putative binding surface; other site
216591023511	active site
216591023512	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591023513	ATP binding site [chemical binding]; other site
216591023514	Mg2+ binding site [ion binding]; other site
216591023515	G-X-G motif; other site
216591023516	2 probable transmembrane helices predicted for BCAM1195 by TMHMM2.0 at aa 5-27 and 184-206
216591023517	HMMPfam hit to PF00672, HAMP domain, score 3.2e-14
216591023518	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.6e-12
216591023519	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591023520	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
216591023521	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591023522	putative CheW interface [polypeptide binding]; other site
216591023523	1 probable transmembrane helix predicted for BCAM1196 by TMHMM2.0 at aa 5-27
216591023524	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 0.0012
216591023525	Chemotaxis phosphatase CheX; Region: CheX; pfam13690
216591023526	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591023527	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
216591023528	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591023529	active site
216591023530	phosphorylation site [posttranslational modification]
216591023531	intermolecular recognition site; other site
216591023532	dimerization interface [polypeptide binding]; other site
216591023533	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.5e-25
216591023534	Protein of unknown function (DUF3592); Region: DUF3592; pfam12158
216591023535	2 probable transmembrane helices predicted for BCAM1200 by TMHMM2.0 at aa 27-49 and 121-143
216591023536	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591023537	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023538	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591023539	dimerization interface [polypeptide binding]; other site
216591023540	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.4e-40
216591023541	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6e-17
216591023542	Predicted helix-turn-helix motif with score 1268.000, SD 3.51 at aa 16-37, sequence GTLRGAAAQLNVDQATVGRRIA
216591023543	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591023544	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023545	putative substrate translocation pore; other site
216591023546	14 probable transmembrane helices predicted for BCAM1202 by TMHMM2.0 at aa 28-50, 65-87, 94-116, 120-142, 155-177, 182-204, 217-239, 244-263, 284-306, 316-338, 351-373, 378-400, 421-438 and 443-462
216591023547	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.4e-55
216591023548	enoyl-CoA hydratase; Validated; Region: PRK08139
216591023549	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591023550	substrate binding site [chemical binding]; other site
216591023551	oxyanion hole (OAH) forming residues; other site
216591023552	trimer interface [polypeptide binding]; other site
216591023553	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 2e-36
216591023554	alanine racemase; Reviewed; Region: PRK13340
216591023555	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827
216591023556	active site
216591023557	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
216591023558	substrate binding site [chemical binding]; other site
216591023559	catalytic residues [active]
216591023560	dimer interface [polypeptide binding]; other site
216591023561	HMMPfam hit to PF00842, Alanine racemase, C-terminal domain, score 1.4e-64
216591023562	HMMPfam hit to PF01168, Alanine racemase, N-terminal domain, score 2.8e-72
216591023563	PS00395 Alanine racemase pyridoxal-phosphate attachment site.
216591023564	MAPEG family; Region: MAPEG; cl09190
216591023565	4 probable transmembrane helices predicted for BCAM1205 by TMHMM2.0 at aa 5-22, 54-71, 81-103 and 105-122
216591023566	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591023567	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023568	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591023569	dimerization interface [polypeptide binding]; other site
216591023570	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.8e-11
216591023571	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-17
216591023572	PS00044 Bacterial regulatory proteins, lysR family signature.
216591023573	Predicted helix-turn-helix motif with score 1762.000, SD 5.19 at aa 20-41, sequence GGFARAAAELNVSTSAVSHQIR
216591023574	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
216591023575	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
216591023576	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591023577	Walker A/P-loop; other site
216591023578	ATP binding site [chemical binding]; other site
216591023579	Q-loop/lid; other site
216591023580	ABC transporter signature motif; other site
216591023581	Walker B; other site
216591023582	D-loop; other site
216591023583	H-loop/switch region; other site
216591023584	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
216591023585	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591023586	Walker A/P-loop; other site
216591023587	ATP binding site [chemical binding]; other site
216591023588	Q-loop/lid; other site
216591023589	ABC transporter signature motif; other site
216591023590	Walker B; other site
216591023591	D-loop; other site
216591023592	H-loop/switch region; other site
216591023593	9 probable transmembrane helices predicted for BCAM1207 by TMHMM2.0 at aa 13-35, 50-72, 132-154, 158-177, 626-648, 658-680, 733-755, 759-781 and 853-875
216591023594	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 8.7e-06
216591023595	HMMPfam hit to PF00005, ABC transporter score 1.6e-61
216591023596	PS00017 ATP/GTP-binding site motif A (P-loop).
216591023597	PS00211 ABC transporters family signature.
216591023598	HMMPfam hit to PF00005, ABC transporter score 3.9e-65
216591023599	PS00017 ATP/GTP-binding site motif A (P-loop).
216591023600	PS00211 ABC transporters family signature.
216591023601	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591023602	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591023603	substrate binding pocket [chemical binding]; other site
216591023604	membrane-bound complex binding site; other site
216591023605	hinge residues; other site
216591023606	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.4e-86
216591023607	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591023608	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591023609	dimer interface [polypeptide binding]; other site
216591023610	conserved gate region; other site
216591023611	putative PBP binding loops; other site
216591023612	ABC-ATPase subunit interface; other site
216591023613	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 7.7e-26
216591023614	4 probable transmembrane helices predicted for BCAM1209 by TMHMM2.0 at aa 21-43, 67-84, 91-113 and 189-211
216591023615	glutamine ABC transporter ATP-binding protein; Reviewed; Region: glnQ; PRK09493
216591023616	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591023617	Walker A/P-loop; other site
216591023618	ATP binding site [chemical binding]; other site
216591023619	Q-loop/lid; other site
216591023620	ABC transporter signature motif; other site
216591023621	Walker B; other site
216591023622	D-loop; other site
216591023623	H-loop/switch region; other site
216591023624	HMMPfam hit to PF00005, ABC transporter score 1.4e-65
216591023625	PS00017 ATP/GTP-binding site motif A (P-loop).
216591023626	PS00211 ABC transporters family signature.
216591023627	Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; Region: AAT; pfam03417
216591023628	HMMPfam hit to PF03417, Acyl-coenzyme A:6-aminopenicillanic acid acy, score 3.8e-50
216591023629	hypothetical protein; Provisional; Region: PRK07483
216591023630	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591023631	inhibitor-cofactor binding pocket; inhibition site
216591023632	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591023633	catalytic residue [active]
216591023634	HMMPfam hit to PF00202, Aminotransferase class-III, score 2e-107
216591023635	PS00196 Type-1 copper (blue) proteins signature.
216591023636	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591023637	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
216591023638	1 probable transmembrane helix predicted for BCAM1213 by TMHMM2.0 at aa 150-172
216591023639	Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases [Posttranslational modification, protein turnover, chaperones]; Region: COG3555
216591023640	HMMPfam hit to PF05118, Aspartyl/Asparaginyl beta-hydroxylase, score 3.7e-80
216591023641	1 probable transmembrane helix predicted for BCAM1214 by TMHMM2.0 at aa 279-298
216591023642	1 probable transmembrane helix predicted for BCAM1215 by TMHMM2.0 at aa 7-29
216591023643	alkyl hydroperoxide reductase subunit F; Provisional; Region: PRK15317
216591023644	Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction...; Region: AhpF_NTD_N; cd02974
216591023645	catalytic residue [active]
216591023646	TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then...; Region: AhpF_NTD_C; cd03026
216591023647	catalytic residues [active]
216591023648	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591023649	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591023650	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 1.6e-46
216591023651	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 6.2e-23
216591023652	PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site.
216591023653	peroxiredoxin; Region: AhpC; TIGR03137
216591023654	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
216591023655	dimer interface [polypeptide binding]; other site
216591023656	decamer (pentamer of dimers) interface [polypeptide binding]; other site
216591023657	catalytic triad [active]
216591023658	peroxidatic and resolving cysteines [active]
216591023659	HMMPfam hit to PF00578, AhpC/TSA family, score 5.9e-97
216591023660	HMMPfam hit to PF08534, Redoxin, score 2.7e-08
216591023661	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591023662	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023663	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591023664	dimerization interface [polypeptide binding]; other site
216591023665	substrate binding pocket [chemical binding]; other site
216591023666	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.4e-28
216591023667	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.5e-14
216591023668	PS00044 Bacterial regulatory proteins, lysR family signature.
216591023669	Predicted helix-turn-helix motif with score 1454.000, SD 4.14 at aa 26-47, sequence GSVTAAAGELDITPSAVSHQLQ
216591023670	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591023671	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591023672	dimerization interface [polypeptide binding]; other site
216591023673	ligand binding site [chemical binding]; other site
216591023674	HMMPfam hit to PF01094, Receptor family ligand binding region, score 1e-40
216591023675	L-2-amino-thiazoline-4-carboxylic acid hydrolase; Region: ATC_hydrolase; pfam14196
216591023676	allantoate amidohydrolase; Reviewed; Region: PRK12891
216591023677	M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884
216591023678	active site
216591023679	metal binding site [ion binding]; metal-binding site
216591023680	dimer interface [polypeptide binding]; other site
216591023681	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 8.3e-40
216591023682	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 2.4e-06
216591023683	PS00216 Sugar transport proteins signature 1.
216591023684	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591023685	Cytochrome c; Region: Cytochrom_C; pfam00034
216591023686	HMMPfam hit to PF00034, Cytochrome c, score 0.0013
216591023687	PS00190 Cytochrome c family heme-binding site signature.
216591023688	1 probable transmembrane helix predicted for BCAM1223 by TMHMM2.0 at aa 7-29
216591023689	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
216591023690	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
216591023691	glutaminase active site [active]
216591023692	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
216591023693	dimer interface [polypeptide binding]; other site
216591023694	active site
216591023695	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
216591023696	dimer interface [polypeptide binding]; other site
216591023697	active site
216591023698	HMMPfam hit to PF01380, SIS domain, score 4.7e-22
216591023699	HMMPfam hit to PF01380, SIS domain, score 2e-34
216591023700	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 1.5e-26
216591023701	PS00443 Glutamine amidotransferases class-II active site.
216591023702	2 probable transmembrane helices predicted for BCAM1225 by TMHMM2.0 at aa 20-42 and 52-74
216591023703	N-glycosyltransferase; Provisional; Region: PRK11204
216591023704	CESA_like is  the cellulose synthase superfamily; Region: CESA_like; cd06423
216591023705	DXD motif; other site
216591023706	4 probable transmembrane helices predicted for BCAM1226 by TMHMM2.0 at aa 13-35, 300-322, 335-357 and 377-399
216591023707	HMMPfam hit to PF00535, Glycosyl transferase family, score 3.4e-27
216591023708	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB; Region: deacetyl_PgaB; TIGR03938
216591023709	N-terminal putative catalytic polysaccharide deacetylase domain of bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, and similar proteins; Region: CE4_PgaB_5s; cd10964
216591023710	putative active site [active]
216591023711	putative metal binding site [ion binding]; other site
216591023712	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 5.5e-24
216591023713	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023714	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Region: PGA_TPR_OMP; TIGR03939
216591023715	1 probable transmembrane helix predicted for BCAM1229 by TMHMM2.0 at aa 25-42
216591023716	cell density-dependent motility repressor; Provisional; Region: PRK10082
216591023717	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023718	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591023719	dimerization interface [polypeptide binding]; other site
216591023720	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.5e-20
216591023721	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.6e-15
216591023722	PS00044 Bacterial regulatory proteins, lysR family signature.
216591023723	Predicted helix-turn-helix motif with score 1288.000, SD 3.57 at aa 16-37, sequence KSFSRAARHRHLTQSAFSRRIA
216591023724	Uncharacterized conserved protein [Function unknown]; Region: COG2308
216591023725	HMMPfam hit to PF04169, Domain of unknown function (DUF404), score 1.9e-176
216591023726	HMMPfam hit to PF04174, Domain of unknown function (DUF407), score 3.3e-88
216591023727	A predicted alpha-helical domain with a conserved ER motif; Region: Alpha-E; pfam04168
216591023728	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2307
216591023729	HMMPfam hit to PF04168, Bacterial domain of unknown function (DUF403, score 4.8e-136
216591023730	Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]; Region: COG1305
216591023731	Bacterial transglutaminase-like N-terminal region; Region: Bact_transglu_N; pfam08379
216591023732	Transglutaminase-like superfamily; Region: Transglut_core; cl17362
216591023733	HMMPfam hit to PF08379, Bacterial transglutaminase-like N-ter, score 7.3e-27
216591023734	Bacterial transglutaminase-like N-terminal region; Region: Bact_transglu_N; pfam08379
216591023735	Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]; Region: COG1305
216591023736	Transglutaminase-like superfamily; Region: Transglut_core; pfam01841
216591023737	Putative amidoligase enzyme (DUF2126); Region: DUF2126; pfam09899
216591023738	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4196
216591023739	HMMPfam hit to PF08379, Bacterial transglutaminase-like N-ter, score 1.2e-32
216591023740	HMMPfam hit to PF01841, Transglutaminase-like superfamily, score 1.7e-22
216591023741	A circularly permuted ATPgrasp; Region: CP_ATPgrasp_1; pfam04174
216591023742	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2307
216591023743	A predicted alpha-helical domain with a conserved ER motif; Region: Alpha-E; pfam04168
216591023744	HMMPfam hit to PF04169, Domain of unknown function (DUF404), score 2.4e-103
216591023745	HMMPfam hit to PF04174, Domain of unknown function (DUF407), score 1.2e-19
216591023746	HMMPfam hit to PF04168, Bacterial domain of unknown function (DUF403, score 8.6e-09
216591023747	Bacterial transglutaminase-like N-terminal region; Region: Bact_transglu_N; pfam08379
216591023748	Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]; Region: COG1305
216591023749	Transglutaminase-like superfamily; Region: Transglut_core; pfam01841
216591023750	HMMPfam hit to PF08379, Bacterial transglutaminase-like N-ter, score 1e-32
216591023751	HMMPfam hit to PF01841, Transglutaminase-like superfamily, score 3.4e-23
216591023752	proline iminopeptidase, Neisseria-type subfamily; Region: pro_imino_pep_1; TIGR01249
216591023753	homoserine O-acetyltransferase; Provisional; Region: metX; cl17114
216591023754	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3.9e-27
216591023755	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591023756	HMMPfam hit to PF01757, Acyltransferase family, score 3e-27
216591023757	10 probable transmembrane helices predicted for BCAM1241 by TMHMM2.0 at aa 13-35, 45-64, 85-107, 146-168, 175-197, 202-221, 234-253, 263-285, 298-315 and 325-344
216591023758	Protein of unknown function (DUF1311); Region: DUF1311; cl01530
216591023759	HMMPfam hit to PF07007, Protein of unknown function (DUF1311), score 3.5e-06
216591023760	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591023761	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591023762	catalytic residue [active]
216591023763	HMMPfam hit to PF00266, Aminotransferase class-V, score 2.3e-10
216591023764	HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.0012
216591023765	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591023766	phosphonopyruvate decarboxylase; Region: Ppyr-DeCO2ase; TIGR03297
216591023767	PYR/PP interface [polypeptide binding]; other site
216591023768	dimer interface [polypeptide binding]; other site
216591023769	TPP binding site [chemical binding]; other site
216591023770	Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as...; Region: TPP_PpyrDC; cd03371
216591023771	TPP-binding site; other site
216591023772	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 6.8e-11
216591023773	PS00187 Thiamine pyrophosphate enzymes signature.
216591023774	Phosphoenolpyruvate phosphomutase; Region: PEP_mutase; pfam13714
216591023775	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
216591023776	tetramer interface [polypeptide binding]; other site
216591023777	active site
216591023778	Mg2+/Mn2+ binding site [ion binding]; other site
216591023779	Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline; Region: PC_cytidylyltransferase; cd02523
216591023780	active site
216591023781	metal-binding site
216591023782	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591023783	Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline; Region: PC_cytidylyltransferase; cd02523
216591023784	active site
216591023785	metal-binding site
216591023786	Uncharacterized protein family (UPF0104); Region: UPF0104; cl04219
216591023787	5 probable transmembrane helices predicted for BCAM1247 by TMHMM2.0 at aa 5-27, 37-59, 115-137, 152-171 and 221-243
216591023788	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy_3; pfam13640
216591023789	HMMPfam hit to PF03171, 2OG-Fe(II) oxygenase superfamily, score 0.0041
216591023790	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; pfam01066
216591023791	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 0.00091
216591023792	4 probable transmembrane helices predicted for BCAM1249 by TMHMM2.0 at aa 49-71, 99-118, 125-147 and 188-210
216591023793	PS00379 CDP-alcohol phosphatidyltransferases signature.
216591023794	Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550
216591023795	succinate CoA transferase; Region: YgfH_subfam; TIGR03458
216591023796	Acetyl-CoA hydrolase/transferase C-terminal domain; Region: AcetylCoA_hyd_C; pfam13336
216591023797	HMMPfam hit to PF02550, Acetyl-CoA hydrolase/transferase, score 7.3e-145
216591023798	Interrupted by IS element after codon 62
216591023799	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.9e-59
216591023800	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591023801	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591023802	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591023803	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591023804	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591023805	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591023806	MarR family; Region: MarR_2; pfam12802
216591023807	HMMPfam hit to PF01047, MarR family, score 5.3e-15
216591023808	Predicted helix-turn-helix motif with score 1368.000, SD 3.85 at aa 50-71, sequence MNQARLAEWLEITPISLTRLLD
216591023809	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591023810	Sel1-like repeats; Region: SEL1; smart00671
216591023811	Sel1-like repeats; Region: SEL1; smart00671
216591023812	Sel1-like repeats; Region: SEL1; smart00671
216591023813	Sel1-like repeats; Region: SEL1; smart00671
216591023814	Sel1-like repeats; Region: SEL1; smart00671
216591023815	1 probable transmembrane helix predicted for BCAM1255 by TMHMM2.0 at aa 12-34
216591023816	HMMPfam hit to PF08238, Sel1 repeat, score 3.1e-11
216591023817	HMMPfam hit to PF08238, Sel1 repeat, score 1.1e-10
216591023818	HMMPfam hit to PF08238, Sel1 repeat, score 2.9e-09
216591023819	HMMPfam hit to PF08238, Sel1 repeat, score 7.6e-12
216591023820	HMMPfam hit to PF08238, Sel1 repeat, score 7.5e-11
216591023821	HMMPfam hit to PF08238, Sel1 repeat, score 1.3e-12
216591023822	HMMPfam hit to PF08238, Sel1 repeat, score 0.24
216591023823	Protein of unknown function (DUF2938); Region: DUF2938; pfam11158
216591023824	4 probable transmembrane helices predicted for BCAM1256 by TMHMM2.0 at aa 10-27, 70-92, 107-129 and 142-164
216591023825	Cu(I)-responsive transcriptional regulator; Region: CueR; TIGR02044
216591023826	Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily; Region: HTH_MerR-like_sg6; cd04781
216591023827	DNA binding residues [nucleotide binding]
216591023828	putative dimer interface [polypeptide binding]; other site
216591023829	putative metal binding residues [ion binding]; other site
216591023830	Predicted helix-turn-helix motif with score 1567.000, SD 4.52 at aa 8-29, sequence LDIADVARRTGLPASTLRYYEE
216591023831	HMMPfam hit to PF00376, MerR family regulatory protein, score 2.1e-11
216591023832	RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; Region: Rel-Spo_like; cl11966
216591023833	Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979
216591023834	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
216591023835	RNA polymerase sigma factor RpoD, C-terminal domain; Region: RpoD_Cterm; TIGR02393
216591023836	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591023837	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
216591023838	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591023839	DNA binding residues [nucleotide binding]
216591023840	HMMPfam hit to PF04545, Sigma-70, region, score 2e-14
216591023841	Predicted helix-turn-helix motif with score 1485.000, SD 4.24 at aa 466-487, sequence DTYDAIAQDAGMSRERVRQIEK
216591023842	HMMPfam hit to PF04539, Sigma-70 region, score 4.1e-20
216591023843	HMMPfam hit to PF04542, Sigma-70 region, score 2.3e-28
216591023844	PS00715 Sigma-70 factors family signature 1.
216591023845	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591023846	HMMPfam hit to PF00140, Sigma-70 factor, region, score 5.3e-08
216591023847	HMMPfam hit to PF03979, Sigma-70 factor, region, score 5.5e-09
216591023848	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023849	Uncharacterized protein with a bacterial SH3 domain homologue [Function unknown]; Region: COG4991
216591023850	Bacterial SH3 domain; Region: SH3_3; pfam08239
216591023851	2 probable transmembrane helices predicted for BCAM1261 by TMHMM2.0 at aa 5-23 and 94-116
216591023852	HMMPfam hit to PF06347, Bacterial SH3 domain, score 0.0038
216591023853	HMMPfam hit to PF08239, Bacterial SH3 domain, score 3.7e-05
216591023854	dihydroxy-acid dehydratase; Provisional; Region: PRK12448
216591023855	HMMPfam hit to PF00920, Dehydratase family, score 0
216591023856	PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2.
216591023857	PS00017 ATP/GTP-binding site motif A (P-loop).
216591023858	PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1.
216591023859	Malate/L-lactate dehydrogenases [Energy production and conversion]; Region: COG2055
216591023860	HMMPfam hit to PF02615, Malate/L-lactate dehydrogenase, score 1.9e-53
216591023861	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591023862	NAD-dependent aldehyde dehydrogenases [Energy production and conversion]; Region: PutA; COG1012
216591023863	Alpha-Ketoglutaric Semialdehyde Dehydrogenase; Region: ALDH_KGSADH; cd07129
216591023864	dimer interface [polypeptide binding]; other site
216591023865	NADP binding site [chemical binding]; other site
216591023866	catalytic residues [active]
216591023867	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 7e-15
216591023868	Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531
216591023869	Spore germination protein; Region: Spore_permease; cl17796
216591023870	14 probable transmembrane helices predicted for BCAM1265 by TMHMM2.0 at aa 30-52, 62-84, 105-127, 149-171, 178-200, 220-242, 255-277, 300-322, 356-378, 383-405, 418-440, 444-466, 478-500 and 510-529
216591023871	HMMPfam hit to PF00324, Amino acid permease, score 5e-07
216591023872	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
216591023873	Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408
216591023874	inhibitor site; inhibition site
216591023875	active site
216591023876	dimer interface [polypeptide binding]; other site
216591023877	catalytic residue [active]
216591023878	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 1.9e-50
216591023879	hydroxyproline-2-epimerase; Provisional; Region: PRK13970
216591023880	hydroxyproline-2-epimerase; Provisional; Region: PRK13971
216591023881	HMMPfam hit to PF05544, Proline racemase, score 1.3e-141
216591023882	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591023883	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591023884	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.9e-79
216591023885	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023886	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_4; pfam13510
216591023887	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 0.012
216591023888	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox_2; pfam07992
216591023889	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 1.1e-23
216591023890	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591023891	pca operon transcription factor PcaQ; Region: TF_pcaQ; TIGR02424
216591023892	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591023893	dimerization interface [polypeptide binding]; other site
216591023894	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.8e-36
216591023895	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1e-18
216591023896	PS00044 Bacterial regulatory proteins, lysR family signature.
216591023897	Predicted helix-turn-helix motif with score 1380.000, SD 3.89 at aa 22-43, sequence GNLSQSAVALATTQPALSKWLK
216591023898	gentisate 1,2-dioxygenase; Region: gentisate_1_2; TIGR02272
216591023899	Cupin domain; Region: Cupin_2; pfam07883
216591023900	HMMPfam hit to PF07883, Cupin domain, score 1.3e-20
216591023901	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
216591023902	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591023903	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 4.9e-61
216591023904	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 1.6e-12
216591023905	GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens; Region: GST_N_Zeta; cd03042
216591023906	maleylacetoacetate isomerase; Region: maiA; TIGR01262
216591023907	C-terminal domain interface [polypeptide binding]; other site
216591023908	GSH binding site (G-site) [chemical binding]; other site
216591023909	putative dimer interface [polypeptide binding]; other site
216591023910	C-terminal, alpha helical domain of Class Zeta Glutathione S-transferases; Region: GST_C_Zeta; cd03191
216591023911	dimer interface [polypeptide binding]; other site
216591023912	maleylacetoacetate (MAA) substrate binding site (H site) [chemical binding]; other site
216591023913	N-terminal domain interface [polypeptide binding]; other site
216591023914	salicylate hydroxylase; Provisional; Region: PRK08163
216591023915	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591023916	HMMPfam hit to PF01494, FAD binding domain, score 2.5e-08
216591023917	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 4.5e-06
216591023918	1 probable transmembrane helix predicted for BCAM1274 by TMHMM2.0 at aa 11-28
216591023919	benzoate transport; Region: 2A0115; TIGR00895
216591023920	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023921	putative substrate translocation pore; other site
216591023922	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023923	12 probable transmembrane helices predicted for BCAM1275 by TMHMM2.0 at aa 24-46, 61-83, 90-112, 116-138, 150-172, 177-199, 260-282, 292-314, 326-348, 352-374, 387-409 and 413-435
216591023924	HMMPfam hit to PF00083, Sugar (and other) transporter score 2.8e-06
216591023925	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.5e-48
216591023926	PS00217 Sugar transport proteins signature 2.
216591023927	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591023928	dimerization interface [polypeptide binding]; other site
216591023929	putative DNA binding site [nucleotide binding]; other site
216591023930	putative Zn2+ binding site [ion binding]; other site
216591023931	HMMPfam hit to PF01022, Bacterial regulatory protein, arsR family, score 1.8e-12
216591023932	Predicted helix-turn-helix motif with score 1064.000, SD 2.81 at aa 46-67, sequence CCVSDLEARLDIHQPTLSQQLG
216591023933	Predicted transporter component [General function prediction only]; Region: COG2391
216591023934	4 probable transmembrane helices predicted for BCAM1277 by TMHMM2.0 at aa 10-32, 53-72, 82-104 and 117-139
216591023935	HMMPfam hit to PF04143, YeeE/YedE family (DUF395), score 2.4e-21
216591023936	4 probable transmembrane helices predicted for BCAM1278 by TMHMM2.0 at aa 5-23, 38-60, 84-106 and 116-133
216591023937	HMMPfam hit to PF04143, YeeE/YedE family (DUF395), score 3.4e-12
216591023938	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591023939	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591023940	DNA-binding site [nucleotide binding]; DNA binding site
216591023941	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591023942	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591023943	homodimer interface [polypeptide binding]; other site
216591023944	catalytic residue [active]
216591023945	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 8.9e-13
216591023946	PS00041 Bacterial regulatory proteins, araC family signature.
216591023947	HMMPfam hit to PF00155, Aminotransferase class I and II, score 8.6e-08
216591023948	Cytochrome c peroxidase [Inorganic ion transport and metabolism]; Region: MauG; COG1858
216591023949	PS00190 Cytochrome c family heme-binding site signature.
216591023950	HMMPfam hit to PF03150, Di-haem cytochrome c peroxidase, score 1.7e-11
216591023951	PS00190 Cytochrome c family heme-binding site signature.
216591023952	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
216591023953	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
216591023954	active site
216591023955	metal binding site [ion binding]; metal-binding site
216591023956	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 1e-13
216591023957	PS00125 Serine/threonine specific protein phosphatases signature.
216591023958	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591023959	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591023960	S-adenosylmethionine binding site [chemical binding]; other site
216591023961	HMMPfam hit to PF05175, Methyltransferase small domain, score 0.00049
216591023962	HMMPfam hit to PF08241, Methyltransferase domain, score 2.2e-26
216591023963	HMMPfam hit to PF08242, Methyltransferase domain, score 1.6e-14
216591023964	3 probable transmembrane helices predicted for BCAM1285 by TMHMM2.0 at aa 10-32, 39-61 and 76-98
216591023965	BCCT family transporter; Region: BCCT; pfam02028
216591023966	HMMPfam hit to PF02028, BCCT family transporter score 1.2e-229
216591023967	12 probable transmembrane helices predicted for BCAM1286 by TMHMM2.0 at aa 16-38, 48-70, 91-113, 147-169, 189-211, 231-253, 265-287, 317-339, 352-371, 412-434, 451-473 and 478-500
216591023968	PS01303 BCCT family of transporters signature.
216591023969	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591023970	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591023971	trimer interface [polypeptide binding]; other site
216591023972	eyelet of channel; other site
216591023973	HMMPfam hit to PF00267, Gram-negative porin, score 3e-05
216591023974	Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]; Region: COG1501
216591023975	Galactose mutarotase-like; Region: Gal_mutarotas_2; pfam13802
216591023976	Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic...; Region: GH31_glycosidase_Aec37; cd06599
216591023977	putative active site [active]
216591023978	putative catalytic site [active]
216591023979	HMMPfam hit to PF01055, Glycosyl hydrolases family, score 5.5e-167
216591023980	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591023981	D-galactonate transporter; Region: 2A0114; TIGR00893
216591023982	putative substrate translocation pore; other site
216591023983	12 probable transmembrane helices predicted for BCAM1289 by TMHMM2.0 at aa 7-24, 47-69, 76-98, 108-127, 134-156, 161-183, 225-247, 262-284, 297-319, 324-346, 359-381 and 386-408
216591023984	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.9e-67
216591023985	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
216591023986	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591023987	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
216591023988	putative active site [active]
216591023989	HMMPfam hit to PF01418, Helix-turn-helix domain, rpiR family, score 0.00036
216591023990	HMMPfam hit to PF01380, SIS domain, score 3.7e-11
216591023991	Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and  L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked...; Region: Ntn_Asparaginase_2_like; cl00635
216591023992	L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta...; Region: Asparaginase_2; cd04701
216591023993	catalytic nucleophile [active]
216591023994	HMMPfam hit to PF01112, Asparaginase, score 5.6e-112
216591023995	glutathione transporter ATP-binding protein; Provisional; Region: PRK10261
216591023996	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591023997	Walker A/P-loop; other site
216591023998	ATP binding site [chemical binding]; other site
216591023999	Q-loop/lid; other site
216591024000	ABC transporter signature motif; other site
216591024001	Walker B; other site
216591024002	D-loop; other site
216591024003	H-loop/switch region; other site
216591024004	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591024005	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591024006	Walker A/P-loop; other site
216591024007	ATP binding site [chemical binding]; other site
216591024008	Q-loop/lid; other site
216591024009	ABC transporter signature motif; other site
216591024010	Walker B; other site
216591024011	D-loop; other site
216591024012	H-loop/switch region; other site
216591024013	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; pfam08352
216591024014	HMMPfam hit to PF00005, ABC transporter score 4.1e-56
216591024015	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024016	PS00211 ABC transporters family signature.
216591024017	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter C-termi, score 5.2e-05
216591024018	HMMPfam hit to PF00005, ABC transporter score 5.4e-63
216591024019	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024020	PS00211 ABC transporters family signature.
216591024021	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter C-termi, score 7.3e-08
216591024022	glutathione ABC transporter substrate-binding protein GsiB; Provisional; Region: PRK15413
216591024023	The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold; Region: PBP2_Ylib_like; cd08499
216591024024	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 5.2e-89
216591024025	glutathione ABC transporter permease GsiC; Provisional; Region: PRK15081
216591024026	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591024027	dimer interface [polypeptide binding]; other site
216591024028	conserved gate region; other site
216591024029	putative PBP binding loops; other site
216591024030	ABC-ATPase subunit interface; other site
216591024031	6 probable transmembrane helices predicted for BCAM1294 by TMHMM2.0 at aa 9-31, 101-123, 135-157, 172-191, 227-249 and 277-299
216591024032	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.7e-48
216591024033	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591024034	glutathione ABC transporter permease GsiD; Provisional; Region: PRK15082
216591024035	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591024036	dimer interface [polypeptide binding]; other site
216591024037	conserved gate region; other site
216591024038	putative PBP binding loops; other site
216591024039	ABC-ATPase subunit interface; other site
216591024040	6 probable transmembrane helices predicted for BCAM1295 by TMHMM2.0 at aa 32-54, 96-118, 131-153, 157-176, 214-236 and 261-283
216591024041	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.2e-52
216591024042	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591024043	L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active...; Region: DmpA; cd02253
216591024044	homodimer interface [polypeptide binding]; other site
216591024045	homotetramer interface [polypeptide binding]; other site
216591024046	active site pocket [active]
216591024047	cleavage site
216591024048	HMMPfam hit to PF03576, Peptidase family T4, score 1.1e-85
216591024049	Peptidase M55, D-aminopeptidase dipeptide-binding protein family; Region: DAP_dppA_1; cd08663
216591024050	SxDxEG motif; other site
216591024051	active site
216591024052	metal binding site [ion binding]; metal-binding site
216591024053	homopentamer interface [polypeptide binding]; other site
216591024054	HMMPfam hit to PF04951, D-aminopeptidase, score 4.3e-53
216591024055	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591024056	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 5.7e-07
216591024057	PS00041 Bacterial regulatory proteins, araC family signature.
216591024058	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00013
216591024059	Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and...; Region: 3,4-PCD_alpha; cd03463
216591024060	heterodimer interface [polypeptide binding]; other site
216591024061	active site
216591024062	HMMPfam hit to PF00775, Dioxygenase, score 0.00053
216591024063	Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and...; Region: 3,4-PCD_beta; cd03464
216591024064	heterodimer interface [polypeptide binding]; other site
216591024065	multimer interface [polypeptide binding]; other site
216591024066	protocatechuate 3,4-dioxygenase, beta subunit; Region: protocat_beta; TIGR02422
216591024067	active site
216591024068	HMMPfam hit to PF00775, Dioxygenase, score 4.1e-89
216591024069	PS00083 Intradiol ring-cleavage dioxygenases signature.
216591024070	Orthopoxvirus protein of unknown function (DUF830); Region: DUF830; cl13998
216591024071	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591024072	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591024073	non-specific DNA binding site [nucleotide binding]; other site
216591024074	salt bridge; other site
216591024075	sequence-specific DNA binding site [nucleotide binding]; other site
216591024076	HMMPfam hit to PF01381, Helix-turn-helix, score 1.7e-09
216591024077	Predicted helix-turn-helix motif with score 1970.000, SD 5.90 at aa 20-41, sequence MTYRDVARALDVSETSVKRLFA
216591024078	PS00215 Mitochondrial energy transfer proteins signature.
216591024079	pca operon transcription factor PcaQ; Region: TF_pcaQ; TIGR02424
216591024080	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591024081	The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold; Region: PBP2_GbpR; cd08435
216591024082	putative dimerization interface [polypeptide binding]; other site
216591024083	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.1e-21
216591024084	Predicted helix-turn-helix motif with score 1203.000, SD 3.28 at aa 25-46, sequence GGVQKAAESLSITQPAVSKTIA
216591024085	PS00044 Bacterial regulatory proteins, lysR family signature.
216591024086	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.8e-39
216591024087	Phage derived protein Gp49-like (DUF891); Region: Gp49; pfam05973
216591024088	HMMPfam hit to PF05973, Phage derived protein Gp49-like (DUF891), score 0.00017
216591024089	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl17200
216591024090	Predicted helix-turn-helix motif with score 1244.000, SD 3.42 at aa 54-75, sequence ITKTAMAARMKTSRAALNRLLD
216591024091	putative transporter; Provisional; Region: PRK11021
216591024092	putative transporter; Provisional; Region: PRK11021
216591024093	11 probable transmembrane helices predicted for BCAM1306 by TMHMM2.0 at aa 13-35, 50-72, 93-115, 130-152, 157-176, 186-208, 229-251, 266-288, 327-344, 354-376 and 389-411
216591024094	HMMPfam hit to PF00324, Amino acid permease, score 2.5e-06
216591024095	HMMPfam hit to PF03845, Spore germination protein, score 0.0011
216591024096	Lhr-like helicases [General function prediction only]; Region: Lhr; COG1201
216591024097	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
216591024098	ATP binding site [chemical binding]; other site
216591024099	putative Mg++ binding site [ion binding]; other site
216591024100	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591024101	nucleotide binding region [chemical binding]; other site
216591024102	ATP-binding site [chemical binding]; other site
216591024103	DEAD/H associated; Region: DEAD_assoc; pfam08494
216591024104	HMMPfam hit to PF08494, DEAD/H associated, score 5.3e-79
216591024105	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 8e-15
216591024106	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 2e-34
216591024107	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591024108	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024109	Predicted membrane-bound metal-dependent hydrolase (DUF457); Region: DUF457; pfam04307
216591024110	5 probable transmembrane helices predicted for BCAM1308 by TMHMM2.0 at aa 9-31, 35-57, 70-89, 93-112 and 132-154
216591024111	Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; COG0405
216591024112	Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019
216591024113	HMMPfam hit to PF01019, Gamma-glutamyltranspeptidase, score 1.7e-230
216591024114	PS00462 Gamma-glutamyltranspeptidase signature.
216591024115	Response regulator with putative antiterminator output domain [Signal transduction mechanisms]; Region: AmiR; COG3707
216591024116	ANTAR domain; Region: ANTAR; pfam03861
216591024117	HMMPfam hit to PF03861, ANTAR domain, score 2.4e-10
216591024118	Periplasmic binding protein; Region: Peripla_BP_6; pfam13458
216591024119	Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family; Region: PBP1_AmiC; cd06357
216591024120	ligand binding site [chemical binding]; other site
216591024121	regulator interaction site; other site
216591024122	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
216591024123	metal ion-dependent adhesion site (MIDAS); other site
216591024124	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591024125	MoxR-like ATPases [General function prediction only]; Region: COG0714
216591024126	Walker A motif; other site
216591024127	ATP binding site [chemical binding]; other site
216591024128	Walker B motif; other site
216591024129	CbbQ/NirQ/NorQ C-terminal; Region: CbbQ_C; pfam08406
216591024130	HMMPfam hit to PF08406, CbbQ/NirQ/NorQ C-terminal, score 2.5e-38
216591024131	HMMPfam hit to PF07728, ATPase family associated with various cellul, score 7e-42
216591024132	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024133	AmiS/UreI family transporter; Region: AmiS_UreI; pfam02293
216591024134	HMMPfam hit to PF02293, AmiS/UreI family transporter score 4.9e-43
216591024135	6 probable transmembrane helices predicted for BCAM1314 by TMHMM2.0 at aa 4-22, 29-51, 56-78, 85-104, 109-128 and 135-157
216591024136	acylamide amidohydrolase; Provisional; Region: amiE; PRK13286
216591024137	aliphatic amidases (class 2 nitrilases); Region: aliphatic_amidase; cd07565
216591024138	multimer interface [polypeptide binding]; other site
216591024139	active site
216591024140	catalytic triad [active]
216591024141	dimer interface [polypeptide binding]; other site
216591024142	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, score 3.1e-42
216591024143	type I secretion outer membrane protein, TolC family; Region: type_I_sec_TolC; TIGR01844
216591024144	HMMPfam hit to PF02321, Outer membrane efflux protein, score 2.9e-19
216591024145	HMMPfam hit to PF02321, Outer membrane efflux protein, score 2e-18
216591024146	PS00228 Tubulin-beta mRNA autoregulation signal.
216591024147	ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]; Region: SunT; COG2274
216591024148	A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various...; Region: Peptidase_C39C; cd02419
216591024149	putative active site [active]
216591024150	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
216591024151	ATP-binding cassette domain of multidrug resistance protein-like transporters; Region: ABCC_MRP_Like; cd03228
216591024152	Walker A/P-loop; other site
216591024153	ATP binding site [chemical binding]; other site
216591024154	Q-loop/lid; other site
216591024155	ABC transporter signature motif; other site
216591024156	Walker B; other site
216591024157	D-loop; other site
216591024158	H-loop/switch region; other site
216591024159	HMMPfam hit to PF03412, Peptidase C39 family, score 9.1e-30
216591024160	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 2.5e-21
216591024161	3 probable transmembrane helices predicted for BCAM1317 by TMHMM2.0 at aa 163-185, 200-222 and 293-315
216591024162	HMMPfam hit to PF00005, ABC transporter score 8.6e-45
216591024163	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024164	PS00211 ABC transporters family signature.
216591024165	Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis; Region: LPLAT; cl17185
216591024166	putative acyl-acceptor binding pocket; other site
216591024167	type I secretion membrane fusion protein, HlyD family; Region: type_I_hlyD; TIGR01843
216591024168	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591024169	1 probable transmembrane helix predicted for BCAM1319 by TMHMM2.0 at aa 39-61
216591024170	PS00543 HlyD family secretion proteins signature.
216591024171	OmpW family; Region: OmpW; cl17427
216591024172	HMMPfam hit to PF03922, OmpW family, score 2.4e-06
216591024173	polyphosphate kinase 2, PA0141 family; Region: PPK2_P_aer; TIGR03707
216591024174	HMMPfam hit to PF03976, Polyphosphate kinase, score 7.1e-170
216591024175	Uncharacterized conserved protein [Function unknown]; Region: COG1739
216591024176	Uncharacterized protein family UPF0029; Region: UPF0029; pfam01205
216591024177	Domain of unknown function (DUF1949); Region: DUF1949; pfam09186
216591024178	HMMPfam hit to PF01205, Uncharacterized protein family UPF0029, score 1.3e-44
216591024179	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591024180	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591024181	dimerization interface [polypeptide binding]; other site
216591024182	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.2e-17
216591024183	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7e-17
216591024184	PS00044 Bacterial regulatory proteins, lysR family signature.
216591024185	Predicted helix-turn-helix motif with score 1385.000, SD 3.90 at aa 20-41, sequence KSFTRAAEVLDTTQSAVSLKIK
216591024186	1 probable transmembrane helix predicted for BCAM1325A by TMHMM2.0 at aa 15-37
216591024187	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; pfam00933
216591024188	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
216591024189	Glycosyl hydrolase family 3 C-terminal domain; Region: Glyco_hydro_3_C; pfam01915
216591024190	Fibronectin type III-like domain; Region: Fn3-like; pfam14310
216591024191	HMMPfam hit to PF01915, Glycosyl hydrolase family 3 C termina, score 1.4e-75
216591024192	HMMPfam hit to PF00933, Glycosyl hydrolase family 3 N termina, score 8.2e-86
216591024193	Pectate lyase superfamily protein; Region: Pectate_lyase_3; pfam12708
216591024194	This CDS appears to have two frameshift mutations
216591024195	Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]; Region: Wza; COG1596
216591024196	Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563
216591024197	SLBB domain; Region: SLBB; pfam10531
216591024198	HMMPfam hit to PF02563, Polysaccharide biosynthesis/export protei, score 2.2e-31
216591024199	1 probable transmembrane helix predicted for BCAM1330 by TMHMM2.0 at aa 24-46
216591024200	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024201	Chain length determinant protein; Region: Wzz; cl15801
216591024202	tyrosine kinase; Provisional; Region: PRK11519
216591024203	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
216591024204	Chain length determinant protein; Region: Wzz; cl15801
216591024205	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
216591024206	HMMPfam hit to PF02706, Chain length determinant protein, score 3.3e-20
216591024207	2 probable transmembrane helices predicted for BCAM1331 by TMHMM2.0 at aa 43-65 and 453-475
216591024208	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024209	12 probable transmembrane helices predicted for BCAM1332 by TMHMM2.0 at aa 48-70, 74-96, 101-123, 138-160, 181-203, 226-248, 255-272, 276-293, 300-322, 422-444, 457-474 and 479-501
216591024210	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591024211	HMMPfam hit to PF01757, Acyltransferase family, score 1.1e-07
216591024212	10 probable transmembrane helices predicted for BCAM1333 by TMHMM2.0 at aa 13-30, 50-72, 88-110, 135-157, 164-183, 198-215, 236-258, 273-290, 297-319 and 329-351
216591024213	exosortase A system-associated hydrolase 1; Region: hydr1_PEP; TIGR03100
216591024214	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
216591024215	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591024216	HMMPfam hit to PF00534, Glycosyl transferases group, score 7.5e-07
216591024217	Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244
216591024218	Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_Wzx_like; cd13128
216591024219	HMMPfam hit to PF01943, Polysaccharide biosynthesis protein, score 9.8e-45
216591024220	10 probable transmembrane helices predicted for BCAM1336 by TMHMM2.0 at aa 7-29, 39-57, 77-99, 114-133, 140-162, 167-189, 288-307, 322-344, 356-378 and 382-404
216591024221	This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the...; Region: GT1_mtfB_like; cd03809
216591024222	Glycosyltransferase Family 4; Region: Glyco_transf_4; pfam13439
216591024223	HMMPfam hit to PF00534, Glycosyl transferases group, score 1.2e-32
216591024224	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591024225	This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides; Region: GT1_cap1E_like; cd03808
216591024226	putative ADP-binding pocket [chemical binding]; other site
216591024227	HMMPfam hit to PF00534, Glycosyl transferases group, score 1.4e-28
216591024228	Disaggregatase related; Region: Disaggr_assoc; pfam08480
216591024229	Right handed beta helix region; Region: Beta_helix; pfam13229
216591024230	1 probable transmembrane helix predicted for BCAM1339 by TMHMM2.0 at aa 13-35
216591024231	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Region: GMP_PMI; TIGR01479
216591024232	GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase; cd02509
216591024233	Substrate binding site; other site
216591024234	Mannose-6-phosphate isomerase; Region: MannoseP_isomer; pfam01050
216591024235	HMMPfam hit to PF01050, Mannose-6-phosphate isomerase, score 4.7e-119
216591024236	HMMPfam hit to PF07883, Cupin domain, score 2e-07
216591024237	HMMPfam hit to PF00483, Nucleotidyl transferase, score 1.3e-76
216591024238	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
216591024239	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
216591024240	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591024241	Walker A motif; other site
216591024242	ATP binding site [chemical binding]; other site
216591024243	Walker B motif; other site
216591024244	arginine finger; other site
216591024245	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591024246	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 6.3e-131
216591024247	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591024248	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591024249	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 2.9e-10
216591024250	Predicted helix-turn-helix motif with score 1778.000, SD 5.24 at aa 428-449, sequence GRVAASARELGVSRATLYRWME
216591024251	Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]; Region: LacZ; COG3250
216591024252	HMMPfam hit to PF00703, Glycosyl hydrolases family 2, immunoglo, score 0.065
216591024253	Domain of unknown function (DUF1839); Region: DUF1839; pfam08893
216591024254	Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent...; Region: Gly_His_Pro_Ser_Thr_tRS_core; cd00670
216591024255	dimer interface [polypeptide binding]; other site
216591024256	motif 1; other site
216591024257	active site
216591024258	motif 2; other site
216591024259	motif 3; other site
216591024260	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591024261	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591024262	Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771
216591024263	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591024264	active site
216591024265	acyl carrier protein; Provisional; Region: PRK07081
216591024266	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 2.3e-09
216591024267	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
216591024268	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
216591024269	ligand binding site [chemical binding]; other site
216591024270	flexible hinge region; other site
216591024271	Crp-like helix-turn-helix domain; Region: HTH_Crp_2; pfam13545
216591024272	Predicted helix-turn-helix motif with score 978.000, SD 2.52 at aa 185-206, sequence VTHSMLAQMLGVRRETVTDAAG
216591024273	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 2.4e-08
216591024274	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
216591024275	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
216591024276	non-specific DNA interactions [nucleotide binding]; other site
216591024277	DNA binding site [nucleotide binding]
216591024278	sequence specific DNA binding site [nucleotide binding]; other site
216591024279	putative cAMP binding site [chemical binding]; other site
216591024280	Undecaprenyl-phosphate glucose phosphotransferase; Region: WcaJ_sugtrans; TIGR03023
216591024281	Bacterial sugar transferase; Region: Bac_transf; pfam02397
216591024282	5 probable transmembrane helices predicted for BCAM1350 by TMHMM2.0 at aa 7-29, 39-58, 71-93, 108-127 and 277-296
216591024283	HMMPfam hit to PF02397, Bacterial sugar transferase, score 3.5e-34
216591024284	DnaK suppressor protein [Signal transduction mechanisms]; Region: DksA; COG1734
216591024285	HMMPfam hit to PF01258, Prokaryotic dksA/traR C4-type zinc finge, score 3.3e-07
216591024286	Nucleotidyltransferase (NT) domain of family X DNA Polymerases; Region: NT_POLXc; cd00141
216591024287	hypothetical protein; Provisional; Region: PRK08609
216591024288	active site
216591024289	primer binding site [nucleotide binding]; other site
216591024290	NTP  binding site [chemical binding]; other site
216591024291	metal binding triad [ion binding]; metal-binding site
216591024292	Polymerase and Histidinol Phosphatase domain of bacterial polymerase X; Region: PHP_PolX; cd07436
216591024293	active site
216591024294	HMMPfam hit to PF02811, PHP domain, score 1.3e-21
216591024295	Alanine dehydrogenase [Amino acid transport and metabolism]; Region: Ald; COG0686
216591024296	Alanine dehydrogenase NAD-binding and catalytic domains; Region: L-AlaDH; cd05305
216591024297	hexamer interface [polypeptide binding]; other site
216591024298	ligand binding site [chemical binding]; other site
216591024299	putative active site [active]
216591024300	NAD(P) binding site [chemical binding]; other site
216591024301	HMMPfam hit to PF01262, Alanine dehydrogenase/PNT, C-terminal dom, score 5.3e-83
216591024302	HMMPfam hit to PF05222, Alanine dehydrogenase/PNT, N-terminal dom, score 7.1e-70
216591024303	Protein of unknown function (DUF3995); Region: DUF3995; pfam13160
216591024304	4 probable transmembrane helices predicted for BCAM1354 by TMHMM2.0 at aa 5-27, 48-67, 77-99 and 120-139
216591024305	RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]; Region: KptA; COG1859
216591024306	Gluconate 2-dehydrogenase subunit 3; Region: Gluconate_2-dh3; pfam13618
216591024307	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024308	Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303
216591024309	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591024310	HMMPfam hit to PF00732, GMC oxidoreductase, score 2.1e-05
216591024311	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024312	Cytochrome c; Region: Cytochrom_C; pfam00034
216591024313	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591024314	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591024315	Cytochrome c; Region: Cytochrom_C; pfam00034
216591024316	1 probable transmembrane helix predicted for BCAM1358 by TMHMM2.0 at aa 20-42
216591024317	PS00190 Cytochrome c family heme-binding site signature.
216591024318	PS00190 Cytochrome c family heme-binding site signature.
216591024319	HMMPfam hit to PF00034, Cytochrome c, score 1.6e-08
216591024320	PS00190 Cytochrome c family heme-binding site signature.
216591024321	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
216591024322	putative cation:proton antiport protein; Provisional; Region: PRK10669
216591024323	TrkA-N domain; Region: TrkA_N; pfam02254
216591024324	11 probable transmembrane helices predicted for BCAM1359 by TMHMM2.0 at aa 5-27, 34-56, 60-82, 87-109, 114-136, 149-171, 191-213, 234-256, 310-332, 339-361 and 376-398
216591024325	HMMPfam hit to PF00999, Sodium/hydrogen exchanger family, score 6.8e-80
216591024326	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024327	HMMPfam hit to PF02254, TrkA-N domain, score 3.3e-25
216591024328	short chain dehydrogenase; Provisional; Region: PRK07074
216591024329	classical (c) SDRs; Region: SDR_c; cd05233
216591024330	NAD(P) binding site [chemical binding]; other site
216591024331	active site
216591024332	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0013
216591024333	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.5e-16
216591024334	Periplasmic binding proteins and sugar binding domain of LacI family; Region: Peripla_BP_1; pfam00532
216591024335	Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily; Region: PBP1_arabinose_binding; cd01540
216591024336	ligand binding site [chemical binding]; other site
216591024337	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 1.3e-45
216591024338	Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768
216591024339	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
216591024340	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
216591024341	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 3.3e-90
216591024342	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024343	HMMPfam hit to PF03717, Penicillin-binding Protein dimerisatio, score 1e-40
216591024344	1 probable transmembrane helix predicted for BCAM1362 by TMHMM2.0 at aa 33-52
216591024345	Protein of unknown function (DUF3564); Region: DUF3564; pfam12087
216591024346	NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370
216591024347	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591024348	NAD(P) binding site [chemical binding]; other site
216591024349	active site
216591024350	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591024351	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 3.3e-05
216591024352	HMMPfam hit to PF07993, Male sterility protein, score 2.2e-13
216591024353	MarR family; Region: MarR_2; cl17246
216591024354	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591024355	HMMPfam hit to PF01047, MarR family, score 1.1e-15
216591024356	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
216591024357	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 6.5e-13
216591024358	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit; Region: HpaG-C-term; TIGR02303
216591024359	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591024360	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 2e-73
216591024361	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Region: HpaE; TIGR02299
216591024362	Human aldehyde dehydrogenase family 8 member A1-like; Region: ALDH_F8_HMSADH; cd07093
216591024363	NAD binding site [chemical binding]; other site
216591024364	catalytic residues [active]
216591024365	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.5e-236
216591024366	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591024367	PS00070 Aldehyde dehydrogenases cysteine active site.
216591024368	The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate; Region: HPCD; cd07370
216591024369	Catalytic LigB subunit of aromatic ring-opening dioxygenase; Region: LigB; pfam02900
216591024370	putative active site [active]
216591024371	putative metal binding site [ion binding]; other site
216591024372	HMMPfam hit to PF02900, Catalytic LigB subunit of aromatic ring-open, score 2.5e-74
216591024373	5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the...; Region: CHMI; cd00580
216591024374	putative substrate binding pocket [chemical binding]; other site
216591024375	trimer interface [polypeptide binding]; other site
216591024376	HMMPfam hit to PF02962, 5-carboxymethyl-2-hydroxymuconate isomerase, score 1.1e-59
216591024377	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
216591024378	HMMPfam hit to PF01689, Hydratase/decarboxylase, score 5.7e-134
216591024379	HpcH/HpaI aldolase/citrate lyase family; Region: HpcH_HpaI; cl17231
216591024380	HMMPfam hit to PF03328, HpcH/HpaI aldolase/citrate lyase family, score 7.3e-107
216591024381	Cupin domain; Region: Cupin_2; cl17218
216591024382	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591024383	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591024384	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.4e-06
216591024385	PS00041 Bacterial regulatory proteins, araC family signature.
216591024386	Predicted helix-turn-helix motif with score 1376.000, SD 3.87 at aa 174-195, sequence RRLEEWAEWAGIGARTMSRRFV
216591024387	NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604
216591024388	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
216591024389	NAD(P) binding site [chemical binding]; other site
216591024390	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 0.00043
216591024391	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 1.5e-12
216591024392	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591024393	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591024394	eyelet of channel; other site
216591024395	trimer interface [polypeptide binding]; other site
216591024396	HMMPfam hit to PF00267, Gram-negative porin, score 7.8e-06
216591024397	ATP-binding cassette domain of the carbohydrate and solute transporters-like; Region: ABC_Carb_Solutes_like; cd03259
216591024398	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
216591024399	Walker A/P-loop; other site
216591024400	ATP binding site [chemical binding]; other site
216591024401	Q-loop/lid; other site
216591024402	ABC transporter signature motif; other site
216591024403	Walker B; other site
216591024404	D-loop; other site
216591024405	H-loop/switch region; other site
216591024406	HMMPfam hit to PF00005, ABC transporter score 5.4e-61
216591024407	PS00211 ABC transporters family signature.
216591024408	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024409	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
216591024410	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591024411	dimer interface [polypeptide binding]; other site
216591024412	conserved gate region; other site
216591024413	ABC-ATPase subunit interface; other site
216591024414	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591024415	dimer interface [polypeptide binding]; other site
216591024416	conserved gate region; other site
216591024417	putative PBP binding loops; other site
216591024418	ABC-ATPase subunit interface; other site
216591024419	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.0021
216591024420	13 probable transmembrane helices predicted for BCAM1378 by TMHMM2.0 at aa 41-63, 96-118, 131-153, 173-195, 233-255, 278-300, 327-349, 392-414, 427-449, 459-476, 511-529, 534-556 and 563-585
216591024421	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591024422	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.4e-15
216591024423	PS00283 Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature.
216591024424	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591024425	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
216591024426	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
216591024427	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 9e-11
216591024428	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591024429	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591024430	DNA-binding site [nucleotide binding]; DNA binding site
216591024431	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591024432	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591024433	homodimer interface [polypeptide binding]; other site
216591024434	catalytic residue [active]
216591024435	HMMPfam hit to PF00155, Aminotransferase class I and II, score 7.9e-07
216591024436	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
216591024437	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 1.2e-09
216591024438	drug resistance transporter, Bcr/CflA subfamily; Region: efflux_Bcr_CflA; TIGR00710
216591024439	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591024440	putative substrate translocation pore; other site
216591024441	12 probable transmembrane helices predicted for BCAM1381 by TMHMM2.0 at aa 12-31, 46-68, 75-97, 101-123, 136-158, 163-185, 214-232, 247-269, 281-303, 308-330, 342-364 and 368-390
216591024442	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.4e-49
216591024443	PS00216 Sugar transport proteins signature 1.
216591024444	transcriptional regulatory protein TctD; Provisional; Region: PRK15479
216591024445	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591024446	active site
216591024447	phosphorylation site [posttranslational modification]
216591024448	intermolecular recognition site; other site
216591024449	dimerization interface [polypeptide binding]; other site
216591024450	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591024451	DNA binding site [nucleotide binding]
216591024452	HMMPfam hit to PF00072, Response regulator receiver domain, score 5.5e-37
216591024453	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.8e-19
216591024454	Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521
216591024455	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cl01054
216591024456	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591024457	dimer interface [polypeptide binding]; other site
216591024458	phosphorylation site [posttranslational modification]
216591024459	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591024460	ATP binding site [chemical binding]; other site
216591024461	Mg2+ binding site [ion binding]; other site
216591024462	G-X-G motif; other site
216591024463	2 probable transmembrane helices predicted for BCAM1383 by TMHMM2.0 at aa 10-29 and 169-191
216591024464	HMMPfam hit to PF08521, Two-component sensor kinase N-terminal, score 3.5e-69
216591024465	HMMPfam hit to PF00672, HAMP domain, score 5.1e-09
216591024466	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1e-15
216591024467	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.5e-37
216591024468	Uncharacterized Fe-S protein [General function prediction only]; Region: COG3217
216591024469	MOSC N-terminal beta barrel domain; Region: MOSC_N; pfam03476
216591024470	MOSC domain; Region: MOSC; pfam03473
216591024471	HMMPfam hit to PF03473, MOSC domain, score 1.5e-16
216591024472	HMMPfam hit to PF03476, MOSC N-terminal beta barrel domain, score 7.8e-49
216591024473	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
216591024474	membrane-bound complex binding site; other site
216591024475	Cytochrome c; Region: Cytochrom_C; pfam00034
216591024476	HMMPfam hit to PF00034, Cytochrome c, score 0.014
216591024477	PS00190 Cytochrome c family heme-binding site signature.
216591024478	2 probable transmembrane helices predicted for BCAM1386 by TMHMM2.0 at aa 60-82 and 89-111
216591024479	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591024480	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591024481	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591024482	Walker A/P-loop; other site
216591024483	ATP binding site [chemical binding]; other site
216591024484	Q-loop/lid; other site
216591024485	ABC transporter signature motif; other site
216591024486	Walker B; other site
216591024487	D-loop; other site
216591024488	H-loop/switch region; other site
216591024489	HMMPfam hit to PF00005, ABC transporter score 6.8e-52
216591024490	PS00211 ABC transporters family signature.
216591024491	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024492	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591024493	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591024494	dimer interface [polypeptide binding]; other site
216591024495	conserved gate region; other site
216591024496	putative PBP binding loops; other site
216591024497	ABC-ATPase subunit interface; other site
216591024498	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 7.6e-12
216591024499	8 probable transmembrane helices predicted for BCAM1388 by TMHMM2.0 at aa 47-69, 84-106, 118-137, 174-196, 209-226, 231-253, 273-295 and 329-351
216591024500	NMT1-like family; Region: NMT1_2; pfam13379
216591024501	NMT1/THI5 like; Region: NMT1; pfam09084
216591024502	hypothetical protein; Provisional; Region: PRK06208
216591024503	active site
216591024504	intersubunit interface [polypeptide binding]; other site
216591024505	Zn2+ binding site [ion binding]; other site
216591024506	HMMPfam hit to PF00596, Class II Aldolase and Adducin N-terminal, score 1e-58
216591024507	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
216591024508	Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094
216591024509	alkanesulfonate monooxygenase, FMNH(2)-dependent; Region: alk_sulf_monoox; TIGR03565
216591024510	dimer interface [polypeptide binding]; other site
216591024511	active site
216591024512	non-prolyl cis peptide bond; other site
216591024513	insertion regions; other site
216591024514	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 5e-08
216591024515	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591024516	Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771
216591024517	Acyl-CoA dehydrogenase; Region: ACAD; cd00567
216591024518	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 8e-07
216591024519	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 0.0036
216591024520	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 5.4e-06
216591024521	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591024522	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591024523	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591024524	dimerization interface [polypeptide binding]; other site
216591024525	HMMPfam hit to PF03466, LysR substrate binding domain, score 6e-29
216591024526	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.3e-19
216591024527	PS00044 Bacterial regulatory proteins, lysR family signature.
216591024528	Predicted helix-turn-helix motif with score 1760.000, SD 5.18 at aa 16-37, sequence QTLSQAAAELGMTQPAITRRVQ
216591024529	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]; Region: COG5553
216591024530	HMMPfam hit to PF05995, Cysteine dioxygenase type I, score 6.2e-06
216591024531	Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative...; Region: 4RHOD_Repeat_1; cd01532
216591024532	active site residue [active]
216591024533	Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic...; Region: 4RHOD_Repeat_2; cd01533
216591024534	active site residue [active]
216591024535	Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative...; Region: 4RHOD_Repeat_3; cd01534
216591024536	active site residue [active]
216591024537	Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative...; Region: 4RHOD_Repeat_4; cd01535
216591024538	active site residue [active]
216591024539	HMMPfam hit to PF00581, Rhodanese-like domain, score 2.1e-12
216591024540	Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]; Region: UgpQ; COG0584
216591024541	Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins; Region: GDPD_ScGlpQ1_like; cd08602
216591024542	putative active site [active]
216591024543	catalytic site [active]
216591024544	putative metal binding site [ion binding]; other site
216591024545	HMMPfam hit to PF03009, Glycerophosphoryl diester phosphodiesterase, score 1.9e-50
216591024546	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024547	Trans-Isoprenyl Diphosphate Synthases, head-to-head; Region: Trans_IPPS_HH; cd00683
216591024548	active site lid residues [active]
216591024549	substrate binding pocket [chemical binding]; other site
216591024550	catalytic residues [active]
216591024551	substrate-Mg2+ binding site; other site
216591024552	aspartate-rich region 1; other site
216591024553	aspartate-rich region 2; other site
216591024554	HMMPfam hit to PF00494, Squalene/phytoene synthase, score 8.7e-11
216591024555	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591024556	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591024557	trimer interface [polypeptide binding]; other site
216591024558	eyelet of channel; other site
216591024559	HMMPfam hit to PF00267, Gram-negative porin, score 2.9e-06
216591024560	Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]; Region: COG1917
216591024561	HMMPfam hit to PF07883, Cupin domain, score 8.2e-11
216591024562	Carboxymuconolactone decarboxylase family; Region: CMD; pfam02627
216591024563	Uncharacterized conserved protein [Function unknown]; Region: COG2128
216591024564	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 3.1e-19
216591024565	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591024566	DNA-binding site [nucleotide binding]; DNA binding site
216591024567	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591024568	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591024569	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591024570	homodimer interface [polypeptide binding]; other site
216591024571	catalytic residue [active]
216591024572	HMMPfam hit to PF00155, Aminotransferase class I and II, score 4.3e-07
216591024573	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 2e-15
216591024574	Predicted helix-turn-helix motif with score 1211.000, SD 3.31 at aa 37-58, sequence PSTRDLAKQLGVSRKTTLDAFE
216591024575	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11074
216591024576	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591024577	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591024578	dimerization interface [polypeptide binding]; other site
216591024579	HMMPfam hit to PF01047, MarR family, score 0.0027
216591024580	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.8e-17
216591024581	Predicted helix-turn-helix motif with score 1466.000, SD 4.18 at aa 17-38, sequence GSLSRAAARLGKAPSTVSHAAR
216591024582	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.7e-20
216591024583	short chain dehydrogenase; Provisional; Region: PRK06500
216591024584	classical (c) SDRs; Region: SDR_c; cd05233
216591024585	NAD(P) binding site [chemical binding]; other site
216591024586	active site
216591024587	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.5e-26
216591024588	PS00061 Short-chain dehydrogenases/reductases family signature.
216591024589	Glycosyl hydrolases family 32; Region: Glyco_32; smart00640
216591024590	Glycosyl hydrolase family 32, beta-fructosidases; Region: GH32_B_Fructosidase; cd08996
216591024591	substrate binding [chemical binding]; other site
216591024592	active site
216591024593	Glycosyl hydrolases family 32 C terminal; Region: Glyco_hydro_32C; pfam08244
216591024594	HMMPfam hit to PF08244, Glycosyl hydrolases family 32 C termi, score 3.3e-15
216591024595	HMMPfam hit to PF00251, Glycosyl hydrolases family 32 N termi, score 5e-135
216591024596	PS00609 Glycosyl hydrolases family 32 active site.
216591024597	Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase; Region: GH68; cd08997
216591024598	active site
216591024599	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591024600	HMMPfam hit to PF02435, Levansucrase/Invertase, score 6.6e-199
216591024601	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591024602	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591024603	DNA binding site [nucleotide binding]
216591024604	domain linker motif; other site
216591024605	Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_AglR_RafR_like; cd06271
216591024606	ligand binding site [chemical binding]; other site
216591024607	Predicted helix-turn-helix motif with score 2162.000, SD 6.55 at aa 3-24, sequence VNLKALSDALGLSRTTVSRALN
216591024608	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 5.9e-12
216591024609	Putative intracellular protease/amidase [General function prediction only]; Region: ThiJ; COG0693
216591024610	Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Region: GATase1_Hsp31_like; cd03141
216591024611	potential catalytic triad [active]
216591024612	conserved cys residue [active]
216591024613	HMMPfam hit to PF01965, DJ-1/PfpI family, score 7.9e-25
216591024614	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591024615	Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis.  Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing...; Region: OYE_YqiM_FMN; cd02932
216591024616	active site
216591024617	FMN binding site [chemical binding]; other site
216591024618	substrate binding site [chemical binding]; other site
216591024619	homotetramer interface [polypeptide binding]; other site
216591024620	catalytic residue [active]
216591024621	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 1.2e-69
216591024622	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628
216591024623	HMMPfam hit to PF01594, Domain of unknown function DUF20, score 4.1e-23
216591024624	9 probable transmembrane helices predicted for BCAM1409 by TMHMM2.0 at aa 20-37, 41-58, 71-93, 176-198, 218-240, 250-272, 277-299, 304-326 and 333-355
216591024625	SmpA / OmlA family; Region: SmpA_OmlA; cl17115
216591024626	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024627	short chain dehydrogenase; Provisional; Region: PRK06523
216591024628	classical (c) SDRs; Region: SDR_c; cd05233
216591024629	NAD(P) binding site [chemical binding]; other site
216591024630	active site
216591024631	HMMPfam hit to PF00106, short chain dehydrogenase, score 9.1e-19
216591024632	Inclusion body protein; Region: PixA; pfam12306
216591024633	Inclusion body protein; Region: PixA; pfam12306
216591024634	Inclusion body protein; Region: PixA; pfam12306
216591024635	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591024636	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591024637	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591024638	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591024639	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 1.1e-12
216591024640	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 5.4e-09
216591024641	Predicted helix-turn-helix motif with score 1162.000, SD 3.14 at aa 196-217, sequence VTLDAICAAADLSPSYLIRAFN
216591024642	PS00041 Bacterial regulatory proteins, araC family signature.
216591024643	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 4.5e-05
216591024644	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591024645	5 probable transmembrane helices predicted for BCAM1416 by TMHMM2.0 at aa 7-29, 39-61, 68-90, 142-164 and 176-193
216591024646	HMMPfam hit to PF01810, LysE type translocator, score 6e-14
216591024647	heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386
216591024648	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cl01054
216591024649	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591024650	dimer interface [polypeptide binding]; other site
216591024651	phosphorylation site [posttranslational modification]
216591024652	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591024653	ATP binding site [chemical binding]; other site
216591024654	Mg2+ binding site [ion binding]; other site
216591024655	G-X-G motif; other site
216591024656	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.7e-25
216591024657	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.6e-17
216591024658	HMMPfam hit to PF00672, HAMP domain, score 1.3e-10
216591024659	2 probable transmembrane helices predicted for BCAM1417 by TMHMM2.0 at aa 10-32 and 156-178
216591024660	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024661	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024662	heavy metal response regulator; Region: cztR_silR_copR; TIGR01387
216591024663	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591024664	active site
216591024665	phosphorylation site [posttranslational modification]
216591024666	intermolecular recognition site; other site
216591024667	dimerization interface [polypeptide binding]; other site
216591024668	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591024669	DNA binding site [nucleotide binding]
216591024670	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1e-21
216591024671	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.2e-36
216591024672	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591024673	HMMPfam hit to PF02321, Outer membrane efflux protein, score 7.7e-39
216591024674	HMMPfam hit to PF02321, Outer membrane efflux protein, score 9.2e-26
216591024675	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024676	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591024677	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591024678	HMMPfam hit to PF00529, HlyD family secretion protein, score 0.00079
216591024679	1 probable transmembrane helix predicted for BCAM1420 by TMHMM2.0 at aa 32-51
216591024680	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
216591024681	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 3.7e-162
216591024682	12 probable transmembrane helices predicted for BCAM1421 by TMHMM2.0 at aa 12-34, 331-353, 360-379, 383-400, 431-453, 468-490, 537-556, 883-905, 912-931, 936-958, 987-1009 and 1019-1041
216591024683	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
216591024684	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
216591024685	ligand binding site [chemical binding]; other site
216591024686	flexible hinge region; other site
216591024687	Crp-like helix-turn-helix domain; Region: HTH_Crp_2; pfam13545
216591024688	Predicted helix-turn-helix motif with score 1923.000, SD 5.74 at aa 233-254, sequence ISQEELGMLVGVSRQRINQALQ
216591024689	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 1.2e-11
216591024690	acyl-CoA synthetase; Validated; Region: PRK08162
216591024691	Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis; Region: ttLC_FACS_AEE21_like; cd12118
216591024692	acyl-activating enzyme (AAE) consensus motif; other site
216591024693	putative active site [active]
216591024694	AMP binding site [chemical binding]; other site
216591024695	putative CoA binding site [chemical binding]; other site
216591024696	HMMPfam hit to PF00501, AMP-binding enzyme, score 3e-97
216591024697	PS00455 Putative AMP-binding domain signature.
216591024698	Cache domain; Region: Cache_1; pfam02743
216591024699	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
216591024700	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591024701	dimer interface [polypeptide binding]; other site
216591024702	putative CheW interface [polypeptide binding]; other site
216591024703	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 1.7e-75
216591024704	HMMPfam hit to PF00672, HAMP domain, score 5e-09
216591024705	2 probable transmembrane helices predicted for BCAM1424 by TMHMM2.0 at aa 15-37 and 327-346
216591024706	Predicted membrane protein [Function unknown]; Region: COG1238
216591024707	4 probable transmembrane helices predicted for BCAM1425 by TMHMM2.0 at aa 7-25, 40-62, 96-115 and 119-141
216591024708	voltage-gated potassium channel; Provisional; Region: PRK10537
216591024709	Ion channel; Region: Ion_trans_2; pfam07885
216591024710	TrkA-N domain; Region: TrkA_N; pfam02254
216591024711	HMMPfam hit to PF02254, TrkA-N domain, score 6e-20
216591024712	7 probable transmembrane helices predicted for BCAM1426 by TMHMM2.0 at aa 11-33, 59-81, 88-107, 111-128, 135-157, 172-191 and 204-226
216591024713	HMMPfam hit to PF07885, Ion channel, score 5.4e-17
216591024714	HMMPfam hit to PF00520, Ion transport protein, score 0.012
216591024715	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591024716	HMMPfam hit to PF01810, LysE type translocator, score 2.8e-19
216591024717	4 probable transmembrane helices predicted for BCAM1427 by TMHMM2.0 at aa 5-27, 39-61, 160-182 and 202-217
216591024718	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591024719	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
216591024720	putative DNA binding site [nucleotide binding]; other site
216591024721	putative Zn2+ binding site [ion binding]; other site
216591024722	AsnC family; Region: AsnC_trans_reg; pfam01037
216591024723	Predicted helix-turn-helix motif with score 1381.000, SD 3.89 at aa 28-49, sequence LSNAELAEQIGMSTTACWNRTR
216591024724	PS00519 Bacterial regulatory proteins, asnC family signature.
216591024725	HMMPfam hit to PF01037, AsnC family, score 1.1e-27
216591024726	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591024727	IclR helix-turn-helix domain; Region: HTH_IclR; pfam09339
216591024728	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591024729	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 4.2e-06
216591024730	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 5.7e-05
216591024731	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
216591024732	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 2e-17
216591024733	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591024734	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591024735	putative substrate translocation pore; other site
216591024736	12 probable transmembrane helices predicted for BCAM1431 by TMHMM2.0 at aa 42-64, 79-101, 108-127, 132-154, 167-189, 202-224, 270-292, 302-324, 336-353, 358-380, 387-409 and 424-446
216591024737	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.5e-53
216591024738	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591024739	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591024740	putative substrate translocation pore; other site
216591024741	12 probable transmembrane helices predicted for BCAM1432 by TMHMM2.0 at aa 29-46, 69-91, 103-125, 129-151, 158-180, 195-214, 261-283, 293-315, 328-345, 349-371, 378-400 and 415-437
216591024742	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1e-51
216591024743	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591024744	Short-chain dehydrogenases of various substrate specificities [General function prediction only]; Region: DltE; COG0300
216591024745	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591024746	NAD(P) binding site [chemical binding]; other site
216591024747	active site
216591024748	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0006
216591024749	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.4e-32
216591024750	PS00061 Short-chain dehydrogenases/reductases family signature.
216591024751	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591024752	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591024753	conserved cys residue [active]
216591024754	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591024755	HMMPfam hit to PF01965, DJ-1/PfpI family, score 2.1e-09
216591024756	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.9e-06
216591024757	Predicted helix-turn-helix motif with score 1807.000, SD 5.34 at aa 226-247, sequence LTVEDLAEAVHLSPRQFSRIFT
216591024758	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 2.9e-06
216591024759	Epoxide hydrolase N terminus; Region: EHN; pfam06441
216591024760	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591024761	HMMPfam hit to PF06441, Epoxide hydrolase N terminus, score 6.2e-47
216591024762	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 0.00089
216591024763	ChrR Cupin-like domain; Region: Cupin_7; pfam12973
216591024764	HMMPfam hit to PF07883, Cupin domain, score 0.0024
216591024765	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591024766	MarR family; Region: MarR_2; cl17246
216591024767	HMMPfam hit to PF01047, MarR family, score 5.6e-08
216591024768	3 probable transmembrane helices predicted for BCAM1438 by TMHMM2.0 at aa 7-29, 44-66 and 79-98
216591024769	H+ Antiporter protein; Region: 2A0121; TIGR00900
216591024770	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591024771	putative substrate translocation pore; other site
216591024772	HMMPfam hit to PF05977, Bacterial protein of unknown function (DUF89, score 2.7e-07
216591024773	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.6e-41
216591024774	8 probable transmembrane helices predicted for BCAM1439 by TMHMM2.0 at aa 84-106, 165-187, 229-248, 263-282, 289-311, 315-337, 349-371 and 381-400
216591024775	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591024776	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591024777	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591024778	dimerization interface [polypeptide binding]; other site
216591024779	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.7e-24
216591024780	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.9e-10
216591024781	Predicted helix-turn-helix motif with score 1203.000, SD 3.28 at aa 33-54, sequence GGMAAAELELNIGISTISRHVK
216591024782	beta alanine--pyruvate transaminase; Provisional; Region: PRK09221
216591024783	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591024784	inhibitor-cofactor binding pocket; inhibition site
216591024785	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591024786	catalytic residue [active]
216591024787	HMMPfam hit to PF00202, Aminotransferase class-III, score 1.6e-121
216591024788	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591024789	Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085
216591024790	methylmalonic acid semialdehyde dehydrogenase; Region: MMSDH; TIGR01722
216591024791	tetrameric interface [polypeptide binding]; other site
216591024792	NAD binding site [chemical binding]; other site
216591024793	catalytic residues [active]
216591024794	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 5.2e-158
216591024795	Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640
216591024796	Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640
216591024797	HMMPfam hit to PF03640, Secreted repeat of unknown function, score 4.3e-17
216591024798	HMMPfam hit to PF03640, Secreted repeat of unknown function, score 4.3e-10
216591024799	EamA-like transporter family; Region: EamA; pfam00892
216591024800	EamA-like transporter family; Region: EamA; pfam00892
216591024801	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.9e-27
216591024802	9 probable transmembrane helices predicted for BCAM1444 by TMHMM2.0 at aa 20-42, 49-66, 81-103, 110-129, 134-153, 197-219, 229-251, 264-283 and 287-304
216591024803	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 3.2e-23
216591024804	Predicted permeases [General function prediction only]; Region: COG0679
216591024805	9 probable transmembrane helices predicted for BCAM1445 by TMHMM2.0 at aa 26-48, 87-109, 124-146, 151-173, 188-210, 217-239, 249-271, 278-300 and 310-332
216591024806	HMMPfam hit to PF03547, Auxin Efflux Carrier, score 8.2e-08
216591024807	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591024808	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591024809	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_2; cd08427
216591024810	putative dimerization interface [polypeptide binding]; other site
216591024811	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-31
216591024812	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.1e-18
216591024813	PS00044 Bacterial regulatory proteins, lysR family signature.
216591024814	Predicted helix-turn-helix motif with score 1578.000, SD 4.56 at aa 16-37, sequence RTFARAGEAIGLTQSAVSLQIK
216591024815	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591024816	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591024817	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591024818	DNA binding residues [nucleotide binding]
216591024819	dimerization interface [polypeptide binding]; other site
216591024820	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 3.6e-19
216591024821	PS00622 Bacterial regulatory proteins, luxR family signature.
216591024822	Predicted helix-turn-helix motif with score 1225.000, SD 3.36 at aa 217-238, sequence NSSKAIAERLAISPETVKVHRR
216591024823	amino acid transporter; Region: 2A0306; TIGR00909
216591024824	HMMPfam hit to PF00324, Amino acid permease, score 5e-06
216591024825	12 probable transmembrane helices predicted for BCAM1449A by TMHMM2.0 at aa 33-55, 59-81, 102-124, 139-161, 166-188, 208-230, 251-273, 305-327, 348-370, 375-397, 410-432 and 442-459
216591024826	L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active...; Region: DmpA; cd02253
216591024827	homodimer interface [polypeptide binding]; other site
216591024828	homotetramer interface [polypeptide binding]; other site
216591024829	active site pocket [active]
216591024830	cleavage site
216591024831	HMMPfam hit to PF03576, Peptidase family T4, score 3.2e-92
216591024832	Fusaric acid resistance protein family; Region: FUSC; pfam04632
216591024833	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591024834	10 probable transmembrane helices predicted for BCAM1452 by TMHMM2.0 at aa 37-59, 86-108, 113-130, 137-159, 169-191, 400-422, 451-473, 480-499, 504-526 and 531-553
216591024835	HMMPfam hit to PF04632, Fusaric acid resistance protein conserved re, score 5.5e-25
216591024836	transcriptional regulator; Provisional; Region: PRK10632
216591024837	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591024838	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591024839	putative effector binding pocket; other site
216591024840	dimerization interface [polypeptide binding]; other site
216591024841	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.5e-15
216591024842	Predicted helix-turn-helix motif with score 1122.000, SD 3.01 at aa 17-38, sequence GSFTAAAQSLNSTTGAMSRAVS
216591024843	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.6e-42
216591024844	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591024845	1 probable transmembrane helix predicted for BCAM1454 by TMHMM2.0 at aa 4-22
216591024846	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591024847	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591024848	trimer interface [polypeptide binding]; other site
216591024849	eyelet of channel; other site
216591024850	HMMPfam hit to PF00267, Gram-negative porin, score 5.1e-05
216591024851	PS00572 Glycosyl hydrolases family 1 active site.
216591024852	Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi; Region: Bact_CD; cd01293
216591024853	cytosine deaminase; Provisional; Region: PRK09230
216591024854	active site
216591024855	HMMPfam hit to PF07969, Amidohydrolase family, score 7.4e-64
216591024856	Putative ClC chloride channel.  Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent...; Region: ClC_like; cd01033
216591024857	Chloride channel protein EriC [Inorganic ion transport and metabolism]; Region: EriC; COG0038
216591024858	putative ion selectivity filter; other site
216591024859	putative pore gating glutamate residue; other site
216591024860	9 probable transmembrane helices predicted for BCAM1458 by TMHMM2.0 at aa 22-44, 78-96, 176-198, 205-224, 239-261, 273-295, 305-327, 340-362 and 372-394
216591024861	HMMPfam hit to PF00654, Voltage gated chloride channel, score 5.6e-09
216591024862	Short chain fatty acid transporter; Region: SCFA_trans; cl17380
216591024863	HMMPfam hit to PF02667, Short chain fatty acid transporter score 2.1e-248
216591024864	10 probable transmembrane helices predicted for BCAM1459 by TMHMM2.0 at aa 20-39, 54-76, 97-119, 139-161, 182-204, 245-262, 275-297, 307-329, 336-358 and 417-439
216591024865	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591024866	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591024867	putative substrate translocation pore; other site
216591024868	12 probable transmembrane helices predicted for BCAM1460 by TMHMM2.0 at aa 23-41, 56-78, 91-113, 123-145, 152-174, 184-206, 256-278, 288-310, 323-340, 344-366, 379-401 and 411-429
216591024869	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.1e-45
216591024870	Prokaryotic protein of unknown function (DUF849); Region: DUF849; pfam05853
216591024871	HMMPfam hit to PF05853, Prokaryotic protein of unknown function (DUF, score 1.7e-170
216591024872	short chain dehydrogenase; Provisional; Region: PRK12829
216591024873	classical (c) SDRs; Region: SDR_c; cd05233
216591024874	NAD(P) binding site [chemical binding]; other site
216591024875	active site
216591024876	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.003
216591024877	PS00196 Type-1 copper (blue) proteins signature.
216591024878	HMMPfam hit to PF00106, short chain dehydrogenase, score 8.7e-25
216591024879	PS00061 Short-chain dehydrogenases/reductases family signature.
216591024880	Transcriptional regulators [Transcription]; Region: GntR; COG1802
216591024881	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl17414
216591024882	FCD domain; Region: FCD; pfam07729
216591024883	HMMPfam hit to PF07729, FCD domain, score 1e-18
216591024884	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 4.1e-15
216591024885	Predicted helix-turn-helix motif with score 1092.000, SD 2.91 at aa 41-62, sequence LSLRSVAEAVGSSTMPVRAALT
216591024886	Domain of unknown function (DUF4285); Region: DUF4285; pfam14113
216591024887	CagZ; Region: CagZ; pfam09053
216591024888	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591024889	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591024890	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591024891	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 1.9e-34
216591024892	Predicted helix-turn-helix motif with score 1596.000, SD 4.62 at aa 34-55, sequence MTLAEVADAAGMTKSSAQRMVY
216591024893	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591024894	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591024895	substrate binding pocket [chemical binding]; other site
216591024896	membrane-bound complex binding site; other site
216591024897	hinge residues; other site
216591024898	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.1e-52
216591024899	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024900	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591024901	dimer interface [polypeptide binding]; other site
216591024902	conserved gate region; other site
216591024903	putative PBP binding loops; other site
216591024904	ABC-ATPase subunit interface; other site
216591024905	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.7e-27
216591024906	3 probable transmembrane helices predicted for BCAM1468 by TMHMM2.0 at aa 19-41, 54-76 and 184-206
216591024907	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591024908	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
216591024909	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591024910	Walker A/P-loop; other site
216591024911	ATP binding site [chemical binding]; other site
216591024912	Q-loop/lid; other site
216591024913	ABC transporter signature motif; other site
216591024914	Walker B; other site
216591024915	D-loop; other site
216591024916	H-loop/switch region; other site
216591024917	HMMPfam hit to PF00005, ABC transporter score 4.2e-67
216591024918	PS00017 ATP/GTP-binding site motif A (P-loop).
216591024919	PS00211 ABC transporters family signature.
216591024920	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591024921	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591024922	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.8e-91
216591024923	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
216591024924	This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core; Region: GT1_WabH_like; cd03811
216591024925	putative ADP-binding pocket [chemical binding]; other site
216591024926	HMMPfam hit to PF00534, Glycosyl transferases group, score 2.1e-44
216591024927	Cytochrome c peroxidase [Inorganic ion transport and metabolism]; Region: MauG; COG1858
216591024928	PS00190 Cytochrome c family heme-binding site signature.
216591024929	HMMPfam hit to PF03150, Di-haem cytochrome c peroxidase, score 6.5e-13
216591024930	PS00190 Cytochrome c family heme-binding site signature.
216591024931	Phosphoesterase family; Region: Phosphoesterase; pfam04185
216591024932	HMMPfam hit to PF04185, Phosphoesterase family, score 7.5e-70
216591024933	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591024934	phosphonate utilization associated putative membrane protein; Region: phn_DUF6; TIGR03340
216591024935	Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910
216591024936	EamA-like transporter family; Region: EamA; pfam00892
216591024937	10 probable transmembrane helices predicted for BCAM1475 by TMHMM2.0 at aa 4-26, 38-57, 61-83, 90-112, 117-135, 148-170, 175-197, 210-232, 242-259 and 268-287
216591024938	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2.9e-11
216591024939	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591024940	AsnC-type helix-turn-helix domain; Region: HTH_AsnC-type; pfam13404
216591024941	putative DNA binding site [nucleotide binding]; other site
216591024942	putative Zn2+ binding site [ion binding]; other site
216591024943	AsnC family; Region: AsnC_trans_reg; pfam01037
216591024944	HMMPfam hit to PF01037, AsnC family, score 7.8e-26
216591024945	aromatic amino acid transporter; Provisional; Region: PRK10238
216591024946	HMMPfam hit to PF00324, Amino acid permease, score 5.7e-147
216591024947	12 probable transmembrane helices predicted for BCAM1477 by TMHMM2.0 at aa 21-40, 44-66, 86-108, 118-140, 153-175, 198-220, 240-262, 277-299, 331-353, 357-379, 399-421 and 426-443
216591024948	PS00218 Amino acid permeases signature.
216591024949	aromatic amino acid aminotransferase; Provisional; Region: PRK09257
216591024950	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591024951	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591024952	homodimer interface [polypeptide binding]; other site
216591024953	catalytic residue [active]
216591024954	HMMPfam hit to PF00155, Aminotransferase class I and II, score 7.2e-113
216591024955	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.
216591024956	Protein of unknown function, DUF488; Region: DUF488; cl01246
216591024957	Protein of unknown function (DUF1488); Region: DUF1488; pfam07369
216591024958	PS00153 ATP synthase gamma subunit signature.
216591024959	fumarate/nitrate reduction transcriptional regulator; Provisional; Region: PRK11161
216591024960	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
216591024961	ligand binding site [chemical binding]; other site
216591024962	flexible hinge region; other site
216591024963	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
216591024964	putative switch regulator; other site
216591024965	non-specific DNA interactions [nucleotide binding]; other site
216591024966	DNA binding site [nucleotide binding]
216591024967	sequence specific DNA binding site [nucleotide binding]; other site
216591024968	putative cAMP binding site [chemical binding]; other site
216591024969	HMMPfam hit to PF00325, Bacterial regulatory proteins, crp famil, score 2.8e-09
216591024970	Predicted helix-turn-helix motif with score 1839.000, SD 5.45 at aa 212-233, sequence MTREEIGCYLGMKLETVSRMFS
216591024971	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 3.3e-15
216591024972	Response regulator receiver domain; Region: Response_reg; pfam00072
216591024973	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591024974	active site
216591024975	phosphorylation site [posttranslational modification]
216591024976	intermolecular recognition site; other site
216591024977	dimerization interface [polypeptide binding]; other site
216591024978	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.6e-19
216591024979	ornithine cyclodeaminase; Validated; Region: PRK07340
216591024980	ornithine cyclodeaminase; Validated; Region: PRK06823; cl17400
216591024981	HMMPfam hit to PF02423, Ornithine cyclodeaminase/mu-crystalli, score 1.1e-11
216591024982	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591024983	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591024984	DNA-binding site [nucleotide binding]; DNA binding site
216591024985	FCD domain; Region: FCD; pfam07729
216591024986	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 3.3e-25
216591024987	PS00043 Bacterial regulatory proteins, gntR family signature.
216591024988	HMMPfam hit to PF07729, FCD domain, score 3.6e-16
216591024989	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591024990	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591024991	dimerization interface [polypeptide binding]; other site
216591024992	ligand binding site [chemical binding]; other site
216591024993	HMMPfam hit to PF01094, Receptor family ligand binding region, score 2.2e-48
216591024994	hydroxyproline-2-epimerase; Provisional; Region: PRK13971
216591024995	Proline racemase; Region: Pro_racemase; pfam05544
216591024996	HMMPfam hit to PF05544, Proline racemase, score 2.9e-130
216591024997	Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]; Region: MrcB; COG0744
216591024998	Transglycosylase; Region: Transgly; pfam00912
216591024999	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
216591025000	1 probable transmembrane helix predicted for BCAM1489 by TMHMM2.0 at aa 45-67
216591025001	HMMPfam hit to PF00912, Transglycosylase, score 5.5e-82
216591025002	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 3.7e-27
216591025003	PilZ domain; Region: PilZ; pfam07238
216591025004	HMMPfam hit to PF07238, PilZ domain, score 1.1e-13
216591025005	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591025006	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3755
216591025007	HMMPfam hit to PF07007, Protein of unknown function (DUF1311), score 4.5e-26
216591025008	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591025009	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591025010	active site
216591025011	phosphorylation site [posttranslational modification]
216591025012	intermolecular recognition site; other site
216591025013	dimerization interface [polypeptide binding]; other site
216591025014	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591025015	DNA binding residues [nucleotide binding]
216591025016	dimerization interface [polypeptide binding]; other site
216591025017	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 1.8e-17
216591025018	Predicted helix-turn-helix motif with score 1561.000, SD 4.50 at aa 164-185, sequence QTLTEIANALCVSAKTVSTYKT
216591025019	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.4e-37
216591025020	PAS domain S-box; Region: sensory_box; TIGR00229
216591025021	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591025022	putative active site [active]
216591025023	heme pocket [chemical binding]; other site
216591025024	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920
216591025025	Histidine kinase; Region: HisKA_3; pfam07730
216591025026	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591025027	ATP binding site [chemical binding]; other site
216591025028	Mg2+ binding site [ion binding]; other site
216591025029	G-X-G motif; other site
216591025030	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 4.9e-18
216591025031	HMMPfam hit to PF07730, Histidine kinase, score 4.6e-18
216591025032	HMMPfam hit to PF08448, PAS fold, score 1.1e-09
216591025033	HMMPfam hit to PF00989, PAS fold, score 8.2e-13
216591025034	2 probable transmembrane helices predicted for BCAM1494 by TMHMM2.0 at aa 24-46 and 303-325
216591025035	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591025036	Ligand Binding Site [chemical binding]; other site
216591025037	HMMPfam hit to PF00582, Universal stress protein family, score 3.9e-27
216591025038	Cupin superfamily (DUF985); Region: Cupin_5; pfam06172
216591025039	HMMPfam hit to PF06172, Cupin superfamily (DUF985), score 2.2e-62
216591025040	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
216591025041	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
216591025042	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125
216591025043	active site residue [active]
216591025044	5 probable transmembrane helices predicted for BCAM1497 by TMHMM2.0 at aa 15-37, 50-72, 104-126, 131-153 and 168-190
216591025045	This CDS appears to have a frameshift mutation at codon 306
216591025046	HMMPfam hit to PF00324, Amino acid permease, score 8.9e-150
216591025047	12 probable transmembrane helices predicted for BCAM1498 by TMHMM2.0 at aa 16-38, 42-64, 84-106, 121-143, 155-177, 197-219, 240-262, 282-304, 331-353, 357-379, 400-422 and 427-449
216591025048	PS00218 Amino acid permeases signature.
216591025049	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591025050	Ligand Binding Site [chemical binding]; other site
216591025051	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591025052	Ligand Binding Site [chemical binding]; other site
216591025053	HMMPfam hit to PF00582, Universal stress protein family, score 1.6e-16
216591025054	Protein of unknown function (DUF3562); Region: DUF3562; pfam12085
216591025055	Cache domain; Region: Cache_1; pfam02743
216591025056	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591025057	dimerization interface [polypeptide binding]; other site
216591025058	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
216591025059	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591025060	dimer interface [polypeptide binding]; other site
216591025061	putative CheW interface [polypeptide binding]; other site
216591025062	2 probable transmembrane helices predicted for BCAM1503 by TMHMM2.0 at aa 10-32 and 271-293
216591025063	HMMPfam hit to PF02743, Cache domain, score 6.1e-21
216591025064	HMMPfam hit to PF00672, HAMP domain, score 2.4e-18
216591025065	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 9.5e-91
216591025066	psp operon transcriptional activator PspF; Region: phageshock_pspF; TIGR02974
216591025067	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591025068	Walker A motif; other site
216591025069	ATP binding site [chemical binding]; other site
216591025070	Walker B motif; other site
216591025071	arginine finger; other site
216591025072	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591025073	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 6.1e-07
216591025074	Predicted helix-turn-helix motif with score 1411.000, SD 3.99 at aa 395-416, sequence GNKPRAAKALGISLKTLYNRLA
216591025075	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591025076	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 4.1e-122
216591025077	HMMPfam hit to PF07728, ATPase family associated with various, score 6.1e-05
216591025078	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591025079	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
216591025080	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591025081	putative active site [active]
216591025082	heme pocket [chemical binding]; other site
216591025083	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591025084	dimer interface [polypeptide binding]; other site
216591025085	phosphorylation site [posttranslational modification]
216591025086	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591025087	ATP binding site [chemical binding]; other site
216591025088	Mg2+ binding site [ion binding]; other site
216591025089	G-X-G motif; other site
216591025090	Response regulator receiver domain; Region: Response_reg; pfam00072
216591025091	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591025092	active site
216591025093	phosphorylation site [posttranslational modification]
216591025094	intermolecular recognition site; other site
216591025095	dimerization interface [polypeptide binding]; other site
216591025096	3 probable transmembrane helices predicted for BCAM1505 by TMHMM2.0 at aa 12-34, 54-76 and 83-105
216591025097	HMMPfam hit to PF00989, PAS fold, score 5.9e-10
216591025098	HMMPfam hit to PF08448, PAS fold, score 0.0028
216591025099	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 8.9e-19
216591025100	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 5.5e-43
216591025101	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.7e-28
216591025102	BON domain; Region: BON; pfam04972
216591025103	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025104	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 2.5e-14
216591025105	2 probable transmembrane helices predicted for BCAM1507 by TMHMM2.0 at aa 63-85 and 90-112
216591025106	Domain of unknown function (DUF4142); Region: DUF4142; pfam13628
216591025107	PRC-barrel domain; Region: PRC; pfam05239
216591025108	HMMPfam hit to PF05239, PRC-barrel domain, score 5.4e-16
216591025109	FOG: CBS domain [General function prediction only]; Region: COG0517
216591025110	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair_9; cd04622
216591025111	HMMPfam hit to PF00571, CBS domain pair, score 5.6e-30
216591025112	Outer membrane protein V [Cell envelope biogenesis, outer membrane]; Region: OmpV; COG3713
216591025113	HMMPfam hit to PF06629, MltA-interacting protein MipA, score 5.1e-40
216591025114	This model contains proteins with the VRR-NUC domain; Region: VRR_NUC; smart00990
216591025115	Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]; Region: DinG; COG1199
216591025116	DEAD_2; Region: DEAD_2; pfam06733
216591025117	Helicase C-terminal domain; Region: Helicase_C_2; pfam13307
216591025118	PS00017 ATP/GTP-binding site motif A (P-loop).
216591025119	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591025120	beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Region: pcaR_pcaU; TIGR02431
216591025121	IclR helix-turn-helix domain; Region: HTH_IclR; cl17605
216591025122	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591025123	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 6.6e-21
216591025124	Predicted helix-turn-helix motif with score 1286.000, SD 3.57 at aa 33-54, sequence MTPTQAAARTGLTRTAARRYLL
216591025125	This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while  RTPC has 3 similar repeats...; Region: EPT_RTPC-like; cl00288
216591025126	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Region: murA; TIGR01072
216591025127	putative active site [active]
216591025128	Predicted restriction endonuclease [Defense mechanisms]; Region: COG3183
216591025129	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
216591025130	active site
216591025131	HMMPfam hit to PF01844, HNH endonuclease, score 1.8e-06
216591025132	shikimate transporter; Provisional; Region: PRK09952
216591025133	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591025134	putative substrate translocation pore; other site
216591025135	HMMPfam hit to PF00083, Sugar (and other) transporter score 1.3e-11
216591025136	12 probable transmembrane helices predicted for BCAM1521 by TMHMM2.0 at aa 25-47, 62-84, 97-119, 129-151, 164-186, 196-215, 250-272, 287-309, 314-336, 341-360, 381-403 and 407-429
216591025137	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.7e-24
216591025138	4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]; Region: COG3185
216591025139	N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS); Region: HPPD_N_like; cd08342
216591025140	dimer interface [polypeptide binding]; other site
216591025141	C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS); Region: HPPD_C_like; cd07250
216591025142	active site
216591025143	Fe binding site [ion binding]; other site
216591025144	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 1.3e-08
216591025145	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591025146	Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN_family; cd02803
216591025147	active site
216591025148	FMN binding site [chemical binding]; other site
216591025149	substrate binding site [chemical binding]; other site
216591025150	putative catalytic residue [active]
216591025151	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 5.7e-37
216591025152	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional; Region: PRK14019
216591025153	3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; pfam00926
216591025154	GTP cyclohydrolase II; Region: GTP_cyclohydro2; pfam00925
216591025155	dimerization interface [polypeptide binding]; other site
216591025156	active site
216591025157	HMMPfam hit to PF00925, GTP cyclohydrolase II, score 1.3e-06
216591025158	HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone 4-phosphate, score 1.7e-110
216591025159	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591025160	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 1.1e-94
216591025161	PS01174 Lipolytic enzymes G-D-X-G family, putative serine active site.
216591025162	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cl17315
216591025163	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 6.3e-05
216591025164	Predicted helix-turn-helix motif with score 1714.000, SD 5.02 at aa 358-379, sequence LTLEEAADESGISKNTARTHLR
216591025165	HMMPfam hit to PF01545, Cation efflux family, score 5.8e-07
216591025166	6 probable transmembrane helices predicted for BCAM1527 by TMHMM2.0 at aa 21-40, 44-66, 79-101, 116-138, 161-178 and 183-200
216591025167	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3224
216591025168	2 probable transmembrane helices predicted for BCAM1528 by TMHMM2.0 at aa 111-133 and 140-162
216591025169	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591025170	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591025171	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3.3e-10
216591025172	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
216591025173	Interphotoreceptor retinoid-binding protein; serine protease family S41; Region: Peptidase_S41_IRBP; cd07563
216591025174	active site triad [active]
216591025175	HMMPfam hit to PF03572, Peptidase family S41, score 8.7e-19
216591025176	Domain of unknown function (DUF4156); Region: DUF4156; pfam13698
216591025177	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025178	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591025179	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591025180	active site
216591025181	phosphorylation site [posttranslational modification]
216591025182	intermolecular recognition site; other site
216591025183	dimerization interface [polypeptide binding]; other site
216591025184	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591025185	DNA binding residues [nucleotide binding]
216591025186	dimerization interface [polypeptide binding]; other site
216591025187	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 2.8e-23
216591025188	PS00622 Bacterial regulatory proteins, luxR family signature.
216591025189	Predicted helix-turn-helix motif with score 1152.000, SD 3.11 at aa 166-187, sequence GSNARIAATLGITEKTVKTHLG
216591025190	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.3e-31
216591025191	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
216591025192	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591025193	dimerization interface [polypeptide binding]; other site
216591025194	Histidine kinase; Region: HisKA_3; pfam07730
216591025195	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591025196	ATP binding site [chemical binding]; other site
216591025197	Mg2+ binding site [ion binding]; other site
216591025198	G-X-G motif; other site
216591025199	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.3e-05
216591025200	HMMPfam hit to PF07730, Histidine kinase, score 4.2e-09
216591025201	HMMPfam hit to PF00672, HAMP domain, score 1.7e-13
216591025202	3 probable transmembrane helices predicted for BCAM1533 by TMHMM2.0 at aa 15-37, 155-177 and 192-214
216591025203	Plasmid replication region DNA-binding N-term; Region: KfrA_N; pfam11740
216591025204	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025205	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591025206	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591025207	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 4.9e-13
216591025208	Putative NADP-dependent oxidoreductases [General function prediction only]; Region: COG2130
216591025209	Prostaglandin dehydrogenases; Region: PGDH; cd05288
216591025210	NAD(P) binding site [chemical binding]; other site
216591025211	substrate binding site [chemical binding]; other site
216591025212	dimer interface [polypeptide binding]; other site
216591025213	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 0.0083
216591025214	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 8.2e-23
216591025215	Uncharacterized conserved protein [Function unknown]; Region: COG1359
216591025216	HMMPfam hit to PF03992, Antibiotic biosynthesis monooxygenase, score 5.3e-20
216591025217	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080
216591025218	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591025219	catalytic loop [active]
216591025220	iron binding site [ion binding]; other site
216591025221	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591025222	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 2.7e-09
216591025223	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591025224	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 2.6e-34
216591025225	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591025226	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591025227	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591025228	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591025229	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591025230	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 8.9e-09
216591025231	PS00187 Thiamine pyrophosphate enzymes signature.
216591025232	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591025233	Cytochrome C oxidase, cbb3-type, subunit III; Region: Cytochrome_CBB3; pfam13442
216591025234	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591025235	PS00190 Cytochrome c family heme-binding site signature.
216591025236	PS00190 Cytochrome c family heme-binding site signature.
216591025237	HMMPfam hit to PF00034, Cytochrome c, score 4.6e-08
216591025238	PS00190 Cytochrome c family heme-binding site signature.
216591025239	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591025240	Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103
216591025241	tetramerization interface [polypeptide binding]; other site
216591025242	NAD(P) binding site [chemical binding]; other site
216591025243	catalytic residues [active]
216591025244	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 4.2e-209
216591025245	Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of...; Region: Glyco_transf_25; cd06532
216591025246	HMMPfam hit to PF01755, Glycosyltransferase family 25 (LPS bi, score 1.3e-13
216591025247	Probable gene remnant. Similar to the N-terminal region of Escherichia coli putative transposase UniProt:Q5DQF4 (EMBL:AY545598 (479 aa) fasta scores: E()=2e-31, 55.952% id in 168 aa
216591025248	Predicted helix-turn-helix motif with score 1201.000, SD 3.28 at aa 28-49, sequence LKPWRAAERLELTTRQVRRLVA
216591025249	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154
216591025250	Amidase; Region: Amidase; cl11426
216591025251	HMMPfam hit to PF01425, Amidase, score 1.8e-78
216591025252	PS00571 Amidases signature.
216591025253	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591025254	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591025255	DNA binding residues [nucleotide binding]
216591025256	dimerization interface [polypeptide binding]; other site
216591025257	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 2.9e-11
216591025258	HMMPfam hit to PF04967, HTH DNA binding domain, score 0.0034
216591025259	Predicted helix-turn-helix motif with score 1630.000, SD 4.74 at aa 293-314, sequence CTYKGVAKRLGIAPATARHHLR
216591025260	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591025261	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_8; cd07246
216591025262	putative dimer interface [polypeptide binding]; other site
216591025263	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591025264	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 3.3e-15
216591025265	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591025266	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591025267	trimer interface [polypeptide binding]; other site
216591025268	eyelet of channel; other site
216591025269	HMMPfam hit to PF00267, Gram-negative porin, score 2.8e-05
216591025270	putative outer membrane lipoprotein; Provisional; Region: PRK09967
216591025271	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591025272	ligand binding site [chemical binding]; other site
216591025273	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025274	HMMPfam hit to PF00691, OmpA family, score 1.6e-44
216591025275	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591025276	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591025277	Cytochrome C oxidase, cbb3-type, subunit III; Region: Cytochrome_CBB3; pfam13442
216591025278	HMMPfam hit to PF00034, Cytochrome c, score 8.3e-10
216591025279	PS00190 Cytochrome c family heme-binding site signature.
216591025280	PS00190 Cytochrome c family heme-binding site signature.
216591025281	PS00190 Cytochrome c family heme-binding site signature.
216591025282	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025283	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080
216591025284	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591025285	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 1.5e-16
216591025286	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 0.0016
216591025287	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591025288	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591025289	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591025290	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591025291	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 1.1e-14
216591025292	Predicted helix-turn-helix motif with score 973.000, SD 2.50 at aa 731-752, sequence EQLAKQAHALGLPTGAVVHVFN
216591025293	1 probable transmembrane helix predicted for BCAM1553 by TMHMM2.0 at aa 33-55
216591025294	PAS domain; Region: PAS; smart00091
216591025295	PAS fold; Region: PAS_7; pfam12860
216591025296	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591025297	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591025298	metal binding site [ion binding]; metal-binding site
216591025299	active site
216591025300	I-site; other site
216591025301	5 probable transmembrane helices predicted for BCAM1554 by TMHMM2.0 at aa 40-59, 63-82, 103-125, 129-151 and 160-182
216591025302	HMMPfam hit to PF00990, GGDEF domain, score 9.3e-51
216591025303	ectoine utilization protein EutE; Region: ectoine_eutE; TIGR02994
216591025304	Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup; Region: M14_ASTE_ASPA_like_2; cd06252
216591025305	putative active site [active]
216591025306	Zn binding site [ion binding]; other site
216591025307	HMMPfam hit to PF04952, Succinylglutamate desuccinylase / Aspartoac, score 5.1e-59
216591025308	Uncharacterized protein family UPF0547; Region: UPF0547; pfam10571
216591025309	Double zinc ribbon; Region: DZR; pfam12773
216591025310	4 probable transmembrane helices predicted for BCAM1557 by TMHMM2.0 at aa 15-37, 187-206, 211-233 and 240-259
216591025311	recombination associated protein; Reviewed; Region: rdgC; PRK00321
216591025312	HMMPfam hit to PF04381, Putative exonuclease, RdgC, score 3e-88
216591025313	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
216591025314	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591025315	Coenzyme A binding pocket [chemical binding]; other site
216591025316	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.4e-14
216591025317	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591025318	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591025319	substrate binding pocket [chemical binding]; other site
216591025320	membrane-bound complex binding site; other site
216591025321	hinge residues; other site
216591025322	1 probable transmembrane helix predicted for BCAM1560 by TMHMM2.0 at aa 12-34
216591025323	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 3.9e-33
216591025324	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cd00347
216591025325	luciferase family oxidoreductase, group 1; Region: oxido_grp_1; TIGR03558
216591025326	probable oxidoreductase, LLM family; Region: LLM_2I7G; TIGR03858
216591025327	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 8.6e-09
216591025328	FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; Region: FMN_nitrolo; TIGR03860
216591025329	nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2; Region: Nitrilotriacetate_monoxgenase; cd01095
216591025330	active site
216591025331	non-prolyl cis peptide bond; other site
216591025332	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591025333	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591025334	dimer interface [polypeptide binding]; other site
216591025335	conserved gate region; other site
216591025336	putative PBP binding loops; other site
216591025337	ABC-ATPase subunit interface; other site
216591025338	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
216591025339	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591025340	Walker A/P-loop; other site
216591025341	ATP binding site [chemical binding]; other site
216591025342	Q-loop/lid; other site
216591025343	ABC transporter signature motif; other site
216591025344	Walker B; other site
216591025345	D-loop; other site
216591025346	H-loop/switch region; other site
216591025347	5 probable transmembrane helices predicted for BCAM1563 by TMHMM2.0 at aa 41-63, 83-105, 118-140, 231-253 and 266-288
216591025348	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.3e-22
216591025349	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591025350	HMMPfam hit to PF00005, ABC transporter score 2.4e-70
216591025351	PS00017 ATP/GTP-binding site motif A (P-loop).
216591025352	PS00211 ABC transporters family signature.
216591025353	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591025354	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591025355	substrate binding pocket [chemical binding]; other site
216591025356	membrane-bound complex binding site; other site
216591025357	hinge residues; other site
216591025358	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 2e-15
216591025359	Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094
216591025360	active site
216591025361	alkanesulfonate monooxygenase, FMNH(2)-dependent; Region: alk_sulf_monoox; TIGR03565
216591025362	dimer interface [polypeptide binding]; other site
216591025363	non-prolyl cis peptide bond; other site
216591025364	insertion regions; other site
216591025365	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 3.3e-07
216591025366	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
216591025367	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591025368	substrate binding pocket [chemical binding]; other site
216591025369	membrane-bound complex binding site; other site
216591025370	Predicted alpha/beta hydrolase [General function prediction only]; Region: COG4757
216591025371	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591025372	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591025373	MarR family; Region: MarR; pfam01047
216591025374	HMMPfam hit to PF01047, MarR family, score 3.8e-13
216591025375	Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold...; Region: Sialidase; cl17698
216591025376	Asp-box motif; other site
216591025377	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 16
216591025378	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.1
216591025379	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.31
216591025380	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.11
216591025381	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.43
216591025382	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 8.3
216591025383	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
216591025384	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD3; cd08297
216591025385	NAD binding site [chemical binding]; other site
216591025386	substrate binding site [chemical binding]; other site
216591025387	catalytic Zn binding site [ion binding]; other site
216591025388	tetramer interface [polypeptide binding]; other site
216591025389	structural Zn binding site [ion binding]; other site
216591025390	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 6.4e-41
216591025391	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.4e-48
216591025392	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591025393	TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; Region: TonB-hemlactrns; TIGR01786
216591025394	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591025395	N-terminal plug; other site
216591025396	ligand-binding site [chemical binding]; other site
216591025397	PS00228 Tubulin-beta mRNA autoregulation signal.
216591025398	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 6.6e-18
216591025399	HMMPfam hit to PF00593, TonB dependent receptor, score 6.6e-21
216591025400	PS01156 TonB-dependent receptor proteins signature 2.
216591025401	Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_1; pfam12729
216591025402	Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840
216591025403	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591025404	dimerization interface [polypeptide binding]; other site
216591025405	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591025406	dimer interface [polypeptide binding]; other site
216591025407	putative CheW interface [polypeptide binding]; other site
216591025408	1 probable transmembrane helix predicted for BCAM1572 by TMHMM2.0 at aa 12-31
216591025409	HMMPfam hit to PF00672, HAMP domain, score 3.9e-12
216591025410	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 2.3e-87
216591025411	Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a...; Region: GT1_TPS; cd03788
216591025412	alpha,alpha-trehalose-phosphate synthase [UDP-forming]; Region: trehalose_OtsA; TIGR02400
216591025413	active site
216591025414	homotetramer interface [polypeptide binding]; other site
216591025415	HMMPfam hit to PF00982, Glycosyltransferase family, score 1.1e-161
216591025416	FtsH Extracellular; Region: FtsH_ext; pfam06480
216591025417	ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241
216591025418	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591025419	Walker A motif; other site
216591025420	ATP binding site [chemical binding]; other site
216591025421	Walker B motif; other site
216591025422	arginine finger; other site
216591025423	Peptidase family M41; Region: Peptidase_M41; pfam01434
216591025424	HMMPfam hit to PF01434, Peptidase family M41, score 9.3e-93
216591025425	HMMPfam hit to PF00004, ATPase family associated with various c, score 4.1e-90
216591025426	PS00674 AAA-protein family signature.
216591025427	3 probable transmembrane helices predicted for BCAM1575 by TMHMM2.0 at aa 7-29, 117-139 and 226-248
216591025428	PS00017 ATP/GTP-binding site motif A (P-loop).
216591025429	HMMPfam hit to PF06480, FtsH Extracellular, score 3.8e-20
216591025430	Phospholipase C [Cell envelope biogenesis, outer membrane]; Region: PlcC; COG3511
216591025431	acid phosphatase, Burkholderia-type; Region: acid_phos_Burk; TIGR03397
216591025432	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025433	HMMPfam hit to PF04185, Phosphoesterase family, score 4.3e-194
216591025434	hypothetical protein; Validated; Region: PRK07121
216591025435	putative FAD-binding dehydrogenase; Reviewed; Region: PRK12834
216591025436	putative FAD-binding dehydrogenase; Reviewed; Region: PRK12834
216591025437	HMMPfam hit to PF00890, FAD binding domain, score 8.1e-37
216591025438	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 6.1e-05
216591025439	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025440	SnoaL-like domain; Region: SnoaL_4; pfam13577
216591025441	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591025442	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591025443	NAD(P) binding site [chemical binding]; other site
216591025444	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591025445	active site
216591025446	active site
216591025447	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.9e-07
216591025448	HMMPfam hit to PF07993, Male sterility protein, score 0.0024
216591025449	Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_GTP; cd00819
216591025450	active site
216591025451	substrate-binding site [chemical binding]; other site
216591025452	metal-binding site [ion binding]
216591025453	GTP binding site [chemical binding]; other site
216591025454	HMMPfam hit to PF00821, Phosphoenolpyruvate carboxykinase, score 0
216591025455	PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature.
216591025456	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591025457	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
216591025458	NAD(P) binding site [chemical binding]; other site
216591025459	active site
216591025460	HMMPfam hit to PF00106, short chain dehydrogenase, score 7.9e-33
216591025461	PS00061 Short-chain dehydrogenases/reductases family signature.
216591025462	classical (c) SDRs; Region: SDR_c; cd05233
216591025463	NAD(P) binding site [chemical binding]; other site
216591025464	active site
216591025465	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.4e-17
216591025466	PS00061 Short-chain dehydrogenases/reductases family signature.
216591025467	short chain dehydrogenase; Provisional; Region: PRK08303
216591025468	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591025469	NAD(P) binding site [chemical binding]; other site
216591025470	active site
216591025471	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.4e-11
216591025472	SnoaL-like domain; Region: SnoaL_4; pfam13577
216591025473	SnoaL-like domain; Region: SnoaL_3; pfam13474
216591025474	SnoaL-like domain; Region: SnoaL_4; pfam13577
216591025475	EthD domain; Region: EthD; pfam07110
216591025476	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
216591025477	tetramer interface [polypeptide binding]; other site
216591025478	active site
216591025479	Mg2+/Mn2+ binding site [ion binding]; other site
216591025480	isocitrate lyase; Region: PLN02892
216591025481	HMMPfam hit to PF00463, Isocitrate lyase family, score 2e-17
216591025482	YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function.  The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting...; Region: YeaK; cd04336
216591025483	putative deacylase active site [active]
216591025484	HMMPfam hit to PF04073, YbaK / prolyl-tRNA synthetases associated do, score 8.5e-31
216591025485	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2964
216591025486	YheO-like PAS domain; Region: PAS_6; pfam08348
216591025487	HTH domain; Region: HTH_22; pfam13309
216591025488	HMMPfam hit to PF08348, YheO-like protein, score 5.1e-56
216591025489	Predicted helix-turn-helix motif with score 1102.000, SD 2.94 at aa 191-212, sequence RAMEIVSQHLGVSRATVYNDAK
216591025490	Threonine dehydratase [Amino acid transport and metabolism]; Region: IlvA; COG1171
216591025491	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
216591025492	tetramer interface [polypeptide binding]; other site
216591025493	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591025494	catalytic residue [active]
216591025495	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 4.4e-87
216591025496	hypothetical protein; Provisional; Region: PRK06194
216591025497	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591025498	NAD(P) binding site [chemical binding]; other site
216591025499	active site
216591025500	HMMPfam hit to PF00106, short chain dehydrogenase, score 7.3e-29
216591025501	Outer membrane cobalamin receptor protein [Coenzyme metabolism]; Region: BtuB; COG4206
216591025502	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591025503	N-terminal plug; other site
216591025504	ligand-binding site [chemical binding]; other site
216591025505	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 4.7e-26
216591025506	HMMPfam hit to PF00593, TonB dependent receptor, score 1.3e-28
216591025507	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591025508	WHG domain; Region: WHG; pfam13305
216591025509	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591025510	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
216591025511	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 2e-60
216591025512	LysE type translocator; Region: LysE; cl00565
216591025513	HMMPfam hit to PF01810, LysE type translocator, score 1.2e-23
216591025514	5 probable transmembrane helices predicted for BCAM1596 by TMHMM2.0 at aa 7-29, 49-83, 113-135, 145-167 and 180-202
216591025515	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025516	helix_turn_helix ASNC type; Region: HTH_ASNC; smart00344
216591025517	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591025518	putative DNA binding site [nucleotide binding]; other site
216591025519	putative Zn2+ binding site [ion binding]; other site
216591025520	AsnC family; Region: AsnC_trans_reg; pfam01037
216591025521	HMMPfam hit to PF01047, MarR family, score 0.0044
216591025522	Predicted helix-turn-helix motif with score 1546.000, SD 4.45 at aa 18-39, sequence ISYTELARQVHLSVPAVTERVK
216591025523	HMMPfam hit to PF01037, AsnC family, score 1.4e-22
216591025524	HMMPfam hit to PF01391, Collagen triple helix repeat (20 copies), score 8.5e-06
216591025525	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025526	Copper binding periplasmic protein CusF; Region: CusF_Ec; pfam11604
216591025527	1 probable transmembrane helix predicted for BCAM1600 by TMHMM2.0 at aa 7-24
216591025528	Predicted metal-binding integral membrane protein (DUF2182); Region: DUF2182; pfam09948
216591025529	6 probable transmembrane helices predicted for BCAM1601 by TMHMM2.0 at aa 13-35, 68-90, 111-133, 148-167, 213-235 and 245-262
216591025530	Protein of unknown function (DUF1326); Region: DUF1326; cl02375
216591025531	HMMPfam hit to PF07040, Protein of unknown function (DUF1326), score 4e-93
216591025532	3 probable transmembrane helices predicted for BCAM1603 by TMHMM2.0 at aa 2-24, 34-56 and 69-91
216591025533	2 probable transmembrane helices predicted for BCAM1604 by TMHMM2.0 at aa 7-29 and 52-74
216591025534	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025535	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663
216591025536	paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to...; Region: LbH_paaY_like; cd04745
216591025537	putative trimer interface [polypeptide binding]; other site
216591025538	putative metal binding site [ion binding]; other site
216591025539	PS00697 ATP-dependent DNA ligase AMP-binding site.
216591025540	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.015
216591025541	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 10
216591025542	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.2e+02
216591025543	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.038
216591025544	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_alpha; cd01715
216591025545	Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766
216591025546	PS00696 Electron transfer flavoprotein alpha-subunit signature.
216591025547	HMMPfam hit to PF00766, Electron transfer flavoprotein FAD-binding, score 1.4e-54
216591025548	HMMPfam hit to PF01012, Electron transfer flavoprotein domain, score 2.8e-40
216591025549	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714
216591025550	Ligand binding site [chemical binding]; other site
216591025551	Electron transfer flavoprotein domain; Region: ETF; pfam01012
216591025552	HMMPfam hit to PF01012, Electron transfer flavoprotein domain, score 1.9e-69
216591025553	PS01065 Electron transfer flavoprotein beta-subunit signature.
216591025554	short chain dehydrogenase; Provisional; Region: PRK06114
216591025555	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591025556	NAD(P) binding site [chemical binding]; other site
216591025557	active site
216591025558	HMMPfam hit to PF00106, short chain dehydrogenase, score 8.4e-35
216591025559	methyl indole-3-acetate methyltransferase; Region: PLN02211; cl17657
216591025560	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; Region: biphenyl_bphD; TIGR03343
216591025561	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.6e-27
216591025562	short chain dehydrogenase; Provisional; Region: PRK07856
216591025563	classical (c) SDRs; Region: SDR_c; cd05233
216591025564	NAD(P) binding site [chemical binding]; other site
216591025565	active site
216591025566	PS00017 ATP/GTP-binding site motif A (P-loop).
216591025567	HMMPfam hit to PF00106, short chain dehydrogenase, score 8.6e-27
216591025568	Protein of unknown function (DUF1302); Region: DUF1302; pfam06980
216591025569	HMMPfam hit to PF06980, Protein of unknown function (DUF1302), score 5.8e-55
216591025570	Protein of unknown function (DUF1329); Region: DUF1329; pfam07044
216591025571	HMMPfam hit to PF07044, Protein of unknown function (DUF1329), score 7.3e-106
216591025572	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
216591025573	HMMPfam hit to PF01689, Hydratase/decarboxylase, score 3e-109
216591025574	acetaldehyde dehydrogenase; Validated; Region: PRK08300
216591025575	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
216591025576	Prokaryotic acetaldehyde dehydrogenase, dimerisation; Region: AcetDehyd-dimer; pfam09290
216591025577	HMMPfam hit to PF01118, Semialdehyde dehydrogenase, NAD bindin, score 2.1e-23
216591025578	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated; Region: PRK08195
216591025579	4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_HOA; cd07943
216591025580	active site
216591025581	catalytic residues [active]
216591025582	metal binding site [ion binding]; metal-binding site
216591025583	DmpG-like communication domain; Region: DmpG_comm; pfam07836
216591025584	HMMPfam hit to PF00682, HMGL-like, score 5.4e-97
216591025585	HMMPfam hit to PF07836, DmpG-like communication domain, score 3.5e-41
216591025586	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591025587	putative substrate translocation pore; other site
216591025588	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591025589	13 probable transmembrane helices predicted for BCAM1616 by TMHMM2.0 at aa 20-42, 49-71, 86-108, 115-137, 147-169, 176-195, 210-229, 234-253, 273-295, 308-330, 370-392, 404-426 and 436-455
216591025590	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.1e-51
216591025591	PS00216 Sugar transport proteins signature 1.
216591025592	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
216591025593	rRNA binding site [nucleotide binding]; other site
216591025594	predicted 30S ribosome binding site; other site
216591025595	HMMPfam hit to PF00575, S1 RNA binding domain, score 0.00018
216591025596	HMMPfam hit to PF01176, Translation initiation factor 1A / IF-1, score 6.5e-27
216591025597	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
216591025598	DNA-binding site [nucleotide binding]; DNA binding site
216591025599	RNA-binding motif; other site
216591025600	HMMPfam hit to PF00313, 'Cold-shock' DNA-binding domain, score 6e-36
216591025601	PS00352 'Cold-shock' DNA-binding domain signature.
216591025602	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
216591025603	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cl00938
216591025604	iron-sulfur cluster [ion binding]; other site
216591025605	[2Fe-2S] cluster binding site [ion binding]; other site
216591025606	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 8.3e-20
216591025607	Predicted exporters of the RND superfamily [General function prediction only]; Region: COG1033
216591025608	12 probable transmembrane helices predicted for BCAM1621 by TMHMM2.0 at aa 33-52, 239-261, 270-292, 297-319, 340-359, 369-391, 421-443, 627-649, 656-678, 682-704, 730-749 and 764-786
216591025609	Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]; Region: COG4447
216591025610	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 15
216591025611	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.5
216591025612	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 1.2
216591025613	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 3.7
216591025614	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 11
216591025615	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 11
216591025616	1 probable transmembrane helix predicted for BCAM1622 by TMHMM2.0 at aa 5-22
216591025617	acetyl-CoA acetyltransferase; Provisional; Region: PRK07108
216591025618	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591025619	dimer interface [polypeptide binding]; other site
216591025620	active site
216591025621	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 2.2e-56
216591025622	PS00099 Thiolases active site.
216591025623	PS00737 Thiolases signature 2.
216591025624	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 7.2e-78
216591025625	NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.  Rhizobium and related species form nodules on the roots of their...; Region: NodN; cd03450
216591025626	putative active site [active]
216591025627	putative catalytic site [active]
216591025628	HMMPfam hit to PF01575, MaoC like domain, score 6.4e-20
216591025629	short chain dehydrogenase; Provisional; Region: PRK07831
216591025630	classical (c) SDRs; Region: SDR_c; cd05233
216591025631	NAD(P) binding site [chemical binding]; other site
216591025632	active site
216591025633	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.1e-25
216591025634	PS00061 Short-chain dehydrogenases/reductases family signature.
216591025635	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591025636	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591025637	active site
216591025638	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 2.1e-20
216591025639	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 4.8e-25
216591025640	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591025641	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591025642	active site
216591025643	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 2.3e-25
216591025644	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 6.6e-06
216591025645	short chain dehydrogenase; Provisional; Region: PRK07791
216591025646	(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Region: hydroxyacyl-CoA-like_DH_SDR_c-like; cd05353
216591025647	homodimer interface [polypeptide binding]; other site
216591025648	NAD binding site [chemical binding]; other site
216591025649	active site
216591025650	HMMPfam hit to PF00106, short chain dehydrogenase, score 9.2e-34
216591025651	PS00061 Short-chain dehydrogenases/reductases family signature.
216591025652	acetyl-CoA acetyltransferase; Provisional; Region: PRK07801
216591025653	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591025654	dimer interface [polypeptide binding]; other site
216591025655	active site
216591025656	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 1.1e-55
216591025657	PS00737 Thiolases signature 2.
216591025658	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 4.6e-56
216591025659	pimeloyl-CoA dehydrogenase, small subunit; Region: pimD_small; TIGR03203
216591025660	Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771
216591025661	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591025662	active site
216591025663	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 2.4e-22
216591025664	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 0.00091
216591025665	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591025666	Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Region: ACAD_fadE6_17_26; cd01152
216591025667	FAD binding site [chemical binding]; other site
216591025668	substrate binding site [chemical binding]; other site
216591025669	catalytic base [active]
216591025670	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 4.9e-15
216591025671	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 2.1e-21
216591025672	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591025673	enoyl-CoA hydratase; Provisional; Region: PRK06495
216591025674	substrate binding site [chemical binding]; other site
216591025675	oxyanion hole (OAH) forming residues; other site
216591025676	trimer interface [polypeptide binding]; other site
216591025677	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 1.4e-36
216591025678	1 probable transmembrane helix predicted for BCAM1632 by TMHMM2.0 at aa 107-129
216591025679	putative enoyl-[acyl-carrier-protein] reductase II; Region: enACPred_II; TIGR03151
216591025680	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
216591025681	FMN binding site [chemical binding]; other site
216591025682	substrate binding site [chemical binding]; other site
216591025683	putative catalytic residue [active]
216591025684	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, score 1e-85
216591025685	PS00211 ABC transporters family signature.
216591025686	enoyl-CoA hydratase; Provisional; Region: PRK08290
216591025687	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591025688	substrate binding site [chemical binding]; other site
216591025689	oxyanion hole (OAH) forming residues; other site
216591025690	trimer interface [polypeptide binding]; other site
216591025691	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 4.7e-28
216591025692	Coenzyme A transferase; Region: CoA_trans; cl17247
216591025693	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]; Region: AtoD; COG1788
216591025694	HMMPfam hit to PF01144, Coenzyme A transferase, score 3.5e-35
216591025695	2,3-dihydroxybiphenyl 1,2-dioxygenase; Region: 23dbph12diox; TIGR03213
216591025696	N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins; Region: BphC1-RGP6_N_like; cd07252
216591025697	C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins; Region: BphC1-RGP6_C_like; cd07237
216591025698	active site
216591025699	Fe binding site [ion binding]; other site
216591025700	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 1.2e-21
216591025701	PS00082 Extradiol ring-cleavage dioxygenases signature.
216591025702	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 0.0006
216591025703	PIN domain of ribonucleases (toxins), VapC and FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus horikoshii protein PH0500, and other similar bacterial and archaeal homologs; Region: PIN_VapC-FitB; cd09881
216591025704	oligomeric interface; other site
216591025705	putative active site [active]
216591025706	homodimer interface [polypeptide binding]; other site
216591025707	HMMPfam hit to PF01850, PIN domain, score 1.6e-13
216591025708	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591025709	9 probable transmembrane helices predicted for BCAM1640 by TMHMM2.0 at aa 20-42, 63-85, 95-112, 133-152, 193-215, 222-244, 290-312, 319-341 and 356-378
216591025710	HMMPfam hit to PF01757, Acyltransferase family, score 1.5e-21
216591025711	PS01047 Heavy-metal-associated domain.
216591025712	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: FabG; COG1028
216591025713	classical (c) SDRs; Region: SDR_c; cd05233
216591025714	NAD(P) binding site [chemical binding]; other site
216591025715	active site
216591025716	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.4e-11
216591025717	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07656
216591025718	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591025719	Uncharacterized subfamily of fatty acid CoA ligase (FACL); Region: FACL_like_2; cd05917
216591025720	acyl-activating enzyme (AAE) consensus motif; other site
216591025721	acyl-activating enzyme (AAE) consensus motif; other site
216591025722	putative AMP binding site [chemical binding]; other site
216591025723	putative active site [active]
216591025724	putative CoA binding site [chemical binding]; other site
216591025725	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.5e-119
216591025726	PS00455 Putative AMP-binding domain signature.
216591025727	phenylacetate-CoA oxygenase/reductase, PaaK subunit; Region: PA_CoA_Oxy5; TIGR02160
216591025728	NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like...; Region: PA_degradation_oxidoreductase_like; cd06214
216591025729	FAD binding pocket [chemical binding]; other site
216591025730	FAD binding motif [chemical binding]; other site
216591025731	phosphate binding motif [ion binding]; other site
216591025732	beta-alpha-beta structure motif; other site
216591025733	NAD(p) ribose binding residues [chemical binding]; other site
216591025734	NAD binding pocket [chemical binding]; other site
216591025735	NAD(P)-pyrophosphate-nicotinamide binding residues [chemical binding]; other site
216591025736	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591025737	catalytic loop [active]
216591025738	iron binding site [ion binding]; other site
216591025739	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 2.4e-22
216591025740	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591025741	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 5.4e-14
216591025742	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 1.1e-16
216591025743	Flavin reductase like domain; Region: Flavin_Reduct; smart00903
216591025744	HMMPfam hit to PF01613, Flavin reductase like domain, score 2e-31
216591025745	3-ketosteroid-delta-1-dehydrogenase; Reviewed; Region: PRK07843
216591025746	putative FAD-binding dehydrogenase; Reviewed; Region: PRK12834
216591025747	HMMPfam hit to PF00890, FAD binding domain, score 2.8e-116
216591025748	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00036
216591025749	Naphthocyclinone hydroxylase; Region: NcnH; cd01159
216591025750	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591025751	Flavin binding site [chemical binding]; other site
216591025752	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 5.5e-29
216591025753	probable oxidoreductase, LLM family; Region: LLM_2I7G; TIGR03858
216591025754	Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]; Region: COG2141
216591025755	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 1.6e-21
216591025756	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591025757	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cd06587
216591025758	active site
216591025759	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 0.00016
216591025760	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591025761	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591025762	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591025763	dimerization interface [polypeptide binding]; other site
216591025764	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.6e-26
216591025765	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.4e-15
216591025766	PS00044 Bacterial regulatory proteins, lysR family signature.
216591025767	Predicted helix-turn-helix motif with score 1906.000, SD 5.68 at aa 17-38, sequence RSFTEAGRQLGLNQSSVSEHIR
216591025768	putative transporter; Provisional; Region: PRK10504
216591025769	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591025770	putative substrate translocation pore; other site
216591025771	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591025772	14 probable transmembrane helices predicted for BCAM1651 by TMHMM2.0 at aa 9-31, 46-68, 75-97, 101-123, 130-152, 162-184, 197-214, 224-241, 262-284, 289-311, 324-346, 356-378, 399-418 and 422-444
216591025773	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-56
216591025774	Domain of unknown function (DUF4377); Region: DUF4377; pfam14302
216591025775	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025776	helix_turn_helix, Lux Regulon; Region: HTH_LUXR; smart00421
216591025777	DNA binding residues [nucleotide binding]
216591025778	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 4.1e-05
216591025779	HMMPfam hit to PF04967, HTH DNA binding domain, score 0.0016
216591025780	Predicted helix-turn-helix motif with score 1489.000, SD 4.26 at aa 361-382, sequence QTLEEAADELAISKNTARSHLR
216591025781	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
216591025782	classical (c) SDRs; Region: SDR_c; cd05233
216591025783	NAD(P) binding site [chemical binding]; other site
216591025784	active site
216591025785	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.3e-30
216591025786	PS00061 Short-chain dehydrogenases/reductases family signature.
216591025787	Site-specific recombinase XerC [DNA replication, recombination, and repair]; Region: XerC; COG4973
216591025788	INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in...; Region: INT_SG1_C; cd01183
216591025789	Int/Topo IB signature motif; other site
216591025790	HMMPfam hit to PF00589, Phage integrase family, score 4.7e-08
216591025791	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025792	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4102
216591025793	HMMPfam hit to PF07394, Protein of unknown function (DUF1501), score 7.1e-31
216591025794	Protein of unknown function (DUF1800); Region: DUF1800; pfam08811
216591025795	Heavy-metal resistance; Region: Metal_resist; pfam13801
216591025796	1 probable transmembrane helix predicted for BCAM1659 by TMHMM2.0 at aa 10-32
216591025797	1 probable transmembrane helix predicted for BCAM1660 by TMHMM2.0 at aa 85-107
216591025798	RNA polymerase sigma factor; Reviewed; Region: PRK05602
216591025799	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591025800	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591025801	HMMPfam hit to PF04545, Sigma-70, region, score 3.3e-14
216591025802	HMMPfam hit to PF08281, Sigma-70, region, score 1.3e-14
216591025803	HMMPfam hit to PF04542, Sigma-70 region, score 1.8e-22
216591025804	PS01063 Sigma-70 factors ECF subfamily signature.
216591025805	1 probable transmembrane helix predicted for BCAM1662 by TMHMM2.0 at aa 7-29
216591025806	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
216591025807	active site
216591025808	metal binding site [ion binding]; metal-binding site
216591025809	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 2.5e-10
216591025810	Probable gene remnant. Similar to an internal region of Agrobacterium tumefaciens (strain c58/atcc 33970) aldehyde dehydrogenase Dhal UniProt:Q8U8X9 (EMBL:AE009326 (505 aa) fasta scores: E()=1.8e-08, 67.347% id in 49 aa
216591025811	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591025812	aromatic amino acid exporter; Provisional; Region: PRK11689
216591025813	10 probable transmembrane helices predicted for BCAM1664 by TMHMM2.0 at aa 7-29, 34-56, 65-87, 92-114, 121-140, 160-177, 190-212, 216-238, 245-267 and 271-290
216591025814	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591025815	HMMPfam hit to PF01810, LysE type translocator, score 1.2e-20
216591025816	5 probable transmembrane helices predicted for BCAM1665 by TMHMM2.0 at aa 6-28, 41-63, 73-92, 113-135 and 158-180
216591025817	DNA-binding transcriptional regulator CynR; Provisional; Region: PRK11242
216591025818	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591025819	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591025820	dimerization interface [polypeptide binding]; other site
216591025821	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.2e-32
216591025822	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.2e-15
216591025823	PS00044 Bacterial regulatory proteins, lysR family signature.
216591025824	Predicted helix-turn-helix motif with score 1649.000, SD 4.80 at aa 16-37, sequence GSLTAAADRLSRSQSAISHALT
216591025825	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
216591025826	8 probable transmembrane helices predicted for BCAM1667 by TMHMM2.0 at aa 10-32, 39-58, 90-112, 119-137, 152-174, 187-209, 213-230 and 242-259
216591025827	HMMPfam hit to PF01925, Domain of unknown function DUF81, score 1.7e-10
216591025828	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591025829	1 probable transmembrane helix predicted for BCAM1669 by TMHMM2.0 at aa 4-22
216591025830	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591025831	dimerization interface [polypeptide binding]; other site
216591025832	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591025833	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591025834	metal binding site [ion binding]; metal-binding site
216591025835	active site
216591025836	I-site; other site
216591025837	HMMPfam hit to PF00990, GGDEF domain, score 1.2e-59
216591025838	HMMPfam hit to PF00672, HAMP domain, score 3.4e-12
216591025839	2 probable transmembrane helices predicted for BCAM1670 by TMHMM2.0 at aa 10-32 and 323-345
216591025840	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
216591025841	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
216591025842	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591025843	DNA-binding site [nucleotide binding]; DNA binding site
216591025844	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591025845	FCD domain; Region: FCD; pfam07729
216591025846	HMMPfam hit to PF07729, FCD domain, score 2e-30
216591025847	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 5.8e-20
216591025848	Predicted helix-turn-helix motif with score 1243.000, SD 3.42 at aa 43-64, sequence PSERSLADQFGVSRTQVREAII
216591025849	mannonate dehydratase; Provisional; Region: PRK03906
216591025850	mannonate dehydratase; Region: uxuA; TIGR00695
216591025851	HMMPfam hit to PF03786, D-mannonate dehydratase (UxuA), score 6.3e-213
216591025852	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 0.0021
216591025853	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591025854	D-galactonate transporter; Region: 2A0114; TIGR00893
216591025855	putative substrate translocation pore; other site
216591025856	9 probable transmembrane helices predicted for BCAM1673 by TMHMM2.0 at aa 7-29, 44-66, 73-95, 160-182, 227-249, 264-286, 327-349, 364-386 and 391-413
216591025857	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.4e-56
216591025858	PS00211 ABC transporters family signature.
216591025859	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591025860	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591025861	DNA-binding site [nucleotide binding]; DNA binding site
216591025862	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591025863	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591025864	homodimer interface [polypeptide binding]; other site
216591025865	catalytic residue [active]
216591025866	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 8e-14
216591025867	Predicted helix-turn-helix motif with score 1203.000, SD 3.28 at aa 27-48, sequence PSLRQIIAQHGVSQSTVFRAYY
216591025868	HMMPfam hit to PF00155, Aminotransferase class I and II, score 2.7e-14
216591025869	Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]; Region: CysI; COG0155
216591025870	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
216591025871	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
216591025872	HMMPfam hit to PF03460, Nitrite/Sulfite reductase ferredoxin-lik, score 1.1e-09
216591025873	HMMPfam hit to PF01077, Nitrite and sulphite reductase 4Fe-4S do, score 5.3e-48
216591025874	HMMPfam hit to PF03460, Nitrite/Sulfite reductase ferredoxin-lik, score 3.8e-11
216591025875	HMMPfam hit to PF01077, Nitrite and sulphite reductase 4Fe-4S do, score 3.5e-07
216591025876	Bacterial protein of unknown function (DUF934); Region: DUF934; pfam06073
216591025877	HMMPfam hit to PF06073, Bacterial protein of unknown function (DUF93, score 5.5e-11
216591025878	Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]; Region: VirJ; COG3946
216591025879	Bacterial virulence protein (VirJ); Region: VirJ; pfam06057
216591025880	HMMPfam hit to PF06057, Bacterial virulence protein (VirJ), score 2.5e-106
216591025881	PS00120 Lipases, serine active site.
216591025882	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025883	Predicted integral membrane protein [Function unknown]; Region: COG0392
216591025884	Uncharacterized conserved protein [Function unknown]; Region: COG2898
216591025885	Uncharacterized conserved protein (DUF2156); Region: DUF2156; pfam09924
216591025886	HMMPfam hit to PF04331, Family of unknown function (DUF472), score 6.7e-26
216591025887	HMMPfam hit to PF04330, Family of unknown function (DUF471), score 2.8e-15
216591025888	HMMPfam hit to PF04329, Family of unknown function (DUF470), score 4.1e-51
216591025889	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591025890	14 probable transmembrane helices predicted for BCAM1679 by TMHMM2.0 at aa 28-45, 66-88, 103-125, 146-168, 183-205, 226-248, 258-280, 301-323, 343-365, 378-400, 410-429, 431-450, 465-487 and 508-530
216591025891	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591025892	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591025893	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474
216591025894	putative effector binding pocket; other site
216591025895	putative dimerization interface [polypeptide binding]; other site
216591025896	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.3e-42
216591025897	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-20
216591025898	PS00044 Bacterial regulatory proteins, lysR family signature.
216591025899	Predicted helix-turn-helix motif with score 1197.000, SD 3.26 at aa 20-41, sequence GNFTRAAAALGLTPAAVSLSIG
216591025900	Domain of unknown function (DUF336); Region: DUF336; pfam03928
216591025901	short chain dehydrogenase; Provisional; Region: PRK09291
216591025902	17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374
216591025903	NADP binding site [chemical binding]; other site
216591025904	active site
216591025905	steroid binding site; other site
216591025906	HMMPfam hit to PF03928, Domain of unknown function (DUF336), score 4.2e-38
216591025907	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.2e-23
216591025908	HMMPfam hit to PF07993, Male sterility protein, score 0.0046
216591025909	PS00061 Short-chain dehydrogenases/reductases family signature.
216591025910	Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol...; Region: MopB_Nitrate-R-NapA-like; cd02754
216591025911	formate dehydrogenase, alpha subunit, archaeal-type; Region: Fdh-alpha; TIGR01591
216591025912	[4Fe-4S] binding site [ion binding]; other site
216591025913	molybdopterin cofactor binding site; other site
216591025914	Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol...; Region: MopB_CT_Nitrate-R-NapA-like; cd02791
216591025915	molybdopterin cofactor binding site; other site
216591025916	Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]; Region: CysJ; COG0369
216591025917	Flavodoxin; Region: Flavodoxin_1; pfam00258
216591025918	Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ...; Region: SiR; cd06199
216591025919	FAD binding pocket [chemical binding]; other site
216591025920	FAD binding motif [chemical binding]; other site
216591025921	catalytic residues [active]
216591025922	NAD binding pocket [chemical binding]; other site
216591025923	phosphate binding motif [ion binding]; other site
216591025924	beta-alpha-beta structure motif; other site
216591025925	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 2.2e-28
216591025926	HMMPfam hit to PF00667, FAD binding domain, score 5.6e-36
216591025927	HMMPfam hit to PF00258, Flavodoxin, score 2.4e-30
216591025928	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 5.4e-47
216591025929	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591025930	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 1.5e-87
216591025931	HMMPfam hit to PF04879, Molybdopterin oxidoreductase Fe4S4 do, score 9.3e-22
216591025932	PS00551 Prokaryotic molybdopterin oxidoreductases signature 1.
216591025933	Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while...; Region: Rieske_NirD; cd03529
216591025934	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 0.0086
216591025935	nitrite reductase subunit NirD; Provisional; Region: PRK14989
216591025936	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591025937	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; pfam04324
216591025938	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
216591025939	HMMPfam hit to PF01077, Nitrite and sulphite reductase 4Fe-4S do, score 2e-43
216591025940	PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site.
216591025941	HMMPfam hit to PF03460, Nitrite/Sulfite reductase ferredoxin-lik, score 3.4e-24
216591025942	HMMPfam hit to PF04324, BFD-like [2Fe-2S] binding domain, score 7e-23
216591025943	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoredu, score 1.4e-43
216591025944	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoredu, score 2.5e-21
216591025945	nitrite extrusion protein (nitrite facilitator); Region: 2A0108; TIGR00886
216591025946	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591025947	putative substrate translocation pore; other site
216591025948	12 probable transmembrane helices predicted for BCAM1686 by TMHMM2.0 at aa 21-43, 53-75, 87-104, 108-127, 148-170, 180-199, 244-266, 276-298, 311-333, 337-359, 366-388 and 398-420
216591025949	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.1e-24
216591025950	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025951	Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); Region: SUMT; cd11642
216591025952	active site
216591025953	SAM binding site [chemical binding]; other site
216591025954	homodimer interface [polypeptide binding]; other site
216591025955	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 7.7e-70
216591025956	PS00839 Uroporphyrin-III C-methyltransferase signature 1.
216591025957	Response regulator with putative antiterminator output domain [Signal transduction mechanisms]; Region: AmiR; COG3707
216591025958	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591025959	active site
216591025960	phosphorylation site [posttranslational modification]
216591025961	intermolecular recognition site; other site
216591025962	dimerization interface [polypeptide binding]; other site
216591025963	ANTAR domain; Region: ANTAR; pfam03861
216591025964	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.6e-05
216591025965	HMMPfam hit to PF03861, ANTAR domain, score 4.3e-17
216591025966	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
216591025967	NMT1-like family; Region: NMT1_2; pfam13379
216591025968	Uncharacterized subfamily of Uracil-DNA glycosylases; Region: UDG_like_1; cd10033
216591025969	putative uracil binding site [chemical binding]; other site
216591025970	putative active site [active]
216591025971	HMMPfam hit to PF03167, Uracil DNA glycosylase superfamily, score 1.1e-06
216591025972	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591025973	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591025974	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.8e-05
216591025975	Predicted helix-turn-helix motif with score 1220.000, SD 3.34 at aa 213-234, sequence LTLAATAEAAFLSPNYLAHLVR
216591025976	PS00041 Bacterial regulatory proteins, araC family signature.
216591025977	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3e-12
216591025978	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
216591025979	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591025980	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 8.9e-57
216591025981	Domain of unknown function (DUF4303); Region: DUF4303; pfam14136
216591025982	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591025983	putative substrate translocation pore; other site
216591025984	11 probable transmembrane helices predicted for BCAM1694 by TMHMM2.0 at aa 15-37, 50-69, 84-106, 137-159, 163-185, 214-236, 251-270, 282-304, 309-331, 344-366 and 371-393
216591025985	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.3e-40
216591025986	PS00216 Sugar transport proteins signature 1.
216591025987	periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037
216591025988	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
216591025989	PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117
216591025990	protein binding site [polypeptide binding]; other site
216591025991	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
216591025992	protein binding site [polypeptide binding]; other site
216591025993	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 0.0092
216591025994	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 5.5e-05
216591025995	HMMPfam hit to PF00089, Trypsin, score 2.4e-08
216591025996	1 probable transmembrane helix predicted for BCAM1695 by TMHMM2.0 at aa 13-35
216591025997	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591025998	CAAX protease self-immunity; Region: Abi; pfam02517
216591025999	7 probable transmembrane helices predicted for BCAM1697 by TMHMM2.0 at aa 13-35, 47-66, 86-108, 128-147, 175-197, 210-232 and 242-261
216591026000	PS00041 Bacterial regulatory proteins, araC family signature.
216591026001	HMMPfam hit to PF02517, CAAX amino terminal protease family, score 1.9e-16
216591026002	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591026003	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591026004	DNA-binding site [nucleotide binding]; DNA binding site
216591026005	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591026006	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591026007	homodimer interface [polypeptide binding]; other site
216591026008	catalytic residue [active]
216591026009	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.4e-09
216591026010	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 2.3e-11
216591026011	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
216591026012	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591026013	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
216591026014	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591026015	Coenzyme A binding pocket [chemical binding]; other site
216591026016	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 5.4e-05
216591026017	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 7.9e-16
216591026018	Domain of unknown function (DUF3331); Region: DUF3331; pfam11811
216591026019	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026020	putative substrate translocation pore; other site
216591026021	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591026022	12 probable transmembrane helices predicted for BCAM1702 by TMHMM2.0 at aa 30-52, 67-89, 96-118, 122-144, 156-178, 182-204, 230-249, 264-286, 293-315, 319-341, 354-376 and 386-405
216591026023	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7e-36
216591026024	Acetyltransferase (GNAT) domain; Region: Acetyltransf_7; pfam13508
216591026025	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.7e-15
216591026026	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
216591026027	(2R,3R)-2,3-butanediol dehydrogenase; Region: butanediol_DH_like; cd08233
216591026028	putative NAD(P) binding site [chemical binding]; other site
216591026029	catalytic Zn binding site [ion binding]; other site
216591026030	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 8.4e-47
216591026031	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591026032	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 2.4e-45
216591026033	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
216591026034	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591026035	dimer interface [polypeptide binding]; other site
216591026036	phosphorylation site [posttranslational modification]
216591026037	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591026038	ATP binding site [chemical binding]; other site
216591026039	Mg2+ binding site [ion binding]; other site
216591026040	G-X-G motif; other site
216591026041	1 probable transmembrane helix predicted for BCAM1705 by TMHMM2.0 at aa 77-99
216591026042	PS00215 Mitochondrial energy transfer proteins signature.
216591026043	PS00216 Sugar transport proteins signature 1.
216591026044	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 0.0016
216591026045	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 3.5e-36
216591026046	6 probable transmembrane helices predicted for BCAM1706 by TMHMM2.0 at aa 12-29, 39-56, 63-82, 87-109, 150-167 and 177-199
216591026047	9 probable transmembrane helices predicted for BCAM1707 by TMHMM2.0 at aa 2-24, 44-66, 73-95, 115-137, 150-172, 182-204, 211-233, 237-256 and 261-283
216591026048	HMMPfam hit to PF02517, CAAX amino terminal protease family, score 4.9e-08
216591026049	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591026050	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591026051	active site
216591026052	catalytic tetrad [active]
216591026053	HMMPfam hit to PF00248, Aldo/keto reductase family, score 3e-74
216591026054	MarC family integral membrane protein; Region: MarC; cl00919
216591026055	HMMPfam hit to PF01914, MarC family integral membrane protein, score 2.8e-24
216591026056	5 probable transmembrane helices predicted for BCAM1709 by TMHMM2.0 at aa 25-47, 67-89, 136-158, 167-189 and 209-231
216591026057	enoyl-CoA hydratase; Provisional; Region: PRK05995
216591026058	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591026059	substrate binding site [chemical binding]; other site
216591026060	oxyanion hole (OAH) forming residues; other site
216591026061	trimer interface [polypeptide binding]; other site
216591026062	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 2.7e-45
216591026063	Phenylacetate-CoA ligase (also known as PaaK); Region: PaaK; cd05913
216591026064	phenylacetate-CoA ligase; Region: PA_CoA_ligase; TIGR02155
216591026065	active site
216591026066	AMP binding site [chemical binding]; other site
216591026067	homodimer interface [polypeptide binding]; other site
216591026068	acyl-activating enzyme (AAE) consensus motif; other site
216591026069	CoA binding site [chemical binding]; other site
216591026070	3-hydroxy-acyl-CoA dehydrogenase; Validated; Region: PRK08268
216591026071	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
216591026072	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591026073	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591026074	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-term, score 4.5e-14
216591026075	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-term, score 1.2e-45
216591026076	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD bi, score 3.1e-74
216591026077	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 0.00063
216591026078	1 probable transmembrane helix predicted for BCAM1712 by TMHMM2.0 at aa 13-35
216591026079	Ca2+/H+ antiporter [Inorganic ion transport and metabolism]; Region: ChaA; COG0387
216591026080	11 probable transmembrane helices predicted for BCAM1713 by TMHMM2.0 at aa 13-30, 34-56, 68-90, 100-122, 134-156, 166-185, 215-237, 252-274, 287-309, 313-335 and 342-361
216591026081	HMMPfam hit to PF01699, Sodium/calcium exchanger protein, score 5.7e-22
216591026082	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
216591026083	2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most...; Region: PDC_hydrolase; cd01311
216591026084	active site
216591026085	HMMPfam hit to PF04909, Amidohydrolase, score 2.3e-50
216591026086	Putative D-isomer specific 2-hydroxyacid dehydrogenases; Region: 2-Hacid_dh_8; cd12167
216591026087	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
216591026088	putative ligand binding site [chemical binding]; other site
216591026089	putative NAD binding site [chemical binding]; other site
216591026090	catalytic site [active]
216591026091	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 2.3e-10
216591026092	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 5.9e-62
216591026093	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591026094	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591026095	DNA binding site [nucleotide binding]
216591026096	domain linker motif; other site
216591026097	Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_LacI_like_10; cd06292
216591026098	putative dimerization interface [polypeptide binding]; other site
216591026099	putative ligand binding site [chemical binding]; other site
216591026100	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 8.8e-08
216591026101	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 6.2e-08
216591026102	Predicted helix-turn-helix motif with score 1860.000, SD 5.52 at aa 6-27, sequence STIQDVARHAAVSVSTVSNVLN
216591026103	PS00356 Bacterial regulatory proteins, lacI family signature.
216591026104	TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]; Region: DctM; COG3090
216591026105	DctM-like transporters; Region: DctM; pfam06808
216591026106	TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]; Region: DctQ; COG1593
216591026107	17 probable transmembrane helices predicted for BCAM1717 by TMHMM2.0 at aa 32-54, 64-86, 107-126, 146-168, 175-197, 212-234, 255-277, 287-309, 338-360, 366-388, 408-430, 434-456, 468-490, 510-532, 537-554, 559-581 and 602-624
216591026108	HMMPfam hit to PF06808, DctM-like transporters, score 2.7e-109
216591026109	HMMPfam hit to PF04290, Tripartite ATP-independent periplasmic trans, score 1.8e-23
216591026110	TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: DctP; COG1638
216591026111	Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl15441
216591026112	HMMPfam hit to PF03480, Bacterial extracellular solute-binding prot, score 4.8e-50
216591026113	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
216591026114	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026115	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591026116	dimerization interface [polypeptide binding]; other site
216591026117	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-38
216591026118	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2e-19
216591026119	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026120	Predicted helix-turn-helix motif with score 1469.000, SD 4.19 at aa 17-38, sequence LHFGRAARRLFMTQPPLSRQIQ
216591026121	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
216591026122	Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; Region: HPPR; cd12156
216591026123	putative ligand binding site [chemical binding]; other site
216591026124	NAD binding site [chemical binding]; other site
216591026125	catalytic site [active]
216591026126	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 1.3e-24
216591026127	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 4e-63
216591026128	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026129	D-galactonate transporter; Region: 2A0114; TIGR00893
216591026130	putative substrate translocation pore; other site
216591026131	HMMPfam hit to PF00083, Sugar (and other) transporter score 0.00019
216591026132	12 probable transmembrane helices predicted for BCAM1721 by TMHMM2.0 at aa 37-59, 74-96, 103-125, 129-151, 172-191, 201-220, 273-295, 310-332, 345-364, 369-391, 404-426 and 431-453
216591026133	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.8e-56
216591026134	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591026135	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026136	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591026137	putative effector binding pocket; other site
216591026138	dimerization interface [polypeptide binding]; other site
216591026139	HMMPfam hit to PF03466, LysR substrate binding domain, score 4e-41
216591026140	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.4e-14
216591026141	Predicted helix-turn-helix motif with score 1215.000, SD 3.33 at aa 17-38, sequence GSFTAVAKEIDATTAQVSRAVS
216591026142	CBS-domain-containing membrane protein [Signal transduction mechanisms]; Region: COG3448
216591026143	HPP family; Region: HPP; pfam04982
216591026144	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
216591026145	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is...; Region: CBS_pair_HPP_assoc; cd04600
216591026146	HMMPfam hit to PF04982, HPP family, score 5.3e-45
216591026147	4 probable transmembrane helices predicted for BCAM1723 by TMHMM2.0 at aa 55-77, 84-106, 110-129 and 134-156
216591026148	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026149	HMMPfam hit to PF00571, CBS domain pair, score 5.4e-34
216591026150	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591026151	MarR family; Region: MarR_2; pfam12802
216591026152	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591026153	HMMPfam hit to PF01047, MarR family, score 0.00028
216591026154	Chloride channel protein EriC [Inorganic ion transport and metabolism]; Region: EriC; COG0038
216591026155	CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cd00400
216591026156	Cl- selectivity filter; other site
216591026157	Cl- binding residues [ion binding]; other site
216591026158	pore gating glutamate residue; other site
216591026159	dimer interface [polypeptide binding]; other site
216591026160	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC; Region: CBS_pair_SpoIVFB_EriC_assoc; cd04612
216591026161	11 probable transmembrane helices predicted for BCAM1725 by TMHMM2.0 at aa 21-43, 63-85, 118-140, 169-191, 198-217, 232-254, 267-286, 306-325, 332-354, 364-386 and 393-412
216591026162	HMMPfam hit to PF00654, Voltage gated chloride channel, score 4.6e-13
216591026163	HMMPfam hit to PF00571, CBS domain pair, score 1.9e-05
216591026164	Protein of unknown function (DUF1255); Region: DUF1255; pfam06865
216591026165	HMMPfam hit to PF06865, Protein of unknown function (DUF1255), score 5.4e-46
216591026166	PS00430 TonB-dependent receptor proteins signature 1.
216591026167	putative DNA-binding transcriptional regulator; Provisional; Region: PRK09791
216591026168	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026169	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591026170	dimerization interface [polypeptide binding]; other site
216591026171	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.9e-29
216591026172	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-21
216591026173	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026174	Predicted helix-turn-helix motif with score 1745.000, SD 5.13 at aa 16-37, sequence GSIRAAARRLNVSPAALTKAVK
216591026175	Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473
216591026176	M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666
216591026177	metal binding site [ion binding]; metal-binding site
216591026178	putative dimer interface [polypeptide binding]; other site
216591026179	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 6e-68
216591026180	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 6.5e-08
216591026181	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591026182	HMMPfam hit to PF00083, Sugar (and other) transporter score 1.3e-07
216591026183	12 probable transmembrane helices predicted for BCAM1730 by TMHMM2.0 at aa 25-47, 62-84, 96-118, 128-150, 171-193, 198-215, 252-274, 284-306, 318-336, 346-368, 381-403 and 413-430
216591026184	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.4e-15
216591026185	PS00216 Sugar transport proteins signature 1.
216591026186	PS00217 Sugar transport proteins signature 2.
216591026187	Isochorismatase family; Region: Isochorismatase; pfam00857
216591026188	Nicotinamidase_ related amidohydrolases.  Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia; Region: nicotinamidase_related; cd01014
216591026189	catalytic triad [active]
216591026190	conserved cis-peptide bond; other site
216591026191	HMMPfam hit to PF00857, Isochorismatase family, score 1.4e-10
216591026192	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591026193	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591026194	trimer interface [polypeptide binding]; other site
216591026195	eyelet of channel; other site
216591026196	HMMPfam hit to PF00267, Gram-negative porin, score 0.00088
216591026197	1 probable transmembrane helix predicted for BCAM1732 by TMHMM2.0 at aa 5-27
216591026198	Predicted membrane protein [Function unknown]; Region: COG2259
216591026199	4 probable transmembrane helices predicted for BCAM1733 by TMHMM2.0 at aa 21-43, 53-75, 80-102 and 117-136
216591026200	HMMPfam hit to PF07681, DoxX, score 4.1e-34
216591026201	Cytochrome c; Region: Cytochrom_C; pfam00034
216591026202	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591026203	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591026204	Cytochrome c; Region: Cytochrom_C; pfam00034
216591026205	HMMPfam hit to PF00034, Cytochrome c, score 1.1e-05
216591026206	PS00190 Cytochrome c family heme-binding site signature.
216591026207	PS00190 Cytochrome c family heme-binding site signature.
216591026208	PS00190 Cytochrome c family heme-binding site signature.
216591026209	Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303
216591026210	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591026211	HMMPfam hit to PF00732, GMC oxidoreductase, score 4.6e-05
216591026212	1 probable transmembrane helix predicted for BCAM1735 by TMHMM2.0 at aa 12-29
216591026213	Membrane bound FAD containing D-sorbitol dehydrogenase; Region: FAD-SLDH; pfam12318
216591026214	Bacterial Ig-like domain; Region: Big_5; pfam13205
216591026215	MG2 domain; Region: A2M_N; pfam01835
216591026216	Alpha-2-macroglobulin family N-terminal region; Region: A2M_N_2; pfam07703
216591026217	Alpha-2-macroglobulin family; Region: A2M; pfam00207
216591026218	1 probable transmembrane helix predicted for BCAM1737 by TMHMM2.0 at aa 20-42
216591026219	HMMPfam hit to PF01835, Alpha-2-macroglobulin family N-terminal regi, score 5.1e-33
216591026220	PS00017 ATP/GTP-binding site motif A (P-loop).
216591026221	penicillin-binding protein 1C; Region: PBP_1c; TIGR02073
216591026222	Transglycosylase; Region: Transgly; pfam00912
216591026223	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
216591026224	Penicillin-Binding Protein C-terminus Family; Region: BiPBP_C; pfam06832
216591026225	1 probable transmembrane helix predicted for BCAM1738 by TMHMM2.0 at aa 7-29
216591026226	HMMPfam hit to PF00912, Transglycosylase, score 1.9e-41
216591026227	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 9.5e-07
216591026228	1 probable transmembrane helix predicted for BCAM1739 by TMHMM2.0 at aa 84-106
216591026229	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026230	drug resistance transporter, Bcr/CflA subfamily; Region: efflux_Bcr_CflA; TIGR00710
216591026231	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026232	putative substrate translocation pore; other site
216591026233	11 probable transmembrane helices predicted for BCAM1741 by TMHMM2.0 at aa 30-52, 67-89, 96-115, 121-143, 156-175, 180-202, 235-257, 267-285, 306-328, 353-375 and 382-404
216591026234	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.2e-45
216591026235	1 probable transmembrane helix predicted for BCAM1742 by TMHMM2.0 at aa 21-43
216591026236	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591026237	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591026238	substrate binding pocket [chemical binding]; other site
216591026239	membrane-bound complex binding site; other site
216591026240	hinge residues; other site
216591026241	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 6.9e-47
216591026242	1 probable transmembrane helix predicted for BCAM1743 by TMHMM2.0 at aa 7-29
216591026243	Peptidase S8 family domain, uncharacterized subfamily 13; Region: Peptidases_S8_13; cd07496
216591026244	active site
216591026245	catalytic triad [active]
216591026246	HMMPfam hit to PF00082, Subtilase family, score 3.3e-65
216591026247	PS00138 Serine proteases, subtilase family, serine active site.
216591026248	magnesium-transporting ATPase; Provisional; Region: PRK15122
216591026249	Cation transporter/ATPase, N-terminus; Region: Cation_ATPase_N; smart00831
216591026250	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
216591026251	Putative hydrolase of sodium-potassium ATPase alpha subunit; Region: Hydrolase_like2; pfam13246
216591026252	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591026253	motif II; other site
216591026254	Cation transporting ATPase, C-terminus; Region: Cation_ATPase_C; pfam00689
216591026255	HMMPfam hit to PF00690, Cation transporter/ATPase, N-terminus, score 5.9e-22
216591026256	8 probable transmembrane helices predicted for BCAM1745 by TMHMM2.0 at aa 95-117, 122-141, 307-329, 339-361, 789-811, 826-848, 860-882 and 897-919
216591026257	HMMPfam hit to PF00122, E1-E2 ATPase, score 8.7e-73
216591026258	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1e-20
216591026259	PS00154 E1-E2 ATPases phosphorylation site.
216591026260	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026261	Predicted helix-turn-helix motif with score 1343.000, SD 3.76 at aa 33-54, sequence WSLPKIAKRAQLPMSTLRRVLT
216591026262	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
216591026263	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026264	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591026265	dimerization interface [polypeptide binding]; other site
216591026266	substrate binding pocket [chemical binding]; other site
216591026267	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.2e-32
216591026268	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.1e-22
216591026269	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026270	Predicted helix-turn-helix motif with score 1694.000, SD 4.96 at aa 16-37, sequence CHFSRAADALHMSQPALSKQIG
216591026271	Beta-lactamase enzyme family; Region: Beta-lactamase2; cl17872
216591026272	D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_S11; pfam00768
216591026273	1 probable transmembrane helix predicted for BCAM1748 by TMHMM2.0 at aa 13-32
216591026274	HMMPfam hit to PF00768, D-alanyl-D-alanine carboxypeptidase, score 1.7e-37
216591026275	PS00294 Prenyl group binding site (CAAX box).
216591026276	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591026277	MarR family; Region: MarR; pfam01047
216591026278	HMMPfam hit to PF01047, MarR family, score 5e-14
216591026279	Isochorismatase family; Region: Isochorismatase; pfam00857
216591026280	Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cd00431
216591026281	catalytic triad [active]
216591026282	conserved cis-peptide bond; other site
216591026283	HMMPfam hit to PF00857, Isochorismatase family, score 4.3e-41
216591026284	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026285	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591026286	putative substrate translocation pore; other site
216591026287	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.6e-52
216591026288	13 probable transmembrane helices predicted for BCAM1752 by TMHMM2.0 at aa 60-82, 89-111, 115-137, 149-171, 175-197, 209-226, 231-253, 273-295, 310-332, 339-361, 371-393, 406-425 and 440-462
216591026289	Probable gene remnant. Similar to the C-terminal region of Rhizobium loti (mesorhizobium loti) probable transcriptional regulator UniProt:Q98I96 (EMBL:BA000012 (299 aa) fasta scores: E()=3.8e-06, 58.000% id in 50 aa
216591026290	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
216591026291	Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659
216591026292	Sulfate transporter family; Region: Sulfate_transp; pfam00916
216591026293	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
216591026294	HMMPfam hit to PF01740, STAS domain, score 9.6e-14
216591026295	HMMPfam hit to PF00916, Sulfate transporter family, score 4.2e-53
216591026296	10 probable transmembrane helices predicted for BCAM1753A by TMHMM2.0 at aa 58-80, 100-122, 134-156, 189-208, 215-237, 261-283, 296-318, 333-352, 359-381 and 391-413
216591026297	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
216591026298	Mechanosensitive ion channel; Region: MS_channel; pfam00924
216591026299	5 probable transmembrane helices predicted for BCAM1754 by TMHMM2.0 at aa 10-32, 64-86, 90-112, 124-146 and 161-183
216591026300	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 6e-31
216591026301	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591026302	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591026303	DNA-binding site [nucleotide binding]; DNA binding site
216591026304	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591026305	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591026306	homodimer interface [polypeptide binding]; other site
216591026307	catalytic residue [active]
216591026308	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.6e-08
216591026309	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 8.6e-12
216591026310	oxidoreductase alpha (molybdopterin) subunit; Region: Fdhalpha-like; TIGR01701
216591026311	The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins; Region: MopB_ydeP; cd02767
216591026312	putative molybdopterin cofactor binding site [chemical binding]; other site
216591026313	The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region...; Region: MopB_CT_ydeP; cd02787
216591026314	putative molybdopterin cofactor binding site; other site
216591026315	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 2.8e-12
216591026316	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 2.2e-08
216591026317	Bestrophin, RFP-TM, chloride channel; Region: Bestrophin; pfam01062
216591026318	HMMPfam hit to PF05249, Uncharacterised protein family (UPF0187), score 8.6e-106
216591026319	3 probable transmembrane helices predicted for BCAM1757 by TMHMM2.0 at aa 13-35, 50-70 and 226-248
216591026320	Fusaric acid resistance protein family; Region: FUSC; pfam04632
216591026321	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591026322	Fusaric acid resistance protein family; Region: FUSC; pfam04632
216591026323	10 probable transmembrane helices predicted for BCAM1758 by TMHMM2.0 at aa 26-48, 79-98, 103-122, 129-151, 161-183, 365-387, 392-409, 416-438, 442-464 and 496-518
216591026324	HMMPfam hit to PF04632, Fusaric acid resistance protein conserved re, score 5.8e-39
216591026325	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591026326	LysR family transcriptional regulator; Provisional; Region: PRK14997
216591026327	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026328	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591026329	putative effector binding pocket; other site
216591026330	dimerization interface [polypeptide binding]; other site
216591026331	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.8e-17
216591026332	Predicted helix-turn-helix motif with score 1046.000, SD 2.75 at aa 16-37, sequence GSFTAASVELDMPLSRVSRKVK
216591026333	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.9e-41
216591026334	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591026335	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026336	putative substrate translocation pore; other site
216591026337	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026338	13 probable transmembrane helices predicted for BCAM1760 by TMHMM2.0 at aa 13-35, 55-77, 84-103, 113-135, 142-164, 170-192, 204-221, 231-253, 272-294, 309-331, 338-355, 370-392 and 483-500
216591026339	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.1e-56
216591026340	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026341	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_7; cd08512
216591026342	Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496
216591026343	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 7.4e-64
216591026344	PS00284 Serpins signature.
216591026345	Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]; Region: MntH; cl15845
216591026346	Natural resistance-associated macrophage protein; Region: Nramp; pfam01566
216591026347	11 probable transmembrane helices predicted for BCAM1764 by TMHMM2.0 at aa 36-55, 70-92, 113-135, 150-168, 175-197, 217-239, 265-287, 307-329, 349-371, 375-397 and 410-432
216591026348	HMMPfam hit to PF01566, Natural resistance-associated macrophage pro, score 1.7e-123
216591026349	bicupin, oxalate decarboxylase family; Region: bicupin_oxalic; TIGR03404
216591026350	Cupin; Region: Cupin_1; smart00835
216591026351	Cupin; Region: Cupin_1; smart00835
216591026352	HMMPfam hit to PF00190, Cupin, score 7.2e-26
216591026353	HMMPfam hit to PF07883, Cupin domain, score 4.9e-14
216591026354	HMMPfam hit to PF00190, Cupin, score 3.1e-18
216591026355	HMMPfam hit to PF07883, Cupin domain, score 2.8e-11
216591026356	HipA N-terminal domain; Region: Couple_hipA; pfam13657
216591026357	Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only]; Region: HipA; COG3550
216591026358	HipA-like N-terminal domain; Region: HipA_N; pfam07805
216591026359	HipA-like C-terminal domain; Region: HipA_C; pfam07804
216591026360	HMMPfam hit to PF07804, HipA-like C-terminal domain, score 2.5e-36
216591026361	HMMPfam hit to PF07805, HipA-like N-terminal domain, score 7.2e-22
216591026362	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl17200
216591026363	non-specific DNA binding site [nucleotide binding]; other site
216591026364	salt bridge; other site
216591026365	HMMPfam hit to PF01381, Helix-turn-helix, score 2.1e-07
216591026366	Predicted helix-turn-helix motif with score 1745.000, SD 5.13 at aa 24-45, sequence LTQAEAAARIGVGQSRLSSLET
216591026367	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
216591026368	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591026369	SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; Region: SIS; cl00389
216591026370	D-alanyl-D-alanine dipeptidase; Provisional; Region: PRK10178
216591026371	HMMPfam hit to PF01427, D-ala-D-ala dipeptidase, score 1.7e-43
216591026372	HMMPfam hit to PF02557, D-alanyl-D-alanine carboxypeptidase, score 1e-06
216591026373	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_7; cd08512
216591026374	Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496
216591026375	1 probable transmembrane helix predicted for BCAM1770 by TMHMM2.0 at aa 7-26
216591026376	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 3e-69
216591026377	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
216591026378	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591026379	dimer interface [polypeptide binding]; other site
216591026380	conserved gate region; other site
216591026381	putative PBP binding loops; other site
216591026382	ABC-ATPase subunit interface; other site
216591026383	7 probable transmembrane helices predicted for BCAM1771 by TMHMM2.0 at aa 27-49, 121-143, 156-178, 221-240, 270-292, 297-319 and 326-348
216591026384	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.4e-47
216591026385	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
216591026386	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591026387	dimer interface [polypeptide binding]; other site
216591026388	conserved gate region; other site
216591026389	putative PBP binding loops; other site
216591026390	ABC-ATPase subunit interface; other site
216591026391	6 probable transmembrane helices predicted for BCAM1772 by TMHMM2.0 at aa 40-62, 108-130, 151-173, 210-227, 232-249 and 269-291
216591026392	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.8e-43
216591026393	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
216591026394	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591026395	Walker A/P-loop; other site
216591026396	ATP binding site [chemical binding]; other site
216591026397	Q-loop/lid; other site
216591026398	ABC transporter signature motif; other site
216591026399	Walker B; other site
216591026400	D-loop; other site
216591026401	H-loop/switch region; other site
216591026402	HMMPfam hit to PF00005, ABC transporter score 2.9e-48
216591026403	PS00017 ATP/GTP-binding site motif A (P-loop).
216591026404	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
216591026405	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591026406	Walker A/P-loop; other site
216591026407	ATP binding site [chemical binding]; other site
216591026408	Q-loop/lid; other site
216591026409	ABC transporter signature motif; other site
216591026410	Walker B; other site
216591026411	D-loop; other site
216591026412	H-loop/switch region; other site
216591026413	HMMPfam hit to PF00005, ABC transporter score 3.7e-69
216591026414	PS00017 ATP/GTP-binding site motif A (P-loop).
216591026415	PS00211 ABC transporters family signature.
216591026416	Predicted membrane protein [Function unknown]; Region: COG2261
216591026417	3 probable transmembrane helices predicted for BCAM1775 by TMHMM2.0 at aa 4-21, 28-50 and 60-79
216591026418	HMMPfam hit to PF04226, Transglycosylase associated protein, score 2e-08
216591026419	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591026420	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591026421	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591026422	HMMPfam hit to PF01527, Transposase, score 0.0012
216591026423	Predicted helix-turn-helix motif with score 1296.000, SD 3.60 at aa 21-42, sequence AGTKTLAHRYGVGRTMVRRWVA
216591026424	HMMPfam hit to PF02178, AT hook motif, score 0.016
216591026425	putative transposase OrfB; Reviewed; Region: PHA02517
216591026426	HTH-like domain; Region: HTH_21; pfam13276
216591026427	Integrase core domain; Region: rve; pfam00665
216591026428	Integrase core domain; Region: rve_2; pfam13333
216591026429	PS00228 Tubulin-beta mRNA autoregulation signal.
216591026430	Predicted helix-turn-helix motif with score 1108.000, SD 2.96 at aa 8-29, sequence HPVAALLKAAGLARSTFYYQLK
216591026431	HMMPfam hit to PF00665, Integrase core domain, score 3.8e-47
216591026432	1 probable transmembrane helix predicted for BCAM1777A by TMHMM2.0 at aa 5-27
216591026433	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591026434	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026435	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591026436	substrate binding pocket [chemical binding]; other site
216591026437	dimerization interface [polypeptide binding]; other site
216591026438	HMMPfam hit to PF03466, LysR substrate binding domain, score 5e-32
216591026439	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.5e-21
216591026440	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026441	Predicted helix-turn-helix motif with score 2081.000, SD 6.27 at aa 20-41, sequence RSFTRAAEQLCITQGAVSRQIQ
216591026442	Beta-lactamase enzyme family; Region: Beta-lactamase2; pfam13354
216591026443	HMMPfam hit to PF00144, Beta-lactamase, score 6.4e-29
216591026444	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026445	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
216591026446	Peptidase family M23; Region: Peptidase_M23; pfam01551
216591026447	HMMPfam hit to PF01551, Peptidase family M23, score 7e-36
216591026448	HMMPfam hit to PF01476, LysM domain, score 3.6e-13
216591026449	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026450	1 probable transmembrane helix predicted for BCAM1780A by TMHMM2.0 at aa 26-48
216591026451	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591026452	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026453	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421
216591026454	putative dimerization interface [polypeptide binding]; other site
216591026455	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2e-15
216591026456	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026457	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.2e-41
216591026458	Predicted ester cyclase [General function prediction only]; Region: COG5485
216591026459	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 1.1e-51
216591026460	PS00017 ATP/GTP-binding site motif A (P-loop).
216591026461	7 probable transmembrane helices predicted for BCAM1784 by TMHMM2.0 at aa 13-35, 50-72, 79-98, 103-125, 132-154, 169-186 and 231-248
216591026462	HMMPfam hit to PF01925, Domain of unknown function DUF81, score 3.2e-34
216591026463	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591026464	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591026465	active site
216591026466	catalytic tetrad [active]
216591026467	HMMPfam hit to PF00248, Aldo/keto reductase family, score 4.1e-46
216591026468	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026469	transcriptional regulator; Provisional; Region: PRK10632
216591026470	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026471	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
216591026472	putative effector binding pocket; other site
216591026473	putative dimerization interface [polypeptide binding]; other site
216591026474	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.8e-16
216591026475	Predicted helix-turn-helix motif with score 1739.000, SD 5.11 at aa 17-38, sequence GSFTKAAEQLQLPRPTVSNAVQ
216591026476	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026477	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.8e-44
216591026478	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591026479	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591026480	trimer interface [polypeptide binding]; other site
216591026481	eyelet of channel; other site
216591026482	HMMPfam hit to PF00267, Gram-negative porin, score 9e-06
216591026483	1 probable transmembrane helix predicted for BCAM1787 by TMHMM2.0 at aa 5-27
216591026484	OpgC protein; Region: OpgC_C; pfam10129
216591026485	8 probable transmembrane helices predicted for BCAM1788 by TMHMM2.0 at aa 13-35, 50-67, 87-109, 141-163, 228-247, 262-284, 305-324 and 339-361
216591026486	S-formylglutathione hydrolase; Region: PLN02442
216591026487	Putative esterase; Region: Esterase; pfam00756
216591026488	HMMPfam hit to PF00756, Putative esterase, score 1.3e-23
216591026489	PS00041 Bacterial regulatory proteins, araC family signature.
216591026490	Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303
216591026491	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591026492	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 2.5e-05
216591026493	HMMPfam hit to PF00732, GMC oxidoreductase, score 2.7e-05
216591026494	Membrane bound FAD containing D-sorbitol dehydrogenase; Region: FAD-SLDH; pfam12318
216591026495	1 probable transmembrane helix predicted for BCAM1791 by TMHMM2.0 at aa 20-42
216591026496	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591026497	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591026498	Cytochrome c; Region: Cytochrom_C; pfam00034
216591026499	HMMPfam hit to PF00034, Cytochrome c, score 0.013
216591026500	PS00190 Cytochrome c family heme-binding site signature.
216591026501	PS00190 Cytochrome c family heme-binding site signature.
216591026502	PS00190 Cytochrome c family heme-binding site signature.
216591026503	CDS contains a nonsense mutation (amber) after codon 125
216591026504	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.5e-06
216591026505	PS00061 Short-chain dehydrogenases/reductases family signature.
216591026506	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591026507	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
216591026508	NAD(P) binding site [chemical binding]; other site
216591026509	active site
216591026510	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0034
216591026511	HMMPfam hit to PF05368, NmrA-like family, score 9.9e-10
216591026512	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591026513	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026514	The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold; Region: PBP2_Nitroaromatics_like; cd08417
216591026515	substrate binding pocket [chemical binding]; other site
216591026516	dimerization interface [polypeptide binding]; other site
216591026517	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.7e-17
216591026518	Predicted helix-turn-helix motif with score 1197.000, SD 3.26 at aa 27-48, sequence RSVTRAGMRLGLTQPAASRALG
216591026519	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026520	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.1e-20
216591026521	Ion channel; Region: Ion_trans_2; pfam07885
216591026522	K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569
216591026523	TrkA-N domain; Region: TrkA_N; pfam02254
216591026524	HMMPfam hit to PF02254, TrkA-N domain, score 7.5e-31
216591026525	HMMPfam hit to PF07885, Ion channel, score 1.9e-10
216591026526	3 probable transmembrane helices predicted for BCAM1797 by TMHMM2.0 at aa 42-61, 76-98 and 110-132
216591026527	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591026528	hydroxyglutarate oxidase; Provisional; Region: PRK11728
216591026529	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 2e-95
216591026530	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 0.00095
216591026531	1 probable transmembrane helix predicted for BCAM1798 by TMHMM2.0 at aa 20-42
216591026532	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026533	BetR domain; Region: BetR; pfam08667
216591026534	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cl17736
216591026535	active site
216591026536	phosphorylation site [posttranslational modification]
216591026537	intermolecular recognition site; other site
216591026538	dimerization interface [polypeptide binding]; other site
216591026539	Predicted helix-turn-helix motif with score 992.000, SD 2.57 at aa 30-51, sequence QQTTELCRILDLSFSQGHRKLR
216591026540	Part of AAA domain; Region: AAA_19; pfam13245
216591026541	Family description; Region: UvrD_C_2; pfam13538
216591026542	PS00017 ATP/GTP-binding site motif A (P-loop).
216591026543	Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_1; pfam12729
216591026544	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
216591026545	dimer interface [polypeptide binding]; other site
216591026546	ligand binding site [chemical binding]; other site
216591026547	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591026548	dimerization interface [polypeptide binding]; other site
216591026549	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591026550	dimer interface [polypeptide binding]; other site
216591026551	putative CheW interface [polypeptide binding]; other site
216591026552	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 8.8e-96
216591026553	PS00538 Bacterial chemotaxis sensory transducers signature.
216591026554	HMMPfam hit to PF00672, HAMP domain, score 8.4e-11
216591026555	2 probable transmembrane helices predicted for BCAM1804 by TMHMM2.0 at aa 15-37 and 198-220
216591026556	methyl viologen resistance protein SmvA; Provisional; Region: PRK14995
216591026557	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026558	putative substrate translocation pore; other site
216591026559	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026560	14 probable transmembrane helices predicted for BCAM1805 by TMHMM2.0 at aa 20-42, 62-81, 88-107, 117-139, 151-170, 175-197, 210-227, 240-257, 277-299, 314-336, 343-365, 375-397, 410-432 and 473-495
216591026561	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.3e-64
216591026562	quinone oxidoreductase, NADPH-dependent; Provisional; Region: PRK10754
216591026563	Quinone oxidoreductase (QOR); Region: QOR2; cd05286
216591026564	NADP binding site [chemical binding]; other site
216591026565	dimer interface [polypeptide binding]; other site
216591026566	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 7e-33
216591026567	PS01162 Quinone oxidoreductase / zeta-crystallin signature.
216591026568	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 4e-20
216591026569	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591026570	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026571	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591026572	dimerization interface [polypeptide binding]; other site
216591026573	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.6e-17
216591026574	Predicted helix-turn-helix motif with score 1267.000, SD 3.50 at aa 16-37, sequence GSLSAAARALQVQHSTVARRID
216591026575	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.2e-30
216591026576	Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]; Region: COG1247
216591026577	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.5e-13
216591026578	Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily; Region: HTH_MerR-like_sg2; cd04778
216591026579	MerR HTH family regulatory protein; Region: MerR_1; pfam13411
216591026580	DNA binding residues [nucleotide binding]
216591026581	putative dimer interface [polypeptide binding]; other site
216591026582	HMMPfam hit to PF00376, MerR family regulatory protein, score 2.6e-07
216591026583	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
216591026584	DNA-binding site [nucleotide binding]; DNA binding site
216591026585	RNA-binding motif; other site
216591026586	HMMPfam hit to PF00313, 'Cold-shock' DNA-binding domain, score 4e-38
216591026587	PS00352 'Cold-shock' DNA-binding domain signature.
216591026588	Agmatinase-like family includes proclavaminic acid amidinohydrolase; Region: Agmatinase_PAH; cd11592
216591026589	oligomer interface [polypeptide binding]; other site
216591026590	putative active site [active]
216591026591	Mn binding site [ion binding]; other site
216591026592	HMMPfam hit to PF00491, Arginase family, score 1.3e-66
216591026593	PS01053 Arginase family signature 3.
216591026594	PS00148 Arginase family signature 2.
216591026595	PS00147 Arginase family signature 1.
216591026596	YhhN-like protein; Region: YhhN; pfam07947
216591026597	6 probable transmembrane helices predicted for BCAM1813 by TMHMM2.0 at aa 35-57, 105-127, 134-156, 160-182, 189-211 and 215-237
216591026598	HMMPfam hit to PF07947, YhhN-like protein, score 1.3e-35
216591026599	Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]; Region: TrkA; COG2072
216591026600	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox_3; pfam13738
216591026601	short chain dehydrogenase; Provisional; Region: PRK07832
216591026602	classical (c) SDRs; Region: SDR_c; cd05233
216591026603	NAD(P) binding site [chemical binding]; other site
216591026604	active site
216591026605	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.7e-24
216591026606	PS00061 Short-chain dehydrogenases/reductases family signature.
216591026607	Predicted metal-dependent hydrolase; Region: Metal_hydrol; pfam10118
216591026608	Predicted metal-dependent hydrolase [General function prediction only]; Region: COG3687
216591026609	1 probable transmembrane helix predicted for BCAM1816 by TMHMM2.0 at aa 183-205
216591026610	PS00213 Lipocalin signature.
216591026611	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591026612	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591026613	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3.8e-18
216591026614	Putative glycolipid-binding; Region: Glycolipid_bind; pfam06475
216591026615	HMMPfam hit to PF06475, Protein of unknown function (DUF1089), score 5.8e-74
216591026616	Urea transporter; Region: UT; cl01829
216591026617	HMMPfam hit to PF03253, Urea transporter score 5e-14
216591026618	7 probable transmembrane helices predicted for BCAM1819 by TMHMM2.0 at aa 15-37, 44-66, 81-112, 125-147, 169-191, 198-220 and 256-278
216591026619	aldolase II superfamily protein; Provisional; Region: PRK07044
216591026620	intersubunit interface [polypeptide binding]; other site
216591026621	active site
216591026622	Zn2+ binding site [ion binding]; other site
216591026623	HMMPfam hit to PF00596, Class II Aldolase and Adducin N-terminal, score 3.2e-54
216591026624	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591026625	4-oxalocrotonate tautomerase; Provisional; Region: PRK00745
216591026626	active site 1 [active]
216591026627	dimer interface [polypeptide binding]; other site
216591026628	hexamer interface [polypeptide binding]; other site
216591026629	active site 2 [active]
216591026630	HMMPfam hit to PF01361, Tautomerase enzyme, score 3.5e-12
216591026631	Bacterial NAD-glutamate dehydrogenase; Region: Bac_GDH; pfam05088
216591026632	HMMPfam hit to PF05088, Bacterial NAD-glutamate dehydrogenase, score 0
216591026633	Predicted helix-turn-helix motif with score 1101.000, SD 2.94 at aa 785-806, sequence RTNYFLADANGESKPYLSFKFN
216591026634	O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3315
216591026635	Leucine carboxyl methyltransferase; Region: LCM; pfam04072
216591026636	HMMPfam hit to PF02409, O-methyltransferase N-terminus, score 6.8e-08
216591026637	Glyoxalase-like domain; Region: Glyoxalase_2; pfam12681
216591026638	N-acetyltransferase; Region: Acetyltransf_2; pfam00797
216591026639	HMMPfam hit to PF00797, N-acetyltransferase, score 2.1e-108
216591026640	amidase; Provisional; Region: PRK07486
216591026641	Amidase; Region: Amidase; pfam01425
216591026642	HMMPfam hit to PF01425, Amidase, score 8.2e-97
216591026643	PS00571 Amidases signature.
216591026644	PS00017 ATP/GTP-binding site motif A (P-loop).
216591026645	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
216591026646	Ligand Binding Site [chemical binding]; other site
216591026647	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591026648	HMMPfam hit to PF07858, Limonene-1,2-epoxide hydrolase catalytic dom, score 0.0016
216591026649	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 4.1e-06
216591026650	Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP); Region: GATase1_ScBLP_like; cd03144
216591026651	conserved cys residue [active]
216591026652	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated; Region: PRK09238
216591026653	Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in...; Region: AcnB_Swivel; cd01576
216591026654	substrate binding site [chemical binding]; other site
216591026655	Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle; Region: AcnB; cd01581
216591026656	substrate binding site [chemical binding]; other site
216591026657	ligand binding site [chemical binding]; other site
216591026658	HMMPfam hit to PF06434, Aconitate hydratase, score 2.5e-278
216591026659	HMMPfam hit to PF00330, Aconitase family (aconitate hydratase), score 9.3e-12
216591026660	PS00450 Aconitase family signature 1.
216591026661	Domain of unknown function (DUF4274); Region: DUF4274; pfam14096
216591026662	Domain of unknown function found in archaea, bacteria, and plants; Region: DUF296; cd11378
216591026663	trimer interface [polypeptide binding]; other site
216591026664	putative Zn binding site [ion binding]; other site
216591026665	HMMPfam hit to PF03479, Domain of unknown function (DUF296), score 1.8e-14
216591026666	2 probable transmembrane helices predicted for BCAM1836 by TMHMM2.0 at aa 77-99 and 121-143
216591026667	ADP-ribosylglycohydrolase; Region: ADP_ribosyl_GH; pfam03747
216591026668	HMMPfam hit to PF03747, ADP-ribosylglycohydrolase, score 2.1e-43
216591026669	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
216591026670	homotrimer interaction site [polypeptide binding]; other site
216591026671	putative active site [active]
216591026672	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 3.3e-12
216591026673	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
216591026674	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591026675	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 7.6e-08
216591026676	benzoate transport; Region: 2A0115; TIGR00895
216591026677	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026678	putative substrate translocation pore; other site
216591026679	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026680	HMMPfam hit to PF00083, Sugar (and other) transporter score 1e-25
216591026681	12 probable transmembrane helices predicted for BCAM1841 by TMHMM2.0 at aa 43-65, 75-97, 104-126, 130-152, 165-187, 191-213, 279-301, 316-335, 342-364, 368-390, 403-422 and 432-454
216591026682	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.7e-44
216591026683	PS00216 Sugar transport proteins signature 1.
216591026684	PS00217 Sugar transport proteins signature 2.
216591026685	phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional; Region: PRK09754
216591026686	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591026687	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 7e-45
216591026688	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 3.8e-28
216591026689	2,3-dihydroxybiphenyl 1,2-dioxygenase; Region: 23dbph12diox; TIGR03213
216591026690	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632
216591026691	active site
216591026692	metal binding site [ion binding]; metal-binding site
216591026693	C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion; Region: MhqB_like_C; cd08360
216591026694	putative active site [active]
216591026695	putative metal binding site [ion binding]; other site
216591026696	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 1.8e-09
216591026697	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591026698	Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like; Region: ALDH_DhaS; cd07114
216591026699	NAD(P) binding site [chemical binding]; other site
216591026700	catalytic residues [active]
216591026701	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.1e-234
216591026702	PS00070 Aldehyde dehydrogenases cysteine active site.
216591026703	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591026704	L-aspartate dehydrogenase; Provisional; Region: PRK13303
216591026705	Homoserine dehydrogenase, NAD binding domain; Region: NAD_binding_3; pfam03447
216591026706	Domain of unknown function DUF108; Region: DUF108; pfam01958
216591026707	HMMPfam hit to PF01958, Domain of unknown function DUF108, score 9.7e-58
216591026708	HMMPfam hit to PF03447, Homoserine dehydrogenase, NAD binding d, score 1.9e-11
216591026709	hypothetical protein; Provisional; Region: PRK07064
216591026710	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
216591026711	PYR/PP interface [polypeptide binding]; other site
216591026712	dimer interface [polypeptide binding]; other site
216591026713	TPP binding site [chemical binding]; other site
216591026714	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591026715	Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cd00568
216591026716	TPP-binding site [chemical binding]; other site
216591026717	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 3.2e-35
216591026718	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 4e-07
216591026719	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591026720	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 2e-28
216591026721	short chain dehydrogenase; Provisional; Region: PRK07062
216591026722	putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; Region: BKR_like_SDR_like; cd05344
216591026723	putative NAD(P) binding site [chemical binding]; other site
216591026724	putative active site [active]
216591026725	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.9e-13
216591026726	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591026727	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591026728	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591026729	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 3.7e-10
216591026730	Predicted helix-turn-helix motif with score 1389.000, SD 3.92 at aa 41-62, sequence LGAPELSKRLGIPRTTVFRLLQ
216591026731	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591026732	Serine hydrolase; Region: Ser_hydrolase; cl17834
216591026733	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3.3e-20
216591026734	Cupin domain; Region: Cupin_2; pfam07883
216591026735	HMMPfam hit to PF07883, Cupin domain, score 9.4e-11
216591026736	short chain dehydrogenase; Provisional; Region: PRK12939
216591026737	classical (c) SDRs; Region: SDR_c; cd05233
216591026738	NAD(P) binding site [chemical binding]; other site
216591026739	active site
216591026740	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.4e-21
216591026741	PS00061 Short-chain dehydrogenases/reductases family signature.
216591026742	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
216591026743	Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469
216591026744	[2Fe-2S] cluster binding site [ion binding]; other site
216591026745	START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643
216591026746	hydrophobic ligand binding site; other site
216591026747	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 7.9e-26
216591026748	Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a...; Region: Rieske_RO_ferredoxin; cd03528
216591026749	[2Fe-2S] cluster binding site [ion binding]; other site
216591026750	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 2e-21
216591026751	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591026752	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591026753	trimer interface [polypeptide binding]; other site
216591026754	eyelet of channel; other site
216591026755	HMMPfam hit to PF00267, Gram-negative porin, score 9.4e-06
216591026756	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591026757	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591026758	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591026759	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 3.1e-20
216591026760	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy_2; pfam13532
216591026761	HMMPfam hit to PF03171, 2OG-Fe(II) oxygenase superfamily, score 0.0012
216591026762	Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain; Region: MPP_YkuE_C; cd07385
216591026763	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
216591026764	putative active site [active]
216591026765	putative metal binding site [ion binding]; other site
216591026766	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 1.9e-16
216591026767	4 probable transmembrane helices predicted for BCAM1861 by TMHMM2.0 at aa 3-25, 35-57, 64-86 and 113-132
216591026768	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591026769	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026770	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421
216591026771	putative dimerization interface [polypeptide binding]; other site
216591026772	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 8.9e-17
216591026773	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026774	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.6e-40
216591026775	3 probable transmembrane helices predicted for BCAM1863 by TMHMM2.0 at aa 12-30, 40-62 and 74-96
216591026776	multidrug resistance protein MdtN; Provisional; Region: PRK10476
216591026777	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591026778	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591026779	1 probable transmembrane helix predicted for BCAM1864 by TMHMM2.0 at aa 13-32
216591026780	HMMPfam hit to PF00529, HlyD family secretion protein, score 8.1e-32
216591026781	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591026782	9 probable transmembrane helices predicted for BCAM1865 by TMHMM2.0 at aa 28-50, 71-93, 98-117, 124-143, 153-175, 416-438, 442-464, 469-491 and 501-520
216591026783	type I secretion outer membrane protein, TolC family; Region: type_I_sec_TolC; TIGR01844
216591026784	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026785	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.1e-26
216591026786	HMMPfam hit to PF02321, Outer membrane efflux protein, score 7.1e-32
216591026787	Uncharacterized membrane protein [Function unknown]; Region: SapB; COG1285
216591026788	MgtC family; Region: MgtC; pfam02308
216591026789	4 probable transmembrane helices predicted for BCAM1867 by TMHMM2.0 at aa 5-22, 29-51, 56-78 and 91-113
216591026790	HMMPfam hit to PF02308, MgtC family, score 3.3e-46
216591026791	DNA-binding transcriptional activator SdiA; Provisional; Region: PRK10188
216591026792	Autoinducer binding domain; Region: Autoind_bind; pfam03472
216591026793	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591026794	DNA binding residues [nucleotide binding]
216591026795	dimerization interface [polypeptide binding]; other site
216591026796	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 3.7e-23
216591026797	PS00622 Bacterial regulatory proteins, luxR family signature.
216591026798	Predicted helix-turn-helix motif with score 1403.000, SD 3.97 at aa 191-212, sequence KTACEIGQILSISERTVNFHVN
216591026799	HMMPfam hit to PF03472, Autoinducer binding domain, score 1.4e-48
216591026800	Autoinducer synthetase; Region: Autoind_synth; cl17404
216591026801	HMMPfam hit to PF00765, Autoinducer synthetase, score 3.6e-12
216591026802	Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR); Region: HMG-CoA_reductase; cl00205
216591026803	2 probable transmembrane helices predicted for BCAM1872 by TMHMM2.0 at aa 28-50 and 65-87
216591026804	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cd06587
216591026805	active site
216591026806	metal binding site [ion binding]; metal-binding site
216591026807	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591026808	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 4.6e-05
216591026809	HMMPfam hit to PF00925, GTP cyclohydrolase II, score 2.6e-97
216591026810	BcenGI13
216591026811	Virulence-associated protein E; Region: VirE; pfam05272
216591026812	HMMPfam hit to PF05272, Virulence-associated protein E, score 9.4e-31
216591026813	PS00017 ATP/GTP-binding site motif A (P-loop).
216591026814	HMMPfam hit to PF01402, Ribbon-helix-helix protein, copG family, score 0.00029
216591026815	1 probable transmembrane helix predicted for BCAM1878A by TMHMM2.0 at aa 7-29
216591026816	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026817	Prophage antirepressor [Transcription]; Region: COG3617
216591026818	BRO family, N-terminal domain; Region: Bro-N; smart01040
216591026819	Phage antirepressor protein KilAC domain; Region: ANT; cl01462
216591026820	HMMPfam hit to PF02498, BRO family, N-terminal domain, score 3.1e-23
216591026821	ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell; Region: ADP_ribosyl; cl00283
216591026822	Protein of unknown function DUF72; Region: DUF72; pfam01904
216591026823	HMMPfam hit to PF01904, Protein of unknown function DUF72, score 4.2e-63
216591026824	H-NS histone family; Region: Histone_HNS; pfam00816
216591026825	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
216591026826	HNH endonuclease; Region: HNH_3; pfam13392
216591026827	HMMPfam hit to PF01844, HNH endonuclease, score 1.1e-07
216591026828	Terminase-like family; Region: Terminase_6; pfam03237
216591026829	chromosome segregation protein; Provisional; Region: PRK03918
216591026830	1 probable transmembrane helix predicted for BCAM1897 by TMHMM2.0 at aa 86-108
216591026831	phage baseplate assembly protein V; Region: phage_P2_V; TIGR01644
216591026832	PS00217 Sugar transport proteins signature 2.
216591026833	1 probable transmembrane helix predicted for BCAM1904 by TMHMM2.0 at aa 102-124
216591026834	PS00287 Cysteine proteases inhibitors signature.
216591026835	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591026836	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
216591026837	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
216591026838	HMMPfam hit to PF01609, Transposase DDE domain, score 1.3e-29
216591026839	Malate/L-lactate dehydrogenase; Region: Ldh_2; cl00900
216591026840	SPRY domain; Region: SPRY; cl02614
216591026841	SPRY domain-like in bacteria; Region: SPRY_like; cd12886
216591026842	HMMPfam hit to PF00622, SPRY domain, score 0.00081
216591026843	Transposase; Region: HTH_Tnp_1; pfam01527
216591026844	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591026845	CDS lacks appropriate translational start site. It is likely that this CDS encodes the C-terminal region of a larger protein encompassing the upstream CDS. A translational frameshift possibly occurs after residue 86 of the upstream overlapping CDS
216591026846	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591026847	lysozyme_like domain.  This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases; Region: lysozyme_like; cl00222
216591026848	catalytic residue [active]
216591026849	Domain of unknown function (DUF4279); Region: DUF4279; pfam14106
216591026850	1 probable transmembrane helix predicted for BCAM1921 by TMHMM2.0 at aa 78-100
216591026851	Helix-turn-helix domain; Region: HTH_36; pfam13730
216591026852	Predicted helix-turn-helix motif with score 1451.000, SD 4.13 at aa 63-84, sequence MSHAAIAQCMDIAERTVRNAID
216591026853	Similar to Rhodopseudomonas palustris phage integrase SWALL:Q6N160 (EMBL:BX572607) (460 aa) fasta scores: E(): 5.3, 24.6% id in 439 aa. CDS is disrupted by the insertion of an IS element after codon 61
216591026854	HMMPfam hit to PF00589, Phage integrase family, score 4.3e-05
216591026855	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
216591026856	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
216591026857	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
216591026858	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
216591026859	HMMPfam hit to PF01609, Transposase DDE domain, score 3.6e-32
216591026860	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair_10; cd04623
216591026861	FOG: CBS domain [General function prediction only]; Region: COG0517
216591026862	HMMPfam hit to PF00571, CBS domain pair, score 1.4e-30
216591026863	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591026864	nucleoside diphosphate kinase regulator; Provisional; Region: PRK05753
216591026865	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
216591026866	HMMPfam hit to PF01272, Prokaryotic transcription elongation factor, score 6.5e-05
216591026867	putative transposase OrfB; Reviewed; Region: PHA02517
216591026868	Integrase core domain; Region: rve; pfam00665
216591026869	Integrase core domain; Region: rve_3; pfam13683
216591026870	HMMPfam hit to PF00665, Integrase core domain, score 1.1e-35
216591026871	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591026872	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591026873	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591026874	trimer interface [polypeptide binding]; other site
216591026875	eyelet of channel; other site
216591026876	HMMPfam hit to PF00267, Gram-negative porin, score 1.8e-08
216591026877	Predicted transcriptional regulators [Transcription]; Region: COG1733
216591026878	HxlR-like helix-turn-helix; Region: HxlR; pfam01638
216591026879	HMMPfam hit to PF01638, HxlR-like helix-turn-helix, score 4.9e-28
216591026880	Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109
216591026881	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 5.6e-11
216591026882	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591026883	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591026884	DNA binding residues [nucleotide binding]
216591026885	dimerization interface [polypeptide binding]; other site
216591026886	HMMPfam hit to PF08281, Sigma-70, region, score 0.0016
216591026887	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 9.9e-13
216591026888	PS00622 Bacterial regulatory proteins, luxR family signature.
216591026889	Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]; Region: COG1574
216591026890	YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling; Region: YtcJ_like; cd01300
216591026891	active site
216591026892	HMMPfam hit to PF07969, Amidohydrolase family, score 2.6e-74
216591026893	Isochorismatase family; Region: Isochorismatase; pfam00857
216591026894	Nicotinamidase_ related amidohydrolases.  Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia; Region: nicotinamidase_related; cd01014
216591026895	catalytic triad [active]
216591026896	conserved cis-peptide bond; other site
216591026897	HMMPfam hit to PF00857, Isochorismatase family, score 3.9e-15
216591026898	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591026899	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591026900	putative substrate translocation pore; other site
216591026901	12 probable transmembrane helices predicted for BCAM1937 by TMHMM2.0 at aa 36-58, 78-100, 113-135, 140-162, 174-196, 206-228, 257-279, 294-316, 328-345, 349-371, 383-405 and 410-432
216591026902	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.5e-32
216591026903	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632
216591026904	active site
216591026905	metal binding site [ion binding]; metal-binding site
216591026906	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 0.0052
216591026907	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591026908	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
216591026909	NAD(P) binding site [chemical binding]; other site
216591026910	active site
216591026911	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.1e-23
216591026912	PS00216 Sugar transport proteins signature 1.
216591026913	PS00061 Short-chain dehydrogenases/reductases family signature.
216591026914	Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456
216591026915	Permease for cytosine/purines, uracil, thiamine, allantoin; Region: Transp_cyt_pur; pfam02133
216591026916	Na binding site [ion binding]; other site
216591026917	12 probable transmembrane helices predicted for BCAM1940 by TMHMM2.0 at aa 32-54, 59-81, 102-124, 139-161, 173-192, 207-229, 249-271, 295-317, 330-352, 362-384, 416-438 and 448-470
216591026918	HMMPfam hit to PF02133, Permease for cytosine/purines, uracil,, score 2e-23
216591026919	GSH-dependent disulfide bond oxidoreductase; Provisional; Region: PRK13972
216591026920	GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources...; Region: GST_N_Ure2p_like; cd03048
216591026921	C-terminal domain interface [polypeptide binding]; other site
216591026922	GSH binding site (G-site) [chemical binding]; other site
216591026923	dimer interface [polypeptide binding]; other site
216591026924	C-terminal, alpha helical domain of Ure2p and related Glutathione S-transferase-like proteins; Region: GST_C_Ure2p_like; cd03178
216591026925	dimer interface [polypeptide binding]; other site
216591026926	N-terminal domain interface [polypeptide binding]; other site
216591026927	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 3.9e-14
216591026928	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 4.5e-12
216591026929	pyruvate dehydrogenase subunit E1; Reviewed; Region: aceE; PRK09405
216591026930	MarR family; Region: MarR_2; cl17246
216591026931	HMMPfam hit to PF01047, MarR family, score 6e-08
216591026932	PS01117 Bacterial regulatory proteins, marR family signature.
216591026933	pyruvate dehydrogenase subunit E1; Reviewed; Region: aceE; PRK09405
216591026934	Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative...; Region: TPP_E1_EcPDC_like; cd02017
216591026935	dimer interface [polypeptide binding]; other site
216591026936	TPP-binding site [chemical binding]; other site
216591026937	Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes; Region: TPP_enzyme_PYR; cl11410
216591026938	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591026939	HMMPfam hit to PF02321, Outer membrane efflux protein, score 5.2e-31
216591026940	HMMPfam hit to PF02321, Outer membrane efflux protein, score 5.7e-33
216591026941	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
216591026942	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591026943	12 probable transmembrane helices predicted for BCAM1946 by TMHMM2.0 at aa 12-34, 343-362, 369-391, 397-419, 440-462, 472-494, 549-571, 876-898, 905-927, 932-954, 975-997 and 1012-1034
216591026944	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591026945	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591026946	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591026947	HMMPfam hit to PF00529, HlyD family secretion protein, score 8.2e-46
216591026948	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591026949	Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator; Region: HTH_SoxR; cd01110
216591026950	redox-sensitive transcriptional activator SoxR; Region: SoxR; TIGR01950
216591026951	DNA binding residues [nucleotide binding]
216591026952	dimer interface [polypeptide binding]; other site
216591026953	[2Fe-2S] cluster binding site [ion binding]; other site
216591026954	Predicted helix-turn-helix motif with score 1539.000, SD 4.43 at aa 12-33, sequence MSIREVAARSGVPASTLRFYET
216591026955	HMMPfam hit to PF00376, MerR family regulatory protein, score 8.5e-10
216591026956	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
216591026957	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591026958	NAD(P) binding site [chemical binding]; other site
216591026959	active site
216591026960	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00025
216591026961	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.8e-19
216591026962	PS00061 Short-chain dehydrogenases/reductases family signature.
216591026963	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591026964	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591026965	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591026966	dimerization interface [polypeptide binding]; other site
216591026967	substrate binding pocket [chemical binding]; other site
216591026968	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.4e-21
216591026969	Predicted helix-turn-helix motif with score 1406.000, SD 3.98 at aa 17-38, sequence LSFRRAAERLHMAQPPLSAAIR
216591026970	PS00044 Bacterial regulatory proteins, lysR family signature.
216591026971	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.1e-49
216591026972	Truncated by IS element. N terminal 83 amino acids missing. Similar to the C-terminal region ofBurkholderia cenocepacia HI2424 transcriptional regulator, TetR family UniProt:A0B1F8 (EMBL:CP000459 (219 aa) fasta scores: E()=3.8e-47, 94.030% id in 134 aa
216591026973	putative transposase OrfB; Reviewed; Region: PHA02517
216591026974	HTH-like domain; Region: HTH_21; pfam13276
216591026975	Integrase core domain; Region: rve; pfam00665
216591026976	Integrase core domain; Region: rve_3; pfam13683
216591026977	HMMPfam hit to PF00665, Integrase core domain, score 9.5e-40
216591026978	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
216591026979	DNA-binding interface [nucleotide binding]; DNA binding site
216591026980	HMMPfam hit to PF01527, Transposase, score 8.2e-25
216591026981	Predicted helix-turn-helix motif with score 1325.000, SD 3.70 at aa 22-43, sequence TPVAEVCRKMGISDATFYNWRT
216591026982	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
216591026983	Sodium:dicarboxylate symporter family; Region: SDF; cl00573
216591026984	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 6e-102
216591026985	8 probable transmembrane helices predicted for BCAM1954 by TMHMM2.0 at aa 7-26, 48-70, 82-104, 154-172, 199-221, 231-250, 302-324 and 334-356
216591026986	Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; COG0405
216591026987	Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019
216591026988	HMMPfam hit to PF01019, Gamma-glutamyltranspeptidase, score 2.7e-247
216591026989	PS00462 Gamma-glutamyltranspeptidase signature.
216591026990	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
216591026991	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591026992	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
216591026993	putative active site [active]
216591026994	HMMPfam hit to PF01418, Helix-turn-helix domain, rpiR family, score 5.3e-06
216591026995	Predicted helix-turn-helix motif with score 1146.000, SD 3.09 at aa 39-60, sequence GPIAQVAKQAEVSDPTVFRFVV
216591026996	HMMPfam hit to PF01380, SIS domain, score 1.6e-10
216591026997	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591026998	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591026999	Walker A/P-loop; other site
216591027000	ATP binding site [chemical binding]; other site
216591027001	Q-loop/lid; other site
216591027002	ABC transporter signature motif; other site
216591027003	Walker B; other site
216591027004	D-loop; other site
216591027005	H-loop/switch region; other site
216591027006	ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit; Region: ABC_transp; pfam09821
216591027007	HMMPfam hit to PF00005, ABC transporter score 6.9e-57
216591027008	PS00211 ABC transporters family signature.
216591027009	PS00017 ATP/GTP-binding site motif A (P-loop).
216591027010	ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]; Region: COG4986
216591027011	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591027012	dimer interface [polypeptide binding]; other site
216591027013	conserved gate region; other site
216591027014	putative PBP binding loops; other site
216591027015	ABC-ATPase subunit interface; other site
216591027016	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591027017	putative PBP binding loops; other site
216591027018	dimer interface [polypeptide binding]; other site
216591027019	ABC-ATPase subunit interface; other site
216591027020	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.9e-07
216591027021	12 probable transmembrane helices predicted for BCAM1958 by TMHMM2.0 at aa 26-48, 68-90, 103-125, 135-157, 207-229, 244-266, 342-364, 384-406, 418-440, 450-472, 493-515 and 551-570
216591027022	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1e-05
216591027023	1 probable transmembrane helix predicted for BCAM1959 by TMHMM2.0 at aa 20-42
216591027024	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027025	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
216591027026	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
216591027027	active site
216591027028	metal binding site [ion binding]; metal-binding site
216591027029	1 probable transmembrane helix predicted for BCAM1960 by TMHMM2.0 at aa 20-42
216591027030	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 4.3e-09
216591027031	Plastocyanin [Energy production and conversion]; Region: PetE; COG3794
216591027032	Cupredoxin-like domain; Region: Cupredoxin_1; cl17234
216591027033	1 probable transmembrane helix predicted for BCAM1961 by TMHMM2.0 at aa 9-31
216591027034	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027035	HMMPfam hit to PF00127, Copper binding proteins, plastocyanin/azu, score 5.7e-09
216591027036	Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]; Region: COG3837
216591027037	HMMPfam hit to PF05899, Protein of unknown function (DUF861), score 0.0017
216591027038	HMMPfam hit to PF07883, Cupin domain, score 5.1e-25
216591027039	PS00120 Lipases, serine active site.
216591027040	Predicted phosphatases [General function prediction only]; Region: Gph; COG0546
216591027041	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591027042	motif II; other site
216591027043	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 2.7e-32
216591027044	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591027045	dimerization interface [polypeptide binding]; other site
216591027046	putative DNA binding site [nucleotide binding]; other site
216591027047	putative Zn2+ binding site [ion binding]; other site
216591027048	HMMPfam hit to PF01022, Bacterial regulatory protein, arsR family, score 0.0004
216591027049	Predicted helix-turn-helix motif with score 1452.000, SD 4.13 at aa 62-83, sequence VCAGQIDARCGLSQSTVSAHLA
216591027050	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591027051	Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933
216591027052	FMN binding site [chemical binding]; other site
216591027053	active site
216591027054	substrate binding site [chemical binding]; other site
216591027055	catalytic residue [active]
216591027056	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 2.8e-93
216591027057	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591027058	Coenzyme A binding pocket [chemical binding]; other site
216591027059	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.9e-13
216591027060	Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins; Region: PI-PLCc_BcPLC_like; cd08586
216591027061	active site
216591027062	catalytic site [active]
216591027063	putative metal binding site [ion binding]; other site
216591027064	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591027065	HMMPfam hit to PF00388, Phosphatidylinositol-specific phospholipase, score 5.2e-07
216591027066	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591027067	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591027068	DNA binding site [nucleotide binding]
216591027069	domain linker motif; other site
216591027070	Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_LacI_like_2; cd06278
216591027071	putative dimerization interface [polypeptide binding]; other site
216591027072	putative ligand binding site [chemical binding]; other site
216591027073	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 3.9e-07
216591027074	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
216591027075	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591027076	dimer interface [polypeptide binding]; other site
216591027077	conserved gate region; other site
216591027078	putative PBP binding loops; other site
216591027079	ABC-ATPase subunit interface; other site
216591027080	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3e-15
216591027081	7 probable transmembrane helices predicted for BCAM1971 by TMHMM2.0 at aa 20-42, 79-101, 114-136, 146-168, 190-212, 217-239 and 251-273
216591027082	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591027083	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
216591027084	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591027085	dimer interface [polypeptide binding]; other site
216591027086	conserved gate region; other site
216591027087	putative PBP binding loops; other site
216591027088	ABC-ATPase subunit interface; other site
216591027089	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.1e-15
216591027090	4 probable transmembrane helices predicted for BCAM1972 by TMHMM2.0 at aa 7-29, 72-94, 101-123 and 259-281
216591027091	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591027092	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
216591027093	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
216591027094	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 2.6e-27
216591027095	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591027096	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591027097	trimer interface [polypeptide binding]; other site
216591027098	eyelet of channel; other site
216591027099	HMMPfam hit to PF00267, Gram-negative porin, score 6.8e-05
216591027100	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591027101	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591027102	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00013
216591027103	PS00041 Bacterial regulatory proteins, araC family signature.
216591027104	Protein of unknown function (DUF3156); Region: DUF3156; pfam11354
216591027105	Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531
216591027106	HMMPfam hit to PF00324, Amino acid permease, score 9.6e-06
216591027107	13 probable transmembrane helices predicted for BCAM1977 by TMHMM2.0 at aa 4-26, 33-52, 62-84, 91-113, 128-150, 155-177, 192-214, 227-249, 286-308, 336-353, 363-385, 397-419 and 429-451
216591027108	hypothetical protein; Provisional; Region: PRK07481
216591027109	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591027110	inhibitor-cofactor binding pocket; inhibition site
216591027111	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591027112	catalytic residue [active]
216591027113	HMMPfam hit to PF00202, Aminotransferase class-III, score 3.7e-122
216591027114	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591027115	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
216591027116	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591027117	NAD(P) binding site [chemical binding]; other site
216591027118	catalytic residues [active]
216591027119	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 8.2e-231
216591027120	PS00070 Aldehyde dehydrogenases cysteine active site.
216591027121	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591027122	Predicted helix-turn-helix motif with score 1094.000, SD 2.91 at aa 208-229, sequence LRLAELAREAGVPPGVFNVVTG
216591027123	2 probable transmembrane helices predicted for BCAM1980 by TMHMM2.0 at aa 5-27 and 34-53
216591027124	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591027125	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591027126	DNA binding residues [nucleotide binding]
216591027127	dimerization interface [polypeptide binding]; other site
216591027128	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 9.6e-15
216591027129	PS00622 Bacterial regulatory proteins, luxR family signature.
216591027130	Predicted helix-turn-helix motif with score 1000.000, SD 2.59 at aa 203-224, sequence CSNKEIARDLALGQPTIKTHLM
216591027131	PS00211 ABC transporters family signature.
216591027132	Predicted metalloprotease [General function prediction only]; Region: COG2321
216591027133	Putative neutral zinc metallopeptidase; Region: Zn_peptidase; pfam04228
216591027134	HMMPfam hit to PF04228, Putative neutral zinc metallopeptidase, score 2.2e-152
216591027135	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591027136	1 probable transmembrane helix predicted for BCAM1982 by TMHMM2.0 at aa 21-43
216591027137	classical (c) SDRs; Region: SDR_c; cd05233
216591027138	NAD(P) binding site [chemical binding]; other site
216591027139	active site
216591027140	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.2e-19
216591027141	PS00061 Short-chain dehydrogenases/reductases family signature.
216591027142	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591027143	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591027144	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591027145	dimerization interface [polypeptide binding]; other site
216591027146	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.3e-19
216591027147	Predicted helix-turn-helix motif with score 1183.000, SD 3.22 at aa 41-62, sequence ENFRLTAEKLHTTQAAVSSRIA
216591027148	PS00044 Bacterial regulatory proteins, lysR family signature.
216591027149	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.9e-38
216591027150	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591027151	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591027152	putative substrate translocation pore; other site
216591027153	HMMPfam hit to PF00083, Sugar (and other) transporter score 5.8e-09
216591027154	12 probable transmembrane helices predicted for BCAM1986 by TMHMM2.0 at aa 20-42, 57-79, 92-111, 126-148, 161-183, 193-212, 259-278, 282-304, 313-335, 340-362, 375-397 and 402-424
216591027155	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.9e-21
216591027156	PS00217 Sugar transport proteins signature 2.
216591027157	Protein of unknown function (DUF2848); Region: DUF2848; pfam11010
216591027158	1 probable transmembrane helix predicted for BCAM1988 by TMHMM2.0 at aa 10-29
216591027159	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027160	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591027161	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591027162	NAD(P) binding site [chemical binding]; other site
216591027163	active site
216591027164	HMMPfam hit to PF05368, NmrA-like family, score 0.0055
216591027165	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 3.1e-07
216591027166	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591027167	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591027168	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591027169	dimerization interface [polypeptide binding]; other site
216591027170	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.5e-19
216591027171	Predicted helix-turn-helix motif with score 1568.000, SD 4.53 at aa 20-41, sequence GSLSGAARALGITQPTAGRHVA
216591027172	PS00044 Bacterial regulatory proteins, lysR family signature.
216591027173	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.1e-38
216591027174	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591027175	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591027176	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591027177	dimerization interface [polypeptide binding]; other site
216591027178	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.3e-14
216591027179	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.1e-21
216591027180	PS00044 Bacterial regulatory proteins, lysR family signature.
216591027181	Predicted helix-turn-helix motif with score 1767.000, SD 5.21 at aa 19-40, sequence GSLTAAAPLLHLSQSTVSEQVR
216591027182	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591027183	putative substrate translocation pore; other site
216591027184	13 probable transmembrane helices predicted for BCAM1993 by TMHMM2.0 at aa 27-49, 96-118, 122-144, 151-173, 183-205, 218-237, 242-264, 285-307, 317-339, 352-371, 381-403, 416-438 and 453-475
216591027185	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.1e-50
216591027186	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
216591027187	homotrimer interaction site [polypeptide binding]; other site
216591027188	putative active site [active]
216591027189	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 8.1e-25
216591027190	inner membrane protein; Provisional; Region: PRK11715
216591027191	HMMPfam hit to PF06123, Inner membrane protein CreD, score 9.3e-159
216591027192	6 probable transmembrane helices predicted for BCAM1996 by TMHMM2.0 at aa 5-27, 312-329, 336-358, 363-385, 392-411 and 416-435
216591027193	sensory histidine kinase CreC; Provisional; Region: PRK11100
216591027194	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591027195	dimerization interface [polypeptide binding]; other site
216591027196	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591027197	dimer interface [polypeptide binding]; other site
216591027198	phosphorylation site [posttranslational modification]
216591027199	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591027200	ATP binding site [chemical binding]; other site
216591027201	Mg2+ binding site [ion binding]; other site
216591027202	G-X-G motif; other site
216591027203	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 9e-32
216591027204	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.2e-14
216591027205	HMMPfam hit to PF00672, HAMP domain, score 9.3e-10
216591027206	2 probable transmembrane helices predicted for BCAM1997 by TMHMM2.0 at aa 5-27 and 186-208
216591027207	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027208	DNA-binding response regulator CreB; Provisional; Region: PRK11083
216591027209	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591027210	active site
216591027211	phosphorylation site [posttranslational modification]
216591027212	intermolecular recognition site; other site
216591027213	dimerization interface [polypeptide binding]; other site
216591027214	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591027215	DNA binding site [nucleotide binding]
216591027216	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.1e-26
216591027217	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.8e-37
216591027218	short chain dehydrogenase; Provisional; Region: PRK12828
216591027219	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591027220	NAD(P) binding site [chemical binding]; other site
216591027221	active site
216591027222	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.6e-24
216591027223	PS00061 Short-chain dehydrogenases/reductases family signature.
216591027224	1 probable transmembrane helix predicted for BCAM1999 by TMHMM2.0 at aa 7-29
216591027225	dihydrodipicolinate reductase; Region: dapB_plant; TIGR02130
216591027226	3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed; Region: PRK12826
216591027227	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591027228	NAD(P) binding site [chemical binding]; other site
216591027229	active site
216591027230	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.001
216591027231	HMMPfam hit to PF00106, short chain dehydrogenase, score 7e-29
216591027232	PS00061 Short-chain dehydrogenases/reductases family signature.
216591027233	Molybdenum cofactor biosynthesis protein F; Region: MoaF; pfam10703
216591027234	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591027235	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591027236	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 1.3e-22
216591027237	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 0.00042
216591027238	Predicted helix-turn-helix motif with score 1464.000, SD 4.17 at aa 180-201, sequence VSLAELADLSGVSRFQLLRGFA
216591027239	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 4.3e-08
216591027240	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
216591027241	EamA-like transporter family; Region: EamA; pfam00892
216591027242	EamA-like transporter family; Region: EamA; pfam00892
216591027243	10 probable transmembrane helices predicted for BCAM2004 by TMHMM2.0 at aa 7-29, 33-55, 68-90, 100-117, 126-148, 153-173, 180-202, 212-234, 247-266 and 270-289
216591027244	HMMPfam hit to PF08449, UAA transporter family, score 0.00043
216591027245	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.3e-15
216591027246	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.2e-19
216591027247	3 probable transmembrane helices predicted for BCAM2005 by TMHMM2.0 at aa 59-81, 85-107 and 137-156
216591027248	Predicted small secreted protein [Function unknown]; Region: COG5510
216591027249	HMMPfam hit to PF08085, Entericidin EcnA/B family, score 2.1e-17
216591027250	1 probable transmembrane helix predicted for BCAM2005A by TMHMM2.0 at aa 4-26
216591027251	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027252	aspartate carbamoyltransferase; Provisional; Region: PRK11891
216591027253	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
216591027254	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
216591027255	Predicted helix-turn-helix motif with score 1325.000, SD 3.70 at aa 18-39, sequence MTREAFANRIGVSRRALDTWLL
216591027256	HMMPfam hit to PF02729, Aspartate/ornithine carbamoyltransferase, ca, score 3.1e-46
216591027257	PS00097 Aspartate and ornithine carbamoyltransferases signature.
216591027258	HMMPfam hit to PF00185, Aspartate/ornithine carbamoyltransferase, As, score 1.3e-35
216591027259	This CDS appears to have a frameshift mutation. The CDS does not an appropriate translational stop
216591027260	HMMPfam hit to PF01850, PIN domain, score 2e-18
216591027261	This CDS appears to have a frameshift mutation.
216591027262	Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; Region: Fiu; COG4774
216591027263	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591027264	N-terminal plug; other site
216591027265	ligand-binding site [chemical binding]; other site
216591027266	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 1.3e-17
216591027267	HMMPfam hit to PF00593, TonB dependent receptor, score 6.6e-32
216591027268	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591027269	Sel1-like repeats; Region: SEL1; smart00671
216591027270	Sel1-like repeats; Region: SEL1; smart00671
216591027271	HMMPfam hit to PF08238, Sel1 repeat, score 6.8e-08
216591027272	HMMPfam hit to PF08238, Sel1 repeat, score 2e-06
216591027273	HMMPfam hit to PF08238, Sel1 repeat, score 2.7e-05
216591027274	HMMPfam hit to PF08238, Sel1 repeat, score 0.006
216591027275	Fe(II)-dependent oxygenase superfamily protein; Provisional; Region: PRK05467
216591027276	HMMPfam hit to PF03171, 2OG-Fe(II) oxygenase superfamily, score 5.3e-10
216591027277	Antitoxin Phd_YefM, type II toxin-antitoxin system; Region: PhdYeFM_antitox; pfam02604
216591027278	GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function; Region: GT_2_like_f; cd04182
216591027279	metal-binding site
216591027280	short chain dehydrogenase; Provisional; Region: PRK07060
216591027281	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591027282	NAD(P) binding site [chemical binding]; other site
216591027283	active site
216591027284	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0027
216591027285	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.3e-18
216591027286	PS00061 Short-chain dehydrogenases/reductases family signature.
216591027287	Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]; Region: XylB; COG1070
216591027288	uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases; Region: FGGY_XK_like_1; cd07804
216591027289	N- and C-terminal domain interface [polypeptide binding]; other site
216591027290	putative active site [active]
216591027291	MgATP binding site [chemical binding]; other site
216591027292	catalytic site [active]
216591027293	metal binding site [ion binding]; metal-binding site
216591027294	putative xylulose binding site [chemical binding]; other site
216591027295	putative homodimer interface [polypeptide binding]; other site
216591027296	HMMPfam hit to PF02782, FGGY family of carbohydrate kinases, C-termi, score 4.8e-43
216591027297	PS00445 FGGY family of carbohydrate kinases signature 2.
216591027298	HMMPfam hit to PF00370, FGGY family of carbohydrate kinases, N-termi, score 3e-61
216591027299	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
216591027300	Alcohol dehydrogenases of the MDR family; Region: Zn_ADH2; cd08256
216591027301	putative NAD(P) binding site [chemical binding]; other site
216591027302	catalytic Zn binding site [ion binding]; other site
216591027303	structural Zn binding site [ion binding]; other site
216591027304	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 1.1e-30
216591027305	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.6e-41
216591027306	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591027307	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591027308	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591027309	TM-ABC transporter signature motif; other site
216591027310	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.7e-67
216591027311	7 probable transmembrane helices predicted for BCAM2016 by TMHMM2.0 at aa 10-32, 44-63, 78-100, 107-129, 156-177, 208-230 and 257-279
216591027312	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
216591027313	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591027314	Walker A/P-loop; other site
216591027315	ATP binding site [chemical binding]; other site
216591027316	Q-loop/lid; other site
216591027317	ABC transporter signature motif; other site
216591027318	Walker B; other site
216591027319	D-loop; other site
216591027320	H-loop/switch region; other site
216591027321	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591027322	HMMPfam hit to PF00005, ABC transporter score 1.9e-17
216591027323	PS00211 ABC transporters family signature.
216591027324	HMMPfam hit to PF00005, ABC transporter score 1.9e-58
216591027325	PS00017 ATP/GTP-binding site motif A (P-loop).
216591027326	Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Region: PBP1_ABC_sugar_binding_like_11; cd06321
216591027327	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591027328	putative ligand binding site [chemical binding]; other site
216591027329	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 1.6e-05
216591027330	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591027331	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591027332	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591027333	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.6e-09
216591027334	PS00041 Bacterial regulatory proteins, araC family signature.
216591027335	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.4e-05
216591027336	Predicted helix-turn-helix motif with score 1469.000, SD 4.19 at aa 197-218, sequence LRESDLAQLTGQSVSAFSRAFH
216591027337	2-dehydropantoate 2-reductase; Provisional; Region: PRK12921
216591027338	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
216591027339	Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546
216591027340	HMMPfam hit to PF08546, Ketopantoate reductase PanE/ApbA C terminal, score 1.8e-23
216591027341	HMMPfam hit to PF02558, Ketopantoate reductase PanE/ApbA, score 1.3e-51
216591027342	Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins; Region: Cache_2; smart01049
216591027343	Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840
216591027344	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591027345	dimer interface [polypeptide binding]; other site
216591027346	putative CheW interface [polypeptide binding]; other site
216591027347	2 probable transmembrane helices predicted for BCAM2021 by TMHMM2.0 at aa 10-32 and 187-209
216591027348	HMMPfam hit to PF08269, Cache domain, score 4.3e-38
216591027349	HMMPfam hit to PF00672, HAMP domain, score 9.9e-05
216591027350	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 6.3e-98
216591027351	transcriptional regulator RcsB; Provisional; Region: PRK10840
216591027352	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591027353	DNA binding residues [nucleotide binding]
216591027354	dimerization interface [polypeptide binding]; other site
216591027355	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 7.4e-12
216591027356	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.5e-05
216591027357	1 probable transmembrane helix predicted for BCAM2024 by TMHMM2.0 at aa 103-125
216591027358	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
216591027359	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591027360	Walker A motif; other site
216591027361	ATP binding site [chemical binding]; other site
216591027362	Walker B motif; other site
216591027363	arginine finger; other site
216591027364	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
216591027365	DNA-binding interface [nucleotide binding]; DNA binding site
216591027366	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 1.1e-06
216591027367	Predicted helix-turn-helix motif with score 1458.000, SD 4.15 at aa 446-467, sequence HQHADVAAELGISRATLYRLMI
216591027368	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591027369	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 1.3e-136
216591027370	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591027371	PS00017 ATP/GTP-binding site motif A (P-loop).
216591027372	1 probable transmembrane helix predicted for BCAM2031 by TMHMM2.0 at aa 4-26
216591027373	UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs; Region: UGD_SDR_e; cd05230
216591027374	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591027375	NAD binding site [chemical binding]; other site
216591027376	putative substrate binding site 2 [chemical binding]; other site
216591027377	putative substrate binding site 1 [chemical binding]; other site
216591027378	active site
216591027379	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.7e-52
216591027380	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 0.0003
216591027381	HMMPfam hit to PF07993, Male sterility protein, score 2.8e-06
216591027382	UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]; Region: GalE; COG1087
216591027383	UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247
216591027384	NAD binding site [chemical binding]; other site
216591027385	homodimer interface [polypeptide binding]; other site
216591027386	active site
216591027387	substrate binding site [chemical binding]; other site
216591027388	HMMPfam hit to PF04321, RmlD substrate binding domain, score 6.2e-06
216591027389	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase f, score 3.7e-69
216591027390	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 0.0003
216591027391	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.6e-05
216591027392	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/i, score 5.8e-09
216591027393	HMMPfam hit to PF07993, Male sterility protein, score 6.8e-05
216591027394	Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: Ugd; COG1004
216591027395	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
216591027396	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
216591027397	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; pfam03720
216591027398	HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 5e-86
216591027399	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 0.00085
216591027400	HMMPfam hit to PF00984, UDP-glucose/GDP-mannose dehydrogenase, score 1.6e-48
216591027401	HMMPfam hit to PF03720, UDP-glucose/GDP-mannose dehydrogenase, score 5.3e-31
216591027402	Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: COG1215
216591027403	CESA_CelA_like are involved in the elongation of the glucan chain of cellulose; Region: CESA_CelA_like; cd06421
216591027404	DXD motif; other site
216591027405	Beta-mannanase [Carbohydrate transport and metabolism]; Region: ManB; COG4124
216591027406	8 probable transmembrane helices predicted for BCAM2035 by TMHMM2.0 at aa 49-71, 84-103, 381-403, 415-437, 457-476, 496-518, 528-547 and 568-590
216591027407	AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719
216591027408	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591027409	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591027410	PS00041 Bacterial regulatory proteins, araC family signature.
216591027411	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.6e-09
216591027412	Predicted helix-turn-helix motif with score 1710.000, SD 5.01 at aa 215-236, sequence MRVESLAQAVNMSVSSLHHHFK
216591027413	HMMPfam hit to PF06719, AraC-type transcriptional regulator N-termin, score 1.3e-57
216591027414	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080
216591027415	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591027416	catalytic loop [active]
216591027417	iron binding site [ion binding]; other site
216591027418	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591027419	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 4.6e-10
216591027420	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591027421	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 4.1e-36
216591027422	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591027423	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591027424	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591027425	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591027426	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 2.7e-09
216591027427	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591027428	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591027429	DNA binding site [nucleotide binding]
216591027430	HMMPfam hit to PF00486, Transcriptional regulatory protein, C ter, score 1.3e-16
216591027431	Surface presentation of antigens (SPOA); Region: SpoA; cl00819
216591027432	Surface presentation of antigens (SPOA); Region: SpoA; pfam01052
216591027433	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) prot, score 0.012
216591027434	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) prot, score 1.1e-11
216591027435	type III secretion system protein YscR; Provisional; Region: PRK12797
216591027436	4 probable transmembrane helices predicted for BCAM2041 by TMHMM2.0 at aa 7-29, 49-71, 161-183 and 198-220
216591027437	HMMPfam hit to PF00813, FliP family, score 1.4e-106
216591027438	PS00043 Bacterial regulatory proteins, gntR family signature.
216591027439	PS01061 Flagella transport protein fliP family signature 2.
216591027440	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591027441	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591027442	catalytic residue [active]
216591027443	1 probable transmembrane helix predicted for BCAM2042 by TMHMM2.0 at aa 9-31
216591027444	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027445	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 1.8e-15
216591027446	CDS contains a frameshift around codon 3666. Similar to Burkholderia multivorans hypothetical protein UniProt:Q6H253 (EMBL:AY380558 (3953 aa) fasta scores: E()=0, 56.957% id in 3989 aa
216591027447	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591027448	exosortase A system-associated amidotransferase 1; Region: eps_aminotran_1; TIGR03108
216591027449	Glutamine amidotransferases class-II (GATase) asparagine synthase_B type.  Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a  glutaminase domain and a...; Region: AsnB; cd00712
216591027450	active site
216591027451	dimer interface [polypeptide binding]; other site
216591027452	The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the...; Region: Asn_Synthase_B_C; cd01991
216591027453	Ligand Binding Site [chemical binding]; other site
216591027454	Molecular Tunnel; other site
216591027455	The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the...; Region: Asn_Synthase_B_C; cd01991
216591027456	HMMPfam hit to PF00733, Asparagine synthase, score 1e-126
216591027457	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 1.2e-09
216591027458	flagellar biosynthesis protein FlhB; Reviewed; Region: flhB; PRK05702
216591027459	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257; cl15822
216591027460	HMMPfam hit to PF01312, FlhB HrpN YscU SpaS Family, score 1.3e-64
216591027461	4 probable transmembrane helices predicted for BCAM2045 by TMHMM2.0 at aa 33-55, 90-112, 137-159 and 174-196
216591027462	Bacterial export proteins, family 1; Region: Bac_export_1; cl00734
216591027463	HMMPfam hit to PF01311, Bacterial export proteins, family, score 5.1e-55
216591027464	6 probable transmembrane helices predicted for BCAM2046 by TMHMM2.0 at aa 12-34, 49-71, 83-105, 128-150, 191-213 and 228-250
216591027465	Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliI; COG1157
216591027466	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
216591027467	Walker A motif/ATP binding site; other site
216591027468	Walker B motif; other site
216591027469	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 5.2e-122
216591027470	PS00152 ATP synthase alpha and beta subunits signature.
216591027471	PS00017 ATP/GTP-binding site motif A (P-loop).
216591027472	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 1e-05
216591027473	type III secretion system protein; Reviewed; Region: PRK06937
216591027474	Flagellar assembly protein FliH; Region: FliH; pfam02108
216591027475	YOP proteins translocation protein K (YscK); Region: YscK; pfam06578
216591027476	type III secretion apparatus lipoprotein, YscJ/HrcJ family; Region: III_secr_YscJ; TIGR02544
216591027477	1 probable transmembrane helix predicted for BCAM2051 by TMHMM2.0 at aa 229-251
216591027478	HMMPfam hit to PF01514, Secretory protein of YscJ/FliF family, score 2e-71
216591027479	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027480	type III secretion apparatus protein, YscD/HrpQ family; Region: type_III_yscD; TIGR02500
216591027481	FHA domain; Region: FHA; pfam00498
216591027482	Type IV pilus biogenesis; Region: Pilus_PilP; pfam11356
216591027483	2 probable transmembrane helices predicted for BCAM2054 by TMHMM2.0 at aa 15-37 and 167-189
216591027484	HMMPfam hit to PF00498, FHA domain, score 1.2e-10
216591027485	type III secretion outer membrane pore, YscC/HrcC family; Region: type_III_yscC; TIGR02516
216591027486	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
216591027487	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
216591027488	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
216591027489	HMMPfam hit to PF00263, Bacterial type II and III secretion system, score 1e-53
216591027490	PS00875 Bacterial type II secretion system protein D signature.
216591027491	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 2.1e-10
216591027492	HMMPfam hit to PF03958, Bacterial type II/III secretion system sho, score 2.5e-09
216591027493	1 probable transmembrane helix predicted for BCAM2055 by TMHMM2.0 at aa 19-41
216591027494	Bacterial export proteins, family 3; Region: Bac_export_3; cl00867
216591027495	HMMPfam hit to PF01313, Bacterial export proteins, family, score 4e-23
216591027496	2 probable transmembrane helices predicted for BCAM2056 by TMHMM2.0 at aa 15-37 and 49-71
216591027497	Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlhA; cl07980
216591027498	FHIPEP family; Region: FHIPEP; pfam00771
216591027499	HMMPfam hit to PF00771, FHIPEP family, score 3.1e-251
216591027500	7 probable transmembrane helices predicted for BCAM2057 by TMHMM2.0 at aa 35-57, 62-84, 89-111, 126-148, 218-240, 260-282 and 303-325
216591027501	PS00994 Bacterial export FHIPEP family signature.
216591027502	Autoinducer binding domain; Region: Autoind_bind; pfam03472
216591027503	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cl17315
216591027504	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 0.00052
216591027505	Autoinducer binding domain; Region: Autoind_bind; pfam03472
216591027506	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591027507	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591027508	DNA binding residues [nucleotide binding]
216591027509	dimerization interface [polypeptide binding]; other site
216591027510	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 5.5e-08
216591027511	Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]; Region: MntH; COG1914
216591027512	Natural resistance-associated macrophage protein; Region: Nramp; pfam01566
216591027513	13 probable transmembrane helices predicted for BCAM2060 by TMHMM2.0 at aa 46-65, 80-99, 126-148, 153-175, 188-210, 230-249, 271-293, 324-346, 367-389, 394-416, 429-451, 461-483 and 525-547
216591027514	HMMPfam hit to PF01566, Natural resistance-associated macrophage pro, score 2.4e-06
216591027515	Carbohydrate-selective porin, OprB family; Region: OprB; pfam04966
216591027516	HMMPfam hit to PF04966, Carbohydrate-selective porin, OprB family, score 8.7e-136
216591027517	PS00678 Trp-Asp (WD) repeats signature.
216591027518	Trehalase; Region: Trehalase; cl17346
216591027519	Neutral trehalase [Carbohydrate transport and metabolism]; Region: TreA; COG1626
216591027520	HMMPfam hit to PF01204, Trehalase, score 1.6e-241
216591027521	PS00928 Trehalase signature 2.
216591027522	PS00927 Trehalase signature 1.
216591027523	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027524	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591027525	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591027526	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 1.5e-13
216591027527	Predicted helix-turn-helix motif with score 1382.000, SD 3.89 at aa 44-65, sequence YTTNAVAALAGVSIGSLYQYFP
216591027528	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591027529	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591027530	putative substrate translocation pore; other site
216591027531	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027532	14 probable transmembrane helices predicted for BCAM2066 by TMHMM2.0 at aa 13-35, 55-74, 81-103, 107-129, 142-164, 168-187, 200-222, 232-251, 272-294, 299-318, 330-352, 356-378, 399-421 and 436-453
216591027533	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-49
216591027534	Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cl00230
216591027535	Putative undecaprenyl diphosphate synthase; Region: Prenyltransf; pfam01255
216591027536	catalytic residue [active]
216591027537	putative FPP diphosphate  binding site; other site
216591027538	putative FPP binding hydrophobic cleft; other site
216591027539	dimer interface [polypeptide binding]; other site
216591027540	putative IPP diphosphate binding site; other site
216591027541	HMMPfam hit to PF01255, Putative undecaprenyl diphosphate synthase, score 1.6e-75
216591027542	PS01066 Undecaprenyl pyrophosphate synthetase family signature.
216591027543	Isoprenoid Biosynthesis enzymes, Class 1; Region: Isoprenoid_Biosyn_C1; cl00210
216591027544	substrate binding pocket [chemical binding]; other site
216591027545	substrate-Mg2+ binding site; other site
216591027546	aspartate-rich region 1; other site
216591027547	aspartate-rich region 2; other site
216591027548	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3214
216591027549	Protein of unknown function (DUF1006); Region: DUF1006; pfam06224
216591027550	HMMPfam hit to PF06224, Protein of unknown function (DUF1006), score 1.7e-160
216591027551	Protein of unknown function (DUF1653); Region: DUF1653; pfam07866
216591027552	HMMPfam hit to PF07866, Protein of unknown function (DUF1653), score 3.4e-14
216591027553	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
216591027554	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591027555	Coenzyme A binding pocket [chemical binding]; other site
216591027556	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.3e-12
216591027557	Predicted phosphatases [General function prediction only]; Region: Gph; COG0546
216591027558	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 2.3e-22
216591027559	Domain of unknown function (DUF4142); Region: DUF4142; pfam13628
216591027560	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
216591027561	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591027562	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.1e-06
216591027563	DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013
216591027564	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591027565	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591027566	dimerization interface [polypeptide binding]; other site
216591027567	HMMPfam hit to PF03466, LysR substrate binding domain, score 1e-38
216591027568	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.5e-19
216591027569	PS00044 Bacterial regulatory proteins, lysR family signature.
216591027570	Predicted helix-turn-helix motif with score 1680.000, SD 4.91 at aa 17-38, sequence GSTTRAAEMLYTSQPTISRELA
216591027571	diaminopimelate decarboxylase; Provisional; Region: PRK11165
216591027572	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase; Region: PLPDE_III_DapDC; cd06828
216591027573	active site
216591027574	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
216591027575	substrate binding site [chemical binding]; other site
216591027576	catalytic residues [active]
216591027577	dimer interface [polypeptide binding]; other site
216591027578	HMMPfam hit to PF02784, Pyridoxal-dependent decarboxylase, py, score 3.3e-68
216591027579	PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
216591027580	PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.
216591027581	HMMPfam hit to PF00278, Pyridoxal-dependent decarboxylase, C-, score 2.4e-30
216591027582	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
216591027583	EamA-like transporter family; Region: EamA; pfam00892
216591027584	10 probable transmembrane helices predicted for BCAM2077 by TMHMM2.0 at aa 7-29, 34-56, 68-87, 91-113, 120-139, 144-166, 179-198, 208-230, 237-259 and 264-286
216591027585	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2.3e-11
216591027586	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027587	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 5.8e-15
216591027588	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591027589	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591027590	DNA-binding site [nucleotide binding]; DNA binding site
216591027591	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591027592	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591027593	homodimer interface [polypeptide binding]; other site
216591027594	catalytic residue [active]
216591027595	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 3e-17
216591027596	Predicted helix-turn-helix motif with score 1127.000, SD 3.03 at aa 44-65, sequence PSIRMMADALGVSKSTVVDAYE
216591027597	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.9e-17
216591027598	putative nicotinate phosphoribosyltransferase; Provisional; Region: PRK09198
216591027599	pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general; Region: PBEF_like; cd01569
216591027600	active site
216591027601	HMMPfam hit to PF04095, Nicotinate phosphoribosyltransferase (NAPRTa, score 4.8e-101
216591027602	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional; Region: PRK05379
216591027603	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
216591027604	active site
216591027605	nucleotide binding site [chemical binding]; other site
216591027606	HIGH motif; other site
216591027607	KMSKS motif; other site
216591027608	ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]; Region: COG1051
216591027609	nudix motif; other site
216591027610	HMMPfam hit to PF00293, NUDIX domain, score 3.1e-30
216591027611	PS00893 mutT domain signature.
216591027612	HMMPfam hit to PF01467, Cytidylyltransferase, score 5.3e-11
216591027613	START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643
216591027614	hydrophobic ligand binding site; other site
216591027615	S-adenosylmethionine decarboxylase; Region: AdoMet_dc; cl00687
216591027616	HMMPfam hit to PF02675, S-adenosylmethionine decarboxylase, score 3.1e-41
216591027617	Domain of unknown function (DUF4178); Region: DUF4178; pfam13785
216591027618	Domain of unknown function (DUF4178); Region: DUF4178; pfam13785
216591027619	2 probable transmembrane helices predicted for BCAM2083 by TMHMM2.0 at aa 451-473 and 478-495
216591027620	PS00190 Cytochrome c family heme-binding site signature.
216591027621	A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin.  Many of these band 7 domain-containing proteins are lipid raft-associated.  Individual...; Region: Band_7_5; cd03408
216591027622	Short C-terminal domain; Region: SHOCT; pfam09851
216591027623	Domain of Unknown Function (DUF350); Region: DUF350; pfam03994
216591027624	Domain of Unknown Function (DUF350); Region: DUF350; pfam03994
216591027625	HMMPfam hit to PF03994, Domain of Unknown Function (DUF350), score 4e-08
216591027626	4 probable transmembrane helices predicted for BCAM2085 by TMHMM2.0 at aa 7-26, 41-63, 68-90 and 105-127
216591027627	HMMPfam hit to PF03994, Domain of Unknown Function (DUF350), score 8.4e-08
216591027628	spermidine synthase; Provisional; Region: PRK03612
216591027629	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591027630	7 probable transmembrane helices predicted for BCAM2086 by TMHMM2.0 at aa 7-26, 36-58, 75-97, 101-123, 136-158, 163-185 and 197-214
216591027631	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027632	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027633	HMMPfam hit to PF01564, Spermine/spermidine synthase, score 4.7e-49
216591027634	PS01330 Spermidine/spermine synthases family signature.
216591027635	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591027636	Flavin containing amine oxidoreductase; Region: Amino_oxidase; pfam01593
216591027637	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027638	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.0014
216591027639	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027640	N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: AmiC; COG0860
216591027641	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
216591027642	active site
216591027643	metal binding site [ion binding]; metal-binding site
216591027644	HMMPfam hit to PF01520, N-acetylmuramoyl-L-alanine amidase, score 2.5e-13
216591027645	Protein of unknown function (DUF1311); Region: DUF1311; pfam07007
216591027646	1 probable transmembrane helix predicted for BCAM2089 by TMHMM2.0 at aa 30-49
216591027647	HMMPfam hit to PF07007, Protein of unknown function (DUF1311), score 1.3e-06
216591027648	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591027649	Coenzyme A binding pocket [chemical binding]; other site
216591027650	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.9e-16
216591027651	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591027652	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591027653	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591027654	dimerization interface [polypeptide binding]; other site
216591027655	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.5e-36
216591027656	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.5e-19
216591027657	PS00044 Bacterial regulatory proteins, lysR family signature.
216591027658	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]; Region: UbiH; COG0654
216591027659	hypothetical protein; Provisional; Region: PRK07236
216591027660	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00015
216591027661	HMMPfam hit to PF01494, FAD binding domain, score 6.1e-08
216591027662	Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174
216591027663	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
216591027664	HMMPfam hit to PF00120, Glutamine synthetase, catalytic domain, score 1.1e-67
216591027665	PS00181 Glutamine synthetase putative ATP-binding region signature.
216591027666	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591027667	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591027668	non-specific DNA binding site [nucleotide binding]; other site
216591027669	salt bridge; other site
216591027670	sequence-specific DNA binding site [nucleotide binding]; other site
216591027671	Cupin domain; Region: Cupin_2; pfam07883
216591027672	HMMPfam hit to PF07883, Cupin domain, score 2.5e-16
216591027673	HMMPfam hit to PF01381, Helix-turn-helix, score 3.8e-12
216591027674	Predicted helix-turn-helix motif with score 1346.000, SD 3.77 at aa 23-44, sequence VTLNDLAERIGRSVGFLSQVER
216591027675	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591027676	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591027677	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.4e-89
216591027678	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591027679	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591027680	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591027681	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591027682	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591027683	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591027684	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 1.2e-08
216591027685	HMMPfam hit to PF01315, Aldehyde oxidase and xanthine dehydroge, score 0.0039
216591027686	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080
216591027687	Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport...; Region: FNR_like; cl06868
216591027688	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591027689	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 1.4e-31
216591027690	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 4.5e-07
216591027691	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591027692	Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Region: GATase1_Hsp31_like; cd03141
216591027693	Putative intracellular protease/amidase [General function prediction only]; Region: ThiJ; COG0693
216591027694	potential catalytic triad [active]
216591027695	conserved cys residue [active]
216591027696	HMMPfam hit to PF01965, DJ-1/PfpI family, score 2.7e-18
216591027697	Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600
216591027698	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
216591027699	DNA binding residues [nucleotide binding]
216591027700	HMMPfam hit to PF00376, MerR family regulatory protein, score 5.6e-12
216591027701	PS00552 Bacterial regulatory proteins, merR family signature.
216591027702	Predicted helix-turn-helix motif with score 1911.000, SD 5.70 at aa 1-22, sequence MKIGDLAERTGLTPSRIRFYER
216591027703	transposase/IS protein; Provisional; Region: PRK09183
216591027704	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591027705	Walker A motif; other site
216591027706	ATP binding site [chemical binding]; other site
216591027707	Walker B motif; other site
216591027708	HMMPfam hit to PF01695, IstB-like ATP binding protein, score 9.6e-88
216591027709	PS00017 ATP/GTP-binding site motif A (P-loop).
216591027710	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
216591027711	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
216591027712	DNA-binding interface [nucleotide binding]; DNA binding site
216591027713	Integrase core domain; Region: rve; pfam00665
216591027714	HMMPfam hit to PF00665, Integrase core domain, score 2.7e-25
216591027715	HMMPfam hit to PF02796, Helix-turn-helix domain of resolvase, score 0.0028
216591027716	Predicted helix-turn-helix motif with score 2020.000, SD 6.07 at aa 18-39, sequence VSEREIARRLGISRNTVARYLS
216591027717	Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600
216591027718	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
216591027719	DNA binding residues [nucleotide binding]
216591027720	Predicted helix-turn-helix motif with score 1462.000, SD 4.17 at aa 51-72, sequence LGLISIAQQAGFTLEQIRQLLP
216591027721	HMMPfam hit to PF00376, MerR family regulatory protein, score 2.8e-11
216591027722	PS00552 Bacterial regulatory proteins, merR family signature.
216591027723	Predicted helix-turn-helix motif with score 1462.000, SD 4.17 at aa 5-26, sequence VKIGELAKRSGLTASRIRFYEA
216591027724	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591027725	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591027726	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 2e-35
216591027727	catalase/hydroperoxidase HPI(I); Provisional; Region: PRK15061
216591027728	N-terminal catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_1; cd00649
216591027729	dimer interface [polypeptide binding]; other site
216591027730	active site
216591027731	heme binding site [chemical binding]; other site
216591027732	C-terminal non-catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_2; cd08200
216591027733	HMMPfam hit to PF00141, Peroxidase, score 9.4e-82
216591027734	PS00436 Peroxidases active site signature.
216591027735	PS00435 Peroxidases proximal heme-ligand signature.
216591027736	PS00017 ATP/GTP-binding site motif A (P-loop).
216591027737	HMMPfam hit to PF00141, Peroxidase, score 1.6e-119
216591027738	putative NAD(P)H quinone oxidoreductase, PIG3 family; Region: quinone_pig3; TIGR02824
216591027739	PIG3 p53-inducible quinone oxidoreductase; Region: p53_inducible_oxidoreductase; cd05276
216591027740	NAD(P) binding site [chemical binding]; other site
216591027741	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 4.1e-21
216591027742	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 1.2e-34
216591027743	PS00962 Ribosomal protein S2 signature 1.
216591027744	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591027745	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591027746	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
216591027747	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 2.9e-34
216591027748	Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Region: GATase1_Hsp31_like; cd03141
216591027749	Putative intracellular protease/amidase [General function prediction only]; Region: ThiJ; COG0693
216591027750	potential catalytic triad [active]
216591027751	conserved cys residue [active]
216591027752	HMMPfam hit to PF01965, DJ-1/PfpI family, score 2.9e-12
216591027753	1 probable transmembrane helix predicted for BCAM2110 by TMHMM2.0 at aa 5-27
216591027754	putative catalase (fragment);Similar to an internal region of Pseudomonas aeruginosa KatB catalase precursor (paraquat-inducible catalase isozyme b). UniProt:Q59635 (EMBL:AE004875) (513 aa) fasta scores: E()=3e-12, 49.000% id in 100 aa
216591027755	atypical (a) SDRs, subgroup 3; Region: SDR_a3; cd05229
216591027756	NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370
216591027757	putative NAD(P) binding site [chemical binding]; other site
216591027758	putative active site [active]
216591027759	HMMPfam hit to PF04321, RmlD substrate binding domain, score 0.00018
216591027760	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.2e-07
216591027761	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 0.00056
216591027762	putative peptidase/dipeptidase (fragment);Similar to C-terminus of Mycobacterium bovis probable dipeptidase PepE. UniProt:P65811 (EMBL:BX248341) (375 aa) fasta scores: E()=6.3e-06, 36.585% id in 82 aa, and to C-terminus of /NCIB 9086/R18194)) peptidase m24. UniProt:Q391R1 (EMBL:CP000152) (388 aa) fasta scores: E()=7.5e-24, 76.404% id in 89 aa
216591027763	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591027764	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591027765	putative substrate translocation pore; other site
216591027766	HMMPfam hit to PF00083, Sugar (and other) transporter score 3.4e-07
216591027767	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.7e-15
216591027768	12 probable transmembrane helices predicted for BCAM2113 by TMHMM2.0 at aa 88-107, 112-134, 147-169, 179-201, 213-235, 245-264, 303-325, 335-357, 364-383, 393-415, 428-450 and 455-477
216591027769	PS00217 Sugar transport proteins signature 2.
216591027770	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591027771	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591027772	active site
216591027773	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 0.002
216591027774	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 2.1e-21
216591027775	Flavin Reductases; Region: FlaRed; cl00801
216591027776	HMMPfam hit to PF01613, Flavin reductase like domain, score 8.6e-47
216591027777	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591027778	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591027779	The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_NahR_LinR_like; cd08459
216591027780	substrate binding pocket [chemical binding]; other site
216591027781	dimerization interface [polypeptide binding]; other site
216591027782	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.4e-20
216591027783	Predicted helix-turn-helix motif with score 1701.000, SD 4.98 at aa 36-57, sequence RSLTAAGDRLELTQPAVSHALR
216591027784	PS00044 Bacterial regulatory proteins, lysR family signature.
216591027785	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.7e-30
216591027786	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591027787	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591027788	The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_NahR_LinR_like; cd08459
216591027789	substrate binding pocket [chemical binding]; other site
216591027790	dimerization interface [polypeptide binding]; other site
216591027791	HMMPfam hit to PF03466, LysR substrate binding domain, score 2e-19
216591027792	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5e-21
216591027793	PS00044 Bacterial regulatory proteins, lysR family signature.
216591027794	Predicted helix-turn-helix motif with score 1264.000, SD 3.49 at aa 22-43, sequence HSLTRAGERLALSQPAVSYSLG
216591027795	Carboxylesterase family; Region: COesterase; pfam00135
216591027796	Esterases and lipases (includes fungal lipases, cholinesterases, etc.)  These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cd00312
216591027797	substrate binding pocket [chemical binding]; other site
216591027798	catalytic triad [active]
216591027799	HMMPfam hit to PF00135, Carboxylesterase, score 4.2e-126
216591027800	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027801	PS00941 Carboxylesterases type-B signature 2.
216591027802	PS00122 Carboxylesterases type-B serine active site.
216591027803	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
216591027804	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 1.2e-18
216591027805	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated; Region: PRK08195
216591027806	4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_HOA; cd07943
216591027807	active site
216591027808	catalytic residues [active]
216591027809	metal binding site [ion binding]; metal-binding site
216591027810	DmpG-like communication domain; Region: DmpG_comm; pfam07836
216591027811	HMMPfam hit to PF07836, DmpG-like communication domain, score 1.7e-42
216591027812	HMMPfam hit to PF00682, HMGL-like, score 4.9e-105
216591027813	acetaldehyde dehydrogenase; Validated; Region: PRK08300
216591027814	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
216591027815	Prokaryotic acetaldehyde dehydrogenase, dimerisation; Region: AcetDehyd-dimer; pfam09290
216591027816	HMMPfam hit to PF01118, Semialdehyde dehydrogenase, NAD bindin, score 1.4e-27
216591027817	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
216591027818	HMMPfam hit to PF01689, Hydratase/decarboxylase, score 1.3e-59
216591027819	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
216591027820	HMMPfam hit to PF01689, Hydratase/decarboxylase, score 2.7e-111
216591027821	Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the...; Region: IGPS; cd00331
216591027822	active site
216591027823	ribulose/triose binding site [chemical binding]; other site
216591027824	phosphate binding site [ion binding]; other site
216591027825	substrate (anthranilate) binding pocket [chemical binding]; other site
216591027826	product (indole) binding pocket [chemical binding]; other site
216591027827	HMMPfam hit to PF00218, Indole-3-glycerol phosphate synthase, score 3.2e-111
216591027828	PS00614 Indole-3-glycerol phosphate synthase signature.
216591027829	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591027830	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591027831	eyelet of channel; other site
216591027832	trimer interface [polypeptide binding]; other site
216591027833	HMMPfam hit to PF00267, Gram-negative porin, score 4.3e-06
216591027834	Dienelactone hydrolase family; Region: DLH; pfam01738
216591027835	Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109
216591027836	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 0.0043
216591027837	HMMPfam hit to PF01738, Dienelactone hydrolase family, score 4.6e-65
216591027838	short chain dehydrogenase; Validated; Region: PRK08264
216591027839	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591027840	NAD(P) binding site [chemical binding]; other site
216591027841	active site
216591027842	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0025
216591027843	HMMPfam hit to PF00106, short chain dehydrogenase, score 3e-13
216591027844	Amidohydrolase; Region: Amidohydro_2; pfam04909
216591027845	HMMPfam hit to PF04909, Amidohydrolase, score 5.6e-43
216591027846	3-hydroxyanthranilate 3,4-dioxygenase; Provisional; Region: PRK13264
216591027847	HMMPfam hit to PF06052, 3-hydroxyanthranilic acid dioxygenase, score 5.1e-48
216591027848	HMMPfam hit to PF07883, Cupin domain, score 0.00043
216591027849	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
216591027850	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
216591027851	homotrimer interaction site [polypeptide binding]; other site
216591027852	putative active site [active]
216591027853	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 5.5e-30
216591027854	2-hydroxymuconic semialdehyde dehydrogenase; Region: OH_muco_semi_DH; TIGR03216
216591027855	Human aldehyde dehydrogenase family 8 member A1-like; Region: ALDH_F8_HMSADH; cd07093
216591027856	NAD binding site [chemical binding]; other site
216591027857	catalytic residues [active]
216591027858	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.5e-218
216591027859	PS00070 Aldehyde dehydrogenases cysteine active site.
216591027860	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591027861	Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]; Region: COG1545
216591027862	Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172
216591027863	thiolase; Provisional; Region: PRK06158
216591027864	Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal...; Region: SCP-x_thiolase; cd00829
216591027865	active site
216591027866	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591027867	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591027868	putative substrate translocation pore; other site
216591027869	HMMPfam hit to PF00083, Sugar (and other) transporter score 3.9e-20
216591027870	12 probable transmembrane helices predicted for BCAM2135 by TMHMM2.0 at aa 20-42, 57-79, 92-114, 124-146, 158-180, 190-212, 253-275, 279-301, 310-329, 334-353, 374-396 and 401-423
216591027871	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2e-19
216591027872	crotonobetaine/carnitine-CoA ligase; Provisional; Region: PRK06155
216591027873	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591027874	Uncharacterized subfamily of fatty acid CoA ligase (FACL); Region: FACL_DitJ_like; cd05934
216591027875	acyl-activating enzyme (AAE) consensus motif; other site
216591027876	putative AMP binding site [chemical binding]; other site
216591027877	putative active site [active]
216591027878	putative CoA binding site [chemical binding]; other site
216591027879	HMMPfam hit to PF00501, AMP-binding enzyme, score 3e-89
216591027880	PS00455 Putative AMP-binding domain signature.
216591027881	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591027882	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591027883	The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_NahR_LinR_like; cd08459
216591027884	substrate binding pocket [chemical binding]; other site
216591027885	dimerization interface [polypeptide binding]; other site
216591027886	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-21
216591027887	Predicted helix-turn-helix motif with score 1917.000, SD 5.72 at aa 22-43, sequence RSLTRAAQRLHLSQPTISYSLG
216591027888	PS00044 Bacterial regulatory proteins, lysR family signature.
216591027889	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.7e-16
216591027890	Protein of unknown function (DUF2945); Region: DUF2945; pfam11160
216591027891	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591027892	Protein of unknown function, DUF488; Region: DUF488; pfam04343
216591027893	HMMPfam hit to PF06571, Protein of unknown function (DUF1130), score 4.8e-65
216591027894	type I secretion membrane fusion protein, HlyD family; Region: type_I_hlyD; TIGR01843
216591027895	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591027896	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591027897	PS00543 HlyD family secretion proteins signature.
216591027898	HMMPfam hit to PF00529, HlyD family secretion protein, score 8.6e-10
216591027899	1 probable transmembrane helix predicted for BCAM2140 by TMHMM2.0 at aa 2-19
216591027900	type I secretion system ATPase, LssB family; Region: type_I_sec_LssB; TIGR03375
216591027901	Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic); Region: Peptidase_C39_like; cl00296
216591027902	putative active site [active]
216591027903	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
216591027904	ATP-binding cassette domain of bacteriocin exporters, subfamily C; Region: ABCC_bacteriocin_exporters; cd03245
216591027905	Walker A/P-loop; other site
216591027906	ATP binding site [chemical binding]; other site
216591027907	Q-loop/lid; other site
216591027908	ABC transporter signature motif; other site
216591027909	Walker B; other site
216591027910	D-loop; other site
216591027911	H-loop/switch region; other site
216591027912	HMMPfam hit to PF00005, ABC transporter score 4.8e-53
216591027913	PS00211 ABC transporters family signature.
216591027914	PS00017 ATP/GTP-binding site motif A (P-loop).
216591027915	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 2.6e-07
216591027916	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591027917	3 probable transmembrane helices predicted for BCAM2141 by TMHMM2.0 at aa 170-192, 202-221 and 291-313
216591027918	type I secretion outer membrane protein, TolC family; Region: type_I_sec_TolC; TIGR01844
216591027919	HMMPfam hit to PF02321, Outer membrane efflux protein, score 6.6e-16
216591027920	HMMPfam hit to PF02321, Outer membrane efflux protein, score 6.6e-26
216591027921	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027922	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027923	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027924	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027925	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027926	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027927	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027928	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027929	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027930	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027931	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027932	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027933	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027934	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027935	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027936	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
216591027937	Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199
216591027938	type I secretion C-terminal target domain (VC_A0849 subclass); Region: T1SS_VCA0849; TIGR03661
216591027939	HMMPfam hit to PF00353, Hemolysin-type calcium-binding repeat, score 0.00015
216591027940	PS00330 Hemolysin-type calcium-binding region signature.
216591027941	HMMPfam hit to PF00353, Hemolysin-type calcium-binding repeat, score 2.1e-05
216591027942	HMMPfam hit to PF00353, Hemolysin-type calcium-binding repeat, score 0.01
216591027943	PS00330 Hemolysin-type calcium-binding region signature.
216591027944	HMMPfam hit to PF00353, Hemolysin-type calcium-binding repeat, score 0.0099
216591027945	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
216591027946	7 probable transmembrane helices predicted for BCAM2144 by TMHMM2.0 at aa 2-24, 29-51, 71-90, 100-118, 139-161, 195-217 and 224-242
216591027947	HMMPfam hit to PF01925, Domain of unknown function DUF81, score 2.4e-06
216591027948	Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]; Region: AnsP; COG1113
216591027949	Spore germination protein; Region: Spore_permease; cl17796
216591027950	HMMPfam hit to PF03845, Spore germination protein, score 0.0012
216591027951	HMMPfam hit to PF00324, Amino acid permease, score 2.2e-101
216591027952	12 probable transmembrane helices predicted for BCAM2145 by TMHMM2.0 at aa 17-39, 43-62, 74-96, 116-138, 151-173, 188-210, 237-259, 279-301, 327-349, 354-376, 397-419 and 424-443
216591027953	PS00218 Amino acid permeases signature.
216591027954	NnrU protein; Region: NnrU; pfam07298
216591027955	HMMPfam hit to PF07298, NnrU protein, score 2.2e-41
216591027956	5 probable transmembrane helices predicted for BCAM2146 by TMHMM2.0 at aa 2-21, 36-58, 71-93, 113-135 and 156-178
216591027957	TfoX N-terminal domain; Region: TfoX_N; pfam04993
216591027958	HMMPfam hit to PF04993, TfoX N-terminal domain, score 4.9e-17
216591027959	putative dehydrogenase; Provisional; Region: PRK10098
216591027960	HMMPfam hit to PF02615, Malate/L-lactate dehydrogenase, score 1.3e-118
216591027961	hypothetical protein; Provisional; Region: PRK07907
216591027962	Uncharacterized M20 Dipeptidases; Region: M20_dipept_like_5; cd05682
216591027963	metal binding site [ion binding]; metal-binding site
216591027964	putative dimer interface [polypeptide binding]; other site
216591027965	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 5.2e-16
216591027966	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 2e-14
216591027967	transcriptional activator FtrA; Provisional; Region: ftrA; PRK09393
216591027968	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591027969	conserved cys residue [active]
216591027970	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591027971	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.3e-06
216591027972	PS00041 Bacterial regulatory proteins, araC family signature.
216591027973	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 6.8e-07
216591027974	PS00041 Bacterial regulatory proteins, araC family signature.
216591027975	Predicted helix-turn-helix motif with score 1482.000, SD 4.23 at aa 229-250, sequence HTLASLAAQAAMSTRTLQRQFS
216591027976	HMMPfam hit to PF01965, DJ-1/PfpI family, score 3.7e-23
216591027977	Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins; Region: RHOD_PspE2; cd01521
216591027978	active site residue [active]
216591027979	HMMPfam hit to PF00581, Rhodanese-like domain, score 1.6e-09
216591027980	PS00380 Rhodanese signature 1.
216591027981	Superinfection immunity protein; Region: Imm_superinfect; pfam14373
216591027982	2 probable transmembrane helices predicted for BCAM2152 by TMHMM2.0 at aa 4-26 and 35-57
216591027983	Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]; Region: CypX; COG2124
216591027984	Cytochrome P450; Region: p450; cl12078
216591027985	PS00086 Cytochrome P450 cysteine heme-iron ligand signature.
216591027986	Uncharacterized small protein (DUF2158); Region: DUF2158; pfam09926
216591027987	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
216591027988	Phosphoenolpyruvate phosphomutase; Region: PEP_mutase; pfam13714
216591027989	tetramer interface [polypeptide binding]; other site
216591027990	active site
216591027991	Mg2+/Mn2+ binding site [ion binding]; other site
216591027992	Ankyrin repeats (many copies); Region: Ank_4; pfam13637
216591027993	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cl02529
216591027994	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591027995	Coenzyme A binding pocket [chemical binding]; other site
216591027996	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.4e-15
216591027997	Transcriptional regulators [Transcription]; Region: RpiR; COG1737
216591027998	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
216591027999	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
216591028000	putative active site [active]
216591028001	HMMPfam hit to PF01380, SIS domain, score 1.4e-11
216591028002	HMMPfam hit to PF01418, Helix-turn-helix domain, rpiR family, score 0.00016
216591028003	Bacterial OB fold (BOF) protein; Region: BOF; cl01196
216591028004	HMMPfam hit to PF04076, Domain unknown function (DUF388), score 4.9e-26
216591028005	1 probable transmembrane helix predicted for BCAM2159 by TMHMM2.0 at aa 7-29
216591028006	DNA-binding transcriptional regulator BasR; Provisional; Region: PRK10643
216591028007	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591028008	active site
216591028009	phosphorylation site [posttranslational modification]
216591028010	intermolecular recognition site; other site
216591028011	dimerization interface [polypeptide binding]; other site
216591028012	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591028013	DNA binding site [nucleotide binding]
216591028014	HMMPfam hit to PF00072, Response regulator receiver domain, score 5.9e-37
216591028015	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 4.5e-20
216591028016	sensor protein QseC; Provisional; Region: PRK10337
216591028017	HAMP domain; Region: HAMP; pfam00672
216591028018	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591028019	dimer interface [polypeptide binding]; other site
216591028020	phosphorylation site [posttranslational modification]
216591028021	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591028022	ATP binding site [chemical binding]; other site
216591028023	Mg2+ binding site [ion binding]; other site
216591028024	G-X-G motif; other site
216591028025	1 probable transmembrane helix predicted for BCAM2161 by TMHMM2.0 at aa 20-42
216591028026	HMMPfam hit to PF00672, HAMP domain, score 1.2e-08
216591028027	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 9.5e-14
216591028028	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 6.8e-37
216591028029	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591028030	MarR family; Region: MarR_2; pfam12802
216591028031	HMMPfam hit to PF01047, MarR family, score 8.7e-07
216591028032	Predicted helix-turn-helix motif with score 1365.000, SD 3.84 at aa 52-73, sequence PNIPQIADTMGITRQAVLKQIN
216591028033	Antibiotic biosynthesis monooxygenase; Region: ABM; pfam03992
216591028034	HMMPfam hit to PF03992, Antibiotic biosynthesis monooxygenase, score 7.2e-18
216591028035	Protein of unknown function (DUF805); Region: DUF805; cl01224
216591028036	2 probable transmembrane helices predicted for BCAM2164 by TMHMM2.0 at aa 5-27 and 34-56
216591028037	Beta-lactamase enzyme family; Region: Beta-lactamase2; pfam13354
216591028038	HMMPfam hit to PF00144, Beta-lactamase, score 6.4e-54
216591028039	PS00146 Beta-lactamase class-A active site.
216591028040	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591028041	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028042	The C-terminal substrate-binding domain of LysR-type trnascriptional regulator BlaA which involved in control of the beta-lactamase gene expression; contains the type 2 periplasmic binding fold; Region: PBP2_BlaA; cd08487
216591028043	putative dimerization interface [polypeptide binding]; other site
216591028044	putative substrate binding pocket [chemical binding]; other site
216591028045	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.3e-17
216591028046	Predicted helix-turn-helix motif with score 1352.000, SD 3.79 at aa 23-44, sequence LNFTRAGLELSVTQAAVSQQVR
216591028047	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028048	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.9e-48
216591028049	Glycogen debranching enzyme [Carbohydrate transport and metabolism]; Region: GDB1; COG3408
216591028050	Amylo-alpha-1,6-glucosidase; Region: GDE_C; pfam06202
216591028051	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028052	HMMPfam hit to PF06202, Amylo-alpha-1,6-glucosidase, score 2.3e-05
216591028053	Autotransporter-associated beta strand repeat; Region: Autotrns_rpt; pfam12951
216591028054	Autotransporter-associated beta strand repeat; Region: Autotrns_rpt; pfam12951
216591028055	Autotransporter-associated beta strand repeat; Region: Autotrns_rpt; pfam12951
216591028056	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
216591028057	Autotransporter beta-domain; Region: Autotransporter; pfam03797
216591028058	HMMPfam hit to PF03797, Autotransporter beta-domain, score 2.9e-37
216591028059	HMMPfam hit to PF05594, Haemagluttinin repeat, score 1.5
216591028060	HMMPfam hit to PF05594, Haemagluttinin repeat, score 4.4
216591028061	HMMPfam hit to PF05594, Haemagluttinin repeat, score 1.4
216591028062	HMMPfam hit to PF02415, no description, score 26
216591028063	HMMPfam hit to PF05594, Haemagluttinin repeat, score 3.5
216591028064	HMMPfam hit to PF05594, Haemagluttinin repeat, score 2.5
216591028065	HMMPfam hit to PF02415, no description, score 53
216591028066	YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259
216591028067	putative active site [active]
216591028068	HMMPfam hit to PF02698, DUF218 domain, score 2.1e-40
216591028069	1 probable transmembrane helix predicted for BCAM2170 by TMHMM2.0 at aa 13-35
216591028070	rod shape-determining protein MreB; Provisional; Region: PRK13930
216591028071	MreB and similar proteins; Region: MreB_like; cd10225
216591028072	nucleotide binding site [chemical binding]; other site
216591028073	Mg binding site [ion binding]; other site
216591028074	putative protofilament interaction site [polypeptide binding]; other site
216591028075	RodZ interaction site [polypeptide binding]; other site
216591028076	HMMPfam hit to PF06723, MreB/Mbl protein, score 3.8e-138
216591028077	Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; Region: RssA; COG1752
216591028078	Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1; Region: Pat_PNPLA6_PNPLA7_NTE1_like; cd07205
216591028079	active site
216591028080	nucleophile elbow; other site
216591028081	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
216591028082	Surface antigen; Region: Bac_surface_Ag; pfam01103
216591028083	HMMPfam hit to PF01734, Patatin-like phospholipase, score 4.1e-44
216591028084	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 4.5e-05
216591028085	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028086	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
216591028087	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591028088	HMMPfam hit to PF02525, Flavodoxin-like fold, score 9.2e-11
216591028089	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 0.00044
216591028090	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591028091	dimer interface [polypeptide binding]; other site
216591028092	phosphorylation site [posttranslational modification]
216591028093	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591028094	ATP binding site [chemical binding]; other site
216591028095	Mg2+ binding site [ion binding]; other site
216591028096	G-X-G motif; other site
216591028097	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 4.4e-23
216591028098	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.5e-15
216591028099	2 probable transmembrane helices predicted for BCAM2174 by TMHMM2.0 at aa 46-68 and 88-107
216591028100	DNA-binding transcriptional regulator RstA; Provisional; Region: PRK10701
216591028101	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591028102	active site
216591028103	phosphorylation site [posttranslational modification]
216591028104	intermolecular recognition site; other site
216591028105	dimerization interface [polypeptide binding]; other site
216591028106	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591028107	DNA binding site [nucleotide binding]
216591028108	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1.9e-19
216591028109	HMMPfam hit to PF00072, Response regulator receiver domain, score 8.4e-27
216591028110	Glutaminase [Amino acid transport and metabolism]; Region: GlsA; COG2066
216591028111	glutaminase; Provisional; Region: PRK00971
216591028112	HMMPfam hit to PF04960, Glutaminase, score 1.1e-163
216591028113	PS00012 Phosphopantetheine attachment site.
216591028114	Isochorismatase family; Region: Isochorismatase; pfam00857
216591028115	Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cd00431
216591028116	catalytic triad [active]
216591028117	conserved cis-peptide bond; other site
216591028118	HMMPfam hit to PF00857, Isochorismatase family, score 2e-07
216591028119	Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far.  This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases).  Plant T2 RNases are expressed during leaf...; Region: RNase_T2_prok; cd01062
216591028120	B1 nucleotide binding pocket [chemical binding]; other site
216591028121	B2 nucleotide binding pocket [chemical binding]; other site
216591028122	CAS motifs; other site
216591028123	active site
216591028124	HMMPfam hit to PF00445, Ribonuclease T2 family, score 6.8e-08
216591028125	PS00531 Ribonuclease T2 family histidine active site 2.
216591028126	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028127	PS00530 Ribonuclease T2 family histidine active site 1.
216591028128	Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]; Region: COG1765
216591028129	HMMPfam hit to PF02566, OsmC-like protein, score 4.9e-17
216591028130	1 probable transmembrane helix predicted for BCAM2181 by TMHMM2.0 at aa 7-26
216591028131	6 probable transmembrane helices predicted for BCAM2182 by TMHMM2.0 at aa 21-40, 50-72, 79-96, 100-122, 129-151 and 156-178
216591028132	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591028133	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591028134	non-specific DNA binding site [nucleotide binding]; other site
216591028135	salt bridge; other site
216591028136	sequence-specific DNA binding site [nucleotide binding]; other site
216591028137	Predicted helix-turn-helix motif with score 1997.000, SD 5.99 at aa 24-45, sequence VKQSHAAELFRVAQSTISRWEA
216591028138	HD domain; Region: HD_3; pfam13023
216591028139	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591028140	S-adenosylmethionine binding site [chemical binding]; other site
216591028141	HMMPfam hit to PF08241, Methyltransferase domain, score 1.4e-29
216591028142	HMMPfam hit to PF08242, Methyltransferase domain, score 4.4e-18
216591028143	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591028144	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591028145	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591028146	1 probable transmembrane helix predicted for BCAM2186 by TMHMM2.0 at aa 12-31
216591028147	HMMPfam hit to PF00529, HlyD family secretion protein, score 0.0003
216591028148	macrolide transporter ATP-binding /permease protein; Provisional; Region: PRK10535
216591028149	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
216591028150	Walker A/P-loop; other site
216591028151	ATP binding site [chemical binding]; other site
216591028152	Q-loop/lid; other site
216591028153	ABC transporter signature motif; other site
216591028154	Walker B; other site
216591028155	D-loop; other site
216591028156	H-loop/switch region; other site
216591028157	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
216591028158	FtsX-like permease family; Region: FtsX; pfam02687
216591028159	HMMPfam hit to PF00005, ABC transporter score 1.3e-61
216591028160	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028161	PS00211 ABC transporters family signature.
216591028162	4 probable transmembrane helices predicted for BCAM2187 by TMHMM2.0 at aa 303-325, 560-582, 609-631 and 641-663
216591028163	HMMPfam hit to PF02687, Predicted permease, score 1.3e-52
216591028164	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591028165	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028166	HMMPfam hit to PF02321, Outer membrane efflux protein, score 4.6e-23
216591028167	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.4e-19
216591028168	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591028169	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591028170	14 probable transmembrane helices predicted for BCAM2189 by TMHMM2.0 at aa 37-59, 74-96, 103-125, 129-151, 164-186, 191-213, 222-244, 254-273, 294-316, 320-342, 349-371, 381-400, 430-452 and 505-527
216591028171	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.3e-52
216591028172	PS00216 Sugar transport proteins signature 1.
216591028173	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591028174	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028175	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_6; cd08475
216591028176	putative effector binding pocket; other site
216591028177	putative dimerization interface [polypeptide binding]; other site
216591028178	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.9e-18
216591028179	Predicted helix-turn-helix motif with score 1385.000, SD 3.90 at aa 18-39, sequence GSFALAAERLDMTRSAVGKAIA
216591028180	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028181	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.5e-44
216591028182	3-hydroxyisobutyryl-CoA hydrolase; Provisional; Region: PRK05617
216591028183	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591028184	substrate binding site [chemical binding]; other site
216591028185	oxyanion hole (OAH) forming residues; other site
216591028186	trimer interface [polypeptide binding]; other site
216591028187	2-enoyl-CoA Hydratase C-terminal region; Region: ECH_C; pfam13766
216591028188	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 5.3e-31
216591028189	enoyl-CoA hydratase; Provisional; Region: PRK09076
216591028190	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591028191	substrate binding site [chemical binding]; other site
216591028192	oxyanion hole (OAH) forming residues; other site
216591028193	trimer interface [polypeptide binding]; other site
216591028194	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 9.8e-47
216591028195	PS00166 Enoyl-CoA hydratase/isomerase signature.
216591028196	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591028197	3-hydroxyisobutyrate dehydrogenase; Region: HIBADH; TIGR01692
216591028198	HMMPfam hit to PF03807, NADP oxidoreductase coenzyme F420-depen, score 0.0017
216591028199	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 4.9e-79
216591028200	PS00895 3-hydroxyisobutyrate dehydrogenase signature.
216591028201	Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085
216591028202	methylmalonic acid semialdehyde dehydrogenase; Region: MMSDH; TIGR01722
216591028203	tetrameric interface [polypeptide binding]; other site
216591028204	NAD binding site [chemical binding]; other site
216591028205	catalytic residues [active]
216591028206	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.4e-179
216591028207	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591028208	PS00070 Aldehyde dehydrogenases cysteine active site.
216591028209	Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]; Region: Acs; COG0365
216591028210	Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS); Region: MACS_like_1; cd05974
216591028211	active site
216591028212	acyl-activating enzyme (AAE) consensus motif; other site
216591028213	putative CoA binding site [chemical binding]; other site
216591028214	AMP binding site [chemical binding]; other site
216591028215	HMMPfam hit to PF00501, AMP-binding enzyme, score 2.7e-112
216591028216	PS00455 Putative AMP-binding domain signature.
216591028217	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591028218	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591028219	active site
216591028220	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 3.2e-66
216591028221	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 3.3e-37
216591028222	PS00073 Acyl-CoA dehydrogenases signature 2.
216591028223	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 2.7e-24
216591028224	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal doma, score 1.5e-35
216591028225	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591028226	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591028227	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028228	1 probable transmembrane helix predicted for BCAM2197 by TMHMM2.0 at aa 137-159
216591028229	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.8e-06
216591028230	Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]; Region: NfeD; COG1030
216591028231	Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease; Region: Clp_protease_NfeD_1; cd07020
216591028232	active site residues [active]
216591028233	dimer interface [polypeptide binding]; other site
216591028234	NfeD-like C-terminal, partner-binding; Region: NfeD; pfam01957
216591028235	5 probable transmembrane helices predicted for BCAM2198 by TMHMM2.0 at aa 299-321, 328-347, 352-369, 376-395 and 405-427
216591028236	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028237	HMMPfam hit to PF01957, Nodulation efficiency protein D (NfeD), score 1.9e-46
216591028238	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028239	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
216591028240	Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form...; Region: Band_7_stomatin_like; cd03403
216591028241	1 probable transmembrane helix predicted for BCAM2199 by TMHMM2.0 at aa 5-27
216591028242	HMMPfam hit to PF01145, SPFH domain / Band, score 5.9e-75
216591028243	haloacid dehalogenase-like hydrolase; Region: HAD; pfam12710
216591028244	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cd01066
216591028245	active site
216591028246	short chain dehydrogenase; Validated; Region: PRK05855
216591028247	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591028248	classical (c) SDRs; Region: SDR_c; cd05233
216591028249	NAD(P) binding site [chemical binding]; other site
216591028250	active site
216591028251	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3.6e-07
216591028252	HMMPfam hit to PF00106, short chain dehydrogenase, score 1e-21
216591028253	PS00061 Short-chain dehydrogenases/reductases family signature.
216591028254	Predicted metal-dependent hydrolase [General function prediction only]; Region: COG3687
216591028255	Predicted metal-dependent hydrolase; Region: Metal_hydrol; pfam10118
216591028256	1 probable transmembrane helix predicted for BCAM2203 by TMHMM2.0 at aa 200-222
216591028257	Protein of unknown function (DUF2917); Region: DUF2917; pfam11142
216591028258	Protein of unknown function (DUF2917); Region: DUF2917; pfam11142
216591028259	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
216591028260	HMMPfam hit to PF00860, Permease family, score 2e-44
216591028261	10 probable transmembrane helices predicted for BCAM2208 by TMHMM2.0 at aa 20-42, 54-76, 96-118, 135-157, 172-189, 196-218, 233-255, 325-347, 380-402 and 415-432
216591028262	PS00310 Lysosome-associated membrane glycoproteins duplicated domain signature.
216591028263	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028264	HMMPfam hit to PF00916, Sulfate transporter family, score 0.0044
216591028265	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028266	Protein of unknown function (DUF1488); Region: DUF1488; pfam07369
216591028267	PS00153 ATP synthase gamma subunit signature.
216591028268	Protein of unknown function (DUF2964); Region: DUF2964; pfam11177
216591028269	2 probable transmembrane helices predicted for BCAM2210 by TMHMM2.0 at aa 34-56 and 61-83
216591028270	Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]; Region: AcoR; COG3284
216591028271	GAF domain; Region: GAF; pfam01590
216591028272	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591028273	Walker A motif; other site
216591028274	ATP binding site [chemical binding]; other site
216591028275	Walker B motif; other site
216591028276	arginine finger; other site
216591028277	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591028278	HMMPfam hit to PF01590, GAF domain, score 6e-19
216591028279	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3.7e-120
216591028280	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591028281	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591028282	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 2.9e-09
216591028283	Predicted helix-turn-helix motif with score 1827.000, SD 5.41 at aa 611-632, sequence GNVSAAARELGLARNTVYRYLR
216591028284	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591028285	catalytic loop [active]
216591028286	iron binding site [ion binding]; other site
216591028287	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 3.9e-19
216591028288	Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; Region: SRPBCC_CalC_Aha1-like_5; cd08898
216591028289	putative hydrophobic ligand binding site [chemical binding]; other site
216591028290	Protein of unknown function (DUF2946); Region: DUF2946; pfam11162
216591028291	1 probable transmembrane helix predicted for BCAM2214 by TMHMM2.0 at aa 9-31
216591028292	CopC domain; Region: CopC; pfam04234
216591028293	HMMPfam hit to PF04234, Copper resistance protein CopC, score 5.2e-21
216591028294	1 probable transmembrane helix predicted for BCAM2215 by TMHMM2.0 at aa 5-27
216591028295	Protein of unknown function (DUF461); Region: DUF461; pfam04314
216591028296	Signal peptide predicted for BCAM2216 by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.989 between residues 22 and 23
216591028297	HMMPfam hit to PF04314, Protein of unknown function (DUF461), score 2.5e-30
216591028298	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591028299	5 probable transmembrane helices predicted for BCAM2217 by TMHMM2.0 at aa 22-44, 57-79, 83-105, 135-157 and 167-189
216591028300	HMMPfam hit to PF01810, LysE type translocator, score 2.2e-32
216591028301	PS00043 Bacterial regulatory proteins, gntR family signature.
216591028302	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028303	Leucine rich repeat; Region: LRR_8; pfam13855
216591028304	Protein Kinases, catalytic domain; Region: PKc_like; cl09925
216591028305	active site
216591028306	ATP binding site [chemical binding]; other site
216591028307	substrate binding site [chemical binding]; other site
216591028308	HMMPfam hit to PF00069, Protein kinase domain, score 2.1e-07
216591028309	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028310	PS00107 Protein kinases ATP-binding region signature.
216591028311	HMMPfam hit to PF00560, Leucine Rich Repeat, score 4.8
216591028312	HMMPfam hit to PF00560, Leucine Rich Repeat, score 1.6
216591028313	HMMPfam hit to PF00560, Leucine Rich Repeat, score 3.7
216591028314	HMMPfam hit to PF00560, Leucine Rich Repeat, score 5.1
216591028315	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028316	HMMPfam hit to PF00560, Leucine Rich Repeat, score 0.096
216591028317	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
216591028318	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028319	The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold; Region: PBP2_BudR; cd08451
216591028320	putative dimerization interface [polypeptide binding]; other site
216591028321	putative substrate binding pocket [chemical binding]; other site
216591028322	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.8e-38
216591028323	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-19
216591028324	Predicted helix-turn-helix motif with score 1578.000, SD 4.56 at aa 16-37, sequence SNFTKAAETLGIGQPPLSQQIK
216591028325	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591028326	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591028327	putative substrate translocation pore; other site
216591028328	12 probable transmembrane helices predicted for BCAM2220 by TMHMM2.0 at aa 35-57, 72-93, 100-122, 126-148, 155-177, 187-209, 239-261, 271-293, 300-322, 327-349, 362-384 and 388-407
216591028329	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.1e-38
216591028330	PS00216 Sugar transport proteins signature 1.
216591028331	siderophore transporter, RhtX/FptX family; Region: sider_RhtX_FptX; TIGR02718
216591028332	muropeptide transporter; Validated; Region: ampG; cl17669
216591028333	10 probable transmembrane helices predicted for BCAM2221 by TMHMM2.0 at aa 13-35, 50-72, 93-115, 150-172, 179-198, 227-249, 262-281, 285-307, 319-341 and 381-400
216591028334	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.5e-16
216591028335	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028336	PepSY-associated TM helix; Region: PepSY_TM_2; pfam13703
216591028337	10 probable transmembrane helices predicted for BCAM2222 by TMHMM2.0 at aa 12-34, 130-152, 165-182, 186-208, 311-333, 338-360, 373-395, 410-428, 441-460 and 464-483
216591028338	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028339	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028340	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.16
216591028341	3 probable transmembrane helices predicted for BCAM2223 by TMHMM2.0 at aa 5-27, 39-61 and 66-85
216591028342	Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]; Region: FhuE; COG4773
216591028343	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591028344	N-terminal plug; other site
216591028345	ligand-binding site [chemical binding]; other site
216591028346	HMMPfam hit to PF00593, TonB dependent receptor, score 7.3e-26
216591028347	PS01156 TonB-dependent receptor proteins signature 2.
216591028348	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 8e-14
216591028349	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
216591028350	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591028351	Walker A/P-loop; other site
216591028352	ATP binding site [chemical binding]; other site
216591028353	Q-loop/lid; other site
216591028354	ABC transporter signature motif; other site
216591028355	Walker B; other site
216591028356	D-loop; other site
216591028357	H-loop/switch region; other site
216591028358	HMMPfam hit to PF00005, ABC transporter score 2.8e-56
216591028359	PS00211 ABC transporters family signature.
216591028360	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028361	5 probable transmembrane helices predicted for BCAM2225 by TMHMM2.0 at aa 23-45, 55-77, 128-150, 155-172 and 243-265
216591028362	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
216591028363	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591028364	Walker A/P-loop; other site
216591028365	ATP binding site [chemical binding]; other site
216591028366	Q-loop/lid; other site
216591028367	ABC transporter signature motif; other site
216591028368	Walker B; other site
216591028369	D-loop; other site
216591028370	H-loop/switch region; other site
216591028371	HMMPfam hit to PF00005, ABC transporter score 2.6e-57
216591028372	PS00211 ABC transporters family signature.
216591028373	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028374	5 probable transmembrane helices predicted for BCAM2226 by TMHMM2.0 at aa 15-37, 50-72, 146-168, 243-262 and 267-289
216591028375	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028376	Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: PchG; COG4693
216591028377	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
216591028378	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Rossm, score 3.3e-25
216591028379	CDS contains a frameshift after codon 596. Similar to Pseudomonas aeruginosa pyochelin synthetase Pchf UniProt:Q9RFM7 (EMBL:AF184622 (1809 aa) fasta scores: E()=0, 61.778% id in 1834 aa
216591028380	HMMPfam hit to PF00975, Thioesterase domain, score 2.9e-05
216591028381	HMMPfam hit to PF08242, Methyltransferase domain, score 2.1e-11
216591028382	HMMPfam hit to PF00501, AMP-binding enzyme, score 9.3e-131
216591028383	HMMPfam hit to PF08415, Nonribosomal peptide synthase, score 1.2e-24
216591028384	HMMPfam hit to PF00668, Condensation domain, score 9.5e-19
216591028385	Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3433
216591028386	Condensation domain; Region: Condensation; pfam00668
216591028387	Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntF; COG1020
216591028388	Nonribosomal peptide synthase; Region: NRPS; pfam08415
216591028389	The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes; Region: A_NRPS_TlmIV_like; cd12114
216591028390	acyl-activating enzyme (AAE) consensus motif; other site
216591028391	AMP binding site [chemical binding]; other site
216591028392	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591028393	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
216591028394	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 2.9e-14
216591028395	PS00012 Phosphopantetheine attachment site.
216591028396	HMMPfam hit to PF08241, Methyltransferase domain, score 0.00095
216591028397	HMMPfam hit to PF08242, Methyltransferase domain, score 0.00041
216591028398	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.5e-132
216591028399	PS00455 Putative AMP-binding domain signature.
216591028400	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028401	HMMPfam hit to PF08415, Nonribosomal peptide synthase, score 3e-17
216591028402	HMMPfam hit to PF00668, Condensation domain, score 4e-28
216591028403	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 1.2e-06
216591028404	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591028405	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028406	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.8e-08
216591028407	PS00041 Bacterial regulatory proteins, araC family signature.
216591028408	2,3-dihydroxybenzoate-AMP ligase; Region: 23DHB-AMP_lg; cd05920
216591028409	Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: EntE; COG1021
216591028410	acyl-activating enzyme (AAE) consensus motif; other site
216591028411	active site
216591028412	AMP binding site [chemical binding]; other site
216591028413	substrate binding site [chemical binding]; other site
216591028414	HMMPfam hit to PF00501, AMP-binding enzyme, score 4.3e-106
216591028415	PS00455 Putative AMP-binding domain signature.
216591028416	Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: GrsT; COG3208
216591028417	Lipase.  Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of...; Region: Lipase; cl14883
216591028418	nucleophilic elbow; other site
216591028419	catalytic triad; other site
216591028420	HMMPfam hit to PF00975, Thioesterase domain, score 7e-56
216591028421	isochorismate-pyruvate lyase; Reviewed; Region: PRK07075
216591028422	HMMPfam hit to PF01817, Chorismate mutase type II, score 1.1e-22
216591028423	salicylate biosynthesis isochorismate synthase; Validated; Region: PRK07054
216591028424	chorismate binding enzyme; Region: Chorismate_bind; cl10555
216591028425	HMMPfam hit to PF00425, chorismate binding enzyme, score 1.2e-89
216591028426	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591028427	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028428	The C-terminal substrate domain of LysR-like regulator LrhA (LysR homologue A) and that of closely related homologs, contains the type 2 periplasmic binding fold; Region: PBP2_LrhA_like; cd08439
216591028429	putative dimerization interface [polypeptide binding]; other site
216591028430	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.1e-30
216591028431	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.1e-18
216591028432	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028433	Predicted helix-turn-helix motif with score 1195.000, SD 3.26 at aa 29-50, sequence RALSRAAARVGRTQSALSQQMK
216591028434	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591028435	4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]; Region: GabT; COG0160
216591028436	inhibitor-cofactor binding pocket; inhibition site
216591028437	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591028438	catalytic residue [active]
216591028439	HMMPfam hit to PF00202, Aminotransferase class-III, score 9.7e-167
216591028440	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591028441	17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374
216591028442	Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]; Region: COG4221
216591028443	NADP binding site [chemical binding]; other site
216591028444	active site
216591028445	steroid binding site; other site
216591028446	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00021
216591028447	HMMPfam hit to PF00106, short chain dehydrogenase, score 8.3e-19
216591028448	Cupin; Region: Cupin_6; pfam12852
216591028449	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028450	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591028451	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028452	PS00041 Bacterial regulatory proteins, araC family signature.
216591028453	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 6.6e-07
216591028454	Predicted helix-turn-helix motif with score 1046.000, SD 2.75 at aa 213-234, sequence WTIVELAKEAALSRSTFFERFS
216591028455	PS00041 Bacterial regulatory proteins, araC family signature.
216591028456	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.2e-07
216591028457	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
216591028458	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028459	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591028460	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028461	HMMPfam hit to PF02311, AraC-like ligand binding domain, score 1.6e-21
216591028462	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 4.4e-09
216591028463	Protein of unknown function (DUF2000); Region: DUF2000; pfam09391
216591028464	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591028465	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_5; cd07238
216591028466	dimer interface [polypeptide binding]; other site
216591028467	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 2.4e-10
216591028468	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
216591028469	EamA-like transporter family; Region: EamA; pfam00892
216591028470	EamA-like transporter family; Region: EamA; pfam00892
216591028471	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 3.7e-11
216591028472	9 probable transmembrane helices predicted for BCAM2243 by TMHMM2.0 at aa 28-50, 63-85, 90-112, 119-141, 145-162, 183-205, 215-237, 249-266 and 271-288
216591028473	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028474	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 7.3e-14
216591028475	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy_3; pfam13640
216591028476	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591028477	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028478	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591028479	dimerization interface [polypeptide binding]; other site
216591028480	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-13
216591028481	Predicted helix-turn-helix motif with score 1125.000, SD 3.02 at aa 20-41, sequence GRFKDAAVHVNRSPSSVTAQIQ
216591028482	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028483	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.8e-18
216591028484	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
216591028485	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591028486	Walker A/P-loop; other site
216591028487	ATP binding site [chemical binding]; other site
216591028488	Q-loop/lid; other site
216591028489	ABC transporter signature motif; other site
216591028490	Walker B; other site
216591028491	D-loop; other site
216591028492	H-loop/switch region; other site
216591028493	HMMPfam hit to PF00005, ABC transporter score 3e-50
216591028494	PS00211 ABC transporters family signature.
216591028495	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028496	leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livG; PRK11300
216591028497	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591028498	Walker A/P-loop; other site
216591028499	ATP binding site [chemical binding]; other site
216591028500	Q-loop/lid; other site
216591028501	ABC transporter signature motif; other site
216591028502	Walker B; other site
216591028503	D-loop; other site
216591028504	H-loop/switch region; other site
216591028505	HMMPfam hit to PF00005, ABC transporter score 7.8e-59
216591028506	PS00063 Aldo/keto reductase family putative active site signature.
216591028507	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028508	leucine/isoleucine/valine transporter permease subunit; Provisional; Region: livM; PRK11301
216591028509	Domain of unknown function (DUF3382); Region: DUF3382; pfam11862
216591028510	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591028511	TM-ABC transporter signature motif; other site
216591028512	9 probable transmembrane helices predicted for BCAM2249 by TMHMM2.0 at aa 20-42, 57-76, 97-114, 124-155, 168-190, 267-289, 317-339, 354-376 and 388-406
216591028513	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 5e-56
216591028514	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591028515	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591028516	TM-ABC transporter signature motif; other site
216591028517	8 probable transmembrane helices predicted for BCAM2250 by TMHMM2.0 at aa 28-50, 57-76, 80-102, 115-137, 164-186, 217-239, 254-276 and 293-310
216591028518	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.6e-48
216591028519	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591028520	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591028521	dimerization interface [polypeptide binding]; other site
216591028522	ligand binding site [chemical binding]; other site
216591028523	HMMPfam hit to PF01094, Receptor family ligand binding region, score 1.7e-68
216591028524	Similar to an internal region of Burkholderia xenovorans (strain lb400) YD repeat protein UniProt:Q13ML3 (EMBL:CP000271 (1531 aa) fasta scores: E()=3.7e-41, 38.407% id in 427 aa
216591028525	HMMPfam hit to PF05593, RHS Repeat, score 0.013
216591028526	HMMPfam hit to PF05593, RHS Repeat, score 0.49
216591028527	HMMPfam hit to PF05593, RHS Repeat, score 6.7
216591028528	HMMPfam hit to PF05593, RHS Repeat, score 0.0038
216591028529	HMMPfam hit to PF05593, RHS Repeat, score 3.8e-06
216591028530	PAAR motif; Region: PAAR_motif; pfam05488
216591028531	RHS Repeat; Region: RHS_repeat; cl11982
216591028532	Uncharacterized protein conserved in Bacteroidetes; Region: Bacuni_01323_like; cd12871
216591028533	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
216591028534	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
216591028535	RHS Repeat; Region: RHS_repeat; pfam05593
216591028536	RHS Repeat; Region: RHS_repeat; cl11982
216591028537	RHS Repeat; Region: RHS_repeat; pfam05593
216591028538	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
216591028539	RHS protein; Region: RHS; pfam03527
216591028540	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
216591028541	RES domain; Region: RES; smart00953
216591028542	HMMPfam hit to PF05593, RHS Repeat, score 3.6e-05
216591028543	HMMPfam hit to PF05593, RHS Repeat, score 0.11
216591028544	HMMPfam hit to PF05593, RHS Repeat, score 0.045
216591028545	HMMPfam hit to PF05593, RHS Repeat, score 0.88
216591028546	HMMPfam hit to PF05593, RHS Repeat, score 2e-06
216591028547	HMMPfam hit to PF05593, RHS Repeat, score 7.1e-07
216591028548	HMMPfam hit to PF05593, RHS Repeat, score 0.063
216591028549	HMMPfam hit to PF05593, RHS Repeat, score 0.63
216591028550	HMMPfam hit to PF05593, RHS Repeat, score 2.4
216591028551	HMMPfam hit to PF05593, RHS Repeat, score 1.4e-06
216591028552	HMMPfam hit to PF05593, RHS Repeat, score 2.3e-06
216591028553	HMMPfam hit to PF05593, RHS Repeat, score 1.8
216591028554	HMMPfam hit to PF05593, RHS Repeat, score 0.049
216591028555	HMMPfam hit to PF05593, RHS Repeat, score 0.8
216591028556	HMMPfam hit to PF05488, PAAR motif, score 1.2e-05
216591028557	HMMPfam hit to PF05488, PAAR motif, score 1.4e-07
216591028558	4 probable transmembrane helices predicted for BCAM2253 by TMHMM2.0 at aa 50-72, 79-101, 146-168 and 173-195
216591028559	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028560	Domain of unknown function (DUF1795); Region: DUF1795; cl02256
216591028561	type VI secretion system Vgr family protein; Region: VI_Rhs_Vgr; TIGR03361
216591028562	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591028563	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591028564	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 2.7e-39
216591028565	putative outer membrane lipoprotein; Provisional; Region: PRK09967
216591028566	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591028567	ligand binding site [chemical binding]; other site
216591028568	HMMPfam hit to PF00691, OmpA family, score 1.1e-25
216591028569	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028570	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028571	putative inner membrane diguanylate cyclase; Provisional; Region: PRK09966
216591028572	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591028573	metal binding site [ion binding]; metal-binding site
216591028574	active site
216591028575	I-site; other site
216591028576	HMMPfam hit to PF00990, GGDEF domain, score 4.6e-55
216591028577	HMMPfam hit to PF00672, HAMP domain, score 4.4e-09
216591028578	2 probable transmembrane helices predicted for BCAM2256 by TMHMM2.0 at aa 27-49 and 156-178
216591028579	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028580	Domain of unknown function (DUF4154); Region: DUF4154; pfam13689
216591028581	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591028582	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028583	TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440
216591028584	putative dimerization interface [polypeptide binding]; other site
216591028585	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.5e-20
216591028586	Predicted helix-turn-helix motif with score 1625.000, SD 4.72 at aa 28-49, sequence GTFHRAAEKLNLTQPGLSRRIQ
216591028587	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028588	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.2e-41
216591028589	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028590	N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3653
216591028591	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591028592	active site
216591028593	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591028594	PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2.
216591028595	HMMPfam hit to PF01979, Amidohydrolase family, score 0.024
216591028596	HMMPfam hit to PF07969, Amidohydrolase family, score 2.8e-09
216591028597	PS00190 Cytochrome c family heme-binding site signature.
216591028598	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591028599	HMMPfam hit to PF07908, D-aminoacylase, C-terminal region, score 9.2e-20
216591028600	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591028601	D-galactonate transporter; Region: 2A0114; TIGR00893
216591028602	putative substrate translocation pore; other site
216591028603	12 probable transmembrane helices predicted for BCAM2260 by TMHMM2.0 at aa 38-60, 75-97, 104-123, 133-155, 164-186, 196-218, 261-283, 298-315, 328-347, 352-374, 387-409 and 419-438
216591028604	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.6e-51
216591028605	amidase; Provisional; Region: PRK09201
216591028606	Amidase; Region: Amidase; cl11426
216591028607	HMMPfam hit to PF01425, Amidase, score 2.2e-90
216591028608	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591028609	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591028610	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591028611	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydroge, score 3.2e-06
216591028612	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080
216591028613	Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport...; Region: FNR_like; cl06868
216591028614	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591028615	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 1.2e-30
216591028616	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 5.9e-10
216591028617	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591028618	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591028619	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028620	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591028621	dimerization interface [polypeptide binding]; other site
216591028622	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-16
216591028623	Predicted helix-turn-helix motif with score 1696.000, SD 4.96 at aa 21-42, sequence GSFSSAARQLALTHSAISQQIR
216591028624	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028625	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.3e-22
216591028626	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028627	DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986
216591028628	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028629	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591028630	dimerization interface [polypeptide binding]; other site
216591028631	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.8e-45
216591028632	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028633	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.9e-20
216591028634	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028635	Predicted helix-turn-helix motif with score 1536.000, SD 4.42 at aa 16-37, sequence LHFGRAAARLHISQPPLSQQIR
216591028636	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG2159
216591028637	HMMPfam hit to PF04909, Amidohydrolase, score 1.9e-37
216591028638	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG2159
216591028639	active site
216591028640	HMMPfam hit to PF04909, Amidohydrolase, score 2.6e-50
216591028641	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Region: UbiD; pfam01977
216591028642	HMMPfam hit to PF01977, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, score 1.1e-76
216591028643	3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]; Region: UbiX; COG0163
216591028644	Flavoprotein; Region: Flavoprotein; pfam02441
216591028645	HMMPfam hit to PF02441, Flavoprotein, score 1.1e-42
216591028646	Putative GTPases (G3E family) [General function prediction only]; Region: COG0523
216591028647	The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage...; Region: CobW_like; cd03112
216591028648	P-loop, Walker A motif; other site
216591028649	Base recognition motif; other site
216591028650	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; pfam07683
216591028651	HMMPfam hit to PF02492, CobW/HypB/UreG, nucleotide-binding domain, score 2.4e-78
216591028652	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028653	HMMPfam hit to PF07683, Cobalamin synthesis protein cobW C-terminal, score 2.5e-29
216591028654	xanthine permease; Region: pbuX; TIGR03173
216591028655	HMMPfam hit to PF00860, Permease family, score 4.7e-110
216591028656	13 probable transmembrane helices predicted for BCAM2271 by TMHMM2.0 at aa 20-40, 50-72, 79-98, 103-125, 132-154, 164-186, 193-215, 230-252, 281-303, 318-340, 347-369, 379-401 and 414-436
216591028657	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028658	amidohydrolase; Provisional; Region: PRK12393
216591028659	TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are...; Region: ATZ_TRZ_like; cd01298
216591028660	active site
216591028661	putative substrate binding pocket [chemical binding]; other site
216591028662	HMMPfam hit to PF01979, Amidohydrolase family, score 3.2e-43
216591028663	HMMPfam hit to PF07969, Amidohydrolase family, score 0.00086
216591028664	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
216591028665	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase, score 7.5e-06
216591028666	Domain of unknown function (DUF4411); Region: DUF4411; pfam14367
216591028667	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591028668	non-specific DNA binding site [nucleotide binding]; other site
216591028669	salt bridge; other site
216591028670	sequence-specific DNA binding site [nucleotide binding]; other site
216591028671	Predicted Zn peptidase [Amino acid transport and metabolism]; Region: COG2856
216591028672	HMMPfam hit to PF06114, Domain of unknown function (DUF955), score 3.5e-27
216591028673	Predicted helix-turn-helix motif with score 1045.000, SD 2.75 at aa 286-307, sequence EMFAELASYFGVSREAVLRRLL
216591028674	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591028675	HMMPfam hit to PF01381, Helix-turn-helix, score 1.1e-05
216591028676	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591028677	ubiquinone biosynthesis hydroxylase family protein; Provisional; Region: PRK07608; cl17314
216591028678	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.3e-76
216591028679	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591028680	Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]; Region: idi; COG1304
216591028681	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl17186
216591028682	phosphate binding site [ion binding]; other site
216591028683	HMMPfam hit to PF01070, FMN-dependent dehydrogenase, score 7.2e-145
216591028684	PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site.
216591028685	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591028686	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591028687	DNA-binding site [nucleotide binding]; DNA binding site
216591028688	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
216591028689	HMMPfam hit to PF07729, FCD domain, score 8.7e-30
216591028690	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 1.3e-28
216591028691	PS00043 Bacterial regulatory proteins, gntR family signature.
216591028692	Predicted helix-turn-helix motif with score 1186.000, SD 3.23 at aa 35-56, sequence PPERELAERFGVSRTSVREALI
216591028693	Amidohydrolase; Region: Amidohydro_2; pfam04909
216591028694	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
216591028695	HMMPfam hit to PF04909, Amidohydrolase, score 1.8e-22
216591028696	Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Region: PBP1_ABC_sugar_binding_like_2; cd06310
216591028697	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591028698	putative ligand binding site [chemical binding]; other site
216591028699	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 0.00028
216591028700	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591028701	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591028702	TM-ABC transporter signature motif; other site
216591028703	9 probable transmembrane helices predicted for BCAM2281 by TMHMM2.0 at aa 36-57, 62-84, 88-107, 114-136, 141-163, 183-205, 242-261, 281-303 and 318-340
216591028704	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 9e-64
216591028705	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028706	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028707	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
216591028708	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591028709	Walker A/P-loop; other site
216591028710	ATP binding site [chemical binding]; other site
216591028711	Q-loop/lid; other site
216591028712	ABC transporter signature motif; other site
216591028713	Walker B; other site
216591028714	D-loop; other site
216591028715	H-loop/switch region; other site
216591028716	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591028717	HMMPfam hit to PF00005, ABC transporter score 7.9e-23
216591028718	PS00211 ABC transporters family signature.
216591028719	HMMPfam hit to PF00005, ABC transporter score 2.9e-54
216591028720	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028721	short chain dehydrogenase; Provisional; Region: PRK08628
216591028722	classical (c) SDRs; Region: SDR_c; cd05233
216591028723	NAD(P) binding site [chemical binding]; other site
216591028724	active site
216591028725	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.2e-17
216591028726	Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to...; Region: rTSbeta_L-fuconate_dehydratase; cd03324
216591028727	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]; Region: COG4948
216591028728	putative active site pocket [active]
216591028729	metal binding site [ion binding]; metal-binding site
216591028730	HMMPfam hit to PF01188, Mandelate racemase / muconate lactonizing en, score 1.5e-09
216591028731	PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.
216591028732	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
216591028733	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591028734	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 8.7e-76
216591028735	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
216591028736	human DHRS6-like, classical (c) SDRs; Region: DHRS6_like_SDR_c; cd05368
216591028737	NAD binding site [chemical binding]; other site
216591028738	homotetramer interface [polypeptide binding]; other site
216591028739	homodimer interface [polypeptide binding]; other site
216591028740	active site
216591028741	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00019
216591028742	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.1e-15
216591028743	PS00061 Short-chain dehydrogenases/reductases family signature.
216591028744	Domain of unknown function (DUF3331); Region: DUF3331; pfam11811
216591028745	short chain dehydrogenase; Provisional; Region: PRK06197
216591028746	retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs; Region: retinol-DH_like_SDR_c_like; cd05327
216591028747	putative NAD(P) binding site [chemical binding]; other site
216591028748	active site
216591028749	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.5e-07
216591028750	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591028751	gamma-butyrobetaine hydroxylase; Region: carnitine_bodg; TIGR02409
216591028752	Protein of unknown function (DUF971); Region: DUF971; cl01414
216591028753	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cd00250
216591028754	substrate binding pocket [chemical binding]; other site
216591028755	active site
216591028756	iron coordination sites [ion binding]; other site
216591028757	HMMPfam hit to PF02668, Taurine catabolism dioxygenase TauD, TfdA fa, score 2.2e-23
216591028758	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591028759	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 2.1e-61
216591028760	PS01174 Lipolytic enzymes G-D-X-G family, putative serine active site.
216591028761	PS01173 Lipolytic enzymes G-D-X-G family, putative histidine active site.
216591028762	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
216591028763	active site
216591028764	3-hydroxybutyryl-CoA dehydrogenase; Validated; Region: PRK07066
216591028765	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
216591028766	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591028767	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 1.7e-15
216591028768	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, score 8.9e-60
216591028769	Prokaryotic protein of unknown function (DUF849); Region: DUF849; pfam05853
216591028770	HMMPfam hit to PF05853, Prokaryotic protein of unknown function (DUF, score 1.1e-202
216591028771	choline ABC transporter, periplasmic binding protein; Region: ABC_choline_bnd; TIGR03414
216591028772	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; COG2113
216591028773	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 6.1e-64
216591028774	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591028775	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028776	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591028777	dimerization interface [polypeptide binding]; other site
216591028778	substrate binding pocket [chemical binding]; other site
216591028779	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.8e-31
216591028780	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.8e-21
216591028781	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028782	Predicted helix-turn-helix motif with score 1249.000, SD 3.44 at aa 17-38, sequence GGFTPAAGALHVAQSALSRQIG
216591028783	Protein of unknown function, DUF606; Region: DUF606; pfam04657
216591028784	HMMPfam hit to PF04657, Protein of unknown function, DUF606, score 1.8e-26
216591028785	5 probable transmembrane helices predicted for BCAM2297 by TMHMM2.0 at aa 5-27, 34-56, 71-93, 100-122 and 127-145
216591028786	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
216591028787	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591028788	NAD(P) binding site [chemical binding]; other site
216591028789	catalytic residues [active]
216591028790	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 4.3e-250
216591028791	PS00070 Aldehyde dehydrogenases cysteine active site.
216591028792	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591028793	PS00017 ATP/GTP-binding site motif A (P-loop).
216591028794	Cytochrome c; Region: Cytochrom_C; pfam00034
216591028795	HMMPfam hit to PF00034, Cytochrome c, score 0.022
216591028796	PS00190 Cytochrome c family heme-binding site signature.
216591028797	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028798	Cytochrome c; Region: Cytochrom_C; pfam00034
216591028799	HMMPfam hit to PF00034, Cytochrome c, score 2.7e-08
216591028800	PS00190 Cytochrome c family heme-binding site signature.
216591028801	Methylamine dehydrogenase, L chain; Region: Me-amine-dh_L; cl03812
216591028802	HMMPfam hit to PF02975, Methylamine dehydrogenase, L chain, score 5e-36
216591028803	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028804	Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for...; Region: mauD; cd02967
216591028805	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591028806	catalytic residues [active]
216591028807	HMMPfam hit to PF08534, Redoxin, score 1.5e-05
216591028808	1 probable transmembrane helix predicted for BCAM2302A by TMHMM2.0 at aa 5-27
216591028809	Methylamine utilisation protein MauE; Region: MauE; pfam07291
216591028810	5 probable transmembrane helices predicted for BCAM2303 by TMHMM2.0 at aa 6-25, 46-68, 73-95, 119-138 and 153-175
216591028811	methylamine dehydrogenase (amicyanin) heavy chain; Region: TTQ_MADH_Hv; TIGR02658
216591028812	HMMPfam hit to PF06433, Methylamine dehydrogenase heavy chain (, score 1.2e-26
216591028813	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591028814	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028815	PS00041 Bacterial regulatory proteins, araC family signature.
216591028816	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 5.6e-05
216591028817	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591028818	AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_ArgR_like; cd03136
216591028819	conserved cys residue [active]
216591028820	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028821	HMMPfam hit to PF01965, DJ-1/PfpI family, score 2.2e-05
216591028822	Predicted helix-turn-helix motif with score 1133.000, SD 3.05 at aa 228-249, sequence LGSDALAREVSITRRQLERLFS
216591028823	PS00041 Bacterial regulatory proteins, araC family signature.
216591028824	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.8e-13
216591028825	Fungalysin/Thermolysin Propeptide Motif; Region: FTP; pfam07504
216591028826	Peptidase propeptide and YPEB domain; Region: PepSY; pfam03413
216591028827	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
216591028828	Zn binding site [ion binding]; other site
216591028829	1 probable transmembrane helix predicted for BCAM2307 by TMHMM2.0 at aa 7-26
216591028830	HMMPfam hit to PF07504, Fungalysin/Thermolysin Propeptide Motif, score 1.4e-07
216591028831	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591028832	M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase; Region: M28_AAP; cd03879
216591028833	Peptidase family M28; Region: Peptidase_M28; pfam04389
216591028834	active site
216591028835	metal binding site [ion binding]; metal-binding site
216591028836	1 probable transmembrane helix predicted for BCAM2308 by TMHMM2.0 at aa 9-31
216591028837	HMMPfam hit to PF04389, Peptidase family M28, score 7.8e-40
216591028838	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 0.002
216591028839	Putative heavy-metal-binding; Region: YbjQ_1; cl00426
216591028840	HMMPfam hit to PF01906, Domain of unknown function DUF74, score 5.3e-32
216591028841	H+ Antiporter protein; Region: 2A0121; TIGR00900
216591028842	HMMPfam hit to PF05977, Bacterial protein of unknown function (DUF89, score 1.8e-05
216591028843	8 probable transmembrane helices predicted for BCAM2310 by TMHMM2.0 at aa 32-51, 56-78, 99-121, 172-194, 228-250, 265-284, 297-319 and 377-399
216591028844	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.4e-21
216591028845	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591028846	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591028847	trimer interface [polypeptide binding]; other site
216591028848	eyelet of channel; other site
216591028849	HMMPfam hit to PF00267, Gram-negative porin, score 2.7e-05
216591028850	choline ABC transporter, periplasmic binding protein; Region: ABC_choline_bnd; TIGR03414
216591028851	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; COG2113
216591028852	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 1.2e-72
216591028853	choline-sulfatase; Region: chol_sulfatase; TIGR03417
216591028854	Sulfatase; Region: Sulfatase; cl17466
216591028855	Choline sulfatase enzyme C terminal; Region: Choline_sulf_C; pfam12411
216591028856	HMMPfam hit to PF00884, Sulfatase, score 3.4e-39
216591028857	PS00387 Inorganic pyrophosphatase signature.
216591028858	PS00523 Sulfatases signature 1.
216591028859	putative choline sulfate-utilization transcription factor; Region: chol_sulf_TF; TIGR03418
216591028860	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028861	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591028862	dimerization interface [polypeptide binding]; other site
216591028863	substrate binding pocket [chemical binding]; other site
216591028864	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.5e-18
216591028865	Predicted helix-turn-helix motif with score 1425.000, SD 4.04 at aa 30-51, sequence ASFTAAARELGSTQPAVSQQVY
216591028866	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-33
216591028867	formyltetrahydrofolate deformylase; Reviewed; Region: PRK13011
216591028868	N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); Region: ACT_F4HF-DF; cd04875
216591028869	Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Region: FMT_core_Formyl-FH4-Hydrolase_C; cd08648
216591028870	putative active site [active]
216591028871	putative substrate binding site [chemical binding]; other site
216591028872	putative cosubstrate binding site; other site
216591028873	catalytic site [active]
216591028874	HMMPfam hit to PF00551, Formyl transferase, score 1.1e-28
216591028875	Amino acid permease; Region: AA_permease_2; pfam13520
216591028876	12 probable transmembrane helices predicted for BCAM2316 by TMHMM2.0 at aa 36-58, 62-84, 114-136, 163-185, 198-217, 248-270, 291-313, 336-358, 414-436, 451-473, 480-502 and 528-550
216591028877	HMMPfam hit to PF00324, Amino acid permease, score 0.00094
216591028878	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028879	Substrate binding domain of ABC-type glycine betaine transport system; Region: OpuAC; pfam04069
216591028880	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; COG2113
216591028881	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 4e-88
216591028882	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
216591028883	Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron...; Region: FNR_iron_sulfur_binding_1; cd06215
216591028884	FAD binding pocket [chemical binding]; other site
216591028885	FAD binding motif [chemical binding]; other site
216591028886	phosphate binding motif [ion binding]; other site
216591028887	beta-alpha-beta structure motif; other site
216591028888	NAD binding pocket [chemical binding]; other site
216591028889	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
216591028890	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591028891	catalytic loop [active]
216591028892	iron binding site [ion binding]; other site
216591028893	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 3.3e-17
216591028894	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591028895	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 1.5e-12
216591028896	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 7.7e-24
216591028897	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
216591028898	Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469
216591028899	[2Fe-2S] cluster binding site [ion binding]; other site
216591028900	C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_GbcA-like; cd08884
216591028901	putative alpha subunit interface [polypeptide binding]; other site
216591028902	putative active site [active]
216591028903	putative substrate binding site [chemical binding]; other site
216591028904	Fe binding site [ion binding]; other site
216591028905	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591028906	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 1.4e-24
216591028907	Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide; Region: AANH_like; cl00292
216591028908	Electron transfer flavoprotein domain; Region: ETF; pfam01012
216591028909	HMMPfam hit to PF01012, Electron transfer flavoprotein domain, score 0.00034
216591028910	Electron transfer flavoprotein, alpha subunit [Energy production and conversion]; Region: FixB; COG2025
216591028911	Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766
216591028912	HMMPfam hit to PF00766, Electron transfer flavoprotein FAD-binding, score 3.1e-31
216591028913	Domain of unknown function (DUF3483); Region: DUF3483; pfam11982
216591028914	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
216591028915	4Fe-4S binding domain; Region: Fer4; cl02805
216591028916	Cysteine-rich domain; Region: CCG; pfam02754
216591028917	Cysteine-rich domain; Region: CCG; pfam02754
216591028918	PS01047 Heavy-metal-associated domain.
216591028919	HMMPfam hit to PF02754, Cysteine-rich domain, score 3.5e-15
216591028920	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591028921	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0014
216591028922	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591028923	6 probable transmembrane helices predicted for BCAM2322 by TMHMM2.0 at aa 5-22, 29-48, 71-93, 100-116, 131-153 and 160-182
216591028924	mycofactocin system FadH/OYE family oxidoreductase 2; Region: mycofact_OYE_2; TIGR03997
216591028925	Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as...; Region: OYE_like_3_FMN; cd04734
216591028926	putative active site [active]
216591028927	putative FMN binding site [chemical binding]; other site
216591028928	putative substrate binding site [chemical binding]; other site
216591028929	putative catalytic residue [active]
216591028930	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591028931	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoredu, score 9.9e-06
216591028932	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoredu, score 0.0039
216591028933	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 7.3e-66
216591028934	The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons; Region: V4R; smart00989
216591028935	HMMPfam hit to PF02830, V4R domain, score 5e-11
216591028936	Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]; Region: COG2355
216591028937	renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics; Region: rDP_like; cd01301
216591028938	active site
216591028939	dimer interface [polypeptide binding]; other site
216591028940	HMMPfam hit to PF01244, Membrane dipeptidase (Peptidase family, score 4.4e-148
216591028941	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028942	serine hydroxymethyltransferase; Reviewed; Region: PRK13034
216591028943	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
216591028944	dimer interface [polypeptide binding]; other site
216591028945	active site
216591028946	glycine-pyridoxal phosphate binding site [chemical binding]; other site
216591028947	folate binding site [chemical binding]; other site
216591028948	HMMPfam hit to PF00464, Serine hydroxymethyltransferase, score 8.9e-250
216591028949	PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.
216591028950	PS00213 Lipocalin signature.
216591028951	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591028952	AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_ArgR_like; cd03136
216591028953	conserved cys residue [active]
216591028954	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591028955	HMMPfam hit to PF01965, DJ-1/PfpI family, score 1.2e-06
216591028956	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.1e-09
216591028957	Predicted helix-turn-helix motif with score 2286.000, SD 6.97 at aa 264-285, sequence LSREELARLANMSQRQLQRLFR
216591028958	PS00041 Bacterial regulatory proteins, araC family signature.
216591028959	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 9.7e-06
216591028960	Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]; Region: TolB; COG0823
216591028961	F5/8 type C domain; Region: F5_F8_type_C; pfam00754
216591028962	sugar binding site [chemical binding]; other site
216591028963	HMMPfam hit to PF00754, F5/8 type C domain, score 5e-27
216591028964	1 probable transmembrane helix predicted for BCAM2328 by TMHMM2.0 at aa 7-29
216591028965	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591028966	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591028967	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591028968	DNA-binding site [nucleotide binding]; DNA binding site
216591028969	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591028970	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591028971	homodimer interface [polypeptide binding]; other site
216591028972	catalytic residue [active]
216591028973	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 5.5e-12
216591028974	HMMPfam hit to PF00155, Aminotransferase class I and II, score 3.3e-14
216591028975	Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]; Region: COG2956
216591028976	1 probable transmembrane helix predicted for BCAM2330 by TMHMM2.0 at aa 97-119
216591028977	EamA-like transporter family; Region: EamA; pfam00892
216591028978	EamA-like transporter family; Region: EamA; pfam00892
216591028979	10 probable transmembrane helices predicted for BCAM2331 by TMHMM2.0 at aa 7-24, 29-48, 61-83, 93-112, 119-138, 143-162, 175-197, 207-229, 236-255 and 260-282
216591028980	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2.2e-17
216591028981	HMMPfam hit to PF03151, Triose-phosphate Transporter family, score 0.0015
216591028982	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.8e-21
216591028983	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591028984	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591028985	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591028986	dimerization interface [polypeptide binding]; other site
216591028987	substrate binding pocket [chemical binding]; other site
216591028988	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.1e-29
216591028989	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.1e-20
216591028990	PS00044 Bacterial regulatory proteins, lysR family signature.
216591028991	Predicted helix-turn-helix motif with score 2059.000, SD 6.20 at aa 20-41, sequence GSMKQAADLLCISPGAVSQHVR
216591028992	formaldehyde dehydrogenase, glutathione-independent; Region: fdhA_non_GSH; TIGR02819
216591028993	Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH); Region: PFDH_like; cd08282
216591028994	NAD binding site [chemical binding]; other site
216591028995	catalytic Zn binding site [ion binding]; other site
216591028996	structural Zn binding site [ion binding]; other site
216591028997	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 7.5e-15
216591028998	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 4.8e-39
216591028999	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591029000	multidrug efflux system protein EmrA; Provisional; Region: PRK15136
216591029001	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591029002	HMMPfam hit to PF00529, HlyD family secretion protein, score 1.2e-50
216591029003	1 probable transmembrane helix predicted for BCAM2334 by TMHMM2.0 at aa 31-50
216591029004	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591029005	HMMPfam hit to PF02321, Outer membrane efflux protein, score 7.6e-27
216591029006	HMMPfam hit to PF02321, Outer membrane efflux protein, score 8.3e-13
216591029007	1 probable transmembrane helix predicted for BCAM2335 by TMHMM2.0 at aa 19-41
216591029008	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029009	RfbF is a putative dTDP-rhamnosyl transferase; Region: GT2_RfbF_like; cd02526
216591029010	Ligand binding site; other site
216591029011	L-rhamnosyltransferase; Region: rhamnosyltran; TIGR01556
216591029012	PS00215 Mitochondrial energy transfer proteins signature.
216591029013	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591029014	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029015	putative substrate translocation pore; other site
216591029016	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029017	12 probable transmembrane helices predicted for BCAM2337 by TMHMM2.0 at aa 75-97, 104-126, 130-152, 164-186, 191-213, 220-242, 257-275, 296-318, 328-350, 357-374, 384-406 and 504-521
216591029018	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.7e-53
216591029019	This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the...; Region: GT1_Gtf_like; cd03784
216591029020	active site
216591029021	TDP-binding site; other site
216591029022	acceptor substrate-binding pocket; other site
216591029023	HMMPfam hit to PF00201, UDP-glucoronosyl and UDP-glucosyl tra, score 0.00094
216591029024	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029025	HMMPfam hit to PF03033, Glycosyltransferase family, score 2.1e-12
216591029026	Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]; Region: STE14; COG2020
216591029027	HMMPfam hit to PF04140, Isoprenylcysteine carboxyl methyltransferase, score 4.6e-07
216591029028	4 probable transmembrane helices predicted for BCAM2339 by TMHMM2.0 at aa 4-21, 42-64, 74-96 and 117-139
216591029029	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591029030	transcriptional regulator BetI; Validated; Region: PRK00767
216591029031	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591029032	Bacterial transcriptional repressor; Region: TetR_C_6; pfam13977
216591029033	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 4.2e-12
216591029034	PS01081 Bacterial regulatory proteins, tetR family signature.
216591029035	Predicted helix-turn-helix motif with score 1629.000, SD 4.74 at aa 30-51, sequence TTLASVAQRANISTGIVSHYFG
216591029036	betaine aldehyde dehydrogenase; Provisional; Region: PRK13252
216591029037	NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1; Region: ALDH_F9_TMBADH; cd07090
216591029038	tetrameric interface [polypeptide binding]; other site
216591029039	NAD binding site [chemical binding]; other site
216591029040	catalytic residues [active]
216591029041	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.8e-254
216591029042	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591029043	PS00070 Aldehyde dehydrogenases cysteine active site.
216591029044	choline dehydrogenase; Validated; Region: PRK02106
216591029045	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591029046	HMMPfam hit to PF00732, GMC oxidoreductase, score 8.6e-150
216591029047	PS00623 GMC oxidoreductases signature 1.
216591029048	PS00624 GMC oxidoreductases signature 2.
216591029049	HMMPfam hit to PF05199, GMC oxidoreductase, score 4.3e-68
216591029050	Outer membrane protein W [Cell envelope biogenesis, outer membrane]; Region: OmpW; COG3047
216591029051	HMMPfam hit to PF03922, OmpW family, score 1e-11
216591029052	Protein of unknown function (DUF2957); Region: DUF2957; pfam11170
216591029053	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029054	Protein of unknown function (DUF2957); Region: DUF2957; pfam11170
216591029055	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029056	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029057	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029058	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029059	Cupin domain; Region: Cupin_2; cl17218
216591029060	HMMPfam hit to PF07883, Cupin domain, score 0.00072
216591029061	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
216591029062	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
216591029063	Walker A/P-loop; other site
216591029064	ATP binding site [chemical binding]; other site
216591029065	Q-loop/lid; other site
216591029066	ABC transporter signature motif; other site
216591029067	Walker B; other site
216591029068	D-loop; other site
216591029069	H-loop/switch region; other site
216591029070	HMMPfam hit to PF00005, ABC transporter score 4.3e-54
216591029071	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029072	PS00211 ABC transporters family signature.
216591029073	ABC-2 type transporter; Region: ABC2_membrane; cl17235
216591029074	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
216591029075	HMMPfam hit to PF01061, ABC-2 type transporter score 1.2e-40
216591029076	7 probable transmembrane helices predicted for BCAM2351 by TMHMM2.0 at aa 21-43, 58-80, 115-134, 138-160, 167-189, 194-216 and 223-245
216591029077	PS00890 ABC-2 type transport system integral membrane proteins signature.
216591029078	benzoate transport; Region: 2A0115; TIGR00895
216591029079	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029080	putative substrate translocation pore; other site
216591029081	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029082	HMMPfam hit to PF00083, Sugar (and other) transporter score 6.1e-22
216591029083	11 probable transmembrane helices predicted for BCAM2352 by TMHMM2.0 at aa 26-48, 60-82, 97-119, 150-172, 176-195, 268-290, 300-322, 329-351, 355-377, 398-417 and 421-443
216591029084	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 8.9e-53
216591029085	PS00216 Sugar transport proteins signature 1.
216591029086	PS00217 Sugar transport proteins signature 2.
216591029087	PS00216 Sugar transport proteins signature 1.
216591029088	PAS fold; Region: PAS_4; pfam08448
216591029089	Septum formation initiator; Region: DivIC; cl17659
216591029090	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591029091	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591029092	dimer interface [polypeptide binding]; other site
216591029093	phosphorylation site [posttranslational modification]
216591029094	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591029095	ATP binding site [chemical binding]; other site
216591029096	G-X-G motif; other site
216591029097	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
216591029098	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591029099	active site
216591029100	phosphorylation site [posttranslational modification]
216591029101	intermolecular recognition site; other site
216591029102	dimerization interface [polypeptide binding]; other site
216591029103	HMMPfam hit to PF08448, PAS fold, score 0.0016
216591029104	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 0.0013
216591029105	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 1.2e-34
216591029106	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.6e-14
216591029107	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3795
216591029108	HMMPfam hit to PF04946, DGPF domain, score 1.2e-54
216591029109	DinB superfamily; Region: DinB_2; pfam12867
216591029110	PS00018 EF-hand calcium-binding domain.
216591029111	Lipase (class 2); Region: Lipase_2; pfam01674
216591029112	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Region: menH_SHCHC; TIGR03695
216591029113	Novel bacterial esterase that cleaves esters on halogenated cyclic compounds; Region: Esterase_713_like; cl17303
216591029114	catalytic site [active]
216591029115	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 4.4e-07
216591029116	PS00120 Lipases, serine active site.
216591029117	Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: COG2819
216591029118	Predicted esterase [General function prediction only]; Region: COG0627
216591029119	1 probable transmembrane helix predicted for BCAM2358 by TMHMM2.0 at aa 11-33
216591029120	HMMPfam hit to PF00756, Putative esterase, score 3.2e-32
216591029121	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591029122	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029123	Predicted helix-turn-helix motif with score 1660.000, SD 4.84 at aa 22-43, sequence RSSSEIARLSGVSQPTVSRLRL
216591029124	pyrroloquinoline quinone biosynthesis protein PqqE; Provisional; Region: PRK05301
216591029125	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591029126	FeS/SAM binding site; other site
216591029127	radical SAM additional 4Fe4S-binding SPASM domain; Region: rSAM_more_4Fe4S; TIGR04085
216591029128	HMMPfam hit to PF04055, Radical SAM superfamily, score 6e-27
216591029129	coenzyme PQQ biosynthesis protein PqqD; Region: PQQ_PqqD; TIGR03859
216591029130	HMMPfam hit to PF05402, Coenzyme PQQ synthesis protein D (PqqD), score 1.5e-12
216591029131	pyrroloquinoline quinone biosynthesis protein PqqC; Provisional; Region: PRK05157
216591029132	HMMPfam hit to PF03070, TENA/THI-4/PQQC family, score 2.2e-64
216591029133	pyrroloquinoline quinone biosynthesis protein PqqB; Provisional; Region: PRK05184
216591029134	coenzyme PQQ biosynthesis protein B; Region: PQQ_syn_pqqB; TIGR02108
216591029135	coenzyme PQQ synthesis protein PqqA; Provisional; Region: pqqA; PRK00284
216591029136	HMMPfam hit to PF08042, PqqA family, score 6e-09
216591029137	Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]; Region: AcoR; COG3284
216591029138	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591029139	Walker A motif; other site
216591029140	ATP binding site [chemical binding]; other site
216591029141	Walker B motif; other site
216591029142	arginine finger; other site
216591029143	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591029144	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 2.7e-10
216591029145	Predicted helix-turn-helix motif with score 1770.000, SD 5.22 at aa 643-664, sequence GNVSAAARALGVSRNTIYRKMP
216591029146	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3.7e-119
216591029147	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591029148	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591029149	HMMPfam hit to PF01590, GAF domain, score 3.5e-10
216591029150	proline iminopeptidase, Neisseria-type subfamily; Region: pro_imino_pep_1; TIGR01249
216591029151	homoserine O-acetyltransferase; Provisional; Region: metX; cl17114
216591029152	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3.7e-23
216591029153	Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]; Region: CirA; COG1629
216591029154	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591029155	N-terminal plug; other site
216591029156	ligand-binding site [chemical binding]; other site
216591029157	HMMPfam hit to PF00593, TonB dependent receptor, score 6.7e-32
216591029158	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 3.6e-15
216591029159	PQQ-dependent dehydrogenase, methanol/ethanol family; Region: PQQ_enz_alc_DH; TIGR03075
216591029160	Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); Region: PQQ_ADH_I; cd10277
216591029161	dimer interface [polypeptide binding]; other site
216591029162	Trp docking motif [polypeptide binding]; other site
216591029163	active site
216591029164	1 probable transmembrane helix predicted for BCAM2368 by TMHMM2.0 at aa 13-35
216591029165	HMMPfam hit to PF01011, PQQ enzyme repeat, score 2.9e-06
216591029166	HMMPfam hit to PF01011, PQQ enzyme repeat, score 1.5e-05
216591029167	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
216591029168	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591029169	membrane-bound complex binding site; other site
216591029170	hinge residues; other site
216591029171	Cytochrome C oxidase, cbb3-type, subunit III; Region: Cytochrome_CBB3; pfam13442
216591029172	PS00190 Cytochrome c family heme-binding site signature.
216591029173	High potential iron-sulfur protein; Region: HIPIP; pfam01355
216591029174	HMMPfam hit to PF01355, High potential iron-sulfur protein, score 5.3e-21
216591029175	PS00596 High potential iron-sulfur proteins signature.
216591029176	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
216591029177	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
216591029178	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591029179	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
216591029180	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591029181	DNA binding residues [nucleotide binding]
216591029182	HMMPfam hit to PF03979, Sigma-70 factor, region, score 3.5e-05
216591029183	HMMPfam hit to PF00140, Sigma-70 factor, region, score 1.3e-10
216591029184	HMMPfam hit to PF04542, Sigma-70 region, score 1.8e-27
216591029185	PS00715 Sigma-70 factors family signature 1.
216591029186	HMMPfam hit to PF04539, Sigma-70 region, score 1.3e-13
216591029187	HMMPfam hit to PF04545, Sigma-70, region, score 6.6e-15
216591029188	Predicted helix-turn-helix motif with score 1497.000, SD 4.29 at aa 587-608, sequence YSLREIGRQLNLSAERVRQLEV
216591029189	PS00716 Sigma-70 factors family signature 2.
216591029190	acetyl-CoA synthetase; Provisional; Region: PRK00174
216591029191	Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); Region: ACS; cd05966
216591029192	active site
216591029193	CoA binding site [chemical binding]; other site
216591029194	acyl-activating enzyme (AAE) consensus motif; other site
216591029195	AMP binding site [chemical binding]; other site
216591029196	acetate binding site [chemical binding]; other site
216591029197	HMMPfam hit to PF00501, AMP-binding enzyme, score 4.2e-135
216591029198	PS00455 Putative AMP-binding domain signature.
216591029199	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591029200	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591029201	trimer interface [polypeptide binding]; other site
216591029202	eyelet of channel; other site
216591029203	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591029204	dimer interface [polypeptide binding]; other site
216591029205	Methyl-accepting chemotaxis protein (MCP) signalling domain; Region: MCPsignal; pfam00015
216591029206	putative CheW interface [polypeptide binding]; other site
216591029207	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 1.2e-08
216591029208	lipoprotein releasing system, transmembrane protein, LolC/E family; Region: lolCE; TIGR02212
216591029209	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
216591029210	FtsX-like permease family; Region: FtsX; pfam02687
216591029211	4 probable transmembrane helices predicted for BCAM2376 by TMHMM2.0 at aa 30-52, 279-301, 334-356 and 383-405
216591029212	HMMPfam hit to PF02687, Predicted permease, score 5.1e-43
216591029213	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029214	X-Pro dipeptidyl-peptidase (S15 family); Region: Peptidase_S15; pfam02129
216591029215	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
216591029216	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; Region: PepX_C; pfam08530
216591029217	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029218	HMMPfam hit to PF02129, X-Pro dipeptidyl-peptidase (S15 family), score 5e-92
216591029219	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029220	HMMPfam hit to PF08530, X-Pro dipeptidyl-peptidase C-terminal n, score 3.5e-54
216591029221	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cd02883
216591029222	nudix motif; other site
216591029223	HMMPfam hit to PF00293, NUDIX domain, score 1.6e-15
216591029224	PS00893 mutT domain signature.
216591029225	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
216591029226	Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; Region: HPPR; cd12156
216591029227	putative ligand binding site [chemical binding]; other site
216591029228	NAD binding site [chemical binding]; other site
216591029229	catalytic site [active]
216591029230	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 3.2e-19
216591029231	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 1.7e-71
216591029232	PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
216591029233	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; cl17891
216591029234	Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]; Region: OpuBC; COG1732
216591029235	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 2e-69
216591029236	ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]; Region: OpuBB; COG1174
216591029237	11 probable transmembrane helices predicted for BCAM2382 by TMHMM2.0 at aa 17-36, 51-73, 80-102, 117-139, 146-168, 188-210, 223-245, 255-277, 308-327, 332-354 and 361-383
216591029238	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.2e-16
216591029239	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029240	ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]; Region: OpuBA; COG1125
216591029241	ATP-binding cassette domain of the osmoprotectant transporter; Region: ABC_OpuCA_Osmoprotection; cd03295
216591029242	Walker A/P-loop; other site
216591029243	ATP binding site [chemical binding]; other site
216591029244	Q-loop/lid; other site
216591029245	ABC transporter signature motif; other site
216591029246	Walker B; other site
216591029247	D-loop; other site
216591029248	H-loop/switch region; other site
216591029249	HMMPfam hit to PF00005, ABC transporter score 9.5e-56
216591029250	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029251	PS00211 ABC transporters family signature.
216591029252	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591029253	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591029254	ABC-ATPase subunit interface; other site
216591029255	5 probable transmembrane helices predicted for BCAM2384 by TMHMM2.0 at aa 15-37, 63-85, 117-139, 187-209 and 224-246
216591029256	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591029257	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.4e-20
216591029258	Rifampin ADP-ribosyl transferase; Region: Arr-ms; pfam12120
216591029259	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
216591029260	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591029261	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591029262	catalytic residue [active]
216591029263	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 2.9e-13
216591029264	Dihydroneopterin aldolase [Coenzyme metabolism]; Region: FolB; COG1539
216591029265	active site
216591029266	Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]; Region: COG4583
216591029267	HMMPfam hit to PF04268, Sarcosine oxidase, gamma subunit family, score 1.3e-37
216591029268	sarcosine oxidase, alpha subunit family, heterotetrameric form; Region: soxA; TIGR01372
216591029269	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_4; pfam13510
216591029270	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591029271	Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669
216591029272	HMMPfam hit to PF01571, Glycine cleavage T-protein (aminomethyl t, score 1.7e-80
216591029273	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 8.3e-05
216591029274	Sarcosine oxidase delta subunit [Amino acid transport and metabolism]; Region: SoxD; COG4311
216591029275	HMMPfam hit to PF04267, Sarcosine oxidase, delta subunit family, score 1.8e-39
216591029276	sarcosine oxidase, beta subunit family, heterotetrameric form; Region: soxB; TIGR01373
216591029277	hydroxyglutarate oxidase; Provisional; Region: PRK11728
216591029278	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 5.8e-88
216591029279	L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720
216591029280	Serine dehydratase beta chain; Region: SDH_beta; pfam03315
216591029281	Serine dehydratase alpha chain; Region: SDH_alpha; pfam03313
216591029282	HMMPfam hit to PF03313, Serine dehydratase alpha chain, score 3.7e-167
216591029283	HMMPfam hit to PF03315, Serine dehydratase beta chain, score 5.1e-59
216591029284	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029285	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591029286	AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_ArgR_like; cd03136
216591029287	conserved cys residue [active]
216591029288	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591029289	HMMPfam hit to PF01965, DJ-1/PfpI family, score 5e-06
216591029290	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 2.3e-06
216591029291	Predicted helix-turn-helix motif with score 1844.000, SD 5.47 at aa 250-271, sequence LPLEELACKLDLSTRQLERLFK
216591029292	PS00041 Bacterial regulatory proteins, araC family signature.
216591029293	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 2.1e-10
216591029294	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591029295	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591029296	DNA-binding site [nucleotide binding]; DNA binding site
216591029297	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
216591029298	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 7.4e-22
216591029299	HMMPfam hit to PF08279, HTH domain, score 0.0028
216591029300	PS00043 Bacterial regulatory proteins, gntR family signature.
216591029301	Predicted helix-turn-helix motif with score 1129.000, SD 3.03 at aa 34-55, sequence PTEAVLAQEFGVSRTVIREAIS
216591029302	HMMPfam hit to PF07729, FCD domain, score 1.1e-36
216591029303	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084
216591029304	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591029305	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 4.1e-53
216591029306	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3395
216591029307	HMMPfam hit to PF07005, Protein of unknown function, DUF1537, score 7.3e-103
216591029308	putative aldolase; Validated; Region: PRK08130
216591029309	intersubunit interface [polypeptide binding]; other site
216591029310	active site
216591029311	Zn2+ binding site [ion binding]; other site
216591029312	HMMPfam hit to PF00596, Class II Aldolase and Adducin N-terminal, score 2.3e-41
216591029313	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029314	D-galactonate transporter; Region: 2A0114; TIGR00893
216591029315	putative substrate translocation pore; other site
216591029316	HMMPfam hit to PF00083, Sugar (and other) transporter score 0.00018
216591029317	12 probable transmembrane helices predicted for BCAM2398 by TMHMM2.0 at aa 28-47, 62-84, 97-116, 122-144, 156-178, 191-213, 259-281, 291-313, 326-343, 347-369, 376-398 and 413-435
216591029318	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4e-59
216591029319	Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]; Region: Hfi; COG3622
216591029320	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 1.9e-48
216591029321	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
216591029322	Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs; Region: Gne_like_SDR_e; cd05238
216591029323	putative NAD(P) binding site [chemical binding]; other site
216591029324	active site
216591029325	putative substrate binding site [chemical binding]; other site
216591029326	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.3e-06
216591029327	HMMPfam hit to PF04321, RmlD substrate binding domain, score 2.9e-06
216591029328	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 0.00084
216591029329	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase f, score 6.8e-18
216591029330	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/i, score 6.2e-08
216591029331	HMMPfam hit to PF07993, Male sterility protein, score 2.3e-09
216591029332	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591029333	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591029334	Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases [Posttranslational modification, protein turnover, chaperones]; Region: COG3555
216591029335	HMMPfam hit to PF05118, Aspartyl/Asparaginyl beta-hydroxylase, score 5.9e-24
216591029336	Ubiquitin-like proteins; Region: UBQ; cl00155
216591029337	charged pocket; other site
216591029338	hydrophobic patch; other site
216591029339	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.93
216591029340	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 9.6
216591029341	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 0.51
216591029342	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 20
216591029343	HMMPfam hit to PF02012, BNR/Asp-box repeat, score 4.5
216591029344	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591029345	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591029346	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591029347	dimerization interface [polypeptide binding]; other site
216591029348	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.4e-25
216591029349	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.4e-20
216591029350	PS00044 Bacterial regulatory proteins, lysR family signature.
216591029351	Predicted helix-turn-helix motif with score 1862.000, SD 5.53 at aa 20-41, sequence GTFKAAADELSVTPAAVSHQIK
216591029352	Bacterial Transmembrane Pair family; Region: BTP; pfam05232
216591029353	Bacterial Transmembrane Pair family; Region: BTP; pfam05232
216591029354	HMMPfam hit to PF05232, Bacterial Transmembrane Pair family, score 4.2e-13
216591029355	4 probable transmembrane helices predicted for BCAM2405 by TMHMM2.0 at aa 12-30, 34-56, 77-96 and 106-128
216591029356	HMMPfam hit to PF05232, Bacterial Transmembrane Pair family, score 1.7e-28
216591029357	Predicted membrane protein [Function unknown]; Region: COG2860
216591029358	UPF0126 domain; Region: UPF0126; pfam03458
216591029359	HMMPfam hit to PF03458, UPF0126 domain, score 2e-24
216591029360	7 probable transmembrane helices predicted for BCAM2406 by TMHMM2.0 at aa 39-61, 66-88, 101-120, 125-144, 151-170, 175-197 and 204-226
216591029361	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029362	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029363	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029364	HMMPfam hit to PF03458, UPF0126 domain, score 3.7e-23
216591029365	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; COG2113
216591029366	choline ABC transporter, periplasmic binding protein; Region: ABC_choline_bnd; TIGR03414
216591029367	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 8.1e-68
216591029368	1 probable transmembrane helix predicted for BCAM2407 by TMHMM2.0 at aa 5-24
216591029369	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591029370	AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_ArgR_like; cd03136
216591029371	conserved cys residue [active]
216591029372	Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion; Region: enolase_like; cl17188
216591029373	metal binding site [ion binding]; metal-binding site
216591029374	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591029375	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.6e-07
216591029376	PS00041 Bacterial regulatory proteins, araC family signature.
216591029377	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 2.2e-08
216591029378	Predicted helix-turn-helix motif with score 1808.000, SD 5.34 at aa 245-266, sequence LSLEELARLVRLSQRHLQRMFK
216591029379	HMMPfam hit to PF01965, DJ-1/PfpI family, score 5.3e-10
216591029380	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591029381	dimer interface [polypeptide binding]; other site
216591029382	conserved gate region; other site
216591029383	putative PBP binding loops; other site
216591029384	ABC-ATPase subunit interface; other site
216591029385	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 7.2e-32
216591029386	5 probable transmembrane helices predicted for BCAM2409 by TMHMM2.0 at aa 44-66, 68-85, 90-112, 132-154 and 213-235
216591029387	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591029388	ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]; Region: ProV; COG4175
216591029389	ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; Region: ABC_Pro_Gly_Betaine; cd03294
216591029390	Walker A/P-loop; other site
216591029391	ATP binding site [chemical binding]; other site
216591029392	Q-loop/lid; other site
216591029393	ABC transporter signature motif; other site
216591029394	Walker B; other site
216591029395	D-loop; other site
216591029396	H-loop/switch region; other site
216591029397	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
216591029398	HMMPfam hit to PF00005, ABC transporter score 2.2e-65
216591029399	PS00211 ABC transporters family signature.
216591029400	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029401	Predicted membrane protein (DUF2339); Region: DUF2339; pfam10101
216591029402	32 probable transmembrane helices predicted for BCAM2411 by TMHMM2.0 at aa 2-19, 23-42, 205-227, 237-259, 266-285, 289-311, 318-335, 345-362, 367-389, 399-416, 429-446, 450-472, 479-501, 505-522, 527-549, 564-583, 590-612, 632-650, 657-679, 684-706, 719-741, 761-783, 795-817, 827-849, 862-884, 899-921, 926-948, 963-982, 994-1016, 1036-1058, 1065-1084 and 1094-1113
216591029403	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591029404	Protein of unknown function (DUF3999); Region: DUF3999; pfam13163
216591029405	1 probable transmembrane helix predicted for BCAM2412 by TMHMM2.0 at aa 419-441
216591029406	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591029407	Coenzyme A binding pocket [chemical binding]; other site
216591029408	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.2e-16
216591029409	NIPSNAP; Region: NIPSNAP; pfam07978
216591029410	HMMPfam hit to PF07978, NIPSNAP, score 5.8e-34
216591029411	Predicted flavoprotein [General function prediction only]; Region: COG0431
216591029412	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591029413	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 2.6e-10
216591029414	Haemolysin secretion/activation protein ShlB/FhaC/HecB; Region: ShlB; pfam03865
216591029415	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
216591029416	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591029417	trimer interface [polypeptide binding]; other site
216591029418	YadA-like C-terminal region; Region: YadA; pfam03895
216591029419	1 probable transmembrane helix predicted for BCAM2418 by TMHMM2.0 at aa 33-55
216591029420	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029421	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029422	HMMPfam hit to PF05658, Hep_Hag, score 2.9e-05
216591029423	HMMPfam hit to PF05658, Hep_Hag, score 1.1
216591029424	HMMPfam hit to PF05658, Hep_Hag, score 0.0016
216591029425	HMMPfam hit to PF05658, Hep_Hag, score 1.5
216591029426	HMMPfam hit to PF05658, Hep_Hag, score 1.4
216591029427	HMMPfam hit to PF05658, Hep_Hag, score 1.1
216591029428	HMMPfam hit to PF05658, Hep_Hag, score 1.3e-05
216591029429	HMMPfam hit to PF05662, Haemagglutinin, score 3.2e-07
216591029430	HMMPfam hit to PF05658, Hep_Hag, score 0.00056
216591029431	HMMPfam hit to PF05662, Haemagglutinin, score 8.6e-08
216591029432	HMMPfam hit to PF05658, Hep_Hag, score 0.0014
216591029433	HMMPfam hit to PF05658, Hep_Hag, score 0.027
216591029434	HMMPfam hit to PF05658, Hep_Hag, score 0.00012
216591029435	HMMPfam hit to PF05658, Hep_Hag, score 0.0011
216591029436	HMMPfam hit to PF05658, Hep_Hag, score 0.13
216591029437	HMMPfam hit to PF05658, Hep_Hag, score 2.3e-05
216591029438	HMMPfam hit to PF05662, Haemagglutinin, score 7.1e-09
216591029439	HMMPfam hit to PF05662, Haemagglutinin, score 1.1e-07
216591029440	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
216591029441	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591029442	ligand binding site [chemical binding]; other site
216591029443	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029444	HMMPfam hit to PF00691, OmpA family, score 2.6e-25
216591029445	Protein of unknown function (DUF2827); Region: DUF2827; pfam10933
216591029446	Protein of unknown function (DUF2827); Region: DUF2827; pfam10933
216591029447	Protein of unknown function (DUF4019); Region: DUF4019; pfam13211
216591029448	Protein of unknown function (DUF2827); Region: DUF2827; pfam10933
216591029449	methyltransferase, FkbM family; Region: fkbM_fam; TIGR01444
216591029450	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029451	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
216591029452	HMMPfam hit to PF00563, EAL domain, score 8.7e-14
216591029453	Protein of unknown function (DUF2827); Region: DUF2827; pfam10933
216591029454	galactosyl transferase GMA12/MNN10 family; Region: Glyco_transf_34; cl05288
216591029455	phospholipase C, phosphocholine-specific, Pseudomonas-type; Region: PC_PLC; TIGR03396
216591029456	Phosphoesterase family; Region: Phosphoesterase; pfam04185
216591029457	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591029458	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591029459	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 1.1e-19
216591029460	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 8e-26
216591029461	HMMPfam hit to PF04185, Phosphoesterase family, score 1.9e-144
216591029462	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029463	Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]; Region: COG4770
216591029464	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
216591029465	ATP-grasp domain; Region: ATP-grasp_4; cl17255
216591029466	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
216591029467	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
216591029468	carboxyltransferase (CT) interaction site; other site
216591029469	biotinylation site [posttranslational modification]; other site
216591029470	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 5.8e-22
216591029471	PS00188 Biotin-requiring enzymes attachment site.
216591029472	HMMPfam hit to PF02785, Biotin carboxylase C-terminal domain, score 1.4e-44
216591029473	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591029474	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 6.1e-102
216591029475	HMMPfam hit to PF02655, ATP-grasp domain, score 0.0018
216591029476	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591029477	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase,, score 0.00016
216591029478	HMMPfam hit to PF02222, ATP-grasp domain, score 0.003
216591029479	PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
216591029480	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 1.8e-46
216591029481	enoyl-CoA hydratase; Provisional; Region: PRK05995
216591029482	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591029483	substrate binding site [chemical binding]; other site
216591029484	oxyanion hole (OAH) forming residues; other site
216591029485	trimer interface [polypeptide binding]; other site
216591029486	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 2.4e-32
216591029487	3-methylcrotonyl-CoA carboxylase, beta chain; Region: PLN02820
216591029488	malonate decarboxylase subunit beta; Reviewed; Region: PRK07189; cl17682
216591029489	HMMPfam hit to PF01039, Carboxyl transferase domain, score 2.5e-219
216591029490	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029491	isovaleryl-CoA dehydrogenase; Region: PLN02519
216591029492	Isovaleryl-CoA dehydrogenase; Region: IVD; cd01156
216591029493	substrate binding site [chemical binding]; other site
216591029494	FAD binding site [chemical binding]; other site
216591029495	catalytic base [active]
216591029496	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 2.1e-54
216591029497	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 3.1e-10
216591029498	PS00073 Acyl-CoA dehydrogenases signature 2.
216591029499	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029500	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 1e-27
216591029501	PS00072 Acyl-CoA dehydrogenases signature 1.
216591029502	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal doma, score 1.8e-43
216591029503	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591029504	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591029505	YsiA-like protein, C-terminal region; Region: TetR_C_4; pfam08359
216591029506	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 1.2e-15
216591029507	Predicted helix-turn-helix motif with score 1804.000, SD 5.33 at aa 20-41, sequence ATAAEIAQRVGVSEATVFSYFR
216591029508	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
216591029509	MarR family; Region: MarR; pfam01047
216591029510	HMMPfam hit to PF01047, MarR family, score 1.8e-13
216591029511	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
216591029512	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cl00938
216591029513	iron-sulfur cluster [ion binding]; other site
216591029514	[2Fe-2S] cluster binding site [ion binding]; other site
216591029515	C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_DMO-like; cd08878
216591029516	alpha subunit interface [polypeptide binding]; other site
216591029517	active site
216591029518	substrate binding site [chemical binding]; other site
216591029519	Fe binding site [ion binding]; other site
216591029520	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 3.3e-21
216591029521	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
216591029522	Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal  ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur; Region: PDR_like; cd06185
216591029523	FMN-binding pocket [chemical binding]; other site
216591029524	flavin binding motif; other site
216591029525	phosphate binding motif [ion binding]; other site
216591029526	beta-alpha-beta structure motif; other site
216591029527	NAD binding pocket [chemical binding]; other site
216591029528	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591029529	catalytic loop [active]
216591029530	iron binding site [ion binding]; other site
216591029531	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 4.1e-07
216591029532	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 3.4e-09
216591029533	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 5.2e-18
216591029534	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591029535	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029536	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
216591029537	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591029538	N-terminal plug; other site
216591029539	ligand-binding site [chemical binding]; other site
216591029540	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 1.9e-21
216591029541	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591029542	HMMPfam hit to PF00593, TonB dependent receptor, score 9.6e-26
216591029543	PS00213 Lipocalin signature.
216591029544	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
216591029545	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591029546	substrate binding pocket [chemical binding]; other site
216591029547	membrane-bound complex binding site; other site
216591029548	hinge residues; other site
216591029549	1 probable transmembrane helix predicted for BCAM2441 by TMHMM2.0 at aa 25-42
216591029550	Cytochrome c; Region: Cytochrom_C; cl11414
216591029551	Cytochrome c; Region: Cytochrom_C; cl11414
216591029552	HMMPfam hit to PF00034, Cytochrome c, score 1.2e-09
216591029553	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029554	PS00190 Cytochrome c family heme-binding site signature.
216591029555	HMMPfam hit to PF00034, Cytochrome c, score 0.00021
216591029556	PS00190 Cytochrome c family heme-binding site signature.
216591029557	Cytochrome c [Energy production and conversion]; Region: COG3258
216591029558	Cytochrome c; Region: Cytochrom_C; pfam00034
216591029559	PS00190 Cytochrome c family heme-binding site signature.
216591029560	HMMPfam hit to PF00034, Cytochrome c, score 0.013
216591029561	PS00190 Cytochrome c family heme-binding site signature.
216591029562	SMP-30/Gluconolaconase/LRE-like region; Region: SGL; pfam08450
216591029563	Glutathione-dependent formaldehyde-activating enzyme; Region: GFA; cl01553
216591029564	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591029565	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591029566	trimer interface [polypeptide binding]; other site
216591029567	eyelet of channel; other site
216591029568	HMMPfam hit to PF00267, Gram-negative porin, score 3.6e-07
216591029569	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591029570	6 probable transmembrane helices predicted for BCAM2447 by TMHMM2.0 at aa 5-27, 39-61, 71-93, 113-135, 150-172 and 185-204
216591029571	HMMPfam hit to PF01810, LysE type translocator, score 3.7e-30
216591029572	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
216591029573	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591029574	Coenzyme A binding pocket [chemical binding]; other site
216591029575	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.2e-14
216591029576	Calcineurin-like phosphoesterase superfamily domain; Region: Metallophos_2; pfam12850
216591029577	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
216591029578	active site
216591029579	metal binding site [ion binding]; metal-binding site
216591029580	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 8.7e-22
216591029581	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591029582	TAP-like protein; Region: Abhydrolase_4; pfam08386
216591029583	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 0.00022
216591029584	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591029585	dimerization interface [polypeptide binding]; other site
216591029586	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591029587	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591029588	ATP binding site [chemical binding]; other site
216591029589	Mg2+ binding site [ion binding]; other site
216591029590	G-X-G motif; other site
216591029591	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 7.1e-38
216591029592	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 0.00031
216591029593	HMMPfam hit to PF00672, HAMP domain, score 4.4e-15
216591029594	2 probable transmembrane helices predicted for BCAM2451 by TMHMM2.0 at aa 13-35 and 155-177
216591029595	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029596	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591029597	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591029598	active site
216591029599	phosphorylation site [posttranslational modification]
216591029600	intermolecular recognition site; other site
216591029601	dimerization interface [polypeptide binding]; other site
216591029602	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591029603	DNA binding site [nucleotide binding]
216591029604	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.8e-17
216591029605	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.4e-41
216591029606	TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA...; Region: TlpA_like_DipZ_like; cd03012
216591029607	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591029608	catalytic residues [active]
216591029609	1 probable transmembrane helix predicted for BCAM2453 by TMHMM2.0 at aa 7-26
216591029610	HMMPfam hit to PF08534, Redoxin, score 1.3e-13
216591029611	Transcriptional regulator [Transcription]; Region: PaiB; COG2808
216591029612	HMMPfam hit to PF04299, Putative FMN-binding domain, score 2.1e-76
216591029613	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591029614	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591029615	DNA-binding site [nucleotide binding]; DNA binding site
216591029616	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591029617	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591029618	homodimer interface [polypeptide binding]; other site
216591029619	catalytic residue [active]
216591029620	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 2.6e-15
216591029621	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.1e-06
216591029622	Transglycosylase; Region: Transgly; pfam00912
216591029623	penicillin-binding protein, 1A family; Region: PBP_1a_fam; TIGR02074
216591029624	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
216591029625	1 probable transmembrane helix predicted for BCAM2456 by TMHMM2.0 at aa 49-71
216591029626	HMMPfam hit to PF00912, Transglycosylase, score 2e-86
216591029627	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029628	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 1.7e-30
216591029629	Adenosine deaminase [Nucleotide transport and metabolism]; Region: Add; COG1816
216591029630	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591029631	active site
216591029632	HMMPfam hit to PF00962, Adenosine/AMP deaminase, score 2.7e-38
216591029633	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
216591029634	12 probable transmembrane helices predicted for BCAM2459 by TMHMM2.0 at aa 34-56, 69-91, 111-133, 140-162, 182-200, 207-229, 256-278, 298-320, 335-357, 364-381, 394-416 and 429-446
216591029635	HMMPfam hit to PF00916, Sulfate transporter family, score 0.0024
216591029636	HMMPfam hit to PF00860, Permease family, score 4.4e-09
216591029637	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029638	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591029639	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591029640	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591029641	dimerization interface [polypeptide binding]; other site
216591029642	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 9.1e-15
216591029643	Predicted helix-turn-helix motif with score 1376.000, SD 3.87 at aa 49-70, sequence RSFTQAAQALSLTQPALTASIR
216591029644	PS00044 Bacterial regulatory proteins, lysR family signature.
216591029645	HMMPfam hit to PF03466, LysR substrate binding domain, score 8.6e-31
216591029646	nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the...; Region: nuc_hydro_IU_UC_XIUA; cd02651
216591029647	active site
216591029648	tetramer interface [polypeptide binding]; other site
216591029649	HMMPfam hit to PF01156, Inosine-uridine preferring nucleoside hy, score 2.8e-92
216591029650	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029651	PS01247 Inosine-uridine preferring nucleoside hydrolase family signature.
216591029652	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
216591029653	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591029654	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591029655	trimer interface [polypeptide binding]; other site
216591029656	eyelet of channel; other site
216591029657	HMMPfam hit to PF00267, Gram-negative porin, score 9.3e-05
216591029658	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029659	benzoate transport; Region: 2A0115; TIGR00895
216591029660	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029661	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029662	HMMPfam hit to PF00083, Sugar (and other) transporter score 2.8e-07
216591029663	12 probable transmembrane helices predicted for BCAM2464 by TMHMM2.0 at aa 38-60, 82-104, 111-129, 139-158, 171-193, 203-220, 290-312, 322-343, 350-369, 374-396, 409-431 and 435-457
216591029664	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.1e-23
216591029665	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591029666	PS00217 Sugar transport proteins signature 2.
216591029667	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029668	PS01159 WW/rsp5/WWP domain signature.
216591029669	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: COG3264
216591029670	Protein of unknown function (DUF3772); Region: DUF3772; pfam12607
216591029671	Mechanosensitive ion channel; Region: MS_channel; pfam00924
216591029672	11 probable transmembrane helices predicted for BCAM2465 by TMHMM2.0 at aa 21-43, 232-254, 275-297, 312-334, 346-368, 383-405, 426-448, 453-475, 513-535, 565-582 and 602-624
216591029673	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 2.3e-47
216591029674	Group II intron - IBS3
216591029675	RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651
216591029676	Reverse transcriptase (RNA-dependent DNA polymerase); Region: RVT_1; pfam00078
216591029677	putative active site [active]
216591029678	putative NTP binding site [chemical binding]; other site
216591029679	putative nucleic acid binding site [nucleotide binding]; other site
216591029680	Group II intron, maturase-specific domain; Region: GIIM; pfam08388
216591029681	HMMPfam hit to PF08388, Group II intron, maturase-specific domain, score 2e-24
216591029682	HMMPfam hit to PF00078, Reverse transcriptase (RNA-dependent DNA pol, score 1.9e-57
216591029683	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591029684	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591029685	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591029686	HMMPfam hit to PF01548, Transposase, score 0.00086
216591029687	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 9.4e-37
216591029688	Group II intron - EBS3
216591029689	Group II intron - EBS1
216591029690	Group II intron - IBS1
216591029691	NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B; Region: ALDH_F7_AASADH; cd07130
216591029692	aldehyde dehydrogenase family 7 member; Region: PLN02315
216591029693	tetrameric interface [polypeptide binding]; other site
216591029694	NAD binding site [chemical binding]; other site
216591029695	catalytic residues [active]
216591029696	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 6.7e-131
216591029697	lysine transporter; Provisional; Region: PRK10836
216591029698	HMMPfam hit to PF00324, Amino acid permease, score 5.6e-171
216591029699	12 probable transmembrane helices predicted for BCAM2469 by TMHMM2.0 at aa 34-56, 60-82, 102-124, 139-161, 168-190, 205-227, 254-276, 299-321, 356-375, 379-401, 425-442 and 457-479
216591029700	PS00218 Amino acid permeases signature.
216591029701	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591029702	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591029703	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 5.5e-80
216591029704	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591029705	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591029706	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 6.7e-15
216591029707	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
216591029708	Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502
216591029709	putative active site [active]
216591029710	catalytic site [active]
216591029711	Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins similar to Nuc, an endonuclease from Salmonella typhimurium; Region: PLDc_Nuc_like_unchar1_2; cd09173
216591029712	putative active site [active]
216591029713	catalytic site [active]
216591029714	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 0.055
216591029715	HMMPfam hit to PF00614, Phospholipase D Active site motif, score 7.6
216591029716	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
216591029717	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
216591029718	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
216591029719	HMMPfam hit to PF00455, Bacterial regulatory proteins, deoR family, score 7.6e-36
216591029720	HMMPfam hit to PF08220, DeoR-like helix-turn-helix domain, score 5.7e-18
216591029721	HMMPfam hit to PF08279, HTH domain, score 0.00038
216591029722	Predicted helix-turn-helix motif with score 1484.000, SD 4.24 at aa 20-41, sequence LSVAELVRSLDVSRETVRRDLN
216591029723	PS00894 Bacterial regulatory proteins, deoR family signature.
216591029724	10 probable transmembrane helices predicted for BCAM2475 by TMHMM2.0 at aa 2-24, 34-56, 63-85, 90-112, 121-143, 153-172, 185-204, 214-236, 243-265 and 269-286
216591029725	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 7.5e-11
216591029726	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.2e-08
216591029727	NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD...; Region: NAD_synthase; cd00553
216591029728	NAD synthase [Coenzyme metabolism]; Region: NadE; COG0171
216591029729	homodimer interface [polypeptide binding]; other site
216591029730	NAD binding pocket [chemical binding]; other site
216591029731	ATP binding pocket [chemical binding]; other site
216591029732	Mg binding site [ion binding]; other site
216591029733	active-site loop [active]
216591029734	HMMPfam hit to PF02540, NAD synthase, score 2.3e-75
216591029735	Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]; Region: COG2939
216591029736	Serine carboxypeptidase; Region: Peptidase_S10; cl08270
216591029737	HMMPfam hit to PF00450, Serine carboxypeptidase, score 4.1e-06
216591029738	Activation domain of S53 peptidases; Region: Pro-peptidase_S53; cd11377
216591029739	peptidase domain interface [polypeptide binding]; other site
216591029740	Peptidase domain in the S53 family; Region: Peptidases_S53; cd04056
216591029741	active site
216591029742	catalytic triad [active]
216591029743	calcium binding site [ion binding]; other site
216591029744	HMMPfam hit to PF00082, Subtilase family, score 0.00013
216591029745	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591029746	HMMPfam hit to PF01810, LysE type translocator, score 3e-33
216591029747	4 probable transmembrane helices predicted for BCAM2479 by TMHMM2.0 at aa 7-29, 44-66, 73-92 and 147-169
216591029748	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591029749	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591029750	putative DNA binding site [nucleotide binding]; other site
216591029751	putative Zn2+ binding site [ion binding]; other site
216591029752	AsnC family; Region: AsnC_trans_reg; pfam01037
216591029753	Predicted helix-turn-helix motif with score 1243.000, SD 3.42 at aa 21-42, sequence LPIARLAESVGLSETPCARRLK
216591029754	HMMPfam hit to PF01037, AsnC family, score 1.1e-25
216591029755	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591029756	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591029757	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591029758	dimerization interface [polypeptide binding]; other site
216591029759	HMMPfam hit to PF03466, LysR substrate binding domain, score 4e-29
216591029760	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.7e-13
216591029761	Agmatinase-like family includes proclavaminic acid amidinohydrolase; Region: Agmatinase_PAH; cd11592
216591029762	agmatinase; Region: agmatinase; TIGR01230
216591029763	oligomer interface [polypeptide binding]; other site
216591029764	putative active site [active]
216591029765	Mn binding site [ion binding]; other site
216591029766	HMMPfam hit to PF00491, Arginase family, score 3.2e-58
216591029767	PS00147 Arginase family signature 1.
216591029768	PS00148 Arginase family signature 2.
216591029769	PS01053 Arginase family signature 3.
216591029770	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591029771	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029772	putative substrate translocation pore; other site
216591029773	HMMPfam hit to PF00083, Sugar (and other) transporter score 6.7e-07
216591029774	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.3e-23
216591029775	12 probable transmembrane helices predicted for BCAM2483 by TMHMM2.0 at aa 21-43, 53-75, 84-106, 116-138, 150-172, 187-206, 235-257, 272-294, 301-323, 333-355, 362-384 and 394-416
216591029776	PS00217 Sugar transport proteins signature 2.
216591029777	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222
216591029778	CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_N_terminal_like; cd03312
216591029779	THF binding site; other site
216591029780	CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_C_terminal_like; cd03311
216591029781	substrate binding site [chemical binding]; other site
216591029782	THF binding site; other site
216591029783	zinc-binding site [ion binding]; other site
216591029784	HMMPfam hit to PF01717, Cobalamin-independent synthase, Catalytic, score 4.1e-217
216591029785	HMMPfam hit to PF08267, Cobalamin-independent synthase, N-termina, score 8e-165
216591029786	DNA-binding transcriptional regulator MetR; Provisional; Region: PRK15421
216591029787	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591029788	The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold; Region: PBP2_MetR; cd08441
216591029789	putative dimerization interface [polypeptide binding]; other site
216591029790	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.5e-17
216591029791	Predicted helix-turn-helix motif with score 1743.000, SD 5.12 at aa 17-38, sequence GSLTAAAHALHLTQSALSHTVR
216591029792	PS00044 Bacterial regulatory proteins, lysR family signature.
216591029793	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.2e-34
216591029794	Probable cobalt transporter subunit (CbtA); Region: CbtA; cl02266
216591029795	6 probable transmembrane helices predicted for BCAM2486 by TMHMM2.0 at aa 5-24, 63-85, 98-117, 132-154, 167-186 and 206-228
216591029796	Probable cobalt transporter subunit (CbtB); Region: CbtB; cl09723
216591029797	1 probable transmembrane helix predicted for BCAM2487 by TMHMM2.0 at aa 20-39
216591029798	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
216591029799	catalytic core [active]
216591029800	HMMPfam hit to PF00300, Phosphoglycerate mutase family, score 2e-18
216591029801	PS00387 Inorganic pyrophosphatase signature.
216591029802	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
216591029803	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
216591029804	10 probable transmembrane helices predicted for BCAM2489 by TMHMM2.0 at aa 21-43, 53-75, 95-117, 137-159, 166-183, 198-220, 240-257, 267-284, 412-431 and 504-526
216591029805	HMMPfam hit to PF01384, Phosphate transporter family, score 3.1e-54
216591029806	Uncharacterized protein conserved in bacteria (DUF2086); Region: DUF2086; pfam09859
216591029807	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029808	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591029809	putative substrate translocation pore; other site
216591029810	14 probable transmembrane helices predicted for BCAM2491 by TMHMM2.0 at aa 13-35, 50-72, 81-103, 108-127, 140-162, 167-189, 202-219, 229-248, 260-282, 292-314, 335-354, 358-380, 401-423 and 438-460
216591029811	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.7e-52
216591029812	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029813	phosphonate degradation operons associated HDIG domain protein; Region: Phn-HD; TIGR03276
216591029814	putative phosphonoacetaldehyde dehydrogenase; Region: PhnAcAld_DH; TIGR03250
216591029815	Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like; Region: ALDH_PhpJ; cd07146
216591029816	NAD(P) binding site [chemical binding]; other site
216591029817	catalytic residues [active]
216591029818	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.9e-178
216591029819	PS00070 Aldehyde dehydrogenases cysteine active site.
216591029820	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591029821	phosphonoacetate hydrolase; Region: hydr_PhnA; TIGR02335
216591029822	Type I phosphodiesterase / nucleotide pyrophosphatase; Region: Phosphodiest; pfam01663
216591029823	HMMPfam hit to PF01663, Type I phosphodiesterase / nucleotide py, score 3.7e-13
216591029824	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
216591029825	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591029826	conserved gate region; other site
216591029827	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.00054
216591029828	6 probable transmembrane helices predicted for BCAM2495 by TMHMM2.0 at aa 35-57, 90-112, 125-147, 157-176, 221-243 and 258-280
216591029829	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591029830	2-aminoethylphosphonate transport system permease PhnU; Provisional; Region: PRK15050
216591029831	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591029832	dimer interface [polypeptide binding]; other site
216591029833	conserved gate region; other site
216591029834	putative PBP binding loops; other site
216591029835	ABC-ATPase subunit interface; other site
216591029836	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.6e-18
216591029837	6 probable transmembrane helices predicted for BCAM2496 by TMHMM2.0 at aa 21-43, 76-98, 110-131, 151-173, 213-235 and 255-277
216591029838	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591029839	2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; Region: PhnT; TIGR03258
216591029840	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591029841	Walker A/P-loop; other site
216591029842	ATP binding site [chemical binding]; other site
216591029843	Q-loop/lid; other site
216591029844	ABC transporter signature motif; other site
216591029845	Walker B; other site
216591029846	D-loop; other site
216591029847	H-loop/switch region; other site
216591029848	TOBE domain; Region: TOBE_2; pfam08402
216591029849	HMMPfam hit to PF08402, TOBE domain, score 1.9e-10
216591029850	HMMPfam hit to PF00005, ABC transporter score 3.8e-57
216591029851	PS00211 ABC transporters family signature.
216591029852	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029853	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
216591029854	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
216591029855	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 3.3e-07
216591029856	2-aminoethylphosphonate--pyruvate transaminase; Provisional; Region: PRK13479
216591029857	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591029858	catalytic residue [active]
216591029859	HMMPfam hit to PF00266, Aminotransferase class-V, score 2e-07
216591029860	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029861	D-galactonate transporter; Region: 2A0114; TIGR00893
216591029862	putative substrate translocation pore; other site
216591029863	11 probable transmembrane helices predicted for BCAM2500 by TMHMM2.0 at aa 27-49, 56-78, 98-120, 155-177, 182-201, 256-278, 293-315, 327-349, 355-377, 390-412 and 417-439
216591029864	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.8e-66
216591029865	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029866	shikimate 5-dehydrogenase; Reviewed; Region: PRK12549
216591029867	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
216591029868	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
216591029869	shikimate binding site; other site
216591029870	NAD(P) binding site [chemical binding]; other site
216591029871	HMMPfam hit to PF01488, Shikimate / quinate 5-dehydrogenase, score 1.5e-05
216591029872	HMMPfam hit to PF08501, Shikimate dehydrogenase substrate bind, score 1.3e-25
216591029873	Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466
216591029874	Dehydroquinase class II; Region: DHquinase_II; pfam01220
216591029875	active site
216591029876	trimer interface [polypeptide binding]; other site
216591029877	dimer interface [polypeptide binding]; other site
216591029878	HMMPfam hit to PF01220, Dehydroquinase class II, score 1.2e-79
216591029879	PS01029 Dehydroquinase class II signature.
216591029880	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
216591029881	4-hydroxyphenylpyruvate dioxygenase; Region: 4HPPD; TIGR01263
216591029882	N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS); Region: HPPD_N_like; cd08342
216591029883	dimer interface [polypeptide binding]; other site
216591029884	C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS); Region: HPPD_C_like; cd07250
216591029885	active site
216591029886	Fe binding site [ion binding]; other site
216591029887	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 5.3e-41
216591029888	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/, score 9.8e-08
216591029889	SPRY-associated domain; Region: PRY; cl02686
216591029890	PAS fold; Region: PAS_4; pfam08448
216591029891	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459
216591029892	putative active site [active]
216591029893	heme pocket [chemical binding]; other site
216591029894	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591029895	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591029896	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591029897	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.6e-10
216591029898	PS00041 Bacterial regulatory proteins, araC family signature.
216591029899	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2e-07
216591029900	Predicted helix-turn-helix motif with score 1937.000, SD 5.78 at aa 175-196, sequence LNLKQLAQMAGMSVAQLERYFH
216591029901	HMMPfam hit to PF08448, PAS fold, score 9.2e-17
216591029902	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591029903	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591029904	dimerization interface [polypeptide binding]; other site
216591029905	ligand binding site [chemical binding]; other site
216591029906	HMMPfam hit to PF01094, Receptor family ligand binding region, score 6.7e-48
216591029907	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591029908	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029909	putative substrate translocation pore; other site
216591029910	HMMPfam hit to PF00083, Sugar (and other) transporter score 8e-07
216591029911	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.9e-21
216591029912	11 probable transmembrane helices predicted for BCAM2507 by TMHMM2.0 at aa 32-54, 67-89, 109-131, 160-182, 197-216, 251-273, 288-310, 317-339, 344-366, 379-401 and 406-425
216591029913	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029914	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029915	Predicted membrane protein [Function unknown]; Region: COG2259
216591029916	4 probable transmembrane helices predicted for BCAM2508 by TMHMM2.0 at aa 33-55, 70-92, 97-116 and 131-153
216591029917	HMMPfam hit to PF07681, DoxX, score 6.1e-23
216591029918	Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism]; Region: FucU; COG4154
216591029919	HMMPfam hit to PF05025, RbsD / FucU transport protein family, score 6.1e-16
216591029920	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591029921	galactarate dehydratase; Region: galactar-dH20; TIGR03248
216591029922	Domains similar to fish antifreeze type III protein; Region: SAF_AH_GD; cd11613
216591029923	D-galactarate dehydratase / Altronate hydrolase, C terminus; Region: GD_AH_C; pfam04295
216591029924	HMMPfam hit to PF04295, D-galactarate dehydratase / Altronate hydrol, score 3.5e-205
216591029925	HMMPfam hit to PF04292, D-galactarate dehydratase / Altronate hydrol, score 3.7e-31
216591029926	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
216591029927	5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH); Region: KDGDH; cd00951
216591029928	putative active site [active]
216591029929	catalytic residue [active]
216591029930	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 1.1e-124
216591029931	NAD-dependent aldehyde dehydrogenases [Energy production and conversion]; Region: PutA; COG1012
216591029932	Alpha-Ketoglutaric Semialdehyde Dehydrogenase; Region: ALDH_KGSADH; cd07129
216591029933	dimer interface [polypeptide binding]; other site
216591029934	NADP binding site [chemical binding]; other site
216591029935	catalytic residues [active]
216591029936	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 7e-14
216591029937	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591029938	D-galactonate transporter; Region: 2A0114; TIGR00893
216591029939	putative substrate translocation pore; other site
216591029940	12 probable transmembrane helices predicted for BCAM2515 by TMHMM2.0 at aa 21-40, 55-77, 98-120, 124-146, 159-181, 186-208, 262-284, 299-321, 328-350, 360-382, 391-413 and 423-445
216591029941	HMMPfam hit to PF00083, Sugar (and other) transporter score 8.6e-05
216591029942	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.8e-57
216591029943	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029944	Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the...; Region: S2P-M50_like_2; cd06160
216591029945	Peptidase family M50; Region: Peptidase_M50; pfam02163
216591029946	active site
216591029947	putative substrate binding region [chemical binding]; other site
216591029948	6 probable transmembrane helices predicted for BCAM2516 by TMHMM2.0 at aa 28-50, 63-80, 90-112, 119-141, 161-183 and 212-234
216591029949	HMMPfam hit to PF02163, Peptidase family M50, score 4.7e-09
216591029950	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591029951	Protein of unknown function (DUF2167); Region: DUF2167; pfam09935
216591029952	1 probable transmembrane helix predicted for BCAM2517 by TMHMM2.0 at aa 266-288
216591029953	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591029954	non-specific DNA binding site [nucleotide binding]; other site
216591029955	salt bridge; other site
216591029956	sequence-specific DNA binding site [nucleotide binding]; other site
216591029957	HMMPfam hit to PF01381, Helix-turn-helix, score 2.8e-08
216591029958	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591029959	HMMPfam hit to PF01810, LysE type translocator, score 1.5e-36
216591029960	5 probable transmembrane helices predicted for BCAM2519 by TMHMM2.0 at aa 4-26, 38-60, 70-92, 112-134 and 149-171
216591029961	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591029962	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591029963	putative DNA binding site [nucleotide binding]; other site
216591029964	putative Zn2+ binding site [ion binding]; other site
216591029965	AsnC family; Region: AsnC_trans_reg; pfam01037
216591029966	HMMPfam hit to PF01037, AsnC family, score 6.5e-31
216591029967	dihydroorotase; Validated; Region: PRK09060
216591029968	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591029969	Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family; Region: DHOase_IIb; cd01318
216591029970	active site
216591029971	HMMPfam hit to PF01979, Amidohydrolase family, score 1.3e-13
216591029972	HMMPfam hit to PF07969, Amidohydrolase family, score 0.00045
216591029973	PS00483 Dihydroorotase signature 2.
216591029974	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663
216591029975	Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed...; Region: LbH_gamma_CA; cd00710
216591029976	trimer interface [polypeptide binding]; other site
216591029977	active site
216591029978	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 3.5
216591029979	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 5.1
216591029980	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.3
216591029981	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.03
216591029982	6-pyruvoyl tetrahydropterin synthase; Region: PTPS; pfam01242
216591029983	putative GTP cyclohydrolase; Provisional; Region: PRK13674
216591029984	HMMPfam hit to PF02649, Uncharacterized ACR, COG1469, score 1.1e-08
216591029985	Putative GTPases (G3E family) [General function prediction only]; Region: COG0523
216591029986	CobW/HypB/UreG, nucleotide-binding domain; Region: cobW; pfam02492
216591029987	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; smart00833
216591029988	HMMPfam hit to PF07683, Cobalamin synthesis protein cobW C-terminal, score 3.4e-39
216591029989	HMMPfam hit to PF02492, CobW/HypB/UreG, nucleotide-binding domain, score 1.1e-88
216591029990	PS00017 ATP/GTP-binding site motif A (P-loop).
216591029991	sulfur acquisition oxidoreductase, SfnB family; Region: sulfur_SfnB; TIGR04022
216591029992	Dibenzothiophene (DBT) desulfurization enzyme C; Region: DszC; cd01163
216591029993	Flavin binding site [chemical binding]; other site
216591029994	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 0.0014
216591029995	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 6.7e-25
216591029996	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591029997	dimer interface [polypeptide binding]; other site
216591029998	conserved gate region; other site
216591029999	ABC-ATPase subunit interface; other site
216591030000	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 9.3e-22
216591030001	5 probable transmembrane helices predicted for BCAM2528 by TMHMM2.0 at aa 20-42, 54-76, 86-108, 147-169 and 184-206
216591030002	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591030003	ATP-binding cassette domain of methionine transporter; Region: ABC_MetN_methionine_transporter; cd03258
216591030004	DL-methionine transporter ATP-binding subunit; Provisional; Region: metN; PRK11153
216591030005	Walker A/P-loop; other site
216591030006	ATP binding site [chemical binding]; other site
216591030007	Q-loop/lid; other site
216591030008	ABC transporter signature motif; other site
216591030009	Walker B; other site
216591030010	D-loop; other site
216591030011	H-loop/switch region; other site
216591030012	This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; Region: NIL; smart00930
216591030013	HMMPfam hit to PF00005, ABC transporter score 8e-72
216591030014	PS00211 ABC transporters family signature.
216591030015	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030016	FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; Region: FMN_nitrolo; TIGR03860
216591030017	nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2; Region: Nitrilotriacetate_monoxgenase; cd01095
216591030018	active site
216591030019	non-prolyl cis peptide bond; other site
216591030020	NLPA lipoprotein; Region: Lipoprotein_9; pfam03180
216591030021	HMMPfam hit to PF03180, NLPA lipoprotein, score 1.1e-99
216591030022	2-hydroxycarboxylate transporter family; Region: 2HCT; pfam03390
216591030023	11 probable transmembrane helices predicted for BCAM2532 by TMHMM2.0 at aa 36-58, 62-84, 91-113, 128-145, 158-177, 187-209, 222-244, 304-323, 335-357, 367-389 and 433-452
216591030024	HMMPfam hit to PF03390, Bacterial sodium:citrate symporter, score 1.3e-186
216591030025	Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191
216591030026	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591030027	dimer interface [polypeptide binding]; other site
216591030028	phosphorylation site [posttranslational modification]
216591030029	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591030030	ATP binding site [chemical binding]; other site
216591030031	Mg2+ binding site [ion binding]; other site
216591030032	G-X-G motif; other site
216591030033	2 probable transmembrane helices predicted for BCAM2533 by TMHMM2.0 at aa 15-32 and 309-328
216591030034	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.9e-05
216591030035	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 4.4e-33
216591030036	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
216591030037	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591030038	active site
216591030039	phosphorylation site [posttranslational modification]
216591030040	intermolecular recognition site; other site
216591030041	dimerization interface [polypeptide binding]; other site
216591030042	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591030043	Walker A motif; other site
216591030044	ATP binding site [chemical binding]; other site
216591030045	Walker B motif; other site
216591030046	arginine finger; other site
216591030047	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591030048	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.6e-31
216591030049	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 5.4e-135
216591030050	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591030051	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591030052	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591030053	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 3e-10
216591030054	Predicted helix-turn-helix motif with score 1377.000, SD 3.88 at aa 416-437, sequence GNVADASEALGMPKKTLYHKLR
216591030055	Protein of unknown function (DUF3579); Region: DUF3579; pfam12112
216591030056	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591030057	Novel bacterial esterase that cleaves esters on halogenated cyclic compounds; Region: Esterase_713_like; cl17303
216591030058	catalytic site [active]
216591030059	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 3.1e-09
216591030060	PS00120 Lipases, serine active site.
216591030061	Bacterial Transmembrane Pair family; Region: BTP; pfam05232
216591030062	Bacterial Transmembrane Pair family; Region: BTP; pfam05232
216591030063	HMMPfam hit to PF05232, Bacterial Transmembrane Pair family, score 4.1e-20
216591030064	4 probable transmembrane helices predicted for BCAM2537 by TMHMM2.0 at aa 7-29, 34-56, 77-99 and 106-128
216591030065	HMMPfam hit to PF05232, Bacterial Transmembrane Pair family, score 2.1e-12
216591030066	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591030067	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030068	LysR substrate binding domain; Region: LysR_substrate; pfam03466
216591030069	dimerization interface [polypeptide binding]; other site
216591030070	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.5e-18
216591030071	Predicted helix-turn-helix motif with score 1629.000, SD 4.74 at aa 17-38, sequence GSFSAAARALGRTPSAVSMAIA
216591030072	PS00044 Bacterial regulatory proteins, lysR family signature.
216591030073	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.7e-29
216591030074	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591030075	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591030076	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591030077	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591030078	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 9.5e-07
216591030079	PS00041 Bacterial regulatory proteins, araC family signature.
216591030080	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 7.3e-06
216591030081	11 probable transmembrane helices predicted for BCAM2540 by TMHMM2.0 at aa 21-43, 58-80, 101-123, 138-160, 187-209, 214-233, 339-361, 381-403, 410-431, 446-468 and 481-503
216591030082	1 probable transmembrane helix predicted for BCAM2543 by TMHMM2.0 at aa 13-35
216591030083	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591030084	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030085	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591030086	dimerization interface [polypeptide binding]; other site
216591030087	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.6e-34
216591030088	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.9e-19
216591030089	PS00044 Bacterial regulatory proteins, lysR family signature.
216591030090	Predicted helix-turn-helix motif with score 1143.000, SD 3.08 at aa 40-61, sequence GSIRGAADSINTAPSVITRQIR
216591030091	D-galactonate transporter; Region: 2A0114; TIGR00893
216591030092	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030093	putative substrate translocation pore; other site
216591030094	12 probable transmembrane helices predicted for BCAM2545 by TMHMM2.0 at aa 25-42, 57-79, 99-114, 124-146, 153-175, 185-207, 250-272, 287-306, 319-336, 340-362, 369-391 and 406-425
216591030095	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-52
216591030096	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030097	Uncharacterized conserved protein [Function unknown]; Region: COG5476
216591030098	Protein of unknown function (DUF1485); Region: DUF1485; pfam07364
216591030099	MlrC C-terminus; Region: MlrC_C; pfam07171
216591030100	HMMPfam hit to PF07364, Protein of unknown function (DUF1485), score 8.4e-15
216591030101	HMMPfam hit to PF07171, MlrC C-terminus, score 4.9e-85
216591030102	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591030103	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cd06587
216591030104	active site
216591030105	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 7.3e-07
216591030106	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591030107	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591030108	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 2.7e-07
216591030109	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591030110	HMMPfam hit to PF02321, Outer membrane efflux protein, score 3.4e-52
216591030111	HMMPfam hit to PF02321, Outer membrane efflux protein, score 8.2e-47
216591030112	1 probable transmembrane helix predicted for BCAM2549 by TMHMM2.0 at aa 26-48
216591030113	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030114	AcrB/AcrD/AcrF family; Region: ACR_tran; pfam00873
216591030115	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591030116	12 probable transmembrane helices predicted for BCAM2550 by TMHMM2.0 at aa 12-34, 343-362, 369-391, 396-418, 439-461, 476-498, 550-572, 881-900, 907-929, 934-956, 977-999 and 1014-1036
216591030117	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591030118	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591030119	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591030120	PS00215 Mitochondrial energy transfer proteins signature.
216591030121	HMMPfam hit to PF00529, HlyD family secretion protein, score 1.3e-52
216591030122	1 probable transmembrane helix predicted for BCAM2551 by TMHMM2.0 at aa 12-34
216591030123	Esterases and lipases (includes fungal lipases, cholinesterases, etc.)  These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cd00312
216591030124	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591030125	substrate binding pocket [chemical binding]; other site
216591030126	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 7.1e-77
216591030127	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591030128	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030129	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
216591030130	putative effector binding pocket; other site
216591030131	putative dimerization interface [polypeptide binding]; other site
216591030132	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.5e-16
216591030133	PS00044 Bacterial regulatory proteins, lysR family signature.
216591030134	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.7e-48
216591030135	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591030136	Purine nucleoside permease (NUP); Region: NUP; pfam06516
216591030137	HMMPfam hit to PF06516, Purine nucleoside permease (NUP), score 7.7e-203
216591030138	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030139	LysE type translocator; Region: LysE; cl00565
216591030140	HMMPfam hit to PF01810, LysE type translocator, score 4.1e-05
216591030141	5 probable transmembrane helices predicted for BCAM2557 by TMHMM2.0 at aa 4-26, 47-69, 111-133, 140-162 and 172-194
216591030142	selenophosphate synthetase; Provisional; Region: PRK00943
216591030143	Selenophosphate synthetase  (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The...; Region: SelD; cd02195
216591030144	dimerization interface [polypeptide binding]; other site
216591030145	putative ATP binding site [chemical binding]; other site
216591030146	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 3.7e-21
216591030147	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030148	HMMPfam hit to PF00586, AIR synthase related protein, N-terminal dom, score 3.4e-07
216591030149	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030150	phosphonate utilization associated putative membrane protein; Region: phn_DUF6; TIGR03340
216591030151	9 probable transmembrane helices predicted for BCAM2559 by TMHMM2.0 at aa 4-23, 30-52, 57-76, 89-108, 113-132, 139-158, 173-192, 205-227 and 232-254
216591030152	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 7.6e-08
216591030153	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591030154	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591030155	DNA-binding site [nucleotide binding]; DNA binding site
216591030156	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591030157	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591030158	homodimer interface [polypeptide binding]; other site
216591030159	catalytic residue [active]
216591030160	HMMPfam hit to PF00155, Aminotransferase class I and II, score 2.8e-12
216591030161	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030162	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 8e-14
216591030163	4-aminobutyrate aminotransferase; Provisional; Region: PRK06777
216591030164	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591030165	inhibitor-cofactor binding pocket; inhibition site
216591030166	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591030167	catalytic residue [active]
216591030168	PS00636 Nt-dnaJ domain signature.
216591030169	HMMPfam hit to PF00202, Aminotransferase class-III, score 7.3e-149
216591030170	HMMPfam hit to PF00155, Aminotransferase class I and II, score 8.9e-05
216591030171	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591030172	succinate-semialdehyde dehydrogenase I; Provisional; Region: gabD; PRK11241
216591030173	Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103
216591030174	tetramerization interface [polypeptide binding]; other site
216591030175	NAD(P) binding site [chemical binding]; other site
216591030176	catalytic residues [active]
216591030177	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 2e-234
216591030178	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591030179	PS00070 Aldehyde dehydrogenases cysteine active site.
216591030180	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591030181	PAS domain; Region: PAS_9; pfam13426
216591030182	putative active site [active]
216591030183	heme pocket [chemical binding]; other site
216591030184	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
216591030185	dimerization interface [polypeptide binding]; other site
216591030186	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
216591030187	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591030188	dimer interface [polypeptide binding]; other site
216591030189	putative CheW interface [polypeptide binding]; other site
216591030190	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 2.9e-93
216591030191	HMMPfam hit to PF00672, HAMP domain, score 1.1e-06
216591030192	2 probable transmembrane helices predicted for BCAM2563 by TMHMM2.0 at aa 206-228 and 232-254
216591030193	HMMPfam hit to PF08447, PAS fold, score 8.3e-19
216591030194	HMMPfam hit to PF00989, PAS fold, score 9.8e-05
216591030195	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591030196	PAS domain; Region: PAS_9; pfam13426
216591030197	putative active site [active]
216591030198	heme pocket [chemical binding]; other site
216591030199	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cl01054
216591030200	dimerization interface [polypeptide binding]; other site
216591030201	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
216591030202	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591030203	dimer interface [polypeptide binding]; other site
216591030204	putative CheW interface [polypeptide binding]; other site
216591030205	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 4.8e-95
216591030206	HMMPfam hit to PF00672, HAMP domain, score 2.2e-07
216591030207	PS00217 Sugar transport proteins signature 2.
216591030208	2 probable transmembrane helices predicted for BCAM2564 by TMHMM2.0 at aa 169-186 and 190-212
216591030209	HMMPfam hit to PF08447, PAS fold, score 2.1e-13
216591030210	Methyltransferase domain; Region: Methyltransf_31; pfam13847
216591030211	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591030212	S-adenosylmethionine binding site [chemical binding]; other site
216591030213	HMMPfam hit to PF08241, Methyltransferase domain, score 7.2e-11
216591030214	HMMPfam hit to PF08242, Methyltransferase domain, score 9.8e-12
216591030215	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591030216	Coenzyme A binding pocket [chemical binding]; other site
216591030217	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.7e-11
216591030218	Uncharacterized conserved protein [Function unknown]; Region: COG1683
216591030219	HMMPfam hit to PF04463, Protein of unknown function (DUF523), score 5.7e-62
216591030220	beta-ketoadipyl CoA thiolase; Validated; Region: PRK09050
216591030221	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591030222	dimer interface [polypeptide binding]; other site
216591030223	active site
216591030224	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 1.3e-60
216591030225	PS00099 Thiolases active site.
216591030226	PS00737 Thiolases signature 2.
216591030227	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 1.1e-99
216591030228	PS00098 Thiolases acyl-enzyme intermediate signature.
216591030229	beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Region: pcaR_pcaU; TIGR02431
216591030230	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591030231	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591030232	Predicted helix-turn-helix motif with score 1014.000, SD 2.64 at aa 67-88, sequence QTLTEVASATGLTRAGARRILL
216591030233	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 1.1e-45
216591030234	Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like subfamily; subgroup includes Pseudomonas aeruginosa AotO; Region: M14_PaAOTO_like; cd06250
216591030235	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
216591030236	active site
216591030237	Zn binding site [ion binding]; other site
216591030238	HMMPfam hit to PF04952, Succinylglutamate desuccinylase / Aspartoac, score 1.5e-07
216591030239	ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional; Region: PRK15010
216591030240	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591030241	substrate binding pocket [chemical binding]; other site
216591030242	membrane-bound complex binding site; other site
216591030243	hinge residues; other site
216591030244	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.6e-72
216591030245	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591030246	putative DNA-binding transcriptional regulator; Provisional; Region: PRK09791
216591030247	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030248	LysR substrate binding domain; Region: LysR_substrate; pfam03466
216591030249	dimerization interface [polypeptide binding]; other site
216591030250	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-20
216591030251	Predicted helix-turn-helix motif with score 1354.000, SD 3.80 at aa 18-39, sequence GSLRAAARALDLAQSGVTQQLQ
216591030252	PS00044 Bacterial regulatory proteins, lysR family signature.
216591030253	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.1e-22
216591030254	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030255	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591030256	putative substrate translocation pore; other site
216591030257	HMMPfam hit to PF00083, Sugar (and other) transporter score 9e-08
216591030258	10 probable transmembrane helices predicted for BCAM2573 by TMHMM2.0 at aa 35-57, 72-94, 103-125, 203-222, 254-276, 289-311, 323-340, 345-364, 385-407 and 417-434
216591030259	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.6e-19
216591030260	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030261	Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473
216591030262	M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666
216591030263	metal binding site [ion binding]; metal-binding site
216591030264	putative dimer interface [polypeptide binding]; other site
216591030265	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 2.2e-64
216591030266	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 8.4e-10
216591030267	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591030268	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030269	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591030270	putative effector binding pocket; other site
216591030271	dimerization interface [polypeptide binding]; other site
216591030272	HMMPfam hit to PF03466, LysR substrate binding domain, score 6e-45
216591030273	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.7e-13
216591030274	Predicted helix-turn-helix motif with score 1134.000, SD 3.05 at aa 11-32, sequence GSMTAGAVALGSTPSVLSRAIT
216591030275	Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Region: GATase1_Hsp31_like; cd03141
216591030276	Putative intracellular protease/amidase [General function prediction only]; Region: ThiJ; COG0693
216591030277	potential catalytic triad [active]
216591030278	conserved cys residue [active]
216591030279	PS01095 Chitinases family 18 active site.
216591030280	HMMPfam hit to PF01965, DJ-1/PfpI family, score 2.2e-12
216591030281	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591030282	Putative intracellular protease/amidase [General function prediction only]; Region: ThiJ; COG0693
216591030283	Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Region: GATase1_Hsp31_like; cd03141
216591030284	potential catalytic triad [active]
216591030285	conserved cys residue [active]
216591030286	1 probable transmembrane helix predicted for BCAM2577 by TMHMM2.0 at aa 12-34
216591030287	HMMPfam hit to PF01965, DJ-1/PfpI family, score 6e-18
216591030288	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
216591030289	classical (c) SDRs; Region: SDR_c; cd05233
216591030290	NAD(P) binding site [chemical binding]; other site
216591030291	active site
216591030292	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.5e-16
216591030293	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
216591030294	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591030295	active site
216591030296	HMMPfam hit to PF04909, Amidohydrolase, score 8.3e-47
216591030297	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591030298	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030299	putative substrate translocation pore; other site
216591030300	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030301	12 probable transmembrane helices predicted for BCAM2580 by TMHMM2.0 at aa 19-36, 56-75, 88-107, 113-135, 148-170, 180-202, 248-270, 280-302, 314-332, 336-358, 370-392 and 402-424
216591030302	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.7e-41
216591030303	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030304	H+ Antiporter protein; Region: 2A0121; TIGR00900
216591030305	HMMPfam hit to PF05977, Bacterial protein of unknown function (DUF89, score 0.00071
216591030306	9 probable transmembrane helices predicted for BCAM2581 by TMHMM2.0 at aa 52-74, 87-109, 181-198, 229-248, 263-285, 292-311, 316-338, 350-372 and 382-399
216591030307	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030308	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.4e-16
216591030309	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030310	benzoate transport; Region: 2A0115; TIGR00895
216591030311	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030312	putative substrate translocation pore; other site
216591030313	HMMPfam hit to PF00083, Sugar (and other) transporter score 3.7e-06
216591030314	12 probable transmembrane helices predicted for BCAM2582 by TMHMM2.0 at aa 35-57, 67-89, 98-116, 121-143, 156-178, 188-207, 238-260, 275-297, 309-331, 335-357, 369-391 and 395-417
216591030315	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.2e-47
216591030316	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
216591030317	Amidohydrolase; Region: Amidohydro_2; pfam04909
216591030318	HMMPfam hit to PF04909, Amidohydrolase, score 6.6e-47
216591030319	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591030320	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591030321	trimer interface [polypeptide binding]; other site
216591030322	eyelet of channel; other site
216591030323	HMMPfam hit to PF00267, Gram-negative porin, score 0.00084
216591030324	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591030325	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030326	putative substrate translocation pore; other site
216591030327	12 probable transmembrane helices predicted for BCAM2585 by TMHMM2.0 at aa 59-81, 94-116, 123-145, 149-171, 184-206, 216-238, 284-306, 316-338, 351-373, 378-400, 405-427 and 437-459
216591030328	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.4e-46
216591030329	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030330	SMP-30/Gluconolaconase/LRE-like region; Region: SGL; pfam08450
216591030331	Strictosidine synthase; Region: Str_synth; pfam03088
216591030332	HMMPfam hit to PF08450, SMP-30/Gluconolaconase/LRE-like region, score 1.6e-13
216591030333	Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Region: SerA; COG0111
216591030334	Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; Region: FDH_GDH_like; cl17240
216591030335	NAD binding site [chemical binding]; other site
216591030336	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 4.9e-17
216591030337	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 1.8e-81
216591030338	PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
216591030339	PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
216591030340	hypothetical protein; Validated; Region: PRK06201
216591030341	Demethylmenaquinone methyltransferase [Coenzyme metabolism]; Region: MenG; COG0684
216591030342	HMMPfam hit to PF03737, Demethylmenaquinone methyltransferase, score 9.9e-38
216591030343	PS00216 Sugar transport proteins signature 1.
216591030344	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591030345	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591030346	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591030347	Predicted helix-turn-helix motif with score 1340.000, SD 3.75 at aa 34-55, sequence QSLATLSQASGMHKTTVYRLMN
216591030348	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591030349	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030350	putative substrate translocation pore; other site
216591030351	HMMPfam hit to PF00083, Sugar (and other) transporter score 8.1e-08
216591030352	12 probable transmembrane helices predicted for BCAM2590 by TMHMM2.0 at aa 5-27, 37-59, 80-102, 112-134, 146-165, 180-199, 247-266, 271-293, 300-319, 329-351, 364-386 and 390-412
216591030353	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1e-23
216591030354	PS00190 Cytochrome c family heme-binding site signature.
216591030355	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030356	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030357	PS00216 Sugar transport proteins signature 1.
216591030358	Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]; Region: CypX; COG2124
216591030359	Cytochrome P450; Region: p450; cl12078
216591030360	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
216591030361	Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal  ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur; Region: PDR_like; cd06185
216591030362	FMN-binding pocket [chemical binding]; other site
216591030363	flavin binding motif; other site
216591030364	phosphate binding motif [ion binding]; other site
216591030365	beta-alpha-beta structure motif; other site
216591030366	NAD binding pocket [chemical binding]; other site
216591030367	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591030368	catalytic loop [active]
216591030369	iron binding site [ion binding]; other site
216591030370	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 8e-21
216591030371	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591030372	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 9.5e-06
216591030373	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 1.1e-05
216591030374	HMMPfam hit to PF08021, Siderophore-interacting FAD-binding dom, score 0.00078
216591030375	HMMPfam hit to PF00067, Cytochrome P450, score 1.7e-07
216591030376	PS00086 Cytochrome P450 cysteine heme-iron ligand signature.
216591030377	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591030378	IclR helix-turn-helix domain; Region: HTH_IclR; cl17605
216591030379	Predicted helix-turn-helix motif with score 1052.000, SD 2.77 at aa 12-33, sequence ATLTALAARLDENPAKVHRYLA
216591030380	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 8.1e-05
216591030381	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591030382	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591030383	HMMPfam hit to PF02178, AT hook motif, score 0.02
216591030384	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 4.1e-15
216591030385	Yhdh putative quinone oxidoreductases; Region: MDR_yhdh; cd08288
216591030386	putative quinone oxidoreductase, YhdH/YhfP family; Region: oxido_YhdH; TIGR02823
216591030387	NADP binding site [chemical binding]; other site
216591030388	dimer interface [polypeptide binding]; other site
216591030389	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.1e-11
216591030390	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030391	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 4.8e-13
216591030392	uncharacterized peroxidase-related enzyme; Region: peroxid_rel; TIGR01926
216591030393	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
216591030394	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 1.7e-08
216591030395	Beta-lactamase; Region: Beta-lactamase; pfam00144
216591030396	Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680
216591030397	HMMPfam hit to PF00144, Beta-lactamase, score 3.1e-42
216591030398	1 probable transmembrane helix predicted for BCAM2596 by TMHMM2.0 at aa 9-31
216591030399	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591030400	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030401	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591030402	dimerization interface [polypeptide binding]; other site
216591030403	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.2e-13
216591030404	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591030405	Predicted helix-turn-helix motif with score 1446.000, SD 4.11 at aa 21-42, sequence GSITKAAAHLGKDRSTVSELLE
216591030406	HMMPfam hit to PF03466, LysR substrate binding domain, score 2e-10
216591030407	short chain dehydrogenase; Provisional; Region: PRK06180
216591030408	17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374
216591030409	NADP binding site [chemical binding]; other site
216591030410	active site
216591030411	steroid binding site; other site
216591030412	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00023
216591030413	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.5e-24
216591030414	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591030415	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591030416	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 5.1e-13
216591030417	Predicted helix-turn-helix motif with score 1181.000, SD 3.21 at aa 38-59, sequence ATTARIAKLAGVAEGTVFTYFE
216591030418	glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722
216591030419	Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479
216591030420	Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781
216591030421	HMMPfam hit to PF00479, Glucose-6-phosphate dehydrogenase, NAD bindi, score 4.6e-82
216591030422	PS00069 Glucose-6-phosphate dehydrogenase active site.
216591030423	HMMPfam hit to PF02781, Glucose-6-phosphate dehydrogenase, C-termina, score 1.5e-149
216591030424	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591030425	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030426	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591030427	dimerization interface [polypeptide binding]; other site
216591030428	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.4e-43
216591030429	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.8e-18
216591030430	Predicted helix-turn-helix motif with score 1394.000, SD 3.93 at aa 18-39, sequence GSITAAAQQLDLTVSATSRTLA
216591030431	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591030432	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030433	putative substrate translocation pore; other site
216591030434	12 probable transmembrane helices predicted for BCAM2602 by TMHMM2.0 at aa 7-29, 39-61, 68-90, 94-116, 128-150, 160-182, 202-224, 237-259, 272-289, 294-316, 336-358 and 363-382
216591030435	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.6e-50
216591030436	luciferase-type oxidoreductase, BA3436 family; Region: lucif_BA3436; TIGR03571
216591030437	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892
216591030438	N5,N10-methylenetetrahydromethanopterin reductase (Mer) catalyzes the reduction of N5,N10-methylenetetrahydromethanopterin with reduced coenzyme F420 to N5-methyltetrahydromethanopterin and oxidized coenzyme F420; Region: Tetrahydromethanopterin_reductase; cd01097
216591030439	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 9.9e-05
216591030440	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591030441	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591030442	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591030443	active site
216591030444	catalytic tetrad [active]
216591030445	HMMPfam hit to PF00248, Aldo/keto reductase family, score 1.3e-95
216591030446	PS00798 Aldo/keto reductase family signature 1.
216591030447	PS00062 Aldo/keto reductase family signature 2.
216591030448	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591030449	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591030450	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591030451	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591030452	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030453	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591030454	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
216591030455	Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933
216591030456	FMN binding site [chemical binding]; other site
216591030457	active site
216591030458	substrate binding site [chemical binding]; other site
216591030459	catalytic residue [active]
216591030460	HMMPfam hit to PF00724, NADH:flavin oxidoreductase / NADH oxidas, score 1.1e-88
216591030461	Putative cyclase; Region: Cyclase; pfam04199
216591030462	HMMPfam hit to PF04199, Putative cyclase, score 0.002
216591030463	Protein of unknown function (DUF3455); Region: DUF3455; pfam11937
216591030464	Methyltransferase domain; Region: Methyltransf_24; pfam13578
216591030465	HMMPfam hit to PF01596, O-methyltransferase, score 3e-06
216591030466	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591030467	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591030468	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 6.5e-15
216591030469	Predicted helix-turn-helix motif with score 1825.000, SD 5.40 at aa 43-64, sequence FTMARVAERAGVSVGSLYQYFP
216591030470	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
216591030471	HMMPfam hit to PF00860, Permease family, score 3.4e-78
216591030472	12 probable transmembrane helices predicted for BCAM2612 by TMHMM2.0 at aa 42-64, 69-91, 96-115, 120-142, 149-171, 186-208, 215-237, 264-283, 348-370, 374-391, 404-426 and 441-460
216591030473	HMMPfam hit to PF00916, Sulfate transporter family, score 0.00045
216591030474	PS00211 ABC transporters family signature.
216591030475	Uncharacterized protein family (UPF0093); Region: UPF0093; cl00863
216591030476	4 probable transmembrane helices predicted for BCAM2614 by TMHMM2.0 at aa 11-33, 46-68, 72-94 and 107-129
216591030477	PS00213 Lipocalin signature.
216591030478	Domain of unknown function (DUF3817); Region: DUF3817; pfam12823
216591030479	3 probable transmembrane helices predicted for BCAM2615 by TMHMM2.0 at aa 15-33, 40-62 and 77-96
216591030480	transcriptional activator FtrA; Provisional; Region: ftrA; PRK09393
216591030481	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591030482	conserved cys residue [active]
216591030483	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591030484	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591030485	HMMPfam hit to PF01965, DJ-1/PfpI family, score 1.3e-19
216591030486	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 3.2e-09
216591030487	Predicted helix-turn-helix motif with score 1467.000, SD 4.18 at aa 224-245, sequence LTLDAIARKASTSVRTLTRRFQ
216591030488	PS00041 Bacterial regulatory proteins, araC family signature.
216591030489	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 1.2e-07
216591030490	Predicted helix-turn-helix motif with score 1467.000, SD 4.18 at aa 289-310, sequence AFRERFARIVGTSPQRYRQAFR
216591030491	putative DNA-binding transcriptional regulator; Provisional; Region: PRK09791
216591030492	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030493	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591030494	dimerization interface [polypeptide binding]; other site
216591030495	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6e-16
216591030496	Predicted helix-turn-helix motif with score 1778.000, SD 5.24 at aa 23-44, sequence KSLRAAARELGVTQPAITHTIR
216591030497	PS00044 Bacterial regulatory proteins, lysR family signature.
216591030498	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-30
216591030499	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591030500	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591030501	substrate binding pocket [chemical binding]; other site
216591030502	membrane-bound complex binding site; other site
216591030503	hinge residues; other site
216591030504	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 8.1e-91
216591030505	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591030506	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030507	Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like subfamily; subgroup includes Pseudomonas aeruginosa AotO; Region: M14_PaAOTO_like; cd06250
216591030508	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
216591030509	active site
216591030510	Zn binding site [ion binding]; other site
216591030511	HMMPfam hit to PF04952, Succinylglutamate desuccinylase / Aspartoac, score 1.4e-07
216591030512	ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]; Region: NlpA; COG1464
216591030513	NLPA lipoprotein; Region: Lipoprotein_9; pfam03180
216591030514	HMMPfam hit to PF03180, NLPA lipoprotein, score 2.1e-123
216591030515	CDS contains a nonsense mutation (opal) after codon 62. Similar to Burkholderia cenocepacia HI2424 porin, gram-negative type precursor UniProt:A0B3D4 (EMBL:CP000459 (385 aa) fasta scores: E()=5.1e-142, 95.844% id in 385 aa
216591030516	HMMPfam hit to PF00267, Gram-negative porin, score 2.6e-05
216591030517	Protein of unknown function (DUF2866); Region: DUF2866; pfam11065
216591030518	2 probable transmembrane helices predicted for BCAM2624 by TMHMM2.0 at aa 42-61 and 65-82
216591030519	TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; Region: TonB-hemlactrns; TIGR01786
216591030520	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591030521	N-terminal plug; other site
216591030522	ligand-binding site [chemical binding]; other site
216591030523	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 8.5e-28
216591030524	HMMPfam hit to PF00593, TonB dependent receptor, score 9.1e-33
216591030525	Putative heme degradation protein [Inorganic ion transport and metabolism]; Region: HemS; COG3720
216591030526	Haemin-degrading HemS.ChuX domain; Region: HemS; pfam05171
216591030527	Haemin-degrading HemS.ChuX domain; Region: HemS; pfam05171
216591030528	HMMPfam hit to PF05171, Haemin-degrading family, score 1e-118
216591030529	Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262
216591030530	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
216591030531	intersubunit interface [polypeptide binding]; other site
216591030532	1 probable transmembrane helix predicted for BCAM2628 by TMHMM2.0 at aa 13-35
216591030533	HMMPfam hit to PF01497, Periplasmic binding protein, score 1.1e-40
216591030534	ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]; Region: FepD; COG0609
216591030535	ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]; Region: FepD; COG0609
216591030536	putative PBP binding regions; other site
216591030537	ABC-ATPase subunit  interface; other site
216591030538	8 probable transmembrane helices predicted for BCAM2629 by TMHMM2.0 at aa 31-53, 84-106, 144-166, 173-195, 215-237, 269-291, 306-328 and 335-354
216591030539	HMMPfam hit to PF01032, FecCD transport family, score 5.8e-95
216591030540	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030541	hemin importer ATP-binding subunit; Provisional; Region: hmuV; PRK13547
216591030542	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
216591030543	Walker A/P-loop; other site
216591030544	ATP binding site [chemical binding]; other site
216591030545	Q-loop/lid; other site
216591030546	ABC transporter signature motif; other site
216591030547	Walker B; other site
216591030548	D-loop; other site
216591030549	H-loop/switch region; other site
216591030550	HMMPfam hit to PF00005, ABC transporter score 6.7e-39
216591030551	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030552	PS00211 ABC transporters family signature.
216591030553	Predicted membrane protein [Function unknown]; Region: COG2860
216591030554	UPF0126 domain; Region: UPF0126; pfam03458
216591030555	UPF0126 domain; Region: UPF0126; pfam03458
216591030556	7 probable transmembrane helices predicted for BCAM2631 by TMHMM2.0 at aa 4-21, 28-45, 55-77, 86-108, 112-134, 146-165 and 169-191
216591030557	HMMPfam hit to PF03458, UPF0126 domain, score 2.1e-25
216591030558	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030559	HMMPfam hit to PF03458, UPF0126 domain, score 9.3e-28
216591030560	Transglycosylase; Region: Transgly; pfam00912
216591030561	penicillin-binding protein, 1A family; Region: PBP_1a_fam; TIGR02074
216591030562	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
216591030563	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 3.5e-32
216591030564	HMMPfam hit to PF00912, Transglycosylase, score 1.3e-82
216591030565	1 probable transmembrane helix predicted for BCAM2632 by TMHMM2.0 at aa 28-47
216591030566	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030567	Aminoglycoside/hydroxyurea antibiotic resistance kinase; Region: APH_6_hur; cl17810
216591030568	HMMPfam hit to PF04655, Aminoglycoside/hydroxyurea antibiotic resis, score 6.6e-83
216591030569	Adenylate kinase and related kinases [Nucleotide transport and metabolism]; Region: Adk; COG0563
216591030570	Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II; Region: CPT; cl17391
216591030571	P-loop motif; other site
216591030572	ATP binding site [chemical binding]; other site
216591030573	Chloramphenicol (Cm) binding site [chemical binding]; other site
216591030574	catalytic residue [active]
216591030575	HMMPfam hit to PF07931, Chloramphenicol phosphotransferase-like prot, score 3.1e-21
216591030576	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030577	putative transposase OrfB; Reviewed; Region: PHA02517
216591030578	HTH-like domain; Region: HTH_21; pfam13276
216591030579	Integrase core domain; Region: rve; pfam00665
216591030580	Integrase core domain; Region: rve_2; pfam13333
216591030581	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591030582	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591030583	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591030584	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591030585	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591030586	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591030587	hypothetical protein; Provisional; Region: PRK11171
216591030588	Cupin domain; Region: Cupin_2; pfam07883
216591030589	Cupin domain; Region: Cupin_2; pfam07883
216591030590	HMMPfam hit to PF07883, Cupin domain, score 1.3e-06
216591030591	HMMPfam hit to PF05899, Protein of unknown function (DUF861), score 1.3e-22
216591030592	HMMPfam hit to PF07883, Cupin domain, score 2.9e-15
216591030593	HMMPfam hit to PF05433, Rickettsia 17 kDa surface antigen, score 0.00077
216591030594	PS00095 C-5 cytosine-specific DNA methylases C-terminal signature.
216591030595	HMMPfam hit to PF05433, Rickettsia 17 kDa surface antigen, score 1.8e-06
216591030596	2 probable transmembrane helices predicted for BCAM2639 by TMHMM2.0 at aa 5-27 and 42-64
216591030597	Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]; Region: STE14; COG2020
216591030598	HMMPfam hit to PF04140, Isoprenylcysteine carboxyl methyltransferase, score 4.2e-10
216591030599	6 probable transmembrane helices predicted for BCAM2640 by TMHMM2.0 at aa 7-29, 39-58, 71-90, 105-124, 131-150 and 165-187
216591030600	2 probable transmembrane helices predicted for BCAM2640A by TMHMM2.0 at aa 23-45 and 50-72
216591030601	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030602	HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life; Region: HINT_subgroup; cd01277
216591030603	HIT family signature motif; other site
216591030604	catalytic residue [active]
216591030605	HMMPfam hit to PF01230, HIT domain, score 5.2e-36
216591030606	Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680
216591030607	Beta-lactamase; Region: Beta-lactamase; pfam00144
216591030608	1 probable transmembrane helix predicted for BCAM2643 by TMHMM2.0 at aa 12-34
216591030609	HMMPfam hit to PF00144, Beta-lactamase, score 4.6e-31
216591030610	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591030611	GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_N_2; cd03047
216591030612	putative C-terminal domain interface [polypeptide binding]; other site
216591030613	putative GSH binding site (G-site) [chemical binding]; other site
216591030614	putative dimer interface [polypeptide binding]; other site
216591030615	C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases; Region: GST_C_2; cd03180
216591030616	putative N-terminal domain interface [polypeptide binding]; other site
216591030617	putative dimer interface [polypeptide binding]; other site
216591030618	putative substrate binding pocket (H-site) [chemical binding]; other site
216591030619	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 4.8e-09
216591030620	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591030621	Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]; Region: COG1090
216591030622	NAD(P) binding site [chemical binding]; other site
216591030623	active site
216591030624	HMMPfam hit to PF08338, Domain of unknown function (DUF1731), score 5.7e-22
216591030625	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 0.0008
216591030626	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.8e-08
216591030627	HMMPfam hit to PF07993, Male sterility protein, score 0.00076
216591030628	4 probable transmembrane helices predicted for BCAM2645 by TMHMM2.0 at aa 53-72, 76-98, 111-133 and 148-165
216591030629	Protein of unknown function, DUF393; Region: DUF393; pfam04134
216591030630	4 probable transmembrane helices predicted for BCAM2646 by TMHMM2.0 at aa 148-170, 200-222, 234-253 and 257-279
216591030631	Predicted integral membrane protein (DUF2269); Region: DUF2269; pfam10027
216591030632	4 probable transmembrane helices predicted for BCAM2647 by TMHMM2.0 at aa 10-32, 53-75, 80-102 and 136-153
216591030633	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030634	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs; Region: NDUFA9_like_SDR_a; cd05271
216591030635	NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370
216591030636	putative NAD(P) binding site [chemical binding]; other site
216591030637	active site
216591030638	DoxX-like family; Region: DoxX_3; pfam13781
216591030639	4 probable transmembrane helices predicted for BCAM2648 by TMHMM2.0 at aa 251-273, 326-348, 363-385 and 392-414
216591030640	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 0.0031
216591030641	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 1.2e-06
216591030642	HMMPfam hit to PF07993, Male sterility protein, score 0.0012
216591030643	Predicted transcriptional regulators [Transcription]; Region: COG1510
216591030644	MarR family; Region: MarR_2; pfam12802
216591030645	trans-2-enoyl-CoA reductase; Provisional; Region: PRK13656
216591030646	NAD(P)H binding domain of trans-2-enoyl-CoA reductase; Region: Eno-Rase_NADH_b; pfam12242
216591030647	Trans-2-enoyl-CoA reductase catalytic region; Region: Enoyl_reductase; pfam12241
216591030648	Enoyl reductase FAD binding domain; Region: Eno-Rase_FAD_bd; pfam07055
216591030649	HMMPfam hit to PF07055, Short-chain alcohol dehydrogenase, score 6.3e-297
216591030650	short chain dehydrogenase; Validated; Region: PRK08264
216591030651	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591030652	NAD(P) binding site [chemical binding]; other site
216591030653	active site
216591030654	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.6e-15
216591030655	PS00061 Short-chain dehydrogenases/reductases family signature.
216591030656	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591030657	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591030658	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.2e-16
216591030659	Predicted helix-turn-helix motif with score 1236.000, SD 3.40 at aa 31-52, sequence VGLTELMKEAGFTQGGFYNHFK
216591030660	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
216591030661	1 probable transmembrane helix predicted for BCAM2653 by TMHMM2.0 at aa 7-25
216591030662	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
216591030663	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4e-14
216591030664	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030665	PS00101 Hexapeptide-repeat containing-transferases signature.
216591030666	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591030667	dimerization interface [polypeptide binding]; other site
216591030668	putative DNA binding site [nucleotide binding]; other site
216591030669	putative Zn2+ binding site [ion binding]; other site
216591030670	HMMPfam hit to PF01022, Bacterial regulatory protein, arsR family, score 2.2e-06
216591030671	Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; Region: SRPBCC_CalC_Aha1-like_3; cd08896
216591030672	putative hydrophobic ligand binding site [chemical binding]; other site
216591030673	HMMPfam hit to PF08327, Activator of Hsp90 ATPase homolog 1-like pro, score 2.8e-30
216591030674	Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; Region: SRPBCC_CalC_Aha1-like_2; cd08895
216591030675	putative hydrophobic ligand binding site [chemical binding]; other site
216591030676	HMMPfam hit to PF08327, Activator of Hsp90 ATPase homolog 1-like pro, score 2.3e-12
216591030677	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
216591030678	Amidohydrolase; Region: Amidohydro_2; pfam04909
216591030679	HMMPfam hit to PF04909, Amidohydrolase, score 9.2e-46
216591030680	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591030681	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030682	putative substrate translocation pore; other site
216591030683	12 probable transmembrane helices predicted for BCAM2659 by TMHMM2.0 at aa 30-52, 67-89, 96-115, 125-147, 154-176, 191-210, 252-274, 289-308, 315-337, 341-363, 375-397 and 407-429
216591030684	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.6e-48
216591030685	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591030686	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591030687	HMMPfam hit to PF02515, CoA-transferase family III, score 1.1e-47
216591030688	3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; Region: DRE_TIM_HMGL; cd07938
216591030689	active site
216591030690	catalytic residues [active]
216591030691	metal binding site [ion binding]; metal-binding site
216591030692	HMMPfam hit to PF00682, HMGL-like, score 1.4e-39
216591030693	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591030694	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591030695	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591030696	Predicted helix-turn-helix motif with score 1600.000, SD 4.64 at aa 44-65, sequence LSLAELSRRTGLYKSTILRLLA
216591030697	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 4.2e-12
216591030698	DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1; Region: DsbA_HCCA_Iso; cd03022
216591030699	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
216591030700	putative catalytic residue [active]
216591030701	HMMPfam hit to PF01323, DSBA-like thioredoxin domain, score 1.2e-15
216591030702	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591030703	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030704	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591030705	putative effector binding pocket; other site
216591030706	dimerization interface [polypeptide binding]; other site
216591030707	HMMPfam hit to PF03466, LysR substrate binding domain, score 1e-33
216591030708	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.4e-21
216591030709	PS00044 Bacterial regulatory proteins, lysR family signature.
216591030710	Predicted helix-turn-helix motif with score 1792.000, SD 5.29 at aa 21-42, sequence GSLSAAAVQLHTTQPTISRRLQ
216591030711	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030712	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591030713	10 probable transmembrane helices predicted for BCAM2665 by TMHMM2.0 at aa 32-54, 69-91, 104-126, 156-178, 237-259, 269-291, 303-320, 330-352, 365-387 and 391-408
216591030714	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.8e-32
216591030715	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cl00474
216591030716	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
216591030717	active site
216591030718	4 probable transmembrane helices predicted for BCAM2666 by TMHMM2.0 at aa 37-59, 72-94, 131-153 and 166-188
216591030719	HMMPfam hit to PF01569, PAP2 superfamily, score 4e-10
216591030720	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591030721	Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of  glutathione (GSH) with a wide range of endogenous and xenobiotic...; Region: GST_N_family; cd00570
216591030722	C-terminal domain interface [polypeptide binding]; other site
216591030723	GSH binding site (G-site) [chemical binding]; other site
216591030724	dimer interface [polypeptide binding]; other site
216591030725	C-terminal, alpha helical domain of the Glutathione S-transferase family; Region: GST_C_family; cl02776
216591030726	dimer interface [polypeptide binding]; other site
216591030727	N-terminal domain interface [polypeptide binding]; other site
216591030728	substrate binding pocket (H-site) [chemical binding]; other site
216591030729	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 4.2e-05
216591030730	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 9.2e-08
216591030731	Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446
216591030732	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
216591030733	active site residue [active]
216591030734	HMMPfam hit to PF00581, Rhodanese-like domain, score 9.3e-14
216591030735	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 3e-28
216591030736	chromosome replication initiation inhibitor protein; Provisional; Region: PRK13348
216591030737	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591030738	The C-terminal substrate binding domain of LysR-type transcriptional regulator, ArgP (IciA), for arginine exporter (ArgO); contains the type 2 periplasmic binding fold; Region: PBP2_IciA_ArgP; cd08428
216591030739	putative dimerization interface [polypeptide binding]; other site
216591030740	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix protei, score 1e-16
216591030741	Predicted helix-turn-helix motif with score 1349.000, SD 3.78 at aa 20-41, sequence GSFEQAAVRLHVTASAVTQRVR
216591030742	PS00044 Bacterial regulatory proteins, lysR family signature.
216591030743	Protein of unknown function (DUF1059); Region: DUF1059; cl02284
216591030744	Threonine aldolase [Amino acid transport and metabolism]; Region: GLY1; COG2008
216591030745	Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I).  TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a...; Region: TA_like; cd06502
216591030746	tetramer interface [polypeptide binding]; other site
216591030747	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591030748	catalytic residue [active]
216591030749	HMMPfam hit to PF01212, Beta-eliminating lyase, score 3.2e-138
216591030750	Glycine-zipper containing OmpA-like membrane domain; Region: Gly-zipper_OmpA; pfam13436
216591030751	2 probable transmembrane helices predicted for BCAM2672 by TMHMM2.0 at aa 13-35 and 94-116
216591030752	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030753	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030754	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
216591030755	Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; pfam01654
216591030756	HMMPfam hit to PF01654, Bacterial Cytochrome Ubiquinol Oxidase, score 5.7e-205
216591030757	9 probable transmembrane helices predicted for BCAM2674 by TMHMM2.0 at aa 15-37, 57-79, 99-121, 128-150, 187-209, 222-239, 323-345, 358-380 and 408-430
216591030758	Cytochrome oxidase subunit II; Region: Cyto_ox_2; pfam02322
216591030759	cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219
216591030760	HMMPfam hit to PF02322, Cytochrome oxidase subunit II, score 2e-135
216591030761	8 probable transmembrane helices predicted for BCAM2675 by TMHMM2.0 at aa 13-35, 72-94, 114-136, 156-178, 191-210, 225-244, 257-279 and 299-321
216591030762	PS00079 Multicopper oxidases signature 1.
216591030763	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030764	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030765	1 probable transmembrane helix predicted for BCAM2676 by TMHMM2.0 at aa 7-29
216591030766	1 probable transmembrane helix predicted for BCAM2677 by TMHMM2.0 at aa 20-42
216591030767	Sulfatase; Region: Sulfatase; cl17466
216591030768	Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]; Region: AslA; COG3119
216591030769	Sulfatase; Region: Sulfatase; cl17466
216591030770	HMMPfam hit to PF00884, Sulfatase, score 0.0027
216591030771	HMMPfam hit to PF01663, Type I phosphodiesterase / nucleotide py, score 4.1e-15
216591030772	Domain of Unknown Function (DUF748); Region: DUF748; pfam05359
216591030773	Domain of Unknown Function (DUF748); Region: DUF748; pfam05359
216591030774	Domain of Unknown Function (DUF748); Region: DUF748; pfam05359
216591030775	Domain of Unknown Function (DUF748); Region: DUF748; pfam05359
216591030776	HMMPfam hit to PF05359, Domain of Unknown Function (DUF748), score 8.9e-45
216591030777	HMMPfam hit to PF05359, Domain of Unknown Function (DUF748), score 3.3e-24
216591030778	HMMPfam hit to PF05359, Domain of Unknown Function (DUF748), score 2.1e-07
216591030779	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030780	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030781	HMMPfam hit to PF05359, Domain of Unknown Function (DUF748), score 2.9e-20
216591030782	1 probable transmembrane helix predicted for BCAM2680 by TMHMM2.0 at aa 29-51
216591030783	Uncharacterized conserved protein [Function unknown]; Region: COG5361
216591030784	Protein of unknown function (DUF1254); Region: DUF1254; pfam06863
216591030785	Protein of unknown function (DUF1214); Region: DUF1214; cl08447
216591030786	HMMPfam hit to PF06742, Protein of unknown function (DUF1214), score 1.5e-40
216591030787	HMMPfam hit to PF06863, Protein of unknown function (DUF1254), score 9.4e-28
216591030788	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030789	HicB family; Region: HicB; pfam05534
216591030790	HMMPfam hit to PF05534, HicB family, score 4.4e-16
216591030791	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cl00207
216591030792	metal-binding site [ion binding]
216591030793	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
216591030794	metal-binding site [ion binding]
216591030795	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
216591030796	metal-binding site [ion binding]
216591030797	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217
216591030798	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
216591030799	metal-binding site [ion binding]
216591030800	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
216591030801	Soluble P-type ATPase [General function prediction only]; Region: COG4087
216591030802	HMMPfam hit to PF00403, Heavy-metal-associated domain, score 5.9e-15
216591030803	PS01047 Heavy-metal-associated domain.
216591030804	HMMPfam hit to PF00403, Heavy-metal-associated domain, score 5.5e-19
216591030805	PS01047 Heavy-metal-associated domain.
216591030806	HMMPfam hit to PF00403, Heavy-metal-associated domain, score 2.1e-19
216591030807	PS01047 Heavy-metal-associated domain.
216591030808	HMMPfam hit to PF00403, Heavy-metal-associated domain, score 1.3e-15
216591030809	PS01047 Heavy-metal-associated domain.
216591030810	8 probable transmembrane helices predicted for BCAM2683 by TMHMM2.0 at aa 375-394, 404-426, 439-456, 466-483, 621-643, 648-670, 970-989 and 993-1012
216591030811	HMMPfam hit to PF00122, E1-E2 ATPase, score 7e-97
216591030812	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030813	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 9.9e-30
216591030814	PS00154 E1-E2 ATPases phosphorylation site.
216591030815	PS01229 Hypothetical cof family signature 2.
216591030816	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591030817	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 6.4e-14
216591030818	PS00036 bZIP transcription factors basic domain signature.
216591030819	1 probable transmembrane helix predicted for BCAM2686 by TMHMM2.0 at aa 294-311
216591030820	MgtC family; Region: MgtC; pfam02308
216591030821	HMMPfam hit to PF02308, MgtC family, score 4.5e-51
216591030822	3 probable transmembrane helices predicted for BCAM2687 by TMHMM2.0 at aa 39-61, 71-90 and 103-134
216591030823	dimerization interface [polypeptide binding]; other site
216591030824	AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is...; Region: AGE; cl00183
216591030825	putative active cleft [active]
216591030826	HMMPfam hit to PF07221, N-acylglucosamine 2-epimerase (GlcNAc, score 1.8e-67
216591030827	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030828	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591030829	methyl-accepting chemotaxis protein II; Provisional; Region: PRK15048
216591030830	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
216591030831	dimer interface [polypeptide binding]; other site
216591030832	ligand binding site [chemical binding]; other site
216591030833	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591030834	dimer interface [polypeptide binding]; other site
216591030835	putative CheW interface [polypeptide binding]; other site
216591030836	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 3.3e-92
216591030837	HMMPfam hit to PF00672, HAMP domain, score 1.5e-07
216591030838	2 probable transmembrane helices predicted for BCAM2689 by TMHMM2.0 at aa 10-32 and 185-207
216591030839	HMMPfam hit to PF02203, Tar ligand binding domain homologue, score 2.3e-08
216591030840	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
216591030841	CoenzymeA binding site [chemical binding]; other site
216591030842	subunit interaction site [polypeptide binding]; other site
216591030843	PHB binding site; other site
216591030844	HMMPfam hit to PF03061, Thioesterase superfamily, score 2.4e-12
216591030845	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591030846	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591030847	HMMPfam hit to PF02515, CoA-transferase family III, score 1.2e-53
216591030848	IclR helix-turn-helix domain; Region: HTH_IclR; cl17605
216591030849	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591030850	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 0.00045
216591030851	enoyl-CoA hydratase; Provisional; Region: PRK09245
216591030852	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591030853	substrate binding site [chemical binding]; other site
216591030854	oxyanion hole (OAH) forming residues; other site
216591030855	trimer interface [polypeptide binding]; other site
216591030856	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 1.3e-42
216591030857	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591030858	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591030859	Subunit A of Class III extradiol dioxygenases; Region: Extradiol_Dioxygenase_3A_like; cl06673
216591030860	HMMPfam hit to PF02515, CoA-transferase family III, score 3.7e-62
216591030861	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591030862	carnitinyl-CoA dehydratase; Provisional; Region: PRK03580
216591030863	substrate binding site [chemical binding]; other site
216591030864	oxyanion hole (OAH) forming residues; other site
216591030865	trimer interface [polypeptide binding]; other site
216591030866	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 5.8e-55
216591030867	PS00166 Enoyl-CoA hydratase/isomerase signature.
216591030868	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030869	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591030870	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591030871	trimer interface [polypeptide binding]; other site
216591030872	eyelet of channel; other site
216591030873	1 probable transmembrane helix predicted for BCAM2696 by TMHMM2.0 at aa 12-34
216591030874	HMMPfam hit to PF00267, Gram-negative porin, score 0.00023
216591030875	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591030876	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591030877	putative substrate translocation pore; other site
216591030878	12 probable transmembrane helices predicted for BCAM2697 by TMHMM2.0 at aa 30-52, 67-89, 102-121, 125-147, 154-176, 189-211, 257-279, 289-311, 323-342, 346-368, 380-402 and 412-431
216591030879	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 8.5e-57
216591030880	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591030881	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591030882	Acyl-CoA dehydrogenase; Region: ACAD; cd00567
216591030883	active site
216591030884	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 9.4e-27
216591030885	PS00072 Acyl-CoA dehydrogenases signature 1.
216591030886	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 4.6e-48
216591030887	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 2.3e-15
216591030888	Esterases and lipases (includes fungal lipases, cholinesterases, etc.)  These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cd00312
216591030889	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591030890	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
216591030891	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 9.9e-75
216591030892	probable AcnD-accessory protein PrpF; Region: prpF; TIGR02334
216591030893	HMMPfam hit to PF04303, Protein of unknown function (DUF453), score 2.9e-276
216591030894	1 probable transmembrane helix predicted for BCAM2700 by TMHMM2.0 at aa 318-340
216591030895	2-methylisocitrate dehydratase, Fe/S-dependent; Region: 2met_isocit_dHY; TIGR02333
216591030896	Aconitase A catalytic domain; Region: AcnA_IRP; cd01586
216591030897	substrate binding site [chemical binding]; other site
216591030898	ligand binding site [chemical binding]; other site
216591030899	Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme...; Region: Aconitase_swivel; cl00215
216591030900	substrate binding site [chemical binding]; other site
216591030901	HMMPfam hit to PF00694, Aconitase C-terminal domain, score 1.3e-31
216591030902	HMMPfam hit to PF00330, Aconitase family (aconitate hydratase), score 1.3e-145
216591030903	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591030904	Citrate synthase [Energy production and conversion]; Region: GltA; COG0372
216591030905	Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS)...; Region: Ec2MCS_like_1; cd06117
216591030906	dimer interface [polypeptide binding]; other site
216591030907	active site
216591030908	citrylCoA binding site [chemical binding]; other site
216591030909	oxalacetate/citrate binding site [chemical binding]; other site
216591030910	coenzyme A binding site [chemical binding]; other site
216591030911	catalytic triad [active]
216591030912	HMMPfam hit to PF00285, Citrate synthase, score 8.7e-105
216591030913	PS00480 Citrate synthase signature.
216591030914	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030915	Phosphoenolpyruvate phosphomutase; Region: PEP_mutase; pfam13714
216591030916	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
216591030917	tetramer interface [polypeptide binding]; other site
216591030918	active site
216591030919	Mg2+/Mn2+ binding site [ion binding]; other site
216591030920	Propionate catabolism activator; Region: PrpR_N; pfam06506
216591030921	Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]; Region: RocR; COG3829
216591030922	PAS domain; Region: PAS; smart00091
216591030923	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591030924	Walker A motif; other site
216591030925	ATP binding site [chemical binding]; other site
216591030926	Walker B motif; other site
216591030927	arginine finger; other site
216591030928	Bacterial regulatory protein, Fis family; Region: HTH_8; cl17420
216591030929	HMMPfam hit to PF06506, Propionate catabolism activator, score 4.7e-68
216591030930	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 2.2e-135
216591030931	HMMPfam hit to PF07728, ATPase family associated with various, score 0.00015
216591030932	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591030933	PS00017 ATP/GTP-binding site motif A (P-loop).
216591030934	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591030935	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 3.3e-09
216591030936	Predicted helix-turn-helix motif with score 1006.000, SD 2.61 at aa 617-638, sequence GDRDRACAMLGISKTTLWRKLS
216591030937	Protein of unknown function (DUF1470); Region: DUF1470; pfam07336
216591030938	CGNR zinc finger; Region: zf-CGNR; pfam11706
216591030939	HMMPfam hit to PF07336, Protein of unknown function (DUF1470), score 8.6e-34
216591030940	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_19; cd07262
216591030941	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591030942	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 7.8e-09
216591030943	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
216591030944	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591030945	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 1.6e-79
216591030946	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591030947	IclR helix-turn-helix domain; Region: HTH_IclR; cl17605
216591030948	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591030949	Predicted helix-turn-helix motif with score 1335.000, SD 3.73 at aa 45-66, sequence LTRTEITKELGRNASEIYRMLE
216591030950	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 0.00021
216591030951	acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717
216591030952	CoA binding domain; Region: CoA_binding_2; pfam13380
216591030953	Succinyl-CoA ligase like flavodoxin domain; Region: Succ_CoA_lig; pfam13607
216591030954	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
216591030955	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591030956	Coenzyme A binding pocket [chemical binding]; other site
216591030957	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1e-10
216591030958	HMMPfam hit to PF02629, CoA binding domain, score 4.1e-05
216591030959	H-NS histone family; Region: Histone_HNS; pfam00816
216591030960	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
216591030961	HMMPfam hit to PF00816, H-NS histone family, score 1.2e-19
216591030962	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 7.5e-05
216591030963	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591030964	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591030965	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591030966	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-31
216591030967	PAS fold; Region: PAS_4; pfam08448
216591030968	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
216591030969	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591030970	Walker B motif; other site
216591030971	arginine finger; other site
216591030972	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
216591030973	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 3.2e-09
216591030974	Predicted helix-turn-helix motif with score 1022.000, SD 2.67 at aa 468-489, sequence GKVVEAAARIGIGRATLYKKLA
216591030975	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591030976	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 3.5e-133
216591030977	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591030978	HMMPfam hit to PF08448, PAS fold, score 0.00012
216591030979	H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]; Region: GntT; COG2610
216591030980	HMMPfam hit to PF03600, Citrate transporter score 1e-112
216591030981	9 probable transmembrane helices predicted for BCAM2716 by TMHMM2.0 at aa 21-43, 58-80, 101-123, 176-198, 227-249, 282-304, 317-348, 363-385 and 443-465
216591030982	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591030983	Signal peptide predicted for BCAM2717 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.987 between residues 22 and 23
216591030984	Thioredoxin-like domain; Region: Thioredoxin_2; pfam13098
216591030985	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591030986	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591030987	HMMPfam hit to PF00085, Thioredoxin, score 0.0029
216591030988	1 probable transmembrane helix predicted for BCAM2718 by TMHMM2.0 at aa 7-29
216591030989	putative acetyltransferase YhhY; Provisional; Region: PRK10140
216591030990	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
216591030991	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.2e-24
216591030992	phospholipase C, phosphocholine-specific, Pseudomonas-type; Region: PC_PLC; TIGR03396
216591030993	Phosphoesterase family; Region: Phosphoesterase; pfam04185
216591030994	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591030995	Domain of unknown function (DUF756); Region: DUF756; pfam05506
216591030996	HMMPfam hit to PF04185, Phosphoesterase family, score 3.6e-130
216591030997	Predicted helix-turn-helix motif with score 1119.000, SD 3.00 at aa 467-488, sequence STLRFLEKRFGVAEPQISAYRR
216591030998	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 3.9e-33
216591030999	HMMPfam hit to PF05506, Domain of unknown function (DUF756), score 4.5e-09
216591031000	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
216591031001	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
216591031002	GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a...; Region: GlpE_ST; cd01444
216591031003	active site residue [active]
216591031004	5 probable transmembrane helices predicted for BCAM2722 by TMHMM2.0 at aa 13-35, 50-72, 105-127, 137-159 and 172-194
216591031005	outer membrane porin, OprD family; Region: OprD; pfam03573
216591031006	HMMPfam hit to PF03573, outer membrane porin, OprD family, score 3.1e-152
216591031007	oligopeptide ABC transporter ATP-binding protein OppF; Provisional; Region: PRK15079
216591031008	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591031009	Walker A/P-loop; other site
216591031010	ATP binding site [chemical binding]; other site
216591031011	Q-loop/lid; other site
216591031012	ABC transporter signature motif; other site
216591031013	Walker B; other site
216591031014	D-loop; other site
216591031015	H-loop/switch region; other site
216591031016	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591031017	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter C-termi, score 3.3e-28
216591031018	HMMPfam hit to PF00005, ABC transporter score 5.8e-60
216591031019	PS00211 ABC transporters family signature.
216591031020	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031021	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444
216591031022	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591031023	Walker A/P-loop; other site
216591031024	ATP binding site [chemical binding]; other site
216591031025	Q-loop/lid; other site
216591031026	ABC transporter signature motif; other site
216591031027	Walker B; other site
216591031028	D-loop; other site
216591031029	H-loop/switch region; other site
216591031030	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591031031	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter C-termi, score 5.1e-26
216591031032	HMMPfam hit to PF00005, ABC transporter score 1.7e-62
216591031033	PS00211 ABC transporters family signature.
216591031034	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031035	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
216591031036	oligopeptide ABC transporter permease OppC; Provisional; Region: PRK15406
216591031037	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591031038	dimer interface [polypeptide binding]; other site
216591031039	conserved gate region; other site
216591031040	putative PBP binding loops; other site
216591031041	ABC-ATPase subunit interface; other site
216591031042	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1e-45
216591031043	5 probable transmembrane helices predicted for BCAM2726 by TMHMM2.0 at aa 36-58, 105-127, 147-169, 212-234 and 266-288
216591031044	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031045	oligopeptide transporter permease; Reviewed; Region: oppB; PRK09471
216591031046	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
216591031047	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591031048	ABC-ATPase subunit interface; other site
216591031049	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 9.2e-46
216591031050	6 probable transmembrane helices predicted for BCAM2727 by TMHMM2.0 at aa 9-31, 99-121, 134-156, 176-195, 238-260 and 280-299
216591031051	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591031052	oligopeptide ABC transporter substrate-binding protein OppA; Provisional; Region: PRK15104
216591031053	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
216591031054	peptide binding site [polypeptide binding]; other site
216591031055	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 8.6e-75
216591031056	DNA-binding transcriptional repressor PuuR; Provisional; Region: PRK09943
216591031057	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591031058	non-specific DNA binding site [nucleotide binding]; other site
216591031059	salt bridge; other site
216591031060	sequence-specific DNA binding site [nucleotide binding]; other site
216591031061	Cupin domain; Region: Cupin_2; pfam07883
216591031062	HMMPfam hit to PF05899, Protein of unknown function (DUF861), score 0.0022
216591031063	HMMPfam hit to PF07883, Cupin domain, score 2e-18
216591031064	HMMPfam hit to PF01381, Helix-turn-helix, score 3.4e-13
216591031065	Predicted helix-turn-helix motif with score 1474.000, SD 4.21 at aa 29-50, sequence RTLDDTATAAGISKPFLSQVER
216591031066	dipeptide/tripeptide permease B; Provisional; Region: PRK10207
216591031067	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591031068	putative substrate translocation pore; other site
216591031069	POT family; Region: PTR2; cl17359
216591031070	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-11
216591031071	14 probable transmembrane helices predicted for BCAM2730 by TMHMM2.0 at aa 20-37, 47-69, 78-95, 100-117, 138-160, 165-187, 208-227, 232-254, 261-283, 314-336, 349-371, 381-403, 410-432 and 459-481
216591031072	HMMPfam hit to PF00854, POT family, score 2.2e-46
216591031073	OpgC protein; Region: OpgC_C; pfam10129
216591031074	10 probable transmembrane helices predicted for BCAM2731 by TMHMM2.0 at aa 24-46, 56-75, 96-118, 150-172, 177-195, 205-224, 231-253, 273-295, 308-330 and 345-367
216591031075	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031076	Predicted permeases [General function prediction only]; Region: RarD; COG2962
216591031077	Multidrug resistance efflux transporter; Region: EmrE; pfam13536
216591031078	10 probable transmembrane helices predicted for BCAM2732 by TMHMM2.0 at aa 7-24, 39-57, 77-99, 104-126, 133-150, 154-173, 180-202, 212-234, 241-263 and 268-290
216591031079	acylphosphatase; Provisional; Region: PRK14424
216591031080	HMMPfam hit to PF00708, Acylphosphatase, score 5.5e-15
216591031081	PS00151 Acylphosphatase signature 2.
216591031082	PS00150 Acylphosphatase signature 1.
216591031083	hopanoid-associated sugar epimerase; Region: HpnA; TIGR03466
216591031084	uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs; Region: AR_FR_like_1_SDR_e; cd05228
216591031085	putative NADP binding site [chemical binding]; other site
216591031086	putative substrate binding site [chemical binding]; other site
216591031087	active site
216591031088	HMMPfam hit to PF04321, RmlD substrate binding domain, score 0.0027
216591031089	HMMPfam hit to PF05368, NmrA-like family, score 4.1e-05
216591031090	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 4.2e-47
216591031091	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 1.4e-11
216591031092	HMMPfam hit to PF07993, Male sterility protein, score 7.5e-10
216591031093	hopene-associated glycosyltransferase HpnB; Region: HpnB; TIGR03469
216591031094	Glycosyl transferase family 2; Region: Glycos_transf_2; pfam00535
216591031095	active site
216591031096	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
216591031097	4 probable transmembrane helices predicted for BCAM2737 by TMHMM2.0 at aa 5-27, 300-322, 329-346 and 356-378
216591031098	HMMPfam hit to PF00535, Glycosyl transferase family, score 3.6e-21
216591031099	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed; Region: ispH; PRK01045
216591031100	LytB protein; Region: LYTB; pfam02401
216591031101	HMMPfam hit to PF02401, LytB protein, score 1.4e-179
216591031102	hopanoid biosynthesis associated radical SAM protein HpnH; Region: HpnH; TIGR03470
216591031103	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591031104	FeS/SAM binding site; other site
216591031105	Domain of unknown function (DUF3463); Region: DUF3463; pfam11946
216591031106	HMMPfam hit to PF04055, Radical SAM superfamily, score 5.5e-20
216591031107	Dopa 4,5-dioxygenase family; Region: DOPA_dioxygen; pfam08883
216591031108	Ketosteroid isomerase homolog [Function unknown]; Region: COG4319
216591031109	Predicted membrane protein, hemolysin III homolog [General function prediction only]; Region: COG1272
216591031110	channel protein, hemolysin III family; Region: hlyIII; TIGR01065
216591031111	7 probable transmembrane helices predicted for BCAM2744 by TMHMM2.0 at aa 7-29, 39-56, 77-95, 100-122, 127-149, 153-175 and 182-204
216591031112	HMMPfam hit to PF03006, Haemolysin-III related, score 2.9e-64
216591031113	Protein of unknown function (DUF466); Region: DUF466; pfam04328
216591031114	HMMPfam hit to PF04328, Protein of unknown function (DUF466), score 3.1e-34
216591031115	carbon starvation protein A; Provisional; Region: PRK15015
216591031116	Carbon starvation protein CstA; Region: CstA; pfam02554
216591031117	C-terminal domain on CstA (DUF4161); Region: DUF4161; pfam13722
216591031118	16 probable transmembrane helices predicted for BCAM2746 by TMHMM2.0 at aa 7-29, 34-53, 86-108, 118-140, 161-183, 193-210, 217-239, 254-276, 283-305, 320-342, 363-385, 463-482, 509-528, 543-565, 572-594 and 642-664
216591031119	HMMPfam hit to PF02554, Carbon starvation protein CstA, score 6.1e-255
216591031120	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031121	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031122	diaminopimelate epimerase; Provisional; Region: dapF; PRK00450
216591031123	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
216591031124	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
216591031125	HMMPfam hit to PF01678, Diaminopimelate epimerase, score 3.6e-07
216591031126	HMMPfam hit to PF01678, Diaminopimelate epimerase, score 1.8e-26
216591031127	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031128	RNA polymerase sigma-70 factor, TIGR02957 family; Region: SigX4
216591031129	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
216591031130	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
216591031131	DNA binding residues [nucleotide binding]
216591031132	HMMPfam hit to PF04542, Sigma-70 region, score 1.3e-17
216591031133	HMMPfam hit to PF08281, Sigma-70, region, score 5.6e-14
216591031134	HMMPfam hit to PF04545, Sigma-70, region, score 6.6e-06
216591031135	Carboxymuconolactone decarboxylase family; Region: CMD; pfam02627
216591031136	Uncharacterized conserved protein [Function unknown]; Region: COG2128
216591031137	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 3.1e-22
216591031138	Cupin domain; Region: Cupin_2; pfam07883
216591031139	1 probable transmembrane helix predicted for BCAM2750 by TMHMM2.0 at aa 7-29
216591031140	HMMPfam hit to PF07883, Cupin domain, score 1.3e-16
216591031141	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591031142	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591031143	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591031144	putative effector binding pocket; other site
216591031145	dimerization interface [polypeptide binding]; other site
216591031146	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2e-18
216591031147	Predicted helix-turn-helix motif with score 1999.000, SD 6.00 at aa 36-57, sequence GSFARAADRLGVGRSSVSRHVQ
216591031148	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.7e-47
216591031149	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591031150	NADH(P)-binding; Region: NAD_binding_10; pfam13460
216591031151	NAD(P) binding site [chemical binding]; other site
216591031152	active site
216591031153	HMMPfam hit to PF04321, RmlD substrate binding domain, score 0.0015
216591031154	HMMPfam hit to PF05368, NmrA-like family, score 6.1e-06
216591031155	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 0.00013
216591031156	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 0.003
216591031157	OsmC-like protein; Region: OsmC; cl00767
216591031158	HMMPfam hit to PF02566, OsmC-like protein, score 4.8e-27
216591031159	classical (c) SDRs; Region: SDR_c; cd05233
216591031160	NAD(P) binding site [chemical binding]; other site
216591031161	active site
216591031162	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.7e-27
216591031163	1 probable transmembrane helix predicted for BCAM2754 by TMHMM2.0 at aa 27-46
216591031164	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0011
216591031165	PS00061 Short-chain dehydrogenases/reductases family signature.
216591031166	PRC-barrel domain; Region: PRC; pfam05239
216591031167	HMMPfam hit to PF05239, PRC-barrel domain, score 2.1e-08
216591031168	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591031169	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591031170	active site
216591031171	phosphorylation site [posttranslational modification]
216591031172	intermolecular recognition site; other site
216591031173	dimerization interface [polypeptide binding]; other site
216591031174	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591031175	DNA binding residues [nucleotide binding]
216591031176	dimerization interface [polypeptide binding]; other site
216591031177	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 4.7e-16
216591031178	PS00622 Bacterial regulatory proteins, luxR family signature.
216591031179	Predicted helix-turn-helix motif with score 1140.000, SD 3.07 at aa 190-211, sequence MSVSDIASKFSRSPKTISAQKQ
216591031180	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.7e-22
216591031181	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031182	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591031183	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591031184	substrate binding pocket [chemical binding]; other site
216591031185	membrane-bound complex binding site; other site
216591031186	hinge residues; other site
216591031187	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591031188	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591031189	dimer interface [polypeptide binding]; other site
216591031190	phosphorylation site [posttranslational modification]
216591031191	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591031192	ATP binding site [chemical binding]; other site
216591031193	Mg2+ binding site [ion binding]; other site
216591031194	G-X-G motif; other site
216591031195	Response regulator receiver domain; Region: Response_reg; pfam00072
216591031196	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591031197	active site
216591031198	phosphorylation site [posttranslational modification]
216591031199	intermolecular recognition site; other site
216591031200	dimerization interface [polypeptide binding]; other site
216591031201	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 4.3e-19
216591031202	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 5.6e-42
216591031203	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.6e-26
216591031204	HMMPfam hit to PF01627, Hpt domain, score 1.4e-10
216591031205	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591031206	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591031207	substrate binding pocket [chemical binding]; other site
216591031208	membrane-bound complex binding site; other site
216591031209	hinge residues; other site
216591031210	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591031211	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591031212	dimer interface [polypeptide binding]; other site
216591031213	phosphorylation site [posttranslational modification]
216591031214	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591031215	ATP binding site [chemical binding]; other site
216591031216	Mg2+ binding site [ion binding]; other site
216591031217	G-X-G motif; other site
216591031218	Response regulator receiver domain; Region: Response_reg; pfam00072
216591031219	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591031220	active site
216591031221	phosphorylation site [posttranslational modification]
216591031222	intermolecular recognition site; other site
216591031223	dimerization interface [polypeptide binding]; other site
216591031224	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.6e-28
216591031225	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 2.8e-38
216591031226	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 2.7e-16
216591031227	2 probable transmembrane helices predicted for BCAM2758 by TMHMM2.0 at aa 15-37 and 294-313
216591031228	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031229	CblD like pilus biogenesis initiator; Region: CblD; pfam07434
216591031230	HMMPfam hit to PF07434, CblD like pilus biogenesis initiator, score 4.1e-273
216591031231	fimbrial outer membrane usher protein TcfC; Provisional; Region: PRK15310
216591031232	Predicted helix-turn-helix motif with score 983.000, SD 2.53 at aa 436-457, sequence GNTQQISIADGVSWSVYRYQMR
216591031233	CS1 type fimbrial major subunit; Region: Fimbrial_CS1; pfam04449
216591031234	HMMPfam hit to PF04449, CS1 type fimbrial major subunit, score 1.1e-92
216591031235	putative fimbrial protein TcfA; Provisional; Region: PRK15308
216591031236	phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional; Region: PRK12755
216591031237	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
216591031238	HMMPfam hit to PF00793, DAHP synthetase I family, score 2.4e-147
216591031239	Secretory lipase; Region: LIP; pfam03583
216591031240	HMMPfam hit to PF03583, Secretory lipase, score 8.2e-32
216591031241	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031242	Protein of unknown function, DUF480; Region: DUF480; pfam04337
216591031243	HMMPfam hit to PF04337, Protein of unknown function, DUF480, score 5.4e-74
216591031244	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031245	short chain dehydrogenase; Provisional; Region: PRK07023
216591031246	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591031247	NAD(P) binding site [chemical binding]; other site
216591031248	active site
216591031249	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.3e-08
216591031250	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2258
216591031251	MOSC domain; Region: MOSC; pfam03473
216591031252	3-alpha domain; Region: 3-alpha; pfam03475
216591031253	HMMPfam hit to PF03473, MOSC domain, score 7.9e-45
216591031254	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
216591031255	Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408
216591031256	inhibitor site; inhibition site
216591031257	active site
216591031258	dimer interface [polypeptide binding]; other site
216591031259	catalytic residue [active]
216591031260	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 8e-47
216591031261	class II aldolase/adducin domain protein; Provisional; Region: PRK07090
216591031262	intersubunit interface [polypeptide binding]; other site
216591031263	active site
216591031264	Zn2+ binding site [ion binding]; other site
216591031265	HMMPfam hit to PF00596, Class II Aldolase and Adducin N-terminal, score 1.7e-54
216591031266	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031267	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591031268	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591031269	non-specific DNA binding site [nucleotide binding]; other site
216591031270	salt bridge; other site
216591031271	sequence-specific DNA binding site [nucleotide binding]; other site
216591031272	Cupin domain; Region: Cupin_2; pfam07883
216591031273	HMMPfam hit to PF01381, Helix-turn-helix, score 4.4e-17
216591031274	Predicted helix-turn-helix motif with score 1631.000, SD 4.74 at aa 14-35, sequence WTLDVLADETGLTKSYLSKVER
216591031275	HMMPfam hit to PF07883, Cupin domain, score 3.2e-15
216591031276	histidine utilization repressor, proteobacterial; Region: his_ut_repres; TIGR02018
216591031277	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591031278	DNA-binding site [nucleotide binding]; DNA binding site
216591031279	UTRA domain; Region: UTRA; pfam07702
216591031280	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 8.5e-21
216591031281	Predicted helix-turn-helix motif with score 1291.000, SD 3.58 at aa 32-53, sequence PSELDLAAQFGVARMTVNRALR
216591031282	HMMPfam hit to PF07702, UTRA domain, score 4.2e-43
216591031283	Phytanoyl-CoA dioxygenase (PhyH); Region: PhyH; cl17312
216591031284	HMMPfam hit to PF05721, Phytanoyl-CoA dioxygenase (PhyH), score 2.9e-19
216591031285	histidine ABC transporter substrate-binding protein HisJ; Provisional; Region: PRK15437
216591031286	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591031287	substrate binding pocket [chemical binding]; other site
216591031288	membrane-bound complex binding site; other site
216591031289	hinge residues; other site
216591031290	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 6.8e-87
216591031291	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591031292	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591031293	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591031294	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591031295	dimerization interface [polypeptide binding]; other site
216591031296	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.3e-17
216591031297	Predicted helix-turn-helix motif with score 1426.000, SD 4.04 at aa 21-42, sequence GSFTTASARLHSTQSTVSQKVR
216591031298	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.1e-32
216591031299	Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109
216591031300	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 3.6e-07
216591031301	cytosine deaminase; Provisional; Region: PRK05985
216591031302	Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi; Region: Bact_CD; cd01293
216591031303	active site
216591031304	HMMPfam hit to PF07969, Amidohydrolase family, score 1.6e-13
216591031305	cytosine deaminase; Provisional; Region: PRK05985
216591031306	Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi; Region: Bact_CD; cd01293
216591031307	active site
216591031308	HMMPfam hit to PF01979, Amidohydrolase family, score 0.00061
216591031309	HMMPfam hit to PF07969, Amidohydrolase family, score 4.3e-26
216591031310	Glycine zipper 2TM domain; Region: Rick_17kDa_Anti; cl10470
216591031311	1 probable transmembrane helix predicted for BCAM2781 by TMHMM2.0 at aa 12-34
216591031312	HMMPfam hit to PF05433, Rickettsia 17 kDa surface antigen, score 2.1e-12
216591031313	Acetyltransferase (GNAT) domain; Region: Acetyltransf_4; pfam13420
216591031314	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591031315	Coenzyme A binding pocket [chemical binding]; other site
216591031316	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.6e-19
216591031317	Endopygalactorunase [Cell envelope biogenesis, outer membrane]; Region: PGU1; COG5434
216591031318	Probable polygalacturonase At3g15720; Region: PLN03003; cl14103
216591031319	HMMPfam hit to PF00295, Glycosyl hydrolases family, score 1.1e-05
216591031320	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031321	PS00502 Polygalacturonase active site.
216591031322	aminotransferase; Validated; Region: PRK07046
216591031323	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
216591031324	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591031325	catalytic residue [active]
216591031326	HMMPfam hit to PF00202, Aminotransferase class-III, score 7.4e-14
216591031327	Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473
216591031328	M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666
216591031329	metal binding site [ion binding]; metal-binding site
216591031330	putative dimer interface [polypeptide binding]; other site
216591031331	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 5e-58
216591031332	diaminopropionate ammonia-lyase; Provisional; Region: PRK08206
216591031333	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
216591031334	catalytic residue [active]
216591031335	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 4.1e-26
216591031336	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591031337	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591031338	putative DNA binding site [nucleotide binding]; other site
216591031339	putative Zn2+ binding site [ion binding]; other site
216591031340	AsnC family; Region: AsnC_trans_reg; pfam01037
216591031341	Predicted helix-turn-helix motif with score 1571.000, SD 4.54 at aa 22-43, sequence TPQAELGARVNLSTAAVNRRLR
216591031342	PS00519 Bacterial regulatory proteins, asnC family signature.
216591031343	HMMPfam hit to PF01037, AsnC family, score 3.5e-22
216591031344	Tannase and feruloyl esterase; Region: Tannase; pfam07519
216591031345	HMMPfam hit to PF07519, Tannase and feruloyl esterase, score 6.1e-147
216591031346	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591031347	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591031348	trimer interface [polypeptide binding]; other site
216591031349	eyelet of channel; other site
216591031350	HMMPfam hit to PF00267, Gram-negative porin, score 1.7e-05
216591031351	putative 3-hydroxyphenylpropionic transporter MhpT; Provisional; Region: PRK11551
216591031352	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591031353	putative substrate translocation pore; other site
216591031354	HMMPfam hit to PF00083, Sugar (and other) transporter score 3.1e-05
216591031355	12 probable transmembrane helices predicted for BCAM2790 by TMHMM2.0 at aa 13-35, 45-67, 80-99, 104-126, 139-161, 166-188, 221-240, 255-277, 284-306, 310-332, 345-367 and 372-394
216591031356	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.1e-51
216591031357	PS00217 Sugar transport proteins signature 2.
216591031358	PS00216 Sugar transport proteins signature 1.
216591031359	feruloyl-CoA synthase; Reviewed; Region: PRK08180
216591031360	Feruloyl-CoA synthetase (FCS); Region: FCS; cd05921
216591031361	acyl-activating enzyme (AAE) consensus motif; other site
216591031362	putative AMP binding site [chemical binding]; other site
216591031363	putative active site [active]
216591031364	putative CoA binding site [chemical binding]; other site
216591031365	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.2e-59
216591031366	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591031367	Salicylaldehyde dehydrogenase, DoxF-like; Region: ALDH_SaliADH; cd07105
216591031368	NAD(P) binding site [chemical binding]; other site
216591031369	catalytic residues [active]
216591031370	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 4.3e-190
216591031371	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591031372	p-hydroxycinnamoyl CoA hydratase/lyase; Validated; Region: PRK09120
216591031373	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
216591031374	substrate binding site [chemical binding]; other site
216591031375	oxyanion hole (OAH) forming residues; other site
216591031376	trimer interface [polypeptide binding]; other site
216591031377	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase family, score 9.7e-43
216591031378	PS00166 Enoyl-CoA hydratase/isomerase signature.
216591031379	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591031380	MarR family; Region: MarR_2; pfam12802
216591031381	HMMPfam hit to PF01047, MarR family, score 1.5e-10
216591031382	SMP-30/Gluconolaconase/LRE-like region; Region: SGL; pfam08450
216591031383	HMMPfam hit to PF08450, SMP-30/Gluconolaconase/LRE-like region, score 3.3e-35
216591031384	HMMPfam hit to PF03758, Senescence marker protein-30 (SMP-30), N-ter, score 3.2e-23
216591031385	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591031386	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591031387	TM-ABC transporter signature motif; other site
216591031388	10 probable transmembrane helices predicted for BCAM2796 by TMHMM2.0 at aa 27-49, 59-81, 86-105, 109-131, 136-155, 175-197, 202-224, 229-248, 261-292 and 307-324
216591031389	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.3e-52
216591031390	L-arabinose transporter ATP-binding protein; Provisional; Region: araG; PRK11288
216591031391	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591031392	Walker A/P-loop; other site
216591031393	ATP binding site [chemical binding]; other site
216591031394	Q-loop/lid; other site
216591031395	ABC transporter signature motif; other site
216591031396	Walker B; other site
216591031397	D-loop; other site
216591031398	H-loop/switch region; other site
216591031399	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591031400	HMMPfam hit to PF00005, ABC transporter score 3.2e-30
216591031401	PS00211 ABC transporters family signature.
216591031402	HMMPfam hit to PF00005, ABC transporter score 2.8e-60
216591031403	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031404	Periplasmic binding proteins and sugar binding domain of LacI family; Region: Peripla_BP_1; pfam00532
216591031405	Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily; Region: PBP1_arabinose_binding; cd01540
216591031406	ligand binding site [chemical binding]; other site
216591031407	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 1.1e-35
216591031408	1 probable transmembrane helix predicted for BCAM2798 by TMHMM2.0 at aa 13-35
216591031409	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
216591031410	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
216591031411	HMMPfam hit to PF02894, Oxidoreductase family, C-terminal alph, score 0.01
216591031412	HMMPfam hit to PF01408, Oxidoreductase family, NAD-binding Ros, score 3.3e-28
216591031413	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
216591031414	Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408
216591031415	inhibitor site; inhibition site
216591031416	active site
216591031417	dimer interface [polypeptide binding]; other site
216591031418	catalytic residue [active]
216591031419	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 3.5e-11
216591031420	dihydroxy-acid dehydratase; Validated; Region: PRK06131
216591031421	HMMPfam hit to PF00920, Dehydratase family, score 1.2e-227
216591031422	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031423	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031424	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031425	PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1.
216591031426	pca operon transcription factor PcaQ; Region: TF_pcaQ; TIGR02424
216591031427	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591031428	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591031429	dimerization interface [polypeptide binding]; other site
216591031430	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.1e-18
216591031431	Predicted helix-turn-helix motif with score 1579.000, SD 4.56 at aa 28-49, sequence GSIHRAAAALNMTQPAASKLLR
216591031432	PS00044 Bacterial regulatory proteins, lysR family signature.
216591031433	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.3e-35
216591031434	PS00307 Legume lectins beta-chain signature.
216591031435	Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism]; Region: osmC; COG1764
216591031436	HMMPfam hit to PF02566, OsmC-like protein, score 2.7e-25
216591031437	Transcriptional regulators [Transcription]; Region: GntR; COG1802
216591031438	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591031439	DNA-binding site [nucleotide binding]; DNA binding site
216591031440	FCD domain; Region: FCD; pfam07729
216591031441	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 4.3e-23
216591031442	Predicted helix-turn-helix motif with score 1013.000, SD 2.64 at aa 51-72, sequence LVERDLAERFGISRIPMREAIQ
216591031443	HMMPfam hit to PF07729, FCD domain, score 1.4e-10
216591031444	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591031445	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591031446	DNA binding site [nucleotide binding]
216591031447	domain linker motif; other site
216591031448	Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily; Region: PBP1_LacI_sugar_binding_like; cd06267
216591031449	dimerization interface [polypeptide binding]; other site
216591031450	ligand binding site [chemical binding]; other site
216591031451	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 5.3e-13
216591031452	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 1.3e-08
216591031453	Predicted helix-turn-helix motif with score 1741.000, SD 5.12 at aa 2-23, sequence ATLDEVARRAGVTAATVSNVLR
216591031454	PS00356 Bacterial regulatory proteins, lacI family signature.
216591031455	maltose/maltodextrin transporter ATP-binding protein; Provisional; Region: PRK11000
216591031456	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
216591031457	Walker A/P-loop; other site
216591031458	ATP binding site [chemical binding]; other site
216591031459	Q-loop/lid; other site
216591031460	ABC transporter signature motif; other site
216591031461	Walker B; other site
216591031462	D-loop; other site
216591031463	H-loop/switch region; other site
216591031464	TOBE domain; Region: TOBE_2; pfam08402
216591031465	HMMPfam hit to PF00005, ABC transporter score 2.3e-48
216591031466	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031467	PS00211 ABC transporters family signature.
216591031468	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031469	HMMPfam hit to PF08402, TOBE domain, score 1.1e-10
216591031470	HMMPfam hit to PF03459, TOBE domain, score 1.8e-05
216591031471	Beta-galactosidase [Carbohydrate transport and metabolism]; Region: LacA; COG1874
216591031472	Beta-galactosidase; Region: Glyco_hydro_42; pfam02449
216591031473	A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain; Region: A4_beta-galactosidase_middle_domain; cd03143
216591031474	HMMPfam hit to PF02449, Beta-galactosidase, score 6.5e-215
216591031475	HMMPfam hit to PF08532, Beta-galactosidase trimerisation doma, score 2.9e-51
216591031476	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
216591031477	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
216591031478	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 2.2e-37
216591031479	ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555
216591031480	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591031481	dimer interface [polypeptide binding]; other site
216591031482	putative PBP binding loops; other site
216591031483	ABC-ATPase subunit interface; other site
216591031484	6 probable transmembrane helices predicted for BCAM2809 by TMHMM2.0 at aa 20-42, 77-99, 111-130, 157-179, 200-222 and 258-280
216591031485	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.00086
216591031486	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
216591031487	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591031488	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
216591031489	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591031490	dimer interface [polypeptide binding]; other site
216591031491	conserved gate region; other site
216591031492	putative PBP binding loops; other site
216591031493	ABC-ATPase subunit interface; other site
216591031494	7 probable transmembrane helices predicted for BCAM2810 by TMHMM2.0 at aa 21-43, 81-103, 110-132, 147-169, 190-212, 217-239 and 246-268
216591031495	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 9.5e-19
216591031496	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591031497	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591031498	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591031499	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591031500	dimerization interface [polypeptide binding]; other site
216591031501	substrate binding pocket [chemical binding]; other site
216591031502	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.8e-15
216591031503	Predicted helix-turn-helix motif with score 1552.000, SD 4.47 at aa 42-63, sequence GSVSKAADHLCRTQGAVSRQIQ
216591031504	PS00044 Bacterial regulatory proteins, lysR family signature.
216591031505	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.5e-24
216591031506	ATP-dependent RNA helicase SrmB; Provisional; Region: PRK11192
216591031507	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
216591031508	ATP binding site [chemical binding]; other site
216591031509	Mg++ binding site [ion binding]; other site
216591031510	motif III; other site
216591031511	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
216591031512	nucleotide binding region [chemical binding]; other site
216591031513	ATP-binding site [chemical binding]; other site
216591031514	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031515	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 1.9e-32
216591031516	HMMPfam hit to PF00270, DEAD/DEAH box helicase, score 4.3e-68
216591031517	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 1.9e-05
216591031518	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
216591031519	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031520	Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]; Region: COG2070
216591031521	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
216591031522	FMN binding site [chemical binding]; other site
216591031523	substrate binding site [chemical binding]; other site
216591031524	putative catalytic residue [active]
216591031525	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, score 2.3e-63
216591031526	PS00912 Dihydroorotate dehydrogenase signature 2.
216591031527	DNA-binding transcriptional regulator GlcC; Provisional; Region: PRK09990
216591031528	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591031529	DNA-binding site [nucleotide binding]; DNA binding site
216591031530	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
216591031531	HMMPfam hit to PF07729, FCD domain, score 1.9e-36
216591031532	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 1.5e-17
216591031533	PS00043 Bacterial regulatory proteins, gntR family signature.
216591031534	glycolate oxidase subunit GlcD; Provisional; Region: PRK11230
216591031535	FAD binding domain; Region: FAD_binding_4; pfam01565
216591031536	HMMPfam hit to PF01565, FAD binding domain, score 3.8e-57
216591031537	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 4.5e-89
216591031538	FAD binding domain; Region: FAD_binding_4; pfam01565
216591031539	glycolate oxidase FAD binding subunit; Provisional; Region: glcE; PRK11282
216591031540	HMMPfam hit to PF01565, FAD binding domain, score 7.5e-17
216591031541	glycolate oxidase iron-sulfur subunit; Provisional; Region: glcF; PRK11274
216591031542	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
216591031543	Cysteine-rich domain; Region: CCG; pfam02754
216591031544	Cysteine-rich domain; Region: CCG; pfam02754
216591031545	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.011
216591031546	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591031547	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.00075
216591031548	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591031549	HMMPfam hit to PF02754, Cysteine-rich domain, score 6.3e-07
216591031550	HMMPfam hit to PF02754, Cysteine-rich domain, score 2.4e-15
216591031551	Domain of unknown function (DUF336); Region: DUF336; cl01249
216591031552	HMMPfam hit to PF03928, Domain of unknown function (DUF336), score 4.4e-47
216591031553	malate synthase G; Provisional; Region: PRK02999
216591031554	active site
216591031555	HMMPfam hit to PF01274, Malate synthase, score 0
216591031556	Cache domain; Region: Cache_1; pfam02743
216591031557	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591031558	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591031559	metal binding site [ion binding]; metal-binding site
216591031560	active site
216591031561	I-site; other site
216591031562	2 probable transmembrane helices predicted for BCAM2822 by TMHMM2.0 at aa 22-44 and 299-321
216591031563	HMMPfam hit to PF00990, GGDEF domain, score 4.1e-67
216591031564	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG4564
216591031565	Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins; Region: Cache_2; smart01049
216591031566	Histidine kinase; Region: HisKA_3; pfam07730
216591031567	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591031568	ATP binding site [chemical binding]; other site
216591031569	Mg2+ binding site [ion binding]; other site
216591031570	G-X-G motif; other site
216591031571	2 probable transmembrane helices predicted for BCAM2823 by TMHMM2.0 at aa 7-26 and 208-230
216591031572	HMMPfam hit to PF08269, Cache domain, score 5.2e-27
216591031573	HMMPfam hit to PF07730, Histidine kinase, score 2.1e-17
216591031574	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.5e-19
216591031575	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591031576	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591031577	active site
216591031578	phosphorylation site [posttranslational modification]
216591031579	intermolecular recognition site; other site
216591031580	dimerization interface [polypeptide binding]; other site
216591031581	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591031582	DNA binding residues [nucleotide binding]
216591031583	dimerization interface [polypeptide binding]; other site
216591031584	HMMPfam hit to PF00072, Response regulator receiver domain, score 5.2e-32
216591031585	HMMPfam hit to PF08281, Sigma-70, region, score 5.5e-07
216591031586	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 1.4e-20
216591031587	PS00622 Bacterial regulatory proteins, luxR family signature.
216591031588	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591031589	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591031590	putative substrate translocation pore; other site
216591031591	14 probable transmembrane helices predicted for BCAM2825 by TMHMM2.0 at aa 7-29, 44-66, 75-97, 102-121, 134-156, 166-185, 198-217, 227-245, 266-288, 298-320, 327-349, 353-375, 396-418 and 461-483
216591031592	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.9e-59
216591031593	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031594	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591031595	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591031596	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 4.2e-18
216591031597	PS01081 Bacterial regulatory proteins, tetR family signature.
216591031598	Predicted helix-turn-helix motif with score 1079.000, SD 2.86 at aa 58-79, sequence TTISEIVEHAQVAKGTFYHYFE
216591031599	Toluene tolerance, Ttg2; Region: Tol_Tol_Ttg2; pfam05494
216591031600	HMMPfam hit to PF05494, Toluene tolerance, Ttg2, score 1.2e-36
216591031601	hopanoid biosynthesis associated RND transporter like protein HpnN; Region: HpnN; TIGR03480
216591031602	12 probable transmembrane helices predicted for BCAM2828 by TMHMM2.0 at aa 17-39, 277-296, 303-325, 329-351, 371-393, 403-425, 457-479, 717-739, 746-768, 773-795, 808-830 and 840-859
216591031603	VacJ like lipoprotein; Region: VacJ; cl01073
216591031604	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031605	HMMPfam hit to PF04333, VacJ like lipoprotein, score 2.1e-84
216591031606	hypothetical protein; Provisional; Region: PRK07077
216591031607	squalene-hopene cyclase; Region: hopene_cyclase; TIGR01507
216591031608	Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY)  and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization...; Region: SQCY_1; cd02892
216591031609	Active site cavity [active]
216591031610	catalytic acid [active]
216591031611	HMMPfam hit to PF00432, Prenyltransferase and squalene oxidase re, score 8e-09
216591031612	HMMPfam hit to PF00432, Prenyltransferase and squalene oxidase re, score 5e-10
216591031613	PS01074 Terpene synthases signature.
216591031614	HMMPfam hit to PF00432, Prenyltransferase and squalene oxidase re, score 6e-07
216591031615	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
216591031616	squalene-associated FAD-dependent desaturase; Region: HpnE; TIGR03467
216591031617	HMMPfam hit to PF01593, Flavin containing amine oxidoreductase, score 1.5e-26
216591031618	Predicted helix-turn-helix motif with score 1024.000, SD 2.67 at aa 317-338, sequence ATIRDAGRWLDMPRDTLARRIW
216591031619	Trans-Isoprenyl Diphosphate Synthases, head-to-head; Region: Trans_IPPS_HH; cd00683
216591031620	active site lid residues [active]
216591031621	substrate binding pocket [chemical binding]; other site
216591031622	catalytic residues [active]
216591031623	substrate-Mg2+ binding site; other site
216591031624	aspartate-rich region 1; other site
216591031625	aspartate-rich region 2; other site
216591031626	HMMPfam hit to PF00494, Squalene/phytoene synthase, score 1.1e-23
216591031627	PS01045 Squalene and phytoene synthases signature 2.
216591031628	methyl indole-3-acetate methyltransferase; Region: PLN02211; cl17657
216591031629	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591031630	PS00120 Lipases, serine active site.
216591031631	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591031632	PAS domain; Region: PAS_9; pfam13426
216591031633	putative active site [active]
216591031634	heme pocket [chemical binding]; other site
216591031635	Putative heavy-metal-binding; Region: YbjQ_1; cl00426
216591031636	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591031637	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591031638	metal binding site [ion binding]; metal-binding site
216591031639	active site
216591031640	I-site; other site
216591031641	HMMPfam hit to PF00990, GGDEF domain, score 1.3e-58
216591031642	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031643	Putative pseudogene. May also be transcribed as two separate CDS
216591031644	PS00216 Sugar transport proteins signature 1.
216591031645	HMMPfam hit to PF04509, CheC-like family, score 1.1e-05
216591031646	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.5e-24
216591031647	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591031648	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591031649	dimer interface [polypeptide binding]; other site
216591031650	phosphorylation site [posttranslational modification]
216591031651	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591031652	ATP binding site [chemical binding]; other site
216591031653	Mg2+ binding site [ion binding]; other site
216591031654	G-X-G motif; other site
216591031655	Response regulator receiver domain; Region: Response_reg; pfam00072
216591031656	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591031657	active site
216591031658	phosphorylation site [posttranslational modification]
216591031659	intermolecular recognition site; other site
216591031660	dimerization interface [polypeptide binding]; other site
216591031661	1 probable transmembrane helix predicted for BCAM2839 by TMHMM2.0 at aa 40-62
216591031662	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 0.00033
216591031663	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 8.2e-24
216591031664	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.9e-20
216591031665	Predicted flavoprotein [General function prediction only]; Region: COG0431
216591031666	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591031667	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 5.7e-30
216591031668	Initiator Replication protein; Region: Rep_3; pfam01051
216591031669	ParB-like nuclease domain; Region: ParB; smart00470
216591031670	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
216591031671	HMMPfam hit to PF02195, ParB-like nuclease domain, score 1.3e-10
216591031672	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
216591031673	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591031674	P-loop; other site
216591031675	Magnesium ion binding site [ion binding]; other site
216591031676	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 1.5e-22
216591031677	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591031678	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591031679	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591031680	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591031681	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031682	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591031683	AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719
216591031684	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591031685	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591031686	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.7e-13
216591031687	PS00041 Bacterial regulatory proteins, araC family signature.
216591031688	Predicted helix-turn-helix motif with score 1047.000, SD 2.75 at aa 239-260, sequence LRVDDLAAQVQMSSSTFHHHFR
216591031689	HMMPfam hit to PF06719, AraC-type transcriptional regulator N-termin, score 2.8e-65
216591031690	Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Region: COG2220
216591031691	Beta-lactamase superfamily domain; Region: Lactamase_B_2; pfam12706
216591031692	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591031693	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591031694	AefR-like transcriptional repressor, C-terminal region; Region: TetR_C_7; pfam14246
216591031695	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 2.1e-20
216591031696	Predicted helix-turn-helix motif with score 1610.000, SD 4.67 at aa 34-55, sequence TSMDRIAARADVSKRTVYNHFP
216591031697	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
216591031698	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
216591031699	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591031700	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 0.0032
216591031701	Protein of unknown function (DUF2889); Region: DUF2889; pfam11136
216591031702	ProQ/FINO family; Region: ProQ; pfam04352
216591031703	Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]; Region: ProQ; COG3109
216591031704	HMMPfam hit to PF04352, ProQ activator of osmoprotectant transporter, score 1.6e-28
216591031705	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
216591031706	EamA-like transporter family; Region: EamA; pfam00892
216591031707	10 probable transmembrane helices predicted for BCAS0011 by TMHMM2.0 at aa 7-29, 33-55, 76-98, 103-125, 132-149, 154-172, 185-207, 217-239, 246-268 and 272-289
216591031708	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 3.7e-15
216591031709	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031710	NifQ; Region: NifQ; pfam04891
216591031711	HMMPfam hit to PF04891, NifQ, score 8.5e-18
216591031712	TOBE domain; Region: TOBE; cl01440
216591031713	TOBE domain; Region: TOBE; cl01440
216591031714	HMMPfam hit to PF03459, TOBE domain, score 1.7e-13
216591031715	HMMPfam hit to PF03459, TOBE domain, score 1e-16
216591031716	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591031717	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1e-25
216591031718	HMMPfam hit to PF02321, Outer membrane efflux protein, score 5.1e-18
216591031719	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031720	Multidrug resistance efflux pump [Defense mechanisms]; Region: EmrA; COG1566
216591031721	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591031722	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591031723	HMMPfam hit to PF00529, HlyD family secretion protein, score 4.9e-16
216591031724	1 probable transmembrane helix predicted for BCAS0015 by TMHMM2.0 at aa 7-29
216591031725	Protein of unknown function (DUF1656); Region: DUF1656; pfam07869
216591031726	HMMPfam hit to PF07869, Protein of unknown function (DUF1656), score 7.7e-21
216591031727	2 probable transmembrane helices predicted for BCAS0016 by TMHMM2.0 at aa 7-29 and 41-63
216591031728	Fusaric acid resistance protein family; Region: FUSC; pfam04632
216591031729	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
216591031730	9 probable transmembrane helices predicted for BCAS0017 by TMHMM2.0 at aa 15-37, 56-78, 82-101, 108-125, 135-157, 369-391, 420-442, 449-468 and 495-517
216591031731	HMMPfam hit to PF04632, Fusaric acid resistance protein conserved re, score 4.3e-15
216591031732	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031733	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031734	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591031735	Winged helix DNA-binding domain; Region: HTH_27; pfam13463
216591031736	HMMPfam hit to PF01047, MarR family, score 4.6e-08
216591031737	The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509
216591031738	Uncharacterized conserved protein [Function unknown]; Region: COG3777
216591031739	The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509
216591031740	active site 2 [active]
216591031741	active site 1 [active]
216591031742	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591031743	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591031744	active site
216591031745	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal doma, score 1.9e-13
216591031746	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 1.3e-22
216591031747	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 5.2e-37
216591031748	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 7e-07
216591031749	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031750	PS00073 Acyl-CoA dehydrogenases signature 2.
216591031751	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591031752	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591031753	HMMPfam hit to PF02515, CoA-transferase family III, score 4.1e-59
216591031754	MmgE/PrpD family; Region: MmgE_PrpD; cl00912
216591031755	HMMPfam hit to PF03972, MmgE/PrpD family, score 1.5e-111
216591031756	Citrate lyase beta subunit [Carbohydrate transport and metabolism]; Region: CitE; COG2301
216591031757	HMMPfam hit to PF03328, HpcH/HpaI aldolase/citrate lyase family, score 2.2e-33
216591031758	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591031759	DNA-binding site [nucleotide binding]; DNA binding site
216591031760	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167
216591031761	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591031762	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591031763	homodimer interface [polypeptide binding]; other site
216591031764	catalytic residue [active]
216591031765	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR fam, score 9.5e-13
216591031766	Predicted helix-turn-helix motif with score 1454.000, SD 4.14 at aa 47-68, sequence APQRDVASSLGVSVQTVTNAYK
216591031767	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.1e-07
216591031768	hypothetical protein; Provisional; Region: PRK06815
216591031769	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
216591031770	tetramer interface [polypeptide binding]; other site
216591031771	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591031772	catalytic residue [active]
216591031773	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 6.2e-69
216591031774	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.
216591031775	ectoine utilization protein EutC; Validated; Region: PRK08291
216591031776	ornithine cyclodeaminase; Validated; Region: PRK06823; cl17400
216591031777	HMMPfam hit to PF02423, Ornithine cyclodeaminase/mu-crystalli, score 1.1e-93
216591031778	HMMPfam hit to PF01488, Shikimate / quinate 5-dehydrogenase, score 7e-06
216591031779	ectoine utilization protein EutD; Region: ectoine_eutD; TIGR02993
216591031780	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
216591031781	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cd01066
216591031782	active site
216591031783	HMMPfam hit to PF00557, metallopeptidase family M24, score 5.7e-08
216591031784	ectoine utilization protein EutE; Region: ectoine_eutE; TIGR02994
216591031785	Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup; Region: M14_ASTE_ASPA_like_2; cd06252
216591031786	putative active site [active]
216591031787	Zn binding site [ion binding]; other site
216591031788	HMMPfam hit to PF04952, Succinylglutamate desuccinylase / Aspartoac, score 2.2e-99
216591031789	PS00107 Protein kinases ATP-binding region signature.
216591031790	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591031791	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591031792	putative DNA binding site [nucleotide binding]; other site
216591031793	putative Zn2+ binding site [ion binding]; other site
216591031794	AsnC family; Region: AsnC_trans_reg; pfam01037
216591031795	Predicted helix-turn-helix motif with score 1095.000, SD 2.92 at aa 21-42, sequence ITKSKLAEAVNLSISPAWERVR
216591031796	HMMPfam hit to PF01037, AsnC family, score 1.1e-24
216591031797	succinic semialdehyde dehydrogenase; Region: PLN02278
216591031798	Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103
216591031799	tetramerization interface [polypeptide binding]; other site
216591031800	NAD(P) binding site [chemical binding]; other site
216591031801	catalytic residues [active]
216591031802	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1e-198
216591031803	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591031804	PS00070 Aldehyde dehydrogenases cysteine active site.
216591031805	hypothetical protein; Provisional; Region: PRK07482
216591031806	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591031807	inhibitor-cofactor binding pocket; inhibition site
216591031808	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591031809	catalytic residue [active]
216591031810	HMMPfam hit to PF00202, Aminotransferase class-III, score 9.3e-74
216591031811	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591031812	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591031813	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591031814	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591031815	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591031816	Predicted helix-turn-helix motif with score 1703.000, SD 4.99 at aa 20-41, sequence EAIRAVARTHGLSHSTVSQWYA
216591031817	putative transposase OrfB; Reviewed; Region: PHA02517
216591031818	HTH-like domain; Region: HTH_21; pfam13276
216591031819	Integrase core domain; Region: rve; pfam00665
216591031820	Integrase core domain; Region: rve_2; pfam13333
216591031821	HMMPfam hit to PF00665, Integrase core domain, score 5.1e-42
216591031822	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
216591031823	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 2.1e-19
216591031824	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591031825	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591031826	putative substrate translocation pore; other site
216591031827	HMMPfam hit to PF00083, Sugar (and other) transporter, score 9.8e-33
216591031828	12 probable transmembrane helices predicted for BCAS0035 by TMHMM2.0 at aa 50-67, 72-94, 106-128, 138-160, 173-195, 205-227, 265-287, 302-324, 331-350, 360-382, 395-417 and 422-444
216591031829	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031830	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3e-25
216591031831	PS00216 Sugar transport proteins signature 1.
216591031832	PS00217 Sugar transport proteins signature 2.
216591031833	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
216591031834	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591031835	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591031836	dimerization interface [polypeptide binding]; other site
216591031837	substrate binding pocket [chemical binding]; other site
216591031838	HMMPfam hit to PF03466, LysR substrate binding domain, score 7e-37
216591031839	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031840	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.2e-25
216591031841	PS00044 Bacterial regulatory proteins, lysR family signature.
216591031842	Predicted helix-turn-helix motif with score 1579.000, SD 4.56 at aa 16-37, sequence GSFTRAASELGIAQPALSQALN
216591031843	benzoate transport; Region: 2A0115; TIGR00895
216591031844	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591031845	putative substrate translocation pore; other site
216591031846	HMMPfam hit to PF00083, Sugar (and other) transporter, score 2.1e-07
216591031847	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.9e-42
216591031848	12 probable transmembrane helices predicted for BCAS0037 by TMHMM2.0 at aa 20-42, 52-71, 78-100, 110-132, 145-164, 168-187, 222-244, 254-276, 288-307, 312-334, 347-369 and 374-396
216591031849	PS00217 Sugar transport proteins signature 2.
216591031850	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031851	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591031852	active site
216591031853	HMMPfam hit to PF04909, Amidohydrolase, score 4.2e-47
216591031854	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031855	Phosphoenolpyruvate phosphomutase; Region: PEP_mutase; pfam13714
216591031856	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
216591031857	tetramer interface [polypeptide binding]; other site
216591031858	active site
216591031859	Mg2+/Mn2+ binding site [ion binding]; other site
216591031860	alpha-ketoglutarate transporter; Provisional; Region: PRK10406
216591031861	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591031862	putative substrate translocation pore; other site
216591031863	HMMPfam hit to PF00083, Sugar (and other) transporter, score 2.7e-31
216591031864	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.5e-13
216591031865	11 probable transmembrane helices predicted for BCAS0040 by TMHMM2.0 at aa 27-49, 56-78, 102-124, 153-175, 190-209, 242-262, 277-299, 308-330, 335-357, 369-391 and 401-418
216591031866	PS00217 Sugar transport proteins signature 2.
216591031867	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
216591031868	FeS/SAM binding site; other site
216591031869	HMMPfam hit to PF04055, Radical SAM superfamily, score 0.016
216591031870	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591031871	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591031872	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 9.8e-40
216591031873	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031874	PS00261 Glycoprotein hormones beta chain signature 1.
216591031875	L-lysine 6-monooxygenase (NADPH-requiring); Region: K_oxygenase; pfam13434
216591031876	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
216591031877	ATP-grasp domain; Region: ATP-grasp_4; pfam13535
216591031878	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, ATP-gr, score 4.7e-05
216591031879	methionyl-tRNA synthetase; Reviewed; Region: PRK11893
216591031880	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
216591031881	active site
216591031882	nucleotide binding site [chemical binding]; other site
216591031883	HIGH motif; other site
216591031884	KMSKS motif; other site
216591031885	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
216591031886	PS00356 Bacterial regulatory proteins, lacI family signature.
216591031887	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591031888	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591031889	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031890	HMMPfam hit to PF02515, CoA-transferase family III, score 4e-62
216591031891	Cupin domain; Region: Cupin_2; pfam07883
216591031892	HMMPfam hit to PF07883, Cupin domain, score 2.5e-15
216591031893	FAD dependent oxidoreductase; Region: DAO; pfam01266
216591031894	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 4.8e-08
216591031895	Predicted permeases [General function prediction only]; Region: COG0679
216591031896	HMMPfam hit to PF03547, Auxin Efflux Carrier, score 6.1e-07
216591031897	9 probable transmembrane helices predicted for BCAS0049 by TMHMM2.0 at aa 5-27, 40-57, 67-89, 102-119, 124-146, 159-181, 196-216, 223-245 and 282-304
216591031898	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591031899	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
216591031900	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591031901	active site
216591031902	HMMPfam hit to PF04909, Amidohydrolase, score 5.3e-46
216591031903	dihydroxyacetone kinase; Provisional; Region: PRK14479
216591031904	dihydroxyacetone kinase subunit DhaK; Provisional; Region: PRK14481; cl10557
216591031905	DAK2 domain; Region: Dak2; pfam02734
216591031906	HMMPfam hit to PF02734, DAK2 domain, score 3.4e-55
216591031907	HMMPfam hit to PF02733, Dak1 domain, score 2.3e-138
216591031908	psp operon transcriptional activator PspF; Region: phageshock_pspF; TIGR02974
216591031909	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591031910	Walker A motif; other site
216591031911	ATP binding site [chemical binding]; other site
216591031912	Walker B motif; other site
216591031913	arginine finger; other site
216591031914	Bacterial regulatory protein, Fis family; Region: HTH_8; cl17420
216591031915	HMMPfam hit to PF02954, Bacterial regulatory protein, Fis fam, score 0.0013
216591031916	Predicted helix-turn-helix motif with score 1247.000, SD 3.43 at aa 315-336, sequence RNQIRAAQLLGISRNVLRARLI
216591031917	PS00688 Sigma-54 interaction domain C-terminal part signature.
216591031918	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 8.6e-144
216591031919	HMMPfam hit to PF07728, ATPase family associated with various, score 0.0002
216591031920	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
216591031921	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
216591031922	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591031923	FMN reductase, MsuE subfamily; Region: FMN_reduc_MsuE; TIGR03566
216591031924	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 3.3e-09
216591031925	dimethyl sulfone monooxygenase SfnG; Region: LLM_DMSO2_sfnG; TIGR04021
216591031926	Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094
216591031927	active site
216591031928	dimer interface [polypeptide binding]; other site
216591031929	non-prolyl cis peptide bond; other site
216591031930	insertion regions; other site
216591031931	Formyltransferase, catalytic core domain; Region: FMT_core; cl00395
216591031932	cosubstrate binding site; other site
216591031933	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 3.5e-07
216591031934	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
216591031935	HMMPfam hit to PF01810, LysE type translocator, score 1.5e-16
216591031936	6 probable transmembrane helices predicted for BCAS0055 by TMHMM2.0 at aa 5-27, 40-62, 67-89, 113-135, 150-172 and 184-206
216591031937	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591031938	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591031939	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591031940	dimerization interface [polypeptide binding]; other site
216591031941	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2e-18
216591031942	Predicted helix-turn-helix motif with score 1449.000, SD 4.12 at aa 19-40, sequence GSFAQGAQAVHRSPSAVSMQIR
216591031943	PS00044 Bacterial regulatory proteins, lysR family signature.
216591031944	HMMPfam hit to PF03466, LysR substrate binding domain, score 1e-23
216591031945	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591031946	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591031947	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591031948	dimerization interface [polypeptide binding]; other site
216591031949	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-36
216591031950	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.5e-23
216591031951	PS00044 Bacterial regulatory proteins, lysR family signature.
216591031952	Predicted helix-turn-helix motif with score 1934.000, SD 5.77 at aa 23-44, sequence ESYTRAADELSLSQSAISRQVQ
216591031953	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
216591031954	FAD binding domain; Region: FAD_binding_4; pfam01565
216591031955	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
216591031956	HMMPfam hit to PF01565, FAD binding domain, score 5.3e-48
216591031957	PS00017 ATP/GTP-binding site motif A (P-loop).
216591031958	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 1.8e-61
216591031959	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591031960	Predicted helix-turn-helix motif with score 1124.000, SD 3.02 at aa 18-39, sequence LTAREFARLIRMNESSITNYSS
216591031961	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
216591031962	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
216591031963	dimerization interface [polypeptide binding]; other site
216591031964	ligand binding site [chemical binding]; other site
216591031965	HMMPfam hit to PF01094, Receptor family ligand binding region, score 1.2e-65
216591031966	putative DMT superfamily transporter inner membrane protein; Provisional; Region: PRK11272
216591031967	EamA-like transporter family; Region: EamA; pfam00892
216591031968	EamA-like transporter family; Region: EamA; pfam00892
216591031969	10 probable transmembrane helices predicted for BCAS0061 by TMHMM2.0 at aa 16-38, 48-65, 77-94, 104-126, 133-152, 156-178, 185-207, 222-244, 253-272 and 276-295
216591031970	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2e-21
216591031971	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.1e-31
216591031972	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591031973	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591031974	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591031975	dimerization interface [polypeptide binding]; other site
216591031976	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.6e-17
216591031977	Predicted helix-turn-helix motif with score 1133.000, SD 3.05 at aa 21-42, sequence GSFLAAADVSGVTHGAISRRVA
216591031978	PS00044 Bacterial regulatory proteins, lysR family signature.
216591031979	HMMPfam hit to PF03466, LysR substrate binding domain, score 3.1e-21
216591031980	4 probable transmembrane helices predicted for BCAS0064 by TMHMM2.0 at aa 7-29, 64-86, 98-120 and 130-149
216591031981	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
216591031982	GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_N_2; cd03047
216591031983	putative C-terminal domain interface [polypeptide binding]; other site
216591031984	putative GSH binding site (G-site) [chemical binding]; other site
216591031985	putative dimer interface [polypeptide binding]; other site
216591031986	C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases; Region: GST_C_2; cd03180
216591031987	putative N-terminal domain interface [polypeptide binding]; other site
216591031988	putative dimer interface [polypeptide binding]; other site
216591031989	putative substrate binding pocket (H-site) [chemical binding]; other site
216591031990	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal domain, score 4e-11
216591031991	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal domain, score 1.1e-07
216591031992	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591031993	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591031994	trimer interface [polypeptide binding]; other site
216591031995	eyelet of channel; other site
216591031996	HMMPfam hit to PF00267, Gram-negative porin, score 3.3e-06
216591031997	Probable gene remnant. Similar to an internal region of Burkholderia cepacia (strain atcc 53795/ammd) betaine-aldehyde dehydrogenase UniProt:Q0B2K6 (EMBL:CP000442 (496 aa) fasta scores: E()=3.6e-05, 68.293% id in 41 aa
216591031998	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591031999	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591032000	conserved cys residue [active]
216591032001	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591032002	HMMPfam hit to PF01965, DJ-1/PfpI family, score 7e-06
216591032003	PS00041 Bacterial regulatory proteins, araC family signature.
216591032004	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 4.5e-06
216591032005	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591032006	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591032007	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591032008	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591032009	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032010	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591032011	Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566
216591032012	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591032013	active site
216591032014	phosphorylation site [posttranslational modification]
216591032015	intermolecular recognition site; other site
216591032016	dimerization interface [polypeptide binding]; other site
216591032017	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591032018	DNA binding residues [nucleotide binding]
216591032019	dimerization interface [polypeptide binding]; other site
216591032020	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.2e-23
216591032021	HMMPfam hit to PF08281, Sigma-70, region, score 0.00041
216591032022	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 1.8e-19
216591032023	PS00622 Bacterial regulatory proteins, luxR family signature.
216591032024	PAS domain; Region: PAS_9; pfam13426
216591032025	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591032026	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591032027	ATP binding site [chemical binding]; other site
216591032028	Mg2+ binding site [ion binding]; other site
216591032029	G-X-G motif; other site
216591032030	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.3e-34
216591032031	Domain of unknown function (DUF3331); Region: DUF3331; pfam11811
216591032032	Response regulator receiver domain; Region: Response_reg; pfam00072
216591032033	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591032034	active site
216591032035	phosphorylation site [posttranslational modification]
216591032036	intermolecular recognition site; other site
216591032037	dimerization interface [polypeptide binding]; other site
216591032038	HMMPfam hit to PF00072, Response regulator receiver domain, score 6.8e-21
216591032039	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591032040	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591032041	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 4.9e-14
216591032042	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
216591032043	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
216591032044	NAD(P) binding site [chemical binding]; other site
216591032045	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 5.4e-33
216591032046	PS00190 Cytochrome c family heme-binding site signature.
216591032047	PS00059 Zinc-containing alcohol dehydrogenases signature.
216591032048	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 8.9e-26
216591032049	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591032050	TAP-like protein; Region: Abhydrolase_4; pfam08386
216591032051	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 6.1e-22
216591032052	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591032053	Arginate lyase and other MDR family members; Region: AL_MDR; cd08252
216591032054	zinc-binding alcohol dehydrogenase family protein; Region: adh_fam_1; TIGR02817
216591032055	putative NAD(P) binding site [chemical binding]; other site
216591032056	dimer interface [polypeptide binding]; other site
216591032057	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 1.9e-11
216591032058	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 5.7e-14
216591032059	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591032060	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591032061	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 4.7e-41
216591032062	mercuric reductase; Validated; Region: PRK06370
216591032063	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591032064	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
216591032065	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 3.4e-36
216591032066	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032067	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 1.5e-29
216591032068	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 3.4e-25
216591032069	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
216591032070	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591032071	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
216591032072	Walker A/P-loop; other site
216591032073	ATP binding site [chemical binding]; other site
216591032074	Q-loop/lid; other site
216591032075	ABC transporter signature motif; other site
216591032076	Walker B; other site
216591032077	D-loop; other site
216591032078	H-loop/switch region; other site
216591032079	HMMPfam hit to PF00005, ABC transporter, score 1.7e-58
216591032080	PS00211 ABC transporters family signature.
216591032081	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032082	5 probable transmembrane helices predicted for BCAS0081 by TMHMM2.0 at aa 38-60, 80-99, 154-176, 186-208 and 269-291
216591032083	PS00539 Pyrokinins signature.
216591032084	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
216591032085	1 probable transmembrane helix predicted for BCAS0082 by TMHMM2.0 at aa 20-39
216591032086	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032087	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591032088	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591032089	Bacterial transcriptional repressor; Region: TetR_C_6; pfam13977
216591032090	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 3.1e-19
216591032091	Predicted helix-turn-helix motif with score 1337.000, SD 3.74 at aa 32-53, sequence TSTAAICKAAGMSPGNLFHYFP
216591032092	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591032093	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591032094	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 2.3e-13
216591032095	Predicted helix-turn-helix motif with score 1613.000, SD 4.68 at aa 27-48, sequence FSYRDLSDLVGVKTSSIHYYFP
216591032096	peroxiredoxin, Ohr subfamily; Region: organ_hyd_perox; TIGR03561
216591032097	HMMPfam hit to PF02566, OsmC-like protein, score 1e-32
216591032098	Esterases and lipases (includes fungal lipases, cholinesterases, etc.)  These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cd00312
216591032099	alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859
216591032100	substrate binding pocket [chemical binding]; other site
216591032101	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
216591032102	1 probable transmembrane helix predicted for BCAS0086 by TMHMM2.0 at aa 7-26
216591032103	HMMPfam hit to PF07859, alpha/beta hydrolase fold, score 1.8e-96
216591032104	LrgA family; Region: LrgA; pfam03788
216591032105	HMMPfam hit to PF03788, LrgA family, score 2e-23
216591032106	3 probable transmembrane helices predicted for BCAS0087 by TMHMM2.0 at aa 20-42, 57-76 and 83-105
216591032107	Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]; Region: LrgB; COG1346
216591032108	7 probable transmembrane helices predicted for BCAS0088 by TMHMM2.0 at aa 10-32, 44-63, 73-92, 105-127, 154-176, 189-208 and 218-240
216591032109	HMMPfam hit to PF04172, LrgB-like family, score 1.4e-112
216591032110	1 probable transmembrane helix predicted for BCAS0089 by TMHMM2.0 at aa 7-29
216591032111	NAD(P)H:quinone oxidoreductase; Provisional; Region: PRK03767
216591032112	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591032113	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 1e-05
216591032114	HMMPfam hit to PF00258, Flavodoxin, score 3.9e-17
216591032115	Pirin-related protein [General function prediction only]; Region: COG1741
216591032116	Pirin; Region: Pirin; pfam02678
216591032117	HMMPfam hit to PF02678, Pirin, score 1e-64
216591032118	HMMPfam hit to PF07883, Cupin domain, score 0.0019
216591032119	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591032120	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032121	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591032122	putative effector binding pocket; other site
216591032123	dimerization interface [polypeptide binding]; other site
216591032124	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.1e-11
216591032125	Predicted helix-turn-helix motif with score 1309.000, SD 3.65 at aa 19-40, sequence GSFTAAADQLMLSKQFVSRRTM
216591032126	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.2e-54
216591032127	Fic family protein [Function unknown]; Region: COG3177
216591032128	Domain of unknown function (DUF4172); Region: DUF4172; pfam13776
216591032129	Fic/DOC family; Region: Fic; pfam02661
216591032130	HMMPfam hit to PF02661, Fic protein family, score 3.7e-20
216591032131	Protein of unknown function (DUF3311); Region: DUF3311; pfam11755
216591032132	2 probable transmembrane helices predicted for BCAS0094 by TMHMM2.0 at aa 2-24 and 34-56
216591032133	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032134	Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456
216591032135	Na binding site [ion binding]; other site
216591032136	13 probable transmembrane helices predicted for BCAS0095 by TMHMM2.0 at aa 4-18, 39-61, 71-90, 121-143, 153-175, 187-206, 226-248, 269-291, 311-333, 353-372, 376-398, 405-427 and 431-453
216591032137	HMMPfam hit to PF00474, Sodium:solute symporter family, score 4.8e-06
216591032138	Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]; Region: COG1574
216591032139	YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling; Region: YtcJ_like; cd01300
216591032140	active site
216591032141	HMMPfam hit to PF07969, Amidohydrolase family, score 1.4e-63
216591032142	putative GTP-binding protein YjiA; Provisional; Region: PRK11537
216591032143	CobW/HypB/UreG, nucleotide-binding domain; Region: cobW; pfam02492
216591032144	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; smart00833
216591032145	HMMPfam hit to PF02492, CobW/HypB/UreG, nucleotide-binding domain, score 6.1e-39
216591032146	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032147	HMMPfam hit to PF07683, Cobalamin synthesis protein cobW C-terminal, score 2.1e-06
216591032148	Protein of unknown function (DUF1311); Region: DUF1311; pfam07007
216591032149	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591032150	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591032151	DNA binding site [nucleotide binding]
216591032152	domain linker motif; other site
216591032153	This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR_like_1; cd06273
216591032154	putative dimerization interface [polypeptide binding]; other site
216591032155	putative ligand binding site [chemical binding]; other site
216591032156	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 2.7e-09
216591032157	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 1e-08
216591032158	Predicted helix-turn-helix motif with score 1651.000, SD 4.81 at aa 20-41, sequence SVLGDVAKLAGVSTATVSRVYN
216591032159	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591032160	Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174
216591032161	substrate binding site [chemical binding]; other site
216591032162	dimer interface [polypeptide binding]; other site
216591032163	ATP binding site [chemical binding]; other site
216591032164	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 2.6e-79
216591032165	PS00583 pfkB family of carbohydrate kinases signature 1.
216591032166	PS00584 pfkB family of carbohydrate kinases signature 2.
216591032167	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591032168	D-galactonate transporter; Region: 2A0114; TIGR00893
216591032169	putative substrate translocation pore; other site
216591032170	HMMPfam hit to PF00083, Sugar (and other) transporter, score 0.00018
216591032171	11 probable transmembrane helices predicted for BCAS0101 by TMHMM2.0 at aa 25-47, 62-84, 97-119, 151-173, 178-200, 246-268, 281-303, 318-336, 343-365, 375-397 and 404-426
216591032172	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.5e-70
216591032173	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032174	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032175	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
216591032176	Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408
216591032177	inhibitor site; inhibition site
216591032178	active site
216591032179	dimer interface [polypeptide binding]; other site
216591032180	catalytic residue [active]
216591032181	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 7.9e-10
216591032182	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
216591032183	HMMPfam hit to PF07195, Flagellar hook-associated protein, score 4.2e-57
216591032184	HMMPfam hit to PF07196, Flagellin hook IN motif, score 3.6e-09
216591032185	HMMPfam hit to PF02465, Flagellar hook-associated protein, score 9.9e-13
216591032186	RmlD substrate binding domain; Region: RmlD_sub_bind; pfam04321
216591032187	dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs; Region: dTDP_HR_like_SDR_e; cd05254
216591032188	NADP binding site [chemical binding]; other site
216591032189	active site
216591032190	putative substrate binding site [chemical binding]; other site
216591032191	HMMPfam hit to PF04321, RmlD substrate binding domain, score 5.7e-43
216591032192	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 0.00058
216591032193	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase f, score 7.1e-09
216591032194	HMMPfam hit to PF07993, Male sterility protein, score 2.1e-05
216591032195	Domain of unknown function (DUF389); Region: DUF389; pfam04087
216591032196	7 probable transmembrane helices predicted for BCAS0106 by TMHMM2.0 at aa 43-65, 70-92, 105-127, 142-161, 168-190, 200-222 and 241-263
216591032197	HMMPfam hit to PF04087, Domain of unknown function (DUF389), score 5.4e-74
216591032198	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591032199	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032200	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
216591032201	dimerization interface [polypeptide binding]; other site
216591032202	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.6e-15
216591032203	PS00063 Aldo/keto reductase family putative active site signature.
216591032204	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032205	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.2e-20
216591032206	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591032207	metabolite-proton symporter; Region: 2A0106; TIGR00883
216591032208	putative substrate translocation pore; other site
216591032209	HMMPfam hit to PF00083, Sugar (and other) transporter, score 1.8e-10
216591032210	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.9e-28
216591032211	12 probable transmembrane helices predicted for BCAS0108 by TMHMM2.0 at aa 27-49, 59-81, 90-112, 122-144, 165-184, 189-211, 242-259, 274-296, 309-328, 338-360, 373-395 and 405-422
216591032212	PS00216 Sugar transport proteins signature 1.
216591032213	PS00217 Sugar transport proteins signature 2.
216591032214	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
216591032215	active site
216591032216	Zn binding site [ion binding]; other site
216591032217	HMMPfam hit to PF04952, Succinylglutamate desuccinylase / Aspartoac, score 0.00017
216591032218	lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096
216591032219	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591032220	substrate binding pocket [chemical binding]; other site
216591032221	membrane-bound complex binding site; other site
216591032222	hinge residues; other site
216591032223	1 probable transmembrane helix predicted for BCAS0110 by TMHMM2.0 at aa 7-29
216591032224	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 7.6e-68
216591032225	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591032226	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591032227	dimer interface [polypeptide binding]; other site
216591032228	conserved gate region; other site
216591032229	putative PBP binding loops; other site
216591032230	ABC-ATPase subunit interface; other site
216591032231	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.2e-19
216591032232	4 probable transmembrane helices predicted for BCAS0111 by TMHMM2.0 at aa 20-42, 71-93, 98-117 and 200-222
216591032233	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591032234	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591032235	dimer interface [polypeptide binding]; other site
216591032236	conserved gate region; other site
216591032237	putative PBP binding loops; other site
216591032238	ABC-ATPase subunit interface; other site
216591032239	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.3e-11
216591032240	4 probable transmembrane helices predicted for BCAS0112 by TMHMM2.0 at aa 15-37, 57-79, 120-142 and 197-219
216591032241	ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; Region: HisP; COG4598
216591032242	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591032243	Walker A/P-loop; other site
216591032244	ATP binding site [chemical binding]; other site
216591032245	Q-loop/lid; other site
216591032246	ABC transporter signature motif; other site
216591032247	Walker B; other site
216591032248	D-loop; other site
216591032249	H-loop/switch region; other site
216591032250	HMMPfam hit to PF00005, ABC transporter, score 5.3e-64
216591032251	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032252	PS00211 ABC transporters family signature.
216591032253	Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL); Region: PAL-HAL; cd00332
216591032254	active sites [active]
216591032255	tetramer interface [polypeptide binding]; other site
216591032256	HMMPfam hit to PF00221, Phenylalanine and histidine ammonia-lyase, score 2.5e-94
216591032257	histidine utilization repressor, proteobacterial; Region: his_ut_repres; TIGR02018
216591032258	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591032259	DNA-binding site [nucleotide binding]; DNA binding site
216591032260	The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain; Region: UTRA; smart00866
216591032261	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 3.3e-23
216591032262	Predicted helix-turn-helix motif with score 1519.000, SD 4.36 at aa 51-72, sequence PTEAELVKEFGVARMTVSRALR
216591032263	HMMPfam hit to PF07702, UTRA domain, score 4.9e-30
216591032264	RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA...; Region: RT_Bac_retron_II; cd03487
216591032265	Reverse transcriptase (RNA-dependent DNA polymerase); Region: RVT_1; pfam00078
216591032266	putative active site [active]
216591032267	putative NTP binding site [chemical binding]; other site
216591032268	putative nucleic acid binding site [nucleotide binding]; other site
216591032269	H-NS histone family; Region: Histone_HNS; pfam00816
216591032270	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
216591032271	HMMPfam hit to PF00816, H-NS histone family, score 2.9e-08
216591032272	benzoate transport; Region: 2A0115; TIGR00895
216591032273	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591032274	putative substrate translocation pore; other site
216591032275	HMMPfam hit to PF00083, Sugar (and other) transporter, score 4.4e-08
216591032276	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.7e-46
216591032277	12 probable transmembrane helices predicted for BCAS0119 by TMHMM2.0 at aa 34-56, 66-85, 92-114, 118-140, 152-174, 178-197, 231-253, 268-287, 299-318, 323-345, 358-380 and 384-406
216591032278	PS00217 Sugar transport proteins signature 2.
216591032279	Possible lysine decarboxylase; Region: Lysine_decarbox; cl00695
216591032280	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591032281	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591032282	trimer interface [polypeptide binding]; other site
216591032283	eyelet of channel; other site
216591032284	HMMPfam hit to PF00267, Gram-negative porin, score 0.00011
216591032285	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591032286	D-galactonate transporter; Region: 2A0114; TIGR00893
216591032287	putative substrate translocation pore; other site
216591032288	11 probable transmembrane helices predicted for BCAS0122 by TMHMM2.0 at aa 28-45, 66-88, 98-120, 158-180, 184-206, 254-276, 291-313, 325-347, 352-374, 387-409 and 415-437
216591032289	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.5e-61
216591032290	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
216591032291	Transcriptional regulator [Transcription]; Region: IclR; COG1414
216591032292	Bacterial transcriptional regulator; Region: IclR; pfam01614
216591032293	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 2.9e-14
216591032294	putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional; Region: PRK10682
216591032295	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
216591032296	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 2.4e-09
216591032297	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
216591032298	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
216591032299	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
216591032300	HMMPfam hit to PF00805, Pentapeptide repeats (8 copies), score 2.1e-08
216591032301	HMMPfam hit to PF00805, Pentapeptide repeats (8 copies), score 1.6e-05
216591032302	HMMPfam hit to PF00805, Pentapeptide repeats (8 copies), score 4e-05
216591032303	Transcriptional regulators [Transcription]; Region: MarR; COG1846
216591032304	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591032305	dimerization interface [polypeptide binding]; other site
216591032306	putative Zn2+ binding site [ion binding]; other site
216591032307	putative DNA binding site [nucleotide binding]; other site
216591032308	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591032309	Coenzyme A binding pocket [chemical binding]; other site
216591032310	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.2e-14
216591032311	HMMPfam hit to PF01047, MarR family, score 3.3e-15
216591032312	ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]; Region: OpuBA; COG1125
216591032313	ATP-binding cassette domain of the osmoprotectant transporter; Region: ABC_OpuCA_Osmoprotection; cd03295
216591032314	Walker A/P-loop; other site
216591032315	ATP binding site [chemical binding]; other site
216591032316	Q-loop/lid; other site
216591032317	ABC transporter signature motif; other site
216591032318	Walker B; other site
216591032319	D-loop; other site
216591032320	H-loop/switch region; other site
216591032321	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing...; Region: CBS_pair_ABC_OpuCA_assoc; cd04582
216591032322	FOG: CBS domain [General function prediction only]; Region: COG0517
216591032323	HMMPfam hit to PF00571, CBS domain pair, score 1e-11
216591032324	HMMPfam hit to PF00005, ABC transporter, score 1.3e-59
216591032325	PS00211 ABC transporters family signature.
216591032326	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032327	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591032328	dimer interface [polypeptide binding]; other site
216591032329	conserved gate region; other site
216591032330	putative PBP binding loops; other site
216591032331	ABC-ATPase subunit interface; other site
216591032332	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.2e-20
216591032333	5 probable transmembrane helices predicted for BCAS0129 by TMHMM2.0 at aa 22-44, 51-73, 83-100, 150-172 and 176-198
216591032334	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591032335	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032336	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; cl17891
216591032337	Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]; Region: OpuBC; COG1732
216591032338	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 4.7e-86
216591032339	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032340	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591032341	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591032342	dimer interface [polypeptide binding]; other site
216591032343	conserved gate region; other site
216591032344	putative PBP binding loops; other site
216591032345	ABC-ATPase subunit interface; other site
216591032346	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.4e-26
216591032347	5 probable transmembrane helices predicted for BCAS0131 by TMHMM2.0 at aa 7-26, 46-68, 89-111, 175-197 and 204-226
216591032348	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591032349	Agmatinase and related proteins; Region: Agmatinase_like_1; cd11589
216591032350	oligomer interface [polypeptide binding]; other site
216591032351	agmatinase; Region: agmatinase; TIGR01230
216591032352	active site
216591032353	Mn binding site [ion binding]; other site
216591032354	HMMPfam hit to PF00491, Arginase family, score 5.2e-13
216591032355	PS01053 Arginase family signature 3.
216591032356	PS00148 Arginase family signature 2.
216591032357	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591032358	D-galactonate transporter; Region: 2A0114; TIGR00893
216591032359	putative substrate translocation pore; other site
216591032360	10 probable transmembrane helices predicted for BCAS0133 by TMHMM2.0 at aa 12-29, 52-74, 81-103, 168-190, 232-254, 269-291, 303-325, 330-352, 365-387 and 397-419
216591032361	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032362	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.8e-68
216591032363	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032364	DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013
216591032365	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032366	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591032367	dimerization interface [polypeptide binding]; other site
216591032368	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.1e-19
216591032369	Predicted helix-turn-helix motif with score 1809.000, SD 5.35 at aa 21-42, sequence RTLTAAARNLHISQPAVTKQLK
216591032370	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032371	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.2e-17
216591032372	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591032373	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591032374	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591032375	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.8e-07
216591032376	Predicted helix-turn-helix motif with score 1455.000, SD 4.14 at aa 279-300, sequence KSMTALAGALHLTERTLRRRLD
216591032377	1 probable transmembrane helix predicted for BCAS0135 by TMHMM2.0 at aa 103-125
216591032378	Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531
216591032379	11 probable transmembrane helices predicted for BCAS0136 by TMHMM2.0 at aa 34-56, 66-83, 115-137, 147-169, 182-204, 214-236, 249-271, 299-321, 353-387, 402-424 and 431-453
216591032380	HMMPfam hit to PF00324, Amino acid permease, score 2.9e-16
216591032381	hypothetical protein; Provisional; Region: PRK06541
216591032382	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591032383	inhibitor-cofactor binding pocket; inhibition site
216591032384	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591032385	catalytic residue [active]
216591032386	HMMPfam hit to PF00202, Aminotransferase class-III, score 1.6e-108
216591032387	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591032388	Rhodococcus ruber 6-oxolauric acid dehydrogenase-like; Region: ALDH_CddD_SSP0762; cd07138
216591032389	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591032390	NAD binding site [chemical binding]; other site
216591032391	catalytic residues [active]
216591032392	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 6.5e-204
216591032393	PS00070 Aldehyde dehydrogenases cysteine active site.
216591032394	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591032395	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591032396	DNA-binding site [nucleotide binding]; DNA binding site
216591032397	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
216591032398	HMMPfam hit to PF07729, FCD domain, score 2.2e-18
216591032399	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 1.3e-15
216591032400	Periplasmic binding protein; Region: Peripla_BP_6; pfam13458
216591032401	Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327
216591032402	putative ligand binding site [chemical binding]; other site
216591032403	PS00294 Prenyl group binding site (CAAX box).
216591032404	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
216591032405	TM-ABC transporter signature motif; other site
216591032406	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 4.5e-27
216591032407	7 probable transmembrane helices predicted for BCAS0141 by TMHMM2.0 at aa 10-32, 34-56, 61-83, 95-117, 137-159, 188-210 and 225-247
216591032408	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
216591032409	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
216591032410	TM-ABC transporter signature motif; other site
216591032411	8 probable transmembrane helices predicted for BCAS0142 by TMHMM2.0 at aa 30-49, 54-76, 99-121, 128-147, 178-197, 233-255, 270-292 and 299-318
216591032412	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 5.7e-39
216591032413	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032414	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
216591032415	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
216591032416	Walker A/P-loop; other site
216591032417	ATP binding site [chemical binding]; other site
216591032418	Q-loop/lid; other site
216591032419	ABC transporter signature motif; other site
216591032420	Walker B; other site
216591032421	D-loop; other site
216591032422	H-loop/switch region; other site
216591032423	HMMPfam hit to PF00005, ABC transporter, score 1e-41
216591032424	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032425	PS00211 ABC transporters family signature.
216591032426	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
216591032427	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
216591032428	Walker A/P-loop; other site
216591032429	ATP binding site [chemical binding]; other site
216591032430	Q-loop/lid; other site
216591032431	ABC transporter signature motif; other site
216591032432	Walker B; other site
216591032433	D-loop; other site
216591032434	H-loop/switch region; other site
216591032435	HMMPfam hit to PF00005, ABC transporter, score 2e-48
216591032436	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032437	PS00211 ABC transporters family signature.
216591032438	allantoate amidohydrolase; Reviewed; Region: PRK12893
216591032439	M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884
216591032440	active site
216591032441	metal binding site [ion binding]; metal-binding site
216591032442	dimer interface [polypeptide binding]; other site
216591032443	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 2.2e-40
216591032444	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 0.0035
216591032445	Uncharacterized conserved protein [Function unknown]; Region: COG5476
216591032446	Protein of unknown function (DUF1485); Region: DUF1485; pfam07364
216591032447	MlrC C-terminus; Region: MlrC_C; pfam07171
216591032448	HMMPfam hit to PF07364, Protein of unknown function (DUF1485), score 1.8e-31
216591032449	HMMPfam hit to PF07171, MlrC C-terminus, score 7.5e-35
216591032450	Uncharacterized conserved protein [Function unknown]; Region: COG3391
216591032451	1 probable transmembrane helix predicted for BCAS0147 by TMHMM2.0 at aa 13-35
216591032452	Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]; Region: COG3537
216591032453	Glycosyl hydrolase family 92; Region: Glyco_hydro_92; pfam07971
216591032454	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032455	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032456	PS00141 Eukaryotic and viral aspartyl proteases active site.
216591032457	HMMPfam hit to PF07971, Glycosyl hydrolase family, score 3e-89
216591032458	PS00041 Bacterial regulatory proteins, araC family signature.
216591032459	PS00213 Lipocalin signature.
216591032460	1 probable transmembrane helix predicted for BCAS0150 by TMHMM2.0 at aa 13-35
216591032461	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591032462	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.9e-15
216591032463	Domain of unknown function (DUF4034); Region: DUF4034; pfam13226
216591032464	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591032465	HMMPfam hit to PF08238, Sel1 repeat, score 0.12
216591032466	HMMPfam hit to PF08238, Sel1 repeat, score 1.5
216591032467	Protein of unknown function (DUF1266); Region: DUF1266; pfam06889
216591032468	beta-lactamase/D-alanine carboxypeptidase; Provisional; Region: ampC; PRK11289
216591032469	Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680
216591032470	HMMPfam hit to PF00144, Beta-lactamase, score 6.4e-91
216591032471	PS00336 Beta-lactamase class-C active site.
216591032472	Ankyrin repeats (many copies); Region: Ank_5; pfam13857
216591032473	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
216591032474	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591032475	1 probable transmembrane helix predicted for BCAS0158 by TMHMM2.0 at aa 4-23
216591032476	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591032477	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591032478	active site
216591032479	catalytic tetrad [active]
216591032480	HMMPfam hit to PF00248, Aldo/keto reductase family, score 8e-16
216591032481	Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins; Region: PYR_PYL_RCAR_like; cd07821
216591032482	putative hydrophobic ligand binding site [chemical binding]; other site
216591032483	protein interface [polypeptide binding]; other site
216591032484	gate; other site
216591032485	DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986
216591032486	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032487	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591032488	dimerization interface [polypeptide binding]; other site
216591032489	substrate binding pocket [chemical binding]; other site
216591032490	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.1e-44
216591032491	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.1e-22
216591032492	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032493	Predicted helix-turn-helix motif with score 1412.000, SD 4.00 at aa 17-38, sequence EHVGRAAERLHISQSPLSRQIA
216591032494	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591032495	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591032496	substrate binding pocket [chemical binding]; other site
216591032497	membrane-bound complex binding site; other site
216591032498	hinge residues; other site
216591032499	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 8.1e-81
216591032500	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591032501	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; pfam04324
216591032502	HMMPfam hit to PF04324, BFD-like [2Fe-2S] binding domain, score 3.7e-18
216591032503	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 2e-08
216591032504	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_4; pfam13510
216591032505	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032506	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591032507	hydroxyglutarate oxidase; Provisional; Region: PRK11728
216591032508	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 2.4e-77
216591032509	1 probable transmembrane helix predicted for BCAS0165 by TMHMM2.0 at aa 7-24
216591032510	DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013
216591032511	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032512	The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold; Region: PBP2_LysR_opines_like; cd08415
216591032513	putative dimerization interface [polypeptide binding]; other site
216591032514	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 8.2e-21
216591032515	Predicted helix-turn-helix motif with score 1743.000, SD 5.12 at aa 21-42, sequence HTVTRAARDLHISQPAVSRLIA
216591032516	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032517	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.5e-46
216591032518	squalene-hopene cyclase; Region: hopene_cyclase; TIGR01507
216591032519	Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY)  and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization...; Region: SQCY_1; cd02892
216591032520	Active site cavity [active]
216591032521	catalytic acid [active]
216591032522	HMMPfam hit to PF00432, Prenyltransferase and squalene oxidase re, score 3.2e-09
216591032523	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591032524	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591032525	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 7.9e-16
216591032526	Predicted helix-turn-helix motif with score 1596.000, SD 4.62 at aa 30-51, sequence LTLDAVAERAGVTKGALQYHFA
216591032527	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591032528	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032529	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474
216591032530	putative effector binding pocket; other site
216591032531	putative dimerization interface [polypeptide binding]; other site
216591032532	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.9e-42
216591032533	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.2e-23
216591032534	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032535	Predicted helix-turn-helix motif with score 1914.000, SD 5.71 at aa 17-38, sequence RNFTRAAAQLGVSQSALSRTVR
216591032536	Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]; Region: COG1917
216591032537	HMMPfam hit to PF07883, Cupin domain, score 1.2e-08
216591032538	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032539	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
216591032540	Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]; Region: COG0599
216591032541	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032542	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 1.8e-21
216591032543	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 1.8e-25
216591032544	Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]; Region: COG4221
216591032545	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591032546	NAD(P) binding site [chemical binding]; other site
216591032547	active site
216591032548	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.1e-43
216591032549	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0027
216591032550	PS00061 Short-chain dehydrogenases/reductases family signature.
216591032551	4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cl00235
216591032552	active site 1 [active]
216591032553	dimer interface [polypeptide binding]; other site
216591032554	hexamer interface [polypeptide binding]; other site
216591032555	active site 2 [active]
216591032556	HMMPfam hit to PF01361, Tautomerase enzyme, score 3.6e-11
216591032557	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591032558	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 0.00063
216591032559	PS00120 Lipases, serine active site.
216591032560	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591032561	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032562	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591032563	dimerization interface [polypeptide binding]; other site
216591032564	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.9e-32
216591032565	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.2e-14
216591032566	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032567	Predicted helix-turn-helix motif with score 1149.000, SD 3.10 at aa 21-42, sequence GSFARAADELARTEGAVSRQIG
216591032568	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
216591032569	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 1.4e-20
216591032570	Frameshift after codon 39
216591032571	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cl01054
216591032572	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
216591032573	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
216591032574	dimer interface [polypeptide binding]; other site
216591032575	putative CheW interface [polypeptide binding]; other site
216591032576	2 probable transmembrane helices predicted for BCAS0181 by TMHMM2.0 at aa 15-37 and 185-207
216591032577	HMMPfam hit to PF00672, HAMP domain, score 7.3e-10
216591032578	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 2.2e-82
216591032579	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591032580	Protein of unknown function (DUF3224); Region: DUF3224; pfam11528
216591032581	Predicted helix-turn-helix motif with score 1058.000, SD 2.79 at aa 16-37, sequence ESLSRVAEPSGLGRMSLGKHFH
216591032582	Acetoacetate decarboxylase (ADC); Region: ADC; cl01919
216591032583	Uncharacterized conserved protein [Function unknown]; Region: COG3268
216591032584	HMMPfam hit to PF03435, Saccharopine dehydrogenase, score 4.9e-07
216591032585	1 probable transmembrane helix predicted for BCAS0184 by TMHMM2.0 at aa 286-305
216591032586	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591032587	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032588	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591032589	dimerization interface [polypeptide binding]; other site
216591032590	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.7e-28
216591032591	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.4e-17
216591032592	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032593	Predicted helix-turn-helix motif with score 1403.000, SD 3.97 at aa 21-42, sequence RSFTGAGRRLNLSQSAVSAQIV
216591032594	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
216591032595	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591032596	HMMPfam hit to PF02525, Flavodoxin-like fold, score 2.7e-15
216591032597	LysE type translocator; Region: LysE; cl00565
216591032598	5 probable transmembrane helices predicted for BCAS0187 by TMHMM2.0 at aa 4-26, 38-57, 67-86, 150-172 and 182-204
216591032599	HMMPfam hit to PF01810, LysE type translocator, score 5e-26
216591032600	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591032601	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032602	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591032603	dimerization interface [polypeptide binding]; other site
216591032604	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.4e-18
216591032605	Predicted helix-turn-helix motif with score 1465.000, SD 4.18 at aa 34-55, sequence ENFSRAADELYLTHGAVSRAVR
216591032606	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032607	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.2e-14
216591032608	Cupin domain; Region: Cupin_2; pfam07883
216591032609	HMMPfam hit to PF07883, Cupin domain, score 0.00011
216591032610	H-NS histone family; Region: Histone_HNS; pfam00816
216591032611	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
216591032612	HMMPfam hit to PF00816, H-NS histone family, score 3.1e-16
216591032613	This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_1; cd02199
216591032614	homotrimer interaction site [polypeptide binding]; other site
216591032615	putative active site [active]
216591032616	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 0.0017
216591032617	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591032618	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591032619	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591032620	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00014
216591032621	cinnamoyl-CoA reductase; Region: PLN02214
216591032622	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591032623	NAD(P) binding site [chemical binding]; other site
216591032624	active site
216591032625	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/iso, score 7.5e-08
216591032626	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase fam, score 4.5e-21
216591032627	HMMPfam hit to PF07993, Male sterility protein, score 4.6e-10
216591032628	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591032629	DNA-binding HTH domain-containing proteins [Transcription]; Region: CsgD; COG2771
216591032630	dimerization interface [polypeptide binding]; other site
216591032631	DNA binding residues [nucleotide binding]
216591032632	Predicted helix-turn-helix motif with score 1409.000, SD 3.99 at aa 321-342, sequence HSPQECAALRGVSIGTVRAQIK
216591032633	Endopygalactorunase [Cell envelope biogenesis, outer membrane]; Region: PGU1; COG5434
216591032634	Probable polygalacturonase At3g15720; Region: PLN03003; cl14103
216591032635	HMMPfam hit to PF00295, Glycosyl hydrolases family, score 8.1e-09
216591032636	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032637	TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: DctP; COG1638
216591032638	Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; pfam03480
216591032639	HMMPfam hit to PF03480, Bacterial extracellular solute-binding prot, score 3.7e-94
216591032640	TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]; Region: DctM; COG3090
216591032641	4 probable transmembrane helices predicted for BCAS0198 by TMHMM2.0 at aa 44-66, 76-98, 119-141 and 161-183
216591032642	HMMPfam hit to PF04290, Tripartite ATP-independent periplasmic trans, score 5.4e-22
216591032643	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032644	DctM-like transporters; Region: DctM; pfam06808
216591032645	TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]; Region: DctQ; COG1593
216591032646	11 probable transmembrane helices predicted for BCAS0199 by TMHMM2.0 at aa 5-27, 42-64, 85-107, 184-206, 227-249, 254-276, 296-315, 330-349, 356-378, 388-410 and 417-439
216591032647	HMMPfam hit to PF06808, DctM-like transporters, score 5.4e-117
216591032648	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032649	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032650	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
216591032651	FAD binding domain; Region: FAD_binding_4; pfam01565
216591032652	HMMPfam hit to PF02913, FAD linked oxidases, C-terminal domain, score 1.2e-18
216591032653	HMMPfam hit to PF01565, FAD binding domain, score 8.6e-33
216591032654	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591032655	6 probable transmembrane helices predicted for BCAS0202 by TMHMM2.0 at aa 7-29, 39-56, 63-82, 97-119, 131-150 and 155-172
216591032656	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
216591032657	7 probable transmembrane helices predicted for BCAS0203 by TMHMM2.0 at aa 20-42, 160-182, 192-209, 216-238, 242-264, 269-291 and 329-351
216591032658	HMMPfam hit to PF01061, ABC-2 type transporter, score 0.00055
216591032659	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
216591032660	ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]; Region: ThiQ; COG3840
216591032661	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591032662	Walker A/P-loop; other site
216591032663	ATP binding site [chemical binding]; other site
216591032664	Q-loop/lid; other site
216591032665	ABC transporter signature motif; other site
216591032666	Walker B; other site
216591032667	D-loop; other site
216591032668	H-loop/switch region; other site
216591032669	HMMPfam hit to PF00005, ABC transporter, score 2.3e-23
216591032670	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032671	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cl00184
216591032672	HMMPfam hit to PF02668, Taurine catabolism dioxygenase TauD, TfdA fa, score 1.1e-06
216591032673	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591032674	HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase family, score 7.1e-06
216591032675	HMMPfam hit to PF08241, Methyltransferase domain, score 3.4e-22
216591032676	HMMPfam hit to PF08242, Methyltransferase domain, score 2.3e-13
216591032677	Citrate synthase; Region: Citrate_synt; pfam00285
216591032678	Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A; Region: CS_ACL-C_CCL; cl00416
216591032679	citrylCoA binding site [chemical binding]; other site
216591032680	oxalacetate binding site [chemical binding]; other site
216591032681	coenzyme A binding site [chemical binding]; other site
216591032682	catalytic triad [active]
216591032683	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591032684	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591032685	active site
216591032686	Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806
216591032687	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 6e-19
216591032688	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 5e-05
216591032689	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 7.1e-11
216591032690	acyl-CoA ligase (AMP-forming), exosortase A-associated; Region: ligase_PEP_1; TIGR03098
216591032691	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591032692	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
216591032693	acyl-activating enzyme (AAE) consensus motif; other site
216591032694	acyl-activating enzyme (AAE) consensus motif; other site
216591032695	AMP binding site [chemical binding]; other site
216591032696	active site
216591032697	CoA binding site [chemical binding]; other site
216591032698	HMMPfam hit to PF00501, AMP-binding enzyme, score 2.8e-122
216591032699	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032700	PS00455 Putative AMP-binding domain signature.
216591032701	PS00141 Eukaryotic and viral aspartyl proteases active site.
216591032702	pyridoxal-dependent decarboxylase, exosortase A system-associated; Region: dCO2ase_PEP1; TIGR03099
216591032703	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes; Region: PLPDE_III_ODC_DapDC_like; cd06810
216591032704	dimer interface [polypeptide binding]; other site
216591032705	active site
216591032706	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
216591032707	catalytic residues [active]
216591032708	substrate binding site [chemical binding]; other site
216591032709	HMMPfam hit to PF00278, Pyridoxal-dependent decarboxylase, C-, score 1.5e-12
216591032710	HMMPfam hit to PF02784, Pyridoxal-dependent decarboxylase, py, score 0.00027
216591032711	"initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are...; Region: init_cond_enzymes; cd00827
216591032712	3-oxoacyl-[acyl-carrier-protein]; Region: FabH; COG0332
216591032713	dimer interface [polypeptide binding]; other site
216591032714	active site
216591032715	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657
216591032716	dinuclear metal binding motif [ion binding]; other site
216591032717	Phosphopantetheine attachment site; Region: PKS_PP; smart00823
216591032718	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 4.3e-05
216591032719	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032720	ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]; Region: LolE; COG4591
216591032721	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
216591032722	FtsX-like permease family; Region: FtsX; pfam02687
216591032723	HMMPfam hit to PF02687, Predicted permease, score 7.7e-21
216591032724	4 probable transmembrane helices predicted for BCAS0220 by TMHMM2.0 at aa 19-41, 273-295, 322-344 and 372-394
216591032725	Predicted helix-turn-helix motif with score 976.000, SD 2.51 at aa 154-175, sequence VVGAELARKLGVHVGSVVQLMA
216591032726	Frameshift mutation after codon 26. Probably involved in production of an antifungal agent
216591032727	HMMPfam hit to PF00005, ABC transporter, score 1.3e-50
216591032728	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: CaiC; COG0318
216591032729	Fatty acyl-AMP ligase (FAAL); Region: FAAL; cd05931
216591032730	acyl-activating enzyme (AAE) consensus motif; other site
216591032731	active site
216591032732	HMMPfam hit to PF00501, AMP-binding enzyme, score 3.1e-76
216591032733	PS00455 Putative AMP-binding domain signature.
216591032734	Fatty acid desaturase; Region: FA_desaturase; pfam00487
216591032735	The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the...; Region: Membrane-FADS-like; cd01060
216591032736	putative di-iron ligands [ion binding]; other site
216591032737	The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the...; Region: Membrane-FADS-like; cl00615
216591032738	3 probable transmembrane helices predicted for BCAS0223 by TMHMM2.0 at aa 42-64, 84-103 and 181-203
216591032739	HMMPfam hit to PF00487, Fatty acid desaturase, score 2.8e-32
216591032740	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cl00264
216591032741	dinuclear metal binding motif [ion binding]; other site
216591032742	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591032743	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032744	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591032745	dimerization interface [polypeptide binding]; other site
216591032746	substrate binding pocket [chemical binding]; other site
216591032747	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.3e-15
216591032748	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591032749	Predicted helix-turn-helix motif with score 2000.000, SD 6.00 at aa 20-41, sequence LSFTRAGQELNVTQSAVSRQVK
216591032750	PS00044 Bacterial regulatory proteins, lysR family signature.
216591032751	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.3e-30
216591032752	3-oxoadipate enol-lactonase; Region: protocat_pcaD; TIGR02427
216591032753	homoserine O-acetyltransferase; Provisional; Region: metX; cl17114
216591032754	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.7e-20
216591032755	proline/glycine betaine transporter; Provisional; Region: PRK10642
216591032756	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591032757	putative substrate translocation pore; other site
216591032758	HMMPfam hit to PF00083, Sugar (and other) transporter, score 4.9e-39
216591032759	12 probable transmembrane helices predicted for BCAS0227 by TMHMM2.0 at aa 34-56, 71-93, 106-128, 138-160, 173-195, 205-227, 264-286, 301-323, 330-352, 362-384, 391-413 and 423-442
216591032760	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4e-30
216591032761	PS00216 Sugar transport proteins signature 1.
216591032762	PS00217 Sugar transport proteins signature 2.
216591032763	Topoisomerase IB [DNA replication, recombination, and repair]; Region: COG3569
216591032764	DNA topoisomerase IB, C-terminal catalytic domain. Topoisomerase I promotes the relaxation of both positive and negative DNA superhelical tension by introducing a transient single-stranded break in duplex DNA. This function is vital for the processes of...; Region: Topo_IB_C; cd00659
216591032765	active site
216591032766	DNA binding site [nucleotide binding]
216591032767	Int/Topo IB signature motif; other site
216591032768	catalytic residues [active]
216591032769	Periplasmic binding domain of ABC-type YtfQ-like transport systems; Region: PBP1_YtfQ_like; cd06309
216591032770	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591032771	putative ligand binding site [chemical binding]; other site
216591032772	1 probable transmembrane helix predicted for BCAS0229 by TMHMM2.0 at aa 7-26
216591032773	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 0.00086
216591032774	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
216591032775	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591032776	Walker A/P-loop; other site
216591032777	ATP binding site [chemical binding]; other site
216591032778	Q-loop/lid; other site
216591032779	ABC transporter signature motif; other site
216591032780	Walker B; other site
216591032781	D-loop; other site
216591032782	H-loop/switch region; other site
216591032783	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591032784	HMMPfam hit to PF00005, ABC transporter, score 7.3e-52
216591032785	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032786	HMMPfam hit to PF00005, ABC transporter, score 2.2e-25
216591032787	PS00211 ABC transporters family signature.
216591032788	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591032789	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591032790	TM-ABC transporter signature motif; other site
216591032791	8 probable transmembrane helices predicted for BCAS0231 by TMHMM2.0 at aa 12-34, 49-68, 75-92, 102-124, 129-151, 166-188, 215-237 and 257-279
216591032792	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 3.4e-49
216591032793	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591032794	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591032795	TM-ABC transporter signature motif; other site
216591032796	9 probable transmembrane helices predicted for BCAS0232 by TMHMM2.0 at aa 15-37, 42-64, 69-88, 95-117, 122-144, 165-187, 218-240, 260-282 and 297-314
216591032797	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.8e-53
216591032798	7TMR-DISM extracellular 2; Region: 7TMR-DISMED2; pfam07696
216591032799	7TM diverse intracellular signalling; Region: 7TMR-DISM_7TM; pfam07695
216591032800	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591032801	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591032802	dimer interface [polypeptide binding]; other site
216591032803	phosphorylation site [posttranslational modification]
216591032804	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591032805	ATP binding site [chemical binding]; other site
216591032806	Mg2+ binding site [ion binding]; other site
216591032807	G-X-G motif; other site
216591032808	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.3e-29
216591032809	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.1e-13
216591032810	7 probable transmembrane helices predicted for BCAS0234 by TMHMM2.0 at aa 176-198, 203-225, 240-259, 271-293, 298-320, 327-344 and 364-386
216591032811	Response regulator receiver domain; Region: Response_reg; pfam00072
216591032812	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591032813	active site
216591032814	phosphorylation site [posttranslational modification]
216591032815	intermolecular recognition site; other site
216591032816	dimerization interface [polypeptide binding]; other site
216591032817	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591032818	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591032819	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 2.1e-12
216591032820	PS00041 Bacterial regulatory proteins, araC family signature.
216591032821	Predicted helix-turn-helix motif with score 1496.000, SD 4.28 at aa 176-197, sequence PALEELARQVGTHEKRLSRVFR
216591032822	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.5e-35
216591032823	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
216591032824	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591032825	trimer interface [polypeptide binding]; other site
216591032826	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591032827	trimer interface [polypeptide binding]; other site
216591032828	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
216591032829	trimer interface [polypeptide binding]; other site
216591032830	YadA-like C-terminal region; Region: YadA; pfam03895
216591032831	HMMPfam hit to PF05658, Hep_Hag, score 0.0022
216591032832	HMMPfam hit to PF05658, Hep_Hag, score 7.1e-06
216591032833	HMMPfam hit to PF05658, Hep_Hag, score 0.45
216591032834	HMMPfam hit to PF05658, Hep_Hag, score 0.012
216591032835	HMMPfam hit to PF05658, Hep_Hag, score 0.0019
216591032836	HMMPfam hit to PF05658, Hep_Hag, score 0.0017
216591032837	HMMPfam hit to PF05658, Hep_Hag, score 0.0009
216591032838	HMMPfam hit to PF05658, Hep_Hag, score 0.00012
216591032839	HMMPfam hit to PF05658, Hep_Hag, score 6.8e-06
216591032840	HMMPfam hit to PF05658, Hep_Hag, score 0.00041
216591032841	PS00012 Phosphopantetheine attachment site.
216591032842	HMMPfam hit to PF05658, Hep_Hag, score 0.028
216591032843	HMMPfam hit to PF05658, Hep_Hag, score 0.00075
216591032844	HMMPfam hit to PF05658, Hep_Hag, score 1
216591032845	HMMPfam hit to PF05662, Haemagglutinin, score 1.4e-07
216591032846	HMMPfam hit to PF05658, Hep_Hag, score 1.6e-05
216591032847	HMMPfam hit to PF05662, Haemagglutinin, score 7.2e-06
216591032848	HMMPfam hit to PF05658, Hep_Hag, score 0.00098
216591032849	HMMPfam hit to PF05658, Hep_Hag, score 0.089
216591032850	HMMPfam hit to PF05658, Hep_Hag, score 0.0022
216591032851	HMMPfam hit to PF05658, Hep_Hag, score 0.00073
216591032852	HMMPfam hit to PF05662, Haemagglutinin, score 2.6e-06
216591032853	HMMPfam hit to PF05658, Hep_Hag, score 0.016
216591032854	HMMPfam hit to PF05658, Hep_Hag, score 7.1e-07
216591032855	HMMPfam hit to PF05662, Haemagglutinin, score 4.5e-06
216591032856	HMMPfam hit to PF03895, YadA-like C-terminal region, score 9.3e-07
216591032857	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
216591032858	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
216591032859	ligand binding site [chemical binding]; other site
216591032860	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032861	HMMPfam hit to PF00691, OmpA family, score 3.9e-31
216591032862	Protein of unknown function (DUF3820); Region: DUF3820; pfam12843
216591032863	Excinuclease ATPase subunit [DNA replication, recombination, and repair]; Region: UvrA; COG0178
216591032864	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
216591032865	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
216591032866	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591032867	Walker A/P-loop; other site
216591032868	ATP binding site [chemical binding]; other site
216591032869	Q-loop/lid; other site
216591032870	ABC transporter signature motif; other site
216591032871	Walker B; other site
216591032872	D-loop; other site
216591032873	H-loop/switch region; other site
216591032874	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
216591032875	Walker A/P-loop; other site
216591032876	ATP binding site [chemical binding]; other site
216591032877	Q-loop/lid; other site
216591032878	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
216591032879	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
216591032880	HMMPfam hit to PF00005, ABC transporter, score 2.4e-08
216591032881	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032882	HMMPfam hit to PF00005, ABC transporter, score 5.7e-14
216591032883	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032884	PS00211 ABC transporters family signature.
216591032885	HMMPfam hit to PF00005, ABC transporter, score 1.1e-09
216591032886	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032887	PS00211 ABC transporters family signature.
216591032888	HMMPfam hit to PF00005, ABC transporter, score 1.9e-18
216591032889	PS00017 ATP/GTP-binding site motif A (P-loop).
216591032890	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032891	PS00190 Cytochrome c family heme-binding site signature.
216591032892	PS00211 ABC transporters family signature.
216591032893	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591032894	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591032895	substrate binding pocket [chemical binding]; other site
216591032896	membrane-bound complex binding site; other site
216591032897	hinge residues; other site
216591032898	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 3.1e-45
216591032899	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
216591032900	Sodium:dicarboxylate symporter family; Region: SDF; cl00573
216591032901	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 9.4e-103
216591032902	8 probable transmembrane helices predicted for BCAS0241 by TMHMM2.0 at aa 7-29, 56-78, 85-107, 154-171, 192-214, 234-256, 318-340 and 355-377
216591032903	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
216591032904	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591032905	substrate binding pocket [chemical binding]; other site
216591032906	membrane-bound complex binding site; other site
216591032907	hinge residues; other site
216591032908	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
216591032909	HMMPfam hit to PF01165, Ribosomal protein S21, score 2.2e-23
216591032910	Chromate resistance exported protein; Region: Chrome_Resist; pfam09828
216591032911	Chromate transport protein ChrA [Inorganic ion transport and metabolism]; Region: ChrA; COG2059
216591032912	chromate transporter, chromate ion transporter (CHR) family; Region: 2A51; TIGR00937
216591032913	Chromate transporter; Region: Chromate_transp; pfam02417
216591032914	HMMPfam hit to PF02417, Chromate transporter, score 2.6e-77
216591032915	12 probable transmembrane helices predicted for BCAS0249 by TMHMM2.0 at aa 15-37, 56-78, 82-104, 111-133, 148-180, 193-211, 226-248, 261-283, 288-310, 319-341, 346-365 and 372-389
216591032916	HMMPfam hit to PF02417, Chromate transporter, score 9.3e-12
216591032917	Uncharacterized conserved protein [Function unknown]; Region: COG4275
216591032918	Domain of unknown function (DUF4382); Region: DUF4382; pfam14321
216591032919	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032920	DJ-1 family protein; Region: not_thiJ; TIGR01383
216591032921	Putative amidotransferase; Region: DUF4066; pfam13278
216591032922	conserved cys residue [active]
216591032923	HMMPfam hit to PF01965, DJ-1/PfpI family, score 0.0033
216591032924	2-dehydropantoate 2-reductase; Provisional; Region: PRK12921
216591032925	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
216591032926	Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546
216591032927	HMMPfam hit to PF08546, Ketopantoate reductase PanE/ApbA C terminal, score 1e-14
216591032928	HMMPfam hit to PF02558, Ketopantoate reductase PanE/ApbA, score 2.9e-35
216591032929	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591032930	Major Facilitator Superfamily; Region: MFS_1; pfam07690
216591032931	putative substrate translocation pore; other site
216591032932	10 probable transmembrane helices predicted for BCAS0254 by TMHMM2.0 at aa 21-43, 53-75, 95-117, 175-197, 218-240, 255-277, 284-306, 311-333, 346-368 and 372-394
216591032933	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.2e-29
216591032934	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032935	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591032936	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591032937	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591032938	dimerization interface [polypeptide binding]; other site
216591032939	substrate binding pocket [chemical binding]; other site
216591032940	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.8e-20
216591032941	Predicted helix-turn-helix motif with score 1216.000, SD 3.33 at aa 30-51, sequence GSFAGAAAELHVTHWAVGKQIR
216591032942	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.5e-42
216591032943	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591032944	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591032945	eyelet of channel; other site
216591032946	trimer interface [polypeptide binding]; other site
216591032947	HMMPfam hit to PF00267, Gram-negative porin, score 0.00012
216591032948	1 probable transmembrane helix predicted for BCAS0256 by TMHMM2.0 at aa 7-29
216591032949	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591032950	Coenzyme A binding pocket [chemical binding]; other site
216591032951	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.7e-10
216591032952	phosphonate utilization associated transcriptional regulator; Region: phnR_burk; TIGR03338
216591032953	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591032954	DNA-binding site [nucleotide binding]; DNA binding site
216591032955	FCD domain; Region: FCD; pfam07729
216591032956	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 2.7e-17
216591032957	HMMPfam hit to PF07729, FCD domain, score 1.9e-13
216591032958	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
216591032959	Sodium:dicarboxylate symporter family; Region: SDF; pfam00375
216591032960	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 4.4e-63
216591032961	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591032962	9 probable transmembrane helices predicted for BCAS0259 by TMHMM2.0 at aa 15-37, 42-64, 79-101, 137-159, 184-206, 218-240, 278-295, 316-335 and 345-367
216591032963	RNase II stability modulator; Provisional; Region: PRK10060
216591032964	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
216591032965	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591032966	Coenzyme A binding pocket [chemical binding]; other site
216591032967	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.2e-10
216591032968	Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]; Region: COG3437
216591032969	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591032970	active site
216591032971	phosphorylation site [posttranslational modification]
216591032972	intermolecular recognition site; other site
216591032973	dimerization interface [polypeptide binding]; other site
216591032974	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
216591032975	Zn2+ binding site [ion binding]; other site
216591032976	Mg2+ binding site [ion binding]; other site
216591032977	HMMPfam hit to PF00072, Response regulator receiver domain, score 6.5e-33
216591032978	HMMPfam hit to PF01966, HD domain, score 4.3e-08
216591032979	MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms]; Region: COG3300
216591032980	Bacterial signalling protein N terminal repeat; Region: MHYT; pfam03707
216591032981	Bacterial signalling protein N terminal repeat; Region: MHYT; pfam03707
216591032982	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591032983	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591032984	dimer interface [polypeptide binding]; other site
216591032985	phosphorylation site [posttranslational modification]
216591032986	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591032987	ATP binding site [chemical binding]; other site
216591032988	Mg2+ binding site [ion binding]; other site
216591032989	G-X-G motif; other site
216591032990	7 probable transmembrane helices predicted for BCAS0264 by TMHMM2.0 at aa 10-31, 43-65, 75-97, 109-131, 141-163, 176-198 and 213-235
216591032991	HMMPfam hit to PF03707, Bacterial signalling protein N terminal rep, score 3.9e-19
216591032992	HMMPfam hit to PF03707, Bacterial signalling protein N terminal rep, score 4.5e-16
216591032993	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.1e-08
216591032994	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.9e-40
216591032995	Esterase PHB depolymerase; Region: Esterase_phd; pfam10503
216591032996	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591032997	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591032998	dimer interface [polypeptide binding]; other site
216591032999	phosphorylation site [posttranslational modification]
216591033000	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591033001	ATP binding site [chemical binding]; other site
216591033002	Mg2+ binding site [ion binding]; other site
216591033003	G-X-G motif; other site
216591033004	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 7.6e-13
216591033005	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.9e-29
216591033006	Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain; Region: MPP_GpdQ; cd07402
216591033007	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
216591033008	active site
216591033009	metal binding site [ion binding]; metal-binding site
216591033010	hexamer interface [polypeptide binding]; other site
216591033011	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 8.1e-20
216591033012	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591033013	substrate binding pocket [chemical binding]; other site
216591033014	membrane-bound complex binding site; other site
216591033015	urea carboxylase-associated protein 1; Region: urea_degr_1; TIGR03424
216591033016	urea carboxylase-associated protein 2; Region: urea_degr_2; TIGR03425
216591033017	urea carboxylase-associated protein 1; Region: urea_degr_1; TIGR03424
216591033018	Domain of unknown function (DUF1989); Region: DUF1989; pfam09347
216591033019	urea carboxylase; Region: urea_carbox; TIGR02712
216591033020	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
216591033021	ATP-grasp domain; Region: ATP-grasp_4; cl17255
216591033022	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
216591033023	Allophanate hydrolase subunit 2; Region: AHS2; smart00797
216591033024	Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; cl00896
216591033025	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
216591033026	carboxyltransferase (CT) interaction site; other site
216591033027	biotinylation site [posttranslational modification]; other site
216591033028	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 1.3e-43
216591033029	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 3.8e-72
216591033030	PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
216591033031	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591033032	HMMPfam hit to PF02785, Biotin carboxylase C-terminal domain, score 6.1e-44
216591033033	HMMPfam hit to PF02626, Allophanate hydrolase subunit, score 6e-88
216591033034	HMMPfam hit to PF02682, Allophanate hydrolase subunit, score 0.0032
216591033035	HMMPfam hit to PF00364, Biotin-requiring enzyme, score 2.7e-11
216591033036	allophanate hydrolase; Provisional; Region: PRK08186
216591033037	Amidase; Region: Amidase; cl11426
216591033038	HMMPfam hit to PF01425, Amidase, score 9.4e-80
216591033039	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033040	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591033041	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591033042	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033043	dimer interface [polypeptide binding]; other site
216591033044	conserved gate region; other site
216591033045	putative PBP binding loops; other site
216591033046	ABC-ATPase subunit interface; other site
216591033047	6 probable transmembrane helices predicted for BCAS0274 by TMHMM2.0 at aa 25-47, 134-156, 169-189, 194-211, 253-275 and 290-312
216591033048	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.2e-15
216591033049	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591033050	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591033051	Walker A/P-loop; other site
216591033052	ATP binding site [chemical binding]; other site
216591033053	Q-loop/lid; other site
216591033054	ABC transporter signature motif; other site
216591033055	Walker B; other site
216591033056	D-loop; other site
216591033057	H-loop/switch region; other site
216591033058	HMMPfam hit to PF00005, ABC transporter, score 3e-59
216591033059	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033060	PS00211 ABC transporters family signature.
216591033061	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
216591033062	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591033063	substrate binding pocket [chemical binding]; other site
216591033064	membrane-bound complex binding site; other site
216591033065	hinge residues; other site
216591033066	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591033067	Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like; Region: ALDH_AAS00426; cd07109
216591033068	NAD(P) binding site [chemical binding]; other site
216591033069	catalytic residues [active]
216591033070	catalytic residues [active]
216591033071	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.4e-203
216591033072	PS00070 Aldehyde dehydrogenases cysteine active site.
216591033073	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591033074	Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]; Region: LeuB; COG0473
216591033075	tartrate dehydrogenase; Region: TTC; TIGR02089
216591033076	HMMPfam hit to PF00180, Isocitrate/isopropylmalate dehydrogenase, score 3.4e-97
216591033077	PS00470 Isocitrate and isopropylmalate dehydrogenases signature.
216591033078	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591033079	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591033080	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591033081	dimerization interface [polypeptide binding]; other site
216591033082	HMMPfam hit to PF03466, LysR substrate binding domain, score 2.6e-35
216591033083	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3e-15
216591033084	PS00044 Bacterial regulatory proteins, lysR family signature.
216591033085	Predicted helix-turn-helix motif with score 1512.000, SD 4.34 at aa 17-38, sequence GSLSRAAQQSHMSLSTASRRIA
216591033086	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591033087	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033088	putative substrate translocation pore; other site
216591033089	12 probable transmembrane helices predicted for BCAS0280 by TMHMM2.0 at aa 31-48, 63-85, 101-120, 125-147, 159-181, 196-213, 257-279, 294-313, 325-344, 348-370, 377-399 and 414-436
216591033090	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.1e-51
216591033091	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033092	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
216591033093	3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084
216591033094	HMMPfam hit to PF03446, NAD binding domain of 6-phosphogluconat, score 2.8e-54
216591033095	DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986
216591033096	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591033097	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
216591033098	dimerization interface [polypeptide binding]; other site
216591033099	substrate binding pocket [chemical binding]; other site
216591033100	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.5e-33
216591033101	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2e-19
216591033102	PS00044 Bacterial regulatory proteins, lysR family signature.
216591033103	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591033104	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033105	putative substrate translocation pore; other site
216591033106	12 probable transmembrane helices predicted for BCAS0284 by TMHMM2.0 at aa 7-28, 43-65, 72-91, 101-123, 130-149, 164-186, 206-228, 243-265, 272-289, 294-316, 329-351 and 356-378
216591033107	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.7e-36
216591033108	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033109	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033110	ATP-grasp domain; Region: ATP-grasp_4; pfam13535
216591033111	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, ATP, score 0.00036
216591033112	HMMPfam hit to PF02655, ATP-grasp domain, score 0.00048
216591033113	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
216591033114	9 probable transmembrane helices predicted for BCAS0286 by TMHMM2.0 at aa 7-26, 30-52, 64-86, 96-118, 123-145, 160-182, 195-217, 222-244 and 264-286
216591033115	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033116	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033117	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591033118	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591033119	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591033120	dimerization interface [polypeptide binding]; other site
216591033121	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.6e-18
216591033122	Predicted helix-turn-helix motif with score 1116.000, SD 2.99 at aa 16-37, sequence GSALRAAERLGCTQSNVTARLR
216591033123	PS00044 Bacterial regulatory proteins, lysR family signature.
216591033124	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.7e-31
216591033125	1 probable transmembrane helix predicted for BCAS0287 by TMHMM2.0 at aa 211-233
216591033126	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033127	hypothetical protein; Provisional; Region: PRK07206
216591033128	ATP-grasp domain; Region: ATP-grasp_4; pfam13535
216591033129	HMMPfam hit to PF02655, ATP-grasp domain, score 0.0007
216591033130	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, ATP, score 0.0018
216591033131	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033132	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591033133	putative substrate translocation pore; other site
216591033134	14 probable transmembrane helices predicted for BCAS0289 by TMHMM2.0 at aa 28-50, 65-87, 99-121, 125-147, 159-181, 186-205, 225-244, 249-268, 289-308, 318-340, 347-369, 384-406, 426-448 and 452-469
216591033135	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-48
216591033136	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033137	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cl00184
216591033138	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591033139	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591033140	substrate binding pocket [chemical binding]; other site
216591033141	membrane-bound complex binding site; other site
216591033142	hinge residues; other site
216591033143	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.4e-29
216591033144	Inclusion body protein; Region: PixA; pfam12306
216591033145	Inclusion body protein; Region: PixA; pfam12306
216591033146	Predicted membrane protein [Function unknown]; Region: COG2246
216591033147	GtrA-like protein; Region: GtrA; pfam04138
216591033148	HMMPfam hit to PF04138, GtrA-like protein, score 2.6e-06
216591033149	4 probable transmembrane helices predicted for BCAS0294 by TMHMM2.0 at aa 12-34, 44-66, 73-92 and 102-124
216591033150	Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187
216591033151	Ligand binding site; other site
216591033152	Putative Catalytic site; other site
216591033153	DXD motif; other site
216591033154	2 probable transmembrane helices predicted for BCAS0295 by TMHMM2.0 at aa 240-262 and 272-294
216591033155	HMMPfam hit to PF00535, Glycosyl transferase family, score 4.9e-27
216591033156	Protein of unknown function (DUF2029); Region: DUF2029; pfam09594
216591033157	8 probable transmembrane helices predicted for BCAS0296 by TMHMM2.0 at aa 39-61, 129-151, 163-185, 205-227, 234-256, 296-318, 325-343 and 386-408
216591033158	Protein of unknown function (DUF2029); Region: DUF2029; pfam09594
216591033159	8 probable transmembrane helices predicted for BCAS0297 by TMHMM2.0 at aa 24-46, 114-136, 157-179, 199-221, 228-250, 284-306, 319-336 and 385-402
216591033160	HMMPfam hit to PF04964, Flp/Fap pilin component, score 2.5e-18
216591033161	1 probable transmembrane helix predicted for BCAS0298 by TMHMM2.0 at aa 21-43
216591033162	Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]; Region: Flp; COG3847
216591033163	HMMPfam hit to PF04964, Flp/Fap pilin component, score 2.1e-20
216591033164	1 probable transmembrane helix predicted for BCAS0299 by TMHMM2.0 at aa 20-42
216591033165	Flp/Fap pilin component; Region: Flp_Fap; pfam04964
216591033166	HMMPfam hit to PF04964, Flp/Fap pilin component, score 3e-09
216591033167	2 probable transmembrane helices predicted for BCAS0300 by TMHMM2.0 at aa 20-39 and 49-71
216591033168	Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: CpaA; COG4960
216591033169	5 probable transmembrane helices predicted for BCAS0301 by TMHMM2.0 at aa 4-23, 35-53, 57-79, 99-121 and 154-176
216591033170	HMMPfam hit to PF01478, Type IV leader peptidase family, score 1.5e-17
216591033171	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033172	Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cl17190
216591033173	active site
216591033174	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033175	Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]; Region: CpaB; COG3745
216591033176	SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; Region: SAF_CpaB_FlgA_like; cd11614
216591033177	1 probable transmembrane helix predicted for BCAS0303 by TMHMM2.0 at aa 7-29
216591033178	HMMPfam hit to PF06981, Flp pilus assembly protein CpaB, score 5.7e-56
216591033179	Pilus formation protein N terminal region; Region: T2SS-T3SS_pil_N; pfam13629
216591033180	Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]; Region: CpaC; COG4964
216591033181	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
216591033182	1 probable transmembrane helix predicted for BCAS0304 by TMHMM2.0 at aa 17-39
216591033183	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 5.5e-08
216591033184	HMMPfam hit to PF00263, Bacterial type II and III secretion system p, score 5.3e-65
216591033185	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033186	Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961
216591033187	Putative Flp pilus-assembly TadE/G-like; Region: Tad; pfam13400
216591033188	1 probable transmembrane helix predicted for BCAS0306 by TMHMM2.0 at aa 21-43
216591033189	Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961
216591033190	TadE-like protein; Region: TadE; pfam07811
216591033191	HMMPfam hit to PF07811, TadE-like protein, score 1.2e-14
216591033192	1 probable transmembrane helix predicted for BCAS0307 by TMHMM2.0 at aa 13-35
216591033193	Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961
216591033194	TadE-like protein; Region: TadE; pfam07811
216591033195	HMMPfam hit to PF07811, TadE-like protein, score 7e-13
216591033196	1 probable transmembrane helix predicted for BCAS0308 by TMHMM2.0 at aa 17-39
216591033197	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033198	Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]; Region: CpaE; COG4963
216591033199	This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains...; Region: CpaE_like; cd03111
216591033200	This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains...; Region: CpaE_like; cd03111
216591033201	PS00237 G-protein coupled receptors signature.
216591033202	Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]; Region: CpaF; COG4962
216591033203	Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to...; Region: VirB11-like_ATPase; cd01130
216591033204	ATP binding site [chemical binding]; other site
216591033205	Walker A motif; other site
216591033206	hexamer interface [polypeptide binding]; other site
216591033207	Walker B motif; other site
216591033208	HMMPfam hit to PF00437, Type II/IV secretion system protein, score 1.3e-116
216591033209	PS00227 Tubulin subunits alpha, beta, and gamma signature.
216591033210	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033211	Flp pilus assembly protein TadB [Intracellular trafficking and secretion]; Region: TadB; COG4965
216591033212	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
216591033213	5 probable transmembrane helices predicted for BCAS0311 by TMHMM2.0 at aa 5-27, 94-116, 121-140, 266-285 and 300-317
216591033214	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 2.2e-15
216591033215	Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: TadC; COG2064
216591033216	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
216591033217	4 probable transmembrane helices predicted for BCAS0312 by TMHMM2.0 at aa 10-32, 104-126, 136-158 and 287-309
216591033218	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 9.2e-19
216591033219	Putative MetA-pathway of phenol degradation; Region: Phenol_MetA_deg; cl01768
216591033220	Flavin reductase like domain; Region: Flavin_Reduct; smart00903
216591033221	HMMPfam hit to PF01613, Flavin reductase like domain, score 1.5e-47
216591033222	NADP oxidoreductase coenzyme F420-dependent; Region: F420_oxidored; cl17232
216591033223	short chain dehydrogenase; Provisional; Region: PRK08265
216591033224	classical (c) SDRs; Region: SDR_c; cd05233
216591033225	NAD(P) binding site [chemical binding]; other site
216591033226	active site
216591033227	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0025
216591033228	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.3e-20
216591033229	PS00061 Short-chain dehydrogenases/reductases family signature.
216591033230	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
216591033231	BAAT / Acyl-CoA thioester hydrolase C terminal; Region: BAAT_C; pfam08840
216591033232	SnoaL-like domain; Region: SnoaL_2; pfam12680
216591033233	HMMPfam hit to PF07366, SnoaL-like polyketide cyclase, score 0.00083
216591033234	HMMPfam hit to PF01738, Dienelactone hydrolase family, score 1.4e-57
216591033235	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591033236	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591033237	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00081
216591033238	Predicted helix-turn-helix motif with score 1883.000, SD 5.60 at aa 248-269, sequence LTIERLADLAGVSPSTLFAGFR
216591033239	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.6e-05
216591033240	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]; Region: CoxL; COG1529
216591033241	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
216591033242	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591033243	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
216591033244	4-hydroxybenzoyl-CoA reductase, gamma subunit; Region: 4hydroxCoAred; TIGR03193
216591033245	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591033246	catalytic loop [active]
216591033247	iron binding site [ion binding]; other site
216591033248	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
216591033249	HMMPfam hit to PF01799, [2Fe-2S] binding domain, score 3.5e-28
216591033250	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 2.7e-08
216591033251	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591033252	Autotransporter beta-domain; Region: Autotransporter; pfam03797
216591033253	1 probable transmembrane helix predicted for BCAS0321 by TMHMM2.0 at aa 21-43
216591033254	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033255	HMMPfam hit to PF05594, Haemagluttinin repeat, score 2
216591033256	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 99
216591033257	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 27
216591033258	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 79
216591033259	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 32
216591033260	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 50
216591033261	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 56
216591033262	HMMPfam hit to PF02415, Chlamydia polymorphic membrane protei, score 28
216591033263	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 22
216591033264	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 50
216591033265	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 65
216591033266	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 65
216591033267	PS00583 pfkB family of carbohydrate kinases signature 1.
216591033268	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 65
216591033269	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 64
216591033270	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033271	HMMPfam hit to PF03797, Autotransporter beta-domain, score 1.1e-39
216591033272	PS00190 Cytochrome c family heme-binding site signature.
216591033273	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591033274	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591033275	DNA binding site [nucleotide binding]
216591033276	domain linker motif; other site
216591033277	Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily; Region: PBP1_LacI_sugar_binding_like; cd06267
216591033278	dimerization interface [polypeptide binding]; other site
216591033279	ligand binding site [chemical binding]; other site
216591033280	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 1e-07
216591033281	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 2.5e-06
216591033282	Predicted helix-turn-helix motif with score 1976.000, SD 5.92 at aa 2-23, sequence VTLAQVAQRANVTAATVSNVLR
216591033283	maltose/maltodextrin transporter ATP-binding protein; Provisional; Region: PRK11000
216591033284	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
216591033285	Walker A/P-loop; other site
216591033286	ATP binding site [chemical binding]; other site
216591033287	Q-loop/lid; other site
216591033288	ABC transporter signature motif; other site
216591033289	Walker B; other site
216591033290	D-loop; other site
216591033291	H-loop/switch region; other site
216591033292	TOBE domain; Region: TOBE_2; pfam08402
216591033293	HMMPfam hit to PF00005, ABC transporter, score 5.4e-53
216591033294	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033295	PS00211 ABC transporters family signature.
216591033296	HMMPfam hit to PF03459, TOBE domain, score 2.8e-06
216591033297	HMMPfam hit to PF08402, TOBE domain, score 1.1e-07
216591033298	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; pfam01547
216591033299	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
216591033300	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 4.8e-35
216591033301	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033302	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033303	dimer interface [polypeptide binding]; other site
216591033304	putative PBP binding loops; other site
216591033305	ABC-ATPase subunit interface; other site
216591033306	6 probable transmembrane helices predicted for BCAS0326 by TMHMM2.0 at aa 31-53, 92-114, 126-145, 172-194, 215-237 and 273-295
216591033307	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.00076
216591033308	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591033309	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
216591033310	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033311	dimer interface [polypeptide binding]; other site
216591033312	conserved gate region; other site
216591033313	putative PBP binding loops; other site
216591033314	ABC-ATPase subunit interface; other site
216591033315	6 probable transmembrane helices predicted for BCAS0327 by TMHMM2.0 at aa 21-43, 76-98, 111-130, 145-167, 188-210 and 245-267
216591033316	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2e-22
216591033317	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591033318	Beta-galactosidase [Carbohydrate transport and metabolism]; Region: LacA; COG1874
216591033319	Beta-galactosidase; Region: Glyco_hydro_42; pfam02449
216591033320	A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain; Region: A4_beta-galactosidase_middle_domain; cd03143
216591033321	Beta-galactosidase C-terminal domain; Region: Glyco_hydro_42C; pfam08533
216591033322	HMMPfam hit to PF02449, Beta-galactosidase, score 1.1e-188
216591033323	HMMPfam hit to PF08532, Beta-galactosidase trimerisation doma, score 1.4e-46
216591033324	HMMPfam hit to PF08533, Beta-galactosidase C-terminal domain, score 8.4e-09
216591033325	sugar efflux transporter; Region: 2A0120; TIGR00899
216591033326	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033327	11 probable transmembrane helices predicted for BCAS0329 by TMHMM2.0 at aa 21-43, 53-75, 87-109, 114-136, 149-171, 175-197, 239-261, 271-291, 322-344, 359-381 and 388-410
216591033328	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2e-26
216591033329	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033330	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033331	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033332	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033333	Glycosyl hydrolase family 53; Region: Glyco_hydro_53; pfam07745
216591033334	HMMPfam hit to PF07745, Glycosyl hydrolase family, score 2.8e-158
216591033335	1 probable transmembrane helix predicted for BCAS0330 by TMHMM2.0 at aa 13-35
216591033336	2 probable transmembrane helices predicted for BCAS0331 by TMHMM2.0 at aa 20-42 and 47-64
216591033337	Protein of unknown function DUF72; Region: DUF72; pfam01904
216591033338	HMMPfam hit to PF01904, Protein of unknown function DUF72, score 5.9e-81
216591033339	ferrichrome outer membrane transporter; Provisional; Region: PRK10044
216591033340	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591033341	N-terminal plug; other site
216591033342	ligand-binding site [chemical binding]; other site
216591033343	1 probable transmembrane helix predicted for BCAS0333 by TMHMM2.0 at aa 13-35
216591033344	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 3.1e-20
216591033345	HMMPfam hit to PF00593, TonB dependent receptor, score 2.5e-27
216591033346	Response regulator receiver domain; Region: Response_reg; pfam00072
216591033347	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591033348	active site
216591033349	phosphorylation site [posttranslational modification]
216591033350	intermolecular recognition site; other site
216591033351	dimerization interface [polypeptide binding]; other site
216591033352	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591033353	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591033354	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix pr, score 4.8e-12
216591033355	PS00041 Bacterial regulatory proteins, araC family signature.
216591033356	Predicted helix-turn-helix motif with score 1605.000, SD 4.65 at aa 171-192, sequence PTVEELARAVGTHEKRLSRAFR
216591033357	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.8e-35
216591033358	YadA-like, left-handed beta-roll; Region: LbR_YadA-like; cd12820
216591033359	trimer interface [polypeptide binding]; other site
216591033360	Autotransporter adhesin [Intracellular trafficking and secretion / Extracellular structures]; Region: Hia; COG5295
216591033361	YadA-like C-terminal region; Region: YadA; pfam03895
216591033362	1 probable transmembrane helix predicted for BCAS0335 by TMHMM2.0 at aa 7-26
216591033363	HMMPfam hit to PF05658, Hep_Hag, score 1.9
216591033364	HMMPfam hit to PF05658, Hep_Hag, score 0.0094
216591033365	HMMPfam hit to PF05658, Hep_Hag, score 0.09
216591033366	HMMPfam hit to PF05658, Hep_Hag, score 0.00013
216591033367	HMMPfam hit to PF05658, Hep_Hag, score 0.0064
216591033368	HMMPfam hit to PF05662, Haemagglutinin, score 3e-06
216591033369	HMMPfam hit to PF05662, Haemagglutinin, score 0.00011
216591033370	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591033371	HMMPfam hit to PF05662, Haemagglutinin, score 9.5e-06
216591033372	HMMPfam hit to PF05662, Haemagglutinin, score 0.00013
216591033373	HMMPfam hit to PF05662, Haemagglutinin, score 0.00016
216591033374	HMMPfam hit to PF05662, Haemagglutinin, score 7e-05
216591033375	HMMPfam hit to PF05662, Haemagglutinin, score 3.6e-07
216591033376	HMMPfam hit to PF05658, Hep_Hag, score 0.003
216591033377	HMMPfam hit to PF05662, Haemagglutinin, score 6.6e-07
216591033378	HMMPfam hit to PF03895, YadA-like C-terminal region, score 1.3e-30
216591033379	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
216591033380	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cd06587
216591033381	active site
216591033382	metal binding site [ion binding]; metal-binding site
216591033383	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 4.1e-12
216591033384	AAA domain; Region: AAA_17; pfam13207
216591033385	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033386	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033387	Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily; Region: HTH_MerR-like_sg3; cd01282
216591033388	transcriptional regulator MerD; Provisional; Region: PRK13749
216591033389	DNA binding residues [nucleotide binding]
216591033390	putative dimer interface [polypeptide binding]; other site
216591033391	HMMPfam hit to PF00376, MerR family regulatory protein, score 4.4e-11
216591033392	Predicted helix-turn-helix motif with score 1280.000, SD 3.55 at aa 10-31, sequence LTIGKLAQLTGASVRSIRHYDE
216591033393	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
216591033394	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
216591033395	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 2.2e-13
216591033396	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591033397	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591033398	Walker A/P-loop; other site
216591033399	ATP binding site [chemical binding]; other site
216591033400	Q-loop/lid; other site
216591033401	ABC transporter signature motif; other site
216591033402	Walker B; other site
216591033403	D-loop; other site
216591033404	H-loop/switch region; other site
216591033405	HMMPfam hit to PF00005, ABC transporter, score 2.2e-56
216591033406	PS00211 ABC transporters family signature.
216591033407	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033408	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591033409	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033410	dimer interface [polypeptide binding]; other site
216591033411	conserved gate region; other site
216591033412	putative PBP binding loops; other site
216591033413	ABC-ATPase subunit interface; other site
216591033414	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.5e-22
216591033415	6 probable transmembrane helices predicted for BCAS0341 by TMHMM2.0 at aa 28-50, 87-109, 121-143, 148-167, 209-231 and 241-258
216591033416	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591033417	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591033418	substrate binding pocket [chemical binding]; other site
216591033419	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
216591033420	membrane-bound complex binding site; other site
216591033421	benzoate transport; Region: 2A0115; TIGR00895
216591033422	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033423	putative substrate translocation pore; other site
216591033424	HMMPfam hit to PF00083, Sugar (and other) transporter, score 5.8e-08
216591033425	12 probable transmembrane helices predicted for BCAS0343 by TMHMM2.0 at aa 39-61, 74-96, 109-131, 135-154, 167-189, 199-218, 276-298, 313-335, 347-366, 371-393, 414-433 and 443-460
216591033426	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.4e-31
216591033427	PS00217 Sugar transport proteins signature 2.
216591033428	FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; Region: FMN_nitrolo; TIGR03860
216591033429	nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2; Region: Nitrilotriacetate_monoxgenase; cd01095
216591033430	active site
216591033431	non-prolyl cis peptide bond; other site
216591033432	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591033433	sulfur acquisition oxidoreductase, SfnB family; Region: sulfur_SfnB; TIGR04022
216591033434	active site
216591033435	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 1.2e-06
216591033436	sulfur acquisition oxidoreductase, SfnB family; Region: sulfur_SfnB; TIGR04022
216591033437	Dibenzothiophene (DBT) desulfurization enzyme C; Region: DszC; cd01163
216591033438	Flavin binding site [chemical binding]; other site
216591033439	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal doma, score 2e-06
216591033440	PS00435 Peroxidases proximal heme-ligand signature.
216591033441	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 1.6e-05
216591033442	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 0.0017
216591033443	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 4.1e-31
216591033444	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591033445	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033446	dimer interface [polypeptide binding]; other site
216591033447	conserved gate region; other site
216591033448	putative PBP binding loops; other site
216591033449	ABC-ATPase subunit interface; other site
216591033450	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.1e-15
216591033451	7 probable transmembrane helices predicted for BCAS0347 by TMHMM2.0 at aa 26-48, 87-109, 122-144, 148-168, 189-208, 212-234 and 241-263
216591033452	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
216591033453	NMT1-like family; Region: NMT1_2; pfam13379
216591033454	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
216591033455	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
216591033456	Walker A/P-loop; other site
216591033457	ATP binding site [chemical binding]; other site
216591033458	Q-loop/lid; other site
216591033459	ABC transporter signature motif; other site
216591033460	Walker B; other site
216591033461	D-loop; other site
216591033462	H-loop/switch region; other site
216591033463	HMMPfam hit to PF00005, ABC transporter, score 4.9e-63
216591033464	PS00211 ABC transporters family signature.
216591033465	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033466	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
216591033467	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591033468	Uncharacterized conserved protein [Function unknown]; Region: COG2128
216591033469	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
216591033470	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 7.4e-07
216591033471	Cupin; Region: Cupin_6; pfam12852
216591033472	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591033473	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591033474	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3e-08
216591033475	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.0019
216591033476	galactose mutarotase_like; Region: galactose_mutarotase_like; cd09019
216591033477	active site
216591033478	catalytic residues [active]
216591033479	HMMPfam hit to PF01263, Aldose 1-epimerase, score 6.6e-111
216591033480	PS00545 Aldose 1-epimerase putative active site.
216591033481	Ligand-binding domain of DNA transcription repressor specific for xylose (XylR); Region: PBP1_XylR; cd01543
216591033482	putative dimerization interface [polypeptide binding]; other site
216591033483	putative ligand binding site [chemical binding]; other site
216591033484	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591033485	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591033486	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591033487	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 4.7e-07
216591033488	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 9.9e-06
216591033489	Predicted helix-turn-helix motif with score 1388.000, SD 3.91 at aa 308-329, sequence IKTEQVADYVGVSRSLLEEHFR
216591033490	xylose isomerase; Provisional; Region: PRK05474
216591033491	xylose isomerase; Region: xylose_isom_A; TIGR02630
216591033492	HMMPfam hit to PF01261, Xylose isomerase-like TIM barrel, score 4.3e-10
216591033493	PS00173 Xylose isomerase signature 2.
216591033494	PS00172 Xylose isomerase signature 1.
216591033495	D-xylose ABC transporter, substrate-binding protein; Region: xylF; TIGR02634
216591033496	Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_xylose_binding; cd01538
216591033497	putative ligand binding site [chemical binding]; other site
216591033498	1 probable transmembrane helix predicted for BCAS0356 by TMHMM2.0 at aa 9-31
216591033499	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 0.00022
216591033500	xylose transporter ATP-binding subunit; Provisional; Region: PRK13549
216591033501	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591033502	Walker A/P-loop; other site
216591033503	ATP binding site [chemical binding]; other site
216591033504	Q-loop/lid; other site
216591033505	ABC transporter signature motif; other site
216591033506	Walker B; other site
216591033507	D-loop; other site
216591033508	H-loop/switch region; other site
216591033509	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591033510	HMMPfam hit to PF00005, ABC transporter, score 4.2e-54
216591033511	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033512	HMMPfam hit to PF00005, ABC transporter, score 4.2e-22
216591033513	PS00211 ABC transporters family signature.
216591033514	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591033515	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591033516	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591033517	TM-ABC transporter signature motif; other site
216591033518	9 probable transmembrane helices predicted for BCAS0358 by TMHMM2.0 at aa 35-57, 78-100, 115-137, 144-166, 181-203, 216-238, 243-265, 295-317 and 373-390
216591033519	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 2e-57
216591033520	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
216591033521	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
216591033522	N-terminal plug; other site
216591033523	ligand-binding site [chemical binding]; other site
216591033524	HMMPfam hit to PF00593, TonB dependent receptor, score 1.1e-26
216591033525	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 1.8e-16
216591033526	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591033527	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591033528	The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold; Region: PBP2_DntR_NahR_LinR_like; cd08459
216591033529	substrate binding pocket [chemical binding]; other site
216591033530	dimerization interface [polypeptide binding]; other site
216591033531	HMMPfam hit to PF03466, LysR substrate binding domain, score 1e-19
216591033532	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.2e-15
216591033533	PS00044 Bacterial regulatory proteins, lysR family signature.
216591033534	Predicted helix-turn-helix motif with score 2048.000, SD 6.16 at aa 27-48, sequence RSVTRVAEQLGQSQPTVSIWLG
216591033535	2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522
216591033536	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
216591033537	Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546
216591033538	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 7.1e-05
216591033539	HMMPfam hit to PF02558, Ketopantoate reductase PanE/ApbA, score 1.3e-51
216591033540	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033541	HMMPfam hit to PF08546, Ketopantoate reductase PanE/ApbA C ter, score 8.5e-46
216591033542	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033543	Glyoxalase-like domain; Region: Glyoxalase_2; pfam12681
216591033544	HMMPfam hit to PF00903, Glyoxalase/Bleomycin resistance protein/Di, score 0.0013
216591033545	(R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway.  The structure of the monomer includes a five-strand antiparallel...; Region: R_hydratase_like; cd03441
216591033546	active site
216591033547	catalytic site [active]
216591033548	PS00061 Short-chain dehydrogenases/reductases family signature.
216591033549	HMMPfam hit to PF01575, MaoC like domain, score 1.2e-09
216591033550	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591033551	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
216591033552	CoA-transferase family III; Region: CoA_transf_3; pfam02515
216591033553	HMMPfam hit to PF02515, CoA-transferase family III, score 4.3e-54
216591033554	shikimate 5-dehydrogenase; Reviewed; Region: aroE; PRK00258
216591033555	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
216591033556	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
216591033557	shikimate binding site; other site
216591033558	NAD(P) binding site [chemical binding]; other site
216591033559	HMMPfam hit to PF08501, Shikimate dehydrogenase substrate bind, score 2.9e-25
216591033560	HMMPfam hit to PF01488, Shikimate / quinate 5-dehydrogenase, score 2.1e-22
216591033561	citrate-proton symporter; Provisional; Region: PRK15075
216591033562	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033563	putative substrate translocation pore; other site
216591033564	HMMPfam hit to PF00083, Sugar (and other) transporter, score 3.5e-50
216591033565	11 probable transmembrane helices predicted for BCAS0367 by TMHMM2.0 at aa 60-82, 94-116, 126-148, 169-186, 190-212, 244-266, 281-303, 310-332, 342-364, 371-393 and 408-425
216591033566	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033567	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5.2e-23
216591033568	PS00216 Sugar transport proteins signature 1.
216591033569	PS00217 Sugar transport proteins signature 2.
216591033570	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033571	PS00216 Sugar transport proteins signature 1.
216591033572	tricarballylate utilization protein B; Provisional; Region: PRK15033
216591033573	6 probable transmembrane helices predicted for BCAS0368 by TMHMM2.0 at aa 134-156, 171-193, 251-273, 283-305, 326-343 and 348-370
216591033574	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.0019
216591033575	tricarballylate dehydrogenase; Validated; Region: PRK08274
216591033576	HMMPfam hit to PF00890, FAD binding domain, score 1.1e-10
216591033577	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 2.6e-06
216591033578	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591033579	The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold; Region: PBP2_Nac; cd08433
216591033580	putative dimerization interface [polypeptide binding]; other site
216591033581	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.6e-33
216591033582	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7.7e-19
216591033583	PS00044 Bacterial regulatory proteins, lysR family signature.
216591033584	Predicted helix-turn-helix motif with score 1323.000, SD 3.69 at aa 16-37, sequence GSMGKAALELGVVTSALSQQIS
216591033585	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591033586	Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]; Region: COG3970
216591033587	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
216591033588	dihydroxy-acid dehydratase; Provisional; Region: PRK13017
216591033589	HMMPfam hit to PF00920, Dehydratase family, score 2.3e-218
216591033590	PS00061 Short-chain dehydrogenases/reductases family signature.
216591033591	PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1.
216591033592	Transcriptional regulators [Transcription]; Region: PurR; COG1609
216591033593	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
216591033594	DNA binding site [nucleotide binding]
216591033595	domain linker motif; other site
216591033596	Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR; cd01575
216591033597	putative dimerization interface [polypeptide binding]; other site
216591033598	putative ligand binding site [chemical binding]; other site
216591033599	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 4.8e-11
216591033600	HMMPfam hit to PF00356, Bacterial regulatory proteins, lacI fami, score 6.9e-10
216591033601	PS00435 Peroxidases proximal heme-ligand signature.
216591033602	Predicted helix-turn-helix motif with score 1870.000, SD 5.56 at aa 13-34, sequence PRMSDVARLAGVSKMTVSRVLA
216591033603	PS00356 Bacterial regulatory proteins, lacI family signature.
216591033604	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591033605	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033606	putative substrate translocation pore; other site
216591033607	12 probable transmembrane helices predicted for BCAS0374 by TMHMM2.0 at aa 29-50, 65-87, 94-116, 131-153, 160-182, 197-219, 261-283, 293-315, 327-346, 350-372, 379-401 and 416-438
216591033608	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.3e-39
216591033609	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033610	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033611	Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]; Region: COG0436
216591033612	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
216591033613	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591033614	homodimer interface [polypeptide binding]; other site
216591033615	catalytic residue [active]
216591033616	HMMPfam hit to PF00155, Aminotransferase class I and II, score 5.9e-23
216591033617	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591033618	Transcriptional regulators [Transcription]; Region: GntR; COG1802
216591033619	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591033620	DNA-binding site [nucleotide binding]; DNA binding site
216591033621	FCD domain; Region: FCD; pfam07729
216591033622	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 3.3e-18
216591033623	HMMPfam hit to PF07729, FCD domain, score 1.7e-10
216591033624	Short repeat of unknown function (DUF308); Region: DUF308; cl15828
216591033625	6 probable transmembrane helices predicted for BCAS0377 by TMHMM2.0 at aa 20-39, 43-65, 78-95, 99-121, 128-150 and 160-182
216591033626	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
216591033627	Zn2+ binding site [ion binding]; other site
216591033628	Mg2+ binding site [ion binding]; other site
216591033629	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
216591033630	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591033631	DNA binding residues [nucleotide binding]
216591033632	dimerization interface [polypeptide binding]; other site
216591033633	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 3.8e-14
216591033634	HMMPfam hit to PF04967, HTH DNA binding domain, score 0.0026
216591033635	Predicted helix-turn-helix motif with score 1414.000, SD 4.00 at aa 446-467, sequence ASNKQVAQALAMSPSTVRTHVE
216591033636	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033637	13 probable transmembrane helices predicted for BCAS0379 by TMHMM2.0 at aa 15-37, 82-104, 114-133, 140-162, 172-194, 207-224, 234-251, 276-298, 308-330, 337-359, 369-388, 409-431 and 446-468
216591033638	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-45
216591033639	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591033640	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033641	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 4.6e-09
216591033642	succinic semialdehyde dehydrogenase; Region: PLN02278
216591033643	Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103
216591033644	tetramerization interface [polypeptide binding]; other site
216591033645	NAD(P) binding site [chemical binding]; other site
216591033646	catalytic residues [active]
216591033647	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 7e-220
216591033648	PS00687 Aldehyde dehydrogenases glutamic acid active site.
216591033649	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591033650	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591033651	putative DNA binding site [nucleotide binding]; other site
216591033652	putative Zn2+ binding site [ion binding]; other site
216591033653	AsnC family; Region: AsnC_trans_reg; pfam01037
216591033654	HMMPfam hit to PF01037, AsnC family, score 7.7e-24
216591033655	PS00519 Bacterial regulatory proteins, asnC family signature.
216591033656	Predicted helix-turn-helix motif with score 1117.000, SD 2.99 at aa 29-50, sequence MTNVELADAVGLSPSPCLIRVK
216591033657	hypothetical protein; Provisional; Region: PRK05965
216591033658	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
216591033659	inhibitor-cofactor binding pocket; inhibition site
216591033660	pyridoxal 5'-phosphate binding site [chemical binding]; other site
216591033661	catalytic residue [active]
216591033662	HMMPfam hit to PF00202, Aminotransferase class-III, score 2.1e-93
216591033663	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
216591033664	Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Region: SerA; COG0111
216591033665	Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; Region: GDH_like_2; cd12164
216591033666	putative ligand binding site [chemical binding]; other site
216591033667	NAD binding site [chemical binding]; other site
216591033668	dimerization interface [polypeptide binding]; other site
216591033669	catalytic site [active]
216591033670	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 4.8e-47
216591033671	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591033672	Coenzyme A binding pocket [chemical binding]; other site
216591033673	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 7.9e-15
216591033674	2-haloalkanoic acid dehalogenase, type II; Region: HAD_type_II; TIGR01428
216591033675	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
216591033676	motif II; other site
216591033677	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 8.6e-10
216591033678	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
216591033679	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_17; cd08503
216591033680	2 probable transmembrane helices predicted for BCAS0388 by TMHMM2.0 at aa 32-54 and 514-536
216591033681	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 1.8e-65
216591033682	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
216591033683	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033684	dimer interface [polypeptide binding]; other site
216591033685	conserved gate region; other site
216591033686	putative PBP binding loops; other site
216591033687	ABC-ATPase subunit interface; other site
216591033688	6 probable transmembrane helices predicted for BCAS0389 by TMHMM2.0 at aa 13-35, 104-126, 139-161, 181-198, 243-265 and 285-307
216591033689	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.9e-41
216591033690	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
216591033691	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033692	dimer interface [polypeptide binding]; other site
216591033693	conserved gate region; other site
216591033694	ABC-ATPase subunit interface; other site
216591033695	6 probable transmembrane helices predicted for BCAS0390 by TMHMM2.0 at aa 50-72, 76-95, 116-138, 161-183, 236-258 and 278-300
216591033696	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.7e-32
216591033697	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591033698	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444
216591033699	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591033700	Walker A/P-loop; other site
216591033701	ATP binding site [chemical binding]; other site
216591033702	Q-loop/lid; other site
216591033703	ABC transporter signature motif; other site
216591033704	Walker B; other site
216591033705	D-loop; other site
216591033706	H-loop/switch region; other site
216591033707	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; pfam08352
216591033708	HMMPfam hit to PF00005, ABC transporter, score 5.7e-58
216591033709	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033710	PS00211 ABC transporters family signature.
216591033711	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 1.2e-06
216591033712	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
216591033713	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591033714	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 1.2e-93
216591033715	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591033716	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591033717	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591033718	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 8.2e-05
216591033719	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.00019
216591033720	Protein of unknown function (DUF861); Region: Cupin_3; pfam05899
216591033721	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
216591033722	HMMPfam hit to PF05899, Protein of unknown function (DUF861), score 1.7e-05
216591033723	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
216591033724	hydroxyglutarate oxidase; Provisional; Region: PRK11728
216591033725	1 probable transmembrane helix predicted for BCAS0395 by TMHMM2.0 at aa 15-37
216591033726	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 3e-104
216591033727	PS00237 G-protein coupled receptors signature.
216591033728	Rhodococcus ruber 6-oxolauric acid dehydrogenase-like; Region: ALDH_CddD_SSP0762; cd07138
216591033729	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
216591033730	NAD binding site [chemical binding]; other site
216591033731	catalytic residues [active]
216591033732	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 5.7e-214
216591033733	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033734	PS00070 Aldehyde dehydrogenases cysteine active site.
216591033735	Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473
216591033736	M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666
216591033737	metal binding site [ion binding]; metal-binding site
216591033738	putative dimer interface [polypeptide binding]; other site
216591033739	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 6.7e-63
216591033740	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 2e-07
216591033741	Cache domain; Region: Cache_1; pfam02743
216591033742	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591033743	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591033744	metal binding site [ion binding]; metal-binding site
216591033745	active site
216591033746	I-site; other site
216591033747	HMMPfam hit to PF00990, GGDEF domain, score 1e-58
216591033748	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033749	2 probable transmembrane helices predicted for BCAS0398 by TMHMM2.0 at aa 20-42 and 296-318
216591033750	PS00044 Bacterial regulatory proteins, lysR family signature.
216591033751	citrate-proton symporter; Provisional; Region: PRK15075
216591033752	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591033753	putative substrate translocation pore; other site
216591033754	HMMPfam hit to PF00083, Sugar (and other) transporter, score 1.9e-47
216591033755	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.5e-23
216591033756	10 probable transmembrane helices predicted for BCAS0399 by TMHMM2.0 at aa 53-70, 80-102, 123-145, 207-229, 261-283, 298-320, 327-349, 359-381, 388-410 and 425-442
216591033757	PS00216 Sugar transport proteins signature 1.
216591033758	PS00217 Sugar transport proteins signature 2.
216591033759	PS00216 Sugar transport proteins signature 1.
216591033760	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
216591033761	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
216591033762	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 0.00058
216591033763	Sodium:dicarboxylate symporter family; Region: SDF; cl00573
216591033764	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
216591033765	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 5.6e-129
216591033766	8 probable transmembrane helices predicted for BCAS0401 by TMHMM2.0 at aa 9-28, 43-65, 78-100, 143-165, 186-208, 223-245, 315-337 and 352-374
216591033767	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033768	PS00714 Sodium:dicarboxylate symporter family signature 2.
216591033769	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591033770	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591033771	TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440
216591033772	putative dimerization interface [polypeptide binding]; other site
216591033773	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.5e-53
216591033774	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.7e-24
216591033775	PS00044 Bacterial regulatory proteins, lysR family signature.
216591033776	Predicted helix-turn-helix motif with score 1554.000, SD 4.48 at aa 26-47, sequence GSFRKAADAISLSQPALSRRID
216591033777	Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily; Region: CE4_SF; cl15692
216591033778	1 probable transmembrane helix predicted for BCAS0404 by TMHMM2.0 at aa 7-29
216591033779	Peptidase domain in the S53 family; Region: Peptidases_S53; cd04056
216591033780	active site
216591033781	catalytic triad [active]
216591033782	calcium binding site [ion binding]; other site
216591033783	1 probable transmembrane helix predicted for BCAS0405 by TMHMM2.0 at aa 13-30
216591033784	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
216591033785	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; pfam13505
216591033786	Zinc metalloprotease (elastase) [Amino acid transport and metabolism]; Region: LasB; COG3227
216591033787	Fungalysin/Thermolysin Propeptide Motif; Region: FTP; pfam07504
216591033788	Peptidase M4 family includes thermolysin, protealysin, aureolysin and neutral protease; Region: M4_neutral_protease; cd09597
216591033789	active site
216591033790	Zn binding site [ion binding]; other site
216591033791	HMMPfam hit to PF07504, Fungalysin/Thermolysin Propeptide Moti, score 7.8e-13
216591033792	HMMPfam hit to PF01447, Thermolysin metallopeptidase, catalyti, score 4.3e-09
216591033793	PS00201 Flavodoxin signature.
216591033794	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591033795	HMMPfam hit to PF02868, Thermolysin metallopeptidase, alpha-he, score 5.9e-38
216591033796	3 probable transmembrane helices predicted for BCAS0412 by TMHMM2.0 at aa 9-31, 41-63 and 83-105
216591033797	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033798	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591033799	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591033800	substrate binding pocket [chemical binding]; other site
216591033801	membrane-bound complex binding site; other site
216591033802	Protein of unknown function (DUF3088); Region: DUF3088; pfam11287
216591033803	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591033804	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591033805	trimer interface [polypeptide binding]; other site
216591033806	eyelet of channel; other site
216591033807	HMMPfam hit to PF00267, Gram-negative porin, score 5e-06
216591033808	Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199
216591033809	Moco binding site; other site
216591033810	metal coordination site [ion binding]; other site
216591033811	HMMPfam hit to PF00174, Oxidoreductase molybdopterin binding d, score 5.6e-69
216591033812	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033813	HMMPfam hit to PF03404, Mo-co oxidoreductase dimerisation doma, score 1.4e-19
216591033814	Cytochrome c; Region: Cytochrom_C; cl11414
216591033815	HMMPfam hit to PF00034, Cytochrome c, score 0.0011
216591033816	PS00190 Cytochrome c family heme-binding site signature.
216591033817	Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094
216591033818	active site
216591033819	dimethyl sulfone monooxygenase SfnG; Region: LLM_DMSO2_sfnG; TIGR04021
216591033820	dimer interface [polypeptide binding]; other site
216591033821	non-prolyl cis peptide bond; other site
216591033822	insertion regions; other site
216591033823	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 4.4e-06
216591033824	Dibenzothiophene (DBT) desulfurization enzyme C; Region: DszC; cd01163
216591033825	sulfur acquisition oxidoreductase, SfnB family; Region: sulfur_SfnB; TIGR04022
216591033826	Flavin binding site [chemical binding]; other site
216591033827	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 7e-06
216591033828	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
216591033829	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033830	putative PBP binding loops; other site
216591033831	dimer interface [polypeptide binding]; other site
216591033832	ABC-ATPase subunit interface; other site
216591033833	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.2e-07
216591033834	8 probable transmembrane helices predicted for BCAS0420 by TMHMM2.0 at aa 45-67, 71-93, 100-122, 142-164, 169-187, 202-224, 229-251 and 261-280
216591033835	CDS interrupted by IS element after codon 171. Similar to Pseudomonas putida ABC transporter, ATP-binding protein SWALL:Q88RF9 (EMBL:AE016774) (287 aa) fasta scores: E(): 1.4e-66, 75.68% id in 255 aa; has 20 amino acid N terminal truncation. Similar to Synechococcus sp. nitrate transport ATP-binding protein NrtD nrtD SWALL:NRTD_SYNP7 (SWALL:P38046) (274 aa) fasta scores: E(): 1.4e-28, 47.26% id in 201 aa; homology does not extend to N and C termini
216591033836	HMMPfam hit to PF00005, ABC transporter, score 1.9e-55
216591033837	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591033838	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591033839	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591033840	HMMPfam hit to PF01548, Transposase, score 2.9e-12
216591033841	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 2e-19
216591033842	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033843	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715
216591033844	NMT1-like family; Region: NMT1_2; pfam13379
216591033845	1 probable transmembrane helix predicted for BCAS0425 by TMHMM2.0 at aa 7-26
216591033846	Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: TauD; COG2175
216591033847	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cl00184
216591033848	HMMPfam hit to PF02668, Taurine catabolism dioxygenase TauD, TfdA fa, score 5.3e-80
216591033849	oxidoreductase; Provisional; Region: PRK06128
216591033850	classical (c) SDR, subgroup 1; Region: SDR_c1; cd05355
216591033851	NAD binding site [chemical binding]; other site
216591033852	metal binding site [ion binding]; metal-binding site
216591033853	active site
216591033854	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0028
216591033855	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.3e-24
216591033856	PS00061 Short-chain dehydrogenases/reductases family signature.
216591033857	Protein of unknown function (DUF2934); Region: DUF2934; pfam11154
216591033858	FOG: CBS domain [General function prediction only]; Region: COG0517
216591033859	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair_9; cd04622
216591033860	HMMPfam hit to PF00571, CBS domain pair, score 3.3e-32
216591033861	MgtC family; Region: MgtC; pfam02308
216591033862	HMMPfam hit to PF02308, MgtC family, score 8.1e-23
216591033863	5 probable transmembrane helices predicted for BCAS0432 by TMHMM2.0 at aa 10-29, 42-64, 79-96, 101-123 and 127-146
216591033864	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591033865	non-specific DNA binding site [nucleotide binding]; other site
216591033866	salt bridge; other site
216591033867	sequence-specific DNA binding site [nucleotide binding]; other site
216591033868	HMMPfam hit to PF01381, Helix-turn-helix, score 2.4e-07
216591033869	Predicted helix-turn-helix motif with score 1562.000, SD 4.51 at aa 26-47, sequence FTRDELANATGLSPKFISQVEA
216591033870	HipA N-terminal domain; Region: Couple_hipA; pfam13657
216591033871	HipA-like N-terminal domain; Region: HipA_N; pfam07805
216591033872	HipA-like C-terminal domain; Region: HipA_C; pfam07804
216591033873	HMMPfam hit to PF07805, HipA-like N-terminal domain, score 1.5e-14
216591033874	HMMPfam hit to PF07804, HipA-like C-terminal domain, score 1.1e-25
216591033875	oxidoreductase; Provisional; Region: PRK06196
216591033876	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591033877	NAD(P) binding site [chemical binding]; other site
216591033878	active site
216591033879	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.6e-06
216591033880	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033881	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033882	Cupin; Region: Cupin_6; pfam12852
216591033883	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591033884	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591033885	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591033886	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 1.2e-07
216591033887	Predicted helix-turn-helix motif with score 1216.000, SD 3.33 at aa 215-236, sequence WTVDALAACCHVSRSTFALHFK
216591033888	PS00041 Bacterial regulatory proteins, araC family signature.
216591033889	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.5e-11
216591033890	OsmC-like protein; Region: OsmC; pfam02566
216591033891	HMMPfam hit to PF02566, OsmC-like protein, score 5.7e-13
216591033892	Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_methylthioribose_binding_like; cd06305
216591033893	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
216591033894	putative ligand binding site [chemical binding]; other site
216591033895	HMMPfam hit to PF00532, Periplasmic binding proteins and sugar b, score 0.00028
216591033896	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
216591033897	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
216591033898	TM-ABC transporter signature motif; other site
216591033899	10 probable transmembrane helices predicted for BCAS0439 by TMHMM2.0 at aa 21-40, 55-77, 79-98, 103-125, 134-156, 182-204, 237-259, 263-285, 292-311 and 315-337
216591033900	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.2e-52
216591033901	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033902	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591033903	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
216591033904	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
216591033905	Walker A/P-loop; other site
216591033906	ATP binding site [chemical binding]; other site
216591033907	Q-loop/lid; other site
216591033908	ABC transporter signature motif; other site
216591033909	Walker B; other site
216591033910	D-loop; other site
216591033911	H-loop/switch region; other site
216591033912	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
216591033913	HMMPfam hit to PF00005, ABC transporter, score 1.2e-20
216591033914	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033915	HMMPfam hit to PF00005, ABC transporter, score 1.4e-50
216591033916	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033917	FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; Region: FMN_nitrolo; TIGR03860
216591033918	nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2; Region: Nitrilotriacetate_monoxgenase; cd01095
216591033919	active site
216591033920	non-prolyl cis peptide bond; other site
216591033921	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033922	dimer interface [polypeptide binding]; other site
216591033923	conserved gate region; other site
216591033924	putative PBP binding loops; other site
216591033925	ABC-ATPase subunit interface; other site
216591033926	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.7e-20
216591033927	5 probable transmembrane helices predicted for BCAS0442 by TMHMM2.0 at aa 23-45, 58-80, 100-119, 157-179 and 201-223
216591033928	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591033929	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
216591033930	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033931	putative PBP binding loops; other site
216591033932	dimer interface [polypeptide binding]; other site
216591033933	ABC-ATPase subunit interface; other site
216591033934	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.3e-18
216591033935	4 probable transmembrane helices predicted for BCAS0443 by TMHMM2.0 at aa 24-46, 67-89, 104-123 and 207-229
216591033936	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
216591033937	Predicted helix-turn-helix motif with score 1083.000, SD 2.88 at aa 136-157, sequence VGQIEAAHAYGMTPWQTFTRIR
216591033938	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591033939	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591033940	substrate binding pocket [chemical binding]; other site
216591033941	membrane-bound complex binding site; other site
216591033942	hinge residues; other site
216591033943	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.5e-59
216591033944	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892
216591033945	Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]; Region: COG2141
216591033946	Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892
216591033947	luciferase family oxidoreductase, group 1; Region: oxido_grp_1; TIGR03558
216591033948	HMMPfam hit to PF00296, Luciferase-like monooxygenase, score 2.5e-10
216591033949	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
216591033950	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591033951	Coenzyme A binding pocket [chemical binding]; other site
216591033952	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 3.4e-05
216591033953	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
216591033954	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_15; cd08492
216591033955	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 2.1e-72
216591033956	PS01040 Bacterial extracellular solute-binding proteins, family 5 signature.
216591033957	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
216591033958	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
216591033959	6 probable transmembrane helices predicted for BCAS0449 by TMHMM2.0 at aa 32-54, 129-151, 163-185, 195-217, 253-275 and 303-325
216591033960	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.8e-37
216591033961	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
216591033962	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591033963	dimer interface [polypeptide binding]; other site
216591033964	conserved gate region; other site
216591033965	putative PBP binding loops; other site
216591033966	ABC-ATPase subunit interface; other site
216591033967	6 probable transmembrane helices predicted for BCAS0450 by TMHMM2.0 at aa 26-48, 93-115, 136-158, 173-195, 208-230 and 257-279
216591033968	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.1e-42
216591033969	ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]; Region: COG1123
216591033970	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591033971	Walker A/P-loop; other site
216591033972	ATP binding site [chemical binding]; other site
216591033973	Q-loop/lid; other site
216591033974	ABC transporter signature motif; other site
216591033975	Walker B; other site
216591033976	D-loop; other site
216591033977	H-loop/switch region; other site
216591033978	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; pfam08352
216591033979	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
216591033980	Walker A/P-loop; other site
216591033981	ATP binding site [chemical binding]; other site
216591033982	Q-loop/lid; other site
216591033983	ABC transporter signature motif; other site
216591033984	Walker B; other site
216591033985	D-loop; other site
216591033986	H-loop/switch region; other site
216591033987	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
216591033988	HMMPfam hit to PF00005, ABC transporter, score 9.6e-41
216591033989	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033990	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 8.8e-07
216591033991	HMMPfam hit to PF00005, ABC transporter, score 6.9e-66
216591033992	PS00017 ATP/GTP-binding site motif A (P-loop).
216591033993	PS00211 ABC transporters family signature.
216591033994	HMMPfam hit to PF08352, Oligopeptide/dipeptide transporter, C-termi, score 7.2e-05
216591033995	Protein of unknown function (DUF2909); Region: DUF2909; pfam11137
216591033996	2 probable transmembrane helices predicted for BCAS0452 by TMHMM2.0 at aa 4-26 and 39-61
216591033997	1 probable transmembrane helix predicted for BCAS0453 by TMHMM2.0 at aa 15-37
216591033998	Protein of unknown function (DUF1275); Region: DUF1275; pfam06912
216591033999	HMMPfam hit to PF06912, Protein of unknown function (DUF1275), score 3.8e-46
216591034000	6 probable transmembrane helices predicted for BCAS0454 by TMHMM2.0 at aa 22-41, 66-88, 100-122, 126-148, 198-216 and 226-248
216591034001	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034002	Ribbon-helix-helix protein, copG family; Region: RHH_1; pfam01402
216591034003	HMMPfam hit to PF01402, Ribbon-helix-helix protein, copG family, score 4.9e-06
216591034004	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
216591034005	S-adenosylmethionine binding site [chemical binding]; other site
216591034006	Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]; Region: PhnA; COG2824
216591034007	PhnA Zinc-Ribbon; Region: PhnA_Zn_Ribbon; pfam08274
216591034008	PhnA protein; Region: PhnA; pfam03831
216591034009	HMMPfam hit to PF03831, PhnA protein, score 1.9e-28
216591034010	HMMPfam hit to PF08274, PhnA Zinc-Ribbon, score 7.7e-13
216591034011	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
216591034012	regulatory phosphorylation site [posttranslational modification]; other site
216591034013	HMMPfam hit to PF00381, PTS HPr component phosphorylation site, score 0.00046
216591034014	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
216591034015	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
216591034016	trimer interface [polypeptide binding]; other site
216591034017	eyelet of channel; other site
216591034018	HMMPfam hit to PF00267, Gram-negative porin, score 0.00052
216591034019	TM1410 hypothetical-related protein; Region: DUF297; pfam03537
216591034020	HMMPfam hit to PF03537, TM1410 hypothetical-related protein, score 5.2e-06
216591034021	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034022	Melibiase; Region: Melibiase; pfam02065
216591034023	HMMPfam hit to PF02065, Melibiase, score 1.3e-06
216591034024	EamA-like transporter family; Region: EamA; cl17759
216591034025	10 probable transmembrane helices predicted for BCAS0463 by TMHMM2.0 at aa 5-24, 34-53, 65-87, 92-114, 121-138, 148-167, 180-199, 209-231, 238-260 and 270-292
216591034026	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.9e-09
216591034027	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 2.1e-05
216591034028	Tagatose 6 phosphate kinase; Region: Tagatose_6_P_K; cl09211
216591034029	HMMPfam hit to PF08013, Tagatose 6 phosphate kinase, score 2.3e-231
216591034030	putative sugar isomerase, AgaS family; Region: agaS_fam; TIGR02815
216591034031	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
216591034032	dimer interface [polypeptide binding]; other site
216591034033	active site
216591034034	SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; Region: SIS; cl00389
216591034035	HMMPfam hit to PF01380, SIS domain, score 0.0011
216591034036	HMMPfam hit to PF01380, SIS domain, score 0.0013
216591034037	PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1.
216591034038	Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]; Region: COG2971
216591034039	HMMPfam hit to PF01869, BadF/BadG/BcrA/BcrD ATPase family, score 3.7e-44
216591034040	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
216591034041	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
216591034042	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
216591034043	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 0.0023
216591034044	HMMPfam hit to PF08220, DeoR-like helix-turn-helix domain, score 8.6e-19
216591034045	HMMPfam hit to PF08279, HTH domain, score 5.8e-06
216591034046	Predicted helix-turn-helix motif with score 1556.000, SD 4.49 at aa 36-57, sequence VTVEELAERFGISLVTVRSDLN
216591034047	HMMPfam hit to PF00455, Bacterial regulatory proteins, deoR family, score 5.8e-49
216591034048	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
216591034049	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 2.1e-06
216591034050	DNA-binding transcriptional regulator RstA; Provisional; Region: PRK10701
216591034051	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591034052	active site
216591034053	phosphorylation site [posttranslational modification]
216591034054	intermolecular recognition site; other site
216591034055	dimerization interface [polypeptide binding]; other site
216591034056	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591034057	DNA binding site [nucleotide binding]
216591034058	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.2e-26
216591034059	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 5.2e-16
216591034060	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591034061	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.4e-37
216591034062	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.5e-20
216591034063	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034064	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
216591034065	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591034066	putative substrate translocation pore; other site
216591034067	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Region: Glucosaminidase; cl17361
216591034068	13 probable transmembrane helices predicted for BCAS0472 by TMHMM2.0 at aa 21-43, 63-85, 90-112, 149-171, 178-195, 210-232, 245-267, 282-304, 311-333, 343-362, 383-400, 410-432 and 494-516
216591034069	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.6e-54
216591034070	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034071	PS00092 N-6 Adenine-specific DNA methylases signature.
216591034072	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591034073	Multidrug resistance efflux pump [Defense mechanisms]; Region: EmrA; COG1566
216591034074	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591034075	HMMPfam hit to PF00529, HlyD family secretion protein, score 1.7e-46
216591034076	1 probable transmembrane helix predicted for BCAS0473 by TMHMM2.0 at aa 124-146
216591034077	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_10; cd04667
216591034078	nudix motif; other site
216591034079	HMMPfam hit to PF00293, NUDIX domain, score 4.4e-21
216591034080	PS00893 mutT domain signature.
216591034081	Predicted helix-turn-helix motif with score 1002.000, SD 2.60 at aa 150-171, sequence RQFADLCAACGLSPAPVKRLSS
216591034082	BON domain; Region: BON; pfam04972
216591034083	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 2.1e-07
216591034084	1 probable transmembrane helix predicted for BCAS0477 by TMHMM2.0 at aa 10-27
216591034085	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034086	Low affinity iron permease; Region: Iron_permease; pfam04120
216591034087	HMMPfam hit to PF07300, Protein of unknown function (DUF1452), score 4.7e-51
216591034088	2 probable transmembrane helices predicted for BCAS0478 by TMHMM2.0 at aa 40-62 and 72-91
216591034089	FRG domain; Region: FRG; pfam08867
216591034090	Domain of unknown function (DUF305); Region: DUF305; cl17794
216591034091	HMMPfam hit to PF03713, Domain of unknown function (DUF305), score 1.9e-23
216591034092	Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303
216591034093	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
216591034094	HMMPfam hit to PF05199, GMC oxidoreductase, score 0.00057
216591034095	HMMPfam hit to PF00732, GMC oxidoreductase, score 2.6e-13
216591034096	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034097	Gluconate 2-dehydrogenase subunit 3; Region: Gluconate_2-dh3; pfam13618
216591034098	6 probable transmembrane helices predicted for BCAS0483 by TMHMM2.0 at aa 82-99, 114-136, 149-171, 186-206, 218-240 and 255-277
216591034099	Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion; Region: enolase_like; cl17188
216591034100	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]; Region: COG4948
216591034101	metal binding site [ion binding]; metal-binding site
216591034102	substrate binding pocket [chemical binding]; other site
216591034103	HMMPfam hit to PF01188, Mandelate racemase / muconate lactonizing en, score 5.2e-09
216591034104	HMMPfam hit to PF02746, Mandelate racemase / muconate lactonizing en, score 1.6e-05
216591034105	PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.
216591034106	thiamine pyrophosphate protein; Provisional; Region: PRK08273
216591034107	Pyrimidine (PYR) binding domain of POX; Region: TPP_PYR_POX; cd07039
216591034108	PYR/PP interface [polypeptide binding]; other site
216591034109	dimer interface [polypeptide binding]; other site
216591034110	tetramer interface [polypeptide binding]; other site
216591034111	TPP binding site [chemical binding]; other site
216591034112	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
216591034113	Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629
216591034114	TPP-binding site [chemical binding]; other site
216591034115	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 4.7e-50
216591034116	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 8.5e-18
216591034117	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 7.9e-24
216591034118	PS00187 Thiamine pyrophosphate enzymes signature.
216591034119	Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]; Region: SGA1; COG3387
216591034120	Glycosyl hydrolases family 15; Region: Glyco_hydro_15; pfam00723
216591034121	HMMPfam hit to PF00723, Glycosyl hydrolases family, score 8.8e-85
216591034122	short chain dehydrogenase; Provisional; Region: PRK09072
216591034123	classical (c) SDR, subgroup 3; Region: SDR_c3; cd05360
216591034124	putative NAD(P) binding site [chemical binding]; other site
216591034125	active site
216591034126	1 probable transmembrane helix predicted for BCAS0487 by TMHMM2.0 at aa 300-322
216591034127	HMMPfam hit to PF00106, short chain dehydrogenase, score 2.1e-26
216591034128	PS00061 Short-chain dehydrogenases/reductases family signature.
216591034129	cytochrome c oxidase, subunit II; Region: CoxB; TIGR02866
216591034130	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; pfam00116
216591034131	Cytochrome c; Region: Cytochrom_C; pfam00034
216591034132	3 probable transmembrane helices predicted for BCAS0488 by TMHMM2.0 at aa 12-34, 64-86 and 99-121
216591034133	HMMPfam hit to PF00116, Cytochrome C oxidase subunit II, periplas, score 1.2e-20
216591034134	PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.
216591034135	HMMPfam hit to PF00034, Cytochrome c, score 0.0048
216591034136	PS00190 Cytochrome c family heme-binding site signature.
216591034137	Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843
216591034138	Ubiquinol oxidase subunit I.  Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously pumps protons...; Region: Ubiquinol_Oxidase_I; cd01662
216591034139	D-pathway; other site
216591034140	Putative ubiquinol binding site [chemical binding]; other site
216591034141	Low-spin heme (heme b) binding site [chemical binding]; other site
216591034142	Putative water exit pathway; other site
216591034143	Binuclear center (heme o3/CuB) [ion binding]; other site
216591034144	K-pathway; other site
216591034145	Putative proton exit pathway; other site
216591034146	Heme-copper oxidase subunit III.  Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The...; Region: Heme_Cu_Oxidase_III_like; cd00386
216591034147	HMMPfam hit to PF00115, Cytochrome C and Quinol oxidase polypeptide, score 6.8e-177
216591034148	19 probable transmembrane helices predicted for BCAS0489 by TMHMM2.0 at aa 52-74, 100-122, 135-157, 182-204, 225-247, 267-289, 302-324, 339-361, 373-395, 410-432, 444-466, 489-511, 600-617, 622-639, 702-724, 739-758, 771-793, 808-830 and 851-873
216591034149	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591034150	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034151	HMMPfam hit to PF00510, Cytochrome c oxidase subunit III, score 7.2e-11
216591034152	3 probable transmembrane helices predicted for BCAS0490 by TMHMM2.0 at aa 7-29, 55-77 and 104-126
216591034153	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034154	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591034155	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
216591034156	Cytochrome c; Region: Cytochrom_C; pfam00034
216591034157	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034158	PS00190 Cytochrome c family heme-binding site signature.
216591034159	PS00190 Cytochrome c family heme-binding site signature.
216591034160	HMMPfam hit to PF00034, Cytochrome c, score 9.3e-05
216591034161	YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgH_like; cd02198
216591034162	homotrimer interaction site [polypeptide binding]; other site
216591034163	putative active site [active]
216591034164	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 6.4e-36
216591034165	CDS contains a frameshift after codon 188. Similar to Acinetobacter sp. (strain adp1) 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase BenD UniProt:P07772 (EMBL:AF009224 (261 aa) fasta scores: E()=1e-48, 57.915% id in 259 aa
216591034166	HMMPfam hit to PF00106, short chain dehydrogenase, score 4.1e-13
216591034167	PS00061 Short-chain dehydrogenases/reductases family signature.
216591034168	anthranilate dioxygenase reductase; Provisional; Region: antC; PRK11872
216591034169	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
216591034170	catalytic loop [active]
216591034171	iron binding site [ion binding]; other site
216591034172	Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal...; Region: BenDO_FAD_NAD; cd06209
216591034173	FAD binding pocket [chemical binding]; other site
216591034174	FAD binding motif [chemical binding]; other site
216591034175	phosphate binding motif [ion binding]; other site
216591034176	beta-alpha-beta structure motif; other site
216591034177	NAD binding pocket [chemical binding]; other site
216591034178	HMMPfam hit to PF00175, Oxidoreductase NAD-binding domain, score 1.6e-30
216591034179	HMMPfam hit to PF00970, Oxidoreductase FAD-binding domain, score 6.1e-22
216591034180	HMMPfam hit to PF08021, Siderophore-interacting FAD-binding dom, score 0.0031
216591034181	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034182	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding doma, score 1.1e-18
216591034183	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
216591034184	Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the...; Region: ring_hydroxylating_dioxygenases_beta; cd00667
216591034185	inter-subunit interface; other site
216591034186	HMMPfam hit to PF00866, Ring hydroxylating beta subunit, score 2.4e-69
216591034187	benzoate 1,2-dioxygenase, large subunit; Region: benzo_1_2_benA; TIGR03229
216591034188	Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to...; Region: Rieske_RO_Alpha_HBDO; cd03542
216591034189	C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_AntDO-like; cd08879
216591034190	putative alpha subunit interface [polypeptide binding]; other site
216591034191	putative active site [active]
216591034192	putative substrate binding site [chemical binding]; other site
216591034193	Fe binding site [ion binding]; other site
216591034194	HMMPfam hit to PF00848, Ring hydroxylating alpha subunit (cat, score 8.8e-22
216591034195	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 1.8e-32
216591034196	catechol 1,2-dioxygenase, proteobacterial; Region: catechol_proteo; TIGR02439
216591034197	Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of...; Region: 1,2-CTD; cd03460
216591034198	dimer interface [polypeptide binding]; other site
216591034199	active site
216591034200	HMMPfam hit to PF00775, Dioxygenase, score 4.4e-107
216591034201	PS00083 Intradiol ring-cleavage dioxygenases signature.
216591034202	HMMPfam hit to PF04444, Catechol dioxygenase N terminus, score 2.3e-40
216591034203	Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived...; Region: MLE; cd03318
216591034204	muconate and chloromuconate cycloisomerases; Region: mucon_cyclo; TIGR02534
216591034205	octamer interface [polypeptide binding]; other site
216591034206	active site
216591034207	HMMPfam hit to PF01188, Mandelate racemase / muconate lactonizing en, score 9.9e-92
216591034208	PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.
216591034209	HMMPfam hit to PF02746, Mandelate racemase / muconate lactonizing en, score 1.4e-48
216591034210	PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1.
216591034211	Uncharacterized conserved protein [Function unknown]; Region: COG1359
216591034212	HMMPfam hit to PF03992, Antibiotic biosynthesis monooxygenase, score 2.3e-08
216591034213	1 probable transmembrane helix predicted for BCAS0499 by TMHMM2.0 at aa 12-31
216591034214	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
216591034215	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
216591034216	active site
216591034217	catalytic tetrad [active]
216591034218	HMMPfam hit to PF00248, Aldo/keto reductase family, score 1.7e-75
216591034219	Multimeric flavodoxin WrbA [General function prediction only]; Region: WrbA; COG0655
216591034220	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591034221	PS00201 Flavodoxin signature.
216591034222	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591034223	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591034224	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591034225	putative effector binding pocket; other site
216591034226	dimerization interface [polypeptide binding]; other site
216591034227	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 9.7e-17
216591034228	Predicted helix-turn-helix motif with score 1403.000, SD 3.97 at aa 20-41, sequence GSFAAAARQLGVTSAAVSKNVA
216591034229	PS00044 Bacterial regulatory proteins, lysR family signature.
216591034230	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.3e-35
216591034231	BcepMu; BcenGI14
216591034232	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
216591034233	HMMPfam hit to PF01757, Acyltransferase family, score 3.6e-20
216591034234	9 probable transmembrane helices predicted for BCAS0504 by TMHMM2.0 at aa 13-35, 40-59, 80-102, 153-175, 182-204, 214-231, 252-274, 300-319 and 332-354
216591034235	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034236	Phage tail protein (Tail_P2_I); Region: Tail_P2_I; pfam09684
216591034237	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034238	Baseplate J-like protein; Region: Baseplate_J; cl01294
216591034239	HMMPfam hit to PF04865, Baseplate J-like protein, score 4.6e-108
216591034240	Gene 25-like lysozyme; Region: GPW_gp25; cl01403
216591034241	HMMPfam hit to PF04965, GPW / gp25 family, score 8.3e-35
216591034242	Phage-related baseplate assembly protein; Region: Phage_base_V; cl17812
216591034243	phage baseplate assembly protein V; Region: phage_P2_V; TIGR01644
216591034244	HMMPfam hit to PF04717, Phage-related baseplate assembly protein, score 6.4e-27
216591034245	tail protein; Provisional; Region: D; PHA02561
216591034246	HMMPfam hit to PF05954, Phage late control gene D protein (GPD), score 5.4e-82
216591034247	Phage Tail Protein X; Region: Phage_tail_X; pfam05489
216591034248	HMMPfam hit to PF05489, Phage Tail Protein X, score 3.6e-19
216591034249	Phage P2 GpU; Region: Phage_P2_GpU; pfam06995
216591034250	HMMPfam hit to PF06995, Phage P2 GpU, score 2.6e-14
216591034251	phage tail tape measure protein, TP901 family, core region; Region: tape_meas_TP901; TIGR01760
216591034252	6 probable transmembrane helices predicted for BCAS0513 by TMHMM2.0 at aa 478-500, 536-558, 573-595, 602-624, 629-651 and 658-680
216591034253	Mu-like prophage FluMu protein gp41; Region: FluMu_gp41; pfam10109
216591034254	Phage tail tube protein FII; Region: Phage_tube; pfam04985
216591034255	HMMPfam hit to PF04985, Phage tail tube protein FII, score 1e-07
216591034256	Phage tail sheath protein; Region: Phage_sheath_1; cl01389
216591034257	major tail sheath protein; Provisional; Region: FI; PHA02560
216591034258	HMMPfam hit to PF04984, Phage tail sheath protein, score 5.1e-163
216591034259	Gp37 protein; Region: Gp37; pfam09646
216591034260	Protein of unknown function (DUF1320); Region: DUF1320; pfam07030
216591034261	HMMPfam hit to PF07030, Protein of unknown function (DUF1320), score 3e-23
216591034262	SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain.  SirA (also known as UvrY,  and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this...; Region: SirA_YedF_YeeD; cl00436
216591034263	Phage virion morphogenesis family; Region: Phage_tail_S; cl02089
216591034264	HMMPfam hit to PF05069, Phage virion morphogenesis family, score 3.7e-14
216591034265	Phage Mu protein F like protein; Region: Phage_Mu_F; pfam04233
216591034266	HMMPfam hit to PF04233, Phage Mu protein F like protein, score 1.8e-63
216591034267	Protein of unknown function (DUF935); Region: DUF935; pfam06074
216591034268	Mu-like prophage protein gp29 [Function unknown]; Region: COG4383
216591034269	HMMPfam hit to PF06074, Protein of unknown function (DUF935), score 1.4e-147
216591034270	Mu-like prophage FluMu protein gp28 [General function prediction only]; Region: COG4373
216591034271	Protein of unknown function (DUF3486); Region: DUF3486; pfam11985
216591034272	1 probable transmembrane helix predicted for BCAS0531 by TMHMM2.0 at aa 10-32
216591034273	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034274	1 probable transmembrane helix predicted for BCAS0532 by TMHMM2.0 at aa 13-35
216591034275	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591034276	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
216591034277	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591034278	catalytic residue [active]
216591034279	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 2.8e-05
216591034280	Protein of unknown function (DUF4063); Region: DUF4063; pfam13272
216591034281	3 probable transmembrane helices predicted for BCAS0534 by TMHMM2.0 at aa 10-27, 34-52 and 91-113
216591034282	2 probable transmembrane helices predicted for BCAS0536 by TMHMM2.0 at aa 37-54 and 61-83
216591034283	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034284	1 probable transmembrane helix predicted for BCAS0538 by TMHMM2.0 at aa 184-201
216591034285	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl17200
216591034286	sequence-specific DNA binding site [nucleotide binding]; other site
216591034287	salt bridge; other site
216591034288	phage-associated protein, BcepMu gp16 family; Region: BcepMu_gp16; TIGR04111
216591034289	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
216591034290	dimerization interface [polypeptide binding]; other site
216591034291	putative DNA binding site [nucleotide binding]; other site
216591034292	putative Zn2+ binding site [ion binding]; other site
216591034293	Predicted helix-turn-helix motif with score 1416.000, SD 4.01 at aa 28-49, sequence LTPGELTKATNLSPSNITRYVA
216591034294	Integrase core domain; Region: rve; pfam00665
216591034295	HMMPfam hit to PF00665, Integrase core domain, score 1.2e-07
216591034296	Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]; Region: ExeA; COG3267
216591034297	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
216591034298	Walker A motif; other site
216591034299	ATP binding site [chemical binding]; other site
216591034300	Walker B motif; other site
216591034301	Predicted helix-turn-helix motif with score 1933.000, SD 5.77 at aa 14-35, sequence IKQAELAEHLNLSQAAVAQIVN
216591034302	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034303	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from bacteria and archaea; Region: NTP-PPase_u5; cd11542
216591034304	metal binding site [ion binding]; metal-binding site
216591034305	Protein of unknown function (DUF3164); Region: DUF3164; pfam11363
216591034306	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
216591034307	IHF dimer interface [polypeptide binding]; other site
216591034308	IHF - DNA interface [nucleotide binding]; other site
216591034309	HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 4.5e-46
216591034310	PS00045 Bacterial histone-like DNA-binding proteins signature.
216591034311	Protein of unknown function (DUF2528); Region: DUF2528; pfam10800
216591034312	Protein of unknown function (DUF1018); Region: DUF1018; pfam06252
216591034313	HMMPfam hit to PF06252, Protein of unknown function (DUF1018), score 2.4e-47
216591034314	Mor transcription activator family; Region: Mor; pfam08765
216591034315	Predicted helix-turn-helix motif with score 1822.000, SD 5.39 at aa 80-101, sequence DNHAELARKFGVSLQWIYKIIK
216591034316	Gene remnant. Similar to the N-terminal 722 residues of Bradyrhizobium japonicum transcriptional regulator TtrR SWALL:Q89V61 (EMBL:AP005939) (946 aa) fasta scores: E(): 4e-58, 36.16% id in 730 aa. CDS is truncated by the insertion of the downstream prophage (BcepMu) and subsequent recombination events
216591034317	HMMPfam hit to PF00486, Transcriptional regulatory protein, C ter, score 4.6e-18
216591034318	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591034319	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591034320	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591034321	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 4.5e-09
216591034322	Predicted helix-turn-helix motif with score 1285.000, SD 3.56 at aa 219-240, sequence VSIEEVANECDLSRGYFIRAFS
216591034323	PS00041 Bacterial regulatory proteins, araC family signature.
216591034324	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.3e-12
216591034325	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
216591034326	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 5.8e-18
216591034327	1 probable transmembrane helix predicted for BCAS0557 by TMHMM2.0 at aa 13-35
216591034328	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591034329	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591034330	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591034331	putative effector binding pocket; other site
216591034332	dimerization interface [polypeptide binding]; other site
216591034333	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.8e-12
216591034334	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.8e-45
216591034335	Domain of unknown function (DUF4104); Region: DUF4104; pfam13372
216591034336	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034337	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632
216591034338	DoxX; Region: DoxX; cl17842
216591034339	2 probable transmembrane helices predicted for BCAS0561 by TMHMM2.0 at aa 21-43 and 58-80
216591034340	Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]; Region: COG1574
216591034341	YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling; Region: YtcJ_like; cd01300
216591034342	active site
216591034343	HMMPfam hit to PF07969, Amidohydrolase family, score 5e-144
216591034344	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034345	Protein of unknown function (DUF1427); Region: DUF1427; pfam07235
216591034346	HMMPfam hit to PF07235, Protein of unknown function (DUF1427), score 2.7e-07
216591034347	2 probable transmembrane helices predicted for BCAS0564 by TMHMM2.0 at aa 4-21 and 28-47
216591034348	YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them; Region: YcaC_related; cd01012
216591034349	Isochorismatase family; Region: Isochorismatase; pfam00857
216591034350	catalytic triad [active]
216591034351	dimer interface [polypeptide binding]; other site
216591034352	conserved cis-peptide bond; other site
216591034353	HMMPfam hit to PF00857, Isochorismatase family, score 1.2e-05
216591034354	Protein of unknown function (DUF1427); Region: DUF1427; pfam07235
216591034355	HMMPfam hit to PF07235, Protein of unknown function (DUF1427), score 3.3e-36
216591034356	2 probable transmembrane helices predicted for BCAS0566 by TMHMM2.0 at aa 5-22 and 27-49
216591034357	Probable gene remnant resulting from a deletion event. Similar to the N-terminus of Burkholderia cenocepacia transcriptional regulator, LysR family UniProt:Q1BVG0 (EMBL:CP000378 (302 aa) fasta scores: E()=2.4e-34, 88.793% id in 116 aa. The downstream CDS is similar to the C-terminal region of this protein
216591034358	Probable gene remnant resulting from a deletion event. Similar to Burkholderia cenocepacia transcriptional regulator, LysR family UniProt:Q1BVG0 (EMBL:CP000378 (302 aa) fasta scores: E()=1e-23, 94.030% id in 67 aa. The upstream CDS is similar to the N-terminal region of this protein
216591034359	Protein of unknown function (DUF1275); Region: DUF1275; pfam06912
216591034360	HMMPfam hit to PF06912, Protein of unknown function (DUF1275), score 1.6e-32
216591034361	5 probable transmembrane helices predicted for BCAS0568 by TMHMM2.0 at aa 22-44, 59-81, 101-123, 127-146 and 199-221
216591034362	Protein of unknown function (DUF1427); Region: DUF1427; pfam07235
216591034363	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
216591034364	HMMPfam hit to PF00561, alpha/beta hydrolase fold, score 1.5e-25
216591034365	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591034366	hypothetical protein; Provisional; Region: PRK07236
216591034367	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]; Region: UbiH; COG0654
216591034368	HMMPfam hit to PF01494, FAD binding domain, score 8.8e-05
216591034369	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591034370	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
216591034371	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
216591034372	Walker A/P-loop; other site
216591034373	ATP binding site [chemical binding]; other site
216591034374	Q-loop/lid; other site
216591034375	ABC transporter signature motif; other site
216591034376	Walker B; other site
216591034377	D-loop; other site
216591034378	H-loop/switch region; other site
216591034379	HMMPfam hit to PF00005, ABC transporter, score 1.5e-63
216591034380	PS00211 ABC transporters family signature.
216591034381	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034382	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
216591034383	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591034384	dimer interface [polypeptide binding]; other site
216591034385	conserved gate region; other site
216591034386	putative PBP binding loops; other site
216591034387	ABC-ATPase subunit interface; other site
216591034388	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 6.7e-14
216591034389	5 probable transmembrane helices predicted for BCAS0575 by TMHMM2.0 at aa 15-37, 57-79, 83-105, 142-164 and 179-201
216591034390	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
216591034391	dimer interface [polypeptide binding]; other site
216591034392	conserved gate region; other site
216591034393	putative PBP binding loops; other site
216591034394	ABC-ATPase subunit interface; other site
216591034395	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 6.5e-21
216591034396	5 probable transmembrane helices predicted for BCAS0576 by TMHMM2.0 at aa 23-45, 66-88, 93-112, 158-180 and 190-212
216591034397	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
216591034398	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591034399	substrate binding pocket [chemical binding]; other site
216591034400	membrane-bound complex binding site; other site
216591034401	hinge residues; other site
216591034402	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.2e-45
216591034403	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
216591034404	1 probable transmembrane helix predicted for BCAS0577 by TMHMM2.0 at aa 13-35
216591034405	L-asparagine permease; Provisional; Region: PRK15049
216591034406	HMMPfam hit to PF00324, Amino acid permease, score 2.1e-151
216591034407	11 probable transmembrane helices predicted for BCAS0578 by TMHMM2.0 at aa 56-78, 114-136, 141-163, 176-198, 218-240, 260-282, 297-319, 351-373, 377-399, 420-442 and 447-469
216591034408	PS00218 Amino acid permeases signature.
216591034409	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591034410	PIN domain of ribonucleases (toxins), VapC, FitB, and PAE0151 of bacterial and archaeal toxin/antitoxin-like operons, and other similar homologs; Region: PIN_VapC-like; cd09861
216591034411	putative active site [active]
216591034412	Regulators of stationary/sporulation gene expression [Transcription]; Region: AbrB; COG2002
216591034413	looped-hinge helix DNA binding domain, AbrB family; Region: lp_hng_hel_AbrB; TIGR01439
216591034414	HMMPfam hit to PF04014, SpoVT / AbrB like domain, score 5.6e-08
216591034415	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
216591034416	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 1.2e-149
216591034417	10 probable transmembrane helices predicted for BCAS0582 by TMHMM2.0 at aa 13-30, 358-380, 433-455, 460-482, 538-557, 895-917, 924-943, 948-970, 996-1018 and 1031-1053
216591034418	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
216591034419	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591034420	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591034421	1 probable transmembrane helix predicted for BCAS0583 by TMHMM2.0 at aa 43-62
216591034422	HMMPfam hit to PF00529, HlyD family secretion protein, score 1.7e-09
216591034423	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591034424	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034425	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.5e-19
216591034426	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034427	HMMPfam hit to PF02321, Outer membrane efflux protein, score 5.4e-47
216591034428	heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386
216591034429	HAMP domain; Region: HAMP; pfam00672
216591034430	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591034431	dimer interface [polypeptide binding]; other site
216591034432	phosphorylation site [posttranslational modification]
216591034433	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591034434	ATP binding site [chemical binding]; other site
216591034435	Mg2+ binding site [ion binding]; other site
216591034436	G-X-G motif; other site
216591034437	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.3e-35
216591034438	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.7e-19
216591034439	HMMPfam hit to PF00672, HAMP domain, score 6.6e-10
216591034440	2 probable transmembrane helices predicted for BCAS0585 by TMHMM2.0 at aa 10-32 and 190-207
216591034441	heavy metal response regulator; Region: cztR_silR_copR; TIGR01387
216591034442	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591034443	active site
216591034444	phosphorylation site [posttranslational modification]
216591034445	intermolecular recognition site; other site
216591034446	dimerization interface [polypeptide binding]; other site
216591034447	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591034448	DNA binding site [nucleotide binding]
216591034449	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 4.4e-23
216591034450	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.8e-39
216591034451	Truncation of N terminal 235 amino acids; frameshift after codon 66
216591034452	20 amino acid section similar to residues 338-362 Pseudomonas fluorescens halogenase PrnC prnC SWALL:P95482 (EMBL:U74493) (567 aa) fasta scores: E(): 2.1e-06, 88% id in 25 aa; truncation of N terminal 337 amino acids, truncation of C terminal 104 amino acids
216591034453	Similar to Ralstonia solanacearum probable transmembrane protein rs03653 SWALL:Q8XXM5 (EMBL:AL646068) (200 aa) fasta scores: E(): 1.2e-22, 71.27% id in 94 aa; N terminus only. Truncation of C-terminal 104 amino acids; frameshift after codon 50
216591034454	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
216591034455	HAMP domain; Region: HAMP; pfam00672
216591034456	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591034457	dimer interface [polypeptide binding]; other site
216591034458	phosphorylation site [posttranslational modification]
216591034459	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591034460	ATP binding site [chemical binding]; other site
216591034461	Mg2+ binding site [ion binding]; other site
216591034462	G-X-G motif; other site
216591034463	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.5e-30
216591034464	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 2.6e-10
216591034465	HMMPfam hit to PF00672, HAMP domain, score 1.1e-09
216591034466	2 probable transmembrane helices predicted for BCAS0589 by TMHMM2.0 at aa 5-24 and 132-154
216591034467	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591034468	active site
216591034469	phosphorylation site [posttranslational modification]
216591034470	intermolecular recognition site; other site
216591034471	dimerization interface [polypeptide binding]; other site
216591034472	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591034473	DNA binding site [nucleotide binding]
216591034474	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.5e-19
216591034475	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.3e-32
216591034476	multidrug efflux system protein MdtE; Provisional; Region: PRK09859
216591034477	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591034478	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591034479	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034480	HMMPfam hit to PF00529, HlyD family secretion protein, score 2.9e-69
216591034481	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915
216591034482	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591034483	12 probable transmembrane helices predicted for BCAS0592 by TMHMM2.0 at aa 13-35, 340-359, 366-388, 392-414, 438-460, 475-497, 539-561, 889-908, 915-932, 942-964, 990-1012 and 1022-1044
216591034484	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591034485	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034486	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.1e-33
216591034487	HMMPfam hit to PF02321, Outer membrane efflux protein, score 4.2e-51
216591034488	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
216591034489	Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174
216591034490	substrate binding site [chemical binding]; other site
216591034491	dimer interface [polypeptide binding]; other site
216591034492	ATP binding site [chemical binding]; other site
216591034493	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 4e-65
216591034494	PS00583 pfkB family of carbohydrate kinases signature 1.
216591034495	Fucose permease [Carbohydrate transport and metabolism]; Region: FucP; COG0738
216591034496	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591034497	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591034498	12 probable transmembrane helices predicted for BCAS0595 by TMHMM2.0 at aa 13-35, 58-80, 87-109, 114-136, 156-173, 208-227, 255-277, 290-312, 321-338, 342-364, 376-398 and 408-425
216591034499	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.5e-22
216591034500	deoxyribose mutarotase_like; Region: deoxyribose_mutarotase; cd09269
216591034501	active site
216591034502	catalytic residues [active]
216591034503	DNA-binding transcriptional repressor DeoR; Provisional; Region: PRK10681
216591034504	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; cl17531
216591034505	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
216591034506	HMMPfam hit to PF00455, Bacterial regulatory proteins, deoR family, score 2.3e-49
216591034507	HMMPfam hit to PF08220, DeoR-like helix-turn-helix domain, score 0.00012
216591034508	Predicted helix-turn-helix motif with score 2117.000, SD 6.40 at aa 22-43, sequence IHLKEVAELFGVSEMTIRRDLA
216591034509	PS00894 Bacterial regulatory proteins, deoR family signature.
216591034510	2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family; Region: DeoC; cd00959
216591034511	intersubunit interface [polypeptide binding]; other site
216591034512	active site
216591034513	catalytic residue [active]
216591034514	HMMPfam hit to PF01791, DeoC/LacD family aldolase, score 4.5e-78
216591034515	Phytanoyl-CoA dioxygenase (PhyH); Region: PhyH; pfam05721
216591034516	HMMPfam hit to PF05721, Phytanoyl-CoA dioxygenase (PhyH), score 2e-19
216591034517	Predicted ATPase (AAA+ superfamily) [General function prediction only]; Region: COG2607
216591034518	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591034519	Walker A motif; other site
216591034520	ATP binding site [chemical binding]; other site
216591034521	Walker B motif; other site
216591034522	HMMPfam hit to PF05673, Protein of unknown function (DUF815), score 2.5e-48
216591034523	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034524	EamA-like transporter family; Region: EamA; pfam00892
216591034525	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
216591034526	EamA-like transporter family; Region: EamA; pfam00892
216591034527	10 probable transmembrane helices predicted for BCAS0602 by TMHMM2.0 at aa 5-22, 35-57, 61-80, 93-115, 119-138, 150-172, 182-204, 216-238, 248-266 and 271-290
216591034528	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.7e-15
216591034529	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.2e-21
216591034530	Cupin domain; Region: Cupin_2; cl17218
216591034531	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591034532	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591034533	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591034534	HMMPfam hit to PF07883, Cupin domain, score 0.0043
216591034535	Predicted helix-turn-helix motif with score 2234.000, SD 6.80 at aa 184-205, sequence RTIAEWADLLGLSVRTLHRAFR
216591034536	PS00041 Bacterial regulatory proteins, araC family signature.
216591034537	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.4e-07
216591034538	Domain of unknown function (DUF1772); Region: DUF1772; cl12097
216591034539	4 probable transmembrane helices predicted for BCAS0604 by TMHMM2.0 at aa 9-31, 57-79, 86-108 and 141-160
216591034540	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034541	NADH(P)-binding; Region: NAD_binding_10; pfam13460
216591034542	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591034543	NAD(P) binding site [chemical binding]; other site
216591034544	active site
216591034545	HMMPfam hit to PF05368, NmrA-like family, score 0.0013
216591034546	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591034547	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591034548	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 9.8e-12
216591034549	Predicted helix-turn-helix motif with score 1311.000, SD 3.65 at aa 55-76, sequence FRMSDIVERTGISFGSLYQYFP
216591034550	3-hydroxybutyryl-CoA dehydrogenase; Validated; Region: PRK05808
216591034551	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
216591034552	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
216591034553	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 3.3e-54
216591034554	PS00067 3-hydroxyacyl-CoA dehydrogenase signature.
216591034555	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, score 1.8e-92
216591034556	beta-ketothiolase; Provisional; Region: PRK09051
216591034557	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591034558	dimer interface [polypeptide binding]; other site
216591034559	active site
216591034560	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 6.1e-69
216591034561	PS00099 Thiolases active site.
216591034562	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 1.8e-129
216591034563	PS00455 Putative AMP-binding domain signature.
216591034564	PS00098 Thiolases acyl-enzyme intermediate signature.
216591034565	Dehydrogenases (flavoproteins) [Energy production and conversion]; Region: FixC; COG0644
216591034566	hydroxyglutarate oxidase; Provisional; Region: PRK11728
216591034567	Electron transfer flavoprotein-ubiquinone oxidoreductase; Region: ETF_QO; pfam05187
216591034568	Ferredoxin-like protein [Energy production and conversion]; Region: FixX; COG2440
216591034569	HMMPfam hit to PF05187, Electron transfer flavoprotein-ubiquinone ox, score 1e-115
216591034570	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00011
216591034571	acyl-CoA dehydrogenase; Provisional; Region: PTZ00456
216591034572	Acyl-CoA dehydrogenase N terminal; Region: AcylCoA_DH_N; pfam12418
216591034573	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
216591034574	active site
216591034575	Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806
216591034576	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal doma, score 7.8e-31
216591034577	HMMPfam hit to PF08028, Acyl-CoA dehydrogenase, C-terminal doma, score 4.7e-05
216591034578	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, middle domain, score 7e-18
216591034579	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591034580	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591034581	Helix-turn-helix domain; Region: HTH_28; pfam13518
216591034582	HMMPfam hit to PF01527, Transposase, score 0.0012
216591034583	Predicted helix-turn-helix motif with score 1296.000, SD 3.60 at aa 21-42, sequence AGTKTLAHRYGVGRTMVRRWVA
216591034584	HMMPfam hit to PF02178, AT hook motif, score 0.042
216591034585	putative transposase OrfB; Reviewed; Region: PHA02517
216591034586	HTH-like domain; Region: HTH_21; pfam13276
216591034587	Integrase core domain; Region: rve; pfam00665
216591034588	Integrase core domain; Region: rve_2; pfam13333
216591034589	PS00228 Tubulin-beta mRNA autoregulation signal.
216591034590	Predicted helix-turn-helix motif with score 1108.000, SD 2.96 at aa 8-29, sequence HPVAALLKAAGLARSTFYYQLK
216591034591	HMMPfam hit to PF00665, Integrase core domain, score 3.8e-47
216591034592	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
216591034593	PS00041 Bacterial regulatory proteins, araC family signature.
216591034594	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.0012
216591034595	hypothetical protein; Provisional; Region: PRK07236
216591034596	HMMPfam hit to PF01494, FAD binding domain, score 7.3e-06
216591034597	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591034598	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591034599	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591034600	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 2.4e-08
216591034601	Predicted helix-turn-helix motif with score 1402.000, SD 3.96 at aa 264-285, sequence PVIDQAAEHLHCSVRTLSRHLA
216591034602	Long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07059
216591034603	Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD; Region: FC-FACS_FadD_like; cd05936
216591034604	acyl-activating enzyme (AAE) consensus motif; other site
216591034605	putative AMP binding site [chemical binding]; other site
216591034606	putative active site [active]
216591034607	putative CoA binding site [chemical binding]; other site
216591034608	HMMPfam hit to PF00501, AMP-binding enzyme, score 2.7e-122
216591034609	PS00455 Putative AMP-binding domain signature.
216591034610	1 probable transmembrane helix predicted for BCAS0616 by TMHMM2.0 at aa 77-99
216591034611	HAD-superfamily hydrolase, subfamily IIB; Region: HAD-SF-IIB; TIGR01484
216591034612	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
216591034613	active site
216591034614	motif I; other site
216591034615	motif II; other site
216591034616	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591034617	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591034618	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591034619	Predicted helix-turn-helix motif with score 1148.000, SD 3.10 at aa 277-298, sequence PDIDAIAEILCMTSRTLRRKLE
216591034620	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 7.8e-08
216591034621	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591034622	dimer interface [polypeptide binding]; other site
216591034623	phosphorylation site [posttranslational modification]
216591034624	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591034625	ATP binding site [chemical binding]; other site
216591034626	Mg2+ binding site [ion binding]; other site
216591034627	G-X-G motif; other site
216591034628	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 2.4e-24
216591034629	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 6.1e-17
216591034630	HMMPfam hit to PF00672, HAMP domain, score 6.9e-10
216591034631	2 probable transmembrane helices predicted for BCAS0619 by TMHMM2.0 at aa 10-27 and 180-202
216591034632	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034633	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
216591034634	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591034635	active site
216591034636	phosphorylation site [posttranslational modification]
216591034637	intermolecular recognition site; other site
216591034638	dimerization interface [polypeptide binding]; other site
216591034639	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
216591034640	DNA binding site [nucleotide binding]
216591034641	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.2e-27
216591034642	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.4e-30
216591034643	1 probable transmembrane helix predicted for BCAS0621 by TMHMM2.0 at aa 5-24
216591034644	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034645	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591034646	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591034647	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591034648	dimerization interface [polypeptide binding]; other site
216591034649	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.4e-28
216591034650	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 5.3e-22
216591034651	Predicted helix-turn-helix motif with score 1576.000, SD 4.55 at aa 21-42, sequence GSLAGAARRLGISHATVFRRLA
216591034652	Flavodoxin-like fold; Region: Flavodoxin_2; pfam02525
216591034653	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
216591034654	HMMPfam hit to PF02525, Flavodoxin-like fold, score 2e-52
216591034655	Avidin family; Region: Avidin; pfam01382
216591034656	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034657	Protein of unknown function (DUF3897); Region: DUF3897; cl17494
216591034658	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034659	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
216591034660	Sel1-like repeats; Region: SEL1; smart00671
216591034661	HMMPfam hit to PF08238, Sel1 repeat, score 0.018
216591034662	HMMPfam hit to PF08238, Sel1 repeat, score 1.1e-09
216591034663	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034664	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591034665	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591034666	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 1.1e-12
216591034667	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034668	Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]; Region: MntH; COG1914
216591034669	Natural resistance-associated macrophage protein; Region: Nramp; pfam01566
216591034670	HMMPfam hit to PF01566, Natural resistance-associated macrophage pro, score 6.4e-08
216591034671	10 probable transmembrane helices predicted for BCAS0630 by TMHMM2.0 at aa 51-73, 94-116, 131-150, 157-179, 194-216, 254-276, 296-318, 339-361, 371-393 and 406-428
216591034672	CheB methylesterase; Region: CheB_methylest; pfam01339
216591034673	HMMPfam hit to PF01339, CheB methylesterase, score 4.5e-23
216591034674	CheB methylesterase; Region: CheB_methylest; pfam01339
216591034675	Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]; Region: CheR; COG1352
216591034676	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
216591034677	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
216591034678	S-adenosylmethionine binding site [chemical binding]; other site
216591034679	PAS domain; Region: PAS_9; pfam13426
216591034680	PAS domain; Region: PAS_10; pfam13596
216591034681	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
216591034682	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591034683	putative active site [active]
216591034684	heme pocket [chemical binding]; other site
216591034685	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591034686	dimer interface [polypeptide binding]; other site
216591034687	phosphorylation site [posttranslational modification]
216591034688	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591034689	ATP binding site [chemical binding]; other site
216591034690	Mg2+ binding site [ion binding]; other site
216591034691	G-X-G motif; other site
216591034692	Response regulator receiver domain; Region: Response_reg; pfam00072
216591034693	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591034694	active site
216591034695	phosphorylation site [posttranslational modification]
216591034696	intermolecular recognition site; other site
216591034697	dimerization interface [polypeptide binding]; other site
216591034698	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.2e-30
216591034699	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and, score 7.2e-37
216591034700	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.3e-14
216591034701	HMMPfam hit to PF08448, PAS fold, score 0.0004
216591034702	HMMPfam hit to PF08447, PAS fold, score 0.00099
216591034703	HMMPfam hit to PF00989, PAS fold, score 6.2e-09
216591034704	HMMPfam hit to PF00989, PAS fold, score 0.0058
216591034705	HMMPfam hit to PF01739, CheR methyltransferase, SAM binding do, score 7.5e-72
216591034706	PS00092 N-6 Adenine-specific DNA methylases signature.
216591034707	HMMPfam hit to PF03705, CheR methyltransferase, all-alpha doma, score 5.1e-07
216591034708	HMMPfam hit to PF01339, CheB methylesterase, score 1.2e-10
216591034709	Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]; Region: MntH; cl15845
216591034710	Natural resistance-associated macrophage protein; Region: Nramp; pfam01566
216591034711	11 probable transmembrane helices predicted for BCAS0634 by TMHMM2.0 at aa 27-46, 61-79, 100-119, 134-156, 168-190, 210-232, 256-278, 298-320, 333-355, 365-387 and 408-430
216591034712	HMMPfam hit to PF01566, Natural resistance-associated macrophage pro, score 2.4e-117
216591034713	Manganese catalase, ferritin-like diiron-binding domain; Region: Mn_catalase; cd01051
216591034714	dimanganese center [ion binding]; other site
216591034715	HMMPfam hit to PF05067, Manganese containing catalase, score 8.4e-104
216591034716	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
216591034717	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
216591034718	ring oligomerisation interface [polypeptide binding]; other site
216591034719	ATP/Mg binding site [chemical binding]; other site
216591034720	stacking interactions; other site
216591034721	hinge regions; other site
216591034722	HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin family, score 2.8e-196
216591034723	PS00296 Chaperonins cpn60 signature.
216591034724	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
216591034725	oligomerisation interface [polypeptide binding]; other site
216591034726	mobile loop; other site
216591034727	roof hairpin; other site
216591034728	HMMPfam hit to PF00166, Chaperonin 10 Kd subunit, score 5.3e-47
216591034729	PS00681 Chaperonins cpn10 signature.
216591034730	PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains...; Region: PAP2_acid_phosphatase; cd03397
216591034731	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
216591034732	active site
216591034733	HMMPfam hit to PF01569, PAP2 superfamily, score 3.3e-08
216591034734	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034735	Similar to C-terminal 105 amino acids of D-(-)-3-hydroxybutyrate oligomer hydrolase; truncation of N terminal 636 amino acids; frameshift after codon 57
216591034736	Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase SWALL:Q9I3W5 (EMBL:AE004567) (277 aa) fasta scores: E(): 2.4e-20, 43.11% id in 225 aa; homology doesn't extend to 45 amino acids at C terminus; frameshifts after codons 18 and 52
216591034737	HMMPfam hit to PF00106, short chain dehydrogenase, score 9.7e-07
216591034738	Frameshifts after codons 27, 127 and 145
216591034739	HMMPfam hit to PF00106, short chain dehydrogenase, score 8.5e-16
216591034740	Frameshift after codon 170
216591034741	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 6.8e-15
216591034742	HMMPfam hit to PF03466, LysR substrate binding domain, score 9.4e-31
216591034743	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
216591034744	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
216591034745	non-specific DNA binding site [nucleotide binding]; other site
216591034746	salt bridge; other site
216591034747	sequence-specific DNA binding site [nucleotide binding]; other site
216591034748	Predicted helix-turn-helix motif with score 1194.000, SD 3.25 at aa 17-38, sequence LTQPEFAELGGVHKQAQFHYER
216591034749	Phytoreovirus nonstructural protein Pns10/11; Region: Phytoreo_Pns; pfam05451
216591034750	IS2 transposase TnpB; Reviewed; Region: PRK09409
216591034751	HTH-like domain; Region: HTH_21; pfam13276
216591034752	Integrase core domain; Region: rve; pfam00665
216591034753	Integrase core domain; Region: rve_3; pfam13683
216591034754	HMMPfam hit to PF00665, Integrase core domain, score 2.2e-28
216591034755	Similar to C-terminus Ralstonia solanacearum ISRso10-transposase OrfA protein tisrso10A SWALL:Q8XWY6 (EMBL:AL646069) (88 aa) fasta scores: E(): 2e-10, 90.62% id in 32 aa; homology only extends to 57 C-terminal amino acids. Truncation of N-terminal 56 amino acids
216591034756	Truncation of N-terminal 294 amino acids. Similar to Alcaligenes eutrophus putative transposase tnpA SWALL:Q7WWT0 (EMBL:AY305378) (339 aa) fasta scores: E(): 3.5e-07, 70.27% id in 37 aa
216591034757	HMMPfam hit to PF01527, Transposase, score 6.7e-38
216591034758	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591034759	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591034760	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591034761	HMMPfam hit to PF01548, Transposase, score 0.0011
216591034762	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 1.2e-35
216591034763	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
216591034764	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
216591034765	DNA-binding interface [nucleotide binding]; DNA binding site
216591034766	Integrase core domain; Region: rve; pfam00665
216591034767	HMMPfam hit to PF02796, Helix-turn-helix domain of resolvase, score 0.0028
216591034768	Predicted helix-turn-helix motif with score 2020.000, SD 6.07 at aa 18-39, sequence VSEREIARRLGISRNTVARYLS
216591034769	HMMPfam hit to PF00665, Integrase core domain, score 2.7e-25
216591034770	transposase/IS protein; Provisional; Region: PRK09183
216591034771	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
216591034772	Walker A motif; other site
216591034773	ATP binding site [chemical binding]; other site
216591034774	Walker B motif; other site
216591034775	HMMPfam hit to PF01695, IstB-like ATP binding protein, score 9.6e-88
216591034776	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034777	IS2 transposase TnpB; Reviewed; Region: PRK09409
216591034778	HTH-like domain; Region: HTH_21; pfam13276
216591034779	Integrase core domain; Region: rve; pfam00665
216591034780	Integrase core domain; Region: rve_3; pfam13683
216591034781	Predicted helix-turn-helix motif with score 1005.000, SD 2.61 at aa 12-33, sequence RPVKLVCEVLGVSRSNVSARLS
216591034782	HMMPfam hit to PF00665, Integrase core domain, score 7.4e-29
216591034783	Similar to N terminus of IncL/M plasmid R471a RetA retA SWALL:O52209 (EMBL:AF027768) (495 aa) fasta scores: E(): 2.1e-76, 62.21% id in 307 aa; C terminal 175 amino acids truncated
216591034784	Group II intron - EBS1
216591034785	Group II intron - EBS2
216591034786	truncation of C terminal 13 amino acids
216591034787	HMMPfam hit to PF05717, IS66 Orf2 like protein, score 1.7e-54
216591034788	Group II intron - IBS1
216591034789	Group II intron - IBS2
216591034790	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
216591034791	Transposase; Region: HTH_Tnp_1; pfam01527
216591034792	HMMPfam hit to PF01527, Transposase, score 3.1e-07
216591034793	H-NS histone family; Region: Histone_HNS; pfam00816
216591034794	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
216591034795	HMMPfam hit to PF00816, H-NS histone family, score 8.1e-19
216591034796	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
216591034797	Protein of unknown function (Gmx_para_CXXCG); Region: Gmx_para_CXXCG; cl15282
216591034798	SMI1 / KNR4 family (SUKH-1); Region: SMI1_KNR4; pfam09346
216591034799	PAAR motif; Region: PAAR_motif; pfam05488
216591034800	RHS Repeat; Region: RHS_repeat; cl11982
216591034801	RHS Repeat; Region: RHS_repeat; pfam05593
216591034802	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
216591034803	RHS Repeat; Region: RHS_repeat; pfam05593
216591034804	RHS Repeat; Region: RHS_repeat; cl11982
216591034805	RHS Repeat; Region: RHS_repeat; cl11982
216591034806	RHS protein; Region: RHS; pfam03527
216591034807	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
216591034808	A nuclease of the HNH/ENDO VII superfamily with conserved WHH; Region: WHH; pfam14414
216591034809	HMMPfam hit to PF03527, RHS protein, score 9.1e-07
216591034810	HMMPfam hit to PF05593, RHS Repeat, score 0.00025
216591034811	HMMPfam hit to PF05593, RHS Repeat, score 1.1
216591034812	HMMPfam hit to PF05593, RHS Repeat, score 4.6e-06
216591034813	HMMPfam hit to PF05593, RHS Repeat, score 0.03
216591034814	HMMPfam hit to PF05593, RHS Repeat, score 0.0071
216591034815	HMMPfam hit to PF05593, RHS Repeat, score 0.00012
216591034816	PS00216 Sugar transport proteins signature 1.
216591034817	HMMPfam hit to PF05593, RHS Repeat, score 0.8
216591034818	HMMPfam hit to PF05593, RHS Repeat, score 0.014
216591034819	HMMPfam hit to PF05593, RHS Repeat, score 0.32
216591034820	HMMPfam hit to PF05593, RHS Repeat, score 7.7e-05
216591034821	HMMPfam hit to PF05593, RHS Repeat, score 0.11
216591034822	HMMPfam hit to PF05593, RHS Repeat, score 0.0027
216591034823	HMMPfam hit to PF05488, PAAR motif, score 2.2e-09
216591034824	HMMPfam hit to PF05488, PAAR motif, score 5.3e-05
216591034825	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034826	2 probable transmembrane helices predicted for BCAS0663 by TMHMM2.0 at aa 15-37 and 42-64
216591034827	Domain of unknown function (DUF1795); Region: DUF1795; pfam08786
216591034828	4 probable transmembrane helices predicted for BCAS0665 by TMHMM2.0 at aa 16-35, 50-72, 85-104 and 114-136
216591034829	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034830	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
216591034831	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
216591034832	Ankyrin repeats (many copies); Region: Ank_4; pfam13637
216591034833	HMMPfam hit to PF00023, Ankyrin repeat, score 0.0046
216591034834	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034835	HMMPfam hit to PF00023, Ankyrin repeat, score 0.00021
216591034836	HMMPfam hit to PF00023, Ankyrin repeat, score 2.1
216591034837	1 probable transmembrane helix predicted for BCAS0666 by TMHMM2.0 at aa 7-26
216591034838	type VI secretion system Vgr family protein; Region: VI_Rhs_Vgr; TIGR03361
216591034839	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
216591034840	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
216591034841	PS00120 Lipases, serine active site.
216591034842	HMMPfam hit to PF04524, Protein of unknown function, DUF586, score 2.4e-38
216591034843	Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3519
216591034844	Bacterial protein of unknown function (DUF879); Region: DUF879; pfam05947
216591034845	HMMPfam hit to PF05947, Bacterial protein of unknown function (DUF87, score 3.2e-78
216591034846	Lecithin retinol acyltransferase; Region: LRAT; pfam04970
216591034847	2 probable transmembrane helices predicted for BCAS0671 by TMHMM2.0 at aa 189-211 and 216-238
216591034848	RES domain; Region: RES; cl02411
216591034849	TniQ; Region: TniQ; pfam06527
216591034850	Bacterial TniB protein; Region: TniB; pfam05621
216591034851	AAA domain; Region: AAA_22; pfam13401
216591034852	HMMPfam hit to PF05621, Bacterial TniB protein, score 7.4e-61
216591034853	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034854	HMMPfam hit to PF00665, Integrase core domain, score 3.1e-19
216591034855	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
216591034856	Transposase; Region: DEDD_Tnp_IS110; pfam01548
216591034857	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
216591034858	HMMPfam hit to PF01548, Transposase, score 0.001
216591034859	HMMPfam hit to PF02371, Transposase IS116/IS110/IS902 family, score 1.5e-42
216591034860	N-terminus truncated by 289 amino acids. Frameshift after codon 130
216591034861	6 probable transmembrane helices predicted for BCAS0687 by TMHMM2.0 at aa 20-37, 80-102, 115-137, 142-161, 170-192 and 207-229
216591034862	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591034863	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
216591034864	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591034865	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 1.2e-06
216591034866	Predicted helix-turn-helix motif with score 1135.000, SD 3.05 at aa 28-49, sequence TSLQQLEQATGVNKSGLYSEFE
216591034867	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
216591034868	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 6.3e-12
216591034869	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
216591034870	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591034871	putative substrate translocation pore; other site
216591034872	12 probable transmembrane helices predicted for BCAS0690 by TMHMM2.0 at aa 12-34, 49-71, 78-97, 102-124, 137-159, 164-186, 212-234, 244-263, 270-292, 297-319, 332-354 and 359-381
216591034873	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.1e-31
216591034874	LrgA family; Region: LrgA; pfam03788
216591034875	HMMPfam hit to PF03788, LrgA family, score 4.3e-20
216591034876	3 probable transmembrane helices predicted for BCAS0691 by TMHMM2.0 at aa 20-42, 57-76 and 83-105
216591034877	LrgB-like family; Region: LrgB; cl00596
216591034878	6 probable transmembrane helices predicted for BCAS0692 by TMHMM2.0 at aa 5-27, 40-62, 67-89, 102-121, 156-178 and 214-236
216591034879	HMMPfam hit to PF04172, LrgB-like family, score 3.1e-61
216591034880	Uncharacterized conserved protein [Function unknown]; Region: COG1359
216591034881	HMMPfam hit to PF03992, Antibiotic biosynthesis monooxygenase, score 2.2e-17
216591034882	uncharacterized peroxidase-related enzyme; Region: peroxid_rel; TIGR01926
216591034883	Carboxymuconolactone decarboxylase family; Region: CMD; pfam02627
216591034884	HMMPfam hit to PF02627, Carboxymuconolactone decarboxylase family, score 1.7e-07
216591034885	BON domain; Region: BON; pfam04972
216591034886	HMMPfam hit to PF04972, Putative phospholipid-binding domain, score 0.00011
216591034887	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591034888	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591034889	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591034890	putative effector binding pocket; other site
216591034891	dimerization interface [polypeptide binding]; other site
216591034892	HMMPfam hit to PF03466, LysR substrate binding domain, score 6.5e-37
216591034893	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 3.6e-15
216591034894	Predicted helix-turn-helix motif with score 1148.000, SD 3.10 at aa 17-38, sequence GSFSSAAREADLLPGQVSAAIQ
216591034895	Arginate lyase and other MDR family members; Region: AL_MDR; cd08252
216591034896	zinc-binding alcohol dehydrogenase family protein; Region: adh_fam_1; TIGR02817
216591034897	putative NAD(P) binding site [chemical binding]; other site
216591034898	dimer interface [polypeptide binding]; other site
216591034899	HMMPfam hit to PF08240, Alcohol dehydrogenase GroES-like domain, score 4.2e-19
216591034900	HMMPfam hit to PF00107, Zinc-binding dehydrogenase, score 5.4e-11
216591034901	PS01162 Quinone oxidoreductase / zeta-crystallin signature.
216591034902	Major royal jelly protein; Region: MRJP; pfam03022
216591034903	1 probable transmembrane helix predicted for BCAS0699 by TMHMM2.0 at aa 13-35
216591034904	HMMPfam hit to PF03022, Major royal jelly protein, score 3.8e-20
216591034905	NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family...; Region: NfsB_like_nitroreductase; cd02149
216591034906	dimer interface [polypeptide binding]; other site
216591034907	FMN binding site [chemical binding]; other site
216591034908	HMMPfam hit to PF00881, Nitroreductase family, score 9.7e-46
216591034909	1 probable transmembrane helix predicted for BCAS0700 by TMHMM2.0 at aa 143-162
216591034910	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
216591034911	EamA-like transporter family; Region: EamA; pfam00892
216591034912	10 probable transmembrane helices predicted for BCAS0701 by TMHMM2.0 at aa 21-38, 48-70, 83-105, 115-132, 139-157, 167-189, 196-218, 228-250, 257-279 and 283-305
216591034913	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 1.2e-19
216591034914	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 0.00074
216591034915	Substrate binding domain of ABC-type glycine betaine transport system; Region: OpuAC; pfam04069
216591034916	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; cl17891
216591034917	HMMPfam hit to PF04069, Substrate binding domain of ABC-type glycine, score 8.9e-28
216591034918	Short-chain dehydrogenases of various substrate specificities [General function prediction only]; Region: DltE; COG0300
216591034919	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591034920	NAD(P) binding site [chemical binding]; other site
216591034921	active site
216591034922	HMMPfam hit to PF00106, short chain dehydrogenase, score 3.2e-29
216591034923	PS00061 Short-chain dehydrogenases/reductases family signature.
216591034924	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
216591034925	Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]; Region: DltE; COG3967
216591034926	NAD(P) binding site [chemical binding]; other site
216591034927	active site
216591034928	HMMPfam hit to PF00106, short chain dehydrogenase, score 1.2e-27
216591034929	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.00037
216591034930	PS00061 Short-chain dehydrogenases/reductases family signature.
216591034931	mercuric reductase; Validated; Region: PRK06370
216591034932	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
216591034933	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
216591034934	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidored, score 3e-34
216591034935	PS00017 ATP/GTP-binding site motif A (P-loop).
216591034936	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidored, score 4.7e-27
216591034937	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidored, score 5.8e-32
216591034938	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
216591034939	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
216591034940	putative substrate translocation pore; other site
216591034941	12 probable transmembrane helices predicted for BCAS0706 by TMHMM2.0 at aa 32-51, 66-88, 101-120, 125-147, 159-181, 191-213, 257-279, 294-313, 325-344, 348-370, 382-404 and 414-436
216591034942	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 5e-48
216591034943	Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566
216591034944	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591034945	active site
216591034946	phosphorylation site [posttranslational modification]
216591034947	intermolecular recognition site; other site
216591034948	dimerization interface [polypeptide binding]; other site
216591034949	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
216591034950	DNA binding residues [nucleotide binding]
216591034951	dimerization interface [polypeptide binding]; other site
216591034952	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR fami, score 5.6e-21
216591034953	HMMPfam hit to PF08281, Sigma-70, region, score 1.8e-07
216591034954	PS00622 Bacterial regulatory proteins, luxR family signature.
216591034955	HMMPfam hit to PF00072, Response regulator receiver domain, score 6.5e-27
216591034956	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591034957	nitrogen fixation negative regulator NifL; Region: nifL_nitrog; TIGR02938
216591034958	putative active site [active]
216591034959	heme pocket [chemical binding]; other site
216591034960	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
216591034961	putative active site [active]
216591034962	heme pocket [chemical binding]; other site
216591034963	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
216591034964	dimer interface [polypeptide binding]; other site
216591034965	phosphorylation site [posttranslational modification]
216591034966	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
216591034967	ATP binding site [chemical binding]; other site
216591034968	Mg2+ binding site [ion binding]; other site
216591034969	G-X-G motif; other site
216591034970	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 5.8e-33
216591034971	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 2.1e-11
216591034972	HMMPfam hit to PF08448, PAS fold, score 6.2e-05
216591034973	HMMPfam hit to PF08447, PAS fold, score 1.7e-15
216591034974	HMMPfam hit to PF00989, PAS fold, score 1.6e-05
216591034975	PS00037 Myb DNA-binding domain repeat signature 1.
216591034976	HMMPfam hit to PF08448, PAS fold, score 5.9e-08
216591034977	HMMPfam hit to PF08447, PAS fold, score 9.4e-08
216591034978	HMMPfam hit to PF00989, PAS fold, score 1.5e-07
216591034979	3 probable transmembrane helices predicted for BCAS0708 by TMHMM2.0 at aa 45-67, 77-108 and 115-137
216591034980	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
216591034981	Response regulator receiver domain; Region: Response_reg; pfam00072
216591034982	active site
216591034983	phosphorylation site [posttranslational modification]
216591034984	intermolecular recognition site; other site
216591034985	dimerization interface [polypeptide binding]; other site
216591034986	HMMPfam hit to PF00072, Response regulator receiver domain, score 9.6e-24
216591034987	transcriptional regulator; Provisional; Region: PRK10632
216591034988	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591034989	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591034990	dimerization interface [polypeptide binding]; other site
216591034991	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.6e-35
216591034992	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1.9e-17
216591034993	PS00044 Bacterial regulatory proteins, lysR family signature.
216591034994	Predicted helix-turn-helix motif with score 1281.000, SD 3.55 at aa 18-39, sequence GSFTAAADMLGISAASASTLVR
216591034995	2-oxoacid dehydrogenase subunit E1; Provisional; Region: PRK13012
216591034996	Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative...; Region: TPP_E1_EcPDC_like; cd02017
216591034997	dimer interface [polypeptide binding]; other site
216591034998	TPP-binding site [chemical binding]; other site
216591034999	Transketolase, pyrimidine binding domain; Region: Transket_pyr; smart00861
216591035000	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
216591035001	AsnC-type helix-turn-helix domain; Region: HTH_AsnC-type; pfam13404
216591035002	putative DNA binding site [nucleotide binding]; other site
216591035003	putative Zn2+ binding site [ion binding]; other site
216591035004	AsnC family; Region: AsnC_trans_reg; pfam01037
216591035005	Predicted helix-turn-helix motif with score 975.000, SD 2.51 at aa 29-50, sequence ITNAELARAVNLSSTPCFNRVR
216591035006	PS00519 Bacterial regulatory proteins, asnC family signature.
216591035007	HMMPfam hit to PF01037, AsnC family, score 2.8e-34
216591035008	short chain dehydrogenase; Provisional; Region: PRK06482
216591035009	17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374
216591035010	NADP binding site [chemical binding]; other site
216591035011	active site
216591035012	steroid binding site; other site
216591035013	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0017
216591035014	HMMPfam hit to PF00106, short chain dehydrogenase, score 5.8e-18
216591035015	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591035016	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591035017	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474
216591035018	putative effector binding pocket; other site
216591035019	putative dimerization interface [polypeptide binding]; other site
216591035020	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.3e-20
216591035021	Predicted helix-turn-helix motif with score 1359.000, SD 3.82 at aa 20-41, sequence RSFRKAAEELELAASTLSHMMR
216591035022	PS00044 Bacterial regulatory proteins, lysR family signature.
216591035023	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.8e-52
216591035024	Restriction endonuclease; Region: Mrr_cat; pfam04471
216591035025	HMMPfam hit to PF04471, Restriction endonuclease, score 1.8e-11
216591035026	AAA ATPase domain; Region: AAA_16; pfam13191
216591035027	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035028	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035029	Transposase; Region: HTH_Tnp_1; pfam01527
216591035030	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591035031	CDS lacks appropriate translational start site. It is likely that this CDS encodes the C-terminal region of a larger protein encompassing the upstream CDS. A translational frameshift possibly occurs after residue 86 of the upstream overlapping CDS
216591035032	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591035033	truncated by IS element insertion after codon 325
216591035034	Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme; Region: NT_2-5OAS_ClassI-CCAase; cd05400
216591035035	active site
216591035036	NTP binding site [chemical binding]; other site
216591035037	metal binding triad [ion binding]; metal-binding site
216591035038	Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17; Region: Pat17_PNPLA8_PNPLA9_like; cd07199
216591035039	active site
216591035040	nucleophile elbow; other site
216591035041	HMMPfam hit to PF01734, Patatin-like phospholipase, score 2.3e-32
216591035042	Protein of unknown function (DUF1016); Region: DUF1016; pfam06250
216591035043	Predicted nuclease of restriction endonuclease-like fold [General    function prediction only]; Region: COG4804
216591035044	HMMPfam hit to PF06250, Protein of unknown function (DUF1016), score 7e-179
216591035045	methionine sulfoxide reductase B; Provisional; Region: PRK00222
216591035046	SelR domain; Region: SelR; pfam01641
216591035047	1 probable transmembrane helix predicted for BCAS0724 by TMHMM2.0 at aa 7-24
216591035048	HMMPfam hit to PF01641, SelR domain, score 1.9e-68
216591035049	Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]; Region: CcdA; COG0785
216591035050	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
216591035051	TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA...; Region: TlpA_like_DipZ_like; cd03012
216591035052	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
216591035053	catalytic residues [active]
216591035054	5 probable transmembrane helices predicted for BCAS0725 by TMHMM2.0 at aa 5-27, 42-64, 73-92, 123-145 and 158-180
216591035055	HMMPfam hit to PF02683, Cytochrome C biogenesis protein transmembran, score 1e-07
216591035056	HMMPfam hit to PF08534, Redoxin, score 4.6e-05
216591035057	methionine sulfoxide reductase A; Provisional; Region: PRK13014
216591035058	1 probable transmembrane helix predicted for BCAS0726 by TMHMM2.0 at aa 21-38
216591035059	HMMPfam hit to PF01625, Peptide methionine sulfoxide reductase, score 2.4e-75
216591035060	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
216591035061	Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469
216591035062	[2Fe-2S] cluster binding site [ion binding]; other site
216591035063	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, score 6.2e-25
216591035064	Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283
216591035065	active site
216591035066	catalytic motif [active]
216591035067	Zn binding site [ion binding]; other site
216591035068	HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminas, score 3.9e-22
216591035069	PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.
216591035070	thymidine phosphorylase; Reviewed; Region: deoA; PRK05820
216591035071	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
216591035072	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
216591035073	Pyrimidine nucleoside phosphorylase C-terminal domain; Region: PYNP_C; smart00941
216591035074	HMMPfam hit to PF07831, Pyrimidine nucleoside phosphorylase C, score 2.2e-23
216591035075	HMMPfam hit to PF00591, Glycosyl transferase family, a/b doma, score 4.3e-41
216591035076	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035077	HMMPfam hit to PF02885, Glycosyl transferase family, helical, score 5.9e-11
216591035078	Nucleoside permease [Nucleotide transport and metabolism]; Region: NupC; COG1972
216591035079	Na+ dependent nucleoside transporter N-terminus; Region: Nucleos_tra2_N; pfam01773
216591035080	Nucleoside recognition; Region: Gate; pfam07670
216591035081	Na+ dependent nucleoside transporter C-terminus; Region: Nucleos_tra2_C; pfam07662
216591035082	HMMPfam hit to PF07662, Na+ dependent nucleoside transporter C, score 4.5e-90
216591035083	10 probable transmembrane helices predicted for BCAS0730 by TMHMM2.0 at aa 4-21, 33-55, 96-118, 131-153, 173-195, 202-224, 258-280, 287-309, 363-385 and 398-420
216591035084	HMMPfam hit to PF07670, Nucleoside recognition, score 5.4e-10
216591035085	HMMPfam hit to PF01773, Na+ dependent nucleoside transporter N, score 1.1e-22
216591035086	phenylhydantoinase; Validated; Region: PRK08323
216591035087	D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine...; Region: D-HYD; cd01314
216591035088	tetramer interface [polypeptide binding]; other site
216591035089	active site
216591035090	HMMPfam hit to PF01979, Amidohydrolase family, score 1.5e-11
216591035091	HMMPfam hit to PF07969, Amidohydrolase family, score 0.00036
216591035092	uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily, YbbW-like; solute-binding domain; Region: SLC-NCS1sbd_YbbW-like; cd11485
216591035093	Permease for cytosine/purines, uracil, thiamine, allantoin; Region: Transp_cyt_pur; pfam02133
216591035094	Na binding site [ion binding]; other site
216591035095	putative substrate binding site [chemical binding]; other site
216591035096	12 probable transmembrane helices predicted for BCAS0732 by TMHMM2.0 at aa 39-61, 71-93, 120-142, 157-179, 188-210, 235-257, 277-299, 319-341, 354-376, 386-408, 429-451 and 466-488
216591035097	HMMPfam hit to PF02133, Permease for cytosine/purines, uracil,, score 1.5e-130
216591035098	dihydropyrimidine dehydrogenase subunit B; Validated; Region: PRK08318
216591035099	Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and...; Region: DHPD_FMN; cd02940
216591035100	homodimer interface [polypeptide binding]; other site
216591035101	active site
216591035102	FMN binding site [chemical binding]; other site
216591035103	substrate binding site [chemical binding]; other site
216591035104	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
216591035105	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.00079
216591035106	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591035107	HMMPfam hit to PF00037, 4Fe-4S binding domain, score 0.00045
216591035108	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
216591035109	PS00190 Cytochrome c family heme-binding site signature.
216591035110	HMMPfam hit to PF01180, Dihydroorotate dehydrogenase, score 1.9e-11
216591035111	dihydropyrimidine dehydrogenase subunit A; Provisional; Region: PRK11749
216591035112	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 0.00071
216591035113	HMMPfam hit to PF07992, Pyridine nucleotide-disulphide oxidoreduc, score 2.6e-19
216591035114	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 9.3e-11
216591035115	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreduc, score 0.00074
216591035116	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035117	allantoate amidohydrolase; Reviewed; Region: PRK12893
216591035118	M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884
216591035119	active site
216591035120	metal binding site [ion binding]; metal-binding site
216591035121	dimer interface [polypeptide binding]; other site
216591035122	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 1e-43
216591035123	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 0.0052
216591035124	pyrimidine utilization regulatory protein R; Region: RutR; TIGR03613
216591035125	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
216591035126	YcdC-like protein, C-terminal region; Region: TetR_C_3; pfam08362
216591035127	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 2.6e-15
216591035128	Predicted helix-turn-helix motif with score 1091.000, SD 2.90 at aa 51-72, sequence ASTAMIAERAGLPKANVHYYFP
216591035129	HMMPfam hit to PF08362, YcdC-like protein, C-terminal region, score 4.1e-76
216591035130	acetyl-CoA acetyltransferase; Provisional; Region: PRK06954
216591035131	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
216591035132	dimer interface [polypeptide binding]; other site
216591035133	active site
216591035134	HMMPfam hit to PF02803, Thiolase, C-terminal domain, score 8e-55
216591035135	PS00099 Thiolases active site.
216591035136	HMMPfam hit to PF00108, Thiolase, N-terminal domain, score 5e-118
216591035137	3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK08217
216591035138	17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; Region: HSD10-like_SDR_c; cd05371
216591035139	NAD binding site [chemical binding]; other site
216591035140	homodimer interface [polypeptide binding]; other site
216591035141	homotetramer interface [polypeptide binding]; other site
216591035142	active site
216591035143	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 0.0018
216591035144	HMMPfam hit to PF00106, short chain dehydrogenase, score 6.8e-27
216591035145	PS00061 Short-chain dehydrogenases/reductases family signature.
216591035146	1 probable transmembrane helix predicted for BCAS0738 by TMHMM2.0 at aa 7-26
216591035147	Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]; Region: Acs; COG0365
216591035148	Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS); Region: MACS_like_2; cd05973
216591035149	active site
216591035150	acyl-activating enzyme (AAE) consensus motif; other site
216591035151	putative CoA binding site [chemical binding]; other site
216591035152	AMP binding site [chemical binding]; other site
216591035153	HMMPfam hit to PF00501, AMP-binding enzyme, score 9.4e-109
216591035154	PS00455 Putative AMP-binding domain signature.
216591035155	Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625
216591035156	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
216591035157	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591035158	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035159	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 5e-12
216591035160	5 probable transmembrane helices predicted for BCAS0741 by TMHMM2.0 at aa 59-81, 88-110, 115-134, 194-213 and 217-239
216591035161	SnoaL-like domain; Region: SnoaL_3; pfam13474
216591035162	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
216591035163	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
216591035164	Coenzyme A binding pocket [chemical binding]; other site
216591035165	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.2e-08
216591035166	Protein of unknown function (DUF429); Region: DUF429; pfam04250
216591035167	Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317
216591035168	HD domain; Region: HD_4; pfam13328
216591035169	HMMPfam hit to PF01966, HD domain, score 2.3e-09
216591035170	P-loop containing region of AAA domain; Region: AAA_29; cl17516
216591035171	AAA domain; Region: AAA_23; pfam13476
216591035172	AAA domain; Region: AAA_27; pfam13514
216591035173	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035174	DNA repair exonuclease [DNA replication, recombination, and repair]; Region: SbcD; COG0420
216591035175	Mre11 nuclease, N-terminal metallophosphatase domain; Region: MPP_Mre11_N; cd00840
216591035176	active site
216591035177	metal binding site [ion binding]; metal-binding site
216591035178	DNA binding site [nucleotide binding]
216591035179	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 1.1e-11
216591035180	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035181	HMMPfam hit to PF02987, Late embryogenesis abundant protein, score 0.00019
216591035182	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035183	Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; COG0405
216591035184	Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019
216591035185	HMMPfam hit to PF01019, Gamma-glutamyltranspeptidase, score 2.2e-168
216591035186	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035187	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035188	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591035189	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591035190	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591035191	dimerization interface [polypeptide binding]; other site
216591035192	HMMPfam hit to PF03466, LysR substrate binding domain, score 1.9e-39
216591035193	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.7e-19
216591035194	PS00044 Bacterial regulatory proteins, lysR family signature.
216591035195	Predicted helix-turn-helix motif with score 1630.000, SD 4.74 at aa 18-39, sequence GSLRKAADALHLTAAAVHQQIR
216591035196	Arylsulfotransferase (ASST); Region: Arylsulfotrans; pfam05935
216591035197	xanthine permease; Region: pbuX; TIGR03173
216591035198	HMMPfam hit to PF00860, Permease family, score 1e-51
216591035199	12 probable transmembrane helices predicted for BCAS0754 by TMHMM2.0 at aa 20-42, 55-77, 103-125, 132-154, 169-188, 195-217, 244-266, 287-305, 320-342, 349-371, 381-403 and 410-432
216591035200	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035201	PS01116 Xanthine/uracil permeases family signature.
216591035202	Predicted small integral membrane protein (DUF2165); Region: DUF2165; pfam09933
216591035203	4 probable transmembrane helices predicted for BCAS0755 by TMHMM2.0 at aa 5-27, 63-85, 105-127 and 142-159
216591035204	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
216591035205	active site
216591035206	Int/Topo IB signature motif; other site
216591035207	catalytic residues [active]
216591035208	DNA binding site [nucleotide binding]
216591035209	HMMPfam hit to PF00589, Phage integrase family, score 0.0017
216591035210	RES domain; Region: RES; pfam08808
216591035211	putative toxin-antitoxin system antitoxin component, TIGR02293 family; Region: TAS_TIGR02293
216591035212	Protein of unknown function (DUF2384); Region: DUF2384; pfam09722
216591035213	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
216591035214	PS00888 Cyclic nucleotide-binding domain signature 1.
216591035215	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035216	6 probable transmembrane helices predicted for BCAS0759 by TMHMM2.0 at aa 4108-4130, 4273-4295, 4300-4322, 4335-4357, 4362-4384 and 4396-4418
216591035217	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
216591035218	Zn2+ binding site [ion binding]; other site
216591035219	Mg2+ binding site [ion binding]; other site
216591035220	HMMPfam hit to PF01966, HD domain, score 6.6e-06
216591035221	Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977
216591035222	AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137
216591035223	conserved cys residue [active]
216591035224	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591035225	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591035226	PS00430 TonB-dependent receptor proteins signature 1.
216591035227	HMMPfam hit to PF01965, DJ-1/PfpI family, score 4.8e-24
216591035228	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 3.7e-10
216591035229	Predicted helix-turn-helix motif with score 1058.000, SD 2.79 at aa 231-252, sequence HSVAGMAKHAGMSPRHFARLFR
216591035230	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix prote, score 7.7e-09
216591035231	Domain of unknown function (DUF4148); Region: DUF4148; pfam13663
216591035232	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
216591035233	HMMPfam hit to PF01738, Dienelactone hydrolase family, score 9.9e-58
216591035234	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
216591035235	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.2e-50
216591035236	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.5e-46
216591035237	1 probable transmembrane helix predicted for BCAS0764 by TMHMM2.0 at aa 5-27
216591035238	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035239	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915
216591035240	Protein export membrane protein; Region: SecD_SecF; cl14618
216591035241	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score 0
216591035242	12 probable transmembrane helices predicted for BCAS0765 by TMHMM2.0 at aa 9-28, 340-359, 366-388, 392-414, 438-460, 470-492, 540-559, 869-891, 898-920, 926-948, 969-991 and 1006-1028
216591035243	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035244	periplasmic multidrug efflux lipoprotein precursor; Reviewed; Region: PRK09578
216591035245	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
216591035246	HlyD family secretion protein; Region: HlyD_3; pfam13437
216591035247	HMMPfam hit to PF00529, HlyD family secretion protein, score 1e-56
216591035248	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035249	Transcriptional regulator [Transcription]; Region: LysR; COG0583
216591035250	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591035251	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
216591035252	dimerization interface [polypeptide binding]; other site
216591035253	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.4e-24
216591035254	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 4.9e-14
216591035255	PS00044 Bacterial regulatory proteins, lysR family signature.
216591035256	AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719
216591035257	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
216591035258	Helix-turn-helix domain; Region: HTH_18; pfam12833
216591035259	HMMPfam hit to PF06719, AraC-type transcriptional regulator N-termin, score 2.2e-20
216591035260	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 7e-07
216591035261	Predicted helix-turn-helix motif with score 1331.000, SD 3.72 at aa 230-251, sequence MVVDSLARQVEMSPSTFHHHFR
216591035262	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
216591035263	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
216591035264	substrate binding pocket [chemical binding]; other site
216591035265	membrane-bound complex binding site; other site
216591035266	hinge residues; other site
216591035267	1 probable transmembrane helix predicted for BCAS0769 by TMHMM2.0 at aa 12-34
216591035268	transcriptional regulator; Provisional; Region: PRK10632
216591035269	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591035270	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
216591035271	putative effector binding pocket; other site
216591035272	dimerization interface [polypeptide binding]; other site
216591035273	HMMPfam hit to PF03466, LysR substrate binding domain, score 4.2e-42
216591035274	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 2.2e-20
216591035275	Predicted helix-turn-helix motif with score 1067.000, SD 2.82 at aa 17-38, sequence GSFTSAAQRLDITTAYASRSVA
216591035276	Adenylosuccinate synthetase; Region: Adenylsucc_synt; smart00788
216591035277	Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the...; Region: AdSS; cd03108
216591035278	GDP-binding site [chemical binding]; other site
216591035279	ACT binding site; other site
216591035280	IMP binding site; other site
216591035281	HMMPfam hit to PF00709, Adenylosuccinate synthetase, score 2.1e-246
216591035282	PS00513 Adenylosuccinate synthetase active site.
216591035283	PS01266 Adenylosuccinate synthetase GTP-binding site.
216591035284	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
216591035285	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
216591035286	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
216591035287	dimerization interface [polypeptide binding]; other site
216591035288	substrate binding pocket [chemical binding]; other site
216591035289	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 1e-21
216591035290	Predicted helix-turn-helix motif with score 1734.000, SD 5.09 at aa 21-42, sequence GSFTLAADELCVTHGAISRHVQ
216591035291	PS00044 Bacterial regulatory proteins, lysR family signature.
216591035292	HMMPfam hit to PF03466, LysR substrate binding domain, score 5.8e-41
216591035293	ParA-like protein; Provisional; Region: PHA02518
216591035294	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
216591035295	P-loop; other site
216591035296	Magnesium ion binding site [ion binding]; other site
216591035297	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035298	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
216591035299	HMMPfam hit to PF02195, ParB-like nuclease domain, score 6.4e-09
216591035300	Replication initiator protein A; Region: RPA; cl17860
216591035301	HMMPfam hit to PF07042, TrfA protein, score 3.2e-18
216591035302	error-prone DNA polymerase; Validated; Region: dnaE2; PRK05672
216591035303	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at DnaE2 gene; Region: PHP_PolIIIA_DnaE2; cd07434
216591035304	putative active site [active]
216591035305	putative PHP Thumb interface [polypeptide binding]; other site
216591035306	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
216591035307	generic binding surface II; other site
216591035308	generic binding surface I; other site
216591035309	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 5.5e-08
216591035310	PS00211 ABC transporters family signature.
216591035311	HMMPfam hit to PF07733, Bacterial DNA polymerase III alpha sub, score 8.6e-239
216591035312	HMMPfam hit to PF02811, PHP domain, score 4.9e-06
216591035313	DNA Polymerase Y-family; Region: PolY_like; cd03468
216591035314	active site
216591035315	DNA binding site [nucleotide binding]
216591035316	Uncharacterized conserved protein [Function unknown]; Region: COG4544
216591035317	RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651
216591035318	Reverse transcriptase (RNA-dependent DNA polymerase); Region: RVT_1; pfam00078
216591035319	putative active site [active]
216591035320	putative NTP binding site [chemical binding]; other site
216591035321	putative nucleic acid binding site [nucleotide binding]; other site
216591035322	HMMPfam hit to PF00078, Reverse transcriptase (RNA-dependent DNA pol, score 1.5e-62
216591035323	Uncharacterized ACR, COG2135; Region: DUF159; pfam02586
216591035324	4 probable transmembrane helices predicted for pBS010 by TMHMM2.0 at aa 7-26, 31-48, 111-133 and 169-188
216591035325	C-terminal region is similar to Escherichia coli O6 putative adhesin c4424 SWALL:Q8FCB2 (EMBL:AE016768) (1778 aa) fasta scores: E(): 3.5e-33, 29.02% id in 1795 aa. CDS contains a probable frameshift mutation
216591035326	HMMPfam hit to PF03895, YadA-like C-terminal region, score 1.2e-15
216591035327	HMMPfam hit to PF05658, Hep_Hag, score 0.00015
216591035328	HMMPfam hit to PF05658, Hep_Hag, score 0.0023
216591035329	HMMPfam hit to PF05662, Haemagglutinin, score 4.6e-06
216591035330	HMMPfam hit to PF05662, Haemagglutinin, score 1.7e-05
216591035331	HMMPfam hit to PF05662, Haemagglutinin, score 1.3e-05
216591035332	HMMPfam hit to PF05662, Haemagglutinin, score 0.00012
216591035333	HMMPfam hit to PF05662, Haemagglutinin, score 1.3e-05
216591035334	HMMPfam hit to PF05662, Haemagglutinin, score 1.4e-05
216591035335	HMMPfam hit to PF05662, Haemagglutinin, score 7e-06
216591035336	HMMPfam hit to PF05662, Haemagglutinin, score 0.0001
216591035337	HMMPfam hit to PF05662, Haemagglutinin, score 3e-05
216591035338	HMMPfam hit to PF05662, Haemagglutinin, score 6.4e-05
216591035339	HMMPfam hit to PF05662, Haemagglutinin, score 1.8e-05
216591035340	HMMPfam hit to PF05658, Hep_Hag, score 0.15
216591035341	HMMPfam hit to PF05658, Hep_Hag, score 1.1
216591035342	HMMPfam hit to PF05658, Hep_Hag, score 0.85
216591035343	HMMPfam hit to PF05658, Hep_Hag, score 3e-05
216591035344	Bacterial PH domain; Region: DUF304; pfam03703
216591035345	2 probable transmembrane helices predicted for pBS014 by TMHMM2.0 at aa 13-35 and 45-64
216591035346	Protein of unknown function (DUF1173); Region: DUF1173; pfam06666
216591035347	HMMPfam hit to PF06666, Protein of unknown function (DUF1173), score 1.1e-140
216591035348	Zeta toxin; Region: Zeta_toxin; pfam06414
216591035349	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4185
216591035350	HMMPfam hit to PF06414, Zeta toxin, score 9.5e-62
216591035351	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035352	2 probable transmembrane helices predicted for pBS019 by TMHMM2.0 at aa 61-83 and 93-110
216591035353	TraG-like protein, N-terminal region; Region: TraG_N; pfam07916
216591035354	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cl00474
216591035355	HMMPfam hit to PF07916, TraG-like protein, N-terminal region, score 1.3e-52
216591035356	5 probable transmembrane helices predicted for pBS020 by TMHMM2.0 at aa 26-48, 58-80, 337-359, 369-391 and 424-441
216591035357	Conjugative relaxosome accessory transposon protein; Region: TraH; pfam06122
216591035358	HMMPfam hit to PF06122, TraH protein, score 1.1e-71
216591035359	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035360	Phage protein Gp37/Gp68; Region: Gp37_Gp68; cl15384
216591035361	HMMPfam hit to PF07505, Phage protein Gp37/Gp68, score 6.7e-108
216591035362	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
216591035363	active site
216591035364	HMMPfam hit to PF01844, HNH endonuclease, score 3e-07
216591035365	F plasmid transfer operon protein; Region: TraF; pfam13728
216591035366	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
216591035367	catalytic residues [active]
216591035368	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
216591035369	conjugal transfer mating pair stabilization protein TraN; Reviewed; Region: PRK12355
216591035370	conjugal transfer mating pair stabilization protein TraN; Reviewed; Region: PRK12355
216591035371	2 probable transmembrane helices predicted for pBS029 by TMHMM2.0 at aa 12-34 and 44-66
216591035372	Type-F conjugative transfer system pilin assembly protein; Region: TrbC_Ftype; pfam09673
216591035373	1 probable transmembrane helix predicted for pBS030 by TMHMM2.0 at aa 13-35
216591035374	TraU protein; Region: TraU; pfam06834
216591035375	HMMPfam hit to PF06834, TraU protein, score 6.8e-147
216591035376	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035377	Sex factor F TraW protein N terminal; Region: TraW_N; cl10149
216591035378	conjugal transfer pilin processing protease TraF; Provisional; Region: PRK13838
216591035379	conjugative transfer signal peptidase TraF; Region: TraF_Ti; TIGR02771
216591035380	HMMPfam hit to PF00717, Peptidase S24-like, score 0.02
216591035381	PS00760 Signal peptidases I lysine active site.
216591035382	1 probable transmembrane helix predicted for pBS033 by TMHMM2.0 at aa 20-42
216591035383	2 probable transmembrane helices predicted for pBS034 by TMHMM2.0 at aa 7-29 and 33-52
216591035384	Transcriptional regulators [Transcription]; Region: FadR; COG2186
216591035385	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
216591035386	DNA-binding site [nucleotide binding]; DNA binding site
216591035387	HMMPfam hit to PF07729, FCD domain, score 0.00029
216591035388	HMMPfam hit to PF00392, Bacterial regulatory proteins, gntR family, score 2.1e-10
216591035389	PS00043 Bacterial regulatory proteins, gntR family signature.
216591035390	Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins; Region: PLDc_Nuc; cd09170
216591035391	PLD-like domain; Region: PLDc_2; pfam13091
216591035392	putative active site [active]
216591035393	catalytic site [active]
216591035394	1 probable transmembrane helix predicted for pBS036 by TMHMM2.0 at aa 13-35
216591035395	3 probable transmembrane helices predicted for pBS037 by TMHMM2.0 at aa 10-32, 44-66 and 76-98
216591035396	F pilus assembly Type-IV secretion system for plasmid transfer; Region: TraC_F_IV; pfam11130
216591035397	type-IV secretion system protein TraC; Region: TraC-F-type; TIGR02746
216591035398	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
216591035399	Walker A motif; other site
216591035400	ATP binding site [chemical binding]; other site
216591035401	Walker B motif; other site
216591035402	PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.
216591035403	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035404	Type IV conjugative transfer system lipoprotein (TraV); Region: TraV; pfam09676
216591035405	DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds...; Region: DsbA_DsbC_DsbG; cd03020
216591035406	dimerization domain [polypeptide binding]; other site
216591035407	dimer interface [polypeptide binding]; other site
216591035408	catalytic residues [active]
216591035409	Bacterial conjugation TrbI-like protein; Region: TrbI; pfam03743
216591035410	HMMPfam hit to PF06447, TraB pilus assembly protein, score 1.7e-38
216591035411	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035412	1 probable transmembrane helix predicted for pBS044 by TMHMM2.0 at aa 23-42
216591035413	TraK protein; Region: TraK; pfam06586
216591035414	conjugal transfer protein TraK; Provisional; Region: PRK13736; cl05878
216591035415	TraE protein; Region: TraE; cl05060
216591035416	1 probable transmembrane helix predicted for pBS046 by TMHMM2.0 at aa 20-42
216591035417	TraL protein; Region: TraL; cl06278
216591035418	1 probable transmembrane helix predicted for pBS047 by TMHMM2.0 at aa 32-54
216591035419	3 probable transmembrane helices predicted for pBS048 by TMHMM2.0 at aa 37-59, 79-98 and 105-127
216591035420	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
216591035421	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
216591035422	N-acetyl-D-glucosamine binding site [chemical binding]; other site
216591035423	catalytic residue [active]
216591035424	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 2.7e-28
216591035425	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035426	Escherichia coli putative lactam utilization protein YbgL and similar proteins; Region: LamB_YcsF_YbgL_like; cd10800
216591035427	putative active site [active]
216591035428	HMMPfam hit to PF03746, LamB/YcsF family, score 3.7e-85
216591035429	Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl15441
216591035430	HMMPfam hit to PF03480, Bacterial extracellular solute-binding prot, score 1.3e-07
216591035431	Autoinducer binding domain; Region: Autoind_bind; pfam03472
216591035432	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cl17315
216591035433	DNA binding residues [nucleotide binding]
216591035434	dimerization interface [polypeptide binding]; other site
216591035435	HMMPfam hit to PF00196, Bacterial regulatory proteins, luxR family, score 0.00015
216591035436	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
216591035437	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
216591035438	metal binding site [ion binding]; metal-binding site
216591035439	active site
216591035440	I-site; other site
216591035441	EAL domain; Region: EAL; pfam00563
216591035442	HMMPfam hit to PF00563, EAL domain, score 2.7e-07
216591035443	HMMPfam hit to PF00990, GGDEF domain, score 1.5e-22
216591035444	2 probable transmembrane helices predicted for pBS055 by TMHMM2.0 at aa 26-45 and 298-317
216591035445	TrwC relaxase; Region: TrwC; pfam08751
216591035446	conjugative relaxase domain, TrwC/TraI family; Region: relax_trwC; TIGR02686
216591035447	AAA domain; Region: AAA_30; pfam13604
216591035448	Family description; Region: UvrD_C_2; pfam13538
216591035449	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035450	Probable gene remnant. Similar to the N-terminal regions of Escherichia coli thiol:disulfide interchange protein precursor DsbD or DipZ or CycZ or CutA2 or b4136 SWALL:DSBD_ECOLI (SWALL:P36655) (565 aa) fasta scores: E(): 9.3e-05, 30.49% id in 141 aa, and to Ralstonia solanacearum thiol:disulfide interchange protein dsbD precursor rsc2990 or rs01128 SWALL:DSBD_RALSO (SWALL:Q8XV41) (608 aa) fasta scores: E(): 1.8e-11, 38.19% id in 144 aa
216591035451	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
216591035452	Type IV secretion-system coupling protein DNA-binding domain; Region: TrwB_AAD_bind; pfam10412
216591035453	Walker A motif; other site
216591035454	ATP binding site [chemical binding]; other site
216591035455	Walker B motif; other site
216591035456	PS00017 ATP/GTP-binding site motif A (P-loop).
216591035457	2 probable transmembrane helices predicted for pBS059 by TMHMM2.0 at aa 31-53 and 115-137
216591035458	PRLI-interacting factor K; Provisional; Region: PLN03086
216591035459	1 probable transmembrane helix predicted for pBS064 by TMHMM2.0 at aa 20-37
216591035460	Protein of unknown function (DUF3717); Region: DUF3717; pfam12512
216591035461	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
216591035462	ParB-like nuclease domain; Region: ParBc; pfam02195
216591035463	HMMPfam hit to PF02195, ParB-like nuclease domain, score 6.9e-13
216591035464	DNA methylase; Region: N6_N4_Mtase; cl17433
216591035465	DNA modification methylase [DNA replication, recombination, and repair]; Region: COG0863
216591035466	HMMPfam hit to PF01555, DNA methylase, score 2.9e-38
216591035467	PS00092 N-6 Adenine-specific DNA methylases signature.
216591035468	Domain of unknown function (DUF932); Region: DUF932; pfam06067
216591035469	HMMPfam hit to PF06067, Domain of unknown function (DUF932), score 2e-187
216591035470	Similar to the N-terminal regions of Pseudomonas aeruginosa hypothetical protein pa2221 SWALL:Q9I1P8 (EMBL:AE004648) (401 aa) fasta scores: E(): 0.0033, 43.75% id in 48 aa, and Ralstonia solanacearum probable transposase protein rsc1842 or rs04281 SWALL:Q8XYB6 (EMBL:AL646067) (130 aa) fasta scores: E(): 0.09, 44% id in 50 aa
216591035471	Similar to internal regions of Pseudomonas aeruginosa hypothetical protein pa2221 SWALL:Q9I1P8 (EMBL:AE004648) (401 aa) fasta scores: E(): 0.00095, 42.37% id in 59 aa, and Ralstonia solanacearum probable transposase protein rsc1843 or rs05589 SWALL:Q8XYB5 (EMBL:AL646067) (491 aa) fasta scores: E(): 0.00022, 41.53% id in 65 aa
216591035472	Transposase; Region: HTH_Tnp_1; pfam01527
216591035473	HMMPfam hit to PF01527, Transposase, score 1.6e-29
216591035474	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
216591035475	HTH-like domain; Region: HTH_21; pfam13276
216591035476	Integrase core domain; Region: rve; pfam00665
216591035477	Integrase core domain; Region: rve_3; pfam13683
216591035478	HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41
216591035479	Similar to an internal region of Rhizobium sp. nodulation protein NolO or y4hD SWALL:NOLO_RHISN (SWALL:P55474) (680 aa) fasta scores: E(): 7.6e-26, 36.58% id in 287 aa, and to the C-teminal region of Methanococcus jannaschii hypothetical protein Mj1058 mj1058 SWALL:YA58_METJA (SWALL:Q58458) (609 aa) fasta scores: E(): 1.9e-25, 36.76% id in 272 aa. CDS is truncated by the insertion of the upstream IS element and subsequent recombination events. Possible gene remnant
216591035480	UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: MurB; COG0812
216591035481	FAD binding domain; Region: FAD_binding_4; pfam01565
216591035482	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
216591035483	HMMPfam hit to PF01565, FAD binding domain, score 0.00047
216591035484	HMMPfam hit to PF02873, UDP-N-acetylenolpyruvoylglucosamine red, score 5.4e-09
216591035485	HMMPfam hit to PF00293, NUDIX domain, score 0.021
216591035486	Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]; Region: SsnA; COG0402
216591035487	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
216591035488	HMMPfam hit to PF01979, Amidohydrolase family, score 0.01
216591035489	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
216591035490	Plasmid pRiA4b ORF-3-like protein; Region: PRiA4_ORF3; pfam07929
216591035491	HMMPfam hit to PF07929, Plasmid pRiA4b ORF-3-like protein, score 1.3e-62
216591035492	Similar to the C-terminal regions of Xanthomonas campestris resolvase TnpR SWALL:Q9RCD3 (EMBL:Y17691) (308 aa) fasta scores: E(): 3.5e-05, 34.25% id in 108 aa, and to Pseudomonas putida putative resolvase Res2 SWALL:Q847J0 (EMBL:AF491307) (157 aa) fasta scores: E(): 0.00024, 35.48% id in 93 aa
216591035493	Phage integrase protein; Region: DUF3701; pfam12482
216591035494	tyrosine recombinase XerC; Region: recomb_XerC; TIGR02224
216591035495	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
216591035496	active site
216591035497	catalytic residues [active]
216591035498	DNA binding site [nucleotide binding]
216591035499	Int/Topo IB signature motif; other site
216591035500	HMMPfam hit to PF00589, Phage integrase family, score 9.9e-13
216591035501	PIN domain of ribonucleases (toxins), VapC and FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus horikoshii protein PH0500, and other similar bacterial and archaeal homologs; Region: PIN_VapC-FitB; cd09881
216591035502	oligomeric interface; other site
216591035503	putative active site [active]
216591035504	homodimer interface [polypeptide binding]; other site
216591035505	HMMPfam hit to PF01850, PIN domain, score 4.2e-27
216591035506	Virulence-associated protein and related proteins [Function unknown]; Region: VagC; COG4456
216591035507	HMMPfam hit to PF04014, SpoVT / AbrB like domain, score 0.00035
216591035508	Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases; Region: Adenylation_DNA_ligase_LigD_LigC; cd07906
216591035509	DNA polymerase LigD, ligase domain; Region: NHEJ_ligase_lig; TIGR02779
216591035510	active site
216591035511	DNA binding site [nucleotide binding]
216591035512	The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit; Region: OBF_DNA_ligase_LigD; cd07971
216591035513	DNA binding site [nucleotide binding]
216591035514	HMMPfam hit to PF04679, ATP dependent DNA ligase C terminal re, score 0.0044
216591035515	HMMPfam hit to PF01068, ATP dependent DNA ligase domain, score 2.2e-22
216591035516	PS00697 ATP-dependent DNA ligase AMP-binding site.