-- dump date 20140619_012417 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 398577000001 SEQ_END SEQ_END NC_010551.1 3443583 3443583 DR NC_010551.1; contig end 3443583..3443583 Burkholderia ambifaria MC40-6 398577000002 SEQ_END SEQ_END NC_010552.1 2769414 2769414 DR NC_010552.1; contig end 2769414..2769414 Burkholderia ambifaria MC40-6 398577000003 SEQ_END SEQ_END NC_010553.1 301592 301592 DR NC_010553.1; contig end 301592..301592 Burkholderia ambifaria MC40-6 398577000004 SEQ_END SEQ_END NC_010557.1 1127947 1127947 DR NC_010557.1; contig end 1127947..1127947 Burkholderia ambifaria MC40-6 YP_001806720.1 CDS dnaA NC_010551.1 302 1879 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 302..1879 Burkholderia ambifaria MC40-6 6178097 YP_001806721.1 CDS BamMC406_0002 NC_010551.1 2048 3154 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2048..3154 Burkholderia ambifaria MC40-6 6176574 YP_001806722.1 CDS gyrB NC_010551.1 3361 5835 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 3361..5835 Burkholderia ambifaria MC40-6 6176988 YP_001806723.1 CDS BamMC406_0005 NC_010551.1 6695 8713 D KEGG: spl:Spea_2307 SMC domain protein; hypothetical protein 6695..8713 Burkholderia ambifaria MC40-6 6176754 YP_001806724.1 CDS BamMC406_0006 NC_010551.1 8737 10242 D PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: ssp:SSP1022 putative DNA segregation ATPase FtsK SpoIIIE family protein; cell division protein FtsK 8737..10242 Burkholderia ambifaria MC40-6 6176451 YP_001806725.1 CDS BamMC406_0007 NC_010551.1 10239 11381 D SMART: AAA ATPase; KEGG: scl:sce7683 hypothetical protein; ATPase AAA 10239..11381 Burkholderia ambifaria MC40-6 6178132 YP_001806726.1 CDS BamMC406_0008 NC_010551.1 11374 12258 D hypothetical protein 11374..12258 Burkholderia ambifaria MC40-6 6176565 YP_001806727.1 CDS BamMC406_0009 NC_010551.1 12361 12747 R TIGRFAM: DNA sulfur modification protein DndE; PFAM: Domain of unknown function DUF1832; KEGG: pfo:Pfl_0741 hypothetical protein; DNA sulfur modification protein DndE complement(12361..12747) Burkholderia ambifaria MC40-6 6177169 YP_001806728.1 CDS BamMC406_0010 NC_010551.1 12744 14726 R TIGRFAM: DNA sulfur modification protein DndD; PFAM: SMC domain protein; KEGG: pfo:Pfl_0740 hypothetical protein; DNA sulfur modification protein DndD complement(12744..14726) Burkholderia ambifaria MC40-6 6176536 YP_001806729.1 CDS BamMC406_0011 NC_010551.1 14731 16185 R TIGRFAM: sulfurtransferase DndC; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pfo:Pfl_0739 hypothetical protein; hypothetical protein complement(14731..16185) Burkholderia ambifaria MC40-6 6176838 YP_001806730.1 CDS BamMC406_0012 NC_010551.1 16182 17309 R KEGG: pfo:Pfl_0738 hypothetical protein; hypothetical protein complement(16182..17309) Burkholderia ambifaria MC40-6 6176874 YP_001806731.1 CDS BamMC406_0013 NC_010551.1 17851 18099 D PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: bxe:Bxe_A4510 hypothetical protein; HSP20-like protein 17851..18099 Burkholderia ambifaria MC40-6 6178193 YP_001806732.1 CDS BamMC406_0014 NC_010551.1 24061 24591 R PFAM: cytochrome B561; KEGG: bam:Bamb_0006 cytochrome b561; cytochrome B561 complement(24061..24591) Burkholderia ambifaria MC40-6 6176701 YP_001806733.1 CDS BamMC406_0015 NC_010551.1 24591 25682 R PFAM: Catalase domain protein; KEGG: bam:Bamb_0007 catalase domain protein; catalase domain-containing protein complement(24591..25682) Burkholderia ambifaria MC40-6 6176098 YP_001806734.1 CDS BamMC406_0016 NC_010551.1 25840 26358 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bam:Bamb_0008 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 25840..26358 Burkholderia ambifaria MC40-6 6176862 YP_001806735.1 CDS BamMC406_0017 NC_010551.1 26355 27116 D KEGG: bam:Bamb_0009 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor 26355..27116 Burkholderia ambifaria MC40-6 6176524 YP_001806736.1 CDS BamMC406_0018 NC_010551.1 27547 27870 R KEGG: bam:Bamb_0010 hypothetical protein; hypothetical protein complement(27547..27870) Burkholderia ambifaria MC40-6 6176468 YP_001806737.1 CDS BamMC406_0019 NC_010551.1 28003 28443 R hypothetical protein complement(28003..28443) Burkholderia ambifaria MC40-6 6176602 YP_001806738.1 CDS BamMC406_0020 NC_010551.1 29322 30203 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigJ complement(29322..30203) Burkholderia ambifaria MC40-6 6176553 YP_001806739.1 CDS BamMC406_0021 NC_010551.1 30203 30679 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_0013 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase complement(30203..30679) Burkholderia ambifaria MC40-6 6176515 YP_001806740.1 CDS BamMC406_0022 NC_010551.1 31254 32480 D PFAM: protein of unknown function DUF323; KEGG: bam:Bamb_0015 protein of unknown function DUF323; hypothetical protein 31254..32480 Burkholderia ambifaria MC40-6 6176583 YP_001806741.1 CDS BamMC406_0023 NC_010551.1 32464 33477 D KEGG: bam:Bamb_0016 hypothetical protein; hypothetical protein 32464..33477 Burkholderia ambifaria MC40-6 6176561 YP_001806742.1 CDS BamMC406_0024 NC_010551.1 33758 34063 D KEGG: bam:Bamb_0017 hypothetical protein; hypothetical protein 33758..34063 Burkholderia ambifaria MC40-6 6177249 YP_001806743.1 CDS BamMC406_0025 NC_010551.1 34163 34315 D KEGG: bur:Bcep18194_A3210 hypothetical protein; hypothetical protein 34163..34315 Burkholderia ambifaria MC40-6 6177302 YP_001806744.1 CDS BamMC406_0026 NC_010551.1 34710 34982 D KEGG: rso:RSc2388 hypothetical protein; hypothetical protein 34710..34982 Burkholderia ambifaria MC40-6 6176718 YP_001806745.1 CDS BamMC406_0027 NC_010551.1 34979 35275 D hypothetical protein 34979..35275 Burkholderia ambifaria MC40-6 6176423 YP_001806746.1 CDS BamMC406_0028 NC_010551.1 35356 38370 R PFAM: type III restriction protein res subunit; KEGG: bam:Bamb_0019 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(35356..38370) Burkholderia ambifaria MC40-6 6176112 YP_001806747.1 CDS BamMC406_0029 NC_010551.1 38370 40376 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bam:Bamb_0020 site-specific DNA-methyltransferase (adenine-specific); adenine-specific DNA-methyltransferase complement(38370..40376) Burkholderia ambifaria MC40-6 6176784 YP_001806748.1 CDS BamMC406_0030 NC_010551.1 40761 41990 R KEGG: bam:Bamb_0021 outer membrane protein (porin)-like protein; outer membrane protein (porin)-like protein complement(40761..41990) Burkholderia ambifaria MC40-6 6178765 YP_001806749.1 CDS BamMC406_0031 NC_010551.1 42173 42850 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_0022 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(42173..42850) Burkholderia ambifaria MC40-6 6177064 YP_001806750.1 CDS BamMC406_0032 NC_010551.1 42863 44230 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: bam:Bamb_0023 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(42863..44230) Burkholderia ambifaria MC40-6 6178110 YP_001806751.1 CDS BamMC406_0033 NC_010551.1 44304 45152 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_0024 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(44304..45152) Burkholderia ambifaria MC40-6 6179088 YP_001806752.1 CDS BamMC406_0034 NC_010551.1 45202 45999 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_0025 ABC transporter related; ABC transporter-like protein complement(45202..45999) Burkholderia ambifaria MC40-6 6176381 YP_001806753.1 CDS BamMC406_0035 NC_010551.1 46121 47125 R PFAM: NMT1/THI5 like domain protein; KEGG: bam:Bamb_0026 ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein; NMT1/THI5-like domain-containing protein complement(46121..47125) Burkholderia ambifaria MC40-6 6177410 YP_001806754.1 CDS BamMC406_0036 NC_010551.1 47269 48051 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: bam:Bamb_0027 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR complement(47269..48051) Burkholderia ambifaria MC40-6 6176113 YP_001806755.1 CDS fliQ NC_010551.1 48080 48352 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(48080..48352) Burkholderia ambifaria MC40-6 6176455 YP_001806756.1 CDS fliP NC_010551.1 48369 49130 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(48369..49130) Burkholderia ambifaria MC40-6 6176176 YP_001806757.1 CDS BamMC406_0039 NC_010551.1 49167 49727 R PFAM: flagellar biosynthesis protein FliO; KEGG: bam:Bamb_0030 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO complement(49167..49727) Burkholderia ambifaria MC40-6 6179108 YP_001806758.1 CDS BamMC406_0040 NC_010551.1 49724 50215 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: bam:Bamb_0031 flagellar motor switch protein FliN; flagellar motor switch protein FliN complement(49724..50215) Burkholderia ambifaria MC40-6 6178764 YP_001806759.1 CDS fliM NC_010551.1 50208 51206 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(50208..51206) Burkholderia ambifaria MC40-6 6176666 YP_001806760.1 CDS fliL NC_010551.1 51229 51765 R interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(51229..51765) Burkholderia ambifaria MC40-6 6177261 YP_001806761.1 CDS BamMC406_0043 NC_010551.1 51937 52659 R PFAM: LrgB family protein; KEGG: bam:Bamb_0034 LrgB family protein; LrgB family protein complement(51937..52659) Burkholderia ambifaria MC40-6 6176981 YP_001806762.1 CDS BamMC406_0044 NC_010551.1 52673 53149 R PFAM: LrgA family protein; KEGG: bam:Bamb_0035 LrgA family protein; LrgA family protein complement(52673..53149) Burkholderia ambifaria MC40-6 6177378 YP_001806763.1 CDS BamMC406_0045 NC_010551.1 53290 54216 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0036 transcriptional regulator, LysR family; LysR family transcriptional regulator 53290..54216 Burkholderia ambifaria MC40-6 6176464 YP_001806764.1 CDS BamMC406_0046 NC_010551.1 54338 55900 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0037 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(54338..55900) Burkholderia ambifaria MC40-6 6176749 YP_001806765.1 CDS BamMC406_0047 NC_010551.1 56076 56564 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_0038 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(56076..56564) Burkholderia ambifaria MC40-6 6178705 YP_001806766.1 CDS BamMC406_0048 NC_010551.1 56738 57022 D KEGG: bam:Bamb_0039 hypothetical protein; hypothetical protein 56738..57022 Burkholderia ambifaria MC40-6 6178004 YP_001806767.1 CDS BamMC406_0049 NC_010551.1 57302 58831 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_0040 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 57302..58831 Burkholderia ambifaria MC40-6 6176079 YP_001806768.1 CDS BamMC406_0050 NC_010551.1 59075 59233 D hypothetical protein 59075..59233 Burkholderia ambifaria MC40-6 6176677 YP_001806769.1 CDS BamMC406_0051 NC_010551.1 59398 60186 R KEGG: bam:Bamb_0041 hypothetical protein; hypothetical protein complement(59398..60186) Burkholderia ambifaria MC40-6 6176523 YP_001806770.1 CDS BamMC406_0052 NC_010551.1 60218 60724 R PFAM: General secretion pathway M protein; KEGG: bam:Bamb_0042 general secretion pathway M protein; general secretion pathway M protein complement(60218..60724) Burkholderia ambifaria MC40-6 6177330 YP_001806771.1 CDS BamMC406_0053 NC_010551.1 60721 62091 R TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: bam:Bamb_0043 general secretion pathway protein L; general secretion pathway protein L complement(60721..62091) Burkholderia ambifaria MC40-6 6177124 YP_001806772.1 CDS BamMC406_0054 NC_010551.1 62116 63237 R PFAM: General secretion pathway protein K; KEGG: bam:Bamb_0044 general secretion pathway protein K; general secretion pathway protein K complement(62116..63237) Burkholderia ambifaria MC40-6 6178884 YP_001806773.1 CDS BamMC406_0055 NC_010551.1 63240 63914 R KEGG: bam:Bamb_0045 putative general secretion pathway protein J; putative general secretion pathway protein J complement(63240..63914) Burkholderia ambifaria MC40-6 6176954 YP_001806774.1 CDS BamMC406_0056 NC_010551.1 63922 64275 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: bam:Bamb_0046 general secretion pathway protein I; general secretion pathway protein I complement(63922..64275) Burkholderia ambifaria MC40-6 6177356 YP_001806775.1 CDS BamMC406_0057 NC_010551.1 64326 64874 R TIGRFAM: general secretion pathway protein H; KEGG: bam:Bamb_0047 general secretion pathway protein H; general secretion pathway protein H complement(64326..64874) Burkholderia ambifaria MC40-6 6178749 YP_001806776.1 CDS BamMC406_0058 NC_010551.1 64918 65370 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: bam:Bamb_0048 general secretion pathway protein G; general secretion pathway protein G complement(64918..65370) Burkholderia ambifaria MC40-6 6178825 YP_001806777.1 CDS BamMC406_0059 NC_010551.1 65548 65958 D KEGG: bam:Bamb_0049 general secretion pathway protein C; general secretion pathway protein C 65548..65958 Burkholderia ambifaria MC40-6 6178834 YP_001806778.1 CDS BamMC406_0060 NC_010551.1 65989 67206 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: bam:Bamb_0050 general secretion pathway protein F; general secretion pathway protein F complement(65989..67206) Burkholderia ambifaria MC40-6 6176585 YP_001806779.1 CDS BamMC406_0061 NC_010551.1 67211 68710 R KEGG: bam:Bamb_0051 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; general secretory pathway protein E complement(67211..68710) Burkholderia ambifaria MC40-6 6176387 YP_001806780.1 CDS BamMC406_0062 NC_010551.1 68707 71022 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: bam:Bamb_0052 general secretion pathway protein D; general secretion pathway protein D complement(68707..71022) Burkholderia ambifaria MC40-6 6176918 YP_001806781.1 CDS BamMC406_0063 NC_010551.1 71413 71862 D PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_0053 lytic transglycosylase, catalytic; lytic transglycosylase 71413..71862 Burkholderia ambifaria MC40-6 6179047 YP_001806782.1 CDS BamMC406_0064 NC_010551.1 72049 73359 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bam:Bamb_0054 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 72049..73359 Burkholderia ambifaria MC40-6 6177442 YP_001806783.1 CDS BamMC406_0065 NC_010551.1 73494 73772 R PFAM: histone family protein DNA-binding protein; KEGG: bmu:Bmul_0066 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(73494..73772) Burkholderia ambifaria MC40-6 6176783 YP_001806784.1 CDS mnmC NC_010551.1 74163 76121 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 74163..76121 Burkholderia ambifaria MC40-6 6177449 YP_001806785.1 CDS BamMC406_0067 NC_010551.1 76797 78011 D PFAM: sodium/hydrogen exchanger; KEGG: bam:Bamb_0058 sodium/hydrogen exchanger; sodium/hydrogen exchanger 76797..78011 Burkholderia ambifaria MC40-6 6178902 YP_001806786.1 CDS BamMC406_0068 NC_010551.1 78026 79141 D ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 78026..79141 Burkholderia ambifaria MC40-6 6176100 YP_001806787.1 CDS BamMC406_0069 NC_010551.1 79647 80285 D PFAM: regulatory protein MarR; regulatory protein ArsR; KEGG: bam:Bamb_0061 transcriptional regulator, MarR family; MarR family transcriptional regulator 79647..80285 Burkholderia ambifaria MC40-6 6176788 YP_001806788.1 CDS BamMC406_0070 NC_010551.1 80314 81024 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 80314..81024 Burkholderia ambifaria MC40-6 6177463 YP_001806789.1 CDS BamMC406_0071 NC_010551.1 81240 82352 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bam:Bamb_0063 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 81240..82352 Burkholderia ambifaria MC40-6 6177267 YP_001806790.1 CDS BamMC406_0072 NC_010551.1 82533 83069 D PFAM: nuclear protein SET; KEGG: bam:Bamb_0064 nuclear protein SET; nuclear protein SET 82533..83069 Burkholderia ambifaria MC40-6 6178891 YP_001806791.1 CDS BamMC406_0073 NC_010551.1 83160 84644 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: bam:Bamb_0065 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(83160..84644) Burkholderia ambifaria MC40-6 6178805 YP_001806792.1 CDS BamMC406_0074 NC_010551.1 84761 85453 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_0075 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(84761..85453) Burkholderia ambifaria MC40-6 6178768 YP_001806793.1 CDS BamMC406_0075 NC_010551.1 85576 85806 D KEGG: bmu:Bmul_0076 hypothetical protein; hypothetical protein 85576..85806 Burkholderia ambifaria MC40-6 6177300 YP_001806794.1 CDS phhB NC_010551.1 85905 86213 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(85905..86213) Burkholderia ambifaria MC40-6 6177289 YP_001806795.1 CDS phhA NC_010551.1 86374 87300 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(86374..87300) Burkholderia ambifaria MC40-6 6176982 YP_001806796.1 CDS BamMC406_0078 NC_010551.1 87407 87892 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bmu:Bmul_0079 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 87407..87892 Burkholderia ambifaria MC40-6 6178798 YP_001806797.1 CDS BamMC406_0079 NC_010551.1 87947 88480 R PFAM: adenylate cyclase; KEGG: bam:Bamb_0071 adenylate cyclase; adenylate cyclase complement(87947..88480) Burkholderia ambifaria MC40-6 6177335 YP_001806798.1 CDS BamMC406_0080 NC_010551.1 88614 89417 R hypothetical protein complement(88614..89417) Burkholderia ambifaria MC40-6 6176917 YP_001806799.1 CDS BamMC406_0081 NC_010551.1 89417 90226 R hypothetical protein complement(89417..90226) Burkholderia ambifaria MC40-6 6176505 YP_001806800.1 CDS BamMC406_0082 NC_010551.1 90228 91229 R hypothetical protein complement(90228..91229) Burkholderia ambifaria MC40-6 6178876 YP_001806801.1 CDS BamMC406_0083 NC_010551.1 91381 92280 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0072 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(91381..92280) Burkholderia ambifaria MC40-6 6178866 YP_001806802.1 CDS BamMC406_0084 NC_010551.1 92455 94140 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bam:Bamb_0073 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 92455..94140 Burkholderia ambifaria MC40-6 6175956 YP_001806803.1 CDS BamMC406_0085 NC_010551.1 94563 95342 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_0074 ABC transporter related; ABC transporter-like protein 94563..95342 Burkholderia ambifaria MC40-6 6178919 YP_001806804.1 CDS BamMC406_0086 NC_010551.1 95339 96094 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_0075 ABC transporter related; ABC transporter-like protein 95339..96094 Burkholderia ambifaria MC40-6 6179115 YP_001806805.1 CDS BamMC406_0087 NC_010551.1 96172 97371 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_0076 extracellular ligand-binding receptor; extracellular ligand-binding receptor 96172..97371 Burkholderia ambifaria MC40-6 6176514 YP_001806806.1 CDS BamMC406_0088 NC_010551.1 97491 98375 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_0077 inner-membrane translocator; inner-membrane translocator 97491..98375 Burkholderia ambifaria MC40-6 6177075 YP_001806807.1 CDS BamMC406_0089 NC_010551.1 98375 99349 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_0078 inner-membrane translocator; inner-membrane translocator 98375..99349 Burkholderia ambifaria MC40-6 6177131 YP_001806808.1 CDS BamMC406_0090 NC_010551.1 100453 101610 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_0080 extracellular ligand-binding receptor; extracellular ligand-binding receptor 100453..101610 Burkholderia ambifaria MC40-6 6176967 YP_001806809.1 CDS BamMC406_0091 NC_010551.1 101812 102867 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_0081 inner-membrane translocator; inner-membrane translocator 101812..102867 Burkholderia ambifaria MC40-6 6177752 YP_001806810.1 CDS BamMC406_0092 NC_010551.1 102872 104656 D PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_0082 ABC transporter related; ABC transporter-like protein 102872..104656 Burkholderia ambifaria MC40-6 6178869 YP_001806811.1 CDS BamMC406_0093 NC_010551.1 104656 105414 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_0083 ABC transporter related; ABC transporter-like protein 104656..105414 Burkholderia ambifaria MC40-6 6177375 YP_001806812.1 CDS BamMC406_0094 NC_010551.1 105896 107866 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 105896..107866 Burkholderia ambifaria MC40-6 6178851 YP_001806813.1 CDS gidB NC_010551.1 107863 108549 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 107863..108549 Burkholderia ambifaria MC40-6 6176952 YP_001806814.1 CDS BamMC406_0096 NC_010551.1 108601 109380 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bam:Bamb_0086 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 108601..109380 Burkholderia ambifaria MC40-6 6178831 YP_001806815.1 CDS BamMC406_0097 NC_010551.1 109412 110305 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: bam:Bamb_0087 ParB-like partition proteins; parB-like partition protein 109412..110305 Burkholderia ambifaria MC40-6 6176728 YP_001806816.1 CDS BamMC406_0098 NC_010551.1 110316 111449 D PFAM: Citrate transporter; KEGG: bam:Bamb_0088 citrate transporter; citrate transporter 110316..111449 Burkholderia ambifaria MC40-6 6176560 YP_001806817.1 CDS BamMC406_0099 NC_010551.1 112020 112547 D KEGG: bam:Bamb_0090 F0F1-type ATP synthase subunit I-like protein; F0F1-type ATP synthase subunit I-like protein 112020..112547 Burkholderia ambifaria MC40-6 6176418 YP_001806818.1 CDS BamMC406_0100 NC_010551.1 112658 113506 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 112658..113506 Burkholderia ambifaria MC40-6 6177144 YP_001806819.1 CDS BamMC406_0101 NC_010551.1 113582 113851 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 113582..113851 Burkholderia ambifaria MC40-6 6178913 YP_001806820.1 CDS BamMC406_0102 NC_010551.1 113980 114450 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 113980..114450 Burkholderia ambifaria MC40-6 6176555 YP_001806821.1 CDS BamMC406_0103 NC_010551.1 114453 114992 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 114453..114992 Burkholderia ambifaria MC40-6 6177421 YP_001806822.1 CDS BamMC406_0104 NC_010551.1 115037 116578 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 115037..116578 Burkholderia ambifaria MC40-6 6178874 YP_001806823.1 CDS BamMC406_0105 NC_010551.1 116648 117523 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 116648..117523 Burkholderia ambifaria MC40-6 6176053 YP_001806824.1 CDS BamMC406_0106 NC_010551.1 117590 118984 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 117590..118984 Burkholderia ambifaria MC40-6 6177348 YP_001806825.1 CDS atpC NC_010551.1 119137 119562 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 119137..119562 Burkholderia ambifaria MC40-6 6176859 YP_001806826.1 CDS BamMC406_0108 NC_010551.1 119815 121542 D PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_0099 acyl-CoA synthetase; AMP-binding domain-containing protein 119815..121542 Burkholderia ambifaria MC40-6 6178648 YP_001806827.1 CDS BamMC406_0109 NC_010551.1 122244 123056 R PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_0100 prephenate dehydratase; arogenate dehydratase complement(122244..123056) Burkholderia ambifaria MC40-6 6176891 YP_001806828.1 CDS hemE NC_010551.1 123173 124300 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 123173..124300 Burkholderia ambifaria MC40-6 6177213 YP_001806829.1 CDS BamMC406_0111 NC_010551.1 124749 127010 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 124749..127010 Burkholderia ambifaria MC40-6 6177135 YP_001806830.1 CDS putA NC_010551.1 127376 131308 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 127376..131308 Burkholderia ambifaria MC40-6 6176861 YP_001806831.1 CDS BamMC406_0113 NC_010551.1 131393 132532 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_0104 extracellular ligand-binding receptor; extracellular ligand-binding receptor 131393..132532 Burkholderia ambifaria MC40-6 6177399 YP_001806832.1 CDS BamMC406_0114 NC_010551.1 132819 133112 R KEGG: ypi:YpsIP31758_4010 hypothetical protein; hypothetical protein complement(132819..133112) Burkholderia ambifaria MC40-6 6177083 YP_001806833.1 CDS BamMC406_0115 NC_010551.1 133109 133942 R KEGG: ypi:YpsIP31758_4012 hypothetical protein; hypothetical protein complement(133109..133942) Burkholderia ambifaria MC40-6 6178688 YP_001806834.1 CDS BamMC406_0116 NC_010551.1 134320 135828 R PFAM: AMP-dependent synthetase and ligase; KEGG: bch:Bcen2424_0116 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(134320..135828) Burkholderia ambifaria MC40-6 6176774 YP_001806835.1 CDS BamMC406_0117 NC_010551.1 135879 137531 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_0107 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(135879..137531) Burkholderia ambifaria MC40-6 6177232 YP_001806836.1 CDS BamMC406_0118 NC_010551.1 137651 138319 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_0108 transcriptional regulator, TetR family; TetR family transcriptional regulator 137651..138319 Burkholderia ambifaria MC40-6 6176575 YP_001806837.1 CDS BamMC406_0119 NC_010551.1 138546 139700 D catalyzes the transfer of an amino moiety; putative aminotransferase 138546..139700 Burkholderia ambifaria MC40-6 6178594 YP_001806838.1 CDS BamMC406_0120 NC_010551.1 139817 140605 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_0110 extracellular solute-binding protein, family 3; extracellular solute-binding protein 139817..140605 Burkholderia ambifaria MC40-6 6178748 YP_001806839.1 CDS BamMC406_0121 NC_010551.1 140619 142049 D PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_0111 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 140619..142049 Burkholderia ambifaria MC40-6 6177069 YP_001806840.1 CDS BamMC406_0122 NC_010551.1 142076 142648 R PFAM: transcriptional regulator PadR family protein; KEGG: bam:Bamb_0112 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator complement(142076..142648) Burkholderia ambifaria MC40-6 6176745 YP_001806841.1 CDS BamMC406_0123 NC_010551.1 142718 143149 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bam:Bamb_0113 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(142718..143149) Burkholderia ambifaria MC40-6 6176868 YP_001806842.1 CDS BamMC406_0124 NC_010551.1 143231 145801 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bur:Bcep18194_A3304 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; heavy metal translocating P-type ATPase 143231..145801 Burkholderia ambifaria MC40-6 6176537 YP_001806843.1 CDS BamMC406_0125 NC_010551.1 145812 146177 D KEGG: bam:Bamb_0115 hypothetical protein; hypothetical protein 145812..146177 Burkholderia ambifaria MC40-6 6177062 YP_001806844.1 CDS BamMC406_0126 NC_010551.1 146194 146673 R PFAM: transcription activator effector binding; KEGG: bam:Bamb_0116 transcription activator, effector binding; transcription activator effector binding complement(146194..146673) Burkholderia ambifaria MC40-6 6177782 YP_001806845.1 CDS BamMC406_0127 NC_010551.1 147099 148562 D PFAM: Conserved TM helix repeat-containing protein; KEGG: bam:Bamb_0117 conserved TM helix repeat-containing protein; TM helix repeat-containing protein 147099..148562 Burkholderia ambifaria MC40-6 6176869 YP_001806846.1 CDS BamMC406_0128 NC_010551.1 149355 150767 D TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: bam:Bamb_0118 ethanolamine transproter; ethanolamine transporter 149355..150767 Burkholderia ambifaria MC40-6 6176462 YP_001806847.1 CDS BamMC406_0129 NC_010551.1 150879 152276 D PFAM: Ethanolamine ammonia lyase large subunit; KEGG: bam:Bamb_0119 ethanolamine ammonia lyase large subunit; ethanolamine ammonia lyase large subunit 150879..152276 Burkholderia ambifaria MC40-6 6177265 YP_001806848.1 CDS BamMC406_0130 NC_010551.1 152273 153082 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 152273..153082 Burkholderia ambifaria MC40-6 6176872 YP_001806849.1 CDS BamMC406_0131 NC_010551.1 153113 154003 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0121 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(153113..154003) Burkholderia ambifaria MC40-6 6176532 YP_001806850.1 CDS BamMC406_0132 NC_010551.1 154152 155759 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0122 major facilitator superfamily MFS_1; major facilitator transporter 154152..155759 Burkholderia ambifaria MC40-6 6176803 YP_001806851.1 CDS BamMC406_0133 NC_010551.1 155863 156291 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bam:Bamb_0123 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(155863..156291) Burkholderia ambifaria MC40-6 6176186 YP_001806852.1 CDS BamMC406_0134 NC_010551.1 156609 158135 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_0124 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 156609..158135 Burkholderia ambifaria MC40-6 6175994 YP_001806853.1 CDS BamMC406_0135 NC_010551.1 158424 158966 D KEGG: bam:Bamb_0125 hypothetical protein; hypothetical protein 158424..158966 Burkholderia ambifaria MC40-6 6178147 YP_001806854.1 CDS BamMC406_0136 NC_010551.1 159152 160186 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_0126 transcriptional regulator, AraC family; AraC family transcriptional regulator 159152..160186 Burkholderia ambifaria MC40-6 6176062 YP_001806855.1 CDS BamMC406_0137 NC_010551.1 160247 161350 R KEGG: bam:Bamb_0127 hypothetical protein; hypothetical protein complement(160247..161350) Burkholderia ambifaria MC40-6 6178072 YP_001806856.1 CDS BamMC406_0138 NC_010551.1 161347 163050 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bam:Bamb_0128 acetolactate synthase 2 catalytic subunit; thiamine pyrophosphate protein complement(161347..163050) Burkholderia ambifaria MC40-6 6176342 YP_001806857.1 CDS BamMC406_0139 NC_010551.1 163302 163763 D KEGG: bch:Bcen2424_0139 hypothetical protein; hypothetical protein 163302..163763 Burkholderia ambifaria MC40-6 6177832 YP_001806858.1 CDS BamMC406_0140 NC_010551.1 163760 164044 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: bch:Bcen2424_0140 addiction module toxin, RelE/StbE family; addiction module antitoxin 163760..164044 Burkholderia ambifaria MC40-6 6176220 YP_001806859.1 CDS BamMC406_0141 NC_010551.1 164088 165476 R KEGG: bam:Bamb_0129 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(164088..165476) Burkholderia ambifaria MC40-6 6177329 YP_001806860.1 CDS BamMC406_0142 NC_010551.1 165507 166643 R KEGG: bam:Bamb_0130 hypothetical protein; hypothetical protein complement(165507..166643) Burkholderia ambifaria MC40-6 6178017 YP_001806861.1 CDS BamMC406_0143 NC_010551.1 166796 169723 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(166796..169723) Burkholderia ambifaria MC40-6 6177444 YP_001806862.1 CDS BamMC406_0144 NC_010551.1 169783 170163 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(169783..170163) Burkholderia ambifaria MC40-6 6179048 YP_001806863.1 CDS gcvT NC_010551.1 170278 171396 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(170278..171396) Burkholderia ambifaria MC40-6 6179059 YP_001806864.1 CDS BamMC406_0146 NC_010551.1 171864 172232 R KEGG: bam:Bamb_0134 hypothetical protein; hypothetical protein complement(171864..172232) Burkholderia ambifaria MC40-6 6179030 YP_001806865.1 CDS BamMC406_0147 NC_010551.1 172459 173484 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bam:Bamb_0135 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(172459..173484) Burkholderia ambifaria MC40-6 6177173 YP_001806866.1 CDS BamMC406_0148 NC_010551.1 173738 174460 R KEGG: bam:Bamb_0136 hypothetical protein; hypothetical protein complement(173738..174460) Burkholderia ambifaria MC40-6 6179097 YP_001806867.1 CDS BamMC406_0149 NC_010551.1 174742 176829 D PFAM: UvrD/REP helicase; KEGG: bam:Bamb_0137 UvrD/REP helicase; UvrD/REP helicase 174742..176829 Burkholderia ambifaria MC40-6 6176096 YP_001806868.1 CDS BamMC406_0150 NC_010551.1 176918 177826 R PFAM: cytochrome c class I; KEGG: bam:Bamb_0138 cytochrome c, class I; cytochrome c class I complement(176918..177826) Burkholderia ambifaria MC40-6 6176046 YP_001806869.1 CDS BamMC406_0152 NC_010551.1 178749 180200 R PFAM: AAA-4 family protein; KEGG: psp:PSPPH_0105 carbon storage regulator related protein; putative transcriptional regulator complement(178749..180200) Burkholderia ambifaria MC40-6 6177436 YP_001806870.1 CDS BamMC406_0153 NC_010551.1 180404 181279 R hypothetical protein complement(180404..181279) Burkholderia ambifaria MC40-6 6177467 YP_001806871.1 CDS BamMC406_0154 NC_010551.1 181768 183357 D KEGG: bam:Bamb_0141 hypothetical protein; hypothetical protein 181768..183357 Burkholderia ambifaria MC40-6 6179103 YP_001806872.1 CDS BamMC406_0155 NC_010551.1 183385 186171 R KEGG: bam:Bamb_0142 hypothetical protein; hypothetical protein complement(183385..186171) Burkholderia ambifaria MC40-6 6176807 YP_001806873.1 CDS BamMC406_0156 NC_010551.1 186168 187376 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(186168..187376) Burkholderia ambifaria MC40-6 6178945 YP_001806874.1 CDS BamMC406_0157 NC_010551.1 187437 188087 R KEGG: bam:Bamb_0144 SAM-binding motif containing protein; SAM-binding motif-containing protein complement(187437..188087) Burkholderia ambifaria MC40-6 6178079 YP_001806875.1 CDS BamMC406_0158 NC_010551.1 188096 188803 R PFAM: WbqC-like family protein; KEGG: bam:Bamb_0145 hypothetical protein; WbqC-like family protein complement(188096..188803) Burkholderia ambifaria MC40-6 6176209 YP_001806876.1 CDS BamMC406_0159 NC_010551.1 188809 190194 R PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_0146 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(188809..190194) Burkholderia ambifaria MC40-6 6177439 YP_001806877.1 CDS BamMC406_0160 NC_010551.1 190191 190976 R KEGG: bam:Bamb_0147 hypothetical protein; hypothetical protein complement(190191..190976) Burkholderia ambifaria MC40-6 6176652 YP_001806878.1 CDS BamMC406_0161 NC_010551.1 191381 193177 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_0148 TPR repeat-containing protein; hypothetical protein 191381..193177 Burkholderia ambifaria MC40-6 6176298 YP_001806879.1 CDS BamMC406_0162 NC_010551.1 193174 194115 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bam:Bamb_0149 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 193174..194115 Burkholderia ambifaria MC40-6 6176296 YP_001806880.1 CDS BamMC406_0163 NC_010551.1 194112 195317 D KEGG: bam:Bamb_0150 putative methyltransferase; putative methyltransferase 194112..195317 Burkholderia ambifaria MC40-6 6177280 YP_001806881.1 CDS BamMC406_0164 NC_010551.1 195330 197831 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_0151 TPR repeat-containing protein; hypothetical protein 195330..197831 Burkholderia ambifaria MC40-6 6177861 YP_001806882.1 CDS BamMC406_0165 NC_010551.1 197828 200314 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_0152 tetratricopeptide TPR_2 repeat protein; hypothetical protein 197828..200314 Burkholderia ambifaria MC40-6 6176172 YP_001806883.1 CDS BamMC406_0166 NC_010551.1 200311 202575 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_0153 tetratricopeptide TPR_2 repeat protein; hypothetical protein 200311..202575 Burkholderia ambifaria MC40-6 6176653 YP_001806884.1 CDS BamMC406_0167 NC_010551.1 202724 203020 R KEGG: bam:Bamb_0154 hypothetical protein; hypothetical protein complement(202724..203020) Burkholderia ambifaria MC40-6 6177460 YP_001806885.1 CDS BamMC406_0168 NC_010551.1 203056 204477 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: bam:Bamb_0155 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein complement(203056..204477) Burkholderia ambifaria MC40-6 6177983 YP_001806886.1 CDS BamMC406_0169 NC_010551.1 204665 205489 R structural flagella protein; flagellin complement(204665..205489) Burkholderia ambifaria MC40-6 6175971 YP_001806887.1 CDS rpsU NC_010551.1 206031 206243 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 206031..206243 Burkholderia ambifaria MC40-6 6178212 YP_001806888.1 CDS BamMC406_0171 NC_010551.1 206614 207219 R PFAM: methyladenine glycosylase; KEGG: bam:Bamb_0158 DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase I complement(206614..207219) Burkholderia ambifaria MC40-6 6177246 YP_001806889.1 CDS BamMC406_0172 NC_010551.1 207361 208242 D PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: bam:Bamb_0159 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 207361..208242 Burkholderia ambifaria MC40-6 6177204 YP_001806890.1 CDS BamMC406_0173 NC_010551.1 208497 209330 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: bam:Bamb_0160 Cof-like hydrolase; cof family hydrolase 208497..209330 Burkholderia ambifaria MC40-6 6177219 YP_001806891.1 CDS BamMC406_0174 NC_010551.1 209436 210176 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(209436..210176) Burkholderia ambifaria MC40-6 6179072 YP_001806892.1 CDS BamMC406_0175 NC_010551.1 210475 210771 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bam:Bamb_0162 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 210475..210771 Burkholderia ambifaria MC40-6 6178154 YP_001806893.1 CDS BamMC406_0176 NC_010551.1 210875 211939 R PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_0163 glycosyl transferase, group 1; group 1 glycosyl transferase complement(210875..211939) Burkholderia ambifaria MC40-6 6178140 YP_001806894.1 CDS BamMC406_0177 NC_010551.1 212606 212926 D with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 212606..212926 Burkholderia ambifaria MC40-6 6176219 YP_001806895.1 CDS BamMC406_0178 NC_010551.1 213021 213575 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 213021..213575 Burkholderia ambifaria MC40-6 6177771 YP_001806896.1 CDS BamMC406_0179 NC_010551.1 213755 214615 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 213755..214615 Burkholderia ambifaria MC40-6 6178680 YP_001806897.1 CDS motB NC_010551.1 214629 215648 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 214629..215648 Burkholderia ambifaria MC40-6 6176274 YP_001806898.1 CDS BamMC406_0181 NC_010551.1 215828 216205 D PFAM: response regulator receiver; KEGG: bam:Bamb_0168 response regulator receiver protein; response regulator receiver protein 215828..216205 Burkholderia ambifaria MC40-6 6178216 YP_001806899.1 CDS BamMC406_0182 NC_010551.1 216239 218470 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheY binding; KEGG: bam:Bamb_0169 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 216239..218470 Burkholderia ambifaria MC40-6 6177243 YP_001806900.1 CDS BamMC406_0183 NC_010551.1 218519 219034 D PFAM: CheW domain protein; KEGG: bam:Bamb_0170 CheW protein; CheW protein 218519..219034 Burkholderia ambifaria MC40-6 6177894 YP_001806901.1 CDS BamMC406_0184 NC_010551.1 219072 221018 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_0171 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 219072..221018 Burkholderia ambifaria MC40-6 6177843 YP_001806902.1 CDS BamMC406_0185 NC_010551.1 221022 221999 D PFAM: MCP methyltransferase CheR-type; KEGG: bam:Bamb_0172 MCP methyltransferase, CheR-type; chemotaxis protein CheR 221022..221999 Burkholderia ambifaria MC40-6 6177632 YP_001806903.1 CDS BamMC406_0186 NC_010551.1 221996 222757 D stimulates methylation of MCP proteins; catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 221996..222757 Burkholderia ambifaria MC40-6 6178333 YP_001806904.1 CDS BamMC406_0187 NC_010551.1 222754 223845 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 222754..223845 Burkholderia ambifaria MC40-6 6176128 YP_001806905.1 CDS BamMC406_0188 NC_010551.1 223913 224308 D PFAM: response regulator receiver; KEGG: bam:Bamb_0175 response regulator receiver protein; response regulator receiver protein 223913..224308 Burkholderia ambifaria MC40-6 6177959 YP_001806906.1 CDS BamMC406_0189 NC_010551.1 224310 225041 D cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 224310..225041 Burkholderia ambifaria MC40-6 6179052 YP_001806907.1 CDS BamMC406_0190 NC_010551.1 225375 225830 D KEGG: bam:Bamb_0177 hypothetical protein; hypothetical protein 225375..225830 Burkholderia ambifaria MC40-6 6177835 YP_001806908.1 CDS BamMC406_0191 NC_010551.1 225847 227073 D KEGG: bam:Bamb_0178 hypothetical protein; hypothetical protein 225847..227073 Burkholderia ambifaria MC40-6 6176180 YP_001806909.1 CDS BamMC406_0192 NC_010551.1 227235 227732 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bam:Bamb_0179 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 227235..227732 Burkholderia ambifaria MC40-6 6176222 YP_001806910.1 CDS BamMC406_0193 NC_010551.1 228093 228473 D PFAM: protein of unknown function DUF805; KEGG: bam:Bamb_0180 protein of unknown function DUF805; hypothetical protein 228093..228473 Burkholderia ambifaria MC40-6 6177642 YP_001806911.1 CDS flhB NC_010551.1 228749 229948 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 228749..229948 Burkholderia ambifaria MC40-6 6176173 YP_001806912.1 CDS flhA NC_010551.1 229945 232047 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 229945..232047 Burkholderia ambifaria MC40-6 6176303 YP_001806913.1 CDS flhF NC_010551.1 232044 233810 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 232044..233810 Burkholderia ambifaria MC40-6 6176322 YP_001806914.1 CDS BamMC406_0197 NC_010551.1 233803 234621 D KEGG: bam:Bamb_0184 flagellar biosynthesisprotein, FlhG; flagellar biosynthesis protein FlhG 233803..234621 Burkholderia ambifaria MC40-6 6177569 YP_001806915.1 CDS fliA NC_010551.1 234636 235370 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 234636..235370 Burkholderia ambifaria MC40-6 6178583 YP_001806916.1 CDS BamMC406_0199 NC_010551.1 235722 237140 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 235722..237140 Burkholderia ambifaria MC40-6 6177687 YP_001806917.1 CDS BamMC406_0200 NC_010551.1 237296 237649 D PFAM: membrane protein of unknown function; KEGG: bam:Bamb_0187 membrane protein of unknown function; hypothetical protein 237296..237649 Burkholderia ambifaria MC40-6 6177549 YP_001806918.1 CDS BamMC406_0201 NC_010551.1 237674 238504 D KEGG: bam:Bamb_0188 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 237674..238504 Burkholderia ambifaria MC40-6 6176503 YP_001806919.1 CDS BamMC406_0202 NC_010551.1 238613 240091 R PFAM: Amidase; KEGG: bam:Bamb_0189 amidase; amidase complement(238613..240091) Burkholderia ambifaria MC40-6 6176366 YP_001806920.1 CDS BamMC406_0203 NC_010551.1 240172 240864 R PFAM: dienelactone hydrolase; KEGG: bam:Bamb_0190 carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(240172..240864) Burkholderia ambifaria MC40-6 6177918 YP_001806921.1 CDS BamMC406_0204 NC_010551.1 241138 242217 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: bam:Bamb_0191 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 241138..242217 Burkholderia ambifaria MC40-6 6177626 YP_001806922.1 CDS BamMC406_0205 NC_010551.1 242670 243812 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_0192 extracellular ligand-binding receptor; extracellular ligand-binding receptor 242670..243812 Burkholderia ambifaria MC40-6 6176733 YP_001806923.1 CDS BamMC406_0206 NC_010551.1 243925 245139 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0193 major facilitator superfamily MFS_1; major facilitator transporter complement(243925..245139) Burkholderia ambifaria MC40-6 6176263 YP_001806924.1 CDS BamMC406_0207 NC_010551.1 245210 245344 R hypothetical protein complement(245210..245344) Burkholderia ambifaria MC40-6 6176188 YP_001806925.1 CDS BamMC406_0208 NC_010551.1 245434 246093 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bam:Bamb_0194 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 245434..246093 Burkholderia ambifaria MC40-6 6177601 YP_001806926.1 CDS BamMC406_0209 NC_010551.1 246449 246742 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bam:Bamb_0195 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 246449..246742 Burkholderia ambifaria MC40-6 6176348 YP_001806927.1 CDS BamMC406_0210 NC_010551.1 246924 248138 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bam:Bamb_0196 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 246924..248138 Burkholderia ambifaria MC40-6 6178649 YP_001806928.1 CDS BamMC406_0211 NC_010551.1 248166 248624 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bmu:Bmul_0192 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(248166..248624) Burkholderia ambifaria MC40-6 6178066 YP_001806929.1 CDS BamMC406_0212 NC_010551.1 248716 249375 R KEGG: bam:Bamb_0198 hypothetical protein; hypothetical protein complement(248716..249375) Burkholderia ambifaria MC40-6 6176181 YP_001806930.1 CDS BamMC406_0213 NC_010551.1 249372 250016 R PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_0199 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(249372..250016) Burkholderia ambifaria MC40-6 6176369 YP_001806931.1 CDS BamMC406_0214 NC_010551.1 250675 251286 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: bam:Bamb_0200 rare lipoprotein A; rare lipoprotein A 250675..251286 Burkholderia ambifaria MC40-6 6178453 YP_001806932.1 CDS BamMC406_0215 NC_010551.1 251381 252271 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bam:Bamb_0201 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase complement(251381..252271) Burkholderia ambifaria MC40-6 6176681 YP_001806933.1 CDS BamMC406_0216 NC_010551.1 252318 252746 D PFAM: protein of unknown function UPF0102; KEGG: bam:Bamb_0202 protein of unknown function UPF0102; hypothetical protein 252318..252746 Burkholderia ambifaria MC40-6 6176272 YP_001806934.1 CDS BamMC406_0217 NC_010551.1 252873 253457 D KEGG: bam:Bamb_0203 phosphoheptose isomerase; phosphoheptose isomerase 252873..253457 Burkholderia ambifaria MC40-6 6176377 YP_001806935.1 CDS BamMC406_0218 NC_010551.1 253475 254272 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bam:Bamb_0204 transport-associated; transport-associated 253475..254272 Burkholderia ambifaria MC40-6 6178325 YP_001806936.1 CDS BamMC406_0219 NC_010551.1 254269 254628 D PFAM: cytochrome c class I; KEGG: bam:Bamb_0205 cytochrome c, class I; cytochrome c class I 254269..254628 Burkholderia ambifaria MC40-6 6176307 YP_001806937.1 CDS BamMC406_0220 NC_010551.1 254875 255534 R PFAM: protein of unknown function DUF1470; KEGG: bam:Bamb_0212 protein of unknown function DUF1470; hypothetical protein complement(254875..255534) Burkholderia ambifaria MC40-6 6176689 YP_001806938.1 CDS BamMC406_0221 NC_010551.1 255635 256627 D PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: bam:Bamb_0213 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 255635..256627 Burkholderia ambifaria MC40-6 6177528 YP_001806939.1 CDS BamMC406_0222 NC_010551.1 256954 257685 D KEGG: bam:Bamb_0214 hypothetical protein; hypothetical protein 256954..257685 Burkholderia ambifaria MC40-6 6179096 YP_001806940.1 CDS BamMC406_0223 NC_010551.1 257675 258112 D KEGG: bam:Bamb_0215 hypothetical protein; hypothetical protein 257675..258112 Burkholderia ambifaria MC40-6 6177914 YP_001806941.1 CDS BamMC406_0224 NC_010551.1 258231 259628 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_0216 glucarate dehydratase; glucarate dehydratase complement(258231..259628) Burkholderia ambifaria MC40-6 6177979 YP_001806942.1 CDS BamMC406_0225 NC_010551.1 259696 261036 R TIGRFAM: d-galactonate transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_0217 D-galactonate transporter; d-galactonate transporter complement(259696..261036) Burkholderia ambifaria MC40-6 6177945 YP_001806943.1 CDS BamMC406_0226 NC_010551.1 261337 261963 D KEGG: bam:Bamb_0218 hypothetical protein; hypothetical protein 261337..261963 Burkholderia ambifaria MC40-6 6176313 YP_001806944.1 CDS BamMC406_0227 NC_010551.1 261979 263316 D PFAM: Carotenoid oxygenase; KEGG: bam:Bamb_0219 carotenoid oxygenase; carotenoid oxygenase 261979..263316 Burkholderia ambifaria MC40-6 6177867 YP_001806945.1 CDS BamMC406_0228 NC_010551.1 263330 264496 R PFAM: protein of unknown function DUF214; KEGG: bam:Bamb_0220 protein of unknown function DUF214; hypothetical protein complement(263330..264496) Burkholderia ambifaria MC40-6 6177876 YP_001806946.1 CDS BamMC406_0229 NC_010551.1 264505 265659 R PFAM: protein of unknown function DUF214; KEGG: bam:Bamb_0221 protein of unknown function DUF214; hypothetical protein complement(264505..265659) Burkholderia ambifaria MC40-6 6176278 YP_001806947.1 CDS BamMC406_0230 NC_010551.1 265678 266376 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_0222 ABC transporter related; ABC transporter-like protein complement(265678..266376) Burkholderia ambifaria MC40-6 6179024 YP_001806948.1 CDS BamMC406_0231 NC_010551.1 266387 267592 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_0223 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(266387..267592) Burkholderia ambifaria MC40-6 6176212 YP_001806949.1 CDS BamMC406_0232 NC_010551.1 267969 268211 D KEGG: bam:Bamb_0224 hypothetical protein; hypothetical protein 267969..268211 Burkholderia ambifaria MC40-6 6177606 YP_001806950.1 CDS BamMC406_0233 NC_010551.1 268287 269054 R PFAM: protein of unknown function DUF82; KEGG: bam:Bamb_0225 protein of unknown function DUF82; hypothetical protein complement(268287..269054) Burkholderia ambifaria MC40-6 6177897 YP_001806951.1 CDS BamMC406_0234 NC_010551.1 269152 270021 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bam:Bamb_0226 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 269152..270021 Burkholderia ambifaria MC40-6 6177919 YP_001806952.1 CDS BamMC406_0235 NC_010551.1 270093 270728 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_0227 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 270093..270728 Burkholderia ambifaria MC40-6 6177960 YP_001806953.1 CDS BamMC406_0236 NC_010551.1 270801 272072 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0228 major facilitator superfamily MFS_1; major facilitator transporter complement(270801..272072) Burkholderia ambifaria MC40-6 6176191 YP_001806954.1 CDS BamMC406_0237 NC_010551.1 272170 273090 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0229 transcriptional regulator, LysR family; LysR family transcriptional regulator 272170..273090 Burkholderia ambifaria MC40-6 6176207 YP_001806955.1 CDS BamMC406_0238 NC_010551.1 273296 274129 R PFAM: OmpW family protein; KEGG: bam:Bamb_0230 OmpW family protein; OmpW family protein complement(273296..274129) Burkholderia ambifaria MC40-6 6177717 YP_001806956.1 CDS BamMC406_0239 NC_010551.1 274146 275387 R KEGG: bam:Bamb_0231 hypothetical protein; hypothetical protein complement(274146..275387) Burkholderia ambifaria MC40-6 6177476 YP_001806957.1 CDS BamMC406_0240 NC_010551.1 275543 276976 R KEGG: bam:Bamb_0232 hypothetical protein; hypothetical protein complement(275543..276976) Burkholderia ambifaria MC40-6 6176330 YP_001806958.1 CDS BamMC406_0241 NC_010551.1 277406 278356 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(277406..278356) Burkholderia ambifaria MC40-6 6178125 YP_001806959.1 CDS BamMC406_0242 NC_010551.1 278549 279121 R PFAM: flavodoxin/nitric oxide synthase; KEGG: bam:Bamb_0234 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase complement(278549..279121) Burkholderia ambifaria MC40-6 6176335 YP_001806960.1 CDS BamMC406_0243 NC_010551.1 279338 279940 R PFAM: PEBP family protein; KEGG: bam:Bamb_0235 YbhB and YbcL; PEBP family protein complement(279338..279940) Burkholderia ambifaria MC40-6 6177081 YP_001806961.1 CDS pyrE NC_010551.1 280180 280866 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(280180..280866) Burkholderia ambifaria MC40-6 6178083 YP_001806962.1 CDS BamMC406_0245 NC_010551.1 281327 283597 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 281327..283597 Burkholderia ambifaria MC40-6 6176304 YP_001806963.1 CDS BamMC406_0246 NC_010551.1 283735 287325 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(283735..287325) Burkholderia ambifaria MC40-6 6176519 YP_001806964.1 CDS BamMC406_0247 NC_010551.1 287646 287837 D KEGG: bam:Bamb_0239 hypothetical protein; hypothetical protein 287646..287837 Burkholderia ambifaria MC40-6 6176167 YP_001806965.1 CDS BamMC406_0248 NC_010551.1 287952 289049 R KEGG: bam:Bamb_0240 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(287952..289049) Burkholderia ambifaria MC40-6 6177695 YP_001806966.1 CDS BamMC406_0249 NC_010551.1 289263 289778 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_0241 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 289263..289778 Burkholderia ambifaria MC40-6 6177908 YP_001806967.1 CDS BamMC406_0250 NC_010551.1 289828 290220 R PFAM: protein of unknown function DUF805; KEGG: stp:Strop_0111 protein of unknown function DUF805; hypothetical protein complement(289828..290220) Burkholderia ambifaria MC40-6 6177664 YP_001806968.1 CDS BamMC406_0251 NC_010551.1 290612 291247 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_0242 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(290612..291247) Burkholderia ambifaria MC40-6 6177724 YP_001806969.1 CDS BamMC406_0252 NC_010551.1 291482 292087 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_0243 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(291482..292087) Burkholderia ambifaria MC40-6 6178092 YP_001806970.1 CDS BamMC406_0253 NC_010551.1 292110 292925 R PFAM: Domain of unknown function DUF1835; KEGG: bam:Bamb_0244 hypothetical protein; hypothetical protein complement(292110..292925) Burkholderia ambifaria MC40-6 6179014 YP_001806971.1 CDS BamMC406_0254 NC_010551.1 293056 294144 R TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_0245 phenylacetate-CoA oxygenase/reductase, PaaK subunit; phenylacetate-CoA oxygenase/oxygenase subunit PaaK complement(293056..294144) Burkholderia ambifaria MC40-6 6176687 YP_001806972.1 CDS BamMC406_0255 NC_010551.1 294147 294710 R TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: bam:Bamb_0246 phenylacetate-CoA oxygenase, PaaJ subunit; phenylacetate-CoA oxygenaseoxygenase subunit PaaJ complement(294147..294710) Burkholderia ambifaria MC40-6 6176227 YP_001806973.1 CDS BamMC406_0256 NC_010551.1 294736 295539 R TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bam:Bamb_0247 phenylacetate-CoA oxygenase, PaaI subunit; phenylacetate-CoA oxygenase subunit PaaI complement(294736..295539) Burkholderia ambifaria MC40-6 6177500 YP_001806974.1 CDS paaB NC_010551.1 295550 295834 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB complement(295550..295834) Burkholderia ambifaria MC40-6 6177917 YP_001806975.1 CDS paaA NC_010551.1 295871 296869 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA complement(295871..296869) Burkholderia ambifaria MC40-6 6177720 YP_001806976.1 CDS BamMC406_0259 NC_010551.1 297071 298342 D PFAM: lipolytic protein G-D-S-L family; KEGG: bam:Bamb_0250 lipolytic enzyme, G-D-S-L family; GDSL family lipase 297071..298342 Burkholderia ambifaria MC40-6 6177913 YP_001806977.1 CDS BamMC406_0260 NC_010551.1 305142 305624 D KEGG: bam:Bamb_0251 hypothetical protein; hypothetical protein 305142..305624 Burkholderia ambifaria MC40-6 6177958 YP_001806978.1 CDS BamMC406_0261 NC_010551.1 306816 308006 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 306816..308006 Burkholderia ambifaria MC40-6 6178023 YP_001806979.1 CDS secE NC_010551.1 308185 308565 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 308185..308565 Burkholderia ambifaria MC40-6 6176289 YP_001806980.1 CDS nusG NC_010551.1 308567 309124 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 308567..309124 Burkholderia ambifaria MC40-6 6176225 YP_001806981.1 CDS rplK NC_010551.1 309265 309696 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 309265..309696 Burkholderia ambifaria MC40-6 6176390 YP_001806982.1 CDS rplA NC_010551.1 309697 310395 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 309697..310395 Burkholderia ambifaria MC40-6 6177496 YP_001806983.1 CDS rplJ NC_010551.1 310703 311200 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 310703..311200 Burkholderia ambifaria MC40-6 6177588 YP_001806984.1 CDS rplL NC_010551.1 311264 311638 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 311264..311638 Burkholderia ambifaria MC40-6 6176667 YP_001806985.1 CDS rpoB NC_010551.1 312016 316122 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 312016..316122 Burkholderia ambifaria MC40-6 6177653 YP_001806986.1 CDS BamMC406_0269 NC_010551.1 316144 320385 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 316144..320385 Burkholderia ambifaria MC40-6 6178796 YP_001806987.1 CDS BamMC406_0270 NC_010551.1 320627 322474 D KEGG: bam:Bamb_0261 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 320627..322474 Burkholderia ambifaria MC40-6 6177655 YP_001806988.1 CDS rpsL NC_010551.1 322702 323082 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 322702..323082 Burkholderia ambifaria MC40-6 6177912 YP_001806989.1 CDS BamMC406_0272 NC_010551.1 323255 323725 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 323255..323725 Burkholderia ambifaria MC40-6 6177985 YP_001806990.1 CDS BamMC406_0273 NC_010551.1 323849 325951 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 323849..325951 Burkholderia ambifaria MC40-6 6176364 YP_001806991.1 CDS BamMC406_0274 NC_010551.1 325993 327183 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 325993..327183 Burkholderia ambifaria MC40-6 6176234 YP_001806992.1 CDS rpsJ NC_010551.1 327468 327779 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 327468..327779 Burkholderia ambifaria MC40-6 6177977 YP_001806993.1 CDS rplC NC_010551.1 327957 328607 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 327957..328607 Burkholderia ambifaria MC40-6 6177775 YP_001806994.1 CDS rplD NC_010551.1 328607 329227 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 328607..329227 Burkholderia ambifaria MC40-6 6177984 YP_001806995.1 CDS rplW NC_010551.1 329224 329538 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 329224..329538 Burkholderia ambifaria MC40-6 6178255 YP_001806996.1 CDS rplB NC_010551.1 329541 330368 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 329541..330368 Burkholderia ambifaria MC40-6 6177494 YP_001806997.1 CDS rpsS NC_010551.1 330379 330654 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 330379..330654 Burkholderia ambifaria MC40-6 6176323 YP_001806998.1 CDS rplV NC_010551.1 330667 330996 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 330667..330996 Burkholderia ambifaria MC40-6 6177607 YP_001806999.1 CDS rpsC NC_010551.1 331008 331808 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 331008..331808 Burkholderia ambifaria MC40-6 6178022 YP_001807000.1 CDS rplP NC_010551.1 331811 332227 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 331811..332227 Burkholderia ambifaria MC40-6 6177132 YP_001807001.1 CDS BamMC406_0284 NC_010551.1 332237 332431 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 332237..332431 Burkholderia ambifaria MC40-6 6179061 YP_001807002.1 CDS rpsQ NC_010551.1 332428 332700 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 332428..332700 Burkholderia ambifaria MC40-6 6176239 YP_001807003.1 CDS rplN NC_010551.1 333011 333379 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 333011..333379 Burkholderia ambifaria MC40-6 6177506 YP_001807004.1 CDS rplX NC_010551.1 333389 333697 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 333389..333697 Burkholderia ambifaria MC40-6 6178000 YP_001807005.1 CDS rplE NC_010551.1 333714 334253 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 333714..334253 Burkholderia ambifaria MC40-6 6177657 YP_001807006.1 CDS rpsN NC_010551.1 334261 334566 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 334261..334566 Burkholderia ambifaria MC40-6 6178037 YP_001807007.1 CDS rpsH NC_010551.1 334581 334976 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 334581..334976 Burkholderia ambifaria MC40-6 6177566 YP_001807008.1 CDS rplF NC_010551.1 334995 335525 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 334995..335525 Burkholderia ambifaria MC40-6 6177541 YP_001807009.1 CDS rplR NC_010551.1 335538 335903 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 335538..335903 Burkholderia ambifaria MC40-6 6176250 YP_001807010.1 CDS rpsE NC_010551.1 335918 336436 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 335918..336436 Burkholderia ambifaria MC40-6 6176761 YP_001807011.1 CDS rpmD NC_010551.1 336452 336634 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 336452..336634 Burkholderia ambifaria MC40-6 6176359 YP_001807012.1 CDS rplO NC_010551.1 336661 337095 D late assembly protein; 50S ribosomal protein L15 336661..337095 Burkholderia ambifaria MC40-6 6177604 YP_001807013.1 CDS secY NC_010551.1 337210 338487 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 337210..338487 Burkholderia ambifaria MC40-6 6177513 YP_001807014.1 CDS infA NC_010551.1 338497 338715 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 338497..338715 Burkholderia ambifaria MC40-6 6177526 YP_001807015.1 CDS rpmJ NC_010551.1 338736 338852 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 338736..338852 Burkholderia ambifaria MC40-6 6177512 YP_001807016.1 CDS rpsM NC_010551.1 338891 339256 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 338891..339256 Burkholderia ambifaria MC40-6 6177553 YP_001807017.1 CDS BamMC406_0300 NC_010551.1 339285 339686 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 339285..339686 Burkholderia ambifaria MC40-6 6178128 YP_001807018.1 CDS rpsD NC_010551.1 339843 340466 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 339843..340466 Burkholderia ambifaria MC40-6 6178228 YP_001807019.1 CDS BamMC406_0302 NC_010551.1 340591 341568 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 340591..341568 Burkholderia ambifaria MC40-6 6177529 YP_001807020.1 CDS rplQ NC_010551.1 341705 342100 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 341705..342100 Burkholderia ambifaria MC40-6 6177509 YP_001807021.1 CDS BamMC406_0304 NC_010551.1 342301 342627 D PFAM: CutA1 divalent ion tolerance protein; KEGG: bam:Bamb_0295 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 342301..342627 Burkholderia ambifaria MC40-6 6177495 YP_001807022.1 CDS BamMC406_0305 NC_010551.1 342620 344455 D PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: bam:Bamb_0296 protein-disulfide reductase; protein-disulfide reductase 342620..344455 Burkholderia ambifaria MC40-6 6178135 YP_001807023.1 CDS BamMC406_0306 NC_010551.1 344566 345531 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(344566..345531) Burkholderia ambifaria MC40-6 6178057 YP_001807024.1 CDS engB NC_010551.1 345818 346477 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(345818..346477) Burkholderia ambifaria MC40-6 6177587 YP_001807025.1 CDS BamMC406_0308 NC_010551.1 346695 347348 D PFAM: cytochrome c class I; KEGG: bam:Bamb_0299 cytochrome c, class I; cytochrome c class I 346695..347348 Burkholderia ambifaria MC40-6 6177546 YP_001807026.1 CDS BamMC406_0309 NC_010551.1 347552 349768 D PFAM: ResB family protein; KEGG: bam:Bamb_0300 ResB family protein; ResB family protein 347552..349768 Burkholderia ambifaria MC40-6 6177518 YP_001807027.1 CDS BamMC406_0310 NC_010551.1 349773 350963 D TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: bam:Bamb_0301 cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB 349773..350963 Burkholderia ambifaria MC40-6 6176133 YP_001807028.1 CDS BamMC406_0311 NC_010551.1 351122 352117 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 351122..352117 Burkholderia ambifaria MC40-6 6177600 YP_001807029.1 CDS BamMC406_0312 NC_010551.1 352138 352827 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 352138..352827 Burkholderia ambifaria MC40-6 6178067 YP_001807030.1 CDS BamMC406_0313 NC_010551.1 352914 353192 R KEGG: bam:Bamb_0304 putative lipoprotein; putative lipoprotein complement(352914..353192) Burkholderia ambifaria MC40-6 6178479 YP_001807031.1 CDS cyaY NC_010551.1 353232 353558 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 353232..353558 Burkholderia ambifaria MC40-6 6177492 YP_001807032.1 CDS BamMC406_0315 NC_010551.1 353654 356041 R KEGG: bam:Bamb_0306 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein complement(353654..356041) Burkholderia ambifaria MC40-6 6178094 YP_001807033.1 CDS BamMC406_0316 NC_010551.1 356268 357191 D KEGG: bam:Bamb_0307 hypothetical protein; hypothetical protein 356268..357191 Burkholderia ambifaria MC40-6 6177594 YP_001807034.1 CDS BamMC406_0317 NC_010551.1 357188 357820 D KEGG: bam:Bamb_0308 hypothetical protein; hypothetical protein 357188..357820 Burkholderia ambifaria MC40-6 6176708 YP_001807035.1 CDS BamMC406_0318 NC_010551.1 357817 358689 D KEGG: bam:Bamb_0309 hypothetical protein; hypothetical protein 357817..358689 Burkholderia ambifaria MC40-6 6178008 YP_001807036.1 CDS BamMC406_0319 NC_010551.1 358686 360347 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: bam:Bamb_0310 type IV pilus secretin PilQ; type IV pilus secretin PilQ 358686..360347 Burkholderia ambifaria MC40-6 6175988 YP_001807037.1 CDS BamMC406_0320 NC_010551.1 360433 360942 D PFAM: shikimate kinase; KEGG: bam:Bamb_0311 shikimate kinase; shikimate kinase 360433..360942 Burkholderia ambifaria MC40-6 6177531 YP_001807038.1 CDS aroB NC_010551.1 360939 362018 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 360939..362018 Burkholderia ambifaria MC40-6 6177488 YP_001807039.1 CDS BamMC406_0322 NC_010551.1 362060 363268 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 362060..363268 Burkholderia ambifaria MC40-6 6177931 YP_001807040.1 CDS BamMC406_0323 NC_010551.1 363357 364691 D with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 363357..364691 Burkholderia ambifaria MC40-6 6178093 YP_001807041.1 CDS BamMC406_0324 NC_010551.1 364788 365672 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_0315 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 364788..365672 Burkholderia ambifaria MC40-6 6178123 YP_001807042.1 CDS BamMC406_0325 NC_010551.1 365669 366514 D with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 365669..366514 Burkholderia ambifaria MC40-6 6177511 YP_001807043.1 CDS ugpC NC_010551.1 366547 367632 D part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 366547..367632 Burkholderia ambifaria MC40-6 6177611 YP_001807044.1 CDS ugpQ NC_010551.1 367661 368425 D hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 367661..368425 Burkholderia ambifaria MC40-6 6178260 YP_001807045.1 CDS BamMC406_0328 NC_010551.1 368590 369321 R PFAM: OmpW family protein; KEGG: bam:Bamb_0319 OmpW family protein; OmpW family protein complement(368590..369321) Burkholderia ambifaria MC40-6 6175992 YP_001807046.1 CDS BamMC406_0329 NC_010551.1 369515 370228 D PFAM: protein of unknown function DUF1568; KEGG: bam:Bamb_0320 protein of unknown function DUF1568; hypothetical protein 369515..370228 Burkholderia ambifaria MC40-6 6178001 YP_001807047.1 CDS BamMC406_0330 NC_010551.1 370519 375222 D PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bam:Bamb_0321 glutamate synthase (ferredoxin); glutamate synthase 370519..375222 Burkholderia ambifaria MC40-6 6177507 YP_001807048.1 CDS gltD NC_010551.1 375308 376774 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 375308..376774 Burkholderia ambifaria MC40-6 6177950 YP_001807049.1 CDS BamMC406_0332 NC_010551.1 376832 377227 R KEGG: bam:Bamb_0323 hypothetical protein; hypothetical protein complement(376832..377227) Burkholderia ambifaria MC40-6 6178113 YP_001807050.1 CDS BamMC406_0333 NC_010551.1 377303 378436 R KEGG: bam:Bamb_0324 hypothetical protein; hypothetical protein complement(377303..378436) Burkholderia ambifaria MC40-6 6178106 YP_001807051.1 CDS BamMC406_0334 NC_010551.1 378949 380463 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: bam:Bamb_0325 amino acid carrier protein; amino acid carrier protein 378949..380463 Burkholderia ambifaria MC40-6 6178161 YP_001807052.1 CDS BamMC406_0335 NC_010551.1 380460 381008 D TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: bam:Bamb_0326 2'-5' RNA ligase; 2'-5' RNA ligase 380460..381008 Burkholderia ambifaria MC40-6 6177585 YP_001807053.1 CDS BamMC406_0336 NC_010551.1 381074 382843 R PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_0327 ABC transporter domain protein; ABC transporter complement(381074..382843) Burkholderia ambifaria MC40-6 6177557 YP_001807054.1 CDS BamMC406_0337 NC_010551.1 383467 384603 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_0328 FAD dependent oxidoreductase; FAD dependent oxidoreductase 383467..384603 Burkholderia ambifaria MC40-6 6178119 YP_001807055.1 CDS BamMC406_0338 NC_010551.1 384636 384833 D with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 384636..384833 Burkholderia ambifaria MC40-6 6177501 YP_001807056.1 CDS thiG NC_010551.1 384872 385687 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 384872..385687 Burkholderia ambifaria MC40-6 6178380 YP_001807057.1 CDS BamMC406_0340 NC_010551.1 385684 386808 D KEGG: bam:Bamb_0331 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 385684..386808 Burkholderia ambifaria MC40-6 6178071 YP_001807058.1 CDS BamMC406_0341 NC_010551.1 386893 387714 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_0332 ABC transporter related; ABC transporter-like protein 386893..387714 Burkholderia ambifaria MC40-6 6178143 YP_001807059.1 CDS BamMC406_0342 NC_010551.1 387711 388478 D PFAM: protein of unknown function DUF140; KEGG: bam:Bamb_0333 protein of unknown function DUF140; hypothetical protein 387711..388478 Burkholderia ambifaria MC40-6 6176314 YP_001807060.1 CDS BamMC406_0343 NC_010551.1 388509 389072 D PFAM: Mammalian cell entry related domain protein; KEGG: bam:Bamb_0334 mammalian cell entry related domain protein; hypothetical protein 388509..389072 Burkholderia ambifaria MC40-6 6177674 YP_001807061.1 CDS BamMC406_0344 NC_010551.1 389104 390069 D PFAM: VacJ family lipoprotein; KEGG: bam:Bamb_0335 VacJ family lipoprotein; VacJ family lipoprotein 389104..390069 Burkholderia ambifaria MC40-6 6178149 YP_001807062.1 CDS BamMC406_0345 NC_010551.1 390177 390809 D PFAM: toluene tolerance family protein; KEGG: bam:Bamb_0336 toluene tolerance family protein; toluene tolerance family protein 390177..390809 Burkholderia ambifaria MC40-6 6178167 YP_001807063.1 CDS BamMC406_0346 NC_010551.1 390806 391081 D KEGG: bam:Bamb_0337 hypothetical protein; hypothetical protein 390806..391081 Burkholderia ambifaria MC40-6 6176370 YP_001807064.1 CDS BamMC406_0347 NC_010551.1 391274 392200 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bvi:Bcep1808_0399 ABC transporter related; ABC transporter-like protein 391274..392200 Burkholderia ambifaria MC40-6 6176252 YP_001807065.1 CDS BamMC406_0348 NC_010551.1 392197 393042 D PFAM: ABC-2 type transporter; KEGG: bam:Bamb_0339 ABC-2 type transporter; ABC-2 type transporter 392197..393042 Burkholderia ambifaria MC40-6 6176362 YP_001807066.1 CDS BamMC406_0349 NC_010551.1 393095 393334 D PFAM: BolA family protein; KEGG: bam:Bamb_0340 BolA family protein; BolA family protein 393095..393334 Burkholderia ambifaria MC40-6 6177475 YP_001807067.1 CDS BamMC406_0350 NC_010551.1 393348 394697 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 393348..394697 Burkholderia ambifaria MC40-6 6177603 YP_001807068.1 CDS hisG NC_010551.1 394694 395347 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 394694..395347 Burkholderia ambifaria MC40-6 6177865 YP_001807069.1 CDS hisD NC_010551.1 395372 396688 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 395372..396688 Burkholderia ambifaria MC40-6 6177515 YP_001807070.1 CDS BamMC406_0353 NC_010551.1 396810 397883 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 396810..397883 Burkholderia ambifaria MC40-6 6177670 YP_001807071.1 CDS hisB NC_010551.1 397946 398533 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 397946..398533 Burkholderia ambifaria MC40-6 6178349 YP_001807072.1 CDS BamMC406_0355 NC_010551.1 398596 399216 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: bam:Bamb_0346 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 398596..399216 Burkholderia ambifaria MC40-6 6178273 YP_001807073.1 CDS hisH NC_010551.1 399213 399854 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 399213..399854 Burkholderia ambifaria MC40-6 6177627 YP_001807074.1 CDS BamMC406_0357 NC_010551.1 400018 400773 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 400018..400773 Burkholderia ambifaria MC40-6 6178259 YP_001807075.1 CDS BamMC406_0358 NC_010551.1 400880 401653 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 400880..401653 Burkholderia ambifaria MC40-6 6177599 YP_001807076.1 CDS hisI NC_010551.1 401653 402069 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 401653..402069 Burkholderia ambifaria MC40-6 6177622 YP_001807077.1 CDS hisE NC_010551.1 402066 402431 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 402066..402431 Burkholderia ambifaria MC40-6 6177677 YP_001807078.1 CDS BamMC406_0361 NC_010551.1 402503 402895 D KEGG: bam:Bamb_0352 membrane protein; membrane protein 402503..402895 Burkholderia ambifaria MC40-6 6177614 YP_001807079.1 CDS BamMC406_0362 NC_010551.1 402926 403291 D PFAM: histidine triad (HIT) protein; KEGG: bam:Bamb_0353 histidine triad (HIT) protein; histidine triad (HIT) protein 402926..403291 Burkholderia ambifaria MC40-6 6177935 YP_001807080.1 CDS tatA NC_010551.1 403385 403615 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 403385..403615 Burkholderia ambifaria MC40-6 6177605 YP_001807081.1 CDS tatB NC_010551.1 403642 404172 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: bam:Bamb_0355 sec-independent translocase; sec-independent translocase 403642..404172 Burkholderia ambifaria MC40-6 6178239 YP_001807082.1 CDS BamMC406_0365 NC_010551.1 404214 404999 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: bam:Bamb_0356 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 404214..404999 Burkholderia ambifaria MC40-6 6177635 YP_001807083.1 CDS BamMC406_0366 NC_010551.1 405263 406468 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bam:Bamb_0357 peptidase S1 and S6, chymotrypsin/Hap; 2-alkenal reductase complement(405263..406468) Burkholderia ambifaria MC40-6 6177597 YP_001807084.1 CDS BamMC406_0367 NC_010551.1 406490 407236 D PFAM: protein of unknown function DUF34; KEGG: bam:Bamb_0358 protein of unknown function DUF34; hypothetical protein 406490..407236 Burkholderia ambifaria MC40-6 6178200 YP_001807085.1 CDS BamMC406_0368 NC_010551.1 407455 408075 D KEGG: bam:Bamb_0359 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 407455..408075 Burkholderia ambifaria MC40-6 6176260 YP_001807086.1 CDS BamMC406_0369 NC_010551.1 408075 409457 D PFAM: Cytochrome b/b6 domain; KEGG: bam:Bamb_0360 cytochrome b/b6, N-terminal domain; cytochrome b/b6 domain-containing protein 408075..409457 Burkholderia ambifaria MC40-6 6176061 YP_001807087.1 CDS BamMC406_0370 NC_010551.1 409479 410237 D PFAM: cytochrome c1; KEGG: bam:Bamb_0361 cytochrome c1; cytochrome c1 409479..410237 Burkholderia ambifaria MC40-6 6177590 YP_001807088.1 CDS BamMC406_0371 NC_010551.1 410332 410943 D PFAM: Glutathione S-transferase domain; KEGG: bmu:Bmul_0347 glutathione S-transferase domain; glutathione S-transferase domain-containing protein 410332..410943 Burkholderia ambifaria MC40-6 6178277 YP_001807089.1 CDS BamMC406_0372 NC_010551.1 411015 411536 D PFAM: Stringent starvation protein B; KEGG: bam:Bamb_0363 ClpXP protease specificity-enhancing factor; ClpXP protease specificity-enhancing factor 411015..411536 Burkholderia ambifaria MC40-6 6178370 YP_001807090.1 CDS BamMC406_0373 NC_010551.1 411727 412137 R KEGG: bte:BTH_I2726 GP47; Phage-like protein endonuclease-like protein complement(411727..412137) Burkholderia ambifaria MC40-6 6178251 YP_001807091.1 CDS BamMC406_0374 NC_010551.1 412255 413037 R KEGG: bte:BTH_I2724 hypothetical protein; hypothetical protein complement(412255..413037) Burkholderia ambifaria MC40-6 6178236 YP_001807092.1 CDS BamMC406_0375 NC_010551.1 413701 415407 D PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: rso:RSc1779 probable activation/secretion signal peptide protein; polypeptide-transport-associated domain-containing protein 413701..415407 Burkholderia ambifaria MC40-6 6178165 YP_001807093.1 CDS BamMC406_0376 NC_010551.1 415487 416389 D KEGG: bvi:Bcep1808_6899 putative lipoprotein transmembrane; putative lipoprotein transmembrane 415487..416389 Burkholderia ambifaria MC40-6 6178298 YP_001807094.1 CDS BamMC406_0377 NC_010551.1 416585 425971 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: rso:RSc1775 probable hemagglutinin-related protein; filamentous hemagglutinin outer membrane protein 416585..425971 Burkholderia ambifaria MC40-6 6177707 YP_001807095.1 CDS BamMC406_0378 NC_010551.1 426299 426823 D hypothetical protein 426299..426823 Burkholderia ambifaria MC40-6 6176014 YP_001807096.1 CDS BamMC406_0381 NC_010551.1 428962 429165 D KEGG: bam:Bamb_0365 hypothetical protein; hypothetical protein 428962..429165 Burkholderia ambifaria MC40-6 6178271 YP_001807097.1 CDS BamMC406_0382 NC_010551.1 429248 430048 R PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: bam:Bamb_0366 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(429248..430048) Burkholderia ambifaria MC40-6 6178308 YP_001807098.1 CDS BamMC406_0383 NC_010551.1 430361 433534 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bam:Bamb_0367 rhs element Vgr protein; ImpA family type VI secretion-associated protein 430361..433534 Burkholderia ambifaria MC40-6 6176804 YP_001807099.1 CDS BamMC406_0384 NC_010551.1 433585 438237 D TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: bam:Bamb_0368 YD repeat protein; YD repeat-containing protein 433585..438237 Burkholderia ambifaria MC40-6 6176793 YP_001807100.1 CDS BamMC406_0385 NC_010551.1 438245 438649 D hypothetical protein 438245..438649 Burkholderia ambifaria MC40-6 6176383 YP_001807101.1 CDS BamMC406_0388 NC_010551.1 440771 440941 D KEGG: asa:ASA_1312 hypothetical protein; hypothetical protein 440771..440941 Burkholderia ambifaria MC40-6 6178606 YP_001807102.1 CDS BamMC406_0389 NC_010551.1 441179 441742 D KEGG: bam:Bamb_0372 hypothetical protein; hypothetical protein 441179..441742 Burkholderia ambifaria MC40-6 6176238 YP_001807103.1 CDS BamMC406_0390 NC_010551.1 442312 442695 D KEGG: bam:Bamb_0369 hypothetical protein; hypothetical protein 442312..442695 Burkholderia ambifaria MC40-6 6177723 YP_001807104.1 CDS BamMC406_0391 NC_010551.1 443031 443510 D KEGG: rme:Rmet_4799 hypothetical protein; hypothetical protein 443031..443510 Burkholderia ambifaria MC40-6 6178530 YP_001807105.1 CDS BamMC406_0392 NC_010551.1 443691 444116 D KEGG: lic:LIC12261 hypothetical protein; hypothetical protein 443691..444116 Burkholderia ambifaria MC40-6 6177774 YP_001807106.1 CDS BamMC406_0393 NC_010551.1 444237 444488 D KEGG: bch:Bcen2424_0017 hypothetical protein; hypothetical protein 444237..444488 Burkholderia ambifaria MC40-6 6177753 YP_001807107.1 CDS BamMC406_0394 NC_010551.1 444482 444817 D KEGG: bam:Bamb_0373 hypothetical protein; hypothetical protein 444482..444817 Burkholderia ambifaria MC40-6 6178340 YP_001807108.1 CDS BamMC406_0395 NC_010551.1 445210 445518 D KEGG: bam:Bamb_0374 hypothetical protein; hypothetical protein 445210..445518 Burkholderia ambifaria MC40-6 6177684 YP_001807109.1 CDS BamMC406_0396 NC_010551.1 445535 445789 D KEGG: bam:Bamb_0375 hypothetical protein; hypothetical protein 445535..445789 Burkholderia ambifaria MC40-6 6177675 YP_001807110.1 CDS BamMC406_0397 NC_010551.1 446095 446460 D KEGG: bam:Bamb_0376 hypothetical protein; hypothetical protein 446095..446460 Burkholderia ambifaria MC40-6 6178262 YP_001807111.1 CDS BamMC406_0398 NC_010551.1 446554 447336 R KEGG: bam:Bamb_0377 hypothetical protein; hypothetical protein complement(446554..447336) Burkholderia ambifaria MC40-6 6176790 YP_001807112.1 CDS BamMC406_0399 NC_010551.1 447333 448679 R TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bam:Bamb_0378 protein of unknown function DUF876; type VI secretion protein complement(447333..448679) Burkholderia ambifaria MC40-6 6178376 YP_001807113.1 CDS BamMC406_0400 NC_010551.1 448784 449392 R KEGG: bam:Bamb_0379 hypothetical protein; hypothetical protein complement(448784..449392) Burkholderia ambifaria MC40-6 6177679 YP_001807114.1 CDS BamMC406_0401 NC_010551.1 449769 450407 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bam:Bamb_0380 tetratricopeptide TPR_2 repeat protein; hypothetical protein 449769..450407 Burkholderia ambifaria MC40-6 6177609 YP_001807115.1 CDS BamMC406_0402 NC_010551.1 450452 450967 D TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: bam:Bamb_0381 uncharacterised conserved protein UCP028301; type VI secretion protein 450452..450967 Burkholderia ambifaria MC40-6 6177705 YP_001807116.1 CDS BamMC406_0403 NC_010551.1 450983 452473 D TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: bam:Bamb_0382 protein of unknown function DUF877; EvpB family type VI secretion protein 450983..452473 Burkholderia ambifaria MC40-6 6178478 YP_001807117.1 CDS BamMC406_0404 NC_010551.1 452544 453047 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: bam:Bamb_0383 protein of unknown function DUF796; Hcp1 family type VI secretion system effector 452544..453047 Burkholderia ambifaria MC40-6 6178299 YP_001807118.1 CDS BamMC406_0405 NC_010551.1 453110 453595 D TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: bam:Bamb_0384 protein of unknown function DUF1316; type VI secretion system lysozyme-like protein 453110..453595 Burkholderia ambifaria MC40-6 6178174 YP_001807119.1 CDS BamMC406_0406 NC_010551.1 453673 455508 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bam:Bamb_0385 protein of unknown function DUF879; type VI secretion protein 453673..455508 Burkholderia ambifaria MC40-6 6178366 YP_001807120.1 CDS BamMC406_0407 NC_010551.1 455472 456572 D TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: bam:Bamb_0386 protein of unknown function DUF1305; type VI secretion protein 455472..456572 Burkholderia ambifaria MC40-6 6177691 YP_001807121.1 CDS BamMC406_0408 NC_010551.1 456616 459285 D KEGG: bam:Bamb_0387 ATPase AAA-2 domain protein; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase 456616..459285 Burkholderia ambifaria MC40-6 6177634 YP_001807122.1 CDS BamMC406_0409 NC_010551.1 459325 460446 D TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: bam:Bamb_0388 ImpA domain protein; ImpA family type VI secretion-associated protein 459325..460446 Burkholderia ambifaria MC40-6 6178484 YP_001807123.1 CDS BamMC406_0410 NC_010551.1 460526 463087 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bch:Bcen2424_0475 rhs element Vgr protein; ImpA family type VI secretion-associated protein 460526..463087 Burkholderia ambifaria MC40-6 6178300 YP_001807124.1 CDS BamMC406_0411 NC_010551.1 463087 464109 D KEGG: bch:Bcen2424_0476 hypothetical protein; hypothetical protein 463087..464109 Burkholderia ambifaria MC40-6 6177726 YP_001807125.1 CDS BamMC406_0412 NC_010551.1 464096 464254 D KEGG: bch:Bcen2424_0477 hypothetical protein; hypothetical protein 464096..464254 Burkholderia ambifaria MC40-6 6178554 YP_001807126.1 CDS BamMC406_0413 NC_010551.1 464247 464402 D hypothetical protein 464247..464402 Burkholderia ambifaria MC40-6 6177773 YP_001807127.1 CDS BamMC406_0414 NC_010551.1 464414 465265 D KEGG: bmu:Bmul_2920 hypothetical protein; hypothetical protein 464414..465265 Burkholderia ambifaria MC40-6 6178357 YP_001807128.1 CDS BamMC406_0415 NC_010551.1 465258 467552 D KEGG: bmu:Bmul_2919 hypothetical protein; hypothetical protein 465258..467552 Burkholderia ambifaria MC40-6 6179060 YP_001807129.1 CDS BamMC406_0416 NC_010551.1 467739 468674 R KEGG: bch:Bcen2424_0478 hypothetical protein; hypothetical protein complement(467739..468674) Burkholderia ambifaria MC40-6 6178390 YP_001807130.1 CDS BamMC406_0417 NC_010551.1 468873 469571 R KEGG: bam:Bamb_0390 hypothetical protein; hypothetical protein complement(468873..469571) Burkholderia ambifaria MC40-6 6177510 YP_001807131.1 CDS BamMC406_0418 NC_010551.1 469588 470538 R PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_0391 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(469588..470538) Burkholderia ambifaria MC40-6 6176441 YP_001807132.1 CDS BamMC406_0419 NC_010551.1 470543 471532 R KEGG: bam:Bamb_0392 hypothetical protein; hypothetical protein complement(470543..471532) Burkholderia ambifaria MC40-6 6178225 YP_001807133.1 CDS BamMC406_0420 NC_010551.1 471529 475470 R TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bam:Bamb_0393 ImcF domain protein; type VI secretion protein IcmF complement(471529..475470) Burkholderia ambifaria MC40-6 6176746 YP_001807134.1 CDS BamMC406_0421 NC_010551.1 475772 476617 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bch:Bcen2424_0486 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin complement(475772..476617) Burkholderia ambifaria MC40-6 6178415 YP_001807135.1 CDS BamMC406_0422 NC_010551.1 476739 477701 D KEGG: bam:Bamb_0395 hypothetical protein; hypothetical protein 476739..477701 Burkholderia ambifaria MC40-6 6178249 YP_001807136.1 CDS BamMC406_0423 NC_010551.1 477869 478942 D PFAM: Mg2 transporter protein CorA family protein; KEGG: bam:Bamb_0396 Mg2+ transporter protein, CorA family protein; Mg2 transporter protein CorA family protein 477869..478942 Burkholderia ambifaria MC40-6 6178683 YP_001807137.1 CDS BamMC406_0424 NC_010551.1 479076 481244 R PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: bam:Bamb_0397 peptidase M1, membrane alanine aminopeptidase; peptidase M1 membrane alanine aminopeptidase complement(479076..481244) Burkholderia ambifaria MC40-6 6177767 YP_001807138.1 CDS BamMC406_0425 NC_010551.1 481394 481606 R KEGG: bam:Bamb_0398 hypothetical protein; hypothetical protein complement(481394..481606) Burkholderia ambifaria MC40-6 6177789 YP_001807139.1 CDS BamMC406_0426 NC_010551.1 481890 482384 D SMART: Water Stress and Hypersensitive response domain protein; KEGG: bam:Bamb_0399 hypothetical protein; water stress/hypersensitive response domain-containing protein 481890..482384 Burkholderia ambifaria MC40-6 6177783 YP_001807140.1 CDS BamMC406_0427 NC_010551.1 482519 483652 D PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: bam:Bamb_0401 methyltransferase small; methyltransferase small 482519..483652 Burkholderia ambifaria MC40-6 6178428 YP_001807141.1 CDS BamMC406_0428 NC_010551.1 483721 484632 D KEGG: bam:Bamb_0402 hypothetical protein; hypothetical protein 483721..484632 Burkholderia ambifaria MC40-6 6177538 YP_001807142.1 CDS BamMC406_0429 NC_010551.1 484700 485272 R PFAM: protein of unknown function DUF1415; KEGG: bam:Bamb_0403 protein of unknown function DUF1415; hypothetical protein complement(484700..485272) Burkholderia ambifaria MC40-6 6177810 YP_001807143.1 CDS BamMC406_0430 NC_010551.1 485355 485978 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_0404 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(485355..485978) Burkholderia ambifaria MC40-6 6177708 YP_001807144.1 CDS BamMC406_0431 NC_010551.1 486197 487480 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0405 major facilitator superfamily MFS_1; major facilitator transporter 486197..487480 Burkholderia ambifaria MC40-6 6178440 YP_001807145.1 CDS BamMC406_0432 NC_010551.1 487713 488318 D PFAM: nitroreductase; KEGG: bam:Bamb_0406 nitroreductase; nitroreductase 487713..488318 Burkholderia ambifaria MC40-6 6178953 YP_001807146.1 CDS BamMC406_0433 NC_010551.1 488278 489768 D KEGG: bam:Bamb_0407 molecular chaperone-like protein; molecular chaperone-like protein 488278..489768 Burkholderia ambifaria MC40-6 6178905 YP_001807147.1 CDS BamMC406_0434 NC_010551.1 489871 490074 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bam:Bamb_0408 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(489871..490074) Burkholderia ambifaria MC40-6 6177681 YP_001807148.1 CDS BamMC406_0435 NC_010551.1 490495 492093 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_0409 amino acid permease-associated region; amino acid permease-associated protein 490495..492093 Burkholderia ambifaria MC40-6 6177807 YP_001807149.1 CDS BamMC406_0436 NC_010551.1 492205 492996 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bam:Bamb_0410 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B complement(492205..492996) Burkholderia ambifaria MC40-6 6177640 YP_001807150.1 CDS BamMC406_0437 NC_010551.1 493218 493814 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(493218..493814) Burkholderia ambifaria MC40-6 6176184 YP_001807151.1 CDS BamMC406_0438 NC_010551.1 493828 494139 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: bam:Bamb_0412 glutaredoxin-like protein; glutaredoxin-like protein complement(493828..494139) Burkholderia ambifaria MC40-6 6177721 YP_001807152.1 CDS BamMC406_0439 NC_010551.1 494207 495049 R TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: bam:Bamb_0413 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase complement(494207..495049) Burkholderia ambifaria MC40-6 6177742 YP_001807153.1 CDS prfA NC_010551.1 495057 496139 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(495057..496139) Burkholderia ambifaria MC40-6 6178401 YP_001807154.1 CDS hemA NC_010551.1 496224 497522 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(496224..497522) Burkholderia ambifaria MC40-6 6178315 YP_001807155.1 CDS BamMC406_0442 NC_010551.1 497549 498310 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_0416 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(497549..498310) Burkholderia ambifaria MC40-6 6177760 YP_001807156.1 CDS BamMC406_0443 NC_010551.1 498482 498757 D KEGG: bam:Bamb_0417 hypothetical protein; hypothetical protein 498482..498757 Burkholderia ambifaria MC40-6 6177764 YP_001807157.1 CDS BamMC406_0444 NC_010551.1 498754 500568 D PFAM: creatinase; peptidase M24; KEGG: bam:Bamb_0418 peptidase M24; peptidase M24 498754..500568 Burkholderia ambifaria MC40-6 6177596 YP_001807158.1 CDS BamMC406_0445 NC_010551.1 500624 501175 D PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_0419 isochorismatase hydrolase; isochorismatase hydrolase 500624..501175 Burkholderia ambifaria MC40-6 6177573 YP_001807159.1 CDS BamMC406_0446 NC_010551.1 501172 501795 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_0420 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 501172..501795 Burkholderia ambifaria MC40-6 6177860 YP_001807160.1 CDS BamMC406_0447 NC_010551.1 501925 503637 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(501925..503637) Burkholderia ambifaria MC40-6 6177712 YP_001807161.1 CDS BamMC406_0448 NC_010551.1 503782 504096 R KEGG: bam:Bamb_0422 hypothetical protein; hypothetical protein complement(503782..504096) Burkholderia ambifaria MC40-6 6178379 YP_001807162.1 CDS BamMC406_0449 NC_010551.1 504193 505110 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0423 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(504193..505110) Burkholderia ambifaria MC40-6 6177898 YP_001807163.1 CDS BamMC406_0450 NC_010551.1 505303 506577 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0424 major facilitator superfamily MFS_1; major facilitator transporter 505303..506577 Burkholderia ambifaria MC40-6 6177784 YP_001807164.1 CDS BamMC406_0451 NC_010551.1 506680 507024 D PFAM: protein of unknown function DUF661; KEGG: bam:Bamb_0425 protein of unknown function DUF661; hypothetical protein 506680..507024 Burkholderia ambifaria MC40-6 6176766 YP_001807165.1 CDS BamMC406_0452 NC_010551.1 507496 508887 D TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: bam:Bamb_0426 GabA permease; GABA permease 507496..508887 Burkholderia ambifaria MC40-6 6178377 YP_001807166.1 CDS BamMC406_0453 NC_010551.1 509054 510148 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(509054..510148) Burkholderia ambifaria MC40-6 6176712 YP_001807167.1 CDS BamMC406_0454 NC_010551.1 510397 511575 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: bam:Bamb_0430 hypothetical protein; ubiquinone biosynthesis hydroxylase family protein 510397..511575 Burkholderia ambifaria MC40-6 6178392 YP_001807168.1 CDS BamMC406_0455 NC_010551.1 511666 512394 D KEGG: bam:Bamb_0431 protein-disulfide isomerase-like protein; protein-disulfide isomerase-like protein 511666..512394 Burkholderia ambifaria MC40-6 6178190 YP_001807169.1 CDS BamMC406_0456 NC_010551.1 512510 514309 D PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: bam:Bamb_0432 peptidase M61 domain protein; peptidase M61 domain-containing protein 512510..514309 Burkholderia ambifaria MC40-6 6177766 YP_001807170.1 CDS BamMC406_0457 NC_010551.1 514457 515053 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: bam:Bamb_0433 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) 514457..515053 Burkholderia ambifaria MC40-6 6178517 YP_001807171.1 CDS BamMC406_0458 NC_010551.1 515160 516074 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(515160..516074) Burkholderia ambifaria MC40-6 6176295 YP_001807172.1 CDS BamMC406_0459 NC_010551.1 516088 516714 R PFAM: adenylate cyclase; KEGG: bam:Bamb_0435 adenylate cyclase; adenylate cyclase complement(516088..516714) Burkholderia ambifaria MC40-6 6177806 YP_001807173.1 CDS trpC NC_010551.1 516714 517499 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(516714..517499) Burkholderia ambifaria MC40-6 6177646 YP_001807174.1 CDS trpD NC_010551.1 517529 518560 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(517529..518560) Burkholderia ambifaria MC40-6 6177765 YP_001807175.1 CDS BamMC406_0462 NC_010551.1 518574 519173 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(518574..519173) Burkholderia ambifaria MC40-6 6176197 YP_001807176.1 CDS BamMC406_0463 NC_010551.1 519187 520680 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(519187..520680) Burkholderia ambifaria MC40-6 6177901 YP_001807177.1 CDS BamMC406_0464 NC_010551.1 521039 521794 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_0440 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(521039..521794) Burkholderia ambifaria MC40-6 6177758 YP_001807178.1 CDS BamMC406_0465 NC_010551.1 521799 522485 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(521799..522485) Burkholderia ambifaria MC40-6 6177801 YP_001807179.1 CDS apaG NC_010551.1 522587 523030 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 522587..523030 Burkholderia ambifaria MC40-6 6178369 YP_001807180.1 CDS BamMC406_0467 NC_010551.1 523048 523191 R KEGG: rso:RSc2877 probable transmembrane protein; putative transmembrane protein complement(523048..523191) Burkholderia ambifaria MC40-6 6177820 YP_001807181.1 CDS BamMC406_0468 NC_010551.1 523220 524344 D PFAM: MltA domain protein; 3D domain protein; KEGG: bam:Bamb_0443 MltA domain protein; MltA domain-containing protein 523220..524344 Burkholderia ambifaria MC40-6 6178279 YP_001807182.1 CDS BamMC406_0469 NC_010551.1 524477 525775 R TIGRFAM: phenylacetate-CoA ligase; KEGG: bam:Bamb_0444 phenylacetate-CoA ligase; phenylacetate-CoA ligase complement(524477..525775) Burkholderia ambifaria MC40-6 6178411 YP_001807183.1 CDS BamMC406_0470 NC_010551.1 525814 526266 R TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_0445 phenylacetic acid degradation protein PaaD; phenylacetic acid degradation protein PaaD complement(525814..526266) Burkholderia ambifaria MC40-6 6176449 YP_001807184.1 CDS BamMC406_0471 NC_010551.1 526268 527059 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(526268..527059) Burkholderia ambifaria MC40-6 6178507 YP_001807185.1 CDS BamMC406_0472 NC_010551.1 527105 528307 R catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase complement(527105..528307) Burkholderia ambifaria MC40-6 6177737 YP_001807186.1 CDS BamMC406_0473 NC_010551.1 528395 530101 R TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_0448 phenylacetic acid degradation protein PaaN; phenylacetic acid degradation protein PaaN complement(528395..530101) Burkholderia ambifaria MC40-6 6176283 YP_001807187.1 CDS BamMC406_0474 NC_010551.1 530231 531007 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 530231..531007 Burkholderia ambifaria MC40-6 6177088 YP_001807188.1 CDS BamMC406_0475 NC_010551.1 537218 539230 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bam:Bamb_0450 molybdopterin oxidoreductase; molybdopterin oxidoreductase 537218..539230 Burkholderia ambifaria MC40-6 6178449 YP_001807189.1 CDS BamMC406_0476 NC_010551.1 539367 541040 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 539367..541040 Burkholderia ambifaria MC40-6 6176470 YP_001807190.1 CDS BamMC406_0477 NC_010551.1 541378 542535 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_0452 porin, gram-negative type; porin complement(541378..542535) Burkholderia ambifaria MC40-6 6178799 YP_001807191.1 CDS BamMC406_0478 NC_010551.1 542813 543439 D KEGG: bam:Bamb_0453 ubiquinone biosynthesis protein COQ7-like protein; ubiquinone biosynthesis protein COQ7-like protein 542813..543439 Burkholderia ambifaria MC40-6 6177756 YP_001807192.1 CDS BamMC406_0479 NC_010551.1 543828 544256 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 543828..544256 Burkholderia ambifaria MC40-6 6177905 YP_001807193.1 CDS mraW NC_010551.1 544280 545221 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: bam:Bamb_0455 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 544280..545221 Burkholderia ambifaria MC40-6 6178525 YP_001807194.1 CDS BamMC406_0481 NC_010551.1 545218 545559 D PFAM: cell division protein FtsL; KEGG: bam:Bamb_0456 cell division protein FtsL; cell division protein FtsL 545218..545559 Burkholderia ambifaria MC40-6 6177906 YP_001807195.1 CDS BamMC406_0482 NC_010551.1 545556 547403 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: bam:Bamb_0457 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 545556..547403 Burkholderia ambifaria MC40-6 6178716 YP_001807196.1 CDS murE NC_010551.1 547400 548938 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 547400..548938 Burkholderia ambifaria MC40-6 6178458 YP_001807197.1 CDS BamMC406_0484 NC_010551.1 548935 550341 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: bam:Bamb_0459 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 548935..550341 Burkholderia ambifaria MC40-6 6177822 YP_001807198.1 CDS mraY NC_010551.1 550358 551527 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 550358..551527 Burkholderia ambifaria MC40-6 6179099 YP_001807199.1 CDS murD NC_010551.1 551555 553063 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 551555..553063 Burkholderia ambifaria MC40-6 6178483 YP_001807200.1 CDS BamMC406_0487 NC_010551.1 553060 554343 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: bam:Bamb_0462 cell division protein FtsW; cell division protein FtsW 553060..554343 Burkholderia ambifaria MC40-6 6178519 YP_001807201.1 CDS murG NC_010551.1 554340 555443 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 554340..555443 Burkholderia ambifaria MC40-6 6177795 YP_001807202.1 CDS murC NC_010551.1 555440 556837 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 555440..556837 Burkholderia ambifaria MC40-6 6177887 YP_001807203.1 CDS ddl NC_010551.1 556839 557780 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 556839..557780 Burkholderia ambifaria MC40-6 6177804 YP_001807204.1 CDS BamMC406_0491 NC_010551.1 557800 558552 D PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: bam:Bamb_0466 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 557800..558552 Burkholderia ambifaria MC40-6 6178549 YP_001807205.1 CDS BamMC406_0492 NC_010551.1 558579 559811 D PFAM: cell division protein FtsA; KEGG: bam:Bamb_0467 cell division protein FtsA; cell division protein FtsA 558579..559811 Burkholderia ambifaria MC40-6 6178570 YP_001807206.1 CDS BamMC406_0493 NC_010551.1 560003 561199 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 560003..561199 Burkholderia ambifaria MC40-6 6177288 YP_001807207.1 CDS BamMC406_0494 NC_010551.1 561389 561895 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_0469 redoxin domain protein; redoxin domain-containing protein 561389..561895 Burkholderia ambifaria MC40-6 6177486 YP_001807208.1 CDS lpxC NC_010551.1 562136 563053 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 562136..563053 Burkholderia ambifaria MC40-6 6178142 YP_001807209.1 CDS BamMC406_0496 NC_010551.1 563131 563610 R KEGG: bam:Bamb_0471 hypothetical protein; hypothetical protein complement(563131..563610) Burkholderia ambifaria MC40-6 6177852 YP_001807210.1 CDS BamMC406_0497 NC_010551.1 563878 566673 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 563878..566673 Burkholderia ambifaria MC40-6 6177839 YP_001807211.1 CDS argJ NC_010551.1 566818 568059 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 566818..568059 Burkholderia ambifaria MC40-6 6178470 YP_001807212.1 CDS BamMC406_0499 NC_010551.1 568079 568948 D PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: bam:Bamb_0474 protein of unknown function DUF815; hypothetical protein 568079..568948 Burkholderia ambifaria MC40-6 6177718 YP_001807213.1 CDS BamMC406_0500 NC_010551.1 568945 569403 D PFAM: NUDIX hydrolase; KEGG: bam:Bamb_0475 NUDIX hydrolase; NUDIX hydrolase 568945..569403 Burkholderia ambifaria MC40-6 6177787 YP_001807214.1 CDS BamMC406_0501 NC_010551.1 569464 569664 R PFAM: protein of unknown function DUF329; KEGG: bam:Bamb_0476 protein of unknown function DUF329; hypothetical protein complement(569464..569664) Burkholderia ambifaria MC40-6 6177039 YP_001807215.1 CDS BamMC406_0502 NC_010551.1 569693 570448 R PFAM: protein of unknown function DUF1342; KEGG: bam:Bamb_0477 hypothetical protein; hypothetical protein complement(569693..570448) Burkholderia ambifaria MC40-6 6178280 YP_001807216.1 CDS coaE NC_010551.1 570558 571166 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(570558..571166) Burkholderia ambifaria MC40-6 6176725 YP_001807217.1 CDS BamMC406_0504 NC_010551.1 571251 572162 R PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: bam:Bamb_0479 prepilin peptidase; prepilin peptidase complement(571251..572162) Burkholderia ambifaria MC40-6 6178490 YP_001807218.1 CDS BamMC406_0505 NC_010551.1 572207 573412 R PFAM: type II secretion system protein; KEGG: bam:Bamb_0480 type II secretion system protein; type II secretion system protein complement(572207..573412) Burkholderia ambifaria MC40-6 6177564 YP_001807219.1 CDS BamMC406_0506 NC_010551.1 573418 574662 R PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: bam:Bamb_0481 type II secretion system protein E; type II secretion system protein E complement(573418..574662) Burkholderia ambifaria MC40-6 6177030 YP_001807220.1 CDS BamMC406_0507 NC_010551.1 574778 575980 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bam:Bamb_0482 protein of unknown function DUF21; hypothetical protein complement(574778..575980) Burkholderia ambifaria MC40-6 6177920 YP_001807221.1 CDS BamMC406_0508 NC_010551.1 576440 577435 R PFAM: Polyprenyl synthetase; KEGG: bam:Bamb_0483 trans-hexaprenyltranstransferase; polyprenyl synthetase complement(576440..577435) Burkholderia ambifaria MC40-6 6176822 YP_001807222.1 CDS rplU NC_010551.1 577646 577957 D PFAM: ribosomal protein L21; KEGG: bmu:Bmul_2802 ribosomal protein L21; 50S ribosomal protein L21 577646..577957 Burkholderia ambifaria MC40-6 6177885 YP_001807223.1 CDS rpmA NC_010551.1 577982 578245 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 577982..578245 Burkholderia ambifaria MC40-6 6177864 YP_001807224.1 CDS obgE NC_010551.1 578436 579548 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 578436..579548 Burkholderia ambifaria MC40-6 6176723 YP_001807225.1 CDS BamMC406_0512 NC_010551.1 579639 580757 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 579639..580757 Burkholderia ambifaria MC40-6 6176526 YP_001807226.1 CDS BamMC406_0513 NC_010551.1 580871 581479 R PFAM: Protein of unknown function CNP1-like; KEGG: bam:Bamb_0488 hypothetical protein; hypothetical protein complement(580871..581479) Burkholderia ambifaria MC40-6 6178456 YP_001807227.1 CDS BamMC406_0514 NC_010551.1 581493 582143 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(581493..582143) Burkholderia ambifaria MC40-6 6177896 YP_001807228.1 CDS BamMC406_0515 NC_010551.1 582362 584098 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 582362..584098 Burkholderia ambifaria MC40-6 6178719 YP_001807229.1 CDS BamMC406_0516 NC_010551.1 584120 584722 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: bam:Bamb_0491 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 584120..584722 Burkholderia ambifaria MC40-6 6177713 YP_001807230.1 CDS BamMC406_0517 NC_010551.1 584818 585369 R Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase complement(584818..585369) Burkholderia ambifaria MC40-6 6177900 YP_001807231.1 CDS BamMC406_0518 NC_010551.1 585464 586831 R KEGG: bam:Bamb_0493 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(585464..586831) Burkholderia ambifaria MC40-6 6178575 YP_001807232.1 CDS BamMC406_0519 NC_010551.1 586921 587814 D PFAM: cytochrome c assembly protein; KEGG: bam:Bamb_0494 cytochrome c assembly protein; cytochrome c assembly protein 586921..587814 Burkholderia ambifaria MC40-6 6176709 YP_001807233.1 CDS BamMC406_0520 NC_010551.1 587828 588142 D KEGG: bam:Bamb_0495 hypothetical protein; hypothetical protein 587828..588142 Burkholderia ambifaria MC40-6 6178746 YP_001807234.1 CDS BamMC406_0521 NC_010551.1 588139 588729 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bam:Bamb_0496 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase 588139..588729 Burkholderia ambifaria MC40-6 6177936 YP_001807235.1 CDS BamMC406_0522 NC_010551.1 589195 592194 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 589195..592194 Burkholderia ambifaria MC40-6 6178461 YP_001807236.1 CDS BamMC406_0523 NC_010551.1 592554 593765 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 592554..593765 Burkholderia ambifaria MC40-6 6177108 YP_001807237.1 CDS BamMC406_0524 NC_010551.1 594204 594866 D KEGG: bam:Bamb_0500 hypothetical protein; hypothetical protein 594204..594866 Burkholderia ambifaria MC40-6 6178481 YP_001807238.1 CDS BamMC406_0525 NC_010551.1 595089 595562 R PFAM: 17 kDa surface antigen; KEGG: bam:Bamb_0501 17 kDa surface antigen; 17 kDa surface antigen complement(595089..595562) Burkholderia ambifaria MC40-6 6177872 YP_001807239.1 CDS BamMC406_0526 NC_010551.1 595582 596520 R PFAM: PfkB domain protein; KEGG: bam:Bamb_0502 PfkB domain protein; ribokinase-like domain-containing protein complement(595582..596520) Burkholderia ambifaria MC40-6 6177889 YP_001807240.1 CDS BamMC406_0527 NC_010551.1 596614 597117 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_0503 redoxin domain protein; redoxin domain-containing protein complement(596614..597117) Burkholderia ambifaria MC40-6 6177125 YP_001807241.1 CDS BamMC406_0528 NC_010551.1 597190 598593 R TIGRFAM: MJ0042 family finger-like protein; KEGG: bam:Bamb_0504 MJ0042 family finger-like protein; Zinc finger-domain-containing protein complement(597190..598593) Burkholderia ambifaria MC40-6 6178577 YP_001807242.1 CDS prmA NC_010551.1 598639 599541 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(598639..599541) Burkholderia ambifaria MC40-6 6178610 YP_001807243.1 CDS BamMC406_0530 NC_010551.1 599544 600911 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(599544..600911) Burkholderia ambifaria MC40-6 6178226 YP_001807244.1 CDS BamMC406_0531 NC_010551.1 600997 601473 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(600997..601473) Burkholderia ambifaria MC40-6 6177137 YP_001807245.1 CDS BamMC406_0532 NC_010551.1 601540 601992 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(601540..601992) Burkholderia ambifaria MC40-6 6177888 YP_001807246.1 CDS BamMC406_0533 NC_010551.1 602187 602738 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_0509 redoxin domain protein; redoxin domain-containing protein complement(602187..602738) Burkholderia ambifaria MC40-6 6178865 YP_001807247.1 CDS BamMC406_0534 NC_010551.1 602749 603393 R KEGG: bam:Bamb_0510 hypothetical protein; hypothetical protein complement(602749..603393) Burkholderia ambifaria MC40-6 6178616 YP_001807248.1 CDS BamMC406_0535 NC_010551.1 603617 605002 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: bam:Bamb_0511 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 603617..605002 Burkholderia ambifaria MC40-6 6178099 YP_001807249.1 CDS BamMC406_0536 NC_010551.1 604999 605568 D PFAM: protein of unknown function UPF0227; KEGG: bam:Bamb_0512 protein of unknown function UPF0227; hypothetical protein 604999..605568 Burkholderia ambifaria MC40-6 6178607 YP_001807250.1 CDS BamMC406_0537 NC_010551.1 605650 607740 D PFAM: ribonuclease II; KEGG: bam:Bamb_0513 ribonuclease II; ribonuclease II 605650..607740 Burkholderia ambifaria MC40-6 6177050 YP_001807251.1 CDS aroE NC_010551.1 607737 608603 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 607737..608603 Burkholderia ambifaria MC40-6 6179110 YP_001807252.1 CDS mtgA NC_010551.1 608618 609355 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 608618..609355 Burkholderia ambifaria MC40-6 6177318 YP_001807253.1 CDS BamMC406_0540 NC_010551.1 609790 611400 D PFAM: peptidase S10 serine carboxypeptidase; KEGG: bam:Bamb_0516 peptidase S10, serine carboxypeptidase; peptidase S10 serine carboxypeptidase 609790..611400 Burkholderia ambifaria MC40-6 6177947 YP_001807254.1 CDS BamMC406_0541 NC_010551.1 611485 611889 D KEGG: bam:Bamb_0517 hypothetical protein; hypothetical protein 611485..611889 Burkholderia ambifaria MC40-6 6178620 YP_001807255.1 CDS BamMC406_0542 NC_010551.1 612226 613125 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_0518 transcriptional regulator, IclR family; IclR family transcriptional regulator 612226..613125 Burkholderia ambifaria MC40-6 6178573 YP_001807256.1 CDS BamMC406_0543 NC_010551.1 613122 614147 D PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: bam:Bamb_0519 2-keto-3-deoxy-galactonokinase; 2-keto-3-deoxy-galactonokinase 613122..614147 Burkholderia ambifaria MC40-6 6177946 YP_001807257.1 CDS BamMC406_0544 NC_010551.1 614170 614847 D catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 614170..614847 Burkholderia ambifaria MC40-6 6178630 YP_001807258.1 CDS BamMC406_0545 NC_010551.1 614847 615626 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_0521 short chain dehydrogenase; short chain dehydrogenase 614847..615626 Burkholderia ambifaria MC40-6 6176541 YP_001807259.1 CDS BamMC406_0546 NC_010551.1 615729 616724 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_0522 periplasmic binding protein/LacI transcriptional regulator; monosaccharide-transporting ATPase 615729..616724 Burkholderia ambifaria MC40-6 6177809 YP_001807260.1 CDS araG NC_010551.1 616793 618304 D Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter ATP-binding protein 616793..618304 Burkholderia ambifaria MC40-6 6176502 YP_001807261.1 CDS araH NC_010551.1 618395 619411 D Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter permease 618395..619411 Burkholderia ambifaria MC40-6 6177873 YP_001807262.1 CDS BamMC406_0549 NC_010551.1 619435 620247 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_0525 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 619435..620247 Burkholderia ambifaria MC40-6 6176088 YP_001807263.1 CDS BamMC406_0550 NC_010551.1 620614 621675 D PFAM: Aldose 1-epimerase; KEGG: bam:Bamb_0526 aldose 1-epimerase; aldose 1-epimerase 620614..621675 Burkholderia ambifaria MC40-6 6177951 YP_001807264.1 CDS pyrF NC_010551.1 621715 622542 D type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 621715..622542 Burkholderia ambifaria MC40-6 6177673 YP_001807265.1 CDS BamMC406_0552 NC_010551.1 622762 623820 D KEGG: bam:Bamb_0528 hypothetical protein; hypothetical protein 622762..623820 Burkholderia ambifaria MC40-6 6178659 YP_001807266.1 CDS BamMC406_0553 NC_010551.1 623885 624385 R PFAM: CinA domain protein; KEGG: bam:Bamb_0529 CinA domain protein; CinA domain-containing protein complement(623885..624385) Burkholderia ambifaria MC40-6 6176778 YP_001807267.1 CDS BamMC406_0554 NC_010551.1 624418 624963 R PFAM: phosphatidylglycerophosphatase A; KEGG: bam:Bamb_0530 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A complement(624418..624963) Burkholderia ambifaria MC40-6 6176460 YP_001807268.1 CDS BamMC406_0555 NC_010551.1 624953 625987 R catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase complement(624953..625987) Burkholderia ambifaria MC40-6 6178509 YP_001807269.1 CDS BamMC406_0556 NC_010551.1 626088 628430 D NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 626088..628430 Burkholderia ambifaria MC40-6 6178522 YP_001807270.1 CDS BamMC406_0557 NC_010551.1 628808 629239 D PFAM: guanine-specific ribonuclease N1 and T1; KEGG: bam:Bamb_0533 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease N1 and T1 628808..629239 Burkholderia ambifaria MC40-6 6178706 YP_001807271.1 CDS BamMC406_0558 NC_010551.1 629256 629819 D KEGG: bam:Bamb_0534 hypothetical protein; hypothetical protein 629256..629819 Burkholderia ambifaria MC40-6 6178814 YP_001807272.2 CDS BamMC406_0559 NC_010551.1 630078 630845 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(630078..630845) Burkholderia ambifaria MC40-6 6177976 YP_001807273.1 CDS BamMC406_0560 NC_010551.1 630863 631279 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_0536 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(630863..631279) Burkholderia ambifaria MC40-6 6177957 YP_001807274.1 CDS BamMC406_0561 NC_010551.1 631471 632328 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(631471..632328) Burkholderia ambifaria MC40-6 6178631 YP_001807275.1 CDS BamMC406_0562 NC_010551.1 632544 634616 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 632544..634616 Burkholderia ambifaria MC40-6 6177740 YP_001807276.1 CDS BamMC406_0563 NC_010551.1 634705 635715 D KEGG: bam:Bamb_0539 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 634705..635715 Burkholderia ambifaria MC40-6 6176716 YP_001807277.1 CDS BamMC406_0564 NC_010551.1 635815 636651 R PFAM: Integrase catalytic region; KEGG: rme:Rmet_1564 integrase, catalytic region; integrase catalytic subunit complement(635815..636651) Burkholderia ambifaria MC40-6 6178103 YP_001807278.1 CDS BamMC406_0565 NC_010551.1 636639 637175 R PFAM: transposase IS3/IS911 family protein; KEGG: sme:SMb20826 putative protein, probably encoded by an unidentifed IS element; transposase IS3/IS911 family protein complement(636639..637175) Burkholderia ambifaria MC40-6 6178783 YP_001807279.1 CDS BamMC406_0566 NC_010551.1 637246 637965 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_0540 GntR domain protein; GntR family transcriptional regulator complement(637246..637965) Burkholderia ambifaria MC40-6 6177007 YP_001807280.1 CDS BamMC406_0567 NC_010551.1 638211 639533 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 638211..639533 Burkholderia ambifaria MC40-6 6178102 YP_001807281.1 CDS BamMC406_0568 NC_010551.1 639640 640647 D catalyzes the formation of S-ureidoglycolate and urea from allantoate; allantoicase 639640..640647 Burkholderia ambifaria MC40-6 6176604 YP_001807282.1 CDS BamMC406_0569 NC_010551.1 640662 641186 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 640662..641186 Burkholderia ambifaria MC40-6 6177838 YP_001807283.1 CDS BamMC406_0570 NC_010551.1 641386 641814 R PFAM: ferric-uptake regulator; KEGG: bam:Bamb_0544 ferric uptake regulator, Fur family; ferric uptake regulator family protein complement(641386..641814) Burkholderia ambifaria MC40-6 6178322 YP_001807284.1 CDS BamMC406_0571 NC_010551.1 641956 642753 D PFAM: SmpA/OmlA domain protein; KEGG: bam:Bamb_0545 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 641956..642753 Burkholderia ambifaria MC40-6 6176923 YP_001807285.1 CDS BamMC406_0572 NC_010551.1 642819 643616 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 642819..643616 Burkholderia ambifaria MC40-6 6178722 YP_001807286.1 CDS BamMC406_0573 NC_010551.1 643636 644304 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: bam:Bamb_0547 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 643636..644304 Burkholderia ambifaria MC40-6 6176817 YP_001807287.1 CDS BamMC406_0574 NC_010551.1 644327 644782 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bam:Bamb_0548 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 644327..644782 Burkholderia ambifaria MC40-6 6176894 YP_001807288.1 CDS leuS NC_010551.1 645063 647657 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 645063..647657 Burkholderia ambifaria MC40-6 6178070 YP_001807289.1 CDS BamMC406_0576 NC_010551.1 647696 648247 D PFAM: Rare lipoprotein B; KEGG: bam:Bamb_0550 rare lipoprotein B; rare lipoprotein B 647696..648247 Burkholderia ambifaria MC40-6 6178003 YP_001807290.1 CDS holA NC_010551.1 648266 649360 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 648266..649360 Burkholderia ambifaria MC40-6 6177963 YP_001807291.1 CDS proA NC_010551.1 649494 650765 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 649494..650765 Burkholderia ambifaria MC40-6 6178720 YP_001807292.1 CDS BamMC406_0579 NC_010551.1 650783 651205 D PFAM: conserved hypothetical protein; KEGG: bam:Bamb_0553 conserved hypothetical protein 701; hypothetical protein 650783..651205 Burkholderia ambifaria MC40-6 6176828 YP_001807293.1 CDS BamMC406_0580 NC_010551.1 651310 652158 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bam:Bamb_0554 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(651310..652158) Burkholderia ambifaria MC40-6 6177270 YP_001807294.1 CDS BamMC406_0581 NC_010551.1 652452 654308 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 652452..654308 Burkholderia ambifaria MC40-6 6178808 YP_001807295.1 CDS BamMC406_0582 NC_010551.1 654328 654954 D KEGG: bam:Bamb_0556 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 654328..654954 Burkholderia ambifaria MC40-6 6178011 YP_001807296.1 CDS BamMC406_0583 NC_010551.1 655172 656533 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: bam:Bamb_0557 gluconate transporter; gluconate transporter 655172..656533 Burkholderia ambifaria MC40-6 6178730 YP_001807297.1 CDS BamMC406_0584 NC_010551.1 656548 657051 D KEGG: bam:Bamb_0558 carbohydrate kinase, thermoresistant glucokinase family; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; carbohydrate kinase 656548..657051 Burkholderia ambifaria MC40-6 6176680 YP_001807298.1 CDS BamMC406_0585 NC_010551.1 657121 657768 R PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bam:Bamb_0559 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(657121..657768) Burkholderia ambifaria MC40-6 6178018 YP_001807299.1 CDS BamMC406_0586 NC_010551.1 658036 659457 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_0560 FAD dependent oxidoreductase; FAD dependent oxidoreductase 658036..659457 Burkholderia ambifaria MC40-6 6177290 YP_001807300.1 CDS BamMC406_0587 NC_010551.1 659560 660948 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(659560..660948) Burkholderia ambifaria MC40-6 6177130 YP_001807301.1 CDS BamMC406_0588 NC_010551.1 661261 662214 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0562 transcriptional regulator, LysR family; LysR family transcriptional regulator 661261..662214 Burkholderia ambifaria MC40-6 6178424 YP_001807302.1 CDS BamMC406_0589 NC_010551.1 662481 663767 D PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: bam:Bamb_0563 Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase 662481..663767 Burkholderia ambifaria MC40-6 6177974 YP_001807303.1 CDS BamMC406_0590 NC_010551.1 664032 664925 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_0564 extracellular solute-binding protein, family 3; extracellular solute-binding protein 664032..664925 Burkholderia ambifaria MC40-6 6178076 YP_001807304.1 CDS BamMC406_0591 NC_010551.1 665010 665750 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_0565 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 665010..665750 Burkholderia ambifaria MC40-6 6178806 YP_001807305.1 CDS BamMC406_0592 NC_010551.1 665750 666427 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_0566 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 665750..666427 Burkholderia ambifaria MC40-6 6178565 YP_001807306.1 CDS BamMC406_0593 NC_010551.1 666424 667149 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_0567 ABC transporter related; ABC transporter-like protein 666424..667149 Burkholderia ambifaria MC40-6 6178835 YP_001807307.1 CDS BamMC406_0594 NC_010551.1 667254 672566 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: bam:Bamb_0568 outer membrane autotransporter barrel domain; outer membrane autotransporter complement(667254..672566) Burkholderia ambifaria MC40-6 6178294 YP_001807308.1 CDS BamMC406_0595 NC_010551.1 673167 674066 R PFAM: glutamine amidotransferase class-II; KEGG: bam:Bamb_0569 glutamine amidotransferase, class-II; glutamine amidotransferase complement(673167..674066) Burkholderia ambifaria MC40-6 6177744 YP_001807309.1 CDS BamMC406_0596 NC_010551.1 674257 675351 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 674257..675351 Burkholderia ambifaria MC40-6 6178756 YP_001807310.1 CDS BamMC406_0597 NC_010551.1 675874 676296 R PFAM: OsmC family protein; KEGG: bam:Bamb_0571 OsmC family protein; OsmC family protein complement(675874..676296) Burkholderia ambifaria MC40-6 6176668 YP_001807311.1 CDS BamMC406_0598 NC_010551.1 676774 677079 R KEGG: bam:Bamb_0572 hypothetical protein; hypothetical protein complement(676774..677079) Burkholderia ambifaria MC40-6 6176642 YP_001807312.2 CDS rplM NC_010551.1 677392 677820 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 677392..677820 Burkholderia ambifaria MC40-6 6178819 YP_001807313.1 CDS rpsI NC_010551.1 677832 678224 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 677832..678224 Burkholderia ambifaria MC40-6 6178802 YP_001807314.1 CDS BamMC406_0601 NC_010551.1 678429 678800 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 678429..678800 Burkholderia ambifaria MC40-6 6176564 YP_001807315.1 CDS anmK NC_010551.1 678909 680057 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(678909..680057) Burkholderia ambifaria MC40-6 6178210 YP_001807316.1 CDS BamMC406_0603 NC_010551.1 680200 681441 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 680200..681441 Burkholderia ambifaria MC40-6 6178773 YP_001807317.1 CDS BamMC406_0604 NC_010551.1 681438 681896 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 681438..681896 Burkholderia ambifaria MC40-6 6178597 YP_001807318.1 CDS BamMC406_0605 NC_010551.1 681920 682582 D PFAM: Phosphoglycerate mutase; KEGG: bam:Bamb_0579 phosphoglycerate mutase; phosphoglycerate mutase 681920..682582 Burkholderia ambifaria MC40-6 6177926 YP_001807319.1 CDS BamMC406_0606 NC_010551.1 682720 683664 R KEGG: bam:Bamb_0580 hypothetical protein; hypothetical protein complement(682720..683664) Burkholderia ambifaria MC40-6 6178750 YP_001807320.1 CDS ruvB NC_010551.1 683688 684752 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(683688..684752) Burkholderia ambifaria MC40-6 6177853 YP_001807321.1 CDS ruvA NC_010551.1 684873 685454 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(684873..685454) Burkholderia ambifaria MC40-6 6176650 YP_001807322.1 CDS ruvC NC_010551.1 685616 686167 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(685616..686167) Burkholderia ambifaria MC40-6 6178020 YP_001807323.1 CDS purH NC_010551.1 686319 687884 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(686319..687884) Burkholderia ambifaria MC40-6 6177943 YP_001807324.1 CDS BamMC406_0611 NC_010551.1 687930 688163 R PFAM: helix-turn-helix Fis-type; KEGG: bam:Bamb_0585 DNA-binding protein fis; DNA-binding protein Fis complement(687930..688163) Burkholderia ambifaria MC40-6 6178733 YP_001807325.1 CDS BamMC406_0612 NC_010551.1 688160 689227 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: bam:Bamb_0586 putative TIM-barrel protein, nifR3 family; NifR3 family TIM-barrel protein complement(688160..689227) Burkholderia ambifaria MC40-6 6177741 YP_001807326.1 CDS BamMC406_0613 NC_010551.1 689387 690565 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bam:Bamb_0587 hypothetical protein; hypothetical protein complement(689387..690565) Burkholderia ambifaria MC40-6 6177011 YP_001807327.1 CDS BamMC406_0614 NC_010551.1 690634 692028 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: bam:Bamb_0588 peptidase M24; peptidase M24 complement(690634..692028) Burkholderia ambifaria MC40-6 6177049 YP_001807328.1 CDS BamMC406_0615 NC_010551.1 692217 692828 D PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_0589 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 692217..692828 Burkholderia ambifaria MC40-6 6178811 YP_001807329.1 CDS BamMC406_0616 NC_010551.1 692933 694552 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: bam:Bamb_0590 glutamate synthase (NADPH); glutamate synthase complement(692933..694552) Burkholderia ambifaria MC40-6 6178007 YP_001807330.1 CDS mnmA NC_010551.1 694665 695834 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(694665..695834) Burkholderia ambifaria MC40-6 6178164 YP_001807331.1 CDS BamMC406_0618 NC_010551.1 695831 696340 R PFAM: NUDIX hydrolase; KEGG: bam:Bamb_0592 NUDIX hydrolase; NUDIX hydrolase complement(695831..696340) Burkholderia ambifaria MC40-6 6177857 YP_001807332.1 CDS BamMC406_0619 NC_010551.1 696628 697548 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0594 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(696628..697548) Burkholderia ambifaria MC40-6 6178040 YP_001807333.1 CDS BamMC406_0620 NC_010551.1 697630 698553 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bam:Bamb_0595 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 697630..698553 Burkholderia ambifaria MC40-6 6176439 YP_001807334.1 CDS BamMC406_0621 NC_010551.1 698639 699325 R PFAM: Helix-turn-helix type 11 domain protein; KEGG: bam:Bamb_0596 helix-turn-helix, type 11 domain protein; helix-turn-helix type 11 domain-containing protein complement(698639..699325) Burkholderia ambifaria MC40-6 6178915 YP_001807335.1 CDS BamMC406_0622 NC_010551.1 699399 699809 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_0597 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(699399..699809) Burkholderia ambifaria MC40-6 6176731 YP_001807336.1 CDS BamMC406_0623 NC_010551.1 700105 701403 R PFAM: putative RNA methylase; THUMP domain protein; KEGG: bam:Bamb_0598 putative RNA methylase; putative RNA methylase complement(700105..701403) Burkholderia ambifaria MC40-6 6178074 YP_001807337.1 CDS BamMC406_0624 NC_010551.1 701567 703690 R KEGG: bam:Bamb_0599 site-specific recombinase-like protein; site-specific recombinase-like protein complement(701567..703690) Burkholderia ambifaria MC40-6 6178794 YP_001807338.1 CDS BamMC406_0625 NC_010551.1 704189 704911 R PFAM: protein of unknown function DUF330; KEGG: bam:Bamb_0601 protein of unknown function DUF330; hypothetical protein complement(704189..704911) Burkholderia ambifaria MC40-6 6178818 YP_001807339.1 CDS BamMC406_0626 NC_010551.1 704908 706527 R PFAM: Mammalian cell entry related domain protein; KEGG: bam:Bamb_0602 mammalian cell entry related domain protein; hypothetical protein complement(704908..706527) Burkholderia ambifaria MC40-6 6178081 YP_001807340.1 CDS BamMC406_0627 NC_010551.1 706520 707149 R PFAM: Paraquat-inducible protein A; KEGG: bam:Bamb_0603 paraquat-inducible protein A; paraquat-inducible protein A complement(706520..707149) Burkholderia ambifaria MC40-6 6176763 YP_001807341.1 CDS BamMC406_0628 NC_010551.1 707146 707808 R PFAM: Paraquat-inducible protein A; KEGG: bam:Bamb_0604 paraquat-inducible protein A; paraquat-inducible protein A complement(707146..707808) Burkholderia ambifaria MC40-6 6176599 YP_001807342.1 CDS BamMC406_0629 NC_010551.1 708067 708627 D PFAM: cytochrome B561; KEGG: bam:Bamb_0605 cytochrome b561; cytochrome B561 708067..708627 Burkholderia ambifaria MC40-6 6178162 YP_001807343.1 CDS BamMC406_0630 NC_010551.1 708636 709196 D PFAM: YceI family protein; KEGG: bam:Bamb_0606 YceI family protein; hypothetical protein 708636..709196 Burkholderia ambifaria MC40-6 6178033 YP_001807344.1 CDS BamMC406_0631 NC_010551.1 709262 709843 D PFAM: YceI family protein; KEGG: bam:Bamb_0607 YceI family protein; hypothetical protein 709262..709843 Burkholderia ambifaria MC40-6 6178742 YP_001807345.1 CDS BamMC406_0632 NC_010551.1 709997 711274 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_0608 major facilitator superfamily MFS_1; major facilitator transporter 709997..711274 Burkholderia ambifaria MC40-6 6176895 YP_001807346.1 CDS BamMC406_0633 NC_010551.1 711518 712258 D PFAM: Peptidoglycan-binding LysM; KEGG: aav:Aave_0037 peptidoglycan-binding LysM; peptidoglycan-binding LysM 711518..712258 Burkholderia ambifaria MC40-6 6177991 YP_001807347.1 CDS secF NC_010551.1 712847 713797 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(712847..713797) Burkholderia ambifaria MC40-6 6178034 YP_001807348.1 CDS secD NC_010551.1 713816 715837 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(713816..715837) Burkholderia ambifaria MC40-6 6177212 YP_001807349.1 CDS yajC NC_010551.1 715956 716279 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(715956..716279) Burkholderia ambifaria MC40-6 6177415 YP_001807350.1 CDS tgt NC_010551.1 716526 717713 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(716526..717713) Burkholderia ambifaria MC40-6 6178859 YP_001807351.1 CDS queA NC_010551.1 717874 718941 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(717874..718941) Burkholderia ambifaria MC40-6 6176522 YP_001807352.1 CDS BamMC406_0639 NC_010551.1 719109 721487 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 719109..721487 Burkholderia ambifaria MC40-6 6178612 YP_001807353.1 CDS BamMC406_0640 NC_010551.1 721624 722583 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_0725 transcriptional regulator, LysR family; LysR family transcriptional regulator 721624..722583 Burkholderia ambifaria MC40-6 6177862 YP_001807354.1 CDS BamMC406_0641 NC_010551.1 722770 722907 D hypothetical protein 722770..722907 Burkholderia ambifaria MC40-6 6176857 YP_001807355.1 CDS BamMC406_0642 NC_010551.1 723017 725203 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: bam:Bamb_0616 catalase/peroxidase HPI; catalase/peroxidase HPI 723017..725203 Burkholderia ambifaria MC40-6 6178921 YP_001807356.1 CDS BamMC406_0643 NC_010551.1 725308 725481 D KEGG: bam:Bamb_0617 hypothetical protein; hypothetical protein 725308..725481 Burkholderia ambifaria MC40-6 6179006 YP_001807357.1 CDS BamMC406_0644 NC_010551.1 725601 726089 D PFAM: Ferritin Dps family protein; KEGG: bam:Bamb_0618 ferritin, Dps family protein; ferritin Dps family protein 725601..726089 Burkholderia ambifaria MC40-6 6177993 YP_001807358.1 CDS ubiA NC_010551.1 726369 727241 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 726369..727241 Burkholderia ambifaria MC40-6 6177139 YP_001807359.1 CDS BamMC406_0646 NC_010551.1 727335 728147 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(727335..728147) Burkholderia ambifaria MC40-6 6178073 YP_001807360.1 CDS BamMC406_0647 NC_010551.1 728198 728896 R PFAM: alanine racemase domain protein; KEGG: bam:Bamb_0621 protein of unknown function UPF0001; alanine racemase domain-containing protein complement(728198..728896) Burkholderia ambifaria MC40-6 6178836 YP_001807361.1 CDS glcF NC_010551.1 729031 730257 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bam:Bamb_0622 glycolate oxidase iron-sulfur subunit; glycolate oxidase iron-sulfur subunit complement(729031..730257) Burkholderia ambifaria MC40-6 6178013 YP_001807362.1 CDS glcE NC_010551.1 730543 731631 R PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_0623 glycolate oxidase FAD binding subunit; glycolate oxidase FAD binding subunit complement(730543..731631) Burkholderia ambifaria MC40-6 6176624 YP_001807363.1 CDS BamMC406_0650 NC_010551.1 731802 733295 R PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_0624 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(731802..733295) Burkholderia ambifaria MC40-6 6178846 YP_001807364.1 CDS BamMC406_0651 NC_010551.1 733333 734742 R PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_0625 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(733333..734742) Burkholderia ambifaria MC40-6 6177855 YP_001807365.1 CDS BamMC406_0652 NC_010551.1 734882 735433 D TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: bam:Bamb_0626 ATP--cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase 734882..735433 Burkholderia ambifaria MC40-6 6178091 YP_001807366.1 CDS BamMC406_0653 NC_010551.1 735528 736736 D PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_0627 globin; oxidoreductase FAD/NAD(P)-binding subunit 735528..736736 Burkholderia ambifaria MC40-6 6178661 YP_001807367.1 CDS BamMC406_0655 NC_010551.1 737200 737469 R TIGRFAM: prevent-host-death family protein; KEGG: bam:Bamb_0629 prevent-host-death family protein; prevent-host-death family protein complement(737200..737469) Burkholderia ambifaria MC40-6 6176987 YP_001807368.1 CDS BamMC406_0656 NC_010551.1 737593 738666 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(737593..738666) Burkholderia ambifaria MC40-6 6176101 YP_001807369.1 CDS BamMC406_0657 NC_010551.1 739113 740579 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bam:Bamb_0632 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(739113..740579) Burkholderia ambifaria MC40-6 6176482 YP_001807370.1 CDS BamMC406_0658 NC_010551.1 740673 741500 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bam:Bamb_0633 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(740673..741500) Burkholderia ambifaria MC40-6 6177119 YP_001807371.1 CDS BamMC406_0659 NC_010551.1 741552 745748 R KEGG: bam:Bamb_0634 hypothetical protein; hypothetical protein complement(741552..745748) Burkholderia ambifaria MC40-6 6177043 YP_001807372.1 CDS BamMC406_0660 NC_010551.1 745835 748777 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 745835..748777 Burkholderia ambifaria MC40-6 6178759 YP_001807373.1 CDS BamMC406_0661 NC_010551.1 748893 750542 R KEGG: bam:Bamb_0637 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase; DNA repair protein RecN complement(748893..750542) Burkholderia ambifaria MC40-6 6178243 YP_001807374.1 CDS ppnK NC_010551.1 750562 751464 R catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein complement(750562..751464) Burkholderia ambifaria MC40-6 6178868 YP_001807375.1 CDS hrcA NC_010551.1 751595 752617 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 751595..752617 Burkholderia ambifaria MC40-6 6177157 YP_001807376.1 CDS hemH NC_010551.1 752755 753819 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 752755..753819 Burkholderia ambifaria MC40-6 6178028 YP_001807377.1 CDS BamMC406_0665 NC_010551.1 753915 754322 D PFAM: RNA-binding S4 domain protein; KEGG: bam:Bamb_0641 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 753915..754322 Burkholderia ambifaria MC40-6 6178144 YP_001807378.1 CDS BamMC406_0666 NC_010551.1 754294 754455 R KEGG: bam:Bamb_0642 hypothetical protein; hypothetical protein complement(754294..754455) Burkholderia ambifaria MC40-6 6178938 YP_001807379.1 CDS BamMC406_0667 NC_010551.1 754809 755354 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 754809..755354 Burkholderia ambifaria MC40-6 6178821 YP_001807380.1 CDS BamMC406_0668 NC_010551.1 755365 755805 D KEGG: bam:Bamb_0645 hypothetical protein; hypothetical protein 755365..755805 Burkholderia ambifaria MC40-6 6178890 YP_001807381.1 CDS dnaK NC_010551.1 755952 757904 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 755952..757904 Burkholderia ambifaria MC40-6 6176812 YP_001807382.1 CDS BamMC406_0670 NC_010551.1 758158 759294 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 758158..759294 Burkholderia ambifaria MC40-6 6177989 YP_001807383.1 CDS BamMC406_0671 NC_010551.1 759299 761245 D PFAM: Chorismate binding-like; KEGG: bam:Bamb_0648 anthranilate synthase component I and chorismate binding protein; chorismate binding-like protein 759299..761245 Burkholderia ambifaria MC40-6 6178810 YP_001807384.1 CDS BamMC406_0672 NC_010551.1 761361 761813 R KEGG: aav:Aave_2421 hypothetical protein; hypothetical protein complement(761361..761813) Burkholderia ambifaria MC40-6 6178265 YP_001807385.1 CDS BamMC406_0673 NC_010551.1 761816 762196 R KEGG: aav:Aave_2422 hypothetical protein; hypothetical protein complement(761816..762196) Burkholderia ambifaria MC40-6 6178753 YP_001807386.1 CDS panB NC_010551.1 762354 763169 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(762354..763169) Burkholderia ambifaria MC40-6 6177112 YP_001807387.1 CDS BamMC406_0675 NC_010551.1 763212 763898 R PFAM: deoxynucleoside kinase; KEGG: bam:Bamb_0650 deoxynucleoside kinase; deoxynucleoside kinase complement(763212..763898) Burkholderia ambifaria MC40-6 6176643 YP_001807388.1 CDS BamMC406_0676 NC_010551.1 763895 764437 R KEGG: bam:Bamb_0651 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(763895..764437) Burkholderia ambifaria MC40-6 6177799 YP_001807389.1 CDS BamMC406_0677 NC_010551.1 764473 766011 R KEGG: bur:Bcep18194_A3845 poly(A) polymerase, PcnB; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase complement(764473..766011) Burkholderia ambifaria MC40-6 6178933 YP_001807390.1 CDS BamMC406_0678 NC_010551.1 766017 766694 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: bam:Bamb_0653 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD family hydrolase complement(766017..766694) Burkholderia ambifaria MC40-6 6178163 YP_001807391.1 CDS BamMC406_0679 NC_010551.1 766706 767662 R TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: bam:Bamb_0654 hypothetical protein; DnaA regulatory inactivator Hda complement(766706..767662) Burkholderia ambifaria MC40-6 6178822 YP_001807392.1 CDS BamMC406_0680 NC_010551.1 767688 768743 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 767688..768743 Burkholderia ambifaria MC40-6 6178150 YP_001807393.1 CDS BamMC406_0681 NC_010551.1 768851 769246 D KEGG: bam:Bamb_0656 hypothetical protein; hypothetical protein 768851..769246 Burkholderia ambifaria MC40-6 6177505 YP_001807394.1 CDS BamMC406_0682 NC_010551.1 769286 770479 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0657 major facilitator superfamily MFS_1; major facilitator transporter complement(769286..770479) Burkholderia ambifaria MC40-6 6178127 YP_001807395.1 CDS BamMC406_0683 NC_010551.1 770543 771178 D PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bam:Bamb_0658 transcriptional regulator, TetR family; TetR family transcriptional regulator 770543..771178 Burkholderia ambifaria MC40-6 6178029 YP_001807396.1 CDS miaA NC_010551.1 771197 772171 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(771197..772171) Burkholderia ambifaria MC40-6 6178214 YP_001807397.1 CDS mutL NC_010551.1 772168 774153 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(772168..774153) Burkholderia ambifaria MC40-6 6178184 YP_001807398.1 CDS BamMC406_0686 NC_010551.1 774237 775010 D PFAM: SNARE associated Golgi protein; KEGG: bam:Bamb_0661 putative DedA family transmembrane protein; hypothetical protein 774237..775010 Burkholderia ambifaria MC40-6 6178823 YP_001807399.1 CDS BamMC406_0687 NC_010551.1 775079 775891 R PFAM: MscS Mechanosensitive ion channel; KEGG: bam:Bamb_0662 MscS mechanosensitive ion channel; MscS mechanosensitive ion channel complement(775079..775891) Burkholderia ambifaria MC40-6 6178141 YP_001807400.1 CDS BamMC406_0688 NC_010551.1 776230 777063 R PFAM: glutamine amidotransferase class-II; KEGG: bam:Bamb_0665 glutamine amidotransferase, class-II; glutamine amidotransferase complement(776230..777063) Burkholderia ambifaria MC40-6 6176741 YP_001807401.1 CDS BamMC406_0689 NC_010551.1 777259 777588 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_0666 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase complement(777259..777588) Burkholderia ambifaria MC40-6 6177754 YP_001807402.1 CDS BamMC406_0690 NC_010551.1 777719 778669 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_0667 transcriptional regulator, AraC family; AraC family transcriptional regulator 777719..778669 Burkholderia ambifaria MC40-6 6176758 YP_001807403.1 CDS BamMC406_0691 NC_010551.1 778781 779224 D PFAM: YiaAB two helix domain protein; KEGG: bam:Bamb_0668 YiaAB two helix domain protein; YiaAB two helix domain-containing protein 778781..779224 Burkholderia ambifaria MC40-6 6178241 YP_001807404.1 CDS BamMC406_0692 NC_010551.1 779613 780362 R TIGRFAM: tol-pal system protein YbgF; KEGG: bvi:Bcep1808_0730 hypothetical protein; tol-pal system protein YbgF complement(779613..780362) Burkholderia ambifaria MC40-6 6178863 YP_001807405.1 CDS BamMC406_0693 NC_010551.1 780382 780891 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_0676 OmpA/MotB domain protein; peptidoglycan-associated lipoprotein complement(780382..780891) Burkholderia ambifaria MC40-6 6178220 YP_001807406.1 CDS tolB NC_010551.1 780909 782204 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(780909..782204) Burkholderia ambifaria MC40-6 6178137 YP_001807407.1 CDS BamMC406_0695 NC_010551.1 782313 783380 R TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: bam:Bamb_0678 TolA family protein; protein TolA complement(782313..783380) Burkholderia ambifaria MC40-6 6178015 YP_001807408.1 CDS BamMC406_0696 NC_010551.1 783377 783826 R TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bam:Bamb_0679 biopolymer transport protein ExbD/TolR; protein TolR complement(783377..783826) Burkholderia ambifaria MC40-6 6178761 YP_001807409.1 CDS BamMC406_0697 NC_010551.1 783837 784514 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bam:Bamb_0680 MotA/TolQ/ExbB proton channel; protein TolQ complement(783837..784514) Burkholderia ambifaria MC40-6 6178987 YP_001807410.1 CDS BamMC406_0698 NC_010551.1 784659 785144 R TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_0681 4-hydroxybenzoyl-CoA thioesterase; tol-pal system-associated acyl-CoA thioesterase complement(784659..785144) Burkholderia ambifaria MC40-6 6178772 YP_001807411.1 CDS BamMC406_0699 NC_010551.1 785254 786000 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_0682 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(785254..786000) Burkholderia ambifaria MC40-6 6178227 YP_001807412.1 CDS glyA NC_010551.1 786371 787666 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 786371..787666 Burkholderia ambifaria MC40-6 6178770 YP_001807413.1 CDS nrdR NC_010551.1 787673 788152 D PFAM: ATP-cone domain protein; KEGG: bam:Bamb_0684 hypothetical protein; transcriptional regulator NrdR 787673..788152 Burkholderia ambifaria MC40-6 6177354 YP_001807414.1 CDS BamMC406_0702 NC_010551.1 788306 788866 D KEGG: bam:Bamb_0685 Tfp pilus assembly protein FimT-like protein; Tfp pilus assembly protein FimT-like protein 788306..788866 Burkholderia ambifaria MC40-6 6178918 YP_001807415.1 CDS BamMC406_0703 NC_010551.1 788863 789279 D KEGG: bam:Bamb_0686 hypothetical protein; hypothetical protein 788863..789279 Burkholderia ambifaria MC40-6 6177451 YP_001807416.1 CDS BamMC406_0704 NC_010551.1 789263 790102 D KEGG: bam:Bamb_0687 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein 789263..790102 Burkholderia ambifaria MC40-6 6178195 YP_001807417.1 CDS BamMC406_0705 NC_010551.1 790209 790757 D KEGG: bam:Bamb_0688 hypothetical protein; hypothetical protein 790209..790757 Burkholderia ambifaria MC40-6 6176885 YP_001807418.1 CDS BamMC406_0706 NC_010551.1 790754 791209 D KEGG: bam:Bamb_0689 putative Tfp pilus assembly protein PilE; putative Tfp pilus assembly protein PilE 790754..791209 Burkholderia ambifaria MC40-6 6178881 YP_001807419.1 CDS BamMC406_0707 NC_010551.1 791283 791726 R KEGG: bam:Bamb_0690 hypothetical protein; hypothetical protein complement(791283..791726) Burkholderia ambifaria MC40-6 6178897 YP_001807420.1 CDS BamMC406_0708 NC_010551.1 791770 792159 R KEGG: bam:Bamb_0691 membrane protein; membrane protein complement(791770..792159) Burkholderia ambifaria MC40-6 6178256 YP_001807421.1 CDS BamMC406_0709 NC_010551.1 792283 792585 R PFAM: protein of unknown function DUF883 ElaB; KEGG: bam:Bamb_0692 protein of unknown function DUF883, ElaB; hypothetical protein complement(792283..792585) Burkholderia ambifaria MC40-6 6177711 YP_001807422.1 CDS BamMC406_0710 NC_010551.1 792901 793539 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_0693 peroxidase; peroxidase 792901..793539 Burkholderia ambifaria MC40-6 6178223 YP_001807423.1 CDS BamMC406_0711 NC_010551.1 793660 794847 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_0694 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(793660..794847) Burkholderia ambifaria MC40-6 6176925 YP_001807424.1 CDS BamMC406_0712 NC_010551.1 795060 795851 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_0695 transcriptional regulator, IclR family; IclR family transcriptional regulator 795060..795851 Burkholderia ambifaria MC40-6 6178213 YP_001807425.1 CDS BamMC406_0713 NC_010551.1 796063 796866 R PFAM: EAL domain protein; KEGG: bam:Bamb_0697 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(796063..796866) Burkholderia ambifaria MC40-6 6178263 YP_001807426.1 CDS BamMC406_0714 NC_010551.1 797131 797232 D hypothetical protein 797131..797232 Burkholderia ambifaria MC40-6 6178080 YP_001807427.1 CDS BamMC406_0715 NC_010551.1 797240 798916 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bam:Bamb_0698 hypothetical protein; FAD-dependent oxidoreductase 797240..798916 Burkholderia ambifaria MC40-6 6179003 YP_001807428.1 CDS BamMC406_0716 NC_010551.1 798963 799193 D KEGG: bam:Bamb_0699 hypothetical protein; hypothetical protein 798963..799193 Burkholderia ambifaria MC40-6 6177778 YP_001807429.1 CDS BamMC406_0717 NC_010551.1 799190 800551 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_0700 major facilitator superfamily MFS_1; major facilitator transporter 799190..800551 Burkholderia ambifaria MC40-6 6178257 YP_001807430.1 CDS BamMC406_0718 NC_010551.1 800567 801901 D An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 800567..801901 Burkholderia ambifaria MC40-6 6178972 YP_001807431.1 CDS BamMC406_0719 NC_010551.1 801898 803202 D KEGG: bam:Bamb_0702 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase 801898..803202 Burkholderia ambifaria MC40-6 6178039 YP_001807432.1 CDS BamMC406_0720 NC_010551.1 803341 804501 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0703 major facilitator superfamily MFS_1; major facilitator transporter complement(803341..804501) Burkholderia ambifaria MC40-6 6177757 YP_001807433.1 CDS BamMC406_0721 NC_010551.1 804718 805467 R TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: bam:Bamb_0704 cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase complement(804718..805467) Burkholderia ambifaria MC40-6 6176516 YP_001807434.1 CDS BamMC406_0722 NC_010551.1 805592 806590 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_0705 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(805592..806590) Burkholderia ambifaria MC40-6 6178514 YP_001807435.1 CDS BamMC406_0723 NC_010551.1 806621 807607 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0706 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(806621..807607) Burkholderia ambifaria MC40-6 6178986 YP_001807436.1 CDS BamMC406_0724 NC_010551.1 808361 809572 D PFAM: aminotransferase class V; KEGG: bam:Bamb_0707 aminotransferase, class V; class V aminotransferase 808361..809572 Burkholderia ambifaria MC40-6 6178187 YP_001807437.1 CDS BamMC406_0725 NC_010551.1 809633 810568 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_0708 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(809633..810568) Burkholderia ambifaria MC40-6 6178406 YP_001807438.1 CDS BamMC406_0726 NC_010551.1 810702 811598 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_0709 protein of unknown function DUF6, transmembrane; hypothetical protein 810702..811598 Burkholderia ambifaria MC40-6 6178762 YP_001807439.1 CDS BamMC406_0727 NC_010551.1 811924 813138 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0710 hypothetical protein; major facilitator superfamily transporter complement(811924..813138) Burkholderia ambifaria MC40-6 6178947 YP_001807440.1 CDS BamMC406_0728 NC_010551.1 813487 815070 D TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: bam:Bamb_0711 molybdopterin dehydrogenase, FAD-binding; xanthine dehydrogenase small subunit 813487..815070 Burkholderia ambifaria MC40-6 6179112 YP_001807441.1 CDS BamMC406_0729 NC_010551.1 815088 817451 D KEGG: bam:Bamb_0712 xanthine dehydrogenase; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; xanthine dehydrogenase, molybdopterin binding subunit 815088..817451 Burkholderia ambifaria MC40-6 6178843 YP_001807442.1 CDS BamMC406_0730 NC_010551.1 817536 818198 D TIGRFAM: xanthine dehydrogenase accessory protein XdhC; KEGG: bam:Bamb_0713 xanthine and CO dehydrogenase maturation factor XdhC/CoxF family-like protein; xanthine dehydrogenase accessory protein XdhC 817536..818198 Burkholderia ambifaria MC40-6 6176241 YP_001807443.1 CDS BamMC406_0731 NC_010551.1 818293 818694 D KEGG: bam:Bamb_0714 hypothetical protein; hypothetical protein 818293..818694 Burkholderia ambifaria MC40-6 6178785 YP_001807444.1 CDS BamMC406_0732 NC_010551.1 818737 819684 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0715 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(818737..819684) Burkholderia ambifaria MC40-6 6178887 YP_001807445.1 CDS BamMC406_0733 NC_010551.1 819753 820391 R PFAM: DSBA oxidoreductase; KEGG: bam:Bamb_0716 DsbA oxidoreductase; DSBA oxidoreductase complement(819753..820391) Burkholderia ambifaria MC40-6 6178860 YP_001807446.1 CDS BamMC406_0734 NC_010551.1 820483 821973 R KEGG: bam:Bamb_0717 TRAP-type uncharacterized transport system periplasmic component-like protein; TRAP-type transporter periplasmic component-like protein complement(820483..821973) Burkholderia ambifaria MC40-6 6178240 YP_001807447.1 CDS BamMC406_0735 NC_010551.1 822438 822803 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bam:Bamb_0718 transport-associated; transport-associated 822438..822803 Burkholderia ambifaria MC40-6 6178295 YP_001807448.1 CDS BamMC406_0736 NC_010551.1 823052 825139 D KEGG: bam:Bamb_0719 hypothetical protein; hypothetical protein 823052..825139 Burkholderia ambifaria MC40-6 6178198 YP_001807449.1 CDS BamMC406_0737 NC_010551.1 825659 826447 R PFAM: protein of unknown function DUF81; KEGG: bam:Bamb_0720 protein of unknown function DUF81; hypothetical protein complement(825659..826447) Burkholderia ambifaria MC40-6 6178928 YP_001807450.1 CDS BamMC406_0738 NC_010551.1 826794 827528 R PFAM: DSBA oxidoreductase; KEGG: bam:Bamb_0721 DsbA oxidoreductase; DSBA oxidoreductase complement(826794..827528) Burkholderia ambifaria MC40-6 6178940 YP_001807451.1 CDS BamMC406_0739 NC_010551.1 827623 828417 R PFAM: YheO domain protein; KEGG: bam:Bamb_0722 YheO domain protein; YheO domain-containing protein complement(827623..828417) Burkholderia ambifaria MC40-6 6178196 YP_001807452.1 CDS BamMC406_0740 NC_010551.1 828414 829376 R PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: bam:Bamb_0723 ornithine cyclodeaminase/mu-crystallin; ornithine cyclodeaminase/mu-crystallin complement(828414..829376) Burkholderia ambifaria MC40-6 6178274 YP_001807453.1 CDS BamMC406_0741 NC_010551.1 829755 830534 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_0724 extracellular solute-binding protein, family 3; extracellular solute-binding protein 829755..830534 Burkholderia ambifaria MC40-6 6176980 YP_001807454.1 CDS BamMC406_0742 NC_010551.1 830602 831846 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_0725 D-amino-acid dehydrogenase; FAD dependent oxidoreductase 830602..831846 Burkholderia ambifaria MC40-6 6178310 YP_001807455.1 CDS BamMC406_0743 NC_010551.1 832117 832476 D PFAM: Secreted repeat of unknown function; KEGG: bam:Bamb_0726 secreted repeat of unknown function; hypothetical protein 832117..832476 Burkholderia ambifaria MC40-6 6177747 YP_001807456.1 CDS BamMC406_0744 NC_010551.1 832532 833047 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bam:Bamb_0727 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 832532..833047 Burkholderia ambifaria MC40-6 6178423 YP_001807457.1 CDS BamMC406_0745 NC_010551.1 833047 833826 D KEGG: bam:Bamb_0728 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor 833047..833826 Burkholderia ambifaria MC40-6 6178297 YP_001807458.1 CDS BamMC406_0746 NC_010551.1 833855 834277 D KEGG: bam:Bamb_0729 hypothetical protein; hypothetical protein 833855..834277 Burkholderia ambifaria MC40-6 6178816 YP_001807459.1 CDS BamMC406_0747 NC_010551.1 834274 834906 D KEGG: bam:Bamb_0730 hypothetical protein; hypothetical protein 834274..834906 Burkholderia ambifaria MC40-6 6179106 YP_001807460.1 CDS BamMC406_0748 NC_010551.1 834951 835460 D KEGG: bam:Bamb_0731 hypothetical protein; hypothetical protein 834951..835460 Burkholderia ambifaria MC40-6 6178830 YP_001807461.1 CDS groES NC_010551.1 835830 836123 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 835830..836123 Burkholderia ambifaria MC40-6 6177651 YP_001807462.1 CDS groEL NC_010551.1 836170 837810 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 836170..837810 Burkholderia ambifaria MC40-6 6178388 YP_001807463.1 CDS BamMC406_0751 NC_010551.1 837981 838847 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: bam:Bamb_0734 phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase type-1 complement(837981..838847) Burkholderia ambifaria MC40-6 6178335 YP_001807464.1 CDS BamMC406_0752 NC_010551.1 839062 839274 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: bam:Bamb_0735 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 839062..839274 Burkholderia ambifaria MC40-6 6178288 YP_001807465.1 CDS BamMC406_0753 NC_010551.1 839380 840705 D KEGG: bam:Bamb_0736 hypothetical protein; hypothetical protein 839380..840705 Burkholderia ambifaria MC40-6 6178923 YP_001807466.1 CDS BamMC406_0754 NC_010551.1 840888 841466 D PFAM: protein of unknown function DUF179; KEGG: bam:Bamb_0737 hypothetical protein; hypothetical protein 840888..841466 Burkholderia ambifaria MC40-6 6178713 YP_001807467.1 CDS BamMC406_0755 NC_010551.1 841463 841912 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 841463..841912 Burkholderia ambifaria MC40-6 6178270 YP_001807468.1 CDS BamMC406_0756 NC_010551.1 841899 842414 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 841899..842414 Burkholderia ambifaria MC40-6 6178231 YP_001807469.1 CDS pyrB NC_010551.1 842489 843520 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 842489..843520 Burkholderia ambifaria MC40-6 6178293 YP_001807470.1 CDS BamMC406_0758 NC_010551.1 843582 844859 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 843582..844859 Burkholderia ambifaria MC40-6 6177690 YP_001807471.1 CDS BamMC406_0759 NC_010551.1 844879 845736 D PFAM: phospholipid/glycerol acyltransferase; KEGG: bam:Bamb_0742 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 844879..845736 Burkholderia ambifaria MC40-6 6178787 YP_001807472.1 CDS apaH NC_010551.1 845768 846607 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(845768..846607) Burkholderia ambifaria MC40-6 6178183 YP_001807473.1 CDS BamMC406_0761 NC_010551.1 846953 848014 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bch:Bcen2424_0871 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 846953..848014 Burkholderia ambifaria MC40-6 6178467 YP_001807474.1 CDS BamMC406_0762 NC_010551.1 848026 848919 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bch:Bcen2424_0872 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 848026..848919 Burkholderia ambifaria MC40-6 6177734 YP_001807475.1 CDS BamMC406_0763 NC_010551.1 848904 849455 D KEGG: bmu:Bmul_2598 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 848904..849455 Burkholderia ambifaria MC40-6 6176986 YP_001807476.1 CDS BamMC406_0764 NC_010551.1 849448 850347 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: bam:Bamb_0754 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 849448..850347 Burkholderia ambifaria MC40-6 6178327 YP_001807477.1 CDS BamMC406_0765 NC_010551.1 850671 852119 D KEGG: bam:Bamb_0755 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 850671..852119 Burkholderia ambifaria MC40-6 6178435 YP_001807478.1 CDS BamMC406_0766 NC_010551.1 852119 852913 D PFAM: ABC-2 type transporter; KEGG: mfa:Mfla_1269 ABC-2; ABC-2 type transporter 852119..852913 Burkholderia ambifaria MC40-6 6178341 YP_001807479.1 CDS BamMC406_0767 NC_010551.1 852913 854133 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A2903 ABC-type transporter, ATPase component; ABC transporter-like protein 852913..854133 Burkholderia ambifaria MC40-6 6176949 YP_001807480.1 CDS BamMC406_0768 NC_010551.1 854133 855461 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_0757 methyltransferase type 11; type 11 methyltransferase 854133..855461 Burkholderia ambifaria MC40-6 6178618 YP_001807481.1 CDS BamMC406_0769 NC_010551.1 855461 859186 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_0758 glycosyl transferase, group 1; group 1 glycosyl transferase 855461..859186 Burkholderia ambifaria MC40-6 6178317 YP_001807482.1 CDS BamMC406_0770 NC_010551.1 859199 860239 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: bam:Bamb_0759 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 859199..860239 Burkholderia ambifaria MC40-6 6178286 YP_001807483.1 CDS BamMC406_0771 NC_010551.1 860217 861134 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bam:Bamb_0760 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 860217..861134 Burkholderia ambifaria MC40-6 6178209 YP_001807484.1 CDS BamMC406_0772 NC_010551.1 861382 862458 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_0761 glycosyl transferase, group 1; group 1 glycosyl transferase 861382..862458 Burkholderia ambifaria MC40-6 6178348 YP_001807485.1 CDS BamMC406_0773 NC_010551.1 862455 863645 D KEGG: bam:Bamb_0762 glycosyl transferase, group 1; group 1 glycosyl transferase 862455..863645 Burkholderia ambifaria MC40-6 6178331 YP_001807486.1 CDS BamMC406_0774 NC_010551.1 864096 865061 D PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bch:Bcen2424_0885 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 864096..865061 Burkholderia ambifaria MC40-6 6176706 YP_001807487.1 CDS BamMC406_0775 NC_010551.1 865067 866083 D PFAM: glycosyl transferase family 4; KEGG: bam:Bamb_0764 glycosyl transferase, family 4; glycosyl transferase family protein 865067..866083 Burkholderia ambifaria MC40-6 6176944 YP_001807488.1 CDS BamMC406_0776 NC_010551.1 866096 867979 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bam:Bamb_0765 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 866096..867979 Burkholderia ambifaria MC40-6 6178948 YP_001807489.1 CDS BamMC406_0777 NC_010551.1 868285 870618 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Curculin domain protein (mannose-binding) lectin; Peptidase S53 propeptide; KEGG: bam:Bamb_0766 curculin domain protein (mannose-binding) lectin; peptidase S53 propeptide 868285..870618 Burkholderia ambifaria MC40-6 6178306 YP_001807490.1 CDS BamMC406_0778 NC_010551.1 870737 871843 R PFAM: glycosyl transferase family 4; KEGG: bam:Bamb_0767 glycosyl transferase, family 4; glycosyl transferase family protein complement(870737..871843) Burkholderia ambifaria MC40-6 6178278 YP_001807491.1 CDS BamMC406_0779 NC_010551.1 871871 872893 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: bam:Bamb_0768 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(871871..872893) Burkholderia ambifaria MC40-6 6177355 YP_001807492.1 CDS BamMC406_0780 NC_010551.1 872908 874044 R PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_0769 glycosyl transferase, group 1; group 1 glycosyl transferase complement(872908..874044) Burkholderia ambifaria MC40-6 6178368 YP_001807493.1 CDS BamMC406_0781 NC_010551.1 874107 874931 R PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_0770 glycosyl transferase, family 2; glycosyl transferase family protein complement(874107..874931) Burkholderia ambifaria MC40-6 6178426 YP_001807494.1 CDS BamMC406_0782 NC_010551.1 874928 876184 R PFAM: polysaccharide biosynthesis protein; KEGG: bam:Bamb_0771 membrane protein; polysaccharide biosynthesis protein complement(874928..876184) Burkholderia ambifaria MC40-6 6178338 YP_001807495.1 CDS BamMC406_0783 NC_010551.1 876426 877820 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bam:Bamb_0772 phosphomannomutase; phosphomannomutase 876426..877820 Burkholderia ambifaria MC40-6 6178965 YP_001807496.1 CDS BamMC406_0784 NC_010551.1 877995 878990 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_0773 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 877995..878990 Burkholderia ambifaria MC40-6 6177731 YP_001807497.1 CDS BamMC406_0785 NC_010551.1 879052 879936 D KEGG: bam:Bamb_0774 hypothetical protein; hypothetical protein 879052..879936 Burkholderia ambifaria MC40-6 6178954 YP_001807498.1 CDS BamMC406_0786 NC_010551.1 879974 881341 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 879974..881341 Burkholderia ambifaria MC40-6 6178939 YP_001807499.1 CDS BamMC406_0787 NC_010551.1 881401 882048 R TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: bam:Bamb_0776 urease accessory protein UreG; urease accessory protein UreG complement(881401..882048) Burkholderia ambifaria MC40-6 6178926 YP_001807500.1 CDS BamMC406_0788 NC_010551.1 882063 882743 R PFAM: Urease accessory protein UreF; KEGG: bam:Bamb_0777 urease accessory protein UreF; urease accessory protein UreF complement(882063..882743) Burkholderia ambifaria MC40-6 6178355 YP_001807501.1 CDS BamMC406_0789 NC_010551.1 882730 883320 R PFAM: UreE urease accessory domain protein; KEGG: bam:Bamb_0778 urease accessory protein UreE; UreE urease accessory domain-containing protein complement(882730..883320) Burkholderia ambifaria MC40-6 6178217 YP_001807502.1 CDS ureC NC_010551.1 883338 885044 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(883338..885044) Burkholderia ambifaria MC40-6 6178419 YP_001807503.1 CDS ureB NC_010551.1 885074 885379 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(885074..885379) Burkholderia ambifaria MC40-6 6176048 YP_001807504.1 CDS ureA NC_010551.1 885394 885696 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(885394..885696) Burkholderia ambifaria MC40-6 6178956 YP_001807505.1 CDS BamMC406_0793 NC_010551.1 885938 886813 R PFAM: Urease accessory protein UreD; KEGG: bam:Bamb_0782 urease accessory protein UreD; urease accessory protein UreD complement(885938..886813) Burkholderia ambifaria MC40-6 6178391 YP_001807506.1 CDS BamMC406_0794 NC_010551.1 887018 887710 R KEGG: bam:Bamb_0783 ABC transporter related; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE complement(887018..887710) Burkholderia ambifaria MC40-6 6179076 YP_001807507.1 CDS BamMC406_0795 NC_010551.1 887715 888572 R TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: bam:Bamb_0784 ABC transporter related; urea ABC transporter ATP-binding protein UrtD complement(887715..888572) Burkholderia ambifaria MC40-6 6179089 YP_001807508.1 CDS BamMC406_0796 NC_010551.1 888569 889753 R TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: bam:Bamb_0785 inner-membrane translocator; urea ABC transporter permease UrtC complement(888569..889753) Burkholderia ambifaria MC40-6 6178235 YP_001807509.1 CDS BamMC406_0797 NC_010551.1 889755 891374 R TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bam:Bamb_0786 inner-membrane translocator; urea ABC transporter permease UrtB complement(889755..891374) Burkholderia ambifaria MC40-6 6178367 YP_001807510.1 CDS BamMC406_0798 NC_010551.1 891519 892826 R TIGRFAM: urea ABC transporter, urea binding protein; KEGG: bam:Bamb_0787 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; urea ABC transporter urea binding protein complement(891519..892826) Burkholderia ambifaria MC40-6 6178264 YP_001807511.1 CDS BamMC406_0799 NC_010551.1 893215 893538 R PFAM: Rhodanese domain protein; KEGG: bam:Bamb_0788 rhodanese domain protein; rhodanese domain-containing protein complement(893215..893538) Burkholderia ambifaria MC40-6 6177129 YP_001807512.1 CDS BamMC406_0800 NC_010551.1 893550 894206 R PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; KEGG: bam:Bamb_0789 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(893550..894206) Burkholderia ambifaria MC40-6 6178434 YP_001807513.1 CDS BamMC406_0801 NC_010551.1 894311 894568 R KEGG: bam:Bamb_0790 hypothetical protein; hypothetical protein complement(894311..894568) Burkholderia ambifaria MC40-6 6178457 YP_001807514.1 CDS BamMC406_0802 NC_010551.1 894641 896032 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(894641..896032) Burkholderia ambifaria MC40-6 6179054 YP_001807515.1 CDS BamMC406_0803 NC_010551.1 896309 896521 D KEGG: bam:Bamb_0792 protein of unknown function UPF0153; hypothetical protein 896309..896521 Burkholderia ambifaria MC40-6 6178302 YP_001807516.1 CDS BamMC406_0804 NC_010551.1 896659 897240 D KEGG: bam:Bamb_0793 hypothetical protein; hypothetical protein 896659..897240 Burkholderia ambifaria MC40-6 6177739 YP_001807517.1 CDS BamMC406_0805 NC_010551.1 897321 898151 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 897321..898151 Burkholderia ambifaria MC40-6 6178978 YP_001807518.1 CDS trmB NC_010551.1 898288 899055 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(898288..899055) Burkholderia ambifaria MC40-6 6178448 YP_001807519.1 CDS BamMC406_0807 NC_010551.1 899557 899901 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: bam:Bamb_0796 protein of unknown function DUF861, cupin_3; hypothetical protein 899557..899901 Burkholderia ambifaria MC40-6 6178414 YP_001807520.1 CDS BamMC406_0810 NC_010551.1 900983 901267 R KEGG: bam:Bamb_0798 hypothetical protein; hypothetical protein complement(900983..901267) Burkholderia ambifaria MC40-6 6176165 YP_001807521.1 CDS BamMC406_0811 NC_010551.1 901751 902911 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_0800 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein 901751..902911 Burkholderia ambifaria MC40-6 6176971 YP_001807522.1 CDS BamMC406_0813 NC_010551.1 903253 904146 D PFAM: Silent information regulator protein Sir2; KEGG: bam:Bamb_0803 silent information regulator protein Sir2; silent information regulator protein Sir2 903253..904146 Burkholderia ambifaria MC40-6 6178443 YP_001807523.1 CDS BamMC406_0814 NC_010551.1 904181 905392 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bam:Bamb_0804 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(904181..905392) Burkholderia ambifaria MC40-6 6177648 YP_001807524.1 CDS BamMC406_0815 NC_010551.1 905551 905763 R hypothetical protein complement(905551..905763) Burkholderia ambifaria MC40-6 6176339 YP_001807525.1 CDS BamMC406_0816 NC_010551.1 905789 906175 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 905789..906175 Burkholderia ambifaria MC40-6 6178361 YP_001807526.1 CDS BamMC406_0817 NC_010551.1 906199 906549 D PFAM: protein of unknown function DUF190; KEGG: bam:Bamb_0806 protein of unknown function DUF190; hypothetical protein 906199..906549 Burkholderia ambifaria MC40-6 6177404 YP_001807527.1 CDS BamMC406_0818 NC_010551.1 906559 907122 R PFAM: protein of unknown function YGGT; KEGG: bam:Bamb_0807 protein of unknown function YGGT; hypothetical protein complement(906559..907122) Burkholderia ambifaria MC40-6 6177345 YP_001807528.1 CDS BamMC406_0819 NC_010551.1 907199 908128 R PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bam:Bamb_0808 NADP oxidoreductase, coenzyme F420-dependent; coenzyme F420-dependent NADP oxidoreductase complement(907199..908128) Burkholderia ambifaria MC40-6 6176217 YP_001807529.1 CDS BamMC406_0820 NC_010551.1 908564 908932 D KEGG: bam:Bamb_0809 hypothetical protein; hypothetical protein 908564..908932 Burkholderia ambifaria MC40-6 6178995 YP_001807530.1 CDS BamMC406_0821 NC_010551.1 909052 909729 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_0810 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(909052..909729) Burkholderia ambifaria MC40-6 6178465 YP_001807531.1 CDS BamMC406_0822 NC_010551.1 909758 911314 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: bam:Bamb_0811 UbiD family decarboxylases; UbiD family decarboxylase complement(909758..911314) Burkholderia ambifaria MC40-6 6178427 YP_001807532.1 CDS BamMC406_0823 NC_010551.1 911911 913029 D PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_0812 lytic transglycosylase, catalytic; lytic transglycosylase 911911..913029 Burkholderia ambifaria MC40-6 6176737 YP_001807533.1 CDS BamMC406_0824 NC_010551.1 913140 914336 R PFAM: aminotransferase class I and II; KEGG: bam:Bamb_0815 aminotransferase; aminotransferase complement(913140..914336) Burkholderia ambifaria MC40-6 6178381 YP_001807534.1 CDS nusB NC_010551.1 914407 914844 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(914407..914844) Burkholderia ambifaria MC40-6 6178529 YP_001807535.1 CDS ribH NC_010551.1 914841 915356 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(914841..915356) Burkholderia ambifaria MC40-6 6178432 YP_001807536.1 CDS BamMC406_0827 NC_010551.1 915409 916551 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein complement(915409..916551) Burkholderia ambifaria MC40-6 6176240 YP_001807537.1 CDS BamMC406_0828 NC_010551.1 916739 917257 R KEGG: bam:Bamb_0819 hypothetical protein; hypothetical protein complement(916739..917257) Burkholderia ambifaria MC40-6 6178417 YP_001807538.1 CDS BamMC406_0829 NC_010551.1 917439 918068 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(917439..918068) Burkholderia ambifaria MC40-6 6177051 YP_001807539.1 CDS BamMC406_0830 NC_010551.1 918083 919204 R TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: bam:Bamb_0821 riboflavin biosynthesis protein RibD; riboflavin biosynthesis protein RibD complement(918083..919204) Burkholderia ambifaria MC40-6 6178572 YP_001807540.1 CDS BamMC406_0831 NC_010551.1 919217 920500 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(919217..920500) Burkholderia ambifaria MC40-6 6178422 YP_001807541.1 CDS BamMC406_0832 NC_010551.1 920696 921148 R KEGG: bam:Bamb_0823 hypothetical protein; hypothetical protein complement(920696..921148) Burkholderia ambifaria MC40-6 6179000 YP_001807542.1 CDS BamMC406_0833 NC_010551.1 921396 922613 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_0824 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 921396..922613 Burkholderia ambifaria MC40-6 6178998 YP_001807543.1 CDS BamMC406_0835 NC_010551.1 923116 923472 R KEGG: bam:Bamb_5682 hypothetical protein; hypothetical protein complement(923116..923472) Burkholderia ambifaria MC40-6 6178595 YP_001807544.1 CDS BamMC406_0837 NC_010551.1 924274 926202 R glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; bifunctional glucokinase/RpiR family transcriptional regulator complement(924274..926202) Burkholderia ambifaria MC40-6 6178494 YP_001807545.1 CDS BamMC406_0838 NC_010551.1 926180 926860 R TIGRFAM: 6-phosphogluconolactonase; KEGG: bam:Bamb_0826 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(926180..926860) Burkholderia ambifaria MC40-6 6177070 YP_001807546.1 CDS BamMC406_0839 NC_010551.1 926948 928417 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(926948..928417) Burkholderia ambifaria MC40-6 6178319 YP_001807547.1 CDS BamMC406_0840 NC_010551.1 928847 930094 D PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_0828 extracellular solute-binding protein, family 1; extracellular solute-binding protein 928847..930094 Burkholderia ambifaria MC40-6 6178900 YP_001807548.1 CDS BamMC406_0841 NC_010551.1 930293 931171 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_0829 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 930293..931171 Burkholderia ambifaria MC40-6 6177004 YP_001807549.1 CDS BamMC406_0842 NC_010551.1 931161 932018 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_0830 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 931161..932018 Burkholderia ambifaria MC40-6 6179021 YP_001807550.1 CDS BamMC406_0843 NC_010551.1 932131 933246 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_0831 ABC transporter related; ABC transporter-like protein 932131..933246 Burkholderia ambifaria MC40-6 6178994 YP_001807551.1 CDS BamMC406_0844 NC_010551.1 933344 933967 R PFAM: protein of unknown function UPF0126; KEGG: bam:Bamb_0832 protein of unknown function UPF0126; hypothetical protein complement(933344..933967) Burkholderia ambifaria MC40-6 6176801 YP_001807552.1 CDS BamMC406_0845 NC_010551.1 933954 934733 R PFAM: Smr protein/MutS2; KEGG: bam:Bamb_0833 Smr protein/MutS2; Smr protein/MutS2 complement(933954..934733) Burkholderia ambifaria MC40-6 6178520 YP_001807553.1 CDS BamMC406_0846 NC_010551.1 934868 935830 R KEGG: bam:Bamb_0834 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(934868..935830) Burkholderia ambifaria MC40-6 6178790 YP_001807554.1 CDS BamMC406_0847 NC_010551.1 936132 938441 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: bam:Bamb_0835 cell divisionFtsK/SpoIIIE; cell division protein FtsK 936132..938441 Burkholderia ambifaria MC40-6 6178579 YP_001807555.1 CDS lolA NC_010551.1 938488 939177 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 938488..939177 Burkholderia ambifaria MC40-6 6179009 YP_001807556.1 CDS BamMC406_0849 NC_010551.1 939416 940726 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_0837 recombination factor protein RarA; recombination factor protein RarA 939416..940726 Burkholderia ambifaria MC40-6 6178365 YP_001807557.1 CDS BamMC406_0850 NC_010551.1 940766 941032 R KEGG: bam:Bamb_0838 hypothetical protein; hypothetical protein complement(940766..941032) Burkholderia ambifaria MC40-6 6176282 YP_001807558.1 CDS BamMC406_0851 NC_010551.1 941285 942586 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 941285..942586 Burkholderia ambifaria MC40-6 6178510 YP_001807559.1 CDS BamMC406_0852 NC_010551.1 942871 942972 D hypothetical protein 942871..942972 Burkholderia ambifaria MC40-6 6178313 YP_001807560.1 CDS BamMC406_0853 NC_010551.1 943009 944169 R PFAM: fatty acid desaturase; KEGG: bam:Bamb_0841 alkane 1-monooxygenase; alkane 1-monooxygenase complement(943009..944169) Burkholderia ambifaria MC40-6 6179064 YP_001807561.1 CDS BamMC406_0854 NC_010551.1 944845 945360 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_0842 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 944845..945360 Burkholderia ambifaria MC40-6 6178503 YP_001807562.1 CDS BamMC406_0855 NC_010551.1 945517 946287 D blocks the formation of polar Z-ring septums; septum formation inhibitor 945517..946287 Burkholderia ambifaria MC40-6 6178464 YP_001807563.1 CDS BamMC406_0856 NC_010551.1 946347 947162 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bam:Bamb_0844 septum site-determining protein MinD; septum site-determining protein MinD 946347..947162 Burkholderia ambifaria MC40-6 6176163 YP_001807564.1 CDS BamMC406_0857 NC_010551.1 947175 947429 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 947175..947429 Burkholderia ambifaria MC40-6 6178444 YP_001807565.1 CDS BamMC406_0858 NC_010551.1 947589 947990 D KEGG: bam:Bamb_0846 hypothetical protein; hypothetical protein 947589..947990 Burkholderia ambifaria MC40-6 6177126 YP_001807566.1 CDS BamMC406_0859 NC_010551.1 948004 948114 D KEGG: bam:Bamb_0847 hypothetical protein; hypothetical protein 948004..948114 Burkholderia ambifaria MC40-6 6176319 YP_001807567.1 CDS BamMC406_0860 NC_010551.1 948108 949805 R PFAM: Chloride channel core; KEGG: bam:Bamb_0848 Cl-channel, voltage-gated family protein; chloride channel core protein complement(948108..949805) Burkholderia ambifaria MC40-6 6177319 YP_001807568.1 CDS BamMC406_0861 NC_010551.1 949838 950836 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_0849 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 949838..950836 Burkholderia ambifaria MC40-6 6178477 YP_001807569.1 CDS BamMC406_0862 NC_010551.1 950885 951064 R KEGG: bam:Bamb_0850 hypothetical protein; hypothetical protein complement(950885..951064) Burkholderia ambifaria MC40-6 6178445 YP_001807570.1 CDS BamMC406_0863 NC_010551.1 951169 952482 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_0851 general substrate transporter; general substrate transporter complement(951169..952482) Burkholderia ambifaria MC40-6 6176236 YP_001807571.1 CDS BamMC406_0864 NC_010551.1 952786 953214 R TIGRFAM: TonB family protein; KEGG: bam:Bamb_0852 TonB family protein; TonB family protein complement(952786..953214) Burkholderia ambifaria MC40-6 6178534 YP_001807572.1 CDS BamMC406_0865 NC_010551.1 953520 953813 R KEGG: bam:Bamb_0853 hypothetical protein; hypothetical protein complement(953520..953813) Burkholderia ambifaria MC40-6 6176276 YP_001807573.1 CDS BamMC406_0866 NC_010551.1 953981 954382 R KEGG: bam:Bamb_0854 hypothetical protein; hypothetical protein complement(953981..954382) Burkholderia ambifaria MC40-6 6178499 YP_001807574.1 CDS BamMC406_0867 NC_010551.1 954660 955874 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(954660..955874) Burkholderia ambifaria MC40-6 6178496 YP_001807575.1 CDS BamMC406_0868 NC_010551.1 955909 956538 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(955909..956538) Burkholderia ambifaria MC40-6 6177401 YP_001807576.1 CDS rph NC_010551.1 956531 957271 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(956531..957271) Burkholderia ambifaria MC40-6 6178545 YP_001807577.1 CDS BamMC406_0870 NC_010551.1 957446 958369 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: bam:Bamb_0858 hypothetical protein; hypothetical protein 957446..958369 Burkholderia ambifaria MC40-6 6178574 YP_001807578.1 CDS gmk NC_010551.1 958451 959134 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 958451..959134 Burkholderia ambifaria MC40-6 6178486 YP_001807579.1 CDS BamMC406_0872 NC_010551.1 959193 959396 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 959193..959396 Burkholderia ambifaria MC40-6 6177138 YP_001807580.1 CDS BamMC406_0873 NC_010551.1 959460 961826 D KEGG: bam:Bamb_0861 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 959460..961826 Burkholderia ambifaria MC40-6 6178541 YP_001807581.1 CDS greB NC_010551.1 962500 963063 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 962500..963063 Burkholderia ambifaria MC40-6 6178587 YP_001807582.1 CDS BamMC406_0875 NC_010551.1 963166 964308 R TIGRFAM: outer membrane insertion C-terminal signal; PFAM: porin Gram-negative type; KEGG: bam:Bamb_0863 porin, gram-negative type; outer membrane insertion C-terminal signal complement(963166..964308) Burkholderia ambifaria MC40-6 6178608 YP_001807583.1 CDS BamMC406_0876 NC_010551.1 964817 965080 R KEGG: bam:Bamb_0864 hypothetical protein; hypothetical protein complement(964817..965080) Burkholderia ambifaria MC40-6 6176185 YP_001807584.1 CDS BamMC406_0877 NC_010551.1 965472 965675 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bam:Bamb_0865 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 965472..965675 Burkholderia ambifaria MC40-6 6177156 YP_001807585.1 CDS BamMC406_0878 NC_010551.1 965836 966963 D KEGG: bam:Bamb_0866 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 965836..966963 Burkholderia ambifaria MC40-6 6176251 YP_001807586.1 CDS BamMC406_0879 NC_010551.1 967000 967593 R catalyzes the interconversion of chorismate to prephenate; chorismate mutase complement(967000..967593) Burkholderia ambifaria MC40-6 6175946 YP_001807587.1 CDS BamMC406_0880 NC_010551.1 967814 967960 R KEGG: bur:Bcep18194_A4116 hypothetical protein; hypothetical protein complement(967814..967960) Burkholderia ambifaria MC40-6 6178622 YP_001807588.1 CDS BamMC406_0881 NC_010551.1 968158 968547 D KEGG: bam:Bamb_0869 hypothetical protein; hypothetical protein 968158..968547 Burkholderia ambifaria MC40-6 6177196 YP_001807589.1 CDS BamMC406_0882 NC_010551.1 968675 971029 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_0870 TonB-dependent receptor; TonB-dependent receptor 968675..971029 Burkholderia ambifaria MC40-6 6178670 YP_001807590.1 CDS BamMC406_0883 NC_010551.1 971017 972276 D KEGG: bam:Bamb_0871 hypothetical protein; hypothetical protein 971017..972276 Burkholderia ambifaria MC40-6 6177178 YP_001807591.1 CDS BamMC406_0884 NC_010551.1 972273 972755 D KEGG: bam:Bamb_0872 hypothetical protein; hypothetical protein 972273..972755 Burkholderia ambifaria MC40-6 6178557 YP_001807592.1 CDS BamMC406_0885 NC_010551.1 972840 973094 R PFAM: Transglycosylase-associated protein; KEGG: bam:Bamb_0873 transglycosylase-associated protein; transglycosylase-associated protein complement(972840..973094) Burkholderia ambifaria MC40-6 6176215 YP_001807593.1 CDS BamMC406_0886 NC_010551.1 973355 973573 R KEGG: bam:Bamb_0874 hypothetical protein; hypothetical protein complement(973355..973573) Burkholderia ambifaria MC40-6 6176137 YP_001807594.1 CDS BamMC406_0887 NC_010551.1 973570 974454 R PFAM: monooxygenase FAD-binding; KEGG: bam:Bamb_0875 hypothetical protein; monooxygenase FAD-binding complement(973570..974454) Burkholderia ambifaria MC40-6 6178542 YP_001807595.1 CDS BamMC406_0888 NC_010551.1 974630 975244 R PFAM: regulatory protein LuxR; KEGG: bam:Bamb_0876 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(974630..975244) Burkholderia ambifaria MC40-6 6177142 YP_001807596.1 CDS BamMC406_0889 NC_010551.1 975897 976916 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(975897..976916) Burkholderia ambifaria MC40-6 6178438 YP_001807597.1 CDS pepN NC_010551.1 977205 979898 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: bam:Bamb_0878 aminopeptidase N; aminopeptidase N complement(977205..979898) Burkholderia ambifaria MC40-6 6177195 YP_001807598.1 CDS BamMC406_0891 NC_010551.1 980086 980787 D KEGG: bam:Bamb_0879 hypothetical protein; hypothetical protein 980086..980787 Burkholderia ambifaria MC40-6 6176312 YP_001807599.1 CDS BamMC406_0892 NC_010551.1 980858 981514 R PFAM: protein of unknown function UPF0016; KEGG: bam:Bamb_0880 protein of unknown function UPF0016; hypothetical protein complement(980858..981514) Burkholderia ambifaria MC40-6 6178524 YP_001807600.1 CDS BamMC406_0893 NC_010551.1 981740 983056 R Catalyzes the deamination of guanine; guanine deaminase complement(981740..983056) Burkholderia ambifaria MC40-6 6178624 YP_001807601.1 CDS BamMC406_0894 NC_010551.1 983053 983436 R KEGG: bam:Bamb_0882 hypothetical protein; hypothetical protein complement(983053..983436) Burkholderia ambifaria MC40-6 6178568 YP_001807602.1 CDS BamMC406_0895 NC_010551.1 983464 984489 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(983464..984489) Burkholderia ambifaria MC40-6 6178374 YP_001807603.1 CDS BamMC406_0896 NC_010551.1 984508 985512 R TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: bam:Bamb_0884 protein of unknown function DUF182; xanthine dehydrogenase accessory protein XdhC complement(984508..985512) Burkholderia ambifaria MC40-6 6178696 YP_001807604.1 CDS BamMC406_0897 NC_010551.1 986112 986624 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(986112..986624) Burkholderia ambifaria MC40-6 6178532 YP_001807605.1 CDS BamMC406_0898 NC_010551.1 986758 988134 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(986758..988134) Burkholderia ambifaria MC40-6 6175978 YP_001807606.1 CDS BamMC406_0899 NC_010551.1 988142 988822 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_0887 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(988142..988822) Burkholderia ambifaria MC40-6 6178681 YP_001807607.1 CDS BamMC406_0900 NC_010551.1 989092 990291 D PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: bam:Bamb_0888 peptidase C26; peptidase C26 989092..990291 Burkholderia ambifaria MC40-6 6178663 YP_001807608.1 CDS BamMC406_0901 NC_010551.1 990456 991106 D KEGG: bam:Bamb_0889 hypothetical protein; hypothetical protein 990456..991106 Burkholderia ambifaria MC40-6 6176214 YP_001807609.1 CDS BamMC406_0902 NC_010551.1 991184 992167 R KEGG: bam:Bamb_0890 hypothetical protein; hypothetical protein complement(991184..992167) Burkholderia ambifaria MC40-6 6177245 YP_001807610.1 CDS BamMC406_0903 NC_010551.1 992387 993682 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_0891 general substrate transporter; general substrate transporter 992387..993682 Burkholderia ambifaria MC40-6 6176361 YP_001807611.1 CDS BamMC406_0904 NC_010551.1 993758 995596 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_0892 TPR repeat-containing protein; hypothetical protein complement(993758..995596) Burkholderia ambifaria MC40-6 6178700 YP_001807612.1 CDS BamMC406_0905 NC_010551.1 995727 997379 D PFAM: monooxygenase FAD-binding; KEGG: bam:Bamb_0893 monooxygenase, FAD-binding; monooxygenase FAD-binding 995727..997379 Burkholderia ambifaria MC40-6 6178504 YP_001807613.1 CDS BamMC406_0906 NC_010551.1 997388 997639 R KEGG: bam:Bamb_0894 formate dehydrogenase, delta subunit; formate dehydrogenase subunit delta complement(997388..997639) Burkholderia ambifaria MC40-6 6178582 YP_001807614.1 CDS BamMC406_0907 NC_010551.1 997647 1000598 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bam:Bamb_0895 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(997647..1000598) Burkholderia ambifaria MC40-6 6176044 YP_001807615.1 CDS BamMC406_0908 NC_010551.1 1000616 1002193 R PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: bam:Bamb_0896 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(1000616..1002193) Burkholderia ambifaria MC40-6 6178704 YP_001807616.1 CDS BamMC406_0909 NC_010551.1 1002190 1002690 R KEGG: bam:Bamb_0897 NADH-ubiquinone oxidoreductase 24 kD subunit-like protein; NADH-ubiquinone oxidoreductase 24 kD subunit-like protein complement(1002190..1002690) Burkholderia ambifaria MC40-6 6176127 YP_001807617.1 CDS BamMC406_0910 NC_010551.1 1002822 1003928 D PFAM: regulatory protein LysR; KEGG: bam:Bamb_0898 transcriptional regulator of molybdate metabolism, LysR family; molybdate metabolism transcriptional regulator 1002822..1003928 Burkholderia ambifaria MC40-6 6178646 YP_001807618.1 CDS BamMC406_0911 NC_010551.1 1004029 1004298 D KEGG: bam:Bamb_0899 hypothetical protein; hypothetical protein 1004029..1004298 Burkholderia ambifaria MC40-6 6177376 YP_001807619.1 CDS BamMC406_0912 NC_010551.1 1004623 1004976 D KEGG: bam:Bamb_0900 hypothetical protein; hypothetical protein 1004623..1004976 Burkholderia ambifaria MC40-6 6178684 YP_001807620.1 CDS BamMC406_0913 NC_010551.1 1005233 1005442 D KEGG: xau:Xaut_2980 hypothetical protein; hypothetical protein 1005233..1005442 Burkholderia ambifaria MC40-6 6178708 YP_001807621.1 CDS BamMC406_0914 NC_010551.1 1005528 1005878 D KEGG: reu:Reut_C6417 hypothetical protein; hypothetical protein 1005528..1005878 Burkholderia ambifaria MC40-6 6178031 YP_001807622.1 CDS BamMC406_0915 NC_010551.1 1006297 1006776 R KEGG: rpc:RPC_4374 chromosome segregation protein SMC; hypothetical protein complement(1006297..1006776) Burkholderia ambifaria MC40-6 6177423 YP_001807623.1 CDS BamMC406_0916 NC_010551.1 1007136 1007414 R hypothetical protein complement(1007136..1007414) Burkholderia ambifaria MC40-6 6178699 YP_001807624.1 CDS BamMC406_0917 NC_010551.1 1008016 1008732 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_0913 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(1008016..1008732) Burkholderia ambifaria MC40-6 6176254 YP_001807625.1 CDS BamMC406_0918 NC_010551.1 1008746 1009444 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1008746..1009444) Burkholderia ambifaria MC40-6 6178536 YP_001807626.1 CDS BamMC406_0919 NC_010551.1 1009599 1010267 R PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_0915 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(1009599..1010267) Burkholderia ambifaria MC40-6 6176135 YP_001807627.1 CDS BamMC406_0920 NC_010551.1 1010806 1013409 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1010806..1013409 Burkholderia ambifaria MC40-6 6176198 YP_001807628.1 CDS BamMC406_0921 NC_010551.1 1013493 1014092 D KEGG: bam:Bamb_0917 hypothetical protein; hypothetical protein 1013493..1014092 Burkholderia ambifaria MC40-6 6177381 YP_001807629.1 CDS BamMC406_0922 NC_010551.1 1014254 1015336 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1014254..1015336 Burkholderia ambifaria MC40-6 6176245 YP_001807630.1 CDS BamMC406_0923 NC_010551.1 1015371 1016453 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: bam:Bamb_0919 chorismate mutase; chorismate mutase 1015371..1016453 Burkholderia ambifaria MC40-6 6178689 YP_001807631.1 CDS BamMC406_0924 NC_010551.1 1016550 1017566 D PFAM: Prephenate dehydrogenase; KEGG: bam:Bamb_0920 prephenate dehydrogenase; prephenate dehydrogenase 1016550..1017566 Burkholderia ambifaria MC40-6 6176160 YP_001807632.1 CDS BamMC406_0925 NC_010551.1 1017580 1018884 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1017580..1018884 Burkholderia ambifaria MC40-6 6178901 YP_001807633.1 CDS cmk NC_010551.1 1018897 1019583 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1018897..1019583 Burkholderia ambifaria MC40-6 6176558 YP_001807634.1 CDS rpsA NC_010551.1 1019708 1021438 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1019708..1021438 Burkholderia ambifaria MC40-6 6176365 YP_001807635.1 CDS ihfB NC_010551.1 1021461 1021784 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1021461..1021784 Burkholderia ambifaria MC40-6 6178686 YP_001807636.1 CDS BamMC406_0929 NC_010551.1 1021995 1022288 D KEGG: bam:Bamb_0925 hypothetical protein; hypothetical protein 1021995..1022288 Burkholderia ambifaria MC40-6 6178658 YP_001807637.1 CDS BamMC406_0930 NC_010551.1 1022342 1023514 D SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_0926 hypothetical protein; hypothetical protein 1022342..1023514 Burkholderia ambifaria MC40-6 6176294 YP_001807638.1 CDS BamMC406_0931 NC_010551.1 1023605 1025005 D TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: bam:Bamb_0927 UDP-glucose 6-dehydrogenase; nucleotide sugar dehydrogenase 1023605..1025005 Burkholderia ambifaria MC40-6 6176213 YP_001807639.1 CDS BamMC406_0932 NC_010551.1 1025013 1025963 D TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: bam:Bamb_0928 RfaE bifunctional protein; rfaE bifunctional protein 1025013..1025963 Burkholderia ambifaria MC40-6 6175998 YP_001807640.1 CDS BamMC406_0933 NC_010551.1 1026019 1027011 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bam:Bamb_0929 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 1026019..1027011 Burkholderia ambifaria MC40-6 6178592 YP_001807641.1 CDS BamMC406_0934 NC_010551.1 1027085 1027429 D KEGG: bam:Bamb_0930 helix-hairpin-helix motif; helix-hairpin-helix DNA-binding motif-containing protein 1027085..1027429 Burkholderia ambifaria MC40-6 6178598 YP_001807642.1 CDS cysM NC_010551.1 1027616 1028518 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1027616..1028518 Burkholderia ambifaria MC40-6 6178400 YP_001807643.1 CDS BamMC406_0936 NC_010551.1 1028595 1029815 R TIGRFAM: lytic murein transglycosylase B; KEGG: bam:Bamb_0932 lytic murein transglycosylase B; lytic murein transglycosylase B complement(1028595..1029815) Burkholderia ambifaria MC40-6 6177199 YP_001807644.1 CDS BamMC406_0937 NC_010551.1 1029985 1030908 D PFAM: histone deacetylase superfamily; KEGG: bam:Bamb_0933 histone deacetylase superfamily; histone deacetylase superfamily protein 1029985..1030908 Burkholderia ambifaria MC40-6 6178645 YP_001807645.1 CDS BamMC406_0938 NC_010551.1 1030931 1031893 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: bam:Bamb_0934 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1030931..1031893) Burkholderia ambifaria MC40-6 6176206 YP_001807646.1 CDS metN NC_010551.1 1032067 1033101 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1032067..1033101 Burkholderia ambifaria MC40-6 6176309 YP_001807647.1 CDS BamMC406_0940 NC_010551.1 1033091 1033744 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_0936 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1033091..1033744 Burkholderia ambifaria MC40-6 6178662 YP_001807648.1 CDS BamMC406_0941 NC_010551.1 1033773 1034567 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bam:Bamb_0937 lipoprotein, YaeC family; YaeC family lipoprotein 1033773..1034567 Burkholderia ambifaria MC40-6 6176579 YP_001807649.1 CDS BamMC406_0942 NC_010551.1 1034797 1035546 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bam:Bamb_0938 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein alpha/beta-subunit 1034797..1035546 Burkholderia ambifaria MC40-6 6176216 YP_001807650.1 CDS BamMC406_0943 NC_010551.1 1035563 1036498 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: bam:Bamb_0939 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1035563..1036498 Burkholderia ambifaria MC40-6 6178697 YP_001807651.1 CDS BamMC406_0944 NC_010551.1 1036824 1038110 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1036824..1038110) Burkholderia ambifaria MC40-6 6176299 YP_001807652.1 CDS BamMC406_0945 NC_010551.1 1038196 1038744 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_0941 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1038196..1038744 Burkholderia ambifaria MC40-6 6178637 YP_001807653.1 CDS BamMC406_0946 NC_010551.1 1038848 1040026 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bam:Bamb_0942 radical SAM domain protein; radical SAM domain-containing protein 1038848..1040026 Burkholderia ambifaria MC40-6 6177380 YP_001807654.1 CDS BamMC406_0947 NC_010551.1 1040044 1040511 R KEGG: bam:Bamb_0943 hypothetical protein; hypothetical protein complement(1040044..1040511) Burkholderia ambifaria MC40-6 6176333 YP_001807655.1 CDS BamMC406_0948 NC_010551.1 1040621 1041760 R KEGG: bam:Bamb_0944 glucose/sorbosone dehydrogenases-like protein; glucose/sorbosone dehydrogenase-like protein complement(1040621..1041760) Burkholderia ambifaria MC40-6 6177366 YP_001807656.1 CDS rpsP NC_010551.1 1041914 1042168 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1041914..1042168 Burkholderia ambifaria MC40-6 6178691 YP_001807657.1 CDS rimM NC_010551.1 1042211 1042888 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1042211..1042888 Burkholderia ambifaria MC40-6 6176279 YP_001807658.1 CDS trmD NC_010551.1 1042888 1043682 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1042888..1043682 Burkholderia ambifaria MC40-6 6179033 YP_001807659.1 CDS rplS NC_010551.1 1043816 1044208 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1043816..1044208 Burkholderia ambifaria MC40-6 6176394 YP_001807660.1 CDS BamMC406_0953 NC_010551.1 1044295 1044981 D PFAM: NUDIX hydrolase; KEGG: bam:Bamb_0949 NUDIX hydrolase; NUDIX hydrolase 1044295..1044981 Burkholderia ambifaria MC40-6 6178715 YP_001807661.1 CDS BamMC406_0954 NC_010551.1 1045102 1046040 D PFAM: cobalamin biosynthesis protein CbiB; KEGG: bam:Bamb_0950 adenosylcobinamide-phosphate synthase; CobD/CbiB family protein 1045102..1046040 Burkholderia ambifaria MC40-6 6177098 YP_001807662.1 CDS BamMC406_0955 NC_010551.1 1046126 1046443 R KEGG: bam:Bamb_0951 hypothetical protein; hypothetical protein complement(1046126..1046443) Burkholderia ambifaria MC40-6 6177387 YP_001807663.1 CDS BamMC406_0956 NC_010551.1 1046496 1047437 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1046496..1047437) Burkholderia ambifaria MC40-6 6178685 YP_001807664.1 CDS BamMC406_0957 NC_010551.1 1047434 1048693 R PFAM: peptidase M48 Ste24p; KEGG: bam:Bamb_0953 STE24 endopeptidase; Ste24 endopeptidase complement(1047434..1048693) Burkholderia ambifaria MC40-6 6178714 YP_001807665.1 CDS BamMC406_0958 NC_010551.1 1048793 1049413 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1048793..1049413 Burkholderia ambifaria MC40-6 6177284 YP_001807666.1 CDS mogA NC_010551.1 1049448 1050056 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(1049448..1050056) Burkholderia ambifaria MC40-6 6177299 YP_001807667.1 CDS BamMC406_0960 NC_010551.1 1050040 1050642 R PFAM: protein of unknown function DUF615; KEGG: bam:Bamb_0956 hypothetical protein; hypothetical protein complement(1050040..1050642) Burkholderia ambifaria MC40-6 6176259 YP_001807668.1 CDS BamMC406_0961 NC_010551.1 1050770 1052140 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bam:Bamb_0957 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 1050770..1052140 Burkholderia ambifaria MC40-6 6176823 YP_001807669.1 CDS BamMC406_0962 NC_010551.1 1052235 1052735 R PFAM: dihydrofolate reductase region; KEGG: bam:Bamb_0958 dihydrofolate reductase; dihydrofolate reductase complement(1052235..1052735) Burkholderia ambifaria MC40-6 6177186 YP_001807670.1 CDS BamMC406_0963 NC_010551.1 1053019 1053345 R KEGG: bam:Bamb_0959 hypothetical protein; hypothetical protein complement(1053019..1053345) Burkholderia ambifaria MC40-6 6176221 YP_001807671.1 CDS BamMC406_0964 NC_010551.1 1053852 1055249 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bam:Bamb_0960 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1053852..1055249 Burkholderia ambifaria MC40-6 6179042 YP_001807672.1 CDS thyA NC_010551.1 1055292 1056263 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1055292..1056263 Burkholderia ambifaria MC40-6 6176374 YP_001807673.1 CDS BamMC406_0966 NC_010551.1 1056371 1058941 R KEGG: bam:Bamb_0962 hypothetical protein; hypothetical protein complement(1056371..1058941) Burkholderia ambifaria MC40-6 6177450 YP_001807674.1 CDS BamMC406_0967 NC_010551.1 1059104 1059811 R PFAM: regulatory protein ArsR; KEGG: bam:Bamb_0963 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(1059104..1059811) Burkholderia ambifaria MC40-6 6176149 YP_001807675.1 CDS BamMC406_0968 NC_010551.1 1059891 1060124 D KEGG: bvi:Bcep1808_1008 hypothetical protein; hypothetical protein 1059891..1060124 Burkholderia ambifaria MC40-6 6176773 YP_001807676.1 CDS BamMC406_0969 NC_010551.1 1060268 1060780 D PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_0965 thioesterase superfamily protein; thioesterase superfamily protein 1060268..1060780 Burkholderia ambifaria MC40-6 6178734 YP_001807677.1 CDS fumC NC_010551.1 1060856 1062250 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1060856..1062250) Burkholderia ambifaria MC40-6 6178723 YP_001807678.1 CDS BamMC406_0971 NC_010551.1 1062407 1063795 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bam:Bamb_0967 MATE efflux family protein; MATE efflux family protein complement(1062407..1063795) Burkholderia ambifaria MC40-6 6176174 YP_001807679.1 CDS BamMC406_0972 NC_010551.1 1063924 1064142 R KEGG: bam:Bamb_0968 hypothetical protein; hypothetical protein complement(1063924..1064142) Burkholderia ambifaria MC40-6 6178724 YP_001807680.1 CDS BamMC406_0973 NC_010551.1 1064430 1064840 D KEGG: bam:Bamb_0969 hypothetical protein; hypothetical protein 1064430..1064840 Burkholderia ambifaria MC40-6 6176226 YP_001807681.1 CDS BamMC406_0974 NC_010551.1 1064956 1065732 R KEGG: bam:Bamb_0970 hypothetical protein; hypothetical protein complement(1064956..1065732) Burkholderia ambifaria MC40-6 6178657 YP_001807682.1 CDS BamMC406_0975 NC_010551.1 1065890 1066228 R PFAM: branched-chain amino acid transport; KEGG: bam:Bamb_0971 branched-chain amino acid transport; branched-chain amino acid transport complement(1065890..1066228) Burkholderia ambifaria MC40-6 6179027 YP_001807683.1 CDS BamMC406_0976 NC_010551.1 1066225 1066998 R PFAM: AzlC family protein; KEGG: bam:Bamb_0972 AzlC family protein; AzlC family protein complement(1066225..1066998) Burkholderia ambifaria MC40-6 6176351 YP_001807684.1 CDS BamMC406_0977 NC_010551.1 1067121 1068023 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bam:Bamb_0973 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1067121..1068023) Burkholderia ambifaria MC40-6 6176284 YP_001807685.1 CDS BamMC406_0978 NC_010551.1 1068085 1068570 R PFAM: CreA family protein; KEGG: bam:Bamb_0974 CreA family protein; CreA family protein complement(1068085..1068570) Burkholderia ambifaria MC40-6 6178638 YP_001807686.1 CDS BamMC406_0979 NC_010551.1 1069006 1069329 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bam:Bamb_0975 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1069006..1069329) Burkholderia ambifaria MC40-6 6176888 YP_001807687.1 CDS BamMC406_0980 NC_010551.1 1069616 1070815 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1069616..1070815 Burkholderia ambifaria MC40-6 6178837 YP_001807688.1 CDS BamMC406_0981 NC_010551.1 1070902 1071564 D PFAM: protein of unknown function DUF162; KEGG: bam:Bamb_0977 protein of unknown function DUF162; hypothetical protein 1070902..1071564 Burkholderia ambifaria MC40-6 6177686 YP_001807689.1 CDS BamMC406_0982 NC_010551.1 1071617 1073047 D KEGG: bam:Bamb_0978 Na+/H+ antiporter NhaD and related arsenite permeases-like protein; Na+/H+ antiporter NhaD-like protein 1071617..1073047 Burkholderia ambifaria MC40-6 6177915 YP_001807690.1 CDS BamMC406_0983 NC_010551.1 1073130 1074119 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_0979 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1073130..1074119 Burkholderia ambifaria MC40-6 6177964 YP_001807691.1 CDS BamMC406_0984 NC_010551.1 1074116 1075603 D PFAM: protein of unknown function DUF195; KEGG: bam:Bamb_0980 protein of unknown function DUF195; hypothetical protein 1074116..1075603 Burkholderia ambifaria MC40-6 6177408 YP_001807692.1 CDS BamMC406_0985 NC_010551.1 1075698 1076183 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_0981 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1075698..1076183) Burkholderia ambifaria MC40-6 6176880 YP_001807693.1 CDS BamMC406_0986 NC_010551.1 1076180 1076455 R KEGG: bch:Bcen2424_1106 hypothetical protein; hypothetical protein complement(1076180..1076455) Burkholderia ambifaria MC40-6 6178738 YP_001807694.1 CDS BamMC406_0987 NC_010551.1 1076493 1077788 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: bam:Bamb_0983 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein complement(1076493..1077788) Burkholderia ambifaria MC40-6 6176844 YP_001807695.1 CDS mobA NC_010551.1 1077894 1078511 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(1077894..1078511) Burkholderia ambifaria MC40-6 6177986 YP_001807696.1 CDS moaA NC_010551.1 1078540 1079652 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1078540..1079652) Burkholderia ambifaria MC40-6 6176255 YP_001807697.1 CDS BamMC406_0990 NC_010551.1 1079845 1081167 D PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_06951 hypothetical protein; transposase IS4 family protein 1079845..1081167 Burkholderia ambifaria MC40-6 6178558 YP_001807698.1 CDS BamMC406_0991 NC_010551.1 1081217 1084396 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: bam:Bamb_0986 ribonuclease, Rne/Rng family; ribonuclease complement(1081217..1084396) Burkholderia ambifaria MC40-6 6176581 YP_001807699.1 CDS BamMC406_0992 NC_010551.1 1085172 1086122 D KEGG: bam:Bamb_0988 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1085172..1086122 Burkholderia ambifaria MC40-6 6179038 YP_001807700.1 CDS BamMC406_0993 NC_010551.1 1086119 1086787 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_0989 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 1086119..1086787 Burkholderia ambifaria MC40-6 6176306 YP_001807701.1 CDS BamMC406_0994 NC_010551.1 1086784 1087194 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_0990 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 1086784..1087194 Burkholderia ambifaria MC40-6 6176427 YP_001807702.1 CDS BamMC406_0995 NC_010551.1 1087207 1088199 D PFAM: peptidase S49; KEGG: bam:Bamb_0991 peptidase S49; peptidase S49 1087207..1088199 Burkholderia ambifaria MC40-6 6176171 YP_001807703.1 CDS BamMC406_0996 NC_010551.1 1088269 1088991 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bam:Bamb_0992 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(1088269..1088991) Burkholderia ambifaria MC40-6 6178755 YP_001807704.1 CDS BamMC406_0997 NC_010551.1 1088988 1089617 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1088988..1089617) Burkholderia ambifaria MC40-6 6178758 YP_001807705.1 CDS BamMC406_0998 NC_010551.1 1089874 1090509 D PFAM: protein of unknown function DUF177; KEGG: bam:Bamb_0994 protein of unknown function DUF177; hypothetical protein 1089874..1090509 Burkholderia ambifaria MC40-6 6176037 YP_001807706.1 CDS rpmF NC_010551.1 1090608 1090787 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1090608..1090787 Burkholderia ambifaria MC40-6 6178531 YP_001807707.1 CDS BamMC406_1000 NC_010551.1 1090917 1092023 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1090917..1092023 Burkholderia ambifaria MC40-6 6177922 YP_001807708.1 CDS BamMC406_1001 NC_010551.1 1092024 1093013 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1092024..1093013 Burkholderia ambifaria MC40-6 6176656 YP_001807709.1 CDS BamMC406_1002 NC_010551.1 1093099 1094031 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: bam:Bamb_0998 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 1093099..1094031 Burkholderia ambifaria MC40-6 6176193 YP_001807710.1 CDS fabG NC_010551.1 1094068 1094817 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1094068..1094817 Burkholderia ambifaria MC40-6 6179075 YP_001807711.1 CDS acpP NC_010551.1 1094962 1095201 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1094962..1095201 Burkholderia ambifaria MC40-6 6178599 YP_001807712.1 CDS BamMC406_1005 NC_010551.1 1095364 1096596 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1095364..1096596 Burkholderia ambifaria MC40-6 6178250 YP_001807713.1 CDS BamMC406_1006 NC_010551.1 1096672 1097073 D KEGG: bam:Bamb_1002 hypothetical protein; hypothetical protein 1096672..1097073 Burkholderia ambifaria MC40-6 6176156 YP_001807714.1 CDS BamMC406_1007 NC_010551.1 1097165 1097764 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1097165..1097764 Burkholderia ambifaria MC40-6 6176837 YP_001807715.1 CDS BamMC406_1008 NC_010551.1 1097852 1098469 D PFAM: Anti sigma-E protein RseA family protein; KEGG: bam:Bamb_1004 anti sigma-E protein, RseA; anti sigma-E protein, RseA 1097852..1098469 Burkholderia ambifaria MC40-6 6177499 YP_001807716.1 CDS BamMC406_1009 NC_010551.1 1098475 1099527 D PFAM: MucB/RseB family protein; KEGG: bam:Bamb_1005 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein MucB/RseB 1098475..1099527 Burkholderia ambifaria MC40-6 6176338 YP_001807717.1 CDS BamMC406_1010 NC_010551.1 1099544 1101043 D KEGG: bam:Bamb_1006 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1099544..1101043 Burkholderia ambifaria MC40-6 6178403 YP_001807718.1 CDS BamMC406_1011 NC_010551.1 1101051 1101287 D PFAM: glutaredoxin 2; KEGG: bam:Bamb_1007 glutaredoxin 2; glutaredoxin 1101051..1101287 Burkholderia ambifaria MC40-6 6177676 YP_001807719.1 CDS BamMC406_1012 NC_010551.1 1101501 1103294 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1101501..1103294 Burkholderia ambifaria MC40-6 6176592 YP_001807720.1 CDS BamMC406_1013 NC_010551.1 1103311 1104204 D KEGG: bam:Bamb_1009 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1103311..1104204 Burkholderia ambifaria MC40-6 6178371 YP_001807721.1 CDS BamMC406_1014 NC_010551.1 1104365 1105642 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1104365..1105642 Burkholderia ambifaria MC40-6 6177161 YP_001807722.1 CDS era NC_010551.1 1105739 1106602 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1105739..1106602 Burkholderia ambifaria MC40-6 6177054 YP_001807723.1 CDS recO NC_010551.1 1106589 1107428 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1106589..1107428 Burkholderia ambifaria MC40-6 6176117 YP_001807724.1 CDS BamMC406_1017 NC_010551.1 1107425 1108201 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1107425..1108201 Burkholderia ambifaria MC40-6 6176840 YP_001807725.1 CDS acpS NC_010551.1 1108271 1108711 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1108271..1108711 Burkholderia ambifaria MC40-6 6176797 YP_001807726.1 CDS BamMC406_1019 NC_010551.1 1108728 1109756 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1108728..1109756 Burkholderia ambifaria MC40-6 6176646 YP_001807727.1 CDS BamMC406_1020 NC_010551.1 1109913 1111298 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bam:Bamb_1016 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(1109913..1111298) Burkholderia ambifaria MC40-6 6177165 YP_001807728.1 CDS BamMC406_1021 NC_010551.1 1111571 1112128 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1111571..1112128) Burkholderia ambifaria MC40-6 6177180 YP_001807729.1 CDS BamMC406_1022 NC_010551.1 1112267 1113454 R KEGG: bam:Bamb_1018 hypothetical protein; hypothetical protein complement(1112267..1113454) Burkholderia ambifaria MC40-6 6177041 YP_001807730.1 CDS uvrC NC_010551.1 1113529 1115583 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1113529..1115583 Burkholderia ambifaria MC40-6 6178752 YP_001807731.1 CDS BamMC406_1024 NC_010551.1 1115692 1116279 D KEGG: bam:Bamb_1020 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1115692..1116279 Burkholderia ambifaria MC40-6 6177309 YP_001807732.1 CDS BamMC406_1025 NC_010551.1 1117166 1118644 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bam:Bamb_1021 diguanylate cyclase; diguanylate cyclase 1117166..1118644 Burkholderia ambifaria MC40-6 6177036 YP_001807733.1 CDS BamMC406_1026 NC_010551.1 1118991 1119326 R KEGG: bam:Bamb_1022 hypothetical protein; hypothetical protein complement(1118991..1119326) Burkholderia ambifaria MC40-6 6176513 YP_001807734.1 CDS BamMC406_1027 NC_010551.1 1119667 1120155 R KEGG: bam:Bamb_1023 hypothetical protein; hypothetical protein complement(1119667..1120155) Burkholderia ambifaria MC40-6 6176416 YP_001807735.1 CDS BamMC406_1028 NC_010551.1 1120497 1121045 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_1024 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1120497..1121045) Burkholderia ambifaria MC40-6 6176845 YP_001807736.1 CDS BamMC406_1029 NC_010551.1 1121042 1121701 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_1025 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1121042..1121701) Burkholderia ambifaria MC40-6 6175996 YP_001807737.1 CDS BamMC406_1030 NC_010551.1 1121829 1122065 D KEGG: bam:Bamb_1026 hypothetical protein; hypothetical protein 1121829..1122065 Burkholderia ambifaria MC40-6 6176922 YP_001807738.1 CDS BamMC406_1031 NC_010551.1 1122065 1122871 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: bam:Bamb_1027 methionine aminopeptidase, type I; methionine aminopeptidase 1122065..1122871 Burkholderia ambifaria MC40-6 6176584 YP_001807739.1 CDS BamMC406_1032 NC_010551.1 1123010 1123513 R SMART: GAF domain protein; KEGG: bam:Bamb_1028 putative GAF sensor protein; putative GAF sensor protein complement(1123010..1123513) Burkholderia ambifaria MC40-6 6177230 YP_001807740.1 CDS BamMC406_1033 NC_010551.1 1123660 1124577 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1029 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1123660..1124577) Burkholderia ambifaria MC40-6 6177153 YP_001807741.1 CDS BamMC406_1034 NC_010551.1 1124688 1125554 D PFAM: Pirin domain protein; KEGG: bam:Bamb_1030 pirin domain protein domain protein; pirin domain-containing protein 1124688..1125554 Burkholderia ambifaria MC40-6 6176919 YP_001807742.1 CDS BamMC406_1035 NC_010551.1 1125681 1126172 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_1031 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1125681..1126172 Burkholderia ambifaria MC40-6 6176586 YP_001807743.1 CDS BamMC406_1036 NC_010551.1 1126192 1127064 R KEGG: bam:Bamb_1032 membrane protein; membrane protein complement(1126192..1127064) Burkholderia ambifaria MC40-6 6176631 YP_001807744.1 CDS BamMC406_1037 NC_010551.1 1127075 1127515 R PFAM: protein of unknown function DUF461; KEGG: bam:Bamb_1033 protein of unknown function DUF461; hypothetical protein complement(1127075..1127515) Burkholderia ambifaria MC40-6 6176956 YP_001807745.1 CDS BamMC406_1038 NC_010551.1 1127512 1128165 R PFAM: electron transport protein SCO1/SenC; KEGG: bam:Bamb_1034 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(1127512..1128165) Burkholderia ambifaria MC40-6 6177264 YP_001807746.1 CDS BamMC406_1039 NC_010551.1 1128449 1129201 D KEGG: bam:Bamb_1035 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase 1128449..1129201 Burkholderia ambifaria MC40-6 6176478 YP_001807747.1 CDS BamMC406_1040 NC_010551.1 1129198 1130577 D KEGG: bam:Bamb_1036 alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase 1129198..1130577 Burkholderia ambifaria MC40-6 6176852 YP_001807748.1 CDS BamMC406_1041 NC_010551.1 1130670 1132661 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1037 ABC transporter related; ABC transporter-like protein complement(1130670..1132661) Burkholderia ambifaria MC40-6 6177071 YP_001807749.1 CDS BamMC406_1042 NC_010551.1 1133062 1134126 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_1038 glycosyl transferase, group 1; group 1 glycosyl transferase 1133062..1134126 Burkholderia ambifaria MC40-6 6176103 YP_001807750.1 CDS BamMC406_1043 NC_010551.1 1134363 1135163 D KEGG: bam:Bamb_1039 hypothetical protein; hypothetical protein 1134363..1135163 Burkholderia ambifaria MC40-6 6176467 YP_001807751.1 CDS BamMC406_1044 NC_010551.1 1135201 1135671 D KEGG: bam:Bamb_1040 membrane protein-like protein; hypothetical protein 1135201..1135671 Burkholderia ambifaria MC40-6 6175999 YP_001807752.1 CDS BamMC406_1045 NC_010551.1 1135860 1137212 R TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_1041 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; glucarate dehydratase complement(1135860..1137212) Burkholderia ambifaria MC40-6 6176481 YP_001807753.1 CDS BamMC406_1046 NC_010551.1 1137573 1138334 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_1043 GntR domain protein; GntR family transcriptional regulator 1137573..1138334 Burkholderia ambifaria MC40-6 6176408 YP_001807754.1 CDS BamMC406_1047 NC_010551.1 1138549 1139697 R PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_1044 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1138549..1139697) Burkholderia ambifaria MC40-6 6176010 YP_001807755.1 CDS BamMC406_1048 NC_010551.1 1140047 1142191 R KEGG: bam:Bamb_1045 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; phospholipase C, phosphocholine-specific complement(1140047..1142191) Burkholderia ambifaria MC40-6 6177363 YP_001807756.1 CDS BamMC406_1049 NC_010551.1 1142505 1143365 R TIGRFAM: pyridoxal kinase; KEGG: bam:Bamb_1046 pyridoxal kinase; pyridoxal kinase complement(1142505..1143365) Burkholderia ambifaria MC40-6 6177336 YP_001807757.1 CDS BamMC406_1050 NC_010551.1 1143540 1144598 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_1047 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1143540..1144598 Burkholderia ambifaria MC40-6 6177385 YP_001807758.1 CDS BamMC406_1051 NC_010551.1 1144631 1145629 R PFAM: Luciferase-like monooxygenase; KEGG: bam:Bamb_1048 luciferase family protein; luciferase-like monooxygenase complement(1144631..1145629) Burkholderia ambifaria MC40-6 6176770 YP_001807759.1 CDS BamMC406_1052 NC_010551.1 1146280 1147455 D TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_1049 glycosyl transferase, family 2; hopanoid biosynthesis associated glycosyl transferase protein HpnI 1146280..1147455 Burkholderia ambifaria MC40-6 6176055 YP_001807760.1 CDS BamMC406_1053 NC_010551.1 1147642 1149063 D KEGG: bam:Bamb_1050 radical SAM domain protein; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnJ 1147642..1149063 Burkholderia ambifaria MC40-6 6179012 YP_001807761.1 CDS BamMC406_1054 NC_010551.1 1149067 1149951 D TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; KEGG: bam:Bamb_1051 YdjC family protein; hopanoid biosynthesis associated protein HpnK 1149067..1149951 Burkholderia ambifaria MC40-6 6177317 YP_001807762.1 CDS BamMC406_1055 NC_010551.1 1149948 1150991 D KEGG: bam:Bamb_1052 hypothetical protein; hypothetical protein 1149948..1150991 Burkholderia ambifaria MC40-6 6176854 YP_001807763.1 CDS BamMC406_1056 NC_010551.1 1151077 1151634 D KEGG: bur:Bcep18194_A4286 hypothetical protein; hypothetical protein 1151077..1151634 Burkholderia ambifaria MC40-6 6177311 YP_001807764.1 CDS BamMC406_1057 NC_010551.1 1151907 1152596 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1054 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1151907..1152596 Burkholderia ambifaria MC40-6 6176890 YP_001807765.1 CDS BamMC406_1058 NC_010551.1 1152593 1153306 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1055 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1152593..1153306 Burkholderia ambifaria MC40-6 6176975 YP_001807766.1 CDS BamMC406_1059 NC_010551.1 1153328 1154128 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1056 ABC transporter related; ABC transporter-like protein 1153328..1154128 Burkholderia ambifaria MC40-6 6177262 YP_001807767.1 CDS BamMC406_1060 NC_010551.1 1154226 1155191 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_1057 transcriptional regulator, AraC family; AraC family transcriptional regulator 1154226..1155191 Burkholderia ambifaria MC40-6 6177377 YP_001807768.1 CDS argD NC_010551.1 1156128 1157360 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 1156128..1157360 Burkholderia ambifaria MC40-6 6176846 YP_001807769.1 CDS BamMC406_1062 NC_010551.1 1157391 1158452 D KEGG: bam:Bamb_1062 arginine N-succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine/ornithine succinyltransferase, alpha subunit; PFAM: arginine N-succinyltransferase beta subunit; arginine/ornithine succinyltransferase subunit alpha 1157391..1158452 Burkholderia ambifaria MC40-6 6176700 YP_001807770.1 CDS BamMC406_1063 NC_010551.1 1158449 1159492 D KEGG: bam:Bamb_1063 arginine N-succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 1158449..1159492 Burkholderia ambifaria MC40-6 6179113 YP_001807771.1 CDS astD NC_010551.1 1159500 1160963 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1159500..1160963 Burkholderia ambifaria MC40-6 6176976 YP_001807772.1 CDS BamMC406_1065 NC_010551.1 1160978 1162318 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1160978..1162318 Burkholderia ambifaria MC40-6 6176649 YP_001807773.1 CDS BamMC406_1066 NC_010551.1 1162326 1163423 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1162326..1163423 Burkholderia ambifaria MC40-6 6177201 YP_001807774.1 CDS BamMC406_1067 NC_010551.1 1163788 1164582 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_1067 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1163788..1164582 Burkholderia ambifaria MC40-6 6176720 YP_001807775.1 CDS BamMC406_1068 NC_010551.1 1164679 1166202 R PFAM: Metal-dependent hydrolase HDOD; KEGG: bam:Bamb_1068 putative signal transduction protein; putative signal transduction protein complement(1164679..1166202) Burkholderia ambifaria MC40-6 6177233 YP_001807776.2 CDS BamMC406_1069 NC_010551.1 1166230 1168062 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: bam:Bamb_1069 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(1166230..1168062) Burkholderia ambifaria MC40-6 6176722 YP_001807777.1 CDS BamMC406_1070 NC_010551.1 1168251 1168802 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_1070 redoxin domain protein; alkyl hydroperoxide reductase 1168251..1168802 Burkholderia ambifaria MC40-6 6176498 YP_001807778.1 CDS BamMC406_1071 NC_010551.1 1168913 1169542 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: bam:Bamb_1071 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1168913..1169542) Burkholderia ambifaria MC40-6 6176939 YP_001807779.1 CDS BamMC406_1072 NC_010551.1 1169805 1171310 D PFAM: protein of unknown function DUF88; KEGG: bam:Bamb_1072 protein of unknown function DUF88; hypothetical protein 1169805..1171310 Burkholderia ambifaria MC40-6 6176109 YP_001807780.1 CDS BamMC406_1073 NC_010551.1 1171389 1171772 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_1073 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1171389..1171772) Burkholderia ambifaria MC40-6 6176051 YP_001807781.1 CDS BamMC406_1074 NC_010551.1 1172050 1172490 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_1074 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1172050..1172490 Burkholderia ambifaria MC40-6 6176755 YP_001807782.1 CDS BamMC406_1075 NC_010551.1 1172474 1174678 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_1075 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 1172474..1174678 Burkholderia ambifaria MC40-6 6177367 YP_001807783.1 CDS BamMC406_1076 NC_010551.1 1174769 1175857 D KEGG: bam:Bamb_1076 outer membrane protein (porin); outer membrane protein (porin) 1174769..1175857 Burkholderia ambifaria MC40-6 6177382 YP_001807784.1 CDS BamMC406_1077 NC_010551.1 1175889 1176851 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_1077 transcriptional regulator, AraC family; AraC family transcriptional regulator 1175889..1176851 Burkholderia ambifaria MC40-6 6177633 YP_001807785.1 CDS BamMC406_1078 NC_010551.1 1176993 1180301 R PFAM: acriflavin resistance protein; KEGG: bam:Bamb_1078 acriflavin resistance protein; acriflavin resistance protein complement(1176993..1180301) Burkholderia ambifaria MC40-6 6177697 YP_001807786.1 CDS BamMC406_1079 NC_010551.1 1180305 1183424 R PFAM: acriflavin resistance protein; KEGG: bam:Bamb_1079 acriflavin resistance protein; acriflavin resistance protein complement(1180305..1183424) Burkholderia ambifaria MC40-6 6177874 YP_001807787.1 CDS BamMC406_1080 NC_010551.1 1183440 1184813 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_1080 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1183440..1184813) Burkholderia ambifaria MC40-6 6177891 YP_001807788.1 CDS BamMC406_1081 NC_010551.1 1185189 1185881 R PFAM: regulatory protein IclR; KEGG: bam:Bamb_1081 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1185189..1185881) Burkholderia ambifaria MC40-6 6177829 YP_001807789.1 CDS BamMC406_1082 NC_010551.1 1186466 1187608 R PFAM: monooxygenase FAD-binding; KEGG: bam:Bamb_1082 hypothetical protein; hypothetical protein complement(1186466..1187608) Burkholderia ambifaria MC40-6 6178856 YP_001807790.1 CDS BamMC406_1083 NC_010551.1 1187687 1188562 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_1083 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1187687..1188562) Burkholderia ambifaria MC40-6 6178930 YP_001807791.1 CDS BamMC406_1084 NC_010551.1 1188865 1190820 R KEGG: bam:Bamb_1084 phosphatase-like protein; phosphatase-like protein complement(1188865..1190820) Burkholderia ambifaria MC40-6 6177106 YP_001807792.1 CDS BamMC406_1085 NC_010551.1 1191004 1192197 R PFAM: Rh family protein/ammonium transporter; KEGG: bam:Bamb_1085 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter complement(1191004..1192197) Burkholderia ambifaria MC40-6 6178966 YP_001807793.1 CDS BamMC406_1086 NC_010551.1 1192451 1192786 R KEGG: bam:Bamb_1086 hypothetical protein; hypothetical protein complement(1192451..1192786) Burkholderia ambifaria MC40-6 6178950 YP_001807794.1 CDS BamMC406_1087 NC_010551.1 1192980 1193408 D KEGG: bam:Bamb_1087 hypothetical protein; hypothetical protein 1192980..1193408 Burkholderia ambifaria MC40-6 6178944 YP_001807795.1 CDS BamMC406_1088 NC_010551.1 1193501 1193956 D PFAM: protein of unknown function UPF0074; KEGG: bam:Bamb_1088 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 1193501..1193956 Burkholderia ambifaria MC40-6 6178993 YP_001807796.1 CDS BamMC406_1089 NC_010551.1 1194094 1194735 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: bam:Bamb_1089 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1194094..1194735 Burkholderia ambifaria MC40-6 6178964 YP_001807797.1 CDS BamMC406_1090 NC_010551.1 1195048 1195518 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_1090 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1195048..1195518 Burkholderia ambifaria MC40-6 6179015 YP_001807798.1 CDS BamMC406_1091 NC_010551.1 1195565 1196338 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1091 ABC transporter related; ABC transporter-like protein complement(1195565..1196338) Burkholderia ambifaria MC40-6 6179002 YP_001807799.1 CDS BamMC406_1092 NC_010551.1 1196343 1198019 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1092 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1196343..1198019) Burkholderia ambifaria MC40-6 6179058 YP_001807800.1 CDS BamMC406_1093 NC_010551.1 1198009 1199052 R PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_1093 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1198009..1199052) Burkholderia ambifaria MC40-6 6179074 YP_001807801.1 CDS BamMC406_1094 NC_010551.1 1199295 1199456 D KEGG: bam:Bamb_1094 hypothetical protein; hypothetical protein 1199295..1199456 Burkholderia ambifaria MC40-6 6179011 YP_001807802.1 CDS BamMC406_1095 NC_010551.1 1199613 1200980 R PFAM: amino acid permease-associated region; KEGG: bam:Bamb_1095 amino acid permease-associated region; amino acid permease-associated protein complement(1199613..1200980) Burkholderia ambifaria MC40-6 6179078 YP_001807803.1 CDS BamMC406_1096 NC_010551.1 1201288 1203579 R PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: bam:Bamb_1096 protein of unknown function DUF893, YccS/YhfK; hypothetical protein complement(1201288..1203579) Burkholderia ambifaria MC40-6 6177613 YP_001807804.1 CDS BamMC406_1097 NC_010551.1 1203760 1207098 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: bam:Bamb_1097 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 1203760..1207098 Burkholderia ambifaria MC40-6 6176490 YP_001807805.1 CDS BamMC406_1098 NC_010551.1 1207095 1210799 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: bam:Bamb_1098 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 1207095..1210799 Burkholderia ambifaria MC40-6 6177732 YP_001807806.1 CDS BamMC406_1099 NC_010551.1 1210796 1213117 D KEGG: bam:Bamb_1099 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; exodeoxyribonuclease V subunit alpha 1210796..1213117 Burkholderia ambifaria MC40-6 6177859 YP_001807807.1 CDS BamMC406_1100 NC_010551.1 1213114 1213518 D PFAM: Class I peptide chain release factor; KEGG: bam:Bamb_1100 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 1213114..1213518 Burkholderia ambifaria MC40-6 6177878 YP_001807808.1 CDS BamMC406_1101 NC_010551.1 1213570 1214850 R PFAM: EAL domain protein; KEGG: bam:Bamb_1101 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(1213570..1214850) Burkholderia ambifaria MC40-6 6177104 YP_001807809.1 CDS BamMC406_1102 NC_010551.1 1215366 1216292 R PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: bam:Bamb_1102 protein of unknown function DUF6, transmembrane; hypothetical protein complement(1215366..1216292) Burkholderia ambifaria MC40-6 6176606 YP_001807810.1 CDS BamMC406_1103 NC_010551.1 1216437 1216685 R KEGG: bam:Bamb_1103 hypothetical protein; hypothetical protein complement(1216437..1216685) Burkholderia ambifaria MC40-6 6176607 YP_001807811.1 CDS BamMC406_1104 NC_010551.1 1216886 1217098 R PFAM: 17 kDa surface antigen; KEGG: bam:Bamb_1104 17 kDa surface antigen; 17 kDa surface antigen complement(1216886..1217098) Burkholderia ambifaria MC40-6 6178180 YP_001807812.1 CDS BamMC406_1105 NC_010551.1 1217336 1219267 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(1217336..1219267) Burkholderia ambifaria MC40-6 6176617 YP_001807813.1 CDS BamMC406_1106 NC_010551.1 1219767 1220018 D TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: bam:Bamb_1106 hypothetical protein; pentapeptide MXKDX repeat-containing protein 1219767..1220018 Burkholderia ambifaria MC40-6 6176621 YP_001807814.1 CDS BamMC406_1107 NC_010551.1 1220113 1220745 D KEGG: bur:Bcep18194_A4333 cytochrome b561; cytochrome b561 1220113..1220745 Burkholderia ambifaria MC40-6 6176641 YP_001807815.1 CDS BamMC406_1108 NC_010551.1 1220775 1221563 D PFAM: oxidoreductase molybdopterin binding; KEGG: bch:Bcen2424_1225 oxidoreductase, molybdopterin binding; oxidoreductase molybdopterin binding 1220775..1221563 Burkholderia ambifaria MC40-6 6178246 YP_001807816.1 CDS BamMC406_1109 NC_010551.1 1221815 1223752 D KEGG: bam:Bamb_0636 carbohydrate-binding family V/XII; hypothetical protein 1221815..1223752 Burkholderia ambifaria MC40-6 6178068 YP_001807817.1 CDS BamMC406_1110 NC_010551.1 1224102 1225280 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_1111 protein of unknown function DUF6, transmembrane; hypothetical protein 1224102..1225280 Burkholderia ambifaria MC40-6 6176738 YP_001807818.1 CDS BamMC406_1111 NC_010551.1 1225302 1226501 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1112 major facilitator superfamily MFS_1; major facilitator transporter complement(1225302..1226501) Burkholderia ambifaria MC40-6 6177702 YP_001807819.1 CDS BamMC406_1112 NC_010551.1 1226737 1227561 R PFAM: metallophosphoesterase; KEGG: bam:Bamb_1113 metallophosphoesterase; metallophosphoesterase complement(1226737..1227561) Burkholderia ambifaria MC40-6 6177563 YP_001807820.1 CDS BamMC406_1113 NC_010551.1 1227600 1228631 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_1114 ABC transporter related; ABC transporter-like protein complement(1227600..1228631) Burkholderia ambifaria MC40-6 6177602 YP_001807821.1 CDS BamMC406_1114 NC_010551.1 1228656 1229552 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1115 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1228656..1229552) Burkholderia ambifaria MC40-6 6177636 YP_001807822.1 CDS BamMC406_1115 NC_010551.1 1229563 1230387 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1116 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1229563..1230387) Burkholderia ambifaria MC40-6 6177682 YP_001807823.1 CDS BamMC406_1116 NC_010551.1 1230405 1231490 R PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_1117 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1230405..1231490) Burkholderia ambifaria MC40-6 6177623 YP_001807824.1 CDS BamMC406_1117 NC_010551.1 1231491 1232516 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_1118 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(1231491..1232516) Burkholderia ambifaria MC40-6 6176404 YP_001807825.1 CDS BamMC406_1118 NC_010551.1 1233899 1235179 D PFAM: polysaccharide export protein; KEGG: bam:Bamb_6483 polysaccharide export protein; polysaccharide export protein 1233899..1235179 Burkholderia ambifaria MC40-6 6176401 YP_001807826.1 CDS BamMC406_1119 NC_010551.1 1235587 1236804 D KEGG: bam:Bamb_6484 ATP-grasp enzyme-like protein; ATP-grasp enzyme-like protein 1235587..1236804 Burkholderia ambifaria MC40-6 6176393 YP_001807827.1 CDS BamMC406_1120 NC_010551.1 1236791 1238059 D KEGG: bam:Bamb_6485 putative oxidoreductase; putative oxidoreductase 1236791..1238059 Burkholderia ambifaria MC40-6 6177551 YP_001807828.1 CDS BamMC406_1121 NC_010551.1 1238139 1239023 D PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_6486 polysaccharide deacetylase; polysaccharide deacetylase 1238139..1239023 Burkholderia ambifaria MC40-6 6176229 YP_001807829.1 CDS BamMC406_1122 NC_010551.1 1239196 1241538 D KEGG: bam:Bamb_6487 hypothetical protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide tyrosine-protein kinase 1239196..1241538 Burkholderia ambifaria MC40-6 6176182 YP_001807830.1 CDS BamMC406_1123 NC_010551.1 1241604 1242932 D PFAM: O-antigen polymerase; KEGG: bam:Bamb_6488 O-antigen polymerase; O-antigen polymerase 1241604..1242932 Burkholderia ambifaria MC40-6 6178604 YP_001807831.1 CDS BamMC406_1124 NC_010551.1 1242844 1244277 R KEGG: bam:Bamb_6489 hypothetical protein; hypothetical protein complement(1242844..1244277) Burkholderia ambifaria MC40-6 6179083 YP_001807832.1 CDS BamMC406_1125 NC_010551.1 1244261 1245505 R PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_6490 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1244261..1245505) Burkholderia ambifaria MC40-6 6176072 YP_001807833.1 CDS BamMC406_1126 NC_010551.1 1246171 1247253 D KEGG: bam:Bamb_6491 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 1246171..1247253 Burkholderia ambifaria MC40-6 6177060 YP_001807834.1 CDS BamMC406_1127 NC_010551.1 1247318 1248526 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_6492 glycosyl transferase, group 1; group 1 glycosyl transferase 1247318..1248526 Burkholderia ambifaria MC40-6 6176224 YP_001807835.1 CDS BamMC406_1128 NC_010551.1 1248528 1249907 D PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: bam:Bamb_6493 virulence factor MviN family protein; virulence factor MVIN family protein 1248528..1249907 Burkholderia ambifaria MC40-6 6176264 YP_001807836.1 CDS BamMC406_1129 NC_010551.1 1250134 1251678 D KEGG: bam:Bamb_6494 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1250134..1251678 Burkholderia ambifaria MC40-6 6176375 YP_001807837.1 CDS BamMC406_1130 NC_010551.1 1251846 1252649 R SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bam:Bamb_6495 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(1251846..1252649) Burkholderia ambifaria MC40-6 6176336 YP_001807838.1 CDS BamMC406_1131 NC_010551.1 1253381 1254394 D KEGG: bam:Bamb_1120 hypothetical protein; hypothetical protein 1253381..1254394 Burkholderia ambifaria MC40-6 6176228 YP_001807839.1 CDS BamMC406_1132 NC_010551.1 1254730 1254876 D KEGG: bam:Bamb_1121 hypothetical protein; hypothetical protein 1254730..1254876 Burkholderia ambifaria MC40-6 6177909 YP_001807840.1 CDS BamMC406_1133 NC_010551.1 1255177 1255803 D KEGG: bam:Bamb_1122 hypothetical protein; hypothetical protein 1255177..1255803 Burkholderia ambifaria MC40-6 6177100 YP_001807841.1 CDS BamMC406_1134 NC_010551.1 1256192 1257424 D PFAM: dehydrogenase E1 component; KEGG: bam:Bamb_1123 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase 1256192..1257424 Burkholderia ambifaria MC40-6 6177796 YP_001807842.1 CDS BamMC406_1135 NC_010551.1 1257427 1258470 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: bam:Bamb_1124 transketolase, central region; transketolase central region 1257427..1258470 Burkholderia ambifaria MC40-6 6177660 YP_001807843.1 CDS BamMC406_1136 NC_010551.1 1258472 1259809 D PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: bam:Bamb_1125 branched-chain alpha-keto acid dehydrogenase subunit E2; branched-chain alpha-keto acid dehydrogenase subunit E2 1258472..1259809 Burkholderia ambifaria MC40-6 6177133 YP_001807844.1 CDS BamMC406_1137 NC_010551.1 1259815 1261206 D E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1259815..1261206 Burkholderia ambifaria MC40-6 6176119 YP_001807845.1 CDS BamMC406_1138 NC_010551.1 1261474 1262106 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: bam:Bamb_1127 nucleoside-diphosphate-sugar epimerase-like protein; NAD-dependent epimerase/dehydratase 1261474..1262106 Burkholderia ambifaria MC40-6 6176115 YP_001807846.1 CDS BamMC406_1139 NC_010551.1 1262304 1263086 D PFAM: protein of unknown function DUF159; KEGG: bam:Bamb_1128 protein of unknown function DUF159; hypothetical protein 1262304..1263086 Burkholderia ambifaria MC40-6 6176086 YP_001807847.1 CDS BamMC406_1140 NC_010551.1 1263374 1264804 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bam:Bamb_1129 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 1263374..1264804 Burkholderia ambifaria MC40-6 6179026 YP_001807848.1 CDS BamMC406_1141 NC_010551.1 1265057 1266040 D PFAM: porin Gram-negative type; KEGG: bur:Bcep18194_A4384 outer membrane protein, (porin); porin 1265057..1266040 Burkholderia ambifaria MC40-6 6176791 YP_001807849.1 CDS BamMC406_1142 NC_010551.1 1266114 1267070 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1130 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1266114..1267070) Burkholderia ambifaria MC40-6 6177325 YP_001807850.1 CDS BamMC406_1143 NC_010551.1 1267257 1268567 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1131 major facilitator superfamily MFS_1; major facilitator transporter 1267257..1268567 Burkholderia ambifaria MC40-6 6177020 YP_001807851.1 CDS BamMC406_1144 NC_010551.1 1268598 1269869 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 1268598..1269869 Burkholderia ambifaria MC40-6 6176824 YP_001807852.1 CDS BamMC406_1145 NC_010551.1 1269895 1270917 D PFAM: histone deacetylase superfamily; KEGG: bam:Bamb_1133 histone deacetylase superfamily; histone deacetylase superfamily protein 1269895..1270917 Burkholderia ambifaria MC40-6 6176107 YP_001807853.1 CDS BamMC406_1146 NC_010551.1 1271038 1272243 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1134 major facilitator superfamily MFS_1; major facilitator transporter complement(1271038..1272243) Burkholderia ambifaria MC40-6 6177368 YP_001807854.1 CDS BamMC406_1147 NC_010551.1 1272788 1273699 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1135 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1272788..1273699) Burkholderia ambifaria MC40-6 6177244 YP_001807855.1 CDS BamMC406_1148 NC_010551.1 1273864 1274784 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bam:Bamb_1136 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 1273864..1274784 Burkholderia ambifaria MC40-6 6176961 YP_001807856.1 CDS BamMC406_1149 NC_010551.1 1274862 1275995 R KEGG: bam:Bamb_1137 hypothetical protein; hypothetical protein complement(1274862..1275995) Burkholderia ambifaria MC40-6 6176779 YP_001807857.1 CDS BamMC406_1150 NC_010551.1 1276144 1277037 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1138 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1276144..1277037) Burkholderia ambifaria MC40-6 6176920 YP_001807858.1 CDS BamMC406_1151 NC_010551.1 1277147 1277902 D PFAM: Integral membrane protein TerC; KEGG: bam:Bamb_1139 integral membrane protein TerC; integral membrane protein TerC 1277147..1277902 Burkholderia ambifaria MC40-6 6177127 YP_001807859.1 CDS BamMC406_1152 NC_010551.1 1277963 1278265 D KEGG: bam:Bamb_1140 hypothetical protein; hypothetical protein 1277963..1278265 Burkholderia ambifaria MC40-6 6176829 YP_001807860.1 CDS BamMC406_1153 NC_010551.1 1278373 1278789 R PFAM: heat shock protein Hsp20; KEGG: bam:Bamb_1141 heat shock protein HSP20; heat shock protein Hsp20 complement(1278373..1278789) Burkholderia ambifaria MC40-6 6176099 YP_001807861.1 CDS BamMC406_1154 NC_010551.1 1278806 1279246 R PFAM: heat shock protein Hsp20; KEGG: bam:Bamb_1142 heat shock protein HSP20; heat shock protein Hsp20 complement(1278806..1279246) Burkholderia ambifaria MC40-6 6176658 YP_001807862.1 CDS BamMC406_1155 NC_010551.1 1279491 1280408 D PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bam:Bamb_1143 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 1279491..1280408 Burkholderia ambifaria MC40-6 6176475 YP_001807863.1 CDS BamMC406_1156 NC_010551.1 1280416 1281264 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1144 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1280416..1281264) Burkholderia ambifaria MC40-6 6176547 YP_001807864.1 CDS BamMC406_1157 NC_010551.1 1281597 1281992 D TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: bvi:Bcep1808_1221 malonate transporter MadL subunit; malonate transporter subunit MadL 1281597..1281992 Burkholderia ambifaria MC40-6 6176979 YP_001807865.1 CDS BamMC406_1158 NC_010551.1 1282004 1282771 D TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: bam:Bamb_1146 malonate transporter, MadM subunit; malonate transporter subunit MadM 1282004..1282771 Burkholderia ambifaria MC40-6 6177403 YP_001807866.1 CDS BamMC406_1159 NC_010551.1 1282937 1284583 D TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: bam:Bamb_1147 hypothetical protein; malonate decarboxylase subunit alpha 1282937..1284583 Burkholderia ambifaria MC40-6 6176533 YP_001807867.1 CDS BamMC406_1160 NC_010551.1 1284594 1284908 D acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta 1284594..1284908 Burkholderia ambifaria MC40-6 6177379 YP_001807868.1 CDS BamMC406_1161 NC_010551.1 1284905 1285828 D The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta 1284905..1285828 Burkholderia ambifaria MC40-6 6176509 YP_001807869.1 CDS BamMC406_1162 NC_010551.1 1285956 1286663 D TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: bam:Bamb_1150 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma 1285956..1286663 Burkholderia ambifaria MC40-6 6177047 YP_001807870.1 CDS BamMC406_1163 NC_010551.1 1286650 1287318 D catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase 1286650..1287318 Burkholderia ambifaria MC40-6 6176729 YP_001807871.1 CDS BamMC406_1164 NC_010551.1 1287315 1288181 D KEGG: bam:Bamb_1152 triphosphoribosyl-dephospho-CoA synthase; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase MdcB; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase MdcB 1287315..1288181 Burkholderia ambifaria MC40-6 6177168 YP_001807872.1 CDS BamMC406_1165 NC_010551.1 1288178 1289110 D KEGG: bam:Bamb_1153 acyl-carrier-protein S-malonyltransferase; acyl-carrier-protein S-malonyltransferase 1288178..1289110 Burkholderia ambifaria MC40-6 6176665 YP_001807873.1 CDS BamMC406_1166 NC_010551.1 1289326 1289847 D KEGG: bam:Bamb_1154 hypothetical protein; hypothetical protein 1289326..1289847 Burkholderia ambifaria MC40-6 6176121 YP_001807874.1 CDS BamMC406_1167 NC_010551.1 1290026 1290694 D PFAM: phosphoribosyltransferase; KEGG: bam:Bamb_1155 phosphoribosyltransferase; phosphoribosyltransferase 1290026..1290694 Burkholderia ambifaria MC40-6 6177247 YP_001807875.1 CDS BamMC406_1168 NC_010551.1 1290681 1291904 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bam:Bamb_1156 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase complement(1290681..1291904) Burkholderia ambifaria MC40-6 6177413 YP_001807876.1 CDS BamMC406_1169 NC_010551.1 1292088 1292717 D PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_1157 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein 1292088..1292717 Burkholderia ambifaria MC40-6 6176618 YP_001807877.1 CDS BamMC406_1170 NC_010551.1 1293070 1293264 D KEGG: bam:Bamb_1158 hypothetical protein; hypothetical protein 1293070..1293264 Burkholderia ambifaria MC40-6 6177315 YP_001807878.1 CDS BamMC406_1171 NC_010551.1 1293376 1294851 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1159 general substrate transporter; general substrate transporter complement(1293376..1294851) Burkholderia ambifaria MC40-6 6176105 YP_001807879.1 CDS BamMC406_1172 NC_010551.1 1295397 1295729 D PFAM: protein of unknown function UPF0060; KEGG: bam:Bamb_1160 hypothetical protein; hypothetical protein 1295397..1295729 Burkholderia ambifaria MC40-6 6177059 YP_001807880.1 CDS BamMC406_1173 NC_010551.1 1295782 1296516 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(1295782..1296516) Burkholderia ambifaria MC40-6 6179101 YP_001807881.1 CDS BamMC406_1174 NC_010551.1 1296555 1296998 R PFAM: ribonuclease H; KEGG: bam:Bamb_1162 ribonuclease H; ribonuclease H complement(1296555..1296998) Burkholderia ambifaria MC40-6 6178963 YP_001807882.1 CDS BamMC406_1175 NC_010551.1 1296995 1297807 R PFAM: Methyltransferase type 11; KEGG: bam:Bamb_1163 methyltransferase type 11; type 11 methyltransferase complement(1296995..1297807) Burkholderia ambifaria MC40-6 6178952 YP_001807883.1 CDS BamMC406_1176 NC_010551.1 1297826 1298647 D KEGG: bvi:Bcep1808_1240 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 1297826..1298647 Burkholderia ambifaria MC40-6 6178925 YP_001807884.1 CDS BamMC406_1177 NC_010551.1 1298799 1300388 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: bam:Bamb_1165 lytic transglycosylase, catalytic; lytic transglycosylase 1298799..1300388 Burkholderia ambifaria MC40-6 6178847 YP_001807885.1 CDS BamMC406_1178 NC_010551.1 1300548 1301780 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1166 major facilitator superfamily MFS_1; major facilitator transporter 1300548..1301780 Burkholderia ambifaria MC40-6 6176663 YP_001807886.1 CDS BamMC406_1179 NC_010551.1 1302144 1303289 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1302144..1303289 Burkholderia ambifaria MC40-6 6178842 YP_001807887.1 CDS BamMC406_1180 NC_010551.1 1303327 1303998 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_1168 leucine export protein LeuE; leucine export protein LeuE 1303327..1303998 Burkholderia ambifaria MC40-6 6178824 YP_001807888.1 CDS carB NC_010551.1 1304059 1307313 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1304059..1307313 Burkholderia ambifaria MC40-6 6178800 YP_001807889.1 CDS greA NC_010551.1 1307432 1307908 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1307432..1307908 Burkholderia ambifaria MC40-6 6178792 YP_001807890.1 CDS BamMC406_1183 NC_010551.1 1307923 1308381 D KEGG: bam:Bamb_1171 hypothetical protein; hypothetical protein 1307923..1308381 Burkholderia ambifaria MC40-6 6178763 YP_001807891.1 CDS BamMC406_1184 NC_010551.1 1308437 1308964 R PFAM: protein of unknown function UPF0044; KEGG: bam:Bamb_1172 protein of unknown function UPF0044; hypothetical protein complement(1308437..1308964) Burkholderia ambifaria MC40-6 6178732 YP_001807892.1 CDS BamMC406_1185 NC_010551.1 1309158 1309820 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: bam:Bamb_1173 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 1309158..1309820 Burkholderia ambifaria MC40-6 6178641 YP_001807893.1 CDS BamMC406_1186 NC_010551.1 1309988 1311883 D KEGG: bam:Bamb_1174 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1309988..1311883 Burkholderia ambifaria MC40-6 6178625 YP_001807894.1 CDS BamMC406_1187 NC_010551.1 1311912 1312853 D KEGG: bam:Bamb_1175 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 1311912..1312853 Burkholderia ambifaria MC40-6 6178589 YP_001807895.1 CDS glmM NC_010551.1 1312890 1314245 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1312890..1314245 Burkholderia ambifaria MC40-6 6178518 YP_001807896.1 CDS BamMC406_1189 NC_010551.1 1314703 1315737 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_1177 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate ABC transporter substrate-binding protein 1314703..1315737 Burkholderia ambifaria MC40-6 6178506 YP_001807897.1 CDS pstC NC_010551.1 1315832 1316818 D part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 1315832..1316818 Burkholderia ambifaria MC40-6 6178498 YP_001807898.1 CDS pstA NC_010551.1 1316815 1317708 D Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 1316815..1317708 Burkholderia ambifaria MC40-6 6178489 YP_001807899.1 CDS pstB NC_010551.1 1317724 1318572 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1317724..1318572 Burkholderia ambifaria MC40-6 6178413 YP_001807900.1 CDS BamMC406_1193 NC_010551.1 1318591 1319295 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: bam:Bamb_1181 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 1318591..1319295 Burkholderia ambifaria MC40-6 6178364 YP_001807901.1 CDS BamMC406_1194 NC_010551.1 1319325 1320026 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_1182 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1319325..1320026 Burkholderia ambifaria MC40-6 6178360 YP_001807902.1 CDS BamMC406_1195 NC_010551.1 1320084 1321403 D TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_1183 histidine kinase; histidine kinase 1320084..1321403 Burkholderia ambifaria MC40-6 6178312 YP_001807903.1 CDS BamMC406_1196 NC_010551.1 1321522 1323585 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(1321522..1323585) Burkholderia ambifaria MC40-6 6178329 YP_001807904.1 CDS BamMC406_1197 NC_010551.1 1323865 1325379 D PFAM: Ppx/GppA phosphatase; KEGG: bam:Bamb_1185 Ppx/GppA phosphatase; Ppx/GppA phosphatase 1323865..1325379 Burkholderia ambifaria MC40-6 6178287 YP_001807905.1 CDS BamMC406_1198 NC_010551.1 1325449 1325880 R KEGG: bam:Bamb_1186 hypothetical protein; hypothetical protein complement(1325449..1325880) Burkholderia ambifaria MC40-6 6178267 YP_001807906.1 CDS BamMC406_1199 NC_010551.1 1326345 1327349 R KEGG: reu:Reut_C5936 transposase, IS4; transposase, IS4 complement(1326345..1327349) Burkholderia ambifaria MC40-6 6178234 YP_001807907.1 CDS BamMC406_1200 NC_010551.1 1327601 1328458 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_6847 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1327601..1328458) Burkholderia ambifaria MC40-6 6178188 YP_001807908.1 CDS BamMC406_1201 NC_010551.1 1328581 1329450 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_6846 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1328581..1329450) Burkholderia ambifaria MC40-6 6178186 YP_001807909.1 CDS BamMC406_1202 NC_010551.1 1329437 1330357 R KEGG: bch:Bcen2424_6845 hypothetical protein; hypothetical protein complement(1329437..1330357) Burkholderia ambifaria MC40-6 6178139 YP_001807910.1 CDS BamMC406_1203 NC_010551.1 1330453 1331064 D PFAM: regulatory protein TetR; KEGG: bch:Bcen2424_6844 transcriptional regulator, TetR family; TetR family transcriptional regulator 1330453..1331064 Burkholderia ambifaria MC40-6 6177980 YP_001807911.1 CDS BamMC406_1204 NC_010551.1 1331508 1332371 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_1490 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 1331508..1332371 Burkholderia ambifaria MC40-6 6177973 YP_001807912.1 CDS BamMC406_1205 NC_010551.1 1332368 1333120 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_B1028 putative 3-oxoacyl-(acyl-carrier protein) reductase; short-chain dehydrogenase/reductase SDR 1332368..1333120 Burkholderia ambifaria MC40-6 6177948 YP_001807913.1 CDS BamMC406_1206 NC_010551.1 1333197 1334525 D PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1029 major facilitator superfamily (MFS) metabolite/H+ symporter; major facilitator transporter 1333197..1334525 Burkholderia ambifaria MC40-6 6177902 YP_001807914.1 CDS BamMC406_1207 NC_010551.1 1334556 1335734 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bxe:Bxe_B1030 putative mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 1334556..1335734 Burkholderia ambifaria MC40-6 6177944 YP_001807915.1 CDS BamMC406_1208 NC_010551.1 1335755 1336537 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B1031 putative short-chain alcohol dehydrogenase; short-chain dehydrogenase/reductase SDR 1335755..1336537 Burkholderia ambifaria MC40-6 6177879 YP_001807916.1 CDS BamMC406_1209 NC_010551.1 1336567 1337511 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B1032 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1336567..1337511) Burkholderia ambifaria MC40-6 6177813 YP_001807917.1 CDS BamMC406_1210 NC_010551.1 1337645 1337959 D TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: bch:Bcen2424_6634 L-rhamnose 1-epimerase; L-rhamnose 1-epimerase 1337645..1337959 Burkholderia ambifaria MC40-6 6177788 YP_001807918.1 CDS BamMC406_1211 NC_010551.1 1337980 1338879 D PFAM: amidohydrolase 2; KEGG: bxe:Bxe_B1034 hypothetical protein; amidohydrolase 2 1337980..1338879 Burkholderia ambifaria MC40-6 6177709 YP_001807919.1 CDS BamMC406_1212 NC_010551.1 1338942 1340477 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B1035 ABC sugar transporter, ATPase subunit; ABC transporter-like protein 1338942..1340477 Burkholderia ambifaria MC40-6 6177696 YP_001807920.1 CDS BamMC406_1213 NC_010551.1 1340474 1341520 D PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B1036 ABC sugar transporter, inner membrane subunit; monosaccharide-transporting ATPase 1340474..1341520 Burkholderia ambifaria MC40-6 6177683 YP_001807921.1 CDS BamMC406_1214 NC_010551.1 1341513 1342514 D PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B1037 ABC sugar transporter, inner membrane subunit; monosaccharide-transporting ATPase 1341513..1342514 Burkholderia ambifaria MC40-6 6177666 YP_001807922.1 CDS BamMC406_1215 NC_010551.1 1342596 1343603 D TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: bxe:Bxe_B1038 ABC sugar transporter, periplasmic ligand binding protein; rhamnose ABC transporter periplasmic rhamnose-binding protein 1342596..1343603 Burkholderia ambifaria MC40-6 6177672 YP_001807923.1 CDS BamMC406_1216 NC_010551.1 1343734 1346304 D PFAM: alpha-L-rhamnosidase; KEGG: bch:Bcen2424_0168 alpha-L-rhamnosidase; alpha-L-rhamnosidase 1343734..1346304 Burkholderia ambifaria MC40-6 6177652 YP_001807924.1 CDS BamMC406_1217 NC_010551.1 1346562 1347014 D hypothetical protein 1346562..1347014 Burkholderia ambifaria MC40-6 6177628 YP_001807925.1 CDS BamMC406_1218 NC_010551.1 1347133 1347432 D hypothetical protein 1347133..1347432 Burkholderia ambifaria MC40-6 6177610 YP_001807926.1 CDS BamMC406_1219 NC_010551.1 1347665 1348177 D KEGG: vvy:VV1861 hypothetical protein; hypothetical protein 1347665..1348177 Burkholderia ambifaria MC40-6 6177608 YP_001807927.1 CDS BamMC406_1220 NC_010551.1 1348928 1349389 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: bam:Bamb_1195 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 1348928..1349389 Burkholderia ambifaria MC40-6 6177560 YP_001807928.1 CDS BamMC406_1221 NC_010551.1 1349549 1350355 D KEGG: bam:Bamb_1196 putative hemolysin-like protein; putative hemolysin-like protein 1349549..1350355 Burkholderia ambifaria MC40-6 6177473 YP_001807929.1 CDS BamMC406_1222 NC_010551.1 1350567 1350737 R KEGG: bam:Bamb_1197 hypothetical protein; hypothetical protein complement(1350567..1350737) Burkholderia ambifaria MC40-6 6177514 YP_001807930.1 CDS BamMC406_1223 NC_010551.1 1350876 1351058 D KEGG: bam:Bamb_1198 hypothetical protein; hypothetical protein 1350876..1351058 Burkholderia ambifaria MC40-6 6177464 YP_001807931.1 CDS BamMC406_1224 NC_010551.1 1351078 1352448 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bam:Bamb_1199 MATE efflux family protein; MATE efflux family protein complement(1351078..1352448) Burkholderia ambifaria MC40-6 6177407 YP_001807932.1 CDS BamMC406_1225 NC_010551.1 1352459 1352785 R KEGG: bam:Bamb_1200 uncharacterized small conserved protein; hypothetical protein complement(1352459..1352785) Burkholderia ambifaria MC40-6 6177406 YP_001807933.1 CDS BamMC406_1226 NC_010551.1 1352867 1354486 R PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_1201 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1352867..1354486) Burkholderia ambifaria MC40-6 6177349 YP_001807934.1 CDS BamMC406_1227 NC_010551.1 1354664 1354783 D KEGG: bmu:Bmul_1991 hypothetical protein; hypothetical protein 1354664..1354783 Burkholderia ambifaria MC40-6 6177337 YP_001807935.1 CDS BamMC406_1228 NC_010551.1 1354863 1355555 R PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: bam:Bamb_1202 peptidase M23B; peptidase M23 complement(1354863..1355555) Burkholderia ambifaria MC40-6 6177320 YP_001807936.1 CDS BamMC406_1229 NC_010551.1 1355676 1356587 R PFAM: Aldose 1-epimerase; KEGG: bam:Bamb_1203 aldose 1-epimerase; aldose 1-epimerase complement(1355676..1356587) Burkholderia ambifaria MC40-6 6177271 YP_001807937.1 CDS BamMC406_1230 NC_010551.1 1356745 1356852 D KEGG: bxe:Bxe_A1298 hypothetical protein; hypothetical protein 1356745..1356852 Burkholderia ambifaria MC40-6 6177263 YP_001807938.1 CDS BamMC406_1231 NC_010551.1 1357074 1357904 D phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1357074..1357904 Burkholderia ambifaria MC40-6 6177253 YP_001807939.1 CDS BamMC406_1232 NC_010551.1 1358721 1360166 R PFAM: transcriptional regulator domain protein; KEGG: bvi:Bcep1808_5664 transcriptional regulator, winged helix family; transcriptional regulator complement(1358721..1360166) Burkholderia ambifaria MC40-6 6177084 YP_001807940.1 CDS BamMC406_1233 NC_010551.1 1360512 1361192 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bvi:Bcep1808_5665 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1360512..1361192 Burkholderia ambifaria MC40-6 6177214 YP_001807941.1 CDS BamMC406_1234 NC_010551.1 1361223 1366214 D PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; SMART: serine/threonine protein kinase; KEGG: bvi:Bcep1808_5666 histidine kinase, dimerisation/phosphoacceptor; histidine kinase dimerisation/phosphoacceptor 1361223..1366214 Burkholderia ambifaria MC40-6 6177056 YP_001807942.1 CDS BamMC406_1235 NC_010551.1 1366227 1369196 D KEGG: bvi:Bcep1808_5667 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1366227..1369196 Burkholderia ambifaria MC40-6 6178201 YP_001807943.1 CDS BamMC406_1236 NC_010551.1 1369199 1370359 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bvi:Bcep1808_5668 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 1369199..1370359 Burkholderia ambifaria MC40-6 6177097 YP_001807944.1 CDS BamMC406_1237 NC_010551.1 1371333 1371989 D KEGG: bam:Bamb_1210 hypothetical protein; hypothetical protein 1371333..1371989 Burkholderia ambifaria MC40-6 6177223 YP_001807945.1 CDS BamMC406_1238 NC_010551.1 1372074 1372409 D KEGG: bam:Bamb_1211 hypothetical protein; hypothetical protein 1372074..1372409 Burkholderia ambifaria MC40-6 6176913 YP_001807946.1 CDS BamMC406_1239 NC_010551.1 1372606 1372974 D KEGG: bam:Bamb_1212 hypothetical protein; hypothetical protein 1372606..1372974 Burkholderia ambifaria MC40-6 6176871 YP_001807947.1 CDS BamMC406_1240 NC_010551.1 1373173 1373496 D KEGG: bam:Bamb_1213 hypothetical protein; hypothetical protein 1373173..1373496 Burkholderia ambifaria MC40-6 6176855 YP_001807948.2 CDS BamMC406_1241 NC_010551.1 1373575 1374249 R PFAM: cyclic nucleotide-binding; KEGG: bam:Bamb_1214 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(1373575..1374249) Burkholderia ambifaria MC40-6 6176479 YP_001807949.1 CDS BamMC406_1242 NC_010551.1 1374656 1375213 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: bam:Bamb_1215 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1374656..1375213 Burkholderia ambifaria MC40-6 6176851 YP_001807950.1 CDS BamMC406_1243 NC_010551.1 1375328 1375633 D KEGG: bur:Bcep18194_C6983 hypothetical protein; hypothetical protein 1375328..1375633 Burkholderia ambifaria MC40-6 6176850 YP_001807951.1 CDS BamMC406_1244 NC_010551.1 1375663 1376280 D KEGG: bam:Bamb_1217 hypothetical protein; hypothetical protein 1375663..1376280 Burkholderia ambifaria MC40-6 6176843 YP_001807952.1 CDS BamMC406_1245 NC_010551.1 1376660 1377106 D KEGG: bam:Bamb_1218 hypothetical protein; hypothetical protein 1376660..1377106 Burkholderia ambifaria MC40-6 6178148 YP_001807953.1 CDS BamMC406_1246 NC_010551.1 1377201 1377542 R KEGG: bam:Bamb_1219 hypothetical protein; hypothetical protein complement(1377201..1377542) Burkholderia ambifaria MC40-6 6178146 YP_001807954.1 CDS BamMC406_1247 NC_010551.1 1377851 1379374 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: bam:Bamb_1221 altronate dehydratase; altronate dehydratase complement(1377851..1379374) Burkholderia ambifaria MC40-6 6176835 YP_001807955.1 CDS BamMC406_1248 NC_010551.1 1379371 1380531 R PFAM: Mannitol dehydrogenase domain; KEGG: bam:Bamb_1222 mannitol dehydrogenase, C-terminal domain; mannitol dehydrogenase domain-containing protein complement(1379371..1380531) Burkholderia ambifaria MC40-6 6176825 YP_001807956.1 CDS BamMC406_1249 NC_010551.1 1380556 1381563 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_1223 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(1380556..1381563) Burkholderia ambifaria MC40-6 6176789 YP_001807957.1 CDS BamMC406_1250 NC_010551.1 1381577 1382449 R PFAM: amidohydrolase 2; KEGG: bam:Bamb_1224 amidohydrolase 2; amidohydrolase 2 complement(1381577..1382449) Burkholderia ambifaria MC40-6 6176782 YP_001807958.1 CDS BamMC406_1251 NC_010551.1 1382446 1383417 R PFAM: aldo/keto reductase; KEGG: bam:Bamb_1225 aldo/keto reductase; pyridoxal 4-dehydrogenase complement(1382446..1383417) Burkholderia ambifaria MC40-6 6176775 YP_001807959.1 CDS BamMC406_1252 NC_010551.1 1383531 1384478 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_1226 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(1383531..1384478) Burkholderia ambifaria MC40-6 6177481 YP_001807960.1 CDS BamMC406_1253 NC_010551.1 1384518 1385567 R PFAM: inner-membrane translocator; KEGG: bam:Bamb_1227 inner-membrane translocator; monosaccharide-transporting ATPase complement(1384518..1385567) Burkholderia ambifaria MC40-6 6177520 YP_001807961.1 CDS BamMC406_1254 NC_010551.1 1385542 1387089 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1228 ABC transporter related; ABC transporter-like protein complement(1385542..1387089) Burkholderia ambifaria MC40-6 6177479 YP_001807962.1 CDS BamMC406_1255 NC_010551.1 1387329 1388033 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_1229 GntR domain protein; GntR family transcriptional regulator 1387329..1388033 Burkholderia ambifaria MC40-6 6177490 YP_001807963.1 CDS BamMC406_1256 NC_010551.1 1388436 1388897 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_1231 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1388436..1388897 Burkholderia ambifaria MC40-6 6177545 YP_001807964.1 CDS BamMC406_1257 NC_010551.1 1388894 1391218 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_1232 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 1388894..1391218 Burkholderia ambifaria MC40-6 6177543 YP_001807965.1 CDS BamMC406_1258 NC_010551.1 1391653 1393482 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bam:Bamb_1233 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1391653..1393482 Burkholderia ambifaria MC40-6 6177474 YP_001807966.1 CDS BamMC406_1259 NC_010551.1 1393609 1394589 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_1234 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 1393609..1394589 Burkholderia ambifaria MC40-6 6177508 YP_001807967.1 CDS BamMC406_1260 NC_010551.1 1394685 1396055 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_1235 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1394685..1396055) Burkholderia ambifaria MC40-6 6177537 YP_001807968.1 CDS BamMC406_1261 NC_010551.1 1396056 1396781 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_1236 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(1396056..1396781) Burkholderia ambifaria MC40-6 6177542 YP_001807969.1 CDS BamMC406_1262 NC_010551.1 1397028 1397774 D PFAM: MltA-interacting MipA family protein; KEGG: bam:Bamb_1237 MltA-interacting MipA family protein; MltA-interacting MipA family protein 1397028..1397774 Burkholderia ambifaria MC40-6 6177523 YP_001807970.1 CDS BamMC406_1263 NC_010551.1 1398114 1398368 D KEGG: bam:Bamb_1238 hypothetical protein; hypothetical protein 1398114..1398368 Burkholderia ambifaria MC40-6 6177491 YP_001807971.1 CDS BamMC406_1264 NC_010551.1 1398365 1398496 D hypothetical protein 1398365..1398496 Burkholderia ambifaria MC40-6 6177477 YP_001807972.1 CDS BamMC406_1265 NC_010551.1 1398442 1399665 R PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_1239 lytic transglycosylase, catalytic; lytic transglycosylase complement(1398442..1399665) Burkholderia ambifaria MC40-6 6177544 YP_001807973.1 CDS BamMC406_1266 NC_010551.1 1400114 1401274 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_1240 porin, gram-negative type; porin complement(1400114..1401274) Burkholderia ambifaria MC40-6 6177550 YP_001807974.1 CDS BamMC406_1267 NC_010551.1 1401556 1401765 D KEGG: bam:Bamb_1241 hypothetical protein; hypothetical protein 1401556..1401765 Burkholderia ambifaria MC40-6 6177555 YP_001807975.1 CDS BamMC406_1268 NC_010551.1 1401887 1402243 D KEGG: bam:Bamb_1242 flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 1401887..1402243 Burkholderia ambifaria MC40-6 6177540 YP_001807976.1 CDS BamMC406_1269 NC_010551.1 1402284 1403180 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1243 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1402284..1403180) Burkholderia ambifaria MC40-6 6177576 YP_001807977.1 CDS BamMC406_1270 NC_010551.1 1403278 1404576 D TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; KEGG: bam:Bamb_1244 citrate/H+ symporter, CitMHS family; CitMHS family citrate/H+ symporter 1403278..1404576 Burkholderia ambifaria MC40-6 6177571 YP_001807978.1 CDS BamMC406_1271 NC_010551.1 1404613 1405974 D PFAM: protein of unknown function DUF1446; KEGG: bam:Bamb_1245 protein of unknown function DUF1446; hypothetical protein 1404613..1405974 Burkholderia ambifaria MC40-6 6177539 YP_001807979.1 CDS BamMC406_1272 NC_010551.1 1405974 1406285 D KEGG: bam:Bamb_1246 hypothetical protein; hypothetical protein 1405974..1406285 Burkholderia ambifaria MC40-6 6177579 YP_001807980.1 CDS BamMC406_1273 NC_010551.1 1406570 1408399 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_1247 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1406570..1408399 Burkholderia ambifaria MC40-6 6178052 YP_001807981.1 CDS BamMC406_1274 NC_010551.1 1408522 1409370 D KEGG: bam:Bamb_1249 hypothetical protein; hypothetical protein 1408522..1409370 Burkholderia ambifaria MC40-6 6178038 YP_001807982.1 CDS BamMC406_1275 NC_010551.1 1409430 1410359 R PFAM: phosphatidate cytidylyltransferase; KEGG: bam:Bamb_1250 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(1409430..1410359) Burkholderia ambifaria MC40-6 6178065 YP_001807983.1 CDS BamMC406_1276 NC_010551.1 1410396 1411043 R PFAM: phospholipid/glycerol acyltransferase; KEGG: bam:Bamb_1251 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1410396..1411043) Burkholderia ambifaria MC40-6 6178058 YP_001807984.1 CDS BamMC406_1277 NC_010551.1 1411495 1412100 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bam:Bamb_1252 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1411495..1412100 Burkholderia ambifaria MC40-6 6178059 YP_001807985.1 CDS BamMC406_1278 NC_010551.1 1412139 1413938 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_1253 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1412139..1413938 Burkholderia ambifaria MC40-6 6178043 YP_001807986.1 CDS BamMC406_1279 NC_010551.1 1413935 1415338 D PFAM: Dual specificity protein phosphatase; KEGG: bam:Bamb_1254 dual specificity protein phosphatase; dual specificity protein phosphatase 1413935..1415338 Burkholderia ambifaria MC40-6 6177965 YP_001807987.1 CDS BamMC406_1280 NC_010551.1 1415338 1415790 D KEGG: bam:Bamb_1255 hypothetical protein; hypothetical protein 1415338..1415790 Burkholderia ambifaria MC40-6 6178030 YP_001807988.1 CDS BamMC406_1281 NC_010551.1 1416030 1418561 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bvi:Bcep1808_1193 rhs element Vgr protein; ImpA family type VI secretion-associated protein 1416030..1418561 Burkholderia ambifaria MC40-6 6178026 YP_001807989.1 CDS BamMC406_1282 NC_010551.1 1418564 1419586 D KEGG: bvi:Bcep1808_1194 hypothetical protein; hypothetical protein 1418564..1419586 Burkholderia ambifaria MC40-6 6178025 YP_001807990.1 CDS BamMC406_1283 NC_010551.1 1419592 1422426 D KEGG: bte:BTH_I2691 hypothetical protein; hypothetical protein 1419592..1422426 Burkholderia ambifaria MC40-6 6178002 YP_001807991.1 CDS BamMC406_1284 NC_010551.1 1422423 1423160 D KEGG: bvi:Bcep1808_1197 hypothetical protein; hypothetical protein 1422423..1423160 Burkholderia ambifaria MC40-6 6177998 YP_001807992.1 CDS BamMC406_1285 NC_010551.1 1423186 1423632 D KEGG: bvi:Bcep1808_1197 hypothetical protein; hypothetical protein 1423186..1423632 Burkholderia ambifaria MC40-6 6177987 YP_001807993.1 CDS BamMC406_1287 NC_010551.1 1423993 1424613 D KEGG: xom:XOO_2914 hypothetical protein; hypothetical protein 1423993..1424613 Burkholderia ambifaria MC40-6 6177952 YP_001807994.1 CDS BamMC406_1288 NC_010551.1 1424653 1424904 D PFAM: PAAR repeat-containing protein; KEGG: bvi:Bcep1808_1198 PaaR repeat-containing protein; PAAR repeat-containing protein 1424653..1424904 Burkholderia ambifaria MC40-6 6177939 YP_001807995.1 CDS BamMC406_1289 NC_010551.1 1424959 1426770 R TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bvi:Bcep1808_1199 protein of unknown function DUF879; type VI secretion protein complement(1424959..1426770) Burkholderia ambifaria MC40-6 6177953 YP_001807996.1 CDS BamMC406_1290 NC_010551.1 1426967 1428211 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: bch:Bcen2424_1378 diguanylate cyclase with GAF sensor; GAF sensor-containing diguanylate cyclase complement(1426967..1428211) Burkholderia ambifaria MC40-6 6177932 YP_001807997.1 CDS BamMC406_1291 NC_010551.1 1428493 1430787 D binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 1428493..1430787 Burkholderia ambifaria MC40-6 6177949 YP_001807998.1 CDS BamMC406_1292 NC_010551.1 1430791 1432011 D catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 1430791..1432011 Burkholderia ambifaria MC40-6 6177929 YP_001807999.1 CDS BamMC406_1293 NC_010551.1 1431996 1435943 D PFAM: TPR repeat-containing protein; cellulose synthase operon C domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_1260 cellulose synthase operon C domain protein; cellulose synthase domain-containing protein 1431996..1435943 Burkholderia ambifaria MC40-6 6177868 YP_001808000.1 CDS BamMC406_1294 NC_010551.1 1435957 1437924 D KEGG: bam:Bamb_1261 hypothetical protein; hypothetical protein 1435957..1437924 Burkholderia ambifaria MC40-6 6177941 YP_001808001.1 CDS BamMC406_1295 NC_010551.1 1437921 1438130 D KEGG: bch:Bcen2424_1383 hypothetical protein; hypothetical protein 1437921..1438130 Burkholderia ambifaria MC40-6 6177892 YP_001808002.1 CDS BamMC406_1296 NC_010551.1 1438127 1438915 D KEGG: bam:Bamb_1262 ATPases involved in chromosome partitioning-like protein; chromosome partitioning ATPase 1438127..1438915 Burkholderia ambifaria MC40-6 6177823 YP_001808003.1 CDS BamMC406_1297 NC_010551.1 1438912 1441449 D KEGG: bam:Bamb_1263 cellulose synthase (UDP-forming); TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; cellulose synthase catalytic subunit 1438912..1441449 Burkholderia ambifaria MC40-6 6176908 YP_001808004.1 CDS BamMC406_1298 NC_010551.1 1441477 1443027 D KEGG: bam:Bamb_1264 hypothetical protein; hypothetical protein 1441477..1443027 Burkholderia ambifaria MC40-6 6176520 YP_001808005.1 CDS BamMC406_1299 NC_010551.1 1443009 1443206 D KEGG: bvi:Bcep1808_1357 hypothetical protein; hypothetical protein 1443009..1443206 Burkholderia ambifaria MC40-6 6176504 YP_001808006.1 CDS BamMC406_1300 NC_010551.1 1443267 1444151 R PFAM: Pirin domain protein; KEGG: bam:Bamb_1266 pirin domain protein domain protein; pirin domain-containing protein complement(1443267..1444151) Burkholderia ambifaria MC40-6 6177911 YP_001808007.1 CDS BamMC406_1301 NC_010551.1 1444176 1444568 R PFAM: OsmC family protein; KEGG: bam:Bamb_1267 OsmC family protein; OsmC family protein complement(1444176..1444568) Burkholderia ambifaria MC40-6 6177903 YP_001808008.1 CDS BamMC406_1302 NC_010551.1 1444619 1446199 R TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bam:Bamb_1268 sodium/hydrogen exchanger; Na+/H+ antiporter complement(1444619..1446199) Burkholderia ambifaria MC40-6 6177863 YP_001808009.1 CDS BamMC406_1303 NC_010551.1 1446225 1446485 R PFAM: protein of unknown function DUF1427; KEGG: bam:Bamb_1269 protein of unknown function DUF1427; hypothetical protein complement(1446225..1446485) Burkholderia ambifaria MC40-6 6177883 YP_001808010.1 CDS BamMC406_1304 NC_010551.1 1446759 1447445 D PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_5810 isochorismatase hydrolase; isochorismatase hydrolase 1446759..1447445 Burkholderia ambifaria MC40-6 6177856 YP_001808011.1 CDS BamMC406_1305 NC_010551.1 1447516 1448439 R PFAM: regulatory protein LysR; helix-turn-helix Fis-type; LysR substrate-binding; KEGG: bam:Bamb_1271 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1447516..1448439) Burkholderia ambifaria MC40-6 6177828 YP_001808012.1 CDS BamMC406_1306 NC_010551.1 1448541 1448708 D KEGG: bam:Bamb_1272 hypothetical protein; hypothetical protein 1448541..1448708 Burkholderia ambifaria MC40-6 6177841 YP_001808013.1 CDS BamMC406_1307 NC_010551.1 1448728 1450620 D PFAM: Amidohydrolase 3; KEGG: bam:Bamb_1273 amidohydrolase 3; amidohydrolase 3 1448728..1450620 Burkholderia ambifaria MC40-6 6177836 YP_001808014.1 CDS BamMC406_1308 NC_010551.1 1450622 1451068 D PFAM: DoxX family protein; KEGG: bam:Bamb_1274 DoxX family protein; DoxX family protein 1450622..1451068 Burkholderia ambifaria MC40-6 6177830 YP_001808015.1 CDS BamMC406_1309 NC_010551.1 1451122 1452036 D KEGG: bam:Bamb_1275 hypothetical protein; hypothetical protein 1451122..1452036 Burkholderia ambifaria MC40-6 6176466 YP_001808016.1 CDS BamMC406_1310 NC_010551.1 1452033 1452728 D PFAM: protein of unknown function DUF1275; KEGG: bam:Bamb_1276 protein of unknown function DUF1275; hypothetical protein 1452033..1452728 Burkholderia ambifaria MC40-6 6177802 YP_001808017.1 CDS BamMC406_1311 NC_010551.1 1452725 1454269 D KEGG: bam:Bamb_1277 hypothetical protein; hypothetical protein 1452725..1454269 Burkholderia ambifaria MC40-6 6176463 YP_001808018.1 CDS BamMC406_1312 NC_010551.1 1454373 1455959 R TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: bch:Bcen2424_1401 phosphoesterase; acid phosphatase complement(1454373..1455959) Burkholderia ambifaria MC40-6 6177798 YP_001808019.1 CDS BamMC406_1313 NC_010551.1 1456219 1457526 D PFAM: Di-haem cytochrome c peroxidase; KEGG: bch:Bcen2424_1402 di-haem cytochrome c peroxidase; di-heme cytochrome c peroxidase 1456219..1457526 Burkholderia ambifaria MC40-6 6177812 YP_001808020.1 CDS BamMC406_1314 NC_010551.1 1457668 1458054 D KEGG: bam:Bamb_1280 hypothetical protein; hypothetical protein 1457668..1458054 Burkholderia ambifaria MC40-6 6177808 YP_001808021.1 CDS BamMC406_1315 NC_010551.1 1458065 1458535 D PFAM: NUDIX hydrolase; KEGG: bam:Bamb_1281 NUDIX hydrolase; NUDIX hydrolase 1458065..1458535 Burkholderia ambifaria MC40-6 6177797 YP_001808022.1 CDS BamMC406_1316 NC_010551.1 1458648 1460357 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(1458648..1460357) Burkholderia ambifaria MC40-6 6177791 YP_001808023.1 CDS BamMC406_1317 NC_010551.1 1460610 1460819 D KEGG: bch:Bcen2424_1406 hypothetical protein; hypothetical protein 1460610..1460819 Burkholderia ambifaria MC40-6 6177786 YP_001808024.1 CDS BamMC406_1318 NC_010551.1 1461015 1461569 D PFAM: protein of unknown function DUF1234; KEGG: bch:Bcen2424_1407 protein of unknown function DUF1234; hypothetical protein 1461015..1461569 Burkholderia ambifaria MC40-6 6177770 YP_001808025.1 CDS BamMC406_1319 NC_010551.1 1461780 1462208 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rso:RSc0095 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1461780..1462208 Burkholderia ambifaria MC40-6 6177769 YP_001808026.1 CDS BamMC406_1320 NC_010551.1 1462250 1462786 D KEGG: rso:RSc0094 putative lipoprotein transmembrane; putative lipoprotein transmembrane 1462250..1462786 Burkholderia ambifaria MC40-6 6177749 YP_001808027.1 CDS BamMC406_1321 NC_010551.1 1462827 1464047 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_1285 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(1462827..1464047) Burkholderia ambifaria MC40-6 6177751 YP_001808028.1 CDS BamMC406_1322 NC_010551.1 1464432 1464881 D KEGG: bte:BTH_I1830 hypothetical protein; hypothetical protein 1464432..1464881 Burkholderia ambifaria MC40-6 6177750 YP_001808029.1 CDS BamMC406_1323 NC_010551.1 1464878 1465075 D hypothetical protein 1464878..1465075 Burkholderia ambifaria MC40-6 6177735 YP_001808030.1 CDS alaS NC_010551.1 1465397 1468021 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1465397..1468021 Burkholderia ambifaria MC40-6 6177761 YP_001808031.1 CDS BamMC406_1327 NC_010551.1 1470800 1472830 D PFAM: phospholipase D/Transphosphatidylase; KEGG: bur:Bcep18194_B2998 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1470800..1472830 Burkholderia ambifaria MC40-6 6177727 YP_001808032.1 CDS BamMC406_1328 NC_010551.1 1472844 1474490 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: bur:Bcep18194_B2997 hypothetical protein; Sel1 domain-containing protein 1472844..1474490 Burkholderia ambifaria MC40-6 6177716 YP_001808033.1 CDS BamMC406_1329 NC_010551.1 1474691 1475605 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A4554 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1474691..1475605) Burkholderia ambifaria MC40-6 6177703 YP_001808034.1 CDS BamMC406_1330 NC_010551.1 1475730 1476971 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1291 protein of unknown function DUF1228; hypothetical protein 1475730..1476971 Burkholderia ambifaria MC40-6 6177700 YP_001808035.1 CDS BamMC406_1331 NC_010551.1 1477091 1477627 D PFAM: NUDIX hydrolase; KEGG: bam:Bamb_1292 NUDIX hydrolase; NUDIX hydrolase 1477091..1477627 Burkholderia ambifaria MC40-6 6177693 YP_001808036.1 CDS BamMC406_1332 NC_010551.1 1477758 1478195 D PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_1293 thioesterase superfamily protein; thioesterase superfamily protein 1477758..1478195 Burkholderia ambifaria MC40-6 6177692 YP_001808037.1 CDS BamMC406_1333 NC_010551.1 1478209 1479147 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_1294 inner-membrane translocator; inner-membrane translocator 1478209..1479147 Burkholderia ambifaria MC40-6 6177680 YP_001808038.1 CDS BamMC406_1334 NC_010551.1 1479140 1480366 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_1295 inner-membrane translocator; inner-membrane translocator 1479140..1480366 Burkholderia ambifaria MC40-6 6177639 YP_001808039.1 CDS BamMC406_1335 NC_010551.1 1480363 1481112 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1296 ABC transporter related; ABC transporter-like protein 1480363..1481112 Burkholderia ambifaria MC40-6 6177625 YP_001808040.1 CDS BamMC406_1336 NC_010551.1 1481109 1481813 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1297 ABC transporter related; ABC transporter-like protein 1481109..1481813 Burkholderia ambifaria MC40-6 6177615 YP_001808041.1 CDS BamMC406_1337 NC_010551.1 1481988 1482734 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_1298 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1481988..1482734 Burkholderia ambifaria MC40-6 6177582 YP_001808042.1 CDS BamMC406_1338 NC_010551.1 1482757 1483263 R PFAM: protein of unknown function DUF336; KEGG: bam:Bamb_1299 hypothetical protein; hypothetical protein complement(1482757..1483263) Burkholderia ambifaria MC40-6 6177559 YP_001808043.1 CDS BamMC406_1339 NC_010551.1 1483348 1484166 R PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bam:Bamb_1300 myo-inositol catabolism IolB domain protein; myo-inositol catabolism IolB domain-containing protein complement(1483348..1484166) Burkholderia ambifaria MC40-6 6177561 YP_001808044.1 CDS BamMC406_1340 NC_010551.1 1484210 1485139 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_1301 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(1484210..1485139) Burkholderia ambifaria MC40-6 6177516 YP_001808045.1 CDS BamMC406_1341 NC_010551.1 1485202 1487085 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bam:Bamb_1302 thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate protein central region complement(1485202..1487085) Burkholderia ambifaria MC40-6 6176376 YP_001808046.1 CDS BamMC406_1342 NC_010551.1 1487132 1489087 R PFAM: PfkB domain protein; KEGG: bam:Bamb_1303 PfkB domain protein; ribokinase-like domain-containing protein complement(1487132..1489087) Burkholderia ambifaria MC40-6 6177534 YP_001808047.1 CDS BamMC406_1343 NC_010551.1 1489396 1490322 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_1304 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1489396..1490322 Burkholderia ambifaria MC40-6 6176337 YP_001808048.1 CDS BamMC406_1344 NC_010551.1 1490391 1491965 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1305 ABC transporter related; ABC transporter-like protein 1490391..1491965 Burkholderia ambifaria MC40-6 6176360 YP_001808049.1 CDS BamMC406_1345 NC_010551.1 1491992 1493017 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_1306 inner-membrane translocator; monosaccharide-transporting ATPase 1491992..1493017 Burkholderia ambifaria MC40-6 6176310 YP_001808050.1 CDS BamMC406_1346 NC_010551.1 1493055 1493969 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_1307 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 1493055..1493969 Burkholderia ambifaria MC40-6 6176280 YP_001808051.1 CDS BamMC406_1347 NC_010551.1 1494033 1495046 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bam:Bamb_1308 inositol 2-dehydrogenase; inositol 2-dehydrogenase 1494033..1495046 Burkholderia ambifaria MC40-6 6176271 YP_001808052.1 CDS BamMC406_1348 NC_010551.1 1495105 1496031 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_1309 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 1495105..1496031 Burkholderia ambifaria MC40-6 6176189 YP_001808053.1 CDS BamMC406_1349 NC_010551.1 1496095 1497267 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bam:Bamb_1310 oxidoreductase domain protein; oxidoreductase domain-containing protein 1496095..1497267 Burkholderia ambifaria MC40-6 6176211 YP_001808054.1 CDS BamMC406_1350 NC_010551.1 1497528 1498412 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bam:Bamb_1311 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1497528..1498412 Burkholderia ambifaria MC40-6 6176237 YP_001808055.1 CDS BamMC406_1351 NC_010551.1 1498473 1499993 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_1312 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1498473..1499993) Burkholderia ambifaria MC40-6 6176166 YP_001808056.1 CDS BamMC406_1352 NC_010551.1 1500017 1501036 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1313 transcriptional regulator, LysR family; LysR family transcriptional regulator 1500017..1501036 Burkholderia ambifaria MC40-6 6176328 YP_001808057.1 CDS BamMC406_1353 NC_010551.1 1501168 1501395 D PFAM: SirA family protein; KEGG: bam:Bamb_1314 SirA family protein; SirA family protein 1501168..1501395 Burkholderia ambifaria MC40-6 6177478 YP_001808058.1 CDS BamMC406_1354 NC_010551.1 1501621 1502010 D KEGG: bam:Bamb_1315 hypothetical protein; hypothetical protein 1501621..1502010 Burkholderia ambifaria MC40-6 6176071 YP_001808059.1 CDS BamMC406_1355 NC_010551.1 1502358 1503062 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_1316 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1502358..1503062 Burkholderia ambifaria MC40-6 6176293 YP_001808060.1 CDS BamMC406_1356 NC_010551.1 1503059 1504420 D PFAM: Peptidoglycan-binding LysM; KEGG: bam:Bamb_1317 peptidoglycan-binding LysM; peptidoglycan-binding LysM 1503059..1504420 Burkholderia ambifaria MC40-6 6177238 YP_001808061.1 CDS BamMC406_1357 NC_010551.1 1504431 1506818 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE2 domain protein; KEGG: bam:Bamb_1318 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1504431..1506818 Burkholderia ambifaria MC40-6 6177447 YP_001808062.1 CDS BamMC406_1358 NC_010551.1 1506856 1507470 D KEGG: bam:Bamb_1319 hypothetical protein; hypothetical protein 1506856..1507470 Burkholderia ambifaria MC40-6 6176151 YP_001808063.1 CDS BamMC406_1359 NC_010551.1 1507531 1508415 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bam:Bamb_1320 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase complement(1507531..1508415) Burkholderia ambifaria MC40-6 6176372 YP_001808064.1 CDS valS NC_010551.1 1508503 1511370 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1508503..1511370) Burkholderia ambifaria MC40-6 6176200 YP_001808065.1 CDS BamMC406_1361 NC_010551.1 1511803 1512036 D KEGG: psb:Psyr_4042 hypothetical protein; hypothetical protein 1511803..1512036 Burkholderia ambifaria MC40-6 6178336 YP_001808066.1 CDS BamMC406_1362 NC_010551.1 1512052 1512471 D KEGG: stm:STM0278 putative periplasmic protein; hypothetical protein 1512052..1512471 Burkholderia ambifaria MC40-6 6178578 YP_001808067.1 CDS BamMC406_1363 NC_010551.1 1512747 1515110 D PFAM: UvrD/REP helicase; KEGG: bam:Bamb_1322 UvrD/REP helicase; UvrD/REP helicase 1512747..1515110 Burkholderia ambifaria MC40-6 6178917 YP_001808068.1 CDS BamMC406_1364 NC_010551.1 1515110 1515904 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1515110..1515904 Burkholderia ambifaria MC40-6 6179035 YP_001808069.1 CDS BamMC406_1365 NC_010551.1 1515971 1517209 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1326 major facilitator superfamily MFS_1; major facilitator transporter complement(1515971..1517209) Burkholderia ambifaria MC40-6 6179114 YP_001808070.1 CDS BamMC406_1366 NC_010551.1 1517605 1519281 D PFAM: chemotaxis sensory transducer; KEGG: bam:Bamb_1327 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1517605..1519281 Burkholderia ambifaria MC40-6 6177502 YP_001808071.1 CDS BamMC406_1367 NC_010551.1 1519299 1520177 R PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_1328 secretion protein HlyD family protein; secretion protein HlyD family protein complement(1519299..1520177) Burkholderia ambifaria MC40-6 6177482 YP_001808072.1 CDS BamMC406_1368 NC_010551.1 1520190 1520393 R PFAM: protein of unknown function DUF1656; KEGG: bam:Bamb_1329 protein of unknown function DUF1656; hypothetical protein complement(1520190..1520393) Burkholderia ambifaria MC40-6 6177480 YP_001808073.1 CDS BamMC406_1369 NC_010551.1 1520390 1522591 R PFAM: Fusaric acid resistance protein conserved region; KEGG: bam:Bamb_1330 fusaric acid resistance protein conserved region; fusaric acid resistance protein region complement(1520390..1522591) Burkholderia ambifaria MC40-6 6178621 YP_001808074.1 CDS BamMC406_1370 NC_010551.1 1522607 1524154 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_1331 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(1522607..1524154) Burkholderia ambifaria MC40-6 6177346 YP_001808075.1 CDS BamMC406_1371 NC_010551.1 1524372 1525313 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1332 transcriptional regulator, LysR family; LysR family transcriptional regulator 1524372..1525313 Burkholderia ambifaria MC40-6 6176865 YP_001808076.1 CDS BamMC406_1372 NC_010551.1 1525438 1525596 D KEGG: bmu:Bmul_1864 hypothetical protein; hypothetical protein 1525438..1525596 Burkholderia ambifaria MC40-6 6176506 YP_001808077.1 CDS BamMC406_1373 NC_010551.1 1525653 1526480 R PFAM: metallophosphoesterase; KEGG: bam:Bamb_1333 metallophosphoesterase; metallophosphoesterase complement(1525653..1526480) Burkholderia ambifaria MC40-6 6176751 YP_001808078.1 CDS BamMC406_1374 NC_010551.1 1526506 1527927 R PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_1334 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(1526506..1527927) Burkholderia ambifaria MC40-6 6176403 YP_001808079.1 CDS BamMC406_1375 NC_010551.1 1527948 1528340 R KEGG: bch:Bcen2424_1454 membrane protein; membrane protein complement(1527948..1528340) Burkholderia ambifaria MC40-6 6176572 YP_001808080.1 CDS BamMC406_1376 NC_010551.1 1528337 1528957 R TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: bam:Bamb_1336 flavodoxin/nitric oxide synthase; flavoprotein WrbA complement(1528337..1528957) Burkholderia ambifaria MC40-6 6177389 YP_001808081.1 CDS BamMC406_1377 NC_010551.1 1529102 1530433 D PFAM: ribonuclease BN; KEGG: bam:Bamb_1337 putative ribonuclease BN; ribonuclease BN 1529102..1530433 Burkholderia ambifaria MC40-6 6176492 YP_001808082.1 CDS BamMC406_1378 NC_010551.1 1530452 1530769 R KEGG: bch:Bcen2424_1457 membrane protein; membrane protein complement(1530452..1530769) Burkholderia ambifaria MC40-6 6176950 YP_001808083.1 CDS BamMC406_1379 NC_010551.1 1530927 1531382 D PFAM: CBS domain containing protein; KEGG: bam:Bamb_1339 putative transcriptional regulator, XRE family; hypothetical protein 1530927..1531382 Burkholderia ambifaria MC40-6 6176907 YP_001808084.1 CDS BamMC406_1380 NC_010551.1 1531525 1533459 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1340 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1531525..1533459 Burkholderia ambifaria MC40-6 6177073 YP_001808085.1 CDS BamMC406_1381 NC_010551.1 1533657 1534757 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1533657..1534757 Burkholderia ambifaria MC40-6 6176808 YP_001808086.1 CDS BamMC406_1382 NC_010551.1 1534827 1535909 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_1342 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(1534827..1535909) Burkholderia ambifaria MC40-6 6176655 YP_001808087.1 CDS BamMC406_1383 NC_010551.1 1536148 1537077 D TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: bam:Bamb_1343 ribokinase; ribokinase 1536148..1537077 Burkholderia ambifaria MC40-6 6176454 YP_001808088.1 CDS BamMC406_1384 NC_010551.1 1537141 1538460 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1344 major facilitator superfamily MFS_1; major facilitator transporter 1537141..1538460 Burkholderia ambifaria MC40-6 6176736 YP_001808089.1 CDS BamMC406_1385 NC_010551.1 1538505 1539452 D PFAM: dihydrodipicolinate synthetase; KEGG: bam:Bamb_1345 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 1538505..1539452 Burkholderia ambifaria MC40-6 6176671 YP_001808090.1 CDS BamMC406_1386 NC_010551.1 1539517 1541190 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: bam:Bamb_1346 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(1539517..1541190) Burkholderia ambifaria MC40-6 6176619 YP_001808091.1 CDS BamMC406_1387 NC_010551.1 1541369 1542145 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_1347 short chain dehydrogenase; short chain dehydrogenase 1541369..1542145 Burkholderia ambifaria MC40-6 6177154 YP_001808092.1 CDS BamMC406_1388 NC_010551.1 1542178 1542609 D PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_1348 thioesterase superfamily protein; thioesterase superfamily protein 1542178..1542609 Burkholderia ambifaria MC40-6 6176067 YP_001808093.1 CDS BamMC406_1389 NC_010551.1 1542716 1543261 R TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold-4 domain protein; KEGG: bam:Bamb_1349 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1542716..1543261) Burkholderia ambifaria MC40-6 6176118 YP_001808094.1 CDS BamMC406_1390 NC_010551.1 1543485 1544189 D KEGG: bch:Bcen2424_1465 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 1543485..1544189 Burkholderia ambifaria MC40-6 6177068 YP_001808095.1 CDS BamMC406_1391 NC_010551.1 1544191 1544832 D KEGG: bam:Bamb_1351 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 1544191..1544832 Burkholderia ambifaria MC40-6 6177045 YP_001808096.1 CDS BamMC406_1392 NC_010551.1 1544910 1545623 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_1467 short chain dehydrogenase; short chain dehydrogenase complement(1544910..1545623) Burkholderia ambifaria MC40-6 6176445 YP_001808097.1 CDS BamMC406_1393 NC_010551.1 1545661 1546671 R PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_1353 polysaccharide deacetylase; polysaccharide deacetylase complement(1545661..1546671) Burkholderia ambifaria MC40-6 6176710 YP_001808098.1 CDS BamMC406_1394 NC_010551.1 1546683 1547240 R PFAM: protein of unknown function DUF1486; KEGG: bam:Bamb_1354 protein of unknown function DUF1486; hypothetical protein complement(1546683..1547240) Burkholderia ambifaria MC40-6 6175976 YP_001808099.1 CDS BamMC406_1395 NC_010551.1 1547379 1548284 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1355 transcriptional regulator, LysR family; LysR family transcriptional regulator 1547379..1548284 Burkholderia ambifaria MC40-6 6175952 YP_001808100.1 CDS BamMC406_1396 NC_010551.1 1548415 1549311 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_1356 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1548415..1549311 Burkholderia ambifaria MC40-6 6177454 YP_001808101.1 CDS BamMC406_1397 NC_010551.1 1549393 1549746 D PFAM: Endoribonuclease L-PSP; KEGG: bch:Bcen2424_1472 endoribonuclease L-PSP; endoribonuclease L-PSP 1549393..1549746 Burkholderia ambifaria MC40-6 6176739 YP_001808102.1 CDS BamMC406_1398 NC_010551.1 1549786 1552005 D KEGG: bam:Bamb_1358 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1549786..1552005 Burkholderia ambifaria MC40-6 6176580 YP_001808103.1 CDS thrS NC_010551.1 1552447 1554354 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1552447..1554354 Burkholderia ambifaria MC40-6 6176571 YP_001808104.1 CDS BamMC406_1400 NC_010551.1 1554458 1554928 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: bam:Bamb_1360 translation initiation factor IF-3; translation initiation factor IF-3 1554458..1554928 Burkholderia ambifaria MC40-6 6177591 YP_001808105.1 CDS rpmI NC_010551.1 1555119 1555316 D PFAM: ribosomal protein L35; KEGG: bte:BTH_I2593 ribosomal protein L35; 50S ribosomal protein L35 1555119..1555316 Burkholderia ambifaria MC40-6 6176786 YP_001808106.1 CDS rplT NC_010551.1 1555347 1555706 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1555347..1555706 Burkholderia ambifaria MC40-6 6176546 YP_001808107.1 CDS pheS NC_010551.1 1555831 1556868 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1555831..1556868 Burkholderia ambifaria MC40-6 6176517 YP_001808108.1 CDS pheT NC_010551.1 1556965 1559394 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1556965..1559394 Burkholderia ambifaria MC40-6 6177353 YP_001808109.1 CDS ihfA NC_010551.1 1559458 1559853 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1559458..1559853 Burkholderia ambifaria MC40-6 6176669 YP_001808110.1 CDS BamMC406_1406 NC_010551.1 1559915 1560328 D PFAM: regulatory protein MerR; KEGG: bam:Bamb_1366 transcriptional regulator, MerR family; MerR family transcriptional regulator 1559915..1560328 Burkholderia ambifaria MC40-6 6177174 YP_001808111.1 CDS BamMC406_1407 NC_010551.1 1560415 1562625 R PFAM: protein of unknown function DUF811; KEGG: bam:Bamb_1367 protein of unknown function DUF811; hypothetical protein complement(1560415..1562625) Burkholderia ambifaria MC40-6 6176685 YP_001808112.1 CDS BamMC406_1408 NC_010551.1 1563189 1563902 D KEGG: bam:Bamb_1368 hypothetical protein; hypothetical protein 1563189..1563902 Burkholderia ambifaria MC40-6 6176066 YP_001808113.1 CDS BamMC406_1409 NC_010551.1 1564293 1565501 D KEGG: bam:Bamb_1369 uncharacterized lipoprotein-like protein; hypothetical protein 1564293..1565501 Burkholderia ambifaria MC40-6 6176049 YP_001808114.1 CDS BamMC406_1410 NC_010551.1 1566169 1566426 R KEGG: bam:Bamb_1370 hypothetical protein; hypothetical protein complement(1566169..1566426) Burkholderia ambifaria MC40-6 6176535 YP_001808115.1 CDS BamMC406_1411 NC_010551.1 1566563 1566835 R KEGG: bam:Bamb_1371 hypothetical protein; hypothetical protein complement(1566563..1566835) Burkholderia ambifaria MC40-6 6176630 YP_001808116.1 CDS BamMC406_1412 NC_010551.1 1567058 1567732 R PFAM: protein of unknown function DUF218; KEGG: bam:Bamb_1372 protein of unknown function DUF218; hypothetical protein complement(1567058..1567732) Burkholderia ambifaria MC40-6 6176662 YP_001808117.1 CDS BamMC406_1413 NC_010551.1 1567932 1568249 D KEGG: bam:Bamb_1373 hypothetical protein; hypothetical protein 1567932..1568249 Burkholderia ambifaria MC40-6 6176743 YP_001808118.1 CDS BamMC406_1414 NC_010551.1 1568439 1568690 R KEGG: bam:Bamb_1374 hypothetical protein; hypothetical protein complement(1568439..1568690) Burkholderia ambifaria MC40-6 6176757 YP_001808119.1 CDS BamMC406_1415 NC_010551.1 1568890 1569291 R KEGG: bmu:Bmul_1762 hypothetical protein; hypothetical protein complement(1568890..1569291) Burkholderia ambifaria MC40-6 6176810 YP_001808120.1 CDS BamMC406_1416 NC_010551.1 1569721 1570623 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1376 transcriptional regulator, LysR family; LysR family transcriptional regulator 1569721..1570623 Burkholderia ambifaria MC40-6 6176819 YP_001808121.1 CDS BamMC406_1417 NC_010551.1 1570688 1571890 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1570688..1571890 Burkholderia ambifaria MC40-6 6176898 YP_001808122.1 CDS BamMC406_1418 NC_010551.1 1572162 1573184 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: bam:Bamb_1378 putative transcriptional regulator; segregation and condensation protein B 1572162..1573184 Burkholderia ambifaria MC40-6 6176947 YP_001808123.1 CDS BamMC406_1419 NC_010551.1 1573245 1574963 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bam:Bamb_1379 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein 1573245..1574963 Burkholderia ambifaria MC40-6 6177149 YP_001808124.1 CDS BamMC406_1420 NC_010551.1 1575378 1575836 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1575378..1575836 Burkholderia ambifaria MC40-6 6177411 YP_001808125.1 CDS nusA NC_010551.1 1575836 1577311 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1575836..1577311 Burkholderia ambifaria MC40-6 6177455 YP_001808126.1 CDS infB NC_010551.1 1577403 1580321 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1577403..1580321 Burkholderia ambifaria MC40-6 6177459 YP_001808127.1 CDS rbfA NC_010551.1 1580436 1580834 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1580436..1580834 Burkholderia ambifaria MC40-6 6176554 YP_001808128.1 CDS truB NC_010551.1 1580848 1581780 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1580848..1581780 Burkholderia ambifaria MC40-6 6176529 YP_001808129.1 CDS BamMC406_1425 NC_010551.1 1581876 1583435 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1385 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(1581876..1583435) Burkholderia ambifaria MC40-6 6176945 YP_001808130.1 CDS BamMC406_1426 NC_010551.1 1583464 1584681 R PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_1386 secretion protein HlyD family protein; secretion protein HlyD family protein complement(1583464..1584681) Burkholderia ambifaria MC40-6 6177134 YP_001808131.1 CDS BamMC406_1427 NC_010551.1 1584734 1586230 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_1387 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(1584734..1586230) Burkholderia ambifaria MC40-6 6177111 YP_001808132.1 CDS BamMC406_1428 NC_010551.1 1586315 1586809 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_1388 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1586315..1586809) Burkholderia ambifaria MC40-6 6177160 YP_001808133.1 CDS BamMC406_1429 NC_010551.1 1587132 1588958 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: bam:Bamb_1389 GTP-binding protein TypA; GTP-binding protein TypA 1587132..1588958 Burkholderia ambifaria MC40-6 6177053 YP_001808134.1 CDS sucA NC_010551.1 1589276 1592140 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1589276..1592140 Burkholderia ambifaria MC40-6 6176392 YP_001808135.1 CDS BamMC406_1431 NC_010551.1 1592276 1593553 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1592276..1593553 Burkholderia ambifaria MC40-6 6177027 YP_001808136.1 CDS BamMC406_1432 NC_010551.1 1593635 1595065 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1593635..1595065 Burkholderia ambifaria MC40-6 6177066 YP_001808137.1 CDS BamMC406_1433 NC_010551.1 1595165 1596262 D PFAM: AFG1-family ATPase; KEGG: bam:Bamb_1393 AFG1-family ATPase; AFG1 family ATPase 1595165..1596262 Burkholderia ambifaria MC40-6 6176802 YP_001808138.1 CDS BamMC406_1434 NC_010551.1 1596407 1596817 D KEGG: bam:Bamb_1394 hypothetical protein; hypothetical protein 1596407..1596817 Burkholderia ambifaria MC40-6 6176960 YP_001808139.1 CDS BamMC406_1435 NC_010551.1 1596916 1597377 R KEGG: bam:Bamb_1395 hypothetical protein; hypothetical protein complement(1596916..1597377) Burkholderia ambifaria MC40-6 6176645 YP_001808140.1 CDS BamMC406_1436 NC_010551.1 1597543 1599228 R PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: bam:Bamb_1396 polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein complement(1597543..1599228) Burkholderia ambifaria MC40-6 6176402 YP_001808141.1 CDS BamMC406_1437 NC_010551.1 1599371 1600642 R KEGG: bam:Bamb_1397 hypothetical protein; hypothetical protein complement(1599371..1600642) Burkholderia ambifaria MC40-6 6176410 YP_001808142.1 CDS BamMC406_1438 NC_010551.1 1600683 1602188 R KEGG: bam:Bamb_1398 hypothetical protein; hypothetical protein complement(1600683..1602188) Burkholderia ambifaria MC40-6 6176534 YP_001808143.1 CDS BamMC406_1439 NC_010551.1 1602854 1603072 D PFAM: Flp/Fap pilin component; KEGG: bvi:Bcep1808_1483 Flp/Fap pilin component; Flp/Fap pilin component 1602854..1603072 Burkholderia ambifaria MC40-6 6176473 YP_001808144.1 CDS BamMC406_1440 NC_010551.1 1603171 1603668 D PFAM: peptidase A24A prepilin type IV; KEGG: bmu:Bmul_1735 peptidase A24A prepilin type IV; peptidase A24A prepilin type IV 1603171..1603668 Burkholderia ambifaria MC40-6 6176243 YP_001808145.1 CDS BamMC406_1441 NC_010551.1 1603668 1604174 D PFAM: TadE family protein; KEGG: bmu:Bmul_1734 TadE family protein; TadE family protein 1603668..1604174 Burkholderia ambifaria MC40-6 6178889 YP_001808146.1 CDS BamMC406_1442 NC_010551.1 1604250 1605185 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bmu:Bmul_1733 Flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB 1604250..1605185 Burkholderia ambifaria MC40-6 6178526 YP_001808147.1 CDS BamMC406_1443 NC_010551.1 1605195 1606580 D PFAM: type II and III secretion system protein; KEGG: bvi:Bcep1808_1487 type II and III secretion system protein; type II and III secretion system protein 1605195..1606580 Burkholderia ambifaria MC40-6 6176461 YP_001808148.1 CDS BamMC406_1444 NC_010551.1 1606641 1607915 D KEGG: bvi:Bcep1808_1488 response regulator receiver protein; response regulator receiver protein 1606641..1607915 Burkholderia ambifaria MC40-6 6178480 YP_001808149.1 CDS BamMC406_1445 NC_010551.1 1607919 1609286 D PFAM: type II secretion system protein E; KEGG: bvi:Bcep1808_1489 type II secretion system protein E; type II secretion system protein E 1607919..1609286 Burkholderia ambifaria MC40-6 6178061 YP_001808150.1 CDS BamMC406_1446 NC_010551.1 1609279 1610271 D PFAM: type II secretion system protein; KEGG: bmu:Bmul_1729 type II secretion system protein; type II secretion system protein 1609279..1610271 Burkholderia ambifaria MC40-6 6178056 YP_001808151.1 CDS BamMC406_1447 NC_010551.1 1610276 1611268 D PFAM: type II secretion system protein; KEGG: bvi:Bcep1808_1491 type II secretion system protein; type II secretion system protein 1610276..1611268 Burkholderia ambifaria MC40-6 6177103 YP_001808152.1 CDS BamMC406_1448 NC_010551.1 1611287 1612129 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bvi:Bcep1808_1492 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1611287..1612129 Burkholderia ambifaria MC40-6 6177304 YP_001808153.1 CDS BamMC406_1449 NC_010551.1 1612150 1612479 D KEGG: bmu:Bmul_1726 hypothetical protein; hypothetical protein 1612150..1612479 Burkholderia ambifaria MC40-6 6176557 YP_001808154.1 CDS BamMC406_1450 NC_010551.1 1612575 1614521 D KEGG: bmu:Bmul_1725 hypothetical protein; hypothetical protein 1612575..1614521 Burkholderia ambifaria MC40-6 6176075 YP_001808155.1 CDS BamMC406_1451 NC_010551.1 1614533 1615924 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_1411 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1614533..1615924 Burkholderia ambifaria MC40-6 6178539 YP_001808156.1 CDS BamMC406_1452 NC_010551.1 1615980 1616687 D KEGG: bam:Bamb_1412 hypothetical protein; hypothetical protein 1615980..1616687 Burkholderia ambifaria MC40-6 6179094 YP_001808157.1 CDS BamMC406_1453 NC_010551.1 1616771 1617361 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: bam:Bamb_1413 RNA chaperone Hfq; RNA chaperone Hfq complement(1616771..1617361) Burkholderia ambifaria MC40-6 6178613 YP_001808158.1 CDS BamMC406_1454 NC_010551.1 1617657 1617938 D KEGG: bam:Bamb_1414 hypothetical protein; hypothetical protein 1617657..1617938 Burkholderia ambifaria MC40-6 6177048 YP_001808159.1 CDS BamMC406_1455 NC_010551.1 1617966 1618886 R KEGG: bam:Bamb_1415 hypothetical protein; hypothetical protein complement(1617966..1618886) Burkholderia ambifaria MC40-6 6177159 YP_001808160.1 CDS BamMC406_1456 NC_010551.1 1618916 1620670 R PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_1416 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1618916..1620670) Burkholderia ambifaria MC40-6 6178629 YP_001808161.1 CDS BamMC406_1457 NC_010551.1 1620863 1621693 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_1417 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1620863..1621693) Burkholderia ambifaria MC40-6 6176910 YP_001808162.1 CDS BamMC406_1458 NC_010551.1 1621910 1623130 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1418 major facilitator superfamily MFS_1; major facilitator transporter complement(1621910..1623130) Burkholderia ambifaria MC40-6 6177148 YP_001808163.1 CDS BamMC406_1459 NC_010551.1 1623421 1623963 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_1419 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1623421..1623963 Burkholderia ambifaria MC40-6 6176787 YP_001808164.1 CDS BamMC406_1460 NC_010551.1 1624103 1624729 D PFAM: Putative ParB-like nuclease; KEGG: bam:Bamb_1420 hypothetical protein; putative ParB-like nuclease 1624103..1624729 Burkholderia ambifaria MC40-6 6178675 YP_001808165.1 CDS BamMC406_1461 NC_010551.1 1624754 1626472 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bam:Bamb_1421 sulphate transporter; sulfate transporter 1624754..1626472 Burkholderia ambifaria MC40-6 6176493 YP_001808166.1 CDS BamMC406_1462 NC_010551.1 1626510 1627460 R PFAM: PfkB domain protein; KEGG: bam:Bamb_1422 PfkB domain protein; ribokinase-like domain-containing protein complement(1626510..1627460) Burkholderia ambifaria MC40-6 6177277 YP_001808167.1 CDS BamMC406_1463 NC_010551.1 1627594 1628538 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_1423 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(1627594..1628538) Burkholderia ambifaria MC40-6 6176620 YP_001808168.1 CDS BamMC406_1464 NC_010551.1 1628625 1629662 R PFAM: inner-membrane translocator; KEGG: bam:Bamb_1424 inner-membrane translocator; monosaccharide-transporting ATPase complement(1628625..1629662) Burkholderia ambifaria MC40-6 6178627 YP_001808169.1 CDS BamMC406_1465 NC_010551.1 1629703 1631256 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1425 ABC transporter related; ABC transporter-like protein complement(1629703..1631256) Burkholderia ambifaria MC40-6 6176781 YP_001808170.1 CDS BamMC406_1466 NC_010551.1 1631243 1632490 R PFAM: ROK family protein; KEGG: bam:Bamb_1426 ROK family protein; ROK family protein complement(1631243..1632490) Burkholderia ambifaria MC40-6 6176678 YP_001808171.1 CDS BamMC406_1468 NC_010551.1 1635301 1637754 D KEGG: bam:Bamb_1447 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R 1635301..1637754 Burkholderia ambifaria MC40-6 6176442 YP_001808172.1 CDS BamMC406_1469 NC_010551.1 1637906 1638649 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bam:Bamb_1448 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase 1637906..1638649 Burkholderia ambifaria MC40-6 6176429 YP_001808173.1 CDS BamMC406_1470 NC_010551.1 1638766 1639635 D PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bam:Bamb_1449 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 1638766..1639635 Burkholderia ambifaria MC40-6 6178744 YP_001808174.1 CDS BamMC406_1471 NC_010551.1 1639739 1640431 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1639739..1640431 Burkholderia ambifaria MC40-6 6178032 YP_001808175.1 CDS BamMC406_1472 NC_010551.1 1640715 1641431 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_1451 GntR domain protein; GntR family transcriptional regulator 1640715..1641431 Burkholderia ambifaria MC40-6 6176097 YP_001808176.1 CDS BamMC406_1473 NC_010551.1 1641533 1642519 D PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: bam:Bamb_1452 oxidoreductase domain protein; oxidoreductase domain-containing protein 1641533..1642519 Burkholderia ambifaria MC40-6 6178743 YP_001808177.1 CDS BamMC406_1474 NC_010551.1 1642575 1643354 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1453 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(1642575..1643354) Burkholderia ambifaria MC40-6 6176507 YP_001808178.1 CDS BamMC406_1475 NC_010551.1 1643390 1644184 R PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: bam:Bamb_1454 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1643390..1644184) Burkholderia ambifaria MC40-6 6176691 YP_001808179.1 CDS BamMC406_1476 NC_010551.1 1644285 1645355 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(1644285..1645355) Burkholderia ambifaria MC40-6 6177080 YP_001808180.1 CDS BamMC406_1477 NC_010551.1 1645503 1646333 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(1645503..1646333) Burkholderia ambifaria MC40-6 6176077 YP_001808181.1 CDS aat NC_010551.1 1646367 1647131 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(1646367..1647131) Burkholderia ambifaria MC40-6 6178703 YP_001808182.1 CDS BamMC406_1479 NC_010551.1 1647143 1647688 R PFAM: NUDIX hydrolase; KEGG: bam:Bamb_1458 NUDIX hydrolase; NUDIX hydrolase complement(1647143..1647688) Burkholderia ambifaria MC40-6 6176673 YP_001808183.1 CDS BamMC406_1480 NC_010551.1 1648163 1648660 D PFAM: protein of unknown function DUF336; KEGG: bam:Bamb_1459 hypothetical protein; hypothetical protein 1648163..1648660 Burkholderia ambifaria MC40-6 6178690 YP_001808184.1 CDS BamMC406_1481 NC_010551.1 1648664 1649002 D PFAM: small multidrug resistance protein; KEGG: bam:Bamb_1460 small multidrug resistance protein; small multidrug resistance protein 1648664..1649002 Burkholderia ambifaria MC40-6 6178777 YP_001808185.1 CDS BamMC406_1482 NC_010551.1 1649034 1650194 D catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase 1649034..1650194 Burkholderia ambifaria MC40-6 6176491 YP_001808186.1 CDS BamMC406_1483 NC_010551.1 1650314 1650742 R KEGG: bam:Bamb_1462 hypothetical protein; hypothetical protein complement(1650314..1650742) Burkholderia ambifaria MC40-6 6177372 YP_001808187.1 CDS BamMC406_1484 NC_010551.1 1651084 1652241 D catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 1651084..1652241 Burkholderia ambifaria MC40-6 6177322 YP_001808188.1 CDS BamMC406_1485 NC_010551.1 1652256 1653068 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1464 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1652256..1653068 Burkholderia ambifaria MC40-6 6176405 YP_001808189.1 CDS BamMC406_1486 NC_010551.1 1653065 1654024 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1465 ABC transporter related; ABC transporter-like protein 1653065..1654024 Burkholderia ambifaria MC40-6 6177278 YP_001808190.1 CDS BamMC406_1487 NC_010551.1 1654082 1654297 D PFAM: TOBE domain protein; KEGG: bmu:Bmul_1667 TOBE domain protein; TOBE domain-containing protein 1654082..1654297 Burkholderia ambifaria MC40-6 6177398 YP_001808191.1 CDS BamMC406_1488 NC_010551.1 1654437 1654634 D KEGG: bam:Bamb_1467 hypothetical protein; hypothetical protein 1654437..1654634 Burkholderia ambifaria MC40-6 6176556 YP_001808192.1 CDS BamMC406_1489 NC_010551.1 1654690 1654944 D KEGG: bam:Bamb_1468 hypothetical protein; hypothetical protein 1654690..1654944 Burkholderia ambifaria MC40-6 6176122 YP_001808193.1 CDS BamMC406_1490 NC_010551.1 1655070 1656056 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: bam:Bamb_1469 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 1655070..1656056 Burkholderia ambifaria MC40-6 6178883 YP_001808194.1 CDS BamMC406_1491 NC_010551.1 1657014 1657115 D hypothetical protein 1657014..1657115 Burkholderia ambifaria MC40-6 6178870 YP_001808195.1 CDS BamMC406_1492 NC_010551.1 1657688 1658206 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_1472 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1657688..1658206 Burkholderia ambifaria MC40-6 6176094 YP_001808196.1 CDS BamMC406_1493 NC_010551.1 1658279 1658743 R KEGG: bam:Bamb_1473 hypothetical protein; hypothetical protein complement(1658279..1658743) Burkholderia ambifaria MC40-6 6178898 YP_001808197.1 CDS BamMC406_1494 NC_010551.1 1659429 1660172 R PFAM: protein of unknown function DUF1260; KEGG: bam:Bamb_1474 protein of unknown function DUF1260; hypothetical protein complement(1659429..1660172) Burkholderia ambifaria MC40-6 6177371 YP_001808198.1 CDS BamMC406_1495 NC_010551.1 1660382 1660690 D KEGG: bam:Bamb_1475 hypothetical protein; hypothetical protein 1660382..1660690 Burkholderia ambifaria MC40-6 6176929 YP_001808199.1 CDS BamMC406_1496 NC_010551.1 1660728 1660982 D KEGG: bam:Bamb_1476 hypothetical protein; hypothetical protein 1660728..1660982 Burkholderia ambifaria MC40-6 6176909 YP_001808200.1 CDS BamMC406_1497 NC_010551.1 1661000 1661539 D KEGG: bam:Bamb_1477 hypothetical protein; hypothetical protein 1661000..1661539 Burkholderia ambifaria MC40-6 6176588 YP_001808201.1 CDS BamMC406_1498 NC_010551.1 1661703 1662176 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_1478 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1661703..1662176 Burkholderia ambifaria MC40-6 6177000 YP_001808202.1 CDS BamMC406_1499 NC_010551.1 1662318 1662725 R KEGG: bam:Bamb_1479 hypothetical protein; hypothetical protein complement(1662318..1662725) Burkholderia ambifaria MC40-6 6176483 YP_001808203.1 CDS BamMC406_1500 NC_010551.1 1662842 1663060 D KEGG: bam:Bamb_1480 hypothetical protein; hypothetical protein 1662842..1663060 Burkholderia ambifaria MC40-6 6176453 YP_001808204.1 CDS BamMC406_1501 NC_010551.1 1663229 1663957 R KEGG: bcn:Bcen_1105 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein complement(1663229..1663957) Burkholderia ambifaria MC40-6 6178931 YP_001808205.1 CDS BamMC406_1502 NC_010551.1 1664315 1664797 R PFAM: helix-turn-helix HxlR type; KEGG: bam:Bamb_1482 transcriptional regulator, HxlR family; HxlR family transcriptional regulator complement(1664315..1664797) Burkholderia ambifaria MC40-6 6176095 YP_001808206.1 CDS BamMC406_1503 NC_010551.1 1664967 1665404 D PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_1483 hypothetical protein; thioesterase superfamily protein 1664967..1665404 Burkholderia ambifaria MC40-6 6178936 YP_001808207.1 CDS BamMC406_1504 NC_010551.1 1665623 1666675 D PFAM: aldo/keto reductase; KEGG: bam:Bamb_1484 aldo/keto reductase; aldo/keto reductase 1665623..1666675 Burkholderia ambifaria MC40-6 6176735 YP_001808208.1 CDS BamMC406_1505 NC_010551.1 1666760 1668046 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1485 major facilitator superfamily MFS_1; major facilitator transporter complement(1666760..1668046) Burkholderia ambifaria MC40-6 6179116 YP_001808209.1 CDS BamMC406_1506 NC_010551.1 1668082 1669503 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bam:Bamb_1486 hypothetical protein; hypothetical protein complement(1668082..1669503) Burkholderia ambifaria MC40-6 6178929 YP_001808210.1 CDS BamMC406_1507 NC_010551.1 1669667 1670620 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1487 transcriptional regulator, LysR family; LysR family transcriptional regulator 1669667..1670620 Burkholderia ambifaria MC40-6 6176591 YP_001808211.1 CDS BamMC406_1508 NC_010551.1 1670685 1671812 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1670685..1671812 Burkholderia ambifaria MC40-6 6179085 YP_001808212.1 CDS BamMC406_1509 NC_010551.1 1671809 1672867 D PFAM: permease; KEGG: bam:Bamb_1489 permease; permease 1671809..1672867 Burkholderia ambifaria MC40-6 6176921 YP_001808213.1 CDS BamMC406_1510 NC_010551.1 1673045 1673467 D KEGG: bam:Bamb_1490 hypothetical protein; hypothetical protein 1673045..1673467 Burkholderia ambifaria MC40-6 6178951 YP_001808214.1 CDS BamMC406_1511 NC_010551.1 1673527 1674360 R TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: bam:Bamb_1491 ABC-2 type transporter, NodJ family; ABC transporter complement(1673527..1674360) Burkholderia ambifaria MC40-6 6177120 YP_001808215.1 CDS BamMC406_1512 NC_010551.1 1674367 1675281 R involved in the export of lipooligosaccharides during nodulation; nodulation ABC transporter NodI complement(1674367..1675281) Burkholderia ambifaria MC40-6 6176595 YP_001808216.1 CDS BamMC406_1513 NC_010551.1 1675613 1676110 D PFAM: UspA domain protein; KEGG: bam:Bamb_1493 UspA domain protein; UspA domain-containing protein 1675613..1676110 Burkholderia ambifaria MC40-6 6176511 YP_001808217.1 CDS BamMC406_1514 NC_010551.1 1676212 1676922 R KEGG: bam:Bamb_1494 hypothetical protein; hypothetical protein complement(1676212..1676922) Burkholderia ambifaria MC40-6 6176092 YP_001808218.1 CDS BamMC406_1515 NC_010551.1 1676952 1677290 R KEGG: bam:Bamb_1495 hypothetical protein; hypothetical protein complement(1676952..1677290) Burkholderia ambifaria MC40-6 6178934 YP_001808219.1 CDS BamMC406_1516 NC_010551.1 1677317 1677964 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1677317..1677964) Burkholderia ambifaria MC40-6 6176968 YP_001808220.1 CDS BamMC406_1517 NC_010551.1 1678229 1679266 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_1497 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 1678229..1679266 Burkholderia ambifaria MC40-6 6176833 YP_001808221.1 CDS BamMC406_1518 NC_010551.1 1679413 1680312 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1498 sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter permease 1679413..1680312 Burkholderia ambifaria MC40-6 6179057 YP_001808222.1 CDS BamMC406_1519 NC_010551.1 1680309 1681256 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1499 sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter permease 1680309..1681256 Burkholderia ambifaria MC40-6 6177211 YP_001808223.1 CDS BamMC406_1520 NC_010551.1 1681270 1682328 D KEGG: bam:Bamb_1500 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase 1681270..1682328 Burkholderia ambifaria MC40-6 6176769 YP_001808224.1 CDS BamMC406_1521 NC_010551.1 1682408 1683334 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1501 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein 1682408..1683334 Burkholderia ambifaria MC40-6 6176768 YP_001808225.1 CDS BamMC406_1522 NC_010551.1 1683831 1684781 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_1503 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1683831..1684781 Burkholderia ambifaria MC40-6 6175959 YP_001808226.1 CDS BamMC406_1523 NC_010551.1 1684927 1686540 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1504 ABC transporter related; ABC transporter-like protein 1684927..1686540 Burkholderia ambifaria MC40-6 6176384 YP_001808227.1 CDS BamMC406_1524 NC_010551.1 1686537 1687556 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_1505 inner-membrane translocator; monosaccharide-transporting ATPase 1686537..1687556 Burkholderia ambifaria MC40-6 6176566 YP_001808228.1 CDS BamMC406_1525 NC_010551.1 1687593 1688624 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_1506 transcriptional regulator, LacI family; LacI family transcriptional regulator 1687593..1688624 Burkholderia ambifaria MC40-6 6176629 YP_001808229.1 CDS BamMC406_1526 NC_010551.1 1688621 1689547 D TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: bam:Bamb_1507 ribokinase; ribokinase 1688621..1689547 Burkholderia ambifaria MC40-6 6177074 YP_001808230.1 CDS BamMC406_1527 NC_010551.1 1689836 1691599 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_1508 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1689836..1691599 Burkholderia ambifaria MC40-6 6176231 YP_001808231.1 CDS BamMC406_1528 NC_010551.1 1692120 1694042 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: bam:Bamb_1510 putative serine protein kinase, PrkA; putative serine protein kinase PrkA 1692120..1694042 Burkholderia ambifaria MC40-6 6176608 YP_001808232.1 CDS BamMC406_1529 NC_010551.1 1694168 1695436 D PFAM: protein of unknown function DUF444; KEGG: bam:Bamb_1511 hypothetical protein; hypothetical protein 1694168..1695436 Burkholderia ambifaria MC40-6 6176039 YP_001808233.1 CDS BamMC406_1530 NC_010551.1 1695433 1697112 D PFAM: SpoVR family protein; KEGG: bam:Bamb_1512 hypothetical protein; SpoVR family protein 1695433..1697112 Burkholderia ambifaria MC40-6 6177714 YP_001808234.1 CDS BamMC406_1531 NC_010551.1 1697349 1698653 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1513 metabolite/H+ symporter, major facilitator superfamily (MFS); major facilitator superfamily metabolite/H(+) symporter 1697349..1698653 Burkholderia ambifaria MC40-6 6177722 YP_001808235.1 CDS BamMC406_1532 NC_010551.1 1699644 1700228 D PFAM: Fimbrial protein; KEGG: pfl:PFL_1462 type I pilus biogensis protein FimA; fimbrial protein 1699644..1700228 Burkholderia ambifaria MC40-6 6177728 YP_001808236.1 CDS BamMC406_1533 NC_010551.1 1700253 1701011 D PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pau:PA14_11070 chaperone CupB2; Pili assembly chaperone, N-terminal 1700253..1701011 Burkholderia ambifaria MC40-6 6177644 YP_001808237.1 CDS BamMC406_1534 NC_010551.1 1701191 1703833 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pap:PSPA7_1016 outer membrane usher protein HtrE (heat shock protein E); fimbrial biogenesis outer membrane usher protein 1701191..1703833 Burkholderia ambifaria MC40-6 6177631 YP_001808238.1 CDS BamMC406_1535 NC_010551.1 1703838 1704638 D PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pfl:PFL_1465 pili assembly chaperone; Pili assembly chaperone, N-terminal 1703838..1704638 Burkholderia ambifaria MC40-6 6177567 YP_001808239.1 CDS BamMC406_1536 NC_010551.1 1704719 1707733 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: pap:PSPA7_1018 adhesive protein CupB5; filamentous hemagglutinin outer membrane protein 1704719..1707733 Burkholderia ambifaria MC40-6 6177548 YP_001808240.1 CDS BamMC406_1537 NC_010551.1 1707793 1708965 D PFAM: Fimbrial protein; KEGG: pap:PSPA7_1019 fimbrial protein cupB6; fimbrial protein 1707793..1708965 Burkholderia ambifaria MC40-6 6177521 YP_001808241.1 CDS BamMC406_1538 NC_010551.1 1709106 1709984 D PFAM: extracellular solute-binding protein family 3; KEGG: bch:Bcen2424_1617 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1709106..1709984 Burkholderia ambifaria MC40-6 6179104 YP_001808242.1 CDS BamMC406_1539 NC_010551.1 1710079 1710801 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bch:Bcen2424_1618 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1710079..1710801 Burkholderia ambifaria MC40-6 6177662 YP_001808243.1 CDS BamMC406_1540 NC_010551.1 1710804 1711529 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_A4764 ABC polar amino acid transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1710804..1711529 Burkholderia ambifaria MC40-6 6177583 YP_001808244.1 CDS BamMC406_1541 NC_010551.1 1711695 1712972 R PFAM: Peptidase M23; KEGG: bam:Bamb_1518 peptidase M23B; peptidase M23 complement(1711695..1712972) Burkholderia ambifaria MC40-6 6176355 YP_001808245.1 CDS BamMC406_1542 NC_010551.1 1713303 1713950 R PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: bam:Bamb_1519 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1713303..1713950) Burkholderia ambifaria MC40-6 6176331 YP_001808246.1 CDS BamMC406_1543 NC_010551.1 1714102 1715289 D MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery; periplasmic multidrug efflux lipoprotein 1714102..1715289 Burkholderia ambifaria MC40-6 6176321 YP_001808247.1 CDS BamMC406_1544 NC_010551.1 1715308 1718445 D MexY; AmrB; involved in resistance to antibiotics; inner membrane protein; belongs to RND (resistance, nodulation, cell division) family of transporters; functions along with MexX and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery; multidrug efflux protein 1715308..1718445 Burkholderia ambifaria MC40-6 6176196 YP_001808248.1 CDS BamMC406_1545 NC_010551.1 1718445 1719902 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_1522 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 1718445..1719902 Burkholderia ambifaria MC40-6 6176192 YP_001808249.1 CDS BamMC406_1546 NC_010551.1 1720736 1721248 D PFAM: Fimbrial protein; KEGG: bam:Bamb_1523 fimbrial protein; fimbrial protein 1720736..1721248 Burkholderia ambifaria MC40-6 6176034 YP_001808250.1 CDS BamMC406_1547 NC_010551.1 1721371 1723824 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_1524 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 1721371..1723824 Burkholderia ambifaria MC40-6 6176029 YP_001808251.1 CDS BamMC406_1548 NC_010551.1 1723840 1724586 D PFAM: Pili assembly chaperone, N-terminal; KEGG: bam:Bamb_1525 pili assembly chaperone; Pili assembly chaperone, N-terminal 1723840..1724586 Burkholderia ambifaria MC40-6 6176011 YP_001808252.1 CDS BamMC406_1549 NC_010551.1 1724583 1725605 D KEGG: bam:Bamb_1526 fimbrial protein; fimbrial protein 1724583..1725605 Burkholderia ambifaria MC40-6 6175989 YP_001808253.1 CDS BamMC406_1550 NC_010551.1 1726032 1726700 D RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor 1726032..1726700 Burkholderia ambifaria MC40-6 6175979 YP_001808254.1 CDS BamMC406_1551 NC_010551.1 1726796 1727038 D PFAM: MbtH domain protein; KEGG: bam:Bamb_1530 MbtH domain protein; MbtH domain-containing protein 1726796..1727038 Burkholderia ambifaria MC40-6 6175970 YP_001808255.1 CDS BamMC406_1552 NC_010551.1 1727085 1728104 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bam:Bamb_1531 taurine catabolism dioxygenase TauD/TfdA; taurine catabolism dioxygenase TauD/TfdA 1727085..1728104 Burkholderia ambifaria MC40-6 6176081 YP_001808256.1 CDS BamMC406_1553 NC_010551.1 1728094 1728945 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1532 ABC transporter related; ABC transporter-like protein 1728094..1728945 Burkholderia ambifaria MC40-6 6177257 YP_001808257.1 CDS BamMC406_1554 NC_010551.1 1728942 1731035 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 1728942..1731035 Burkholderia ambifaria MC40-6 6176796 YP_001808258.1 CDS BamMC406_1555 NC_010551.1 1731032 1731832 D PFAM: ferric iron reductase; KEGG: bam:Bamb_1534 ferric iron reductase; ferric iron reductase 1731032..1731832 Burkholderia ambifaria MC40-6 6176962 YP_001808259.1 CDS BamMC406_1556 NC_010551.1 1731829 1732866 D PFAM: periplasmic binding protein; KEGG: bam:Bamb_1535 periplasmic binding protein; periplasmic binding protein 1731829..1732866 Burkholderia ambifaria MC40-6 6179045 YP_001808260.1 CDS BamMC406_1557 NC_010551.1 1733086 1734831 R KEGG: bam:Bamb_1536 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter complement(1733086..1734831) Burkholderia ambifaria MC40-6 6176040 YP_001808261.1 CDS BamMC406_1558 NC_010551.1 1735105 1744788 D TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: bam:Bamb_1537 amino acid adenylation domain; amino acid adenylation domain-containing protein 1735105..1744788 Burkholderia ambifaria MC40-6 6179051 YP_001808262.1 CDS BamMC406_1559 NC_010551.1 1744798 1749807 D TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: bam:Bamb_1538 amino acid adenylation domain; amino acid adenylation domain-containing protein 1744798..1749807 Burkholderia ambifaria MC40-6 6176262 YP_001808263.1 CDS BamMC406_1560 NC_010551.1 1749797 1750822 D KEGG: bam:Bamb_1539 hypothetical protein; hypothetical protein 1749797..1750822 Burkholderia ambifaria MC40-6 6177225 YP_001808264.1 CDS BamMC406_1561 NC_010551.1 1750857 1752233 D KEGG: bam:Bamb_1540 lysine/ornithine N-monooxygenase; lysine/ornithine N-monooxygenase 1750857..1752233 Burkholderia ambifaria MC40-6 6177202 YP_001808265.1 CDS BamMC406_1562 NC_010551.1 1752278 1754539 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_1541 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1752278..1754539 Burkholderia ambifaria MC40-6 6177388 YP_001808266.1 CDS BamMC406_1563 NC_010551.1 1754626 1755465 D KEGG: bam:Bamb_1542 folate-dependent phosphoribosylglycinamide formyltransferase PurN-like protein; folate-dependent phosphoribosylglycinamide formyltransferase PurN-like protein 1754626..1755465 Burkholderia ambifaria MC40-6 6177282 YP_001808267.1 CDS BamMC406_1564 NC_010551.1 1755465 1756481 D KEGG: bam:Bamb_1543 hypothetical protein; hypothetical protein 1755465..1756481 Burkholderia ambifaria MC40-6 6177207 YP_001808268.1 CDS BamMC406_1565 NC_010551.1 1756761 1757027 D PFAM: SpoVT/AbrB domain protein; KEGG: bam:Bamb_1544 SpoVT/AbrB domain protein; SpoVT/AbrB domain-containing protein 1756761..1757027 Burkholderia ambifaria MC40-6 6177164 YP_001808269.1 CDS BamMC406_1566 NC_010551.1 1757024 1757446 D PFAM: PilT protein domain protein; KEGG: bam:Bamb_1545 PilT protein domain protein; PilT domain-containing protein 1757024..1757446 Burkholderia ambifaria MC40-6 6177017 YP_001808270.1 CDS BamMC406_1567 NC_010551.1 1757489 1758394 R KEGG: bam:Bamb_1548 hypothetical protein; hypothetical protein complement(1757489..1758394) Burkholderia ambifaria MC40-6 6177001 YP_001808271.1 CDS BamMC406_1568 NC_010551.1 1758363 1759433 R KEGG: bam:Bamb_1549 hypothetical protein; hypothetical protein complement(1758363..1759433) Burkholderia ambifaria MC40-6 6176978 YP_001808272.1 CDS BamMC406_1569 NC_010551.1 1759789 1760952 D KEGG: bam:Bamb_1550 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1759789..1760952 Burkholderia ambifaria MC40-6 6176941 YP_001808273.1 CDS BamMC406_1570 NC_010551.1 1760995 1762299 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(1760995..1762299) Burkholderia ambifaria MC40-6 6176916 YP_001808274.1 CDS BamMC406_1571 NC_010551.1 1762303 1762905 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(1762303..1762905) Burkholderia ambifaria MC40-6 6176903 YP_001808275.1 CDS BamMC406_1572 NC_010551.1 1762940 1763317 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(1762940..1763317) Burkholderia ambifaria MC40-6 6176074 YP_001808276.1 CDS BamMC406_1573 NC_010551.1 1763314 1764063 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(1763314..1764063) Burkholderia ambifaria MC40-6 6176153 YP_001808277.1 CDS BamMC406_1574 NC_010551.1 1765056 1766114 D TIGRFAM: high-affinity nickel-transporter; KEGG: bvi:Bcep1808_1600 high-affinity nickel-transporter; high-affinity nickel-transporter 1765056..1766114 Burkholderia ambifaria MC40-6 6177489 YP_001808278.1 CDS BamMC406_1575 NC_010551.1 1766141 1767229 D TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bam:Bamb_1556 cobalamin biosynthesis protein CobW; cobalamin biosynthesis protein CobW 1766141..1767229 Burkholderia ambifaria MC40-6 6176270 YP_001808279.1 CDS cobN NC_010551.1 1767236 1771048 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 1767236..1771048 Burkholderia ambifaria MC40-6 6175944 YP_001808280.1 CDS BamMC406_1577 NC_010551.1 1771045 1772127 D KEGG: bam:Bamb_1558 magnesium chelatase; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase 1771045..1772127 Burkholderia ambifaria MC40-6 6175969 YP_001808281.1 CDS BamMC406_1578 NC_010551.1 1772196 1772804 D KEGG: bam:Bamb_1559 Mg-chelatase subunit ChlD-like protein; Mg-chelatase subunit ChlD-like protein 1772196..1772804 Burkholderia ambifaria MC40-6 6176131 YP_001808282.1 CDS BamMC406_1579 NC_010551.1 1772960 1773412 D PFAM: protein of unknown function DUF188; KEGG: bam:Bamb_1560 protein of unknown function DUF188; hypothetical protein 1772960..1773412 Burkholderia ambifaria MC40-6 6176126 YP_001808283.1 CDS BamMC406_1580 NC_010551.1 1773540 1774112 D KEGG: bam:Bamb_1561 hypothetical protein; hypothetical protein 1773540..1774112 Burkholderia ambifaria MC40-6 6175957 YP_001808284.1 CDS BamMC406_1581 NC_010551.1 1774149 1774475 D KEGG: bam:Bamb_1562 low molecular weight phosphotyrosine protein phosphatase; low molecular weight phosphotyrosine protein phosphatase 1774149..1774475 Burkholderia ambifaria MC40-6 6176277 YP_001808285.1 CDS BamMC406_1582 NC_010551.1 1774503 1774931 R PFAM: NUDIX hydrolase; KEGG: bam:Bamb_1563 NUDIX hydrolase; NUDIX hydrolase complement(1774503..1774931) Burkholderia ambifaria MC40-6 6178100 YP_001808286.1 CDS BamMC406_1583 NC_010551.1 1775094 1775333 R KEGG: bam:Bamb_1564 hypothetical protein; hypothetical protein complement(1775094..1775333) Burkholderia ambifaria MC40-6 6178105 YP_001808287.1 CDS BamMC406_1584 NC_010551.1 1775599 1776765 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_1565 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1775599..1776765 Burkholderia ambifaria MC40-6 6178117 YP_001808288.1 CDS BamMC406_1585 NC_010551.1 1776883 1778184 D TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; KEGG: bam:Bamb_1566 citrate/H+ symporter, CitMHS family; CitMHS family citrate/H+ symporter 1776883..1778184 Burkholderia ambifaria MC40-6 6178211 YP_001808289.1 CDS BamMC406_1586 NC_010551.1 1778327 1779493 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_1567 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1778327..1779493 Burkholderia ambifaria MC40-6 6178281 YP_001808290.1 CDS BamMC406_1587 NC_010551.1 1779554 1780297 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_1568 transcriptional regulator, IclR family; IclR family transcriptional regulator 1779554..1780297 Burkholderia ambifaria MC40-6 6178206 YP_001808291.1 CDS BamMC406_1588 NC_010551.1 1780348 1781703 R PFAM: Carbohydrate-binding family V/XII; KEGG: bam:Bamb_1569 chitinase; lysozyme complement(1780348..1781703) Burkholderia ambifaria MC40-6 6178261 YP_001808292.1 CDS BamMC406_1589 NC_010551.1 1782053 1783786 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: bam:Bamb_1571 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase complement(1782053..1783786) Burkholderia ambifaria MC40-6 6178285 YP_001808293.1 CDS BamMC406_1590 NC_010551.1 1783783 1784517 R catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase complement(1783783..1784517) Burkholderia ambifaria MC40-6 6178394 YP_001808294.1 CDS cobH NC_010551.1 1784514 1785140 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(1784514..1785140) Burkholderia ambifaria MC40-6 6178421 YP_001808295.1 CDS BamMC406_1592 NC_010551.1 1785133 1786497 R TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bam:Bamb_1574 precorrin-3B synthase; precorrin-3B synthase complement(1785133..1786497) Burkholderia ambifaria MC40-6 6178441 YP_001808296.1 CDS BamMC406_1593 NC_010551.1 1787002 1788237 D KEGG: bam:Bamb_1575 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 1787002..1788237 Burkholderia ambifaria MC40-6 6178516 YP_001808297.1 CDS cbiD NC_010551.1 1788237 1789325 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1788237..1789325 Burkholderia ambifaria MC40-6 6178563 YP_001808298.1 CDS BamMC406_1595 NC_010551.1 1789322 1790062 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 1789322..1790062 Burkholderia ambifaria MC40-6 6177880 YP_001808299.1 CDS BamMC406_1596 NC_010551.1 1790106 1790834 D KEGG: bam:Bamb_1578 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 1790106..1790834 Burkholderia ambifaria MC40-6 6177850 YP_001808300.1 CDS BamMC406_1597 NC_010551.1 1790876 1792072 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1579 major facilitator superfamily MFS_1; major facilitator transporter complement(1790876..1792072) Burkholderia ambifaria MC40-6 6177849 YP_001808301.1 CDS BamMC406_1598 NC_010551.1 1792192 1793244 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_4247 transposase, IS605 OrfB family; IS605 family transposase OrfB 1792192..1793244 Burkholderia ambifaria MC40-6 6177762 YP_001808302.1 CDS BamMC406_1599 NC_010551.1 1793285 1793572 D KEGG: bam:Bamb_1580 transcriptional regulator, MarR family; MarR family transcriptional regulator 1793285..1793572 Burkholderia ambifaria MC40-6 6177831 YP_001808303.1 CDS BamMC406_1600 NC_010551.1 1793716 1794420 R PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_1581 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(1793716..1794420) Burkholderia ambifaria MC40-6 6178170 YP_001808304.1 CDS BamMC406_1601 NC_010551.1 1794628 1795752 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_1582 porin, gram-negative type; porin complement(1794628..1795752) Burkholderia ambifaria MC40-6 6178126 YP_001808305.1 CDS BamMC406_1602 NC_010551.1 1796009 1798702 R PFAM: regulatory protein LuxR; KEGG: bam:Bamb_1583 ATP-dependent transcriptional regulator, MalT-like, LuxR family; ATP-dependent transcription regulator LuxR complement(1796009..1798702) Burkholderia ambifaria MC40-6 6178107 YP_001808306.1 CDS BamMC406_1603 NC_010551.1 1798984 1799925 D KEGG: bam:Bamb_1584 hypothetical protein; hypothetical protein 1798984..1799925 Burkholderia ambifaria MC40-6 6178054 YP_001808307.1 CDS BamMC406_1604 NC_010551.1 1799959 1800939 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_1585 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 1799959..1800939 Burkholderia ambifaria MC40-6 6177955 YP_001808308.1 CDS BamMC406_1605 NC_010551.1 1800950 1801798 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bam:Bamb_1586 taurine dioxygenase; taurine dioxygenase 1800950..1801798 Burkholderia ambifaria MC40-6 6177924 YP_001808309.1 CDS BamMC406_1606 NC_010551.1 1801915 1802970 D PFAM: protein of unknown function DUF849; KEGG: bam:Bamb_1587 protein of unknown function DUF849; hypothetical protein 1801915..1802970 Burkholderia ambifaria MC40-6 6176931 YP_001808310.1 CDS BamMC406_1607 NC_010551.1 1803133 1804461 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1588 major facilitator superfamily MFS_1; major facilitator transporter 1803133..1804461 Burkholderia ambifaria MC40-6 6177661 YP_001808311.1 CDS BamMC406_1608 NC_010551.1 1804494 1805069 D PFAM: protein of unknown function DUF1234; KEGG: bam:Bamb_1589 protein of unknown function DUF1234; hypothetical protein 1804494..1805069 Burkholderia ambifaria MC40-6 6177821 YP_001808312.1 CDS BamMC406_1609 NC_010551.1 1805400 1806566 D KEGG: bam:Bamb_1590 ABC transporter, periplasmic ligand binding protein; ABC transporter substrate-binding protein 1805400..1806566 Burkholderia ambifaria MC40-6 6176510 YP_001808313.1 CDS BamMC406_1610 NC_010551.1 1806616 1807695 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_1591 ABC transporter related; ABC transporter-like protein 1806616..1807695 Burkholderia ambifaria MC40-6 6177351 YP_001808314.1 CDS BamMC406_1611 NC_010551.1 1807742 1808614 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1592 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1807742..1808614 Burkholderia ambifaria MC40-6 6177260 YP_001808315.1 CDS BamMC406_1612 NC_010551.1 1808614 1809537 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1593 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1808614..1809537 Burkholderia ambifaria MC40-6 6177255 YP_001808316.1 CDS BamMC406_1613 NC_010551.1 1809725 1810777 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_4247 transposase, IS605 OrfB family; IS605 family transposase OrfB complement(1809725..1810777) Burkholderia ambifaria MC40-6 6178189 YP_001808317.1 CDS BamMC406_1614 NC_010551.1 1810897 1811334 D KEGG: bam:Bamb_1594 hypothetical protein; hypothetical protein 1810897..1811334 Burkholderia ambifaria MC40-6 6176587 YP_001808318.1 CDS BamMC406_1615 NC_010551.1 1811667 1812902 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_1595 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1811667..1812902 Burkholderia ambifaria MC40-6 6177090 YP_001808319.1 CDS BamMC406_1616 NC_010551.1 1812949 1816671 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: bam:Bamb_1596 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 1812949..1816671 Burkholderia ambifaria MC40-6 6176080 YP_001808320.1 CDS BamMC406_1617 NC_010551.1 1816735 1819317 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; KEGG: bam:Bamb_1597 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 1816735..1819317 Burkholderia ambifaria MC40-6 6176633 YP_001808321.1 CDS BamMC406_1618 NC_010551.1 1819437 1819649 D KEGG: bam:Bamb_1598 hypothetical protein; hypothetical protein 1819437..1819649 Burkholderia ambifaria MC40-6 6177110 YP_001808322.1 CDS BamMC406_1619 NC_010551.1 1819940 1820914 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bur:Bcep18194_A4851 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(1819940..1820914) Burkholderia ambifaria MC40-6 6177430 YP_001808323.1 CDS BamMC406_1620 NC_010551.1 1821038 1821136 R hypothetical protein complement(1821038..1821136) Burkholderia ambifaria MC40-6 6176058 YP_001808324.1 CDS BamMC406_1621 NC_010551.1 1821165 1822355 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_1599 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1821165..1822355 Burkholderia ambifaria MC40-6 6176076 YP_001808325.1 CDS BamMC406_1622 NC_010551.1 1822377 1823339 D PFAM: pyruvate carboxyltransferase; KEGG: bam:Bamb_1600 pyruvate carboxyltransferase; pyruvate carboxyltransferase 1822377..1823339 Burkholderia ambifaria MC40-6 6176108 YP_001808326.1 CDS BamMC406_1623 NC_010551.1 1823365 1823748 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bch:Bcen2424_1693 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1823365..1823748 Burkholderia ambifaria MC40-6 6176388 YP_001808327.1 CDS BamMC406_1624 NC_010551.1 1824005 1824832 D KEGG: bam:Bamb_1602 esterase/lipase-like protein; esterase/lipase-like protein 1824005..1824832 Burkholderia ambifaria MC40-6 6176407 YP_001808328.1 CDS BamMC406_1625 NC_010551.1 1824992 1825885 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1603 transcriptional regulator, LysR family; LysR family transcriptional regulator 1824992..1825885 Burkholderia ambifaria MC40-6 6176420 YP_001808329.1 CDS BamMC406_1626 NC_010551.1 1825953 1827410 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1604 major facilitator superfamily MFS_1; major facilitator transporter complement(1825953..1827410) Burkholderia ambifaria MC40-6 6176428 YP_001808330.1 CDS BamMC406_1627 NC_010551.1 1827872 1829092 R KEGG: bvi:Bcep1808_1621 hypothetical protein; hypothetical protein complement(1827872..1829092) Burkholderia ambifaria MC40-6 6176456 YP_001808331.1 CDS BamMC406_1628 NC_010551.1 1829296 1830396 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: bam:Bamb_1606 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1829296..1830396 Burkholderia ambifaria MC40-6 6176459 YP_001808332.1 CDS BamMC406_1629 NC_010551.1 1830572 1830943 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bam:Bamb_1607 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1830572..1830943 Burkholderia ambifaria MC40-6 6176477 YP_001808333.1 CDS BamMC406_1630 NC_010551.1 1830940 1831080 D hypothetical protein 1830940..1831080 Burkholderia ambifaria MC40-6 6176497 YP_001808334.1 CDS BamMC406_1631 NC_010551.1 1831207 1831662 D PFAM: regulatory protein MarR; KEGG: bam:Bamb_1608 transcriptional regulator, MarR family; MarR family transcriptional regulator 1831207..1831662 Burkholderia ambifaria MC40-6 6176549 YP_001808335.1 CDS BamMC406_1632 NC_010551.1 1831773 1832516 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_1609 FR47 domain protein; N-acetyltransferase GCN5 complement(1831773..1832516) Burkholderia ambifaria MC40-6 6176573 YP_001808336.1 CDS BamMC406_1633 NC_010551.1 1832658 1832984 R KEGG: bam:Bamb_1610 hypothetical protein; hypothetical protein complement(1832658..1832984) Burkholderia ambifaria MC40-6 6176598 YP_001808337.1 CDS BamMC406_1634 NC_010551.1 1833060 1833386 R KEGG: bam:Bamb_1611 hypothetical protein; hypothetical protein complement(1833060..1833386) Burkholderia ambifaria MC40-6 6176622 YP_001808338.1 CDS BamMC406_1635 NC_010551.1 1833451 1833870 R PFAM: OsmC family protein; KEGG: bam:Bamb_1612 OsmC family protein; OsmC family protein complement(1833451..1833870) Burkholderia ambifaria MC40-6 6176636 YP_001808339.1 CDS BamMC406_1636 NC_010551.1 1834144 1834608 R PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_1613 endoribonuclease L-PSP; endoribonuclease L-PSP complement(1834144..1834608) Burkholderia ambifaria MC40-6 6176682 YP_001808340.1 CDS BamMC406_1637 NC_010551.1 1834873 1835805 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1614 transcriptional regulator, LysR family; LysR family transcriptional regulator 1834873..1835805 Burkholderia ambifaria MC40-6 6176688 YP_001808341.1 CDS BamMC406_1638 NC_010551.1 1835885 1836592 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_1615 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1835885..1836592) Burkholderia ambifaria MC40-6 6176698 YP_001808342.1 CDS BamMC406_1639 NC_010551.1 1837069 1837497 R KEGG: bam:Bamb_1637 transcriptional regulator, LuxR family; hypothetical protein complement(1837069..1837497) Burkholderia ambifaria MC40-6 6176734 YP_001808343.1 CDS BamMC406_1640 NC_010551.1 1837693 1838181 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bam:Bamb_1641 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(1837693..1838181) Burkholderia ambifaria MC40-6 6176764 YP_001808344.1 CDS BamMC406_1641 NC_010551.1 1838625 1838912 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1838625..1838912 Burkholderia ambifaria MC40-6 6176777 YP_001808345.1 CDS BamMC406_1642 NC_010551.1 1838922 1839899 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: bam:Bamb_1643 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(1838922..1839899) Burkholderia ambifaria MC40-6 6176794 YP_001808346.1 CDS BamMC406_1643 NC_010551.1 1840080 1840226 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: bcn:Bcen_6357 Cyd operon protein YbgT; cyd operon protein YbgT 1840080..1840226 Burkholderia ambifaria MC40-6 6176816 YP_001808347.1 CDS BamMC406_1644 NC_010551.1 1840223 1840840 D KEGG: bam:Bamb_1644 hypothetical protein; hypothetical protein 1840223..1840840 Burkholderia ambifaria MC40-6 6176853 YP_001808348.1 CDS BamMC406_1645 NC_010551.1 1840941 1842041 R PFAM: TrkA-N domain protein; Saccharopine dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bam:Bamb_1645 saccharopine dehydrogenase; saccharopine dehydrogenase complement(1840941..1842041) Burkholderia ambifaria MC40-6 6176906 YP_001808349.1 CDS BamMC406_1646 NC_010551.1 1842557 1843021 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bch:Bcen2424_1724 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1842557..1843021) Burkholderia ambifaria MC40-6 6176955 YP_001808350.1 CDS BamMC406_1647 NC_010551.1 1843388 1843924 D KEGG: bam:Bamb_1647 hypothetical protein; hypothetical protein 1843388..1843924 Burkholderia ambifaria MC40-6 6176995 YP_001808351.1 CDS BamMC406_1648 NC_010551.1 1844053 1844484 D KEGG: bam:Bamb_1648 hypothetical protein; hypothetical protein 1844053..1844484 Burkholderia ambifaria MC40-6 6177009 YP_001808352.1 CDS BamMC406_1649 NC_010551.1 1844533 1844895 R KEGG: bam:Bamb_1649 hypothetical protein; hypothetical protein complement(1844533..1844895) Burkholderia ambifaria MC40-6 6177021 YP_001808353.1 CDS BamMC406_1650 NC_010551.1 1844908 1845696 R KEGG: bam:Bamb_1650 membrane protein; membrane protein complement(1844908..1845696) Burkholderia ambifaria MC40-6 6177057 YP_001808354.1 CDS BamMC406_1651 NC_010551.1 1845751 1846794 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_1651 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(1845751..1846794) Burkholderia ambifaria MC40-6 6177078 YP_001808355.1 CDS BamMC406_1652 NC_010551.1 1847117 1848082 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_1652 gluconate 2-dehydrogenase; gluconate 2-dehydrogenase complement(1847117..1848082) Burkholderia ambifaria MC40-6 6177101 YP_001808356.1 CDS BamMC406_1653 NC_010551.1 1848088 1849368 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_1653 major facilitator superfamily MFS_1; major facilitator transporter complement(1848088..1849368) Burkholderia ambifaria MC40-6 6177167 YP_001808357.1 CDS BamMC406_1654 NC_010551.1 1849529 1850521 R PFAM: PfkB domain protein; KEGG: bam:Bamb_1654 PfkB domain protein; ribokinase-like domain-containing protein complement(1849529..1850521) Burkholderia ambifaria MC40-6 6177187 YP_001808358.1 CDS BamMC406_1655 NC_010551.1 1850550 1851314 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_1655 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(1850550..1851314) Burkholderia ambifaria MC40-6 6177215 YP_001808359.1 CDS BamMC406_1656 NC_010551.1 1851478 1852371 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1656 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1851478..1852371) Burkholderia ambifaria MC40-6 6177239 YP_001808360.1 CDS BamMC406_1657 NC_010551.1 1852530 1853561 D PFAM: conserved hypothetical protein; KEGG: bam:Bamb_1657 conserved hypothetical protein 698; hypothetical protein 1852530..1853561 Burkholderia ambifaria MC40-6 6177254 YP_001808361.1 CDS BamMC406_1658 NC_010551.1 1853629 1855410 D PFAM: CBS domain containing protein; Chloride channel core; KEGG: bam:Bamb_1658 putative voltage-gated ClC-type chloride channel ClcB; putative voltage-gated ClC-type chloride channel ClcB 1853629..1855410 Burkholderia ambifaria MC40-6 6177293 YP_001808362.1 CDS BamMC406_1659 NC_010551.1 1855483 1856103 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_1659 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1855483..1856103) Burkholderia ambifaria MC40-6 6177314 YP_001808363.1 CDS BamMC406_1660 NC_010551.1 1856319 1857404 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_1660 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1856319..1857404 Burkholderia ambifaria MC40-6 6177341 YP_001808364.1 CDS BamMC406_1661 NC_010551.1 1857401 1860544 D PFAM: acriflavin resistance protein; KEGG: bam:Bamb_1661 acriflavin resistance protein; acriflavin resistance protein 1857401..1860544 Burkholderia ambifaria MC40-6 6177360 YP_001808365.1 CDS BamMC406_1662 NC_010551.1 1860547 1862145 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_1662 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 1860547..1862145 Burkholderia ambifaria MC40-6 6177395 YP_001808366.1 CDS BamMC406_1663 NC_010551.1 1862272 1863303 D PFAM: regulatory protein MerR; Albicidin resistance; Transcription regulator MerR DNA binding; KEGG: bam:Bamb_1663 transcriptional regulator, MerR family; MerR family transcriptional regulator 1862272..1863303 Burkholderia ambifaria MC40-6 6177416 YP_001808367.1 CDS BamMC406_1664 NC_010551.1 1863390 1863917 R KEGG: bam:Bamb_1667 hypothetical protein; hypothetical protein complement(1863390..1863917) Burkholderia ambifaria MC40-6 6176026 YP_001808368.1 CDS BamMC406_1665 NC_010551.1 1863990 1865387 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: bam:Bamb_1668 sigma54 specific transcriptional regulator, fis family; PAS modulated sigma54 specific transcriptional regulator complement(1863990..1865387) Burkholderia ambifaria MC40-6 6176070 YP_001808369.1 CDS BamMC406_1666 NC_010551.1 1865652 1866521 D PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_1669 beta-lactamase domain protein; beta-lactamase domain-containing protein 1865652..1866521 Burkholderia ambifaria MC40-6 6176106 YP_001808370.1 CDS BamMC406_1667 NC_010551.1 1866550 1868229 D PFAM: protein of unknown function DUF442; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_1670 protein of unknown function DUF442; hypothetical protein 1866550..1868229 Burkholderia ambifaria MC40-6 6176386 YP_001808371.1 CDS BamMC406_1668 NC_010551.1 1868248 1869054 D PFAM: protein of unknown function DUF81; KEGG: bam:Bamb_1671 protein of unknown function DUF81; hypothetical protein 1868248..1869054 Burkholderia ambifaria MC40-6 6176395 YP_001808372.1 CDS BamMC406_1669 NC_010551.1 1869159 1869980 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1672 binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase complement(1869159..1869980) Burkholderia ambifaria MC40-6 6176411 YP_001808373.1 CDS BamMC406_1670 NC_010551.1 1869977 1870906 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_1673 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1869977..1870906) Burkholderia ambifaria MC40-6 6176422 YP_001808374.1 CDS BamMC406_1671 NC_010551.1 1870903 1872063 R TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_1674 spermidine/putrescine ABC transporter ATPase subunit; spermidine/putrescine ABC transporter ATPase complement(1870903..1872063) Burkholderia ambifaria MC40-6 6176437 YP_001808375.1 CDS BamMC406_1672 NC_010551.1 1872150 1873244 R PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_1675 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1872150..1873244) Burkholderia ambifaria MC40-6 6176457 YP_001808376.1 CDS BamMC406_1674 NC_010551.1 1873601 1873804 D PFAM: protein of unknown function DUF1289; KEGG: bam:Bamb_1676 protein of unknown function DUF1289; hypothetical protein 1873601..1873804 Burkholderia ambifaria MC40-6 6176496 YP_001808377.1 CDS BamMC406_1675 NC_010551.1 1873880 1874521 R PFAM: OmpW family protein; KEGG: bam:Bamb_1680 OmpW family protein; OmpW family protein complement(1873880..1874521) Burkholderia ambifaria MC40-6 6176543 YP_001808378.1 CDS BamMC406_1676 NC_010551.1 1874587 1875777 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: bam:Bamb_1681 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(1874587..1875777) Burkholderia ambifaria MC40-6 6176576 YP_001808379.1 CDS BamMC406_1677 NC_010551.1 1875905 1877341 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_1682 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase complement(1875905..1877341) Burkholderia ambifaria MC40-6 6176601 YP_001808380.1 CDS BamMC406_1678 NC_010551.1 1877576 1877941 D KEGG: bam:Bamb_1683 hypothetical protein; hypothetical protein 1877576..1877941 Burkholderia ambifaria MC40-6 6176623 YP_001808381.1 CDS BamMC406_1679 NC_010551.1 1877976 1878440 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bvi:Bcep1808_1700 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1877976..1878440) Burkholderia ambifaria MC40-6 6176644 YP_001808382.1 CDS BamMC406_1680 NC_010551.1 1878571 1879620 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bvi:Bcep1808_1701 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 1878571..1879620 Burkholderia ambifaria MC40-6 6176686 YP_001808383.1 CDS BamMC406_1681 NC_010551.1 1879836 1881404 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1709 ABC transporter related; ABC transporter-like protein complement(1879836..1881404) Burkholderia ambifaria MC40-6 6176690 YP_001808384.1 CDS BamMC406_1682 NC_010551.1 1881596 1882048 D KEGG: bam:Bamb_1710 hypothetical protein; hypothetical protein 1881596..1882048 Burkholderia ambifaria MC40-6 6176703 YP_001808385.1 CDS BamMC406_1683 NC_010551.1 1882176 1884473 R PFAM: AsmA family protein; KEGG: bam:Bamb_1711 AsmA family protein; AsmA family protein complement(1882176..1884473) Burkholderia ambifaria MC40-6 6176724 YP_001808386.1 CDS BamMC406_1684 NC_010551.1 1884625 1885326 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1712 ABC transporter related; ABC transporter-like protein 1884625..1885326 Burkholderia ambifaria MC40-6 6176750 YP_001808387.1 CDS BamMC406_1685 NC_010551.1 1885323 1886126 D PFAM: conserved hypothetical protein; KEGG: bam:Bamb_1713 conserved hypothetical protein 245; hypothetical protein 1885323..1886126 Burkholderia ambifaria MC40-6 6176569 YP_001808388.1 CDS BamMC406_1686 NC_010551.1 1886170 1886643 R KEGG: bam:Bamb_1714 hypothetical protein; hypothetical protein complement(1886170..1886643) Burkholderia ambifaria MC40-6 6176785 YP_001808389.1 CDS BamMC406_1687 NC_010551.1 1886848 1887399 R KEGG: bam:Bamb_1715 hypothetical protein; hypothetical protein complement(1886848..1887399) Burkholderia ambifaria MC40-6 6176806 YP_001808390.1 CDS BamMC406_1688 NC_010551.1 1887560 1888576 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_1716 alcohol dehydrogenase, zinc-binding domain protein; zinc-binding alcohol dehydrogenase family protein complement(1887560..1888576) Burkholderia ambifaria MC40-6 6176818 YP_001808391.1 CDS BamMC406_1689 NC_010551.1 1888700 1889641 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1717 transcriptional regulator, LysR family; LysR family transcriptional regulator 1888700..1889641 Burkholderia ambifaria MC40-6 6176860 YP_001808392.1 CDS BamMC406_1690 NC_010551.1 1889840 1890685 D KEGG: bam:Bamb_1718 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 1889840..1890685 Burkholderia ambifaria MC40-6 6176914 YP_001808393.1 CDS BamMC406_1691 NC_010551.1 1890761 1891945 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(1890761..1891945) Burkholderia ambifaria MC40-6 6176958 YP_001808394.1 CDS BamMC406_1692 NC_010551.1 1892057 1892599 R KEGG: bam:Bamb_1720 hypothetical protein; hypothetical protein complement(1892057..1892599) Burkholderia ambifaria MC40-6 6177005 YP_001808395.1 CDS BamMC406_1693 NC_010551.1 1892620 1892739 R hypothetical protein complement(1892620..1892739) Burkholderia ambifaria MC40-6 6177012 YP_001808396.1 CDS BamMC406_1694 NC_010551.1 1892788 1893714 R PFAM: PfkB domain protein; KEGG: bam:Bamb_1721 PfkB domain protein; ribokinase-like domain-containing protein complement(1892788..1893714) Burkholderia ambifaria MC40-6 6177468 YP_001808397.1 CDS rimO NC_010551.1 1893718 1895079 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(1893718..1895079) Burkholderia ambifaria MC40-6 6177419 YP_001808398.1 CDS BamMC406_1697 NC_010551.1 1895562 1896512 D KEGG: bur:Bcep18194_A5084 hypothetical protein; hypothetical protein 1895562..1896512 Burkholderia ambifaria MC40-6 6177170 YP_001808399.1 CDS BamMC406_1698 NC_010551.1 1896801 1897052 D KEGG: bam:Bamb_1723 hypothetical protein; hypothetical protein 1896801..1897052 Burkholderia ambifaria MC40-6 6176550 YP_001808400.1 CDS BamMC406_1699 NC_010551.1 1897430 1897996 R TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bch:Bcen2424_1788 polyhydroxyalkonate synthesis repressor, PhaR; polyhydroxyalkonate synthesis repressor PhaR complement(1897430..1897996) Burkholderia ambifaria MC40-6 6177303 YP_001808401.1 CDS BamMC406_1700 NC_010551.1 1898115 1898855 R catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis; acetyacetyl-CoA reductase complement(1898115..1898855) Burkholderia ambifaria MC40-6 6177158 YP_001808402.1 CDS BamMC406_1701 NC_010551.1 1898975 1900156 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(1898975..1900156) Burkholderia ambifaria MC40-6 6177136 YP_001808403.1 CDS BamMC406_1702 NC_010551.1 1900257 1902047 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bam:Bamb_1729 poly(R)-hydroxyalkanoic acid synthase, class I; poly(R)-hydroxyalkanoic acid synthase complement(1900257..1902047) Burkholderia ambifaria MC40-6 6177072 YP_001808404.1 CDS BamMC406_1703 NC_010551.1 1902497 1903336 R PFAM: protein of unknown function DUF152; KEGG: bam:Bamb_1730 protein of unknown function DUF152; hypothetical protein complement(1902497..1903336) Burkholderia ambifaria MC40-6 6177177 YP_001808405.1 CDS BamMC406_1704 NC_010551.1 1903343 1904566 R KEGG: bam:Bamb_1731 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(1903343..1904566) Burkholderia ambifaria MC40-6 6176472 YP_001808406.1 CDS BamMC406_1705 NC_010551.1 1904608 1905432 D KEGG: bam:Bamb_1732 competence lipoprotein ComL; competence lipoprotein ComL 1904608..1905432 Burkholderia ambifaria MC40-6 6176054 YP_001808407.1 CDS BamMC406_1706 NC_010551.1 1905510 1907753 R SMART: helicase c2; KEGG: bam:Bamb_1733 helicase C2; helicase c2 complement(1905510..1907753) Burkholderia ambifaria MC40-6 6176446 YP_001808408.1 CDS BamMC406_1707 NC_010551.1 1907809 1908024 R PFAM: protein of unknown function DUF465; KEGG: bam:Bamb_1734 protein of unknown function DUF465; hypothetical protein complement(1907809..1908024) Burkholderia ambifaria MC40-6 6177002 YP_001808409.1 CDS BamMC406_1708 NC_010551.1 1908102 1908854 R KEGG: bam:Bamb_1735 hypothetical protein; hypothetical protein complement(1908102..1908854) Burkholderia ambifaria MC40-6 6175977 YP_001808410.1 CDS BamMC406_1709 NC_010551.1 1908896 1911337 D PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: bcn:Bcen_6281 RNA binding S1; RNA-binding S1 domain-containing protein 1908896..1911337 Burkholderia ambifaria MC40-6 6177414 YP_001808411.1 CDS BamMC406_1710 NC_010551.1 1911447 1913360 R PFAM: K potassium transporter; KEGG: bam:Bamb_1737 K+ potassium transporter; K potassium transporter complement(1911447..1913360) Burkholderia ambifaria MC40-6 6177393 YP_001808412.1 CDS BamMC406_1711 NC_010551.1 1913634 1914230 R PFAM: phosphoribosyltransferase; KEGG: bam:Bamb_1738 phosphoribosyltransferase; phosphoribosyltransferase complement(1913634..1914230) Burkholderia ambifaria MC40-6 6177358 YP_001808413.1 CDS BamMC406_1712 NC_010551.1 1914239 1915585 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(1914239..1915585) Burkholderia ambifaria MC40-6 6177339 YP_001808414.1 CDS hisZ NC_010551.1 1915699 1916847 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(1915699..1916847) Burkholderia ambifaria MC40-6 6177306 YP_001808415.1 CDS BamMC406_1714 NC_010551.1 1916960 1917151 R KEGG: bam:Bamb_1741 hypothetical protein; hypothetical protein complement(1916960..1917151) Burkholderia ambifaria MC40-6 6177266 YP_001808416.1 CDS BamMC406_1715 NC_010551.1 1917188 1918087 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: bam:Bamb_1742 HflC protein; HflC protein complement(1917188..1918087) Burkholderia ambifaria MC40-6 6177242 YP_001808417.1 CDS BamMC406_1716 NC_010551.1 1918102 1919427 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: bam:Bamb_1743 HflK protein; HflK protein complement(1918102..1919427) Burkholderia ambifaria MC40-6 6177228 YP_001808418.1 CDS BamMC406_1717 NC_010551.1 1919511 1920701 R TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: bam:Bamb_1744 small GTP-binding protein; GTP-binding proten HflX complement(1919511..1920701) Burkholderia ambifaria MC40-6 6177198 YP_001808419.1 CDS hfq NC_010551.1 1920759 1921001 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(1920759..1921001) Burkholderia ambifaria MC40-6 6177182 YP_001808420.1 CDS engA NC_010551.1 1921156 1922493 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1921156..1922493) Burkholderia ambifaria MC40-6 6177116 YP_001808421.1 CDS BamMC406_1720 NC_010551.1 1922741 1923793 R TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: bam:Bamb_1747 pyrrolo-quinoline quinone; outer membrane assembly lipoprotein YfgL complement(1922741..1923793) Burkholderia ambifaria MC40-6 6177079 YP_001808422.1 CDS BamMC406_1721 NC_010551.1 1923927 1924556 R KEGG: bam:Bamb_1748 hypothetical protein; hypothetical protein complement(1923927..1924556) Burkholderia ambifaria MC40-6 6177055 YP_001808423.1 CDS hisS NC_010551.1 1924613 1925953 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1924613..1925953) Burkholderia ambifaria MC40-6 6177019 YP_001808424.1 CDS ispG NC_010551.1 1925970 1927274 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1925970..1927274) Burkholderia ambifaria MC40-6 6176597 YP_001808425.1 CDS BamMC406_1724 NC_010551.1 1927381 1928400 R SMART: helix-turn-helix domain protein; KEGG: bam:Bamb_1751 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1927381..1928400) Burkholderia ambifaria MC40-6 6178130 YP_001808426.1 CDS BamMC406_1725 NC_010551.1 1928577 1929716 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: bam:Bamb_1752 radical SAM enzyme, Cfr family; radical SAM protein complement(1928577..1929716) Burkholderia ambifaria MC40-6 6176927 YP_001808427.1 CDS ndk NC_010551.1 1929772 1930197 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1929772..1930197) Burkholderia ambifaria MC40-6 6177193 YP_001808428.1 CDS BamMC406_1727 NC_010551.1 1930447 1931145 D PFAM: protein of unknown function UPF0005; KEGG: bam:Bamb_1754 protein of unknown function UPF0005; hypothetical protein 1930447..1931145 Burkholderia ambifaria MC40-6 6176924 YP_001808429.1 CDS rumA NC_010551.1 1931211 1932665 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(1931211..1932665) Burkholderia ambifaria MC40-6 6176551 YP_001808430.1 CDS BamMC406_1729 NC_010551.1 1932813 1933667 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bam:Bamb_1756 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1932813..1933667 Burkholderia ambifaria MC40-6 6177373 YP_001808431.1 CDS BamMC406_1730 NC_010551.1 1933695 1934471 R KEGG: bam:Bamb_1757 3'-5' exonuclease; 3'-5' exonuclease complement(1933695..1934471) Burkholderia ambifaria MC40-6 6177269 YP_001808432.1 CDS BamMC406_1731 NC_010551.1 1934475 1935560 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(1934475..1935560) Burkholderia ambifaria MC40-6 6176930 YP_001808433.1 CDS BamMC406_1732 NC_010551.1 1935572 1936459 R PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: bam:Bamb_1759 peptidase M23B; peptidase M23 complement(1935572..1936459) Burkholderia ambifaria MC40-6 6176613 YP_001808434.1 CDS BamMC406_1733 NC_010551.1 1936465 1937412 R KEGG: bam:Bamb_1760 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(1936465..1937412) Burkholderia ambifaria MC40-6 6176744 YP_001808435.1 CDS surE NC_010551.1 1937409 1938170 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(1937409..1938170) Burkholderia ambifaria MC40-6 6176870 YP_001808436.1 CDS BamMC406_1735 NC_010551.1 1938377 1939582 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_1762 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(1938377..1939582) Burkholderia ambifaria MC40-6 6176699 YP_001808437.1 CDS recR NC_010551.1 1939631 1940227 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1939631..1940227) Burkholderia ambifaria MC40-6 6177365 YP_001808438.1 CDS BamMC406_1737 NC_010551.1 1940268 1940594 R PFAM: conserved hypothetical protein; KEGG: bam:Bamb_1764 hypothetical protein; hypothetical protein complement(1940268..1940594) Burkholderia ambifaria MC40-6 6177091 YP_001808439.1 CDS BamMC406_1738 NC_010551.1 1940689 1943130 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(1940689..1943130) Burkholderia ambifaria MC40-6 6177273 YP_001808440.1 CDS BamMC406_1739 NC_010551.1 1943760 1944086 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bmu:Bmul_1445 thioredoxin; thioredoxin 1943760..1944086 Burkholderia ambifaria MC40-6 6177424 YP_001808441.1 CDS rho NC_010551.1 1944282 1945544 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1944282..1945544 Burkholderia ambifaria MC40-6 6177457 YP_001808442.1 CDS BamMC406_1741 NC_010551.1 1945673 1946173 D PFAM: regulatory protein MerR; KEGG: bam:Bamb_1768 transcriptional regulator, MerR family; MerR family transcriptional regulator 1945673..1946173 Burkholderia ambifaria MC40-6 6177077 YP_001808443.1 CDS BamMC406_1742 NC_010551.1 1946170 1947726 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1769 major facilitator superfamily MFS_1; major facilitator transporter 1946170..1947726 Burkholderia ambifaria MC40-6 6177025 YP_001808444.1 CDS BamMC406_1743 NC_010551.1 1947765 1948595 D PFAM: protein of unknown function DUF980; KEGG: bam:Bamb_1770 protein of unknown function DUF980; hypothetical protein 1947765..1948595 Burkholderia ambifaria MC40-6 6176567 YP_001808445.1 CDS rpmE2 NC_010551.1 1948754 1949017 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1948754..1949017 Burkholderia ambifaria MC40-6 6178166 YP_001808446.1 CDS BamMC406_1745 NC_010551.1 1949234 1950991 D KEGG: bam:Bamb_1772 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; glycosyltransferase 1949234..1950991 Burkholderia ambifaria MC40-6 6178129 YP_001808447.1 CDS BamMC406_1746 NC_010551.1 1950994 1952349 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bam:Bamb_1773 MATE efflux family protein; MATE efflux family protein 1950994..1952349 Burkholderia ambifaria MC40-6 6177274 YP_001808448.1 CDS BamMC406_1747 NC_010551.1 1952365 1953330 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1952365..1953330) Burkholderia ambifaria MC40-6 6176412 YP_001808449.1 CDS BamMC406_1748 NC_010551.1 1953333 1954448 R PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; KEGG: bam:Bamb_1775 branched-chain alpha-keto acid dehydrogenase subunit E2; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(1953333..1954448) Burkholderia ambifaria MC40-6 6176813 YP_001808450.1 CDS BamMC406_1749 NC_010551.1 1954453 1955457 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: bam:Bamb_1776 transketolase, central region; transketolase central region complement(1954453..1955457) Burkholderia ambifaria MC40-6 6176495 YP_001808451.1 CDS BamMC406_1750 NC_010551.1 1955526 1956509 R PFAM: dehydrogenase E1 component; KEGG: bam:Bamb_1777 pyruvate dehydrogenase (acetyl-transferring); pyruvate dehydrogenase complement(1955526..1956509) Burkholderia ambifaria MC40-6 6177034 YP_001808452.1 CDS BamMC406_1751 NC_010551.1 1956608 1957666 R PFAM: ATP-NAD/AcoX kinase; KEGG: bam:Bamb_1778 ATP-NAD/AcoX kinase; ATP-NAD/AcoX kinase complement(1956608..1957666) Burkholderia ambifaria MC40-6 6177298 YP_001808453.1 CDS BamMC406_1752 NC_010551.1 1958191 1960122 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_1780 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 1958191..1960122 Burkholderia ambifaria MC40-6 6176756 YP_001808454.1 CDS BamMC406_1753 NC_010551.1 1960151 1960585 R PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_1781 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(1960151..1960585) Burkholderia ambifaria MC40-6 6176450 YP_001808455.1 CDS BamMC406_1754 NC_010551.1 1960569 1961030 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bam:Bamb_1782 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1960569..1961030) Burkholderia ambifaria MC40-6 6177342 YP_001808456.1 CDS BamMC406_1755 NC_010551.1 1961331 1961942 D KEGG: bam:Bamb_1783 hypothetical protein; hypothetical protein 1961331..1961942 Burkholderia ambifaria MC40-6 6177405 YP_001808457.1 CDS BamMC406_1756 NC_010551.1 1962031 1962462 D PFAM: protein of unknown function DUF937; KEGG: bam:Bamb_1784 protein of unknown function DUF937; hypothetical protein 1962031..1962462 Burkholderia ambifaria MC40-6 6176084 YP_001808458.1 CDS BamMC406_1757 NC_010551.1 1962591 1965188 R KEGG: bam:Bamb_1785 ATPase AAA-2 domain protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(1962591..1965188) Burkholderia ambifaria MC40-6 6176078 YP_001808459.1 CDS BamMC406_1758 NC_010551.1 1965334 1965852 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bam:Bamb_1786 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(1965334..1965852) Burkholderia ambifaria MC40-6 6176732 YP_001808460.1 CDS BamMC406_1759 NC_010551.1 1966114 1966674 D PFAM: globin; KEGG: bam:Bamb_1787 globin; globin 1966114..1966674 Burkholderia ambifaria MC40-6 6176430 YP_001808461.1 CDS BamMC406_1760 NC_010551.1 1966752 1967228 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: bch:Bcen2424_1850 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein complement(1966752..1967228) Burkholderia ambifaria MC40-6 6177172 YP_001808462.1 CDS BamMC406_1761 NC_010551.1 1967239 1967496 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bam:Bamb_1789 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 complement(1967239..1967496) Burkholderia ambifaria MC40-6 6176544 YP_001808463.1 CDS BamMC406_1762 NC_010551.1 1967516 1968763 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: bam:Bamb_1790 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein complement(1967516..1968763) Burkholderia ambifaria MC40-6 6177292 YP_001808464.1 CDS BamMC406_1763 NC_010551.1 1968987 1970438 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(1968987..1970438) Burkholderia ambifaria MC40-6 6177241 YP_001808465.1 CDS BamMC406_1764 NC_010551.1 1970453 1971781 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(1970453..1971781) Burkholderia ambifaria MC40-6 6176435 YP_001808466.1 CDS BamMC406_1765 NC_010551.1 1971838 1973076 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(1971838..1973076) Burkholderia ambifaria MC40-6 6177192 YP_001808467.1 CDS BamMC406_1766 NC_010551.1 1973275 1973766 D PFAM: protein of unknown function DUF498; KEGG: bam:Bamb_1794 protein of unknown function DUF498; hypothetical protein 1973275..1973766 Burkholderia ambifaria MC40-6 6176488 YP_001808468.1 CDS BamMC406_1767 NC_010551.1 1973902 1975578 D PFAM: glycosyl transferase family 39; KEGG: bam:Bamb_1795 glycosyl transferase, family 39; glycosyl transferase family protein 1973902..1975578 Burkholderia ambifaria MC40-6 6177321 YP_001808469.1 CDS BamMC406_1768 NC_010551.1 1975592 1975963 D KEGG: bam:Bamb_1796 hypothetical protein; hypothetical protein 1975592..1975963 Burkholderia ambifaria MC40-6 6177194 YP_001808470.1 CDS BamMC406_1769 NC_010551.1 1976050 1977264 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bam:Bamb_1797 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1976050..1977264 Burkholderia ambifaria MC40-6 6176692 YP_001808471.1 CDS BamMC406_1770 NC_010551.1 1977271 1978305 D PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_1798 glycosyl transferase, family 2; glycosyl transferase family protein 1977271..1978305 Burkholderia ambifaria MC40-6 6176675 YP_001808472.1 CDS BamMC406_1771 NC_010551.1 1978302 1979249 D PFAM: formyl transferase domain protein; KEGG: bam:Bamb_1799 hypothetical protein; putative formyltransferase 1978302..1979249 Burkholderia ambifaria MC40-6 6177323 YP_001808473.1 CDS BamMC406_1772 NC_010551.1 1979246 1980301 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bam:Bamb_1800 hypothetical protein; NAD-dependent epimerase/dehydratase family protein 1979246..1980301 Burkholderia ambifaria MC40-6 6176867 YP_001808474.1 CDS BamMC406_1773 NC_010551.1 1980314 1981210 D PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_1801 polysaccharide deacetylase; polysaccharide deacetylase 1980314..1981210 Burkholderia ambifaria MC40-6 6177022 YP_001808475.1 CDS BamMC406_1774 NC_010551.1 1981318 1981779 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bur:Bcep18194_A5165 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 1981318..1981779 Burkholderia ambifaria MC40-6 6177316 YP_001808476.1 CDS BamMC406_1775 NC_010551.1 1982112 1983932 D PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: bam:Bamb_1803 PhoH family protein; PhoH family protein 1982112..1983932 Burkholderia ambifaria MC40-6 6177301 YP_001808477.1 CDS BamMC406_1776 NC_010551.1 1984173 1985234 D PFAM: NLP/P60 protein; KEGG: bam:Bamb_1804 NLP/P60 protein; NLP/P60 protein 1984173..1985234 Burkholderia ambifaria MC40-6 6176740 YP_001808478.1 CDS BamMC406_1777 NC_010551.1 1985353 1986363 R PFAM: phosphate transporter; KEGG: bam:Bamb_1805 phosphate transporter; phosphate transporter complement(1985353..1986363) Burkholderia ambifaria MC40-6 6177234 YP_001808479.1 CDS BamMC406_1778 NC_010551.1 1986374 1987000 R PFAM: protein of unknown function DUF47; KEGG: bam:Bamb_1806 protein of unknown function DUF47; hypothetical protein complement(1986374..1987000) Burkholderia ambifaria MC40-6 6176568 YP_001808480.1 CDS BamMC406_1779 NC_010551.1 1987139 1988521 R unwinds double stranded DNA; replicative DNA helicase complement(1987139..1988521) Burkholderia ambifaria MC40-6 6179081 YP_001808481.1 CDS rplI NC_010551.1 1988665 1989117 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(1988665..1989117) Burkholderia ambifaria MC40-6 6176726 YP_001808482.1 CDS rpsR NC_010551.1 1989145 1989420 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1989145..1989420) Burkholderia ambifaria MC40-6 6177014 YP_001808483.1 CDS BamMC406_1782 NC_010551.1 1989425 1989724 R KEGG: bam:Bamb_1810 primosomal replication protein N-like protein; primosomal replication protein N-like protein complement(1989425..1989724) Burkholderia ambifaria MC40-6 6176713 YP_001808484.1 CDS rpsF NC_010551.1 1989765 1990139 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1989765..1990139) Burkholderia ambifaria MC40-6 6176582 YP_001808485.1 CDS BamMC406_1784 NC_010551.1 1990381 1991283 R KEGG: bam:Bamb_1812 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor complement(1990381..1991283) Burkholderia ambifaria MC40-6 6176596 YP_001808486.1 CDS BamMC406_1785 NC_010551.1 1991273 1991914 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1991273..1991914) Burkholderia ambifaria MC40-6 6177121 YP_001808487.1 CDS BamMC406_1786 NC_010551.1 1992086 1992997 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1814 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1992086..1992997) Burkholderia ambifaria MC40-6 6176664 YP_001808488.1 CDS BamMC406_1787 NC_010551.1 1993169 1994944 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 1993169..1994944 Burkholderia ambifaria MC40-6 6176508 YP_001808489.1 CDS BamMC406_1788 NC_010551.1 1994989 1995798 D KEGG: bam:Bamb_1816 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 1994989..1995798 Burkholderia ambifaria MC40-6 6176626 YP_001808490.1 CDS BamMC406_1789 NC_010551.1 1995840 1996733 D KEGG: bam:Bamb_1817 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 1995840..1996733 Burkholderia ambifaria MC40-6 6176120 YP_001808491.1 CDS BamMC406_1790 NC_010551.1 1997138 1997608 D PFAM: Peptidoglycan-binding LysM; KEGG: bam:Bamb_1818 hypothetical protein; LysM domain/BON superfamily protein 1997138..1997608 Burkholderia ambifaria MC40-6 6177361 YP_001808492.1 CDS BamMC406_1791 NC_010551.1 1997692 1998714 R KEGG: bam:Bamb_1819 L-asparaginases, type II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; L-asparaginase complement(1997692..1998714) Burkholderia ambifaria MC40-6 6176389 YP_001808493.1 CDS BamMC406_1792 NC_010551.1 1998989 1999279 D PFAM: PsiF repeat protein; KEGG: bam:Bamb_1820 PsiF repeat protein; PsiF repeat-containing protein 1998989..1999279 Burkholderia ambifaria MC40-6 6176065 YP_001808494.1 CDS BamMC406_1793 NC_010551.1 1999599 2000057 D KEGG: bam:Bamb_1821 hypothetical protein; hypothetical protein 1999599..2000057 Burkholderia ambifaria MC40-6 6176452 YP_001808495.1 CDS BamMC406_1794 NC_010551.1 2000296 2000883 D KEGG: bam:Bamb_1822 hypothetical protein; hypothetical protein 2000296..2000883 Burkholderia ambifaria MC40-6 6176878 YP_001808496.1 CDS BamMC406_1795 NC_010551.1 2000980 2002044 R PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_1823 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2000980..2002044) Burkholderia ambifaria MC40-6 6176889 YP_001808497.1 CDS BamMC406_1796 NC_010551.1 2002324 2003499 R KEGG: bam:Bamb_1824 ATPase-like protein; ATPase-like protein complement(2002324..2003499) Burkholderia ambifaria MC40-6 6176848 YP_001808498.1 CDS BamMC406_1797 NC_010551.1 2003523 2004695 R PFAM: MscS Mechanosensitive ion channel; KEGG: bam:Bamb_1825 MscS mechanosensitive ion channel; MscS mechanosensitive ion channel complement(2003523..2004695) Burkholderia ambifaria MC40-6 6176858 YP_001808499.1 CDS BamMC406_1798 NC_010551.1 2004790 2005146 R KEGG: bam:Bamb_1826 hypothetical protein; hypothetical protein complement(2004790..2005146) Burkholderia ambifaria MC40-6 6177122 YP_001808500.1 CDS BamMC406_1799 NC_010551.1 2005266 2005976 R PFAM: Ankyrin; KEGG: bam:Bamb_1827 ankyrin; ankyrin complement(2005266..2005976) Burkholderia ambifaria MC40-6 6176901 YP_001808501.1 CDS BamMC406_1800 NC_010551.1 2006017 2006799 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: bam:Bamb_1828 hydrolase, TatD family; TatD family hydrolase complement(2006017..2006799) Burkholderia ambifaria MC40-6 6177250 YP_001808502.1 CDS BamMC406_1801 NC_010551.1 2006879 2007907 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(2006879..2007907) Burkholderia ambifaria MC40-6 6177440 YP_001808503.1 CDS tmk NC_010551.1 2007926 2008546 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(2007926..2008546) Burkholderia ambifaria MC40-6 6176969 YP_001808504.1 CDS BamMC406_1803 NC_010551.1 2008546 2009565 R PFAM: aminodeoxychorismate lyase; KEGG: bam:Bamb_1831 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(2008546..2009565) Burkholderia ambifaria MC40-6 6176648 YP_001808505.1 CDS BamMC406_1804 NC_010551.1 2009643 2010677 D KEGG: bam:Bamb_1832 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 2009643..2010677 Burkholderia ambifaria MC40-6 6176562 YP_001808506.1 CDS BamMC406_1805 NC_010551.1 2010754 2011599 D PFAM: protein of unknown function DUF833; KEGG: bam:Bamb_1833 protein of unknown function DUF833; hypothetical protein 2010754..2011599 Burkholderia ambifaria MC40-6 6176657 YP_001808507.1 CDS BamMC406_1806 NC_010551.1 2011645 2012085 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_1834 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2011645..2012085) Burkholderia ambifaria MC40-6 6176772 YP_001808508.1 CDS BamMC406_1807 NC_010551.1 2012120 2013079 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bam:Bamb_1835 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(2012120..2013079) Burkholderia ambifaria MC40-6 6176111 YP_001808509.1 CDS BamMC406_1808 NC_010551.1 2013141 2014139 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bmu:Bmul_1375 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase complement(2013141..2014139) Burkholderia ambifaria MC40-6 6176679 YP_001808510.1 CDS BamMC406_1809 NC_010551.1 2014248 2014727 R PFAM: thioesterase superfamily protein; KEGG: bvi:Bcep1808_1824 thioesterase superfamily protein; thioesterase superfamily protein complement(2014248..2014727) Burkholderia ambifaria MC40-6 6176714 YP_001808511.1 CDS BamMC406_1810 NC_010551.1 2014724 2015038 R PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: bam:Bamb_1838 stress responsive alpha-beta barrel domain protein; stress responsive alpha-beta barrel domain-containing protein complement(2014724..2015038) Burkholderia ambifaria MC40-6 6176632 YP_001808512.1 CDS BamMC406_1811 NC_010551.1 2015217 2015594 D KEGG: bam:Bamb_1839 phage integrase family protein; hypothetical protein 2015217..2015594 Burkholderia ambifaria MC40-6 6176489 YP_001808513.1 CDS BamMC406_1812 NC_010551.1 2015542 2016792 D PFAM: transposase mutator type; KEGG: bch:Bcen2424_3752 transposase, mutator type; transposase mutator type 2015542..2016792 Burkholderia ambifaria MC40-6 6176614 YP_001808514.1 CDS BamMC406_1813 NC_010551.1 2016944 2017801 D PFAM: integrase family protein; KEGG: bam:Bamb_1839 phage integrase family protein; integrase family protein 2016944..2017801 Burkholderia ambifaria MC40-6 6177283 YP_001808515.1 CDS BamMC406_1814 NC_010551.1 2017979 2018806 R PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: eca:ECA2935 hypothetical protein; coenzyme F420-dependent NADP oxidoreductase complement(2017979..2018806) Burkholderia ambifaria MC40-6 6177420 YP_001808516.1 CDS BamMC406_1815 NC_010551.1 2018852 2019229 D PFAM: helix-turn-helix HxlR type; KEGG: eca:ECA2934 putative transcriptional regulator; HxlR family transcriptional regulator 2018852..2019229 Burkholderia ambifaria MC40-6 6177392 YP_001808517.1 CDS BamMC406_1818 NC_010551.1 2020518 2021228 D KEGG: bte:BTH_I1924 hypothetical protein; hypothetical protein 2020518..2021228 Burkholderia ambifaria MC40-6 6177402 YP_001808518.1 CDS BamMC406_1819 NC_010551.1 2021334 2021864 R PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_1889 isochorismatase hydrolase; isochorismatase hydrolase complement(2021334..2021864) Burkholderia ambifaria MC40-6 6176811 YP_001808519.1 CDS BamMC406_1820 NC_010551.1 2022555 2024696 D KEGG: bam:Bamb_1890 putative lipoprotein; putative lipoprotein 2022555..2024696 Burkholderia ambifaria MC40-6 6176628 YP_001808520.1 CDS BamMC406_1821 NC_010551.1 2024842 2026242 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bam:Bamb_1891 diguanylate cyclase; diguanylate cyclase complement(2024842..2026242) Burkholderia ambifaria MC40-6 6176391 YP_001808521.1 CDS BamMC406_1822 NC_010551.1 2026536 2027714 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2026536..2027714) Burkholderia ambifaria MC40-6 6177076 YP_001808522.1 CDS BamMC406_1823 NC_010551.1 2028046 2028678 R PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_1893 nicotinamidase; nicotinamidase complement(2028046..2028678) Burkholderia ambifaria MC40-6 6179028 YP_001808523.1 CDS BamMC406_1824 NC_010551.1 2028723 2030807 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bam:Bamb_1894 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase complement(2028723..2030807) Burkholderia ambifaria MC40-6 6176696 YP_001808524.1 CDS BamMC406_1825 NC_010551.1 2031001 2032755 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2031001..2032755) Burkholderia ambifaria MC40-6 6176518 YP_001808525.1 CDS BamMC406_1826 NC_010551.1 2032808 2034376 D PFAM: protein of unknown function UPF0061; KEGG: bam:Bamb_1896 hypothetical protein; hypothetical protein 2032808..2034376 Burkholderia ambifaria MC40-6 6176589 YP_001808526.1 CDS BamMC406_1827 NC_010551.1 2034415 2034846 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: bam:Bamb_1897 methionine-R-sulfoxide reductase; methionine-R-sulfoxide reductase 2034415..2034846 Burkholderia ambifaria MC40-6 6177433 YP_001808527.1 CDS BamMC406_1828 NC_010551.1 2034971 2035501 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2034971..2035501 Burkholderia ambifaria MC40-6 6176809 YP_001808528.1 CDS BamMC406_1829 NC_010551.1 2035503 2035811 D PFAM: BolA family protein; KEGG: bam:Bamb_1899 BolA family protein; BolA family protein 2035503..2035811 Burkholderia ambifaria MC40-6 6176776 YP_001808529.1 CDS BamMC406_1830 NC_010551.1 2035830 2036612 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bam:Bamb_1900 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2035830..2036612 Burkholderia ambifaria MC40-6 6177391 YP_001808530.1 CDS BamMC406_1831 NC_010551.1 2036846 2037388 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_1901 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2036846..2037388) Burkholderia ambifaria MC40-6 6176590 YP_001808531.1 CDS BamMC406_1832 NC_010551.1 2037388 2041461 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2037388..2041461) Burkholderia ambifaria MC40-6 6176385 YP_001808532.1 CDS BamMC406_1833 NC_010551.1 2041815 2043119 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_1903 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 2041815..2043119 Burkholderia ambifaria MC40-6 6176970 YP_001808533.1 CDS BamMC406_1834 NC_010551.1 2043173 2044717 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: bam:Bamb_1904 carbohydrate kinase, YjeF related protein; carbohydrate kinase 2043173..2044717 Burkholderia ambifaria MC40-6 6176609 YP_001808534.1 CDS pgi NC_010551.1 2044829 2046451 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2044829..2046451 Burkholderia ambifaria MC40-6 6179084 YP_001808535.1 CDS BamMC406_1836 NC_010551.1 2046527 2047228 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1906 ABC transporter related; ABC transporter-like protein complement(2046527..2047228) Burkholderia ambifaria MC40-6 6176639 YP_001808536.1 CDS BamMC406_1837 NC_010551.1 2047299 2047904 D PFAM: lipolytic protein G-D-S-L family; KEGG: bam:Bamb_1907 arylesterase; lysophospholipase 2047299..2047904 Burkholderia ambifaria MC40-6 6176753 YP_001808537.1 CDS BamMC406_1838 NC_010551.1 2047996 2049930 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bam:Bamb_1908 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2047996..2049930) Burkholderia ambifaria MC40-6 6176659 YP_001808538.1 CDS BamMC406_1839 NC_010551.1 2050690 2053113 R KEGG: bam:Bamb_1909 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(2050690..2053113) Burkholderia ambifaria MC40-6 6177235 YP_001808539.1 CDS clpX NC_010551.1 2053311 2054582 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2053311..2054582) Burkholderia ambifaria MC40-6 6176542 YP_001808540.1 CDS clpP NC_010551.1 2054748 2055401 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(2054748..2055401) Burkholderia ambifaria MC40-6 6177109 YP_001808541.1 CDS tig NC_010551.1 2055542 2056888 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2055542..2056888) Burkholderia ambifaria MC40-6 6176379 YP_001808542.1 CDS BamMC406_1843 NC_010551.1 2057264 2058409 D PFAM: glycerate kinase; KEGG: bam:Bamb_1913 glycerate kinase; glycerate kinase 2057264..2058409 Burkholderia ambifaria MC40-6 6176742 YP_001808543.1 CDS BamMC406_1844 NC_010551.1 2058472 2058921 D PFAM: regulatory protein MarR; KEGG: bam:Bamb_1914 transcriptional regulator, MarR family; MarR family transcriptional regulator 2058472..2058921 Burkholderia ambifaria MC40-6 6179062 YP_001808544.1 CDS BamMC406_1845 NC_010551.1 2059202 2060200 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2059202..2060200) Burkholderia ambifaria MC40-6 6176600 YP_001808545.1 CDS BamMC406_1847 NC_010551.1 2060887 2061117 D KEGG: bam:Bamb_1920 hypothetical protein; hypothetical protein 2060887..2061117 Burkholderia ambifaria MC40-6 6176856 YP_001808546.1 CDS BamMC406_1848 NC_010551.1 2061219 2061512 R KEGG: bam:Bamb_1921 hypothetical protein; hypothetical protein complement(2061219..2061512) Burkholderia ambifaria MC40-6 6176570 YP_001808547.1 CDS BamMC406_1849 NC_010551.1 2062035 2062868 D TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bam:Bamb_1922 squalene/phytoene synthase; squalene synthase 2062035..2062868 Burkholderia ambifaria MC40-6 6176717 YP_001808548.1 CDS BamMC406_1850 NC_010551.1 2062894 2064105 R PFAM: protein of unknown function DUF1501; KEGG: bam:Bamb_1923 protein of unknown function DUF1501; hypothetical protein complement(2062894..2064105) Burkholderia ambifaria MC40-6 6179107 YP_001808549.1 CDS BamMC406_1851 NC_010551.1 2064173 2065690 R PFAM: Protein of unknown function DUF1800; KEGG: bam:Bamb_1924 hypothetical protein; hypothetical protein complement(2064173..2065690) Burkholderia ambifaria MC40-6 6176087 YP_001808550.1 CDS BamMC406_1852 NC_010551.1 2065811 2066089 R KEGG: bam:Bamb_1925 hypothetical protein; hypothetical protein complement(2065811..2066089) Burkholderia ambifaria MC40-6 6177117 YP_001808551.1 CDS ompR NC_010551.1 2066348 2067082 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 2066348..2067082 Burkholderia ambifaria MC40-6 6179020 YP_001808552.1 CDS BamMC406_1854 NC_010551.1 2067123 2068484 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_1927 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2067123..2068484 Burkholderia ambifaria MC40-6 6176933 YP_001808553.1 CDS BamMC406_1855 NC_010551.1 2068673 2069221 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_1928 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2068673..2069221 Burkholderia ambifaria MC40-6 6176997 YP_001808554.1 CDS BamMC406_1856 NC_010551.1 2069298 2069825 D PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_1929 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2069298..2069825 Burkholderia ambifaria MC40-6 6176863 YP_001808555.1 CDS ispF NC_010551.1 2069985 2070470 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2069985..2070470) Burkholderia ambifaria MC40-6 6176615 YP_001808556.1 CDS ispD NC_010551.1 2070500 2071147 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2070500..2071147) Burkholderia ambifaria MC40-6 6176616 YP_001808557.1 CDS BamMC406_1859 NC_010551.1 2071318 2074788 D KEGG: bam:Bamb_1932 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 2071318..2074788 Burkholderia ambifaria MC40-6 6176625 YP_001808558.1 CDS BamMC406_1860 NC_010551.1 2074885 2076105 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2074885..2076105 Burkholderia ambifaria MC40-6 6178156 YP_001808559.1 CDS BamMC406_1861 NC_010551.1 2076168 2077187 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bam:Bamb_1934 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 2076168..2077187 Burkholderia ambifaria MC40-6 6178242 YP_001808560.1 CDS BamMC406_1862 NC_010551.1 2077416 2079935 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bam:Bamb_1935 penicillin-binding protein, 1A family; 1A family penicillin-binding protein complement(2077416..2079935) Burkholderia ambifaria MC40-6 6177996 YP_001808561.1 CDS BamMC406_1863 NC_010551.1 2080374 2081054 D PFAM: PspA/IM30 family protein; KEGG: bam:Bamb_1936 phage shock protein A, PspA; phage shock protein A, PspA 2080374..2081054 Burkholderia ambifaria MC40-6 6176640 YP_001808562.1 CDS BamMC406_1864 NC_010551.1 2081133 2082323 D KEGG: bam:Bamb_1937 TPR repeat protein; hypothetical protein 2081133..2082323 Burkholderia ambifaria MC40-6 6176647 YP_001808563.1 CDS mscL NC_010551.1 2082573 2083004 D homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 2082573..2083004 Burkholderia ambifaria MC40-6 6176651 YP_001808564.1 CDS BamMC406_1866 NC_010551.1 2083299 2083790 D KEGG: bur:Bcep18194_A5263 hypothetical protein; hypothetical protein 2083299..2083790 Burkholderia ambifaria MC40-6 6178145 YP_001808565.1 CDS BamMC406_1867 NC_010551.1 2083868 2084731 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bam:Bamb_1940 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase complement(2083868..2084731) Burkholderia ambifaria MC40-6 6178069 YP_001808566.1 CDS BamMC406_1868 NC_010551.1 2084903 2085112 D PFAM: protein of unknown function DUF1458; KEGG: bam:Bamb_1941 protein of unknown function DUF1458; hypothetical protein 2084903..2085112 Burkholderia ambifaria MC40-6 6178191 YP_001808567.1 CDS BamMC406_1869 NC_010551.1 2085328 2086257 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1942 transcriptional regulator, LysR family; LysR family transcriptional regulator 2085328..2086257 Burkholderia ambifaria MC40-6 6176676 YP_001808568.1 CDS BamMC406_1870 NC_010551.1 2086364 2087776 R catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase complement(2086364..2087776) Burkholderia ambifaria MC40-6 6178204 YP_001808569.1 CDS BamMC406_1871 NC_010551.1 2087773 2088102 R KEGG: bam:Bamb_1944 hypothetical protein; hypothetical protein complement(2087773..2088102) Burkholderia ambifaria MC40-6 6178064 YP_001808570.1 CDS BamMC406_1872 NC_010551.1 2088287 2088640 D TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: bam:Bamb_1945 transthyretin; hydroxyisourate hydrolase 2088287..2088640 Burkholderia ambifaria MC40-6 6176695 YP_001808571.1 CDS BamMC406_1873 NC_010551.1 2088723 2089916 D PFAM: protein of unknown function DUF989; KEGG: bam:Bamb_1946 protein of unknown function DUF989; hypothetical protein 2088723..2089916 Burkholderia ambifaria MC40-6 6178268 YP_001808572.1 CDS BamMC406_1874 NC_010551.1 2090013 2090423 R KEGG: bam:Bamb_1947 hypothetical protein; hypothetical protein complement(2090013..2090423) Burkholderia ambifaria MC40-6 6178343 YP_001808573.1 CDS BamMC406_1875 NC_010551.1 2090555 2091067 R catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase complement(2090555..2091067) Burkholderia ambifaria MC40-6 6176705 YP_001808574.1 CDS BamMC406_1876 NC_010551.1 2091064 2092077 R catalyzes the formation of S-ureidoglycolate and urea from allantoate; allantoicase complement(2091064..2092077) Burkholderia ambifaria MC40-6 6176711 YP_001808575.1 CDS BamMC406_1877 NC_010551.1 2092142 2092663 R KEGG: bam:Bamb_1950 hypothetical protein; hypothetical protein complement(2092142..2092663) Burkholderia ambifaria MC40-6 6176719 YP_001808576.1 CDS BamMC406_1878 NC_010551.1 2092660 2093658 R KEGG: bam:Bamb_1951 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein complement(2092660..2093658) Burkholderia ambifaria MC40-6 6178405 YP_001808577.1 CDS BamMC406_1879 NC_010551.1 2093764 2094600 R PFAM: Asp/Glu/hydantoin racemase; KEGG: bam:Bamb_1952 Asp/Glu racemase; Asp/Glu/hydantoin racemase complement(2093764..2094600) Burkholderia ambifaria MC40-6 6178344 YP_001808578.1 CDS BamMC406_1880 NC_010551.1 2094611 2096095 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bam:Bamb_1953 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease complement(2094611..2096095) Burkholderia ambifaria MC40-6 6177938 YP_001808579.1 CDS BamMC406_1881 NC_010551.1 2096245 2096949 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_1954 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2096245..2096949) Burkholderia ambifaria MC40-6 6178515 YP_001808580.1 CDS ldcA NC_010551.1 2097258 2098196 R catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A complement(2097258..2098196) Burkholderia ambifaria MC40-6 6178399 YP_001808581.1 CDS BamMC406_1883 NC_010551.1 2098310 2098789 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bam:Bamb_1956 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase complement(2098310..2098789) Burkholderia ambifaria MC40-6 6178305 YP_001808582.1 CDS BamMC406_1884 NC_010551.1 2098888 2099289 R KEGG: bam:Bamb_1957 hypothetical protein; hypothetical protein complement(2098888..2099289) Burkholderia ambifaria MC40-6 6178238 YP_001808583.1 CDS BamMC406_1885 NC_010551.1 2099575 2100792 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_1958 major facilitator superfamily MFS_1; major facilitator transporter complement(2099575..2100792) Burkholderia ambifaria MC40-6 6178495 YP_001808584.1 CDS BamMC406_1886 NC_010551.1 2101106 2101876 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bam:Bamb_1959 transcriptional regulator, GntR family; GntR family transcriptional regulator 2101106..2101876 Burkholderia ambifaria MC40-6 6178475 YP_001808585.1 CDS BamMC406_1887 NC_010551.1 2101873 2103612 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_1960 hypothetical protein; putative oxidoreductase 2101873..2103612 Burkholderia ambifaria MC40-6 6176815 YP_001808586.1 CDS BamMC406_1888 NC_010551.1 2103624 2103869 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bam:Bamb_1961 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2103624..2103869 Burkholderia ambifaria MC40-6 6176826 YP_001808587.1 CDS BamMC406_1889 NC_010551.1 2104009 2105004 D PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: bam:Bamb_1962 PBS lyase heat domain protein repeat-containing protein; HEAT repeat-containing PBS lyase 2104009..2105004 Burkholderia ambifaria MC40-6 6176827 YP_001808588.1 CDS BamMC406_1890 NC_010551.1 2105001 2105321 D KEGG: bam:Bamb_1963 hypothetical protein; hypothetical protein 2105001..2105321 Burkholderia ambifaria MC40-6 6178635 YP_001808589.1 CDS guaA NC_010551.1 2105431 2107050 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2105431..2107050) Burkholderia ambifaria MC40-6 6176836 YP_001808590.1 CDS BamMC406_1892 NC_010551.1 2107158 2107757 R KEGG: bam:Bamb_2023 hypothetical protein; hypothetical protein complement(2107158..2107757) Burkholderia ambifaria MC40-6 6178692 YP_001808591.1 CDS BamMC406_1893 NC_010551.1 2107764 2109224 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2107764..2109224) Burkholderia ambifaria MC40-6 6178528 YP_001808592.1 CDS BamMC406_1894 NC_010551.1 2109490 2110311 R KEGG: bam:Bamb_2025 metal-binding integral membrane protein-like protein; metal-binding integral membrane protein-like protein complement(2109490..2110311) Burkholderia ambifaria MC40-6 6178669 YP_001808593.1 CDS BamMC406_1895 NC_010551.1 2110342 2111106 R PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: bam:Bamb_2026 protein of unknown function DUF899, thioredoxin family protein; hypothetical protein complement(2110342..2111106) Burkholderia ambifaria MC40-6 6178678 YP_001808594.1 CDS BamMC406_1896 NC_010551.1 2111220 2112440 D KEGG: bam:Bamb_2027 hypothetical protein; hypothetical protein 2111220..2112440 Burkholderia ambifaria MC40-6 6178075 YP_001808595.1 CDS BamMC406_1897 NC_010551.1 2112471 2113154 D KEGG: bam:Bamb_2028 hypothetical protein; hypothetical protein 2112471..2113154 Burkholderia ambifaria MC40-6 6176866 YP_001808596.1 CDS BamMC406_1898 NC_010551.1 2113323 2114297 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_2029 protein of unknown function DUF6, transmembrane; hypothetical protein 2113323..2114297 Burkholderia ambifaria MC40-6 6176875 YP_001808597.1 CDS BamMC406_1899 NC_010551.1 2114361 2114684 R PFAM: protein of unknown function UPF0125; KEGG: bam:Bamb_2030 protein of unknown function UPF0125; hypothetical protein complement(2114361..2114684) Burkholderia ambifaria MC40-6 6178718 YP_001808598.1 CDS BamMC406_1900 NC_010551.1 2114689 2115078 R PFAM: cyclase/dehydrase; KEGG: bam:Bamb_2031 cyclase/dehydrase; cyclase/dehydrase complement(2114689..2115078) Burkholderia ambifaria MC40-6 6176886 YP_001808599.1 CDS smpB NC_010551.1 2115226 2115672 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2115226..2115672 Burkholderia ambifaria MC40-6 6176904 YP_001808600.1 CDS BamMC406_1902 NC_010551.1 2115895 2116830 R PFAM: band 7 protein; KEGG: bam:Bamb_2033 band 7 protein; hypothetical protein complement(2115895..2116830) Burkholderia ambifaria MC40-6 6178731 YP_001808601.1 CDS BamMC406_1903 NC_010551.1 2116864 2117298 R PFAM: protein of unknown function DUF107; KEGG: bam:Bamb_2034 protein of unknown function DUF107; hypothetical protein complement(2116864..2117298) Burkholderia ambifaria MC40-6 6178741 YP_001808602.1 CDS BamMC406_1904 NC_010551.1 2117464 2119863 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(2117464..2119863) Burkholderia ambifaria MC40-6 6176932 YP_001808603.1 CDS BamMC406_1905 NC_010551.1 2120240 2121055 D PFAM: protein of unknown function DUF299; KEGG: bam:Bamb_2036 hypothetical protein; hypothetical protein 2120240..2121055 Burkholderia ambifaria MC40-6 6178654 YP_001808604.1 CDS BamMC406_1906 NC_010551.1 2121172 2121954 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bam:Bamb_2037 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(2121172..2121954) Burkholderia ambifaria MC40-6 6176953 YP_001808605.1 CDS rnhB NC_010551.1 2122252 2122905 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(2122252..2122905) Burkholderia ambifaria MC40-6 6178833 YP_001808606.1 CDS lpxB NC_010551.1 2122902 2124071 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(2122902..2124071) Burkholderia ambifaria MC40-6 6176966 YP_001808607.1 CDS BamMC406_1909 NC_010551.1 2124075 2124863 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2124075..2124863) Burkholderia ambifaria MC40-6 6176883 YP_001808608.1 CDS fabZ NC_010551.1 2124931 2125398 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2124931..2125398) Burkholderia ambifaria MC40-6 6176985 YP_001808609.1 CDS lpxD NC_010551.1 2125529 2126638 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(2125529..2126638) Burkholderia ambifaria MC40-6 6176992 YP_001808610.1 CDS BamMC406_1912 NC_010551.1 2126655 2127182 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: bam:Bamb_2043 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(2126655..2127182) Burkholderia ambifaria MC40-6 6178776 YP_001808611.1 CDS BamMC406_1913 NC_010551.1 2127217 2129523 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: bam:Bamb_2044 surface antigen (D15); outer membrane protein assembly complex, YaeT protein complement(2127217..2129523) Burkholderia ambifaria MC40-6 6178932 YP_001808612.1 CDS BamMC406_1914 NC_010551.1 2129588 2130976 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: bam:Bamb_2045 putative membrane-associated zinc metalloprotease; membrane-associated zinc metalloprotease complement(2129588..2130976) Burkholderia ambifaria MC40-6 6177013 YP_001808613.1 CDS BamMC406_1915 NC_010551.1 2130988 2132184 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2130988..2132184) Burkholderia ambifaria MC40-6 6176487 YP_001808614.1 CDS BamMC406_1916 NC_010551.1 2132200 2133021 R PFAM: phosphatidate cytidylyltransferase; KEGG: bam:Bamb_2047 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(2132200..2133021) Burkholderia ambifaria MC40-6 6177035 YP_001808615.1 CDS BamMC406_1917 NC_010551.1 2133015 2133797 R KEGG: bam:Bamb_2048 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(2133015..2133797) Burkholderia ambifaria MC40-6 6177063 YP_001808616.1 CDS frr NC_010551.1 2133847 2134407 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2133847..2134407) Burkholderia ambifaria MC40-6 6177046 YP_001808617.1 CDS pyrH NC_010551.1 2134509 2135222 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2134509..2135222) Burkholderia ambifaria MC40-6 6177089 YP_001808618.1 CDS tsf NC_010551.1 2135379 2136260 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2135379..2136260) Burkholderia ambifaria MC40-6 6179022 YP_001808619.1 CDS rpsB NC_010551.1 2136423 2137163 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2136423..2137163) Burkholderia ambifaria MC40-6 6177151 YP_001808620.1 CDS BamMC406_1922 NC_010551.1 2137544 2138359 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 2137544..2138359 Burkholderia ambifaria MC40-6 6177040 YP_001808621.1 CDS BamMC406_1923 NC_010551.1 2138409 2140985 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 2138409..2140985 Burkholderia ambifaria MC40-6 6177328 YP_001808622.1 CDS BamMC406_1924 NC_010551.1 2141002 2142942 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bam:Bamb_2055 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein 2141002..2142942 Burkholderia ambifaria MC40-6 6177163 YP_001808623.1 CDS BamMC406_1925 NC_010551.1 2143053 2143586 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2143053..2143586) Burkholderia ambifaria MC40-6 6177425 YP_001808624.1 CDS BamMC406_1926 NC_010551.1 2143583 2145658 R KEGG: bam:Bamb_2057 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(2143583..2145658) Burkholderia ambifaria MC40-6 6179100 YP_001808625.1 CDS BamMC406_1927 NC_010551.1 2145830 2147119 R SMART: ZipA FtsZ-binding region; KEGG: bam:Bamb_2058 hypothetical protein; ZipA FtsZ-binding region complement(2145830..2147119) Burkholderia ambifaria MC40-6 6177400 YP_001808626.1 CDS BamMC406_1928 NC_010551.1 2147205 2150717 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: bvi:Bcep1808_1933 chromosome segregation protein SMC; chromosome segregation protein SMC complement(2147205..2150717) Burkholderia ambifaria MC40-6 6177394 YP_001808627.1 CDS BamMC406_1929 NC_010551.1 2150857 2151798 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_2060 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2150857..2151798) Burkholderia ambifaria MC40-6 6177370 YP_001808628.1 CDS BamMC406_1930 NC_010551.1 2151975 2153237 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 2151975..2153237 Burkholderia ambifaria MC40-6 6177359 YP_001808629.1 CDS dapD NC_010551.1 2153283 2154110 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 2153283..2154110 Burkholderia ambifaria MC40-6 6177343 YP_001808630.1 CDS BamMC406_1932 NC_010551.1 2154110 2154478 D PFAM: arsenate reductase and related; KEGG: bam:Bamb_2063 hypothetical protein; arsenate reductase-like protein 2154110..2154478 Burkholderia ambifaria MC40-6 6177338 YP_001808631.1 CDS BamMC406_1933 NC_010551.1 2154580 2155719 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2154580..2155719 Burkholderia ambifaria MC40-6 6177327 YP_001808632.1 CDS BamMC406_1934 NC_010551.1 2155731 2156639 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2155731..2156639 Burkholderia ambifaria MC40-6 6177313 YP_001808633.1 CDS cls NC_010551.1 2156754 2158193 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2156754..2158193 Burkholderia ambifaria MC40-6 6177297 YP_001808634.1 CDS BamMC406_1936 NC_010551.1 2158323 2158802 R PFAM: glutathione peroxidase; KEGG: bam:Bamb_2067 glutathione peroxidase; glutathione peroxidase complement(2158323..2158802) Burkholderia ambifaria MC40-6 6179093 YP_001808635.1 CDS BamMC406_1937 NC_010551.1 2158984 2160870 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2068 ABC transporter related; ABC transporter-like protein 2158984..2160870 Burkholderia ambifaria MC40-6 6179091 YP_001808636.1 CDS BamMC406_1938 NC_010551.1 2161050 2161316 R KEGG: bam:Bamb_2069 hypothetical protein; hypothetical protein complement(2161050..2161316) Burkholderia ambifaria MC40-6 6178984 YP_001808637.1 CDS BamMC406_1939 NC_010551.1 2161465 2162841 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(2161465..2162841) Burkholderia ambifaria MC40-6 6178219 YP_001808638.1 CDS alr NC_010551.1 2162853 2163923 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(2162853..2163923) Burkholderia ambifaria MC40-6 6178248 YP_001808639.1 CDS BamMC406_1941 NC_010551.1 2164142 2165449 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2072 hypothetical protein; lysophospholipid transporter LplT 2164142..2165449 Burkholderia ambifaria MC40-6 6178282 YP_001808640.1 CDS BamMC406_1942 NC_010551.1 2165508 2166317 D KEGG: bam:Bamb_2073 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 2165508..2166317 Burkholderia ambifaria MC40-6 6178158 YP_001808641.1 CDS BamMC406_1943 NC_010551.1 2166336 2167295 R PFAM: Domain of unknown function DUF1853; KEGG: bam:Bamb_2074 hypothetical protein; hypothetical protein complement(2166336..2167295) Burkholderia ambifaria MC40-6 6178185 YP_001808642.1 CDS BamMC406_1944 NC_010551.1 2167292 2168329 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bam:Bamb_2075 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(2167292..2168329) Burkholderia ambifaria MC40-6 6178244 YP_001808643.1 CDS BamMC406_1945 NC_010551.1 2168316 2168816 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_2076 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(2168316..2168816) Burkholderia ambifaria MC40-6 6178276 YP_001808644.1 CDS BamMC406_1946 NC_010551.1 2168813 2169580 R PFAM: peptidase M22 glycoprotease; KEGG: bam:Bamb_2077 peptidase M22, glycoprotease; peptidase M22 glycoprotease complement(2168813..2169580) Burkholderia ambifaria MC40-6 6178328 YP_001808645.1 CDS BamMC406_1947 NC_010551.1 2169728 2169997 D PFAM: acyl-coA-binding protein ACBP; KEGG: bam:Bamb_2078 acyl-coA-binding protein, ACBP; acyl-CoA-binding protein 2169728..2169997 Burkholderia ambifaria MC40-6 6178222 YP_001808646.1 CDS BamMC406_1948 NC_010551.1 2170359 2171897 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bam:Bamb_2079 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2170359..2171897 Burkholderia ambifaria MC40-6 6178309 YP_001808647.1 CDS BamMC406_1949 NC_010551.1 2172077 2172232 R hypothetical protein complement(2172077..2172232) Burkholderia ambifaria MC40-6 6178316 YP_001808648.1 CDS BamMC406_1950 NC_010551.1 2172286 2173593 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: bam:Bamb_2080 isocitrate lyase; isocitrate lyase 2172286..2173593 Burkholderia ambifaria MC40-6 6178347 YP_001808649.1 CDS BamMC406_1951 NC_010551.1 2173816 2174250 R PFAM: UspA domain protein; KEGG: bam:Bamb_2081 UspA domain protein; UspA domain-containing protein complement(2173816..2174250) Burkholderia ambifaria MC40-6 6178275 YP_001808650.1 CDS BamMC406_1952 NC_010551.1 2174410 2175315 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2082 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2174410..2175315) Burkholderia ambifaria MC40-6 6178289 YP_001808651.1 CDS BamMC406_1953 NC_010551.1 2175470 2176231 D KEGG: bam:Bamb_2083 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 2175470..2176231 Burkholderia ambifaria MC40-6 6178383 YP_001808652.1 CDS BamMC406_1954 NC_010551.1 2176299 2177891 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 2176299..2177891 Burkholderia ambifaria MC40-6 6178345 YP_001808653.1 CDS BamMC406_1956 NC_010551.1 2178697 2179578 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bam:Bamb_2086 transcriptional regulator, AraC family; AraC family transcriptional regulator 2178697..2179578 Burkholderia ambifaria MC40-6 6178314 YP_001808654.1 CDS BamMC406_1957 NC_010551.1 2179606 2180070 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_2087 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2179606..2180070) Burkholderia ambifaria MC40-6 6178425 YP_001808655.1 CDS gltX NC_010551.1 2181547 2182956 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2181547..2182956) Burkholderia ambifaria MC40-6 6178543 YP_001808656.1 CDS BamMC406_1959 NC_010551.1 2183237 2184145 D PFAM: Patatin; KEGG: bam:Bamb_2089 patatin; patatin 2183237..2184145 Burkholderia ambifaria MC40-6 6178559 YP_001808657.1 CDS BamMC406_1960 NC_010551.1 2184276 2184947 R PFAM: NLP/P60 protein; KEGG: bam:Bamb_2090 NLP/P60 protein; NLP/P60 protein complement(2184276..2184947) Burkholderia ambifaria MC40-6 6178561 YP_001808658.1 CDS BamMC406_1961 NC_010551.1 2185076 2186698 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_2091 ABC transporter related; ABC transporter-like protein complement(2185076..2186698) Burkholderia ambifaria MC40-6 6178459 YP_001808659.1 CDS BamMC406_1962 NC_010551.1 2186695 2187792 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2092 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2186695..2187792) Burkholderia ambifaria MC40-6 6178378 YP_001808660.1 CDS BamMC406_1963 NC_010551.1 2187841 2188884 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2093 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2187841..2188884) Burkholderia ambifaria MC40-6 6178385 YP_001808661.1 CDS BamMC406_1964 NC_010551.1 2188937 2190820 R PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_2094 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(2188937..2190820) Burkholderia ambifaria MC40-6 6178473 YP_001808662.1 CDS BamMC406_1965 NC_010551.1 2191033 2191392 R KEGG: bvi:Bcep1808_1969 hypothetical protein; hypothetical protein complement(2191033..2191392) Burkholderia ambifaria MC40-6 6178476 YP_001808663.1 CDS BamMC406_1966 NC_010551.1 2191739 2194957 D PFAM: acriflavin resistance protein; KEGG: bam:Bamb_2096 acriflavin resistance protein; acriflavin resistance protein 2191739..2194957 Burkholderia ambifaria MC40-6 6178560 YP_001808664.1 CDS BamMC406_1967 NC_010551.1 2194947 2196122 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_2097 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2194947..2196122 Burkholderia ambifaria MC40-6 6178603 YP_001808665.1 CDS BamMC406_1968 NC_010551.1 2196115 2197530 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_2098 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 2196115..2197530 Burkholderia ambifaria MC40-6 6178088 YP_001808666.1 CDS BamMC406_1969 NC_010551.1 2197641 2197898 D KEGG: bam:Bamb_2099 hypothetical protein; hypothetical protein 2197641..2197898 Burkholderia ambifaria MC40-6 6178609 YP_001808667.1 CDS BamMC406_1970 NC_010551.1 2197977 2198642 R PFAM: transcriptional regulator domain protein; KEGG: bam:Bamb_2100 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2197977..2198642) Burkholderia ambifaria MC40-6 6178556 YP_001808668.1 CDS BamMC406_1971 NC_010551.1 2198662 2200053 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_2101 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2198662..2200053) Burkholderia ambifaria MC40-6 6178487 YP_001808669.1 CDS BamMC406_1972 NC_010551.1 2200065 2200739 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_2102 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2200065..2200739) Burkholderia ambifaria MC40-6 6178633 YP_001808670.1 CDS BamMC406_1973 NC_010551.1 2200956 2201258 D KEGG: bam:Bamb_2103 hypothetical protein; hypothetical protein 2200956..2201258 Burkholderia ambifaria MC40-6 6178617 YP_001808671.1 CDS BamMC406_1974 NC_010551.1 2201359 2201691 R TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: bam:Bamb_2104 cytochrome c oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV complement(2201359..2201691) Burkholderia ambifaria MC40-6 6178655 YP_001808672.1 CDS BamMC406_1975 NC_010551.1 2201692 2202300 R TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: bam:Bamb_2105 cytochrome c oxidase, subunit III; cytochrome o ubiquinol oxidase subunit III complement(2201692..2202300) Burkholderia ambifaria MC40-6 6178653 YP_001808673.1 CDS BamMC406_1976 NC_010551.1 2202300 2204306 R KEGG: bam:Bamb_2106 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I complement(2202300..2204306) Burkholderia ambifaria MC40-6 6178611 YP_001808674.1 CDS BamMC406_1977 NC_010551.1 2204310 2205161 R TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: bam:Bamb_2107 ubiquinol oxidase, subunit II; ubiquinol oxidase subunit II complement(2204310..2205161) Burkholderia ambifaria MC40-6 6178553 YP_001808675.1 CDS BamMC406_1978 NC_010551.1 2205485 2207014 R KEGG: bam:Bamb_2108 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(2205485..2207014) Burkholderia ambifaria MC40-6 6178564 YP_001808676.1 CDS BamMC406_1979 NC_010551.1 2207800 2209053 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(2207800..2209053) Burkholderia ambifaria MC40-6 6178693 YP_001808677.1 CDS BamMC406_1980 NC_010551.1 2209396 2210802 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: bam:Bamb_2110 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase complement(2209396..2210802) Burkholderia ambifaria MC40-6 6178676 YP_001808678.1 CDS BamMC406_1981 NC_010551.1 2210846 2211817 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(2210846..2211817) Burkholderia ambifaria MC40-6 6178710 YP_001808679.1 CDS BamMC406_1982 NC_010551.1 2211917 2212780 R PFAM: HhH-GPD family protein; KEGG: bam:Bamb_2112 HhH-GPD family protein; HhH-GPD family protein complement(2211917..2212780) Burkholderia ambifaria MC40-6 6178721 YP_001808680.1 CDS cysS NC_010551.1 2212824 2214221 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(2212824..2214221) Burkholderia ambifaria MC40-6 6178729 YP_001808681.1 CDS BamMC406_1984 NC_010551.1 2214513 2215178 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_2114 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2214513..2215178 Burkholderia ambifaria MC40-6 6178736 YP_001808682.1 CDS BamMC406_1985 NC_010551.1 2215218 2215793 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bam:Bamb_2115 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 2215218..2215793 Burkholderia ambifaria MC40-6 6178626 YP_001808683.1 CDS BamMC406_1986 NC_010551.1 2215882 2216373 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bam:Bamb_2116 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2215882..2216373 Burkholderia ambifaria MC40-6 6178671 YP_001808684.1 CDS BamMC406_1987 NC_010551.1 2216400 2217200 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2216400..2217200 Burkholderia ambifaria MC40-6 6178766 YP_001808685.1 CDS BamMC406_1988 NC_010551.1 2217258 2218031 R TIGRFAM: serine O-acetyltransferase; KEGG: bam:Bamb_2118 serine O-acetyltransferase; serine O-acetyltransferase complement(2217258..2218031) Burkholderia ambifaria MC40-6 6178725 YP_001808686.1 CDS BamMC406_1989 NC_010551.1 2218319 2219140 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bam:Bamb_2119 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase complement(2218319..2219140) Burkholderia ambifaria MC40-6 6178707 YP_001808687.1 CDS BamMC406_1990 NC_010551.1 2219420 2220223 D PFAM: inositol monophosphatase; KEGG: bam:Bamb_2120 inositol monophosphatase; inositol-phosphate phosphatase 2219420..2220223 Burkholderia ambifaria MC40-6 6178623 YP_001808688.1 CDS BamMC406_1991 NC_010551.1 2220525 2222147 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_2121 FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2220525..2222147 Burkholderia ambifaria MC40-6 6178673 YP_001808689.1 CDS BamMC406_1992 NC_010551.1 2222169 2222279 D hypothetical protein 2222169..2222279 Burkholderia ambifaria MC40-6 6178809 YP_001808690.1 CDS BamMC406_1993 NC_010551.1 2222562 2223194 R PFAM: regulatory protein TetR; KEGG: reu:Reut_B4446 regulatory protein, TetR; TetR family transcriptional regulator complement(2222562..2223194) Burkholderia ambifaria MC40-6 6178817 YP_001808691.1 CDS BamMC406_1994 NC_010551.1 2223473 2224366 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reu:Reut_B4445 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2223473..2224366 Burkholderia ambifaria MC40-6 6178767 YP_001808692.1 CDS BamMC406_1995 NC_010551.1 2224456 2225319 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_PC00054 probable methyltransferase protein; type 11 methyltransferase 2224456..2225319 Burkholderia ambifaria MC40-6 6178807 YP_001808693.1 CDS BamMC406_1996 NC_010551.1 2225586 2225987 R KEGG: bam:Bamb_2122 hypothetical protein; hypothetical protein complement(2225586..2225987) Burkholderia ambifaria MC40-6 6178780 YP_001808694.1 CDS BamMC406_1997 NC_010551.1 2226059 2227174 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_2123 histidine kinase; histidine kinase complement(2226059..2227174) Burkholderia ambifaria MC40-6 6178789 YP_001808695.1 CDS BamMC406_1998 NC_010551.1 2227815 2230472 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2227815..2230472 Burkholderia ambifaria MC40-6 6178838 YP_001808696.1 CDS BamMC406_1999 NC_010551.1 2230453 2231712 D KEGG: bam:Bamb_2125 hypothetical protein; hypothetical protein 2230453..2231712 Burkholderia ambifaria MC40-6 6178826 YP_001808697.1 CDS BamMC406_2000 NC_010551.1 2231692 2232234 R KEGG: bam:Bamb_2126 FKBP-type peptidyl-prolyl cis-trans isomerases 2-like protein; FKBP-type peptidyl-prolyl cis-trans isomerase 2-like protein complement(2231692..2232234) Burkholderia ambifaria MC40-6 6178788 YP_001808698.1 CDS BamMC406_2001 NC_010551.1 2232267 2233487 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: bam:Bamb_2127 cupin 4 family protein; cupin 4 family protein 2232267..2233487 Burkholderia ambifaria MC40-6 6178871 YP_001808699.1 CDS BamMC406_2002 NC_010551.1 2233808 2233990 R KEGG: bam:Bamb_2129 hypothetical protein; hypothetical protein complement(2233808..2233990) Burkholderia ambifaria MC40-6 6178873 YP_001808700.1 CDS BamMC406_2003 NC_010551.1 2234103 2234879 R PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_2130 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(2234103..2234879) Burkholderia ambifaria MC40-6 6178882 YP_001808701.1 CDS BamMC406_2004 NC_010551.1 2234884 2236026 R PFAM: NlpBDapX family lipoprotein; KEGG: bam:Bamb_2131 NlpBDapX family lipoprotein; NlpB/DapX family lipoprotein complement(2234884..2236026) Burkholderia ambifaria MC40-6 6178867 YP_001808702.1 CDS BamMC406_2005 NC_010551.1 2236135 2237040 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2236135..2237040) Burkholderia ambifaria MC40-6 6178850 YP_001808703.1 CDS BamMC406_2006 NC_010551.1 2237087 2237689 R PFAM: Methyltransferase type 11; KEGG: bam:Bamb_2133 methyltransferase type 12; type 11 methyltransferase complement(2237087..2237689) Burkholderia ambifaria MC40-6 6178877 YP_001808704.1 CDS BamMC406_2007 NC_010551.1 2237698 2238873 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(2237698..2238873) Burkholderia ambifaria MC40-6 6178804 YP_001808705.1 CDS BamMC406_2008 NC_010551.1 2238909 2239571 R PFAM: peptidase M50; KEGG: bam:Bamb_2135 peptidase M50; peptidase M50 complement(2238909..2239571) Burkholderia ambifaria MC40-6 6178893 YP_001808706.1 CDS BamMC406_2009 NC_010551.1 2239621 2240253 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: bam:Bamb_2136 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(2239621..2240253) Burkholderia ambifaria MC40-6 6178911 YP_001808707.1 CDS BamMC406_2010 NC_010551.1 2240326 2241156 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: bam:Bamb_2137 PHP C-terminal domain protein; phosphotransferase domain-containing protein complement(2240326..2241156) Burkholderia ambifaria MC40-6 6178695 YP_001808708.1 CDS BamMC406_2011 NC_010551.1 2241239 2242129 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_2138 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2241239..2242129) Burkholderia ambifaria MC40-6 6178864 YP_001808709.1 CDS BamMC406_2012 NC_010551.1 2242344 2243195 R PFAM: protein of unknown function DUF455; KEGG: bam:Bamb_2139 protein of unknown function DUF455; hypothetical protein complement(2242344..2243195) Burkholderia ambifaria MC40-6 6178922 YP_001808710.1 CDS BamMC406_2013 NC_010551.1 2243352 2243876 D PFAM: transferase hexapeptide repeat containing protein; KEGG: bam:Bamb_2140 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 2243352..2243876 Burkholderia ambifaria MC40-6 6178855 YP_001808711.1 CDS BamMC406_2014 NC_010551.1 2243901 2244851 D PFAM: Hsp33 protein; KEGG: bam:Bamb_2141 HSP33 protein; Hsp33 protein 2243901..2244851 Burkholderia ambifaria MC40-6 6178937 YP_001808712.1 CDS BamMC406_2015 NC_010551.1 2244987 2245331 D KEGG: bam:Bamb_2142 hypothetical protein; hypothetical protein 2244987..2245331 Burkholderia ambifaria MC40-6 6178779 YP_001808713.1 CDS ftsB NC_010551.1 2245426 2245851 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(2245426..2245851) Burkholderia ambifaria MC40-6 6178959 YP_001808714.1 CDS eno NC_010551.1 2245933 2247216 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2245933..2247216) Burkholderia ambifaria MC40-6 6178941 YP_001808715.1 CDS BamMC406_2018 NC_010551.1 2247323 2248177 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2247323..2248177) Burkholderia ambifaria MC40-6 6178907 YP_001808716.1 CDS pyrG NC_010551.1 2248174 2249832 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2248174..2249832) Burkholderia ambifaria MC40-6 6178820 YP_001808717.1 CDS BamMC406_2020 NC_010551.1 2250004 2250849 R KEGG: bam:Bamb_2147 hypothetical protein; hypothetical protein complement(2250004..2250849) Burkholderia ambifaria MC40-6 6178991 YP_001808718.1 CDS BamMC406_2021 NC_010551.1 2250872 2253373 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: bam:Bamb_2148 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 complement(2250872..2253373) Burkholderia ambifaria MC40-6 6178958 YP_001808719.1 CDS BamMC406_2022 NC_010551.1 2253431 2254219 R PFAM: TatD-related deoxyribonuclease; KEGG: bam:Bamb_2149 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease complement(2253431..2254219) Burkholderia ambifaria MC40-6 6178992 YP_001808720.1 CDS BamMC406_2023 NC_010551.1 2254285 2254980 R KEGG: bam:Bamb_2150 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(2254285..2254980) Burkholderia ambifaria MC40-6 6179031 YP_001808721.1 CDS BamMC406_2024 NC_010551.1 2255036 2256289 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: bam:Bamb_2151 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(2255036..2256289) Burkholderia ambifaria MC40-6 6177095 YP_001808722.1 CDS BamMC406_2025 NC_010551.1 2256442 2257518 D KEGG: bam:Bamb_2152 hypothetical protein; hypothetical protein 2256442..2257518 Burkholderia ambifaria MC40-6 6179039 YP_001808723.1 CDS BamMC406_2026 NC_010551.1 2257529 2259226 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: bam:Bamb_2153 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 2257529..2259226 Burkholderia ambifaria MC40-6 6179073 YP_001808724.1 CDS BamMC406_2027 NC_010551.1 2259737 2260483 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: bam:Bamb_2154 peptide chain release factor 2; peptide chain release factor 2 2259737..2260483 Burkholderia ambifaria MC40-6 6179004 YP_001808725.1 CDS lysS NC_010551.1 2260560 2262086 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 2260560..2262086 Burkholderia ambifaria MC40-6 6176170 YP_001808726.1 CDS BamMC406_2029 NC_010551.1 2262385 2263140 D PFAM: 17 kDa surface antigen; KEGG: bam:Bamb_2156 17 kDa surface antigen; 17 kDa surface antigen 2262385..2263140 Burkholderia ambifaria MC40-6 6176033 YP_001808727.1 CDS BamMC406_2030 NC_010551.1 2263281 2263490 R TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: bam:Bamb_2157 protein of unknown function DUF528; FeS assembly protein IscX complement(2263281..2263490) Burkholderia ambifaria MC40-6 6176022 YP_001808728.1 CDS BamMC406_2031 NC_010551.1 2263566 2263907 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: bam:Bamb_2158 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system complement(2263566..2263907) Burkholderia ambifaria MC40-6 6175960 YP_001808729.1 CDS hscA NC_010551.1 2263996 2265864 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2263996..2265864) Burkholderia ambifaria MC40-6 6176288 YP_001808730.1 CDS hscB NC_010551.1 2265919 2266524 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2265919..2266524) Burkholderia ambifaria MC40-6 6176305 YP_001808731.1 CDS BamMC406_2034 NC_010551.1 2266543 2266866 R TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bam:Bamb_2161 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(2266543..2266866) Burkholderia ambifaria MC40-6 6176343 YP_001808732.1 CDS BamMC406_2035 NC_010551.1 2267009 2267416 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: bam:Bamb_2162 scaffold protein; scaffold protein complement(2267009..2267416) Burkholderia ambifaria MC40-6 6175941 YP_001808733.1 CDS BamMC406_2036 NC_010551.1 2267485 2268708 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2267485..2268708) Burkholderia ambifaria MC40-6 6175948 YP_001808734.1 CDS BamMC406_2037 NC_010551.1 2268781 2269320 R TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: bam:Bamb_2164 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(2268781..2269320) Burkholderia ambifaria MC40-6 6176344 YP_001808735.1 CDS BamMC406_2038 NC_010551.1 2269438 2269851 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bam:Bamb_2165 protein tyrosine phosphatase; protein tyrosine phosphatase complement(2269438..2269851) Burkholderia ambifaria MC40-6 6175983 YP_001808736.1 CDS BamMC406_2039 NC_010551.1 2270022 2270249 R KEGG: bam:Bamb_2166 hypothetical protein; hypothetical protein complement(2270022..2270249) Burkholderia ambifaria MC40-6 6176247 YP_001808737.1 CDS BamMC406_2040 NC_010551.1 2270377 2271789 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF162; KEGG: bam:Bamb_2167 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hypothetical protein complement(2270377..2271789) Burkholderia ambifaria MC40-6 6175943 YP_001808738.1 CDS BamMC406_2041 NC_010551.1 2271824 2272546 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bam:Bamb_2168 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein complement(2271824..2272546) Burkholderia ambifaria MC40-6 6175942 YP_001808739.1 CDS BamMC406_2042 NC_010551.1 2272729 2273538 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_2169 transcriptional regulator, IclR family; IclR family transcriptional regulator 2272729..2273538 Burkholderia ambifaria MC40-6 6175972 YP_001808740.1 CDS BamMC406_2043 NC_010551.1 2273641 2274795 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bam:Bamb_2170 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 complement(2273641..2274795) Burkholderia ambifaria MC40-6 6175984 YP_001808741.1 CDS BamMC406_2044 NC_010551.1 2275454 2276020 D TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: bam:Bamb_2171 phasin family protein; phasin family protein 2275454..2276020 Burkholderia ambifaria MC40-6 6175973 YP_001808742.1 CDS BamMC406_2045 NC_010551.1 2276235 2278013 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bam:Bamb_6503 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(2276235..2278013) Burkholderia ambifaria MC40-6 6176041 YP_001808743.1 CDS BamMC406_2046 NC_010551.1 2278284 2279918 R KEGG: bam:Bamb_2173 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase complement(2278284..2279918) Burkholderia ambifaria MC40-6 6177472 YP_001808744.1 CDS aceE NC_010551.1 2279989 2282685 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(2279989..2282685) Burkholderia ambifaria MC40-6 6176334 YP_001808745.1 CDS BamMC406_2048 NC_010551.1 2282959 2285475 D KEGG: bam:Bamb_2175 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2282959..2285475 Burkholderia ambifaria MC40-6 6179065 YP_001808746.1 CDS BamMC406_2049 NC_010551.1 2285472 2286110 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bam:Bamb_2176 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2285472..2286110 Burkholderia ambifaria MC40-6 6175953 YP_001808747.1 CDS BamMC406_2050 NC_010551.1 2286354 2287211 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2286354..2287211 Burkholderia ambifaria MC40-6 6176030 YP_001808748.1 CDS BamMC406_2051 NC_010551.1 2287466 2289553 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: bam:Bamb_2178 oligopeptidase A; oligopeptidase A 2287466..2289553 Burkholderia ambifaria MC40-6 6176332 YP_001808749.1 CDS BamMC406_2052 NC_010551.1 2289614 2290837 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2289614..2290837) Burkholderia ambifaria MC40-6 6175949 YP_001808750.1 CDS BamMC406_2053 NC_010551.1 2290974 2291666 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: bam:Bamb_2180 aspartate racemase; aspartate racemase 2290974..2291666 Burkholderia ambifaria MC40-6 6176248 YP_001808751.1 CDS BamMC406_2054 NC_010551.1 2291993 2292796 D KEGG: bam:Bamb_2181 hypothetical protein; hypothetical protein 2291993..2292796 Burkholderia ambifaria MC40-6 6176178 YP_001808752.1 CDS BamMC406_2055 NC_010551.1 2293112 2293927 D TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bam:Bamb_2182 exodeoxyribonuclease III Xth; exodeoxyribonuclease III Xth 2293112..2293927 Burkholderia ambifaria MC40-6 6176043 YP_001808753.1 CDS BamMC406_2056 NC_010551.1 2293952 2296063 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: bam:Bamb_2183 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(2293952..2296063) Burkholderia ambifaria MC40-6 6175961 YP_001808754.1 CDS BamMC406_2057 NC_010551.1 2296143 2297669 R KEGG: bam:Bamb_2184 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC complement(2296143..2297669) Burkholderia ambifaria MC40-6 6175968 YP_001808755.1 CDS BamMC406_2058 NC_010551.1 2297715 2298857 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_2185 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB complement(2297715..2298857) Burkholderia ambifaria MC40-6 6176152 YP_001808756.1 CDS BamMC406_2059 NC_010551.1 2299019 2300434 R TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bam:Bamb_2186 glutamine synthetase, type I; glutamine synthetase, type I complement(2299019..2300434) Burkholderia ambifaria MC40-6 6175975 YP_001808757.1 CDS BamMC406_2060 NC_010551.1 2300844 2301308 D SMART: Rhodanese domain protein; KEGG: bam:Bamb_2187 rhodanese domain protein; rhodanese domain-containing protein 2300844..2301308 Burkholderia ambifaria MC40-6 6176177 YP_001808758.1 CDS BamMC406_2061 NC_010551.1 2301436 2302251 R PFAM: molybdopterin binding domain; KEGG: bam:Bamb_2188 molybdopterin binding domain; molybdopterin binding domain-containing protein complement(2301436..2302251) Burkholderia ambifaria MC40-6 6176275 YP_001808759.1 CDS BamMC406_2062 NC_010551.1 2302248 2303075 R KEGG: bam:Bamb_2189 hypothetical protein; hypothetical protein complement(2302248..2303075) Burkholderia ambifaria MC40-6 6175947 YP_001808760.1 CDS BamMC406_2063 NC_010551.1 2303187 2304161 R PFAM: fatty acid hydroxylase; KEGG: bam:Bamb_2190 sterol desaturase-like protein; fatty acid hydroxylase complement(2303187..2304161) Burkholderia ambifaria MC40-6 6176155 YP_001808761.1 CDS BamMC406_2064 NC_010551.1 2304178 2305167 R KEGG: bam:Bamb_2191 hypothetical protein; hypothetical protein complement(2304178..2305167) Burkholderia ambifaria MC40-6 6176024 YP_001808762.1 CDS BamMC406_2065 NC_010551.1 2305348 2309559 R KEGG: bcn:Bcen_5922 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(2305348..2309559) Burkholderia ambifaria MC40-6 6176038 YP_001808763.1 CDS BamMC406_2066 NC_010551.1 2309583 2310962 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2309583..2310962 Burkholderia ambifaria MC40-6 6175987 YP_001808764.1 CDS BamMC406_2067 NC_010551.1 2311012 2311287 D PFAM: Fe(II) trafficking protein YggX; KEGG: bch:Bcen2424_2157 hypothetical protein; hypothetical protein 2311012..2311287 Burkholderia ambifaria MC40-6 6175965 YP_001808765.1 CDS BamMC406_2068 NC_010551.1 2311427 2312851 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_2195 major facilitator superfamily MFS_1; major facilitator transporter complement(2311427..2312851) Burkholderia ambifaria MC40-6 6178797 YP_001808766.1 CDS BamMC406_2069 NC_010551.1 2312862 2312957 D hypothetical protein 2312862..2312957 Burkholderia ambifaria MC40-6 6176035 YP_001808767.1 CDS BamMC406_2070 NC_010551.1 2313015 2314244 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_2196 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(2313015..2314244) Burkholderia ambifaria MC40-6 6176320 YP_001808768.1 CDS BamMC406_2071 NC_010551.1 2314241 2315995 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_2197 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2314241..2315995) Burkholderia ambifaria MC40-6 6176329 YP_001808769.1 CDS BamMC406_2072 NC_010551.1 2316169 2317071 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2198 transcriptional regulator, LysR family; LysR family transcriptional regulator 2316169..2317071 Burkholderia ambifaria MC40-6 6176902 YP_001808770.1 CDS BamMC406_2073 NC_010551.1 2317082 2318500 R PFAM: amino acid permease-associated region; KEGG: bte:BTH_II2283 amino acid permease; amino acid permease-associated protein complement(2317082..2318500) Burkholderia ambifaria MC40-6 6178813 YP_001808771.1 CDS BamMC406_2074 NC_010551.1 2318593 2319675 R PFAM: porin Gram-negative type; KEGG: bpd:BURPS668_A3099 outer membrane porin; porin complement(2318593..2319675) Burkholderia ambifaria MC40-6 6176915 YP_001808772.1 CDS BamMC406_2075 NC_010551.1 2319754 2320140 R PFAM: Endoribonuclease L-PSP; KEGG: bte:BTH_II2281 translation initiation inhibitor; endoribonuclease L-PSP complement(2319754..2320140) Burkholderia ambifaria MC40-6 6176926 YP_001808773.1 CDS BamMC406_2076 NC_010551.1 2320171 2321463 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2320171..2321463) Burkholderia ambifaria MC40-6 6177105 YP_001808774.1 CDS BamMC406_2077 NC_010551.1 2321598 2322059 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bte:BTH_II2279 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2321598..2322059 Burkholderia ambifaria MC40-6 6178551 YP_001808775.1 CDS BamMC406_2078 NC_010551.1 2322369 2323754 R PFAM: aminotransferase class-III; KEGG: bam:Bamb_2200 putative aminotransferase; putative aminotransferase complement(2322369..2323754) Burkholderia ambifaria MC40-6 6176963 YP_001808776.1 CDS BamMC406_2079 NC_010551.1 2323783 2325120 R PFAM: glutamine synthetase catalytic region; KEGG: bam:Bamb_2201 glutamate--ammonia ligase; glutamate--putrescine ligase complement(2323783..2325120) Burkholderia ambifaria MC40-6 6176984 YP_001808777.1 CDS BamMC406_2080 NC_010551.1 2325133 2325939 R PFAM: peptidase C26; KEGG: bam:Bamb_2202 peptidase C26; peptidase C26 complement(2325133..2325939) Burkholderia ambifaria MC40-6 6176994 YP_001808778.1 CDS BamMC406_2081 NC_010551.1 2326087 2326311 R KEGG: bur:Bcep18194_A5475 hypothetical protein; hypothetical protein complement(2326087..2326311) Burkholderia ambifaria MC40-6 6176525 YP_001808779.1 CDS BamMC406_2082 NC_010551.1 2326668 2327465 R PFAM: N-formylglutamate amidohydrolase; KEGG: bam:Bamb_2205 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(2326668..2327465) Burkholderia ambifaria MC40-6 6176965 YP_001808780.1 CDS BamMC406_2083 NC_010551.1 2327525 2328901 R catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase complement(2327525..2328901) Burkholderia ambifaria MC40-6 6177010 YP_001808781.1 CDS BamMC406_2084 NC_010551.1 2328925 2330148 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(2328925..2330148) Burkholderia ambifaria MC40-6 6177033 YP_001808782.1 CDS BamMC406_2085 NC_010551.1 2330153 2330791 R PFAM: protein of unknown function DUF886; KEGG: bam:Bamb_2208 protein of unknown function DUF886; hypothetical protein complement(2330153..2330791) Burkholderia ambifaria MC40-6 6177042 YP_001808783.1 CDS BamMC406_2086 NC_010551.1 2330794 2332482 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(2330794..2332482) Burkholderia ambifaria MC40-6 6177067 YP_001808784.1 CDS BamMC406_2087 NC_010551.1 2332521 2333216 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bam:Bamb_2210 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor complement(2332521..2333216) Burkholderia ambifaria MC40-6 6177094 YP_001808785.1 CDS BamMC406_2088 NC_010551.1 2333221 2334744 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(2333221..2334744) Burkholderia ambifaria MC40-6 6179029 YP_001808786.1 CDS BamMC406_2089 NC_010551.1 2334971 2335891 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_2212 extracellular solute-binding protein, family 3; extracellular solute-binding protein 2334971..2335891 Burkholderia ambifaria MC40-6 6177145 YP_001808787.1 CDS BamMC406_2090 NC_010551.1 2335913 2336668 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: bam:Bamb_2213 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(2335913..2336668) Burkholderia ambifaria MC40-6 6177150 YP_001808788.1 CDS BamMC406_2091 NC_010551.1 2336811 2337869 R KEGG: bam:Bamb_2214 alpha/beta hydrolase; alpha/beta hydrolase complement(2336811..2337869) Burkholderia ambifaria MC40-6 6177189 YP_001808789.1 CDS BamMC406_2092 NC_010551.1 2337988 2338929 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2215 transcriptional regulator, LysR family; LysR family transcriptional regulator 2337988..2338929 Burkholderia ambifaria MC40-6 6179102 YP_001808790.1 CDS BamMC406_2093 NC_010551.1 2339444 2340676 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2216 major facilitator superfamily MFS_1; major facilitator transporter 2339444..2340676 Burkholderia ambifaria MC40-6 6177285 YP_001808791.1 CDS BamMC406_2094 NC_010551.1 2340673 2340789 D hypothetical protein 2340673..2340789 Burkholderia ambifaria MC40-6 6177252 YP_001808792.1 CDS BamMC406_2095 NC_010551.1 2340798 2342300 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: bam:Bamb_2217 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase complement(2340798..2342300) Burkholderia ambifaria MC40-6 6177240 YP_001808793.1 CDS BamMC406_2096 NC_010551.1 2342564 2343544 R KEGG: bam:Bamb_2218 phosphoesterase, DHHA1; phosphoesterase, DHHA1 complement(2342564..2343544) Burkholderia ambifaria MC40-6 6177221 YP_001808794.1 CDS BamMC406_2098 NC_010551.1 2344394 2345755 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2220 major facilitator superfamily MFS_1; major facilitator transporter 2344394..2345755 Burkholderia ambifaria MC40-6 6177310 YP_001808795.1 CDS BamMC406_2099 NC_010551.1 2345742 2346791 D KEGG: bam:Bamb_2221 3-carboxymuconate cyclase-like protein; 6-phosphogluconolactonase 2345742..2346791 Burkholderia ambifaria MC40-6 6177220 YP_001808796.1 CDS BamMC406_2100 NC_010551.1 2346876 2347619 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_2222 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2346876..2347619) Burkholderia ambifaria MC40-6 6177227 YP_001808797.1 CDS BamMC406_2101 NC_010551.1 2347662 2348399 D KEGG: bam:Bamb_2223 hypothetical protein; hypothetical protein 2347662..2348399 Burkholderia ambifaria MC40-6 6177210 YP_001808798.1 CDS BamMC406_2102 NC_010551.1 2348441 2349061 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_2224 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD family hydrolase complement(2348441..2349061) Burkholderia ambifaria MC40-6 6176297 YP_001808799.1 CDS BamMC406_2103 NC_010551.1 2350153 2350848 D PFAM: helix-turn-helix domain protein; KEGG: bpd:BURPS668_2138 transcriptional regulator, XRE family; XRE family transcriptional regulator 2350153..2350848 Burkholderia ambifaria MC40-6 6177236 YP_001808800.1 CDS BamMC406_2104 NC_010551.1 2351000 2351530 R KEGG: bpd:BURPS668_2139 hypothetical protein; hypothetical protein complement(2351000..2351530) Burkholderia ambifaria MC40-6 6177448 YP_001808801.1 CDS BamMC406_2105 NC_010551.1 2351955 2352308 R KEGG: reu:Reut_C6417 hypothetical protein; hypothetical protein complement(2351955..2352308) Burkholderia ambifaria MC40-6 6177286 YP_001808802.1 CDS BamMC406_2107 NC_010551.1 2353705 2355720 R PFAM: Na+/solute symporter; KEGG: bam:Bamb_2228 Na+/solute symporter; Na+/solute symporter complement(2353705..2355720) Burkholderia ambifaria MC40-6 6177461 YP_001808803.1 CDS BamMC406_2108 NC_010551.1 2355724 2356068 R KEGG: bam:Bamb_2229 membrane protein-like protein; hypothetical protein complement(2355724..2356068) Burkholderia ambifaria MC40-6 6178983 YP_001808804.1 CDS BamMC406_2109 NC_010551.1 2356154 2358136 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(2356154..2358136) Burkholderia ambifaria MC40-6 6178996 YP_001808805.1 CDS BamMC406_2110 NC_010551.1 2358459 2359367 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_2231 protein of unknown function DUF6, transmembrane; hypothetical protein 2358459..2359367 Burkholderia ambifaria MC40-6 6179013 YP_001808806.1 CDS BamMC406_2111 NC_010551.1 2359482 2360087 D PFAM: conserved hypothetical protein; KEGG: bam:Bamb_2232 hypothetical protein; hypothetical protein 2359482..2360087 Burkholderia ambifaria MC40-6 6178935 YP_001808807.1 CDS BamMC406_2112 NC_010551.1 2360122 2361645 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: bam:Bamb_2233 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 2360122..2361645 Burkholderia ambifaria MC40-6 6178914 YP_001808808.1 CDS BamMC406_2113 NC_010551.1 2361839 2362315 D TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: bam:Bamb_2234 bacterioferritin; bacterioferritin 2361839..2362315 Burkholderia ambifaria MC40-6 6178857 YP_001808809.1 CDS BamMC406_2114 NC_010551.1 2362362 2363225 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 2362362..2363225 Burkholderia ambifaria MC40-6 6178910 YP_001808810.1 CDS BamMC406_2115 NC_010551.1 2363376 2363612 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_2236 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 2363376..2363612 Burkholderia ambifaria MC40-6 6176032 YP_001808811.1 CDS BamMC406_2116 NC_010551.1 2363881 2364561 D TIGRFAM: TonB family protein; KEGG: bam:Bamb_2237 TonB family protein; TonB family protein 2363881..2364561 Burkholderia ambifaria MC40-6 6178895 YP_001808812.1 CDS BamMC406_2117 NC_010551.1 2364598 2365329 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: bam:Bamb_2238 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2364598..2365329 Burkholderia ambifaria MC40-6 6178852 YP_001808813.1 CDS BamMC406_2118 NC_010551.1 2365343 2365771 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bam:Bamb_2239 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2365343..2365771 Burkholderia ambifaria MC40-6 6178527 YP_001808814.1 CDS BamMC406_2119 NC_010551.1 2366166 2367143 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2240 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2366166..2367143) Burkholderia ambifaria MC40-6 6178760 YP_001808815.1 CDS BamMC406_2120 NC_010551.1 2367266 2368138 D PFAM: Pirin domain protein; KEGG: bam:Bamb_2241 pirin domain protein domain protein; pirin domain-containing protein 2367266..2368138 Burkholderia ambifaria MC40-6 6178841 YP_001808816.1 CDS BamMC406_2121 NC_010551.1 2368238 2368720 D PFAM: Domain of unknown function DUF1857; KEGG: bam:Bamb_2242 hypothetical protein; hypothetical protein 2368238..2368720 Burkholderia ambifaria MC40-6 6178795 YP_001808817.1 CDS BamMC406_2122 NC_010551.1 2368859 2369104 D KEGG: bam:Bamb_2243 hypothetical protein; hypothetical protein 2368859..2369104 Burkholderia ambifaria MC40-6 6178786 YP_001808818.1 CDS BamMC406_2123 NC_010551.1 2369423 2370820 R KEGG: bam:Bamb_2244 polyferredoxin-like protein; polyferredoxin-like protein complement(2369423..2370820) Burkholderia ambifaria MC40-6 6179069 YP_001808819.1 CDS BamMC406_2124 NC_010551.1 2370817 2371659 R PFAM: iron permease FTR1; KEGG: bam:Bamb_2245 iron permease FTR1; iron permease FTR1 complement(2370817..2371659) Burkholderia ambifaria MC40-6 6176799 YP_001808820.1 CDS BamMC406_2125 NC_010551.1 2371718 2372050 R KEGG: bam:Bamb_2246 hypothetical protein; hypothetical protein complement(2371718..2372050) Burkholderia ambifaria MC40-6 6177197 YP_001808821.1 CDS BamMC406_2126 NC_010551.1 2372106 2372657 R KEGG: bam:Bamb_2247 uncharacterized protein probably involved in high-affinity Fe2+ transport; hypothetical protein complement(2372106..2372657) Burkholderia ambifaria MC40-6 6176406 YP_001808822.1 CDS BamMC406_2127 NC_010551.1 2372878 2374968 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2372878..2374968) Burkholderia ambifaria MC40-6 6176421 YP_001808823.1 CDS BamMC406_2128 NC_010551.1 2375217 2376416 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2375217..2376416 Burkholderia ambifaria MC40-6 6177466 YP_001808824.1 CDS BamMC406_2129 NC_010551.1 2376566 2377354 R catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase complement(2376566..2377354) Burkholderia ambifaria MC40-6 6177458 YP_001808825.1 CDS BamMC406_2130 NC_010551.1 2377519 2378490 D PFAM: aldo/keto reductase; KEGG: bam:Bamb_2251 aldo/keto reductase; aldo/keto reductase 2377519..2378490 Burkholderia ambifaria MC40-6 6177456 YP_001808826.1 CDS BamMC406_2131 NC_010551.1 2378602 2379447 D PFAM: protein of unknown function DUF519; KEGG: bam:Bamb_2252 protein of unknown function DUF519; hypothetical protein 2378602..2379447 Burkholderia ambifaria MC40-6 6176056 YP_001808827.1 CDS BamMC406_2132 NC_010551.1 2379462 2379797 R KEGG: bam:Bamb_2253 hypothetical protein; hypothetical protein complement(2379462..2379797) Burkholderia ambifaria MC40-6 6176727 YP_001808828.1 CDS BamMC406_2133 NC_010551.1 2379945 2380091 R KEGG: bam:Bamb_2254 hypothetical protein; hypothetical protein complement(2379945..2380091) Burkholderia ambifaria MC40-6 6177295 YP_001808829.1 CDS BamMC406_2134 NC_010551.1 2380307 2380711 R TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bam:Bamb_2255 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2380307..2380711) Burkholderia ambifaria MC40-6 6177826 YP_001808830.1 CDS BamMC406_2135 NC_010551.1 2386758 2387975 D KEGG: bam:Bamb_2256 hypothetical protein; hypothetical protein 2386758..2387975 Burkholderia ambifaria MC40-6 6175980 YP_001808831.1 CDS BamMC406_2136 NC_010551.1 2388191 2389021 D PFAM: regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: bam:Bamb_2257 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2388191..2389021 Burkholderia ambifaria MC40-6 6175991 YP_001808832.1 CDS BamMC406_2137 NC_010551.1 2389097 2389771 D KEGG: bam:Bamb_2258 membrane protein-like protein; hypothetical protein 2389097..2389771 Burkholderia ambifaria MC40-6 6175997 YP_001808833.1 CDS BamMC406_2138 NC_010551.1 2389908 2390555 D KEGG: bam:Bamb_2259 hypothetical protein; hypothetical protein 2389908..2390555 Burkholderia ambifaria MC40-6 6176002 YP_001808834.1 CDS BamMC406_2139 NC_010551.1 2390634 2391788 R PFAM: peptidase M14 carboxypeptidase A; KEGG: bam:Bamb_2260 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A complement(2390634..2391788) Burkholderia ambifaria MC40-6 6176006 YP_001808835.1 CDS BamMC406_2140 NC_010551.1 2391975 2392757 R PFAM: protein of unknown function DUF328; KEGG: bam:Bamb_2261 hypothetical protein; hypothetical protein complement(2391975..2392757) Burkholderia ambifaria MC40-6 6176009 YP_001808836.1 CDS BamMC406_2141 NC_010551.1 2392815 2393312 D SMART: Nucleotide binding protein PINc; KEGG: bam:Bamb_2262 protein of unknown function DUF132; nucleotide binding protein PINc 2392815..2393312 Burkholderia ambifaria MC40-6 6176019 YP_001808837.1 CDS BamMC406_2142 NC_010551.1 2393344 2394516 D catalyzes the transfer of an amino moiety; putative aminotransferase 2393344..2394516 Burkholderia ambifaria MC40-6 6176028 YP_001808838.1 CDS BamMC406_2143 NC_010551.1 2394565 2395221 R KEGG: bam:Bamb_2264 glutathione S-transferase-like protein; glutathione S-transferase-like protein complement(2394565..2395221) Burkholderia ambifaria MC40-6 6176031 YP_001808839.1 CDS BamMC406_2144 NC_010551.1 2395433 2396224 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2395433..2396224 Burkholderia ambifaria MC40-6 6176045 YP_001808840.1 CDS BamMC406_2145 NC_010551.1 2396397 2397089 D PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_2266 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2396397..2397089 Burkholderia ambifaria MC40-6 6176157 YP_001808841.1 CDS BamMC406_2146 NC_010551.1 2397140 2397616 R PFAM: MaoC domain protein dehydratase; KEGG: bam:Bamb_2267 MaoC domain protein dehydratase; dehydratase complement(2397140..2397616) Burkholderia ambifaria MC40-6 6176130 YP_001808842.1 CDS BamMC406_2147 NC_010551.1 2397613 2398074 R PFAM: MaoC domain protein dehydratase; KEGG: bam:Bamb_2268 MaoC domain protein dehydratase; dehydratase complement(2397613..2398074) Burkholderia ambifaria MC40-6 6176140 YP_001808843.1 CDS BamMC406_2148 NC_010551.1 2398107 2399240 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_2269 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2398107..2399240) Burkholderia ambifaria MC40-6 6176145 YP_001808844.1 CDS BamMC406_2149 NC_010551.1 2399260 2400456 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bam:Bamb_2270 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2399260..2400456) Burkholderia ambifaria MC40-6 6176159 YP_001808845.1 CDS BamMC406_2150 NC_010551.1 2400609 2401031 R PFAM: protein of unknown function DUF1178; KEGG: bam:Bamb_2271 protein of unknown function DUF1178; hypothetical protein complement(2400609..2401031) Burkholderia ambifaria MC40-6 6176179 YP_001808846.1 CDS BamMC406_2151 NC_010551.1 2401170 2401760 R PFAM: NUDIX hydrolase; KEGG: bam:Bamb_2272 NUDIX hydrolase; NUDIX hydrolase complement(2401170..2401760) Burkholderia ambifaria MC40-6 6176190 YP_001808847.1 CDS BamMC406_2152 NC_010551.1 2401797 2402093 R KEGG: bam:Bamb_2273 hypothetical protein; hypothetical protein complement(2401797..2402093) Burkholderia ambifaria MC40-6 6176195 YP_001808848.1 CDS BamMC406_2153 NC_010551.1 2402093 2403559 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2402093..2403559) Burkholderia ambifaria MC40-6 6176203 YP_001808849.1 CDS BamMC406_2154 NC_010551.1 2403584 2405074 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2403584..2405074) Burkholderia ambifaria MC40-6 6176218 YP_001808850.1 CDS BamMC406_2155 NC_010551.1 2405093 2407147 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2405093..2407147) Burkholderia ambifaria MC40-6 6176242 YP_001808851.1 CDS BamMC406_2156 NC_010551.1 2407165 2407470 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2407165..2407470) Burkholderia ambifaria MC40-6 6176265 YP_001808852.1 CDS BamMC406_2157 NC_010551.1 2407488 2408138 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2407488..2408138) Burkholderia ambifaria MC40-6 6176287 YP_001808853.1 CDS BamMC406_2158 NC_010551.1 2408244 2408732 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2408244..2408732) Burkholderia ambifaria MC40-6 6176292 YP_001808854.1 CDS BamMC406_2159 NC_010551.1 2408748 2409815 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2408748..2409815) Burkholderia ambifaria MC40-6 6176324 YP_001808855.1 CDS BamMC406_2160 NC_010551.1 2409816 2412146 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(2409816..2412146) Burkholderia ambifaria MC40-6 6176317 YP_001808856.1 CDS BamMC406_2161 NC_010551.1 2412232 2413554 R KEGG: bur:Bcep18194_A5572 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(2412232..2413554) Burkholderia ambifaria MC40-6 6176325 YP_001808857.1 CDS BamMC406_2162 NC_010551.1 2413551 2414036 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2413551..2414036) Burkholderia ambifaria MC40-6 6176347 YP_001808858.1 CDS BamMC406_2163 NC_010551.1 2414205 2415458 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(2414205..2415458) Burkholderia ambifaria MC40-6 6176354 YP_001808859.1 CDS BamMC406_2164 NC_010551.1 2415468 2416070 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(2415468..2416070) Burkholderia ambifaria MC40-6 6176363 YP_001808860.1 CDS BamMC406_2165 NC_010551.1 2416092 2416571 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2416092..2416571) Burkholderia ambifaria MC40-6 6176378 YP_001808861.1 CDS BamMC406_2166 NC_010551.1 2416635 2416994 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2416635..2416994) Burkholderia ambifaria MC40-6 6176382 YP_001808862.1 CDS secG NC_010551.1 2417344 2417721 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: bam:Bamb_2288 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(2417344..2417721) Burkholderia ambifaria MC40-6 6177584 YP_001808863.1 CDS tpiA NC_010551.1 2417794 2418549 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(2417794..2418549) Burkholderia ambifaria MC40-6 6177654 YP_001808864.1 CDS BamMC406_2169 NC_010551.1 2418691 2419710 R TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_2290 alcohol dehydrogenase, zinc-binding domain protein; PIG3 family NAD(P)H quinone oxidoreductase complement(2418691..2419710) Burkholderia ambifaria MC40-6 6177688 YP_001808865.1 CDS BamMC406_2170 NC_010551.1 2419843 2421987 R KEGG: bam:Bamb_2291 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(2419843..2421987) Burkholderia ambifaria MC40-6 6177701 YP_001808866.1 CDS rpsO NC_010551.1 2422279 2422548 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(2422279..2422548) Burkholderia ambifaria MC40-6 6177190 YP_001808867.1 CDS BamMC406_2172 NC_010551.1 2422665 2423924 R KEGG: bam:Bamb_2293 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; branched chain amino acid ABC transporter periplasmic ligand-binding protein complement(2422665..2423924) Burkholderia ambifaria MC40-6 6177794 YP_001808868.1 CDS BamMC406_2173 NC_010551.1 2424116 2424628 D KEGG: bam:Bamb_2294 hypothetical protein; hypothetical protein 2424116..2424628 Burkholderia ambifaria MC40-6 6178942 YP_001808869.1 CDS BamMC406_2174 NC_010551.1 2425022 2425663 D PFAM: carbonic anhydrase; KEGG: bam:Bamb_2296 carbonate dehydratase; carbonate dehydratase 2425022..2425663 Burkholderia ambifaria MC40-6 6177497 YP_001808870.1 CDS BamMC406_2175 NC_010551.1 2425702 2427252 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bam:Bamb_2297 sulphate transporter; sulfate transporter 2425702..2427252 Burkholderia ambifaria MC40-6 6177517 YP_001808871.1 CDS BamMC406_2176 NC_010551.1 2427324 2428868 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(2427324..2428868) Burkholderia ambifaria MC40-6 6177527 YP_001808872.1 CDS BamMC406_2177 NC_010551.1 2429188 2430057 R TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bam:Bamb_2299 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(2429188..2430057) Burkholderia ambifaria MC40-6 6177498 YP_001808873.1 CDS BamMC406_2178 NC_010551.1 2430073 2430717 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(2430073..2430717) Burkholderia ambifaria MC40-6 6177524 YP_001808874.1 CDS BamMC406_2179 NC_010551.1 2430845 2431861 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(2430845..2431861) Burkholderia ambifaria MC40-6 6177554 YP_001808875.1 CDS ilvH NC_010551.1 2431958 2432449 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(2431958..2432449) Burkholderia ambifaria MC40-6 6177572 YP_001808876.1 CDS BamMC406_2181 NC_010551.1 2432562 2434325 R acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit complement(2432562..2434325) Burkholderia ambifaria MC40-6 6177568 YP_001808877.1 CDS BamMC406_2182 NC_010551.1 2434679 2435242 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 2434679..2435242 Burkholderia ambifaria MC40-6 6177535 YP_001808878.1 CDS BamMC406_2183 NC_010551.1 2435239 2435679 D KEGG: bam:Bamb_2305 hypothetical protein; hypothetical protein 2435239..2435679 Burkholderia ambifaria MC40-6 6177586 YP_001808879.1 CDS BamMC406_2184 NC_010551.1 2435706 2436470 D KEGG: bam:Bamb_2306 hypothetical protein; hypothetical protein 2435706..2436470 Burkholderia ambifaria MC40-6 6177581 YP_001808880.1 CDS BamMC406_2185 NC_010551.1 2436546 2436986 D PFAM: RDD domain containing protein; KEGG: bam:Bamb_2307 RDD domain containing protein; RDD domain-containing protein 2436546..2436986 Burkholderia ambifaria MC40-6 6177565 YP_001808881.1 CDS BamMC406_2186 NC_010551.1 2437221 2438159 D PFAM: metallophosphoesterase; KEGG: bam:Bamb_2308 metallophosphoesterase; metallophosphoesterase 2437221..2438159 Burkholderia ambifaria MC40-6 6177618 YP_001808882.1 CDS BamMC406_2187 NC_010551.1 2438189 2439223 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_2309 glycosyl transferase, group 1; group 1 glycosyl transferase 2438189..2439223 Burkholderia ambifaria MC40-6 6177649 YP_001808883.1 CDS BamMC406_2188 NC_010551.1 2439220 2439756 D PFAM: diacylglycerol kinase; KEGG: bam:Bamb_2310 diacylglycerol kinase; diacylglycerol kinase 2439220..2439756 Burkholderia ambifaria MC40-6 6177621 YP_001808884.1 CDS BamMC406_2189 NC_010551.1 2439950 2440705 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_2311 transcriptional regulator, TetR family; TetR family transcriptional regulator 2439950..2440705 Burkholderia ambifaria MC40-6 6177667 YP_001808885.1 CDS BamMC406_2190 NC_010551.1 2440702 2441286 D PFAM: conserved hypothetical protein; KEGG: bam:Bamb_2312 conserved hypothetical protein 730; hypothetical protein 2440702..2441286 Burkholderia ambifaria MC40-6 6177637 YP_001808886.1 CDS BamMC406_2191 NC_010551.1 2441309 2442070 D Converts glucose to D-glucono-1,5 lactone; glucose-1-dehydrogenase 2441309..2442070 Burkholderia ambifaria MC40-6 6177645 YP_001808887.1 CDS BamMC406_2192 NC_010551.1 2442260 2444197 D KEGG: bam:Bamb_2314 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; glycosyltransferase 2442260..2444197 Burkholderia ambifaria MC40-6 6177624 YP_001808888.1 CDS BamMC406_2193 NC_010551.1 2444279 2444896 R PFAM: protein of unknown function DUF924; KEGG: bam:Bamb_2315 protein of unknown function DUF924; hypothetical protein complement(2444279..2444896) Burkholderia ambifaria MC40-6 6177715 YP_001808889.1 CDS BamMC406_2194 NC_010551.1 2444893 2445624 R PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: bam:Bamb_2316 threonyl/alanyl tRNA synthetase, SAD; threonyl/alanyl tRNA synthetase SAD complement(2444893..2445624) Burkholderia ambifaria MC40-6 6177659 YP_001808890.1 CDS BamMC406_2195 NC_010551.1 2445729 2446139 R PFAM: globin; KEGG: bam:Bamb_2317 globin; globin complement(2445729..2446139) Burkholderia ambifaria MC40-6 6177689 YP_001808891.1 CDS BamMC406_2196 NC_010551.1 2446183 2448687 R PFAM: protein of unknown function DUF214; KEGG: bam:Bamb_2318 protein of unknown function DUF214; hypothetical protein complement(2446183..2448687) Burkholderia ambifaria MC40-6 6177699 YP_001808892.1 CDS BamMC406_2197 NC_010551.1 2448795 2449412 R KEGG: bam:Bamb_2319 hypothetical protein; hypothetical protein complement(2448795..2449412) Burkholderia ambifaria MC40-6 6177745 YP_001808893.1 CDS BamMC406_2198 NC_010551.1 2449635 2449955 R PFAM: small multidrug resistance protein; KEGG: bam:Bamb_2320 small multidrug resistance protein; small multidrug resistance protein complement(2449635..2449955) Burkholderia ambifaria MC40-6 6177730 YP_001808894.1 CDS BamMC406_2199 NC_010551.1 2450117 2450398 R PFAM: protein of unknown function DUF333; KEGG: bam:Bamb_2321 protein of unknown function DUF333; hypothetical protein complement(2450117..2450398) Burkholderia ambifaria MC40-6 6177704 YP_001808895.1 CDS BamMC406_2200 NC_010551.1 2450585 2451283 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_2322 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2450585..2451283) Burkholderia ambifaria MC40-6 6177746 YP_001808896.1 CDS BamMC406_2201 NC_010551.1 2451276 2454113 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: bam:Bamb_2323 osmosensitive K+ channel signal transduction histidine kinase; osmosensitive K+ channel signal transduction histidine kinase complement(2451276..2454113) Burkholderia ambifaria MC40-6 6177768 YP_001808897.1 CDS BamMC406_2202 NC_010551.1 2454259 2454840 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(2454259..2454840) Burkholderia ambifaria MC40-6 6177504 YP_001808898.1 CDS BamMC406_2203 NC_010551.1 2454865 2456949 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(2454865..2456949) Burkholderia ambifaria MC40-6 6177793 YP_001808899.1 CDS BamMC406_2204 NC_010551.1 2457031 2458836 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(2457031..2458836) Burkholderia ambifaria MC40-6 6177805 YP_001808900.1 CDS BamMC406_2205 NC_010551.1 2458833 2458964 R KEGG: bcn:Bcen_1677 potassium-transporting ATPase, KdpF subunit-related protein; potassium-transporting ATPase KdpF complement(2458833..2458964) Burkholderia ambifaria MC40-6 6177819 YP_001808901.1 CDS BamMC406_2206 NC_010551.1 2459235 2460209 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_2328 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(2459235..2460209) Burkholderia ambifaria MC40-6 6177834 YP_001808902.1 CDS mgsA NC_010551.1 2461368 2461760 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(2461368..2461760) Burkholderia ambifaria MC40-6 6177790 YP_001808903.1 CDS BamMC406_2208 NC_010551.1 2461815 2462594 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_2330 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2461815..2462594) Burkholderia ambifaria MC40-6 6177818 YP_001808904.1 CDS upp NC_010551.1 2462819 2463469 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2462819..2463469 Burkholderia ambifaria MC40-6 6177825 YP_001808905.1 CDS BamMC406_2210 NC_010551.1 2463686 2464414 D PFAM: protein of unknown function DUF28; KEGG: bam:Bamb_2332 hypothetical protein; hypothetical protein 2463686..2464414 Burkholderia ambifaria MC40-6 6177777 YP_001808906.1 CDS BamMC406_2211 NC_010551.1 2464416 2464523 D hypothetical protein 2464416..2464523 Burkholderia ambifaria MC40-6 6177875 YP_001808907.1 CDS BamMC406_2212 NC_010551.1 2464520 2465800 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2464520..2465800 Burkholderia ambifaria MC40-6 6177916 YP_001808908.1 CDS BamMC406_2213 NC_010551.1 2465908 2466828 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2465908..2466828 Burkholderia ambifaria MC40-6 6177910 YP_001808909.1 CDS BamMC406_2214 NC_010551.1 2466825 2467583 D catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP; nicotinic acid mononucleotide adenylyltransferase 2466825..2467583 Burkholderia ambifaria MC40-6 6177925 YP_001808910.1 CDS BamMC406_2215 NC_010551.1 2467588 2468028 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bam:Bamb_2336 iojap-like protein; iojap family protein 2467588..2468028 Burkholderia ambifaria MC40-6 6177928 YP_001808911.1 CDS BamMC406_2216 NC_010551.1 2468048 2468518 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2468048..2468518 Burkholderia ambifaria MC40-6 6177970 YP_001808912.1 CDS BamMC406_2217 NC_010551.1 2468569 2469201 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2468569..2469201 Burkholderia ambifaria MC40-6 6177990 YP_001808913.1 CDS BamMC406_2218 NC_010551.1 2469210 2470679 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: bam:Bamb_2339 ribonuclease, Rne/Rng family; ribonuclease 2469210..2470679 Burkholderia ambifaria MC40-6 6178021 YP_001808914.1 CDS BamMC406_2219 NC_010551.1 2470801 2471136 D PFAM: protein of unknown function DUF469; KEGG: bam:Bamb_2340 protein of unknown function DUF469; hypothetical protein 2470801..2471136 Burkholderia ambifaria MC40-6 6178042 YP_001808915.1 CDS BamMC406_2220 NC_010551.1 2471522 2471617 R hypothetical protein complement(2471522..2471617) Burkholderia ambifaria MC40-6 6178053 YP_001808916.1 CDS BamMC406_2221 NC_010551.1 2471633 2472775 D KEGG: bam:Bamb_2341 hypothetical protein; hypothetical protein 2471633..2472775 Burkholderia ambifaria MC40-6 6177995 YP_001808917.1 CDS BamMC406_2222 NC_010551.1 2473045 2474013 D PFAM: PRC-barrel domain protein; KEGG: bam:Bamb_2342 PRC-barrel domain protein; PRC-barrel domain-containing protein 2473045..2474013 Burkholderia ambifaria MC40-6 6178016 YP_001808918.1 CDS BamMC406_2223 NC_010551.1 2474010 2475269 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2343 major facilitator superfamily MFS_1; major facilitator transporter 2474010..2475269 Burkholderia ambifaria MC40-6 6178108 YP_001808919.1 CDS BamMC406_2224 NC_010551.1 2475295 2475861 D KEGG: bam:Bamb_2344 membrane protein-like protein; hypothetical protein 2475295..2475861 Burkholderia ambifaria MC40-6 6178120 YP_001808920.1 CDS BamMC406_2225 NC_010551.1 2475915 2476295 R KEGG: bam:Bamb_2345 integral membrane protein-like protein; integral membrane protein-like protein complement(2475915..2476295) Burkholderia ambifaria MC40-6 6178138 YP_001808921.1 CDS BamMC406_2226 NC_010551.1 2476392 2478173 R KEGG: bam:Bamb_2346 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(2476392..2478173) Burkholderia ambifaria MC40-6 6178121 YP_001808922.1 CDS BamMC406_2227 NC_010551.1 2478367 2479119 D PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_2347 glycosyl transferase, family 2; glycosyl transferase family protein 2478367..2479119 Burkholderia ambifaria MC40-6 6178063 YP_001808923.1 CDS BamMC406_2228 NC_010551.1 2479264 2480106 D PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_2348 glycosyl transferase, family 2; glycosyl transferase family protein 2479264..2480106 Burkholderia ambifaria MC40-6 6178177 YP_001808924.1 CDS BamMC406_2229 NC_010551.1 2480243 2481523 D PFAM: O-antigen polymerase; KEGG: bam:Bamb_2349 O-antigen polymerase; O-antigen polymerase 2480243..2481523 Burkholderia ambifaria MC40-6 6178077 YP_001808925.1 CDS BamMC406_2230 NC_010551.1 2481697 2482905 R PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_2350 glycosyl transferase, family 9; glycosyl transferase family protein complement(2481697..2482905) Burkholderia ambifaria MC40-6 6178203 YP_001808926.1 CDS BamMC406_2231 NC_010551.1 2483214 2484308 R PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_2351 glycosyl transferase, family 9; glycosyl transferase family protein complement(2483214..2484308) Burkholderia ambifaria MC40-6 6178224 YP_001808927.1 CDS dnaE NC_010551.1 2484629 2488201 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(2484629..2488201) Burkholderia ambifaria MC40-6 6177719 YP_001808928.1 CDS BamMC406_2233 NC_010551.1 2488385 2489239 D PFAM: Rhodanese domain protein; KEGG: bam:Bamb_2353 hypothetical protein; rhodanese superfamily protein 2488385..2489239 Burkholderia ambifaria MC40-6 6177736 YP_001808929.1 CDS BamMC406_2234 NC_010551.1 2489262 2490146 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 2489262..2490146 Burkholderia ambifaria MC40-6 6177792 YP_001808930.1 CDS BamMC406_2235 NC_010551.1 2490225 2491760 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bvi:Bcep1808_2405 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(2490225..2491760) Burkholderia ambifaria MC40-6 6177743 YP_001808931.1 CDS BamMC406_2236 NC_010551.1 2492206 2492589 R KEGG: bam:Bamb_2356 periplasmic protein; hypothetical protein complement(2492206..2492589) Burkholderia ambifaria MC40-6 6177824 YP_001808932.1 CDS BamMC406_2237 NC_010551.1 2492688 2492882 R KEGG: bam:Bamb_2357 hypothetical protein; hypothetical protein complement(2492688..2492882) Burkholderia ambifaria MC40-6 6177845 YP_001808933.1 CDS purT NC_010551.1 2492901 2494115 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(2492901..2494115) Burkholderia ambifaria MC40-6 6177851 YP_001808934.1 CDS BamMC406_2239 NC_010551.1 2494332 2494877 D PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: bam:Bamb_2359 protein of unknown function DUF306, MetA and HslJ; hypothetical protein 2494332..2494877 Burkholderia ambifaria MC40-6 6177844 YP_001808935.1 CDS BamMC406_2240 NC_010551.1 2495057 2499889 D PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bam:Bamb_2360 cell divisionFtsK/SpoIIIE; cell division protein FtsK 2495057..2499889 Burkholderia ambifaria MC40-6 6177882 YP_001808936.1 CDS BamMC406_2241 NC_010551.1 2499990 2501237 R KEGG: bam:Bamb_2361 3-carboxymuconate cyclase-like protein; 6-phosphogluconolactonase complement(2499990..2501237) Burkholderia ambifaria MC40-6 6177884 YP_001808937.1 CDS BamMC406_2242 NC_010551.1 2501404 2503233 D PFAM: glycoside hydrolase 15-related; KEGG: bam:Bamb_2362 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 2501404..2503233 Burkholderia ambifaria MC40-6 6177962 YP_001808938.1 CDS BamMC406_2243 NC_010551.1 2503445 2504926 D TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bam:Bamb_2363 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase 2503445..2504926 Burkholderia ambifaria MC40-6 6178044 YP_001808939.1 CDS BamMC406_2244 NC_010551.1 2505030 2505608 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_2364 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2505030..2505608) Burkholderia ambifaria MC40-6 6178051 YP_001808940.1 CDS BamMC406_2245 NC_010551.1 2505818 2506843 D Involved in the electron transport chain; ferredoxin 2505818..2506843 Burkholderia ambifaria MC40-6 6178078 YP_001808941.1 CDS BamMC406_2246 NC_010551.1 2506840 2507484 D KEGG: bam:Bamb_2366 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III 2506840..2507484 Burkholderia ambifaria MC40-6 6177065 YP_001808942.1 CDS BamMC406_2247 NC_010551.1 2507563 2508492 R PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: bam:Bamb_2367 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2507563..2508492) Burkholderia ambifaria MC40-6 6177184 YP_001808943.1 CDS BamMC406_2248 NC_010551.1 2508764 2509198 D PFAM: Domain of unknown function DUF1841; KEGG: bam:Bamb_2368 hypothetical protein; hypothetical protein 2508764..2509198 Burkholderia ambifaria MC40-6 6177437 YP_001808944.1 CDS BamMC406_2249 NC_010551.1 2509271 2509630 R PFAM: cytochrome c class I; KEGG: bam:Bamb_2369 cytochrome c, class I; cytochrome c class I complement(2509271..2509630) Burkholderia ambifaria MC40-6 6176660 YP_001808945.1 CDS BamMC406_2250 NC_010551.1 2509671 2510030 R PFAM: cytochrome c class I; KEGG: bam:Bamb_2370 cytochrome c, class I; cytochrome c class I complement(2509671..2510030) Burkholderia ambifaria MC40-6 6176611 YP_001808946.1 CDS BamMC406_2251 NC_010551.1 2510275 2511117 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_2371 ATPase associated with various cellular activities, AAA_5; ATPase 2510275..2511117 Burkholderia ambifaria MC40-6 6176116 YP_001808947.1 CDS BamMC406_2252 NC_010551.1 2511139 2512314 D KEGG: bam:Bamb_2372 hypothetical protein; hypothetical protein 2511139..2512314 Burkholderia ambifaria MC40-6 6176879 YP_001808948.1 CDS BamMC406_2253 NC_010551.1 2512371 2513582 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: bam:Bamb_2373 benzoate transporter; benzoate transporter 2512371..2513582 Burkholderia ambifaria MC40-6 6176415 YP_001808949.1 CDS BamMC406_2254 NC_010551.1 2513750 2514703 D KEGG: bam:Bamb_2374 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 2513750..2514703 Burkholderia ambifaria MC40-6 6177256 YP_001808950.1 CDS BamMC406_2255 NC_010551.1 2514949 2515404 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: bam:Bamb_2375 3-demethylubiquinone-9 3-methyltransferase; glyoxalase/bleomycin resistance protein/dioxygenase 2514949..2515404 Burkholderia ambifaria MC40-6 6177188 YP_001808951.1 CDS BamMC406_2256 NC_010551.1 2515488 2517038 R PFAM: Na+/solute symporter; KEGG: bam:Bamb_2376 Na+/solute symporter; Na+/solute symporter complement(2515488..2517038) Burkholderia ambifaria MC40-6 6176409 YP_001808952.1 CDS BamMC406_2257 NC_010551.1 2517035 2517277 R KEGG: bam:Bamb_2377 hypothetical protein; hypothetical protein complement(2517035..2517277) Burkholderia ambifaria MC40-6 6176578 YP_001808953.1 CDS BamMC406_2258 NC_010551.1 2517476 2518393 R KEGG: bam:Bamb_2378 spermidine synthase-like protein; spermidine synthase-like protein complement(2517476..2518393) Burkholderia ambifaria MC40-6 6177427 YP_001808954.1 CDS BamMC406_2259 NC_010551.1 2518539 2518793 D KEGG: bam:Bamb_2379 hypothetical protein; hypothetical protein 2518539..2518793 Burkholderia ambifaria MC40-6 6176530 YP_001808955.1 CDS BamMC406_2260 NC_010551.1 2518937 2519212 D SMART: helix-turn-helix domain protein; KEGG: bam:Bamb_2380 transcriptional regulator, XRE family; XRE family transcriptional regulator 2518937..2519212 Burkholderia ambifaria MC40-6 6176090 YP_001808956.1 CDS BamMC406_2261 NC_010551.1 2519276 2519752 R KEGG: bam:Bamb_2381 G-T/U mismatch-specific DNA glycosylase-like protein; G-T/U mismatch-specific DNA glycosylase-like protein complement(2519276..2519752) Burkholderia ambifaria MC40-6 6179049 YP_001808957.1 CDS BamMC406_2262 NC_010551.1 2519752 2520345 R PFAM: Chorismate lyase; KEGG: bam:Bamb_2382 chorismate lyase; chorismate lyase complement(2519752..2520345) Burkholderia ambifaria MC40-6 6176486 YP_001808958.1 CDS BamMC406_2263 NC_010551.1 2520342 2522240 R molecular chaperone; heat shock protein 90 complement(2520342..2522240) Burkholderia ambifaria MC40-6 6177383 YP_001808959.1 CDS BamMC406_2264 NC_010551.1 2522563 2522667 D hypothetical protein 2522563..2522667 Burkholderia ambifaria MC40-6 6177123 YP_001808960.1 CDS BamMC406_2265 NC_010551.1 2522655 2523053 D hypothetical protein 2522655..2523053 Burkholderia ambifaria MC40-6 6176594 YP_001808961.1 CDS BamMC406_2266 NC_010551.1 2523149 2524615 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_2384 transcriptional regulator, GntR family; transcriptional regulator complement(2523149..2524615) Burkholderia ambifaria MC40-6 6176444 YP_001808962.1 CDS BamMC406_2267 NC_010551.1 2524846 2525538 D KEGG: bam:Bamb_2385 hypothetical protein; hypothetical protein 2524846..2525538 Burkholderia ambifaria MC40-6 6176110 YP_001808963.1 CDS BamMC406_2268 NC_010551.1 2525603 2526511 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_2386 protein of unknown function DUF6, transmembrane; hypothetical protein 2525603..2526511 Burkholderia ambifaria MC40-6 6176438 YP_001808964.1 CDS BamMC406_2269 NC_010551.1 2526663 2527844 D PFAM: aminotransferase class I and II; KEGG: bam:Bamb_2387 aminotransferase, class I and II; GntR family transcriptional regulator 2526663..2527844 Burkholderia ambifaria MC40-6 6176063 YP_001808965.1 CDS BamMC406_2270 NC_010551.1 2527888 2528346 D PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_2388 endoribonuclease L-PSP; endoribonuclease L-PSP 2527888..2528346 Burkholderia ambifaria MC40-6 6176471 YP_001808966.1 CDS BamMC406_2271 NC_010551.1 2528369 2529250 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: bam:Bamb_2389 phenazine biosynthesis protein PhzF family; PhzF family phenazine biosynthesis protein 2528369..2529250 Burkholderia ambifaria MC40-6 6177357 YP_001808967.1 CDS BamMC406_2272 NC_010551.1 2529477 2531816 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bam:Bamb_2390 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 2529477..2531816 Burkholderia ambifaria MC40-6 6176050 YP_001808968.1 CDS BamMC406_2273 NC_010551.1 2531973 2533244 D PFAM: Chromate transporter; KEGG: bam:Bamb_2391 chromate transporter; chromate transporter 2531973..2533244 Burkholderia ambifaria MC40-6 6176424 YP_001808969.1 CDS BamMC406_2274 NC_010551.1 2533290 2533736 R PFAM: transmembrane pair domain protein; KEGG: bam:Bamb_2392 transmembrane pair domain protein; transmembrane pair domain-containing protein complement(2533290..2533736) Burkholderia ambifaria MC40-6 6177143 YP_001808970.1 CDS BamMC406_2275 NC_010551.1 2533849 2534733 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2393 transcriptional regulator, LysR family; LysR family transcriptional regulator 2533849..2534733 Burkholderia ambifaria MC40-6 6176433 YP_001808971.1 CDS BamMC406_2276 NC_010551.1 2534789 2535247 R KEGG: bam:Bamb_2394 integral membrane protein-like protein; integral membrane protein-like protein complement(2534789..2535247) Burkholderia ambifaria MC40-6 6177052 YP_001808972.1 CDS BamMC406_2277 NC_010551.1 2535493 2537814 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(2535493..2537814) Burkholderia ambifaria MC40-6 6176548 YP_001808973.1 CDS BamMC406_2278 NC_010551.1 2537876 2539858 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(2537876..2539858) Burkholderia ambifaria MC40-6 6176593 YP_001808974.1 CDS BamMC406_2279 NC_010551.1 2540124 2542073 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2397 ABC transporter related; ABC transporter-like protein complement(2540124..2542073) Burkholderia ambifaria MC40-6 6179077 YP_001808975.1 CDS BamMC406_2280 NC_010551.1 2542307 2542711 R KEGG: bam:Bamb_2398 hypothetical protein; hypothetical protein complement(2542307..2542711) Burkholderia ambifaria MC40-6 6176083 YP_001808976.1 CDS BamMC406_2281 NC_010551.1 2542723 2542896 R hypothetical protein complement(2542723..2542896) Burkholderia ambifaria MC40-6 6176634 YP_001808977.1 CDS BamMC406_2282 NC_010551.1 2542909 2543091 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: bam:Bamb_2399 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2542909..2543091 Burkholderia ambifaria MC40-6 6176694 YP_001808978.1 CDS BamMC406_2283 NC_010551.1 2543845 2545896 D KEGG: rpa:RPA4064 hypothetical protein; hypothetical protein 2543845..2545896 Burkholderia ambifaria MC40-6 6176469 YP_001808979.1 CDS BamMC406_2284 NC_010551.1 2546576 2548897 R KEGG: xcv:XCV3716 putative carbohydrate translocase; putative carbohydrate translocase complement(2546576..2548897) Burkholderia ambifaria MC40-6 6179034 YP_001808980.1 CDS BamMC406_2285 NC_010551.1 2548931 2549902 R PFAM: glycosyl transferase family 2; KEGG: mar:MAE_11060 probable glycosyl transferase; glycosyl transferase family protein complement(2548931..2549902) Burkholderia ambifaria MC40-6 6176892 YP_001808981.1 CDS BamMC406_2286 NC_010551.1 2549899 2550300 R PFAM: GtrA family protein; KEGG: mar:MAE_11050 hypothetical protein; GtrA family protein complement(2549899..2550300) Burkholderia ambifaria MC40-6 6176612 YP_001808982.1 CDS BamMC406_2287 NC_010551.1 2550287 2551204 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: mar:MAE_11040 transketolase-like protein; transketolase central region complement(2550287..2551204) Burkholderia ambifaria MC40-6 6176540 YP_001808983.1 CDS BamMC406_2288 NC_010551.1 2551201 2552007 R PFAM: Transketolase domain protein; KEGG: mar:MAE_11030 transketolase-like protein; transketolase domain-containing protein complement(2551201..2552007) Burkholderia ambifaria MC40-6 6177037 YP_001808984.1 CDS BamMC406_2289 NC_010551.1 2552004 2553059 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rpa:RPA4053 possible dTDPglucose 4,6-dehydratase; NAD-dependent epimerase/dehydratase complement(2552004..2553059) Burkholderia ambifaria MC40-6 6176897 YP_001808985.1 CDS BamMC406_2290 NC_010551.1 2553071 2554384 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pol:Bpro_4011 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(2553071..2554384) Burkholderia ambifaria MC40-6 6176674 YP_001808986.1 CDS BamMC406_2291 NC_010551.1 2554400 2555485 R TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: tbd:Tbd_1880 CDP-glucose 4,6-dehydratase; CDP-glucose 4,6-dehydratase complement(2554400..2555485) Burkholderia ambifaria MC40-6 6176928 YP_001808987.1 CDS BamMC406_2292 NC_010551.1 2555467 2556240 R TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4009 nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase complement(2555467..2556240) Burkholderia ambifaria MC40-6 6176417 YP_001808988.1 CDS BamMC406_2293 NC_010551.1 2556873 2557991 R SMART: Parallel beta-helix repeat; KEGG: bam:Bamb_2429 parallel beta-helix repeat; parallel beta-helix repeat-containing protein complement(2556873..2557991) Burkholderia ambifaria MC40-6 6176563 YP_001808989.1 CDS BamMC406_2294 NC_010551.1 2558508 2559248 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_2430 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2558508..2559248) Burkholderia ambifaria MC40-6 6177191 YP_001808990.1 CDS BamMC406_2295 NC_010551.1 2559364 2559978 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_2431 transcriptional regulator, TetR family; TetR family transcriptional regulator 2559364..2559978 Burkholderia ambifaria MC40-6 6177008 YP_001808991.1 CDS BamMC406_2296 NC_010551.1 2560058 2560558 R serine protease inhibitor, inhibits trypsin and other proteases; ecotin complement(2560058..2560558) Burkholderia ambifaria MC40-6 6176603 YP_001808992.1 CDS BamMC406_2297 NC_010551.1 2560703 2561032 D KEGG: bam:Bamb_2433 hypothetical protein; hypothetical protein 2560703..2561032 Burkholderia ambifaria MC40-6 6176830 YP_001808993.1 CDS BamMC406_2298 NC_010551.1 2561244 2561645 R KEGG: bur:Bcep18194_A5715 hypothetical protein; hypothetical protein complement(2561244..2561645) Burkholderia ambifaria MC40-6 6177305 YP_001808994.1 CDS BamMC406_2299 NC_010551.1 2561763 2562143 D KEGG: bam:Bamb_2435 hypothetical protein; hypothetical protein 2561763..2562143 Burkholderia ambifaria MC40-6 6177326 YP_001808995.1 CDS BamMC406_2300 NC_010551.1 2562338 2563705 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2436 major facilitator superfamily MFS_1; major facilitator transporter 2562338..2563705 Burkholderia ambifaria MC40-6 6177276 YP_001808996.1 CDS BamMC406_2301 NC_010551.1 2563731 2564312 R KEGG: bam:Bamb_2437 ATPase-like protein; ATPase-like protein complement(2563731..2564312) Burkholderia ambifaria MC40-6 6176800 YP_001808997.1 CDS BamMC406_2302 NC_010551.1 2564305 2565726 R KEGG: bam:Bamb_2438 alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase complement(2564305..2565726) Burkholderia ambifaria MC40-6 6177006 YP_001808998.1 CDS BamMC406_2303 NC_010551.1 2565877 2566074 R KEGG: bam:Bamb_2439 hypothetical protein; hypothetical protein complement(2565877..2566074) Burkholderia ambifaria MC40-6 6176531 YP_001808999.1 CDS BamMC406_2304 NC_010551.1 2566323 2566913 D KEGG: bam:Bamb_2440 hypothetical protein; hypothetical protein 2566323..2566913 Burkholderia ambifaria MC40-6 6176798 YP_001809000.1 CDS BamMC406_2305 NC_010551.1 2566910 2567404 D KEGG: bam:Bamb_2441 hypothetical protein; hypothetical protein 2566910..2567404 Burkholderia ambifaria MC40-6 6176512 YP_001809001.1 CDS BamMC406_2306 NC_010551.1 2567478 2568815 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2442 ABC transporter related; ABC transporter-like protein complement(2567478..2568815) Burkholderia ambifaria MC40-6 6178055 YP_001809002.1 CDS BamMC406_2307 NC_010551.1 2568838 2570595 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2443 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2568838..2570595) Burkholderia ambifaria MC40-6 6176485 YP_001809003.1 CDS BamMC406_2308 NC_010551.1 2570645 2570983 R hypothetical protein complement(2570645..2570983) Burkholderia ambifaria MC40-6 6176091 YP_001809004.1 CDS BamMC406_2309 NC_010551.1 2571096 2571362 D KEGG: bam:Bamb_2444 hypothetical protein; hypothetical protein 2571096..2571362 Burkholderia ambifaria MC40-6 6177113 YP_001809005.1 CDS BamMC406_2310 NC_010551.1 2571397 2572713 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_2445 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2571397..2572713) Burkholderia ambifaria MC40-6 6176458 YP_001809006.1 CDS BamMC406_2311 NC_010551.1 2572697 2573422 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_2446 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2572697..2573422) Burkholderia ambifaria MC40-6 6176093 YP_001809007.1 CDS BamMC406_2312 NC_010551.1 2573644 2574195 D KEGG: bam:Bamb_2447 hypothetical protein; hypothetical protein 2573644..2574195 Burkholderia ambifaria MC40-6 6179105 YP_001809008.1 CDS BamMC406_2313 NC_010551.1 2574264 2574962 R PFAM: Pirin domain protein; KEGG: bam:Bamb_2448 pirin domain protein domain protein; pirin domain-containing protein complement(2574264..2574962) Burkholderia ambifaria MC40-6 6177115 YP_001809009.1 CDS BamMC406_2314 NC_010551.1 2575326 2576102 D TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_2449 cationic amino acid ABC transporter, periplasmic binding protein; cationic amino acid ABC transporter periplasmic binding protein 2575326..2576102 Burkholderia ambifaria MC40-6 6176684 YP_001809010.1 CDS BamMC406_2315 NC_010551.1 2576332 2577021 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2450 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2576332..2577021 Burkholderia ambifaria MC40-6 6176911 YP_001809011.1 CDS BamMC406_2316 NC_010551.1 2577018 2577731 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2451 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2577018..2577731 Burkholderia ambifaria MC40-6 6176104 YP_001809012.1 CDS BamMC406_2317 NC_010551.1 2577750 2578529 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2452 ABC transporter related; ABC transporter-like protein 2577750..2578529 Burkholderia ambifaria MC40-6 6177418 YP_001809013.1 CDS BamMC406_2318 NC_010551.1 2578585 2579082 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_2453 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2578585..2579082) Burkholderia ambifaria MC40-6 6176765 YP_001809014.1 CDS BamMC406_2319 NC_010551.1 2579216 2580148 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2454 transcriptional regulator, LysR family; LysR family transcriptional regulator 2579216..2580148 Burkholderia ambifaria MC40-6 6176527 YP_001809015.1 CDS BamMC406_2320 NC_010551.1 2580734 2581816 D KEGG: bam:Bamb_2455 outer membrane protein (porin)-like protein; outer membrane protein (porin)-like protein 2580734..2581816 Burkholderia ambifaria MC40-6 6176721 YP_001809016.1 CDS BamMC406_2321 NC_010551.1 2581984 2582322 R PFAM: nitrogen regulatory protein P-II; KEGG: bmu:Bmul_0879 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(2581984..2582322) Burkholderia ambifaria MC40-6 6179111 YP_001809017.1 CDS BamMC406_2322 NC_010551.1 2582406 2584136 R NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(2582406..2584136) Burkholderia ambifaria MC40-6 6176432 YP_001809018.1 CDS BamMC406_2323 NC_010551.1 2584246 2585424 D PFAM: protein of unknown function DUF482; KEGG: bch:Bcen2424_2413 protein of unknown function DUF482; hypothetical protein 2584246..2585424 Burkholderia ambifaria MC40-6 6176942 YP_001809019.1 CDS BamMC406_2324 NC_010551.1 2585458 2587704 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: bam:Bamb_2459 beta-glucosidase; beta-glucosidase complement(2585458..2587704) Burkholderia ambifaria MC40-6 6176060 YP_001809020.1 CDS BamMC406_2325 NC_010551.1 2587854 2588888 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_2460 transcriptional regulator, AraC family; AraC family transcriptional regulator 2587854..2588888 Burkholderia ambifaria MC40-6 6176627 YP_001809021.1 CDS BamMC406_2326 NC_010551.1 2588938 2589813 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: bam:Bamb_2461 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 2588938..2589813 Burkholderia ambifaria MC40-6 6176400 YP_001809022.1 CDS BamMC406_2327 NC_010551.1 2589869 2590396 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(2589869..2590396) Burkholderia ambifaria MC40-6 6178090 YP_001809023.1 CDS BamMC406_2328 NC_010551.1 2590605 2592044 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_2463 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 2590605..2592044 Burkholderia ambifaria MC40-6 6176059 YP_001809024.1 CDS fabG NC_010551.1 2592120 2592878 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2592120..2592878 Burkholderia ambifaria MC40-6 6176082 YP_001809025.1 CDS BamMC406_2330 NC_010551.1 2593023 2594327 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2465 major facilitator superfamily MFS_1; major facilitator transporter 2593023..2594327 Burkholderia ambifaria MC40-6 6176494 YP_001809026.1 CDS BamMC406_2332 NC_010551.1 2594582 2595769 R PFAM: HemY domain protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_2466 HemY domain protein; HemY domain-containing protein complement(2594582..2595769) Burkholderia ambifaria MC40-6 6178116 YP_001809027.1 CDS BamMC406_2333 NC_010551.1 2595772 2597739 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis; bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase complement(2595772..2597739) Burkholderia ambifaria MC40-6 6178218 YP_001809028.1 CDS hemC NC_010551.1 2597739 2598653 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(2597739..2598653) Burkholderia ambifaria MC40-6 6178114 YP_001809029.1 CDS BamMC406_2335 NC_010551.1 2598943 2601939 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 2598943..2601939 Burkholderia ambifaria MC40-6 6178233 YP_001809030.1 CDS BamMC406_2336 NC_010551.1 2602097 2602849 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_2470 methyltransferase type 11; type 11 methyltransferase complement(2602097..2602849) Burkholderia ambifaria MC40-6 6176635 YP_001809031.1 CDS BamMC406_2337 NC_010551.1 2603041 2603850 D SMART: helix-turn-helix domain protein; KEGG: bam:Bamb_2471 transcriptional regulator, XRE family; XRE family transcriptional regulator 2603041..2603850 Burkholderia ambifaria MC40-6 6178014 YP_001809032.1 CDS BamMC406_2338 NC_010551.1 2603857 2604852 R PFAM: Spore coat U domain protein; KEGG: bam:Bamb_2472 spore coat U domain protein; spore coat U domain-containing protein complement(2603857..2604852) Burkholderia ambifaria MC40-6 6178173 YP_001809033.1 CDS BamMC406_2339 NC_010551.1 2605148 2605684 D PFAM: Spore coat U domain protein; KEGG: bam:Bamb_2473 spore coat U domain protein; spore coat U domain-containing protein 2605148..2605684 Burkholderia ambifaria MC40-6 6176637 YP_001809034.1 CDS BamMC406_2340 NC_010551.1 2605691 2606404 D KEGG: bam:Bamb_2474 P pilus assembly protein chaperone PapD-like protein; P pilus assembly protein chaperone PapD-like protein 2605691..2606404 Burkholderia ambifaria MC40-6 6176693 YP_001809035.1 CDS BamMC406_2341 NC_010551.1 2606430 2608880 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_2475 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 2606430..2608880 Burkholderia ambifaria MC40-6 6178245 YP_001809036.1 CDS BamMC406_2342 NC_010551.1 2608990 2610399 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2608990..2610399 Burkholderia ambifaria MC40-6 6176672 YP_001809037.1 CDS BamMC406_2343 NC_010551.1 2610472 2611155 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_2477 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 2610472..2611155 Burkholderia ambifaria MC40-6 6177934 YP_001809038.1 CDS BamMC406_2344 NC_010551.1 2611244 2612074 R KEGG: bam:Bamb_2478 hypothetical protein; hypothetical protein complement(2611244..2612074) Burkholderia ambifaria MC40-6 6176654 YP_001809039.1 CDS BamMC406_2345 NC_010551.1 2612074 2614353 R PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: bam:Bamb_2479 lysine decarboxylase; lysine decarboxylase complement(2612074..2614353) Burkholderia ambifaria MC40-6 6176661 YP_001809040.1 CDS dcd NC_010551.1 2614435 2615004 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2614435..2615004) Burkholderia ambifaria MC40-6 6178197 YP_001809041.1 CDS BamMC406_2347 NC_010551.1 2615200 2615736 R PFAM: superoxide dismutase copper/zinc binding; KEGG: bam:Bamb_2481 superoxide dismutase, copper/zinc binding; Cu-Zn family superoxide dismutase complement(2615200..2615736) Burkholderia ambifaria MC40-6 6176638 YP_001809042.1 CDS BamMC406_2348 NC_010551.1 2615869 2616960 R PFAM: Cobyrinic acid ac-diamide synthase; protein of unknown function DUF59; KEGG: bam:Bamb_2482 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(2615869..2616960) Burkholderia ambifaria MC40-6 6178269 YP_001809043.1 CDS BamMC406_2349 NC_010551.1 2617317 2617964 D PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: bam:Bamb_2483 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2617317..2617964 Burkholderia ambifaria MC40-6 6176747 YP_001809044.1 CDS metG NC_010551.1 2618341 2620503 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2618341..2620503 Burkholderia ambifaria MC40-6 6176707 YP_001809045.1 CDS BamMC406_2351 NC_010551.1 2620597 2621133 D PFAM: transposase IS3/IS911 family protein; KEGG: sme:SMb20826 putative protein, probably encoded by an unidentifed IS element; transposase IS3/IS911 family protein 2620597..2621133 Burkholderia ambifaria MC40-6 6179068 YP_001809046.1 CDS BamMC406_2352 NC_010551.1 2621121 2621957 D PFAM: Integrase catalytic region; KEGG: rme:Rmet_1564 integrase, catalytic region; integrase catalytic subunit 2621121..2621957 Burkholderia ambifaria MC40-6 6178229 YP_001809047.1 CDS BamMC406_2353 NC_010551.1 2622042 2626124 R PFAM: protein of unknown function DUF490; KEGG: bam:Bamb_2485 protein of unknown function DUF490; hypothetical protein complement(2622042..2626124) Burkholderia ambifaria MC40-6 6178375 YP_001809048.1 CDS BamMC406_2354 NC_010551.1 2626153 2627988 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: bam:Bamb_2486 surface antigen (D15); surface antigen (D15) complement(2626153..2627988) Burkholderia ambifaria MC40-6 6176697 YP_001809049.1 CDS BamMC406_2355 NC_010551.1 2628253 2628441 D KEGG: bam:Bamb_2487 hypothetical protein; hypothetical protein 2628253..2628441 Burkholderia ambifaria MC40-6 6178386 YP_001809050.1 CDS BamMC406_2356 NC_010551.1 2628446 2629318 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: bam:Bamb_2488 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 2628446..2629318 Burkholderia ambifaria MC40-6 6176683 YP_001809051.1 CDS panC NC_010551.1 2629588 2630427 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2629588..2630427 Burkholderia ambifaria MC40-6 6178321 YP_001809052.1 CDS BamMC406_2358 NC_010551.1 2630469 2630855 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2630469..2630855 Burkholderia ambifaria MC40-6 6178318 YP_001809053.1 CDS BamMC406_2359 NC_010551.1 2631057 2631716 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bam:Bamb_2491 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(2631057..2631716) Burkholderia ambifaria MC40-6 6178511 YP_001809054.1 CDS BamMC406_2360 NC_010551.1 2631842 2632255 R PFAM: DoxX family protein; KEGG: bam:Bamb_2492 DoxX family protein; DoxX family protein complement(2631842..2632255) Burkholderia ambifaria MC40-6 6178283 YP_001809055.1 CDS BamMC406_2361 NC_010551.1 2632418 2632558 R hypothetical protein complement(2632418..2632558) Burkholderia ambifaria MC40-6 6178455 YP_001809056.1 CDS BamMC406_2362 NC_010551.1 2632643 2634145 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(2632643..2634145) Burkholderia ambifaria MC40-6 6176752 YP_001809057.1 CDS BamMC406_2363 NC_010551.1 2634221 2634781 D PFAM: cobalbumin biosynthesis protein; KEGG: bam:Bamb_2495 adenosylcobinamide kinase; adenosylcobinamide-phosphate guanylyltransferase 2634221..2634781 Burkholderia ambifaria MC40-6 6176767 YP_001809058.1 CDS cobD NC_010551.1 2634775 2635719 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2634775..2635719 Burkholderia ambifaria MC40-6 6178359 YP_001809059.1 CDS BamMC406_2365 NC_010551.1 2635712 2636731 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; putative threonine-phosphate decarboxylase 2635712..2636731 Burkholderia ambifaria MC40-6 6176380 YP_001809060.1 CDS BamMC406_2366 NC_010551.1 2636728 2637654 D PFAM: periplasmic binding protein; KEGG: bam:Bamb_2498 periplasmic binding protein; periplasmic binding protein 2636728..2637654 Burkholderia ambifaria MC40-6 6176780 YP_001809061.1 CDS BamMC406_2367 NC_010551.1 2637711 2638295 R TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: bam:Bamb_2499 phosphoglycerate mutase; alpha-ribazole phosphatase complement(2637711..2638295) Burkholderia ambifaria MC40-6 6178537 YP_001809062.1 CDS cobS NC_010551.1 2638280 2639059 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2638280..2639059) Burkholderia ambifaria MC40-6 6178533 YP_001809063.1 CDS cobT NC_010551.1 2639049 2640161 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2639049..2640161) Burkholderia ambifaria MC40-6 6178605 YP_001809064.1 CDS BamMC406_2370 NC_010551.1 2640158 2640970 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2502 ABC transporter related; ABC transporter-like protein complement(2640158..2640970) Burkholderia ambifaria MC40-6 6178420 YP_001809065.1 CDS BamMC406_2371 NC_010551.1 2640967 2641986 R PFAM: transport system permease protein; KEGG: bam:Bamb_2503 transport system permease protein; transport system permease complement(2640967..2641986) Burkholderia ambifaria MC40-6 6178446 YP_001809066.1 CDS BamMC406_2372 NC_010551.1 2642099 2642809 D KEGG: bpm:BURPS1710b_0726 hypothetical protein; hypothetical protein 2642099..2642809 Burkholderia ambifaria MC40-6 6176814 YP_001809067.1 CDS BamMC406_2373 NC_010551.1 2643233 2643583 D KEGG: bam:Bamb_2505 hypothetical protein; hypothetical protein 2643233..2643583 Burkholderia ambifaria MC40-6 6178460 YP_001809068.1 CDS BamMC406_2374 NC_010551.1 2643580 2643894 D PFAM: protein of unknown function DUF710; KEGG: bam:Bamb_2506 protein of unknown function DUF710; hypothetical protein 2643580..2643894 Burkholderia ambifaria MC40-6 6176820 YP_001809069.1 CDS BamMC406_2375 NC_010551.1 2644265 2644726 D PFAM: protein of unknown function DUF55; KEGG: bam:Bamb_2507 protein of unknown function DUF55; hypothetical protein 2644265..2644726 Burkholderia ambifaria MC40-6 6176849 YP_001809070.1 CDS BamMC406_2376 NC_010551.1 2644936 2645676 D PFAM: protein of unknown function DUF541; KEGG: bam:Bamb_2508 protein of unknown function DUF541; hypothetical protein 2644936..2645676 Burkholderia ambifaria MC40-6 6176847 YP_001809071.1 CDS BamMC406_2377 NC_010551.1 2645842 2646732 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(2645842..2646732) Burkholderia ambifaria MC40-6 6176839 YP_001809072.1 CDS BamMC406_2378 NC_010551.1 2646822 2647739 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2510 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2646822..2647739) Burkholderia ambifaria MC40-6 6176842 YP_001809073.1 CDS BamMC406_2379 NC_010551.1 2647875 2649548 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2647875..2649548 Burkholderia ambifaria MC40-6 6176841 YP_001809074.1 CDS BamMC406_2380 NC_010551.1 2649674 2650003 D PFAM: cytochrome c class I; KEGG: bam:Bamb_2512 cytochrome c, class I; cytochrome c class I 2649674..2650003 Burkholderia ambifaria MC40-6 6176821 YP_001809075.1 CDS BamMC406_2381 NC_010551.1 2650117 2650806 R KEGG: bam:Bamb_2513 hypothetical protein; hypothetical protein complement(2650117..2650806) Burkholderia ambifaria MC40-6 6176831 YP_001809076.1 CDS BamMC406_2382 NC_010551.1 2650832 2651248 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(2650832..2651248) Burkholderia ambifaria MC40-6 6176605 YP_001809077.1 CDS BamMC406_2383 NC_010551.1 2651283 2652794 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(2651283..2652794) Burkholderia ambifaria MC40-6 6178687 YP_001809078.1 CDS BamMC406_2384 NC_010551.1 2652917 2654008 D PFAM: permease YjgP/YjgQ family protein; KEGG: bam:Bamb_2516 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 2652917..2654008 Burkholderia ambifaria MC40-6 6178967 YP_001809079.1 CDS BamMC406_2385 NC_010551.1 2654012 2655160 D PFAM: permease YjgP/YjgQ family protein; KEGG: bam:Bamb_2517 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 2654012..2655160 Burkholderia ambifaria MC40-6 6176873 YP_001809080.1 CDS BamMC406_2386 NC_010551.1 2655186 2655569 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: bam:Bamb_2518 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2655186..2655569 Burkholderia ambifaria MC40-6 6176876 YP_001809081.1 CDS BamMC406_2387 NC_010551.1 2655674 2656423 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(2655674..2656423) Burkholderia ambifaria MC40-6 6176884 YP_001809082.1 CDS BamMC406_2388 NC_010551.1 2656502 2657818 R KEGG: bam:Bamb_2520 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit complement(2656502..2657818) Burkholderia ambifaria MC40-6 6178674 YP_001809083.1 CDS BamMC406_2389 NC_010551.1 2657841 2658803 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(2657841..2658803) Burkholderia ambifaria MC40-6 6177087 YP_001809084.1 CDS BamMC406_2390 NC_010551.1 2658879 2659628 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(2658879..2659628) Burkholderia ambifaria MC40-6 6178702 YP_001809085.1 CDS BamMC406_2391 NC_010551.1 2659625 2660173 R PFAM: conserved hypothetical protein; KEGG: bam:Bamb_2523 uncharacterised conserved protein UCP030820; hypothetical protein complement(2659625..2660173) Burkholderia ambifaria MC40-6 6176972 YP_001809086.1 CDS BamMC406_2392 NC_010551.1 2660199 2661878 R PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bam:Bamb_2524 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; sulfite reductase (ferredoxin) complement(2660199..2661878) Burkholderia ambifaria MC40-6 6176912 YP_001809087.1 CDS BamMC406_2393 NC_010551.1 2662095 2663036 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2525 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein 2662095..2663036 Burkholderia ambifaria MC40-6 6176943 YP_001809088.1 CDS BamMC406_2394 NC_010551.1 2663188 2664345 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_2526 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2663188..2664345 Burkholderia ambifaria MC40-6 6178358 YP_001809089.1 CDS BamMC406_2395 NC_010551.1 2665355 2665912 D KEGG: pfl:PFL_3626 hypothetical protein; hypothetical protein 2665355..2665912 Burkholderia ambifaria MC40-6 6176934 YP_001809090.1 CDS BamMC406_2396 NC_010551.1 2666043 2666441 D hypothetical protein 2666043..2666441 Burkholderia ambifaria MC40-6 6178751 YP_001809091.1 CDS BamMC406_2397 NC_010551.1 2666504 2666629 D hypothetical protein 2666504..2666629 Burkholderia ambifaria MC40-6 6176940 YP_001809092.1 CDS BamMC406_2398 NC_010551.1 2666836 2667738 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2527 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2666836..2667738) Burkholderia ambifaria MC40-6 6177099 YP_001809093.1 CDS BamMC406_2399 NC_010551.1 2667856 2668593 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_2528 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2667856..2668593 Burkholderia ambifaria MC40-6 6176999 YP_001809094.1 CDS BamMC406_2400 NC_010551.1 2668670 2668810 D KEGG: bam:Bamb_2529 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2668670..2668810 Burkholderia ambifaria MC40-6 6177018 YP_001809095.1 CDS BamMC406_2401 NC_010551.1 2668842 2669732 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_2530 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2668842..2669732) Burkholderia ambifaria MC40-6 6177015 YP_001809096.1 CDS BamMC406_2402 NC_010551.1 2669836 2670732 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2531 transcriptional regulator, LysR family; LysR family transcriptional regulator 2669836..2670732 Burkholderia ambifaria MC40-6 6177003 YP_001809097.1 CDS BamMC406_2403 NC_010551.1 2670816 2671745 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2532 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2670816..2671745) Burkholderia ambifaria MC40-6 6176983 YP_001809098.1 CDS BamMC406_2404 NC_010551.1 2671921 2672694 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_2533 short chain dehydrogenase; short chain dehydrogenase complement(2671921..2672694) Burkholderia ambifaria MC40-6 6176990 YP_001809099.1 CDS BamMC406_2405 NC_010551.1 2672982 2673698 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bam:Bamb_2534 pseudouridine synthase, Rsu; pseudouridine synthase 2672982..2673698 Burkholderia ambifaria MC40-6 6176993 YP_001809100.1 CDS BamMC406_2406 NC_010551.1 2673807 2673995 D KEGG: bam:Bamb_2535 hypothetical protein; hypothetical protein 2673807..2673995 Burkholderia ambifaria MC40-6 6176073 YP_001809101.1 CDS BamMC406_2407 NC_010551.1 2673978 2675015 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: bam:Bamb_2536 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2673978..2675015) Burkholderia ambifaria MC40-6 6176946 YP_001809102.1 CDS BamMC406_2408 NC_010551.1 2675122 2676153 D catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 2675122..2676153 Burkholderia ambifaria MC40-6 6176977 YP_001809103.1 CDS argD NC_010551.1 2676447 2677631 D DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 2676447..2677631 Burkholderia ambifaria MC40-6 6176959 YP_001809104.1 CDS BamMC406_2410 NC_010551.1 2677645 2678100 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_2539 putative acetyltransferase; putative acetyltransferase 2677645..2678100 Burkholderia ambifaria MC40-6 6177024 YP_001809105.1 CDS BamMC406_2411 NC_010551.1 2678122 2678793 R KEGG: bam:Bamb_2540 hypothetical protein; hypothetical protein complement(2678122..2678793) Burkholderia ambifaria MC40-6 6177396 YP_001809106.1 CDS BamMC406_2412 NC_010551.1 2679070 2679786 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2541 ABC transporter related; ABC transporter-like protein complement(2679070..2679786) Burkholderia ambifaria MC40-6 6177175 YP_001809107.1 CDS BamMC406_2413 NC_010551.1 2679786 2680562 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2542 ABC transporter related; ABC transporter-like protein complement(2679786..2680562) Burkholderia ambifaria MC40-6 6177185 YP_001809108.1 CDS BamMC406_2414 NC_010551.1 2680587 2681756 R PFAM: inner-membrane translocator; KEGG: bam:Bamb_2543 inner-membrane translocator; inner-membrane translocator complement(2680587..2681756) Burkholderia ambifaria MC40-6 6177058 YP_001809109.1 CDS BamMC406_2415 NC_010551.1 2681776 2682726 R PFAM: inner-membrane translocator; KEGG: bam:Bamb_2544 inner-membrane translocator; inner-membrane translocator complement(2681776..2682726) Burkholderia ambifaria MC40-6 6177118 YP_001809110.1 CDS BamMC406_2416 NC_010551.1 2682938 2683774 R KEGG: bam:Bamb_2545 hypothetical protein; hypothetical protein complement(2682938..2683774) Burkholderia ambifaria MC40-6 6178888 YP_001809111.1 CDS ispH NC_010551.1 2684046 2685026 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(2684046..2685026) Burkholderia ambifaria MC40-6 6177155 YP_001809112.1 CDS BamMC406_2418 NC_010551.1 2685029 2685484 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: bam:Bamb_2547 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(2685029..2685484) Burkholderia ambifaria MC40-6 6177128 YP_001809113.1 CDS radC NC_010551.1 2685620 2686396 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 2685620..2686396 Burkholderia ambifaria MC40-6 6177146 YP_001809114.1 CDS rpmB NC_010551.1 2686634 2686867 D required for 70S ribosome assembly; 50S ribosomal protein L28 2686634..2686867 Burkholderia ambifaria MC40-6 6177032 YP_001809115.1 CDS rpmG NC_010551.1 2686885 2687052 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2686885..2687052 Burkholderia ambifaria MC40-6 6177093 YP_001809116.1 CDS BamMC406_2422 NC_010551.1 2687214 2688800 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2687214..2688800 Burkholderia ambifaria MC40-6 6177031 YP_001809117.1 CDS BamMC406_2423 NC_010551.1 2688895 2689908 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(2688895..2689908) Burkholderia ambifaria MC40-6 6177409 YP_001809118.1 CDS BamMC406_2424 NC_010551.1 2689908 2691044 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2689908..2691044) Burkholderia ambifaria MC40-6 6179109 YP_001809119.1 CDS BamMC406_2425 NC_010551.1 2691283 2692479 R PFAM: fatty acid desaturase; KEGG: bam:Bamb_2554 fatty acid desaturase; fatty acid desaturase complement(2691283..2692479) Burkholderia ambifaria MC40-6 6177334 YP_001809120.1 CDS BamMC406_2426 NC_010551.1 2692714 2694096 R PFAM: MscS Mechanosensitive ion channel; KEGG: bam:Bamb_2555 MscS mechanosensitive ion channel; MscS mechanosensitive ion channel complement(2692714..2694096) Burkholderia ambifaria MC40-6 6177333 YP_001809121.1 CDS BamMC406_2427 NC_010551.1 2694115 2695377 R PFAM: Fmu (Sun) domain protein; KEGG: bam:Bamb_2556 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein complement(2694115..2695377) Burkholderia ambifaria MC40-6 6177332 YP_001809122.1 CDS purN NC_010551.1 2695374 2696036 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(2695374..2696036) Burkholderia ambifaria MC40-6 6177340 YP_001809123.1 CDS BamMC406_2429 NC_010551.1 2696160 2697152 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 2696160..2697152 Burkholderia ambifaria MC40-6 6177384 YP_001809124.1 CDS ileS NC_010551.1 2697255 2700092 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 2697255..2700092 Burkholderia ambifaria MC40-6 6177364 YP_001809125.1 CDS lspA NC_010551.1 2700095 2700595 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2700095..2700595 Burkholderia ambifaria MC40-6 6177350 YP_001809126.1 CDS BamMC406_2432 NC_010551.1 2700663 2701874 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 2700663..2701874 Burkholderia ambifaria MC40-6 6177347 YP_001809127.1 CDS dut NC_010551.1 2701930 2702376 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 2701930..2702376 Burkholderia ambifaria MC40-6 6177431 YP_001809128.1 CDS BamMC406_2434 NC_010551.1 2702431 2703201 R PFAM: protein of unknown function DUF347; KEGG: bch:Bcen2424_2516 protein of unknown function DUF347; hypothetical protein complement(2702431..2703201) Burkholderia ambifaria MC40-6 6177390 YP_001809129.1 CDS BamMC406_2435 NC_010551.1 2703348 2704727 R PFAM: amino acid permease-associated region; KEGG: bam:Bamb_2565 amino acid permease-associated region; amino acid permease-associated protein complement(2703348..2704727) Burkholderia ambifaria MC40-6 6177422 YP_001809130.1 CDS BamMC406_2436 NC_010551.1 2704830 2707130 R KEGG: bam:Bamb_2566 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(2704830..2707130) Burkholderia ambifaria MC40-6 6177324 YP_001809131.1 CDS clpS NC_010551.1 2707127 2707441 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(2707127..2707441) Burkholderia ambifaria MC40-6 6178326 YP_001809132.1 CDS BamMC406_2438 NC_010551.1 2707991 2708194 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bte:BTH_I0761 cold-shock domain family protein-related protein; cold-shock DNA-binding domain-containing protein 2707991..2708194 Burkholderia ambifaria MC40-6 6178272 YP_001809133.1 CDS BamMC406_2439 NC_010551.1 2708442 2710655 R PFAM: YadA domain protein; Hep_Hag repeat-containing protein; KEGG: bte:BTH_II0112 Hep_Hag family; YadA domain-containing protein complement(2708442..2710655) Burkholderia ambifaria MC40-6 6178254 YP_001809134.1 CDS BamMC406_2440 NC_010551.1 2711074 2712672 R PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bam:Bamb_2569 multicopper oxidase, type 3; multicopper oxidase type 3 complement(2711074..2712672) Burkholderia ambifaria MC40-6 6178284 YP_001809135.1 CDS BamMC406_2441 NC_010551.1 2713336 2713560 D KEGG: bam:Bamb_2570 hypothetical protein; hypothetical protein 2713336..2713560 Burkholderia ambifaria MC40-6 6178230 YP_001809136.1 CDS BamMC406_2442 NC_010551.1 2713690 2715918 R KEGG: bam:Bamb_2571 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase complement(2713690..2715918) Burkholderia ambifaria MC40-6 6177181 YP_001809137.1 CDS BamMC406_2443 NC_010551.1 2716201 2717457 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(2716201..2717457) Burkholderia ambifaria MC40-6 6178208 YP_001809138.1 CDS BamMC406_2444 NC_010551.1 2717732 2718310 D PFAM: pseudouridine synthase; KEGG: bam:Bamb_2573 pseudouridine synthase, Rsu; pseudouridine synthase 2717732..2718310 Burkholderia ambifaria MC40-6 6178151 YP_001809139.1 CDS BamMC406_2445 NC_010551.1 2718972 2719472 D PFAM: protein of unknown function DUF192; KEGG: bam:Bamb_2575 protein of unknown function DUF192; hypothetical protein 2718972..2719472 Burkholderia ambifaria MC40-6 6178176 YP_001809140.1 CDS BamMC406_2446 NC_010551.1 2719688 2721799 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2719688..2721799 Burkholderia ambifaria MC40-6 6177312 YP_001809141.1 CDS BamMC406_2447 NC_010551.1 2721973 2722983 D TIGRFAM: high-affinity nickel-transporter; KEGG: bam:Bamb_2577 high-affinity nickel-transporter; high-affinity nickel-transporter 2721973..2722983 Burkholderia ambifaria MC40-6 6179092 YP_001809142.1 CDS BamMC406_2448 NC_010551.1 2723273 2724460 D KEGG: bam:Bamb_2578 hypothetical protein; hypothetical protein 2723273..2724460 Burkholderia ambifaria MC40-6 6177307 YP_001809143.1 CDS BamMC406_2449 NC_010551.1 2724486 2725331 R PFAM: aldo/keto reductase; KEGG: bam:Bamb_2579 aldo/keto reductase; aldo/keto reductase complement(2724486..2725331) Burkholderia ambifaria MC40-6 6178290 YP_001809144.1 CDS BamMC406_2450 NC_010551.1 2725468 2726244 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bam:Bamb_2580 transcriptional regulator, GntR family; GntR family transcriptional regulator 2725468..2726244 Burkholderia ambifaria MC40-6 6178410 YP_001809145.1 CDS BamMC406_2451 NC_010551.1 2726266 2727657 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_2581 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(2726266..2727657) Burkholderia ambifaria MC40-6 6178323 YP_001809146.1 CDS BamMC406_2452 NC_010551.1 2727797 2729029 D PFAM: regulatory protein MerR; Citrate synthase; KEGG: bam:Bamb_2582 citrate synthase; citrate synthase 2727797..2729029 Burkholderia ambifaria MC40-6 6178356 YP_001809147.1 CDS BamMC406_2453 NC_010551.1 2729002 2729325 R KEGG: bam:Bamb_2583 hypothetical protein; hypothetical protein complement(2729002..2729325) Burkholderia ambifaria MC40-6 6178337 YP_001809148.1 CDS BamMC406_2454 NC_010551.1 2729620 2731056 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2584 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 2729620..2731056 Burkholderia ambifaria MC40-6 6178292 YP_001809149.1 CDS BamMC406_2455 NC_010551.1 2731237 2732511 D PFAM: EAL domain protein; KEGG: bam:Bamb_2585 diguanylate phosphodiesterase; diguanylate phosphodiesterase 2731237..2732511 Burkholderia ambifaria MC40-6 6178311 YP_001809150.1 CDS BamMC406_2456 NC_010551.1 2732527 2733141 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_2586 methyltransferase type 11; type 11 methyltransferase complement(2732527..2733141) Burkholderia ambifaria MC40-6 6178115 YP_001809151.1 CDS BamMC406_2457 NC_010551.1 2733234 2734289 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(2733234..2734289) Burkholderia ambifaria MC40-6 6178232 YP_001809152.1 CDS BamMC406_2458 NC_010551.1 2734282 2734806 R PFAM: protein of unknown function DUF962; KEGG: bam:Bamb_2588 protein of unknown function DUF962; hypothetical protein complement(2734282..2734806) Burkholderia ambifaria MC40-6 6178346 YP_001809153.1 CDS BamMC406_2459 NC_010551.1 2734887 2735594 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bam:Bamb_2589 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 2734887..2735594 Burkholderia ambifaria MC40-6 6178296 YP_001809154.1 CDS BamMC406_2460 NC_010551.1 2735756 2736922 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: bam:Bamb_2590 chromate transporter, chromate ion transporter (CHR) family; chromate transporter 2735756..2736922 Burkholderia ambifaria MC40-6 6178330 YP_001809155.1 CDS BamMC406_2461 NC_010551.1 2737032 2737610 R PFAM: manganese and iron superoxide dismutase; KEGG: bam:Bamb_2591 superoxide dismutase; superoxide dismutase complement(2737032..2737610) Burkholderia ambifaria MC40-6 6178266 YP_001809156.1 CDS xseA NC_010551.1 2737851 2739233 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(2737851..2739233) Burkholderia ambifaria MC40-6 6178339 YP_001809157.1 CDS BamMC406_2463 NC_010551.1 2739683 2740711 D Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2739683..2740711 Burkholderia ambifaria MC40-6 6178332 YP_001809158.1 CDS BamMC406_2464 NC_010551.1 2740692 2740895 D PFAM: protein of unknown function DUF343; KEGG: bam:Bamb_2594 protein of unknown function DUF343; hypothetical protein 2740692..2740895 Burkholderia ambifaria MC40-6 6178436 YP_001809159.1 CDS BamMC406_2465 NC_010551.1 2741017 2741808 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2741017..2741808 Burkholderia ambifaria MC40-6 6178404 YP_001809160.1 CDS adk NC_010551.1 2742016 2742678 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2742016..2742678 Burkholderia ambifaria MC40-6 6178442 YP_001809161.1 CDS BamMC406_2467 NC_010551.1 2742857 2743615 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_2597 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2742857..2743615 Burkholderia ambifaria MC40-6 6178430 YP_001809162.1 CDS BamMC406_2468 NC_010551.1 2743692 2744546 R KEGG: bam:Bamb_2598 hypothetical protein; hypothetical protein complement(2743692..2744546) Burkholderia ambifaria MC40-6 6178396 YP_001809163.1 CDS BamMC406_2469 NC_010551.1 2744543 2746093 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: bam:Bamb_2599 integral membrane protein MviN; integral membrane protein MviN complement(2744543..2746093) Burkholderia ambifaria MC40-6 6178395 YP_001809164.1 CDS rpsT NC_010551.1 2746398 2746670 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2746398..2746670 Burkholderia ambifaria MC40-6 6178373 YP_001809165.1 CDS BamMC406_2471 NC_010551.1 2746814 2747134 R KEGG: bvi:Bcep1808_2645 hypothetical protein; hypothetical protein complement(2746814..2747134) Burkholderia ambifaria MC40-6 6178207 YP_001809166.1 CDS BamMC406_2472 NC_010551.1 2747546 2748475 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2747546..2748475 Burkholderia ambifaria MC40-6 6178353 YP_001809167.1 CDS murB NC_010551.1 2748596 2749645 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2748596..2749645) Burkholderia ambifaria MC40-6 6178418 YP_001809168.1 CDS BamMC406_2474 NC_010551.1 2749781 2750266 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 2749781..2750266 Burkholderia ambifaria MC40-6 6178387 YP_001809169.1 CDS BamMC406_2475 NC_010551.1 2750343 2750981 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(2750343..2750981) Burkholderia ambifaria MC40-6 6178447 YP_001809170.1 CDS BamMC406_2476 NC_010551.1 2751146 2751637 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bam:Bamb_2605 YbaK/EbsC protein; ybaK/ebsC protein complement(2751146..2751637) Burkholderia ambifaria MC40-6 6178454 YP_001809171.1 CDS BamMC406_2477 NC_010551.1 2751942 2753504 D PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_2606 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2751942..2753504 Burkholderia ambifaria MC40-6 6178513 YP_001809172.1 CDS xerD NC_010551.1 2753567 2754535 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(2753567..2754535) Burkholderia ambifaria MC40-6 6178363 YP_001809173.1 CDS BamMC406_2479 NC_010551.1 2754532 2755002 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bam:Bamb_2608 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2754532..2755002) Burkholderia ambifaria MC40-6 6178540 YP_001809174.1 CDS BamMC406_2480 NC_010551.1 2755066 2756301 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: bcn:Bcen_1950 4Fe-4S cluster binding; iron-sulfur cluster binding protein complement(2755066..2756301) Burkholderia ambifaria MC40-6 6178462 YP_001809175.1 CDS BamMC406_2481 NC_010551.1 2756319 2756870 D PFAM: protein of unknown function UPF0079; KEGG: bam:Bamb_2610 protein of unknown function UPF0079; hypothetical protein 2756319..2756870 Burkholderia ambifaria MC40-6 6178485 YP_001809176.1 CDS BamMC406_2482 NC_010551.1 2756852 2758399 D PFAM: cell wall hydrolase/autolysin; KEGG: bam:Bamb_2611 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 2756852..2758399 Burkholderia ambifaria MC40-6 6177619 YP_001809177.1 CDS BamMC406_2483 NC_010551.1 2758452 2759333 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_2612 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2758452..2759333) Burkholderia ambifaria MC40-6 6178433 YP_001809178.1 CDS BamMC406_2484 NC_010551.1 2759583 2760464 D PFAM: Pirin domain protein; KEGG: bam:Bamb_2613 pirin domain protein domain protein; pirin domain-containing protein 2759583..2760464 Burkholderia ambifaria MC40-6 6178488 YP_001809179.1 CDS BamMC406_2485 NC_010551.1 2760517 2761365 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bam:Bamb_2614 thioredoxin; thioredoxin 2760517..2761365 Burkholderia ambifaria MC40-6 6178362 YP_001809180.1 CDS BamMC406_2486 NC_010551.1 2761440 2762297 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bam:Bamb_2615 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein complement(2761440..2762297) Burkholderia ambifaria MC40-6 6178474 YP_001809181.1 CDS BamMC406_2487 NC_010551.1 2762425 2763069 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2762425..2763069 Burkholderia ambifaria MC40-6 6178452 YP_001809182.1 CDS BamMC406_2488 NC_010551.1 2763197 2764417 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_2617 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2763197..2764417 Burkholderia ambifaria MC40-6 6178501 YP_001809183.1 CDS BamMC406_2489 NC_010551.1 2764441 2765763 D PFAM: protein of unknown function DUF72; KEGG: bam:Bamb_2618 protein of unknown function DUF72; hypothetical protein 2764441..2765763 Burkholderia ambifaria MC40-6 6178523 YP_001809184.1 CDS BamMC406_2490 NC_010551.1 2766083 2766319 D hypothetical protein 2766083..2766319 Burkholderia ambifaria MC40-6 6178591 YP_001809185.1 CDS BamMC406_2491 NC_010551.1 2766489 2767049 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: bam:Bamb_2619 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase complement(2766489..2767049) Burkholderia ambifaria MC40-6 6178450 YP_001809186.1 CDS BamMC406_2492 NC_010551.1 2767622 2769028 D PFAM: selenium-binding protein; KEGG: bam:Bamb_2621 selenium-binding protein; selenium-binding protein 2767622..2769028 Burkholderia ambifaria MC40-6 6178586 YP_001809187.1 CDS BamMC406_2493 NC_010551.1 2769025 2769690 D KEGG: bam:Bamb_2622 hypothetical protein; hypothetical protein 2769025..2769690 Burkholderia ambifaria MC40-6 6178555 YP_001809188.1 CDS BamMC406_2494 NC_010551.1 2769976 2770485 D PFAM: flavin reductase domain protein FMN-binding; KEGG: bam:Bamb_2623 flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 2769976..2770485 Burkholderia ambifaria MC40-6 6178547 YP_001809189.1 CDS BamMC406_2495 NC_010551.1 2770472 2770972 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_2624 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2770472..2770972) Burkholderia ambifaria MC40-6 6178581 YP_001809190.1 CDS BamMC406_2496 NC_010551.1 2771103 2771744 D TIGRFAM: arylformamidase; PFAM: cyclase family protein; KEGG: bam:Bamb_2625 cyclase family protein; arylformamidase 2771103..2771744 Burkholderia ambifaria MC40-6 6178576 YP_001809191.1 CDS BamMC406_2497 NC_010551.1 2771770 2773023 D TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: bam:Bamb_2626 kynureninase; kynureninase 2771770..2773023 Burkholderia ambifaria MC40-6 6178508 YP_001809192.1 CDS BamMC406_2498 NC_010551.1 2773101 2774042 D TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: bam:Bamb_2627 tryptophan 2,3-dioxygenase; tryptophan 2,3-dioxygenase 2773101..2774042 Burkholderia ambifaria MC40-6 6178500 YP_001809193.1 CDS BamMC406_2499 NC_010551.1 2774064 2775461 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_2628 major facilitator superfamily MFS_1; major facilitator transporter complement(2774064..2775461) Burkholderia ambifaria MC40-6 6178546 YP_001809194.1 CDS BamMC406_2500 NC_010551.1 2775722 2776666 R KEGG: bam:Bamb_2629 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase complement(2775722..2776666) Burkholderia ambifaria MC40-6 6178469 YP_001809195.1 CDS BamMC406_2501 NC_010551.1 2776680 2778131 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_2630 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2776680..2778131) Burkholderia ambifaria MC40-6 6178593 YP_001809196.1 CDS BamMC406_2502 NC_010551.1 2778161 2779768 R catalyzes the formation of benzaldehyde from benzoylformate; benzoylformate decarboxylase complement(2778161..2779768) Burkholderia ambifaria MC40-6 6178664 YP_001809197.1 CDS BamMC406_2503 NC_010551.1 2779868 2780788 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2632 transcriptional regulator, LysR family; LysR family transcriptional regulator 2779868..2780788 Burkholderia ambifaria MC40-6 6178651 YP_001809198.1 CDS BamMC406_2504 NC_010551.1 2780963 2782357 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: bam:Bamb_2633 mannitol dehydrogenase, C-terminal domain; mannitol dehydrogenase domain-containing protein 2780963..2782357 Burkholderia ambifaria MC40-6 6178566 YP_001809199.1 CDS BamMC406_2505 NC_010551.1 2782490 2783971 D TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bam:Bamb_2634 xylulokinase; xylulokinase 2782490..2783971 Burkholderia ambifaria MC40-6 6178636 YP_001809200.1 CDS BamMC406_2506 NC_010551.1 2784004 2785041 D PFAM: putative sugar-binding domain protein; KEGG: bam:Bamb_2635 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 2784004..2785041 Burkholderia ambifaria MC40-6 6178647 YP_001809201.1 CDS BamMC406_2507 NC_010551.1 2785179 2786288 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_2639 ABC transporter related; ABC transporter-like protein complement(2785179..2786288) Burkholderia ambifaria MC40-6 6178600 YP_001809202.1 CDS BamMC406_2508 NC_010551.1 2786356 2787069 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_2640 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase complement(2786356..2787069) Burkholderia ambifaria MC40-6 6178634 YP_001809203.1 CDS BamMC406_2509 NC_010551.1 2787066 2787917 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2641 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2787066..2787917) Burkholderia ambifaria MC40-6 6178640 YP_001809204.1 CDS BamMC406_2510 NC_010551.1 2787914 2788861 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2642 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2787914..2788861) Burkholderia ambifaria MC40-6 6178615 YP_001809205.1 CDS BamMC406_2511 NC_010551.1 2788964 2790289 R PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_2643 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(2788964..2790289) Burkholderia ambifaria MC40-6 6178569 YP_001809206.1 CDS BamMC406_2512 NC_010551.1 2790402 2791760 R KEGG: bam:Bamb_2644 tagatose-6-phosphate kinase; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit complement(2790402..2791760) Burkholderia ambifaria MC40-6 6178619 YP_001809207.1 CDS BamMC406_2513 NC_010551.1 2791748 2792707 R PFAM: PfkB domain protein; KEGG: bam:Bamb_2645 PfkB domain protein; ribokinase-like domain-containing protein complement(2791748..2792707) Burkholderia ambifaria MC40-6 6178601 YP_001809208.1 CDS BamMC406_2514 NC_010551.1 2792777 2793553 R Converts D-sorbitol to L-sorbose; sorbitol dehydrogenase complement(2792777..2793553) Burkholderia ambifaria MC40-6 6178677 YP_001809209.1 CDS BamMC406_2515 NC_010551.1 2793688 2794344 D PFAM: ferric-uptake regulator; KEGG: bam:Bamb_2647 ferric uptake regulator, Fur family; ferric uptake regulator family protein 2793688..2794344 Burkholderia ambifaria MC40-6 6178735 YP_001809210.1 CDS BamMC406_2516 NC_010551.1 2794394 2795308 D PFAM: periplasmic solute binding protein; KEGG: bam:Bamb_2648 periplasmic solute binding protein; periplasmic solute binding protein 2794394..2795308 Burkholderia ambifaria MC40-6 6178628 YP_001809211.1 CDS BamMC406_2517 NC_010551.1 2795322 2796212 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2649 ABC transporter related; ABC transporter-like protein 2795322..2796212 Burkholderia ambifaria MC40-6 6178698 YP_001809212.1 CDS BamMC406_2518 NC_010551.1 2796205 2796993 D PFAM: ABC-3 protein; KEGG: bam:Bamb_2650 ABC-3 protein; ABC-3 protein 2796205..2796993 Burkholderia ambifaria MC40-6 6178728 YP_001809213.1 CDS BamMC406_2519 NC_010551.1 2797043 2797378 R KEGG: bmu:Bmul_4214 hypothetical protein; hypothetical protein complement(2797043..2797378) Burkholderia ambifaria MC40-6 6178679 YP_001809214.1 CDS BamMC406_2520 NC_010551.1 2797728 2798024 R KEGG: aav:Aave_3470 hypothetical protein; hypothetical protein complement(2797728..2798024) Burkholderia ambifaria MC40-6 6178694 YP_001809215.1 CDS BamMC406_2521 NC_010551.1 2798042 2798701 R KEGG: aav:Aave_3471 hypothetical protein; hypothetical protein complement(2798042..2798701) Burkholderia ambifaria MC40-6 6178701 YP_001809216.1 CDS BamMC406_2523 NC_010551.1 2800002 2800280 D hypothetical protein 2800002..2800280 Burkholderia ambifaria MC40-6 6178712 YP_001809217.1 CDS BamMC406_2524 NC_010551.1 2800309 2801157 R KEGG: bam:Bamb_2651 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase complement(2800309..2801157) Burkholderia ambifaria MC40-6 6178468 YP_001809218.1 CDS BamMC406_2525 NC_010551.1 2801404 2802915 R PFAM: carbohydrate kinase FGGY; KEGG: bam:Bamb_2652 carbohydrate kinase, FGGY; carbohydrate kinase FGGY complement(2801404..2802915) Burkholderia ambifaria MC40-6 6178666 YP_001809219.1 CDS BamMC406_2526 NC_010551.1 2803363 2804739 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bam:Bamb_2653 uracil-xanthine permease; xanthine permease 2803363..2804739 Burkholderia ambifaria MC40-6 6178584 YP_001809220.1 CDS BamMC406_2527 NC_010551.1 2804984 2806507 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_2654 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(2804984..2806507) Burkholderia ambifaria MC40-6 6178552 YP_001809221.1 CDS BamMC406_2528 NC_010551.1 2806507 2809707 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bam:Bamb_2655 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2806507..2809707) Burkholderia ambifaria MC40-6 6178828 YP_001809222.1 CDS BamMC406_2529 NC_010551.1 2809723 2811021 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_2656 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2809723..2811021) Burkholderia ambifaria MC40-6 6178791 YP_001809223.1 CDS BamMC406_2530 NC_010551.1 2811418 2812059 D PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: bam:Bamb_2657 transcriptional regulator, TetR family; TetR family transcriptional regulator 2811418..2812059 Burkholderia ambifaria MC40-6 6178656 YP_001809224.1 CDS BamMC406_2531 NC_010551.1 2812175 2812897 R PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_2658 isochorismatase hydrolase; isochorismatase hydrolase complement(2812175..2812897) Burkholderia ambifaria MC40-6 6178667 YP_001809225.1 CDS BamMC406_2532 NC_010551.1 2812981 2813982 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_2659 transcriptional regulator, AraC family; AraC family transcriptional regulator 2812981..2813982 Burkholderia ambifaria MC40-6 6178757 YP_001809226.1 CDS BamMC406_2533 NC_010551.1 2814039 2814746 R PFAM: carbon monoxide dehydrogenase subunit G; KEGG: bam:Bamb_2660 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G complement(2814039..2814746) Burkholderia ambifaria MC40-6 6178632 YP_001809227.1 CDS BamMC406_2534 NC_010551.1 2814775 2815134 R PFAM: protein of unknown function DUF427; KEGG: bam:Bamb_2661 protein of unknown function DUF427; hypothetical protein complement(2814775..2815134) Burkholderia ambifaria MC40-6 6178781 YP_001809228.1 CDS BamMC406_2535 NC_010551.1 2815271 2815717 R KEGG: bam:Bamb_2662 hypothetical protein; hypothetical protein complement(2815271..2815717) Burkholderia ambifaria MC40-6 6178754 YP_001809229.1 CDS BamMC406_2536 NC_010551.1 2815812 2817296 R KEGG: bam:Bamb_2663 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(2815812..2817296) Burkholderia ambifaria MC40-6 6178778 YP_001809230.1 CDS BamMC406_2537 NC_010551.1 2817440 2818777 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_2664 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2817440..2818777) Burkholderia ambifaria MC40-6 6178650 YP_001809231.1 CDS BamMC406_2538 NC_010551.1 2818781 2819413 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_2665 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2818781..2819413) Burkholderia ambifaria MC40-6 6178740 YP_001809232.1 CDS BamMC406_2539 NC_010551.1 2819547 2821169 D KEGG: bam:Bamb_2666 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2819547..2821169 Burkholderia ambifaria MC40-6 6178562 YP_001809233.1 CDS BamMC406_2540 NC_010551.1 2821416 2822330 D PFAM: fatty acid hydroxylase; KEGG: bam:Bamb_2667 sterol desaturase-like protein; fatty acid hydroxylase 2821416..2822330 Burkholderia ambifaria MC40-6 6178771 YP_001809234.1 CDS BamMC406_2541 NC_010551.1 2822426 2823562 D KEGG: bam:Bamb_2668 phospholipase/lecithinase/hemolysin-like protein; phospholipase/lecithinase/hemolysin-like protein 2822426..2823562 Burkholderia ambifaria MC40-6 6178849 YP_001809235.1 CDS BamMC406_2542 NC_010551.1 2823652 2824680 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: bam:Bamb_2669 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(2823652..2824680) Burkholderia ambifaria MC40-6 6178739 YP_001809236.1 CDS BamMC406_2543 NC_010551.1 2824692 2825888 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(2824692..2825888) Burkholderia ambifaria MC40-6 6178840 YP_001809237.1 CDS BamMC406_2544 NC_010551.1 2825977 2826498 R KEGG: bvi:Bcep1808_2739 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(2825977..2826498) Burkholderia ambifaria MC40-6 6178845 YP_001809238.1 CDS BamMC406_2545 NC_010551.1 2826515 2827405 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2826515..2827405) Burkholderia ambifaria MC40-6 6178784 YP_001809239.1 CDS BamMC406_2546 NC_010551.1 2827626 2828690 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(2827626..2828690) Burkholderia ambifaria MC40-6 6176521 YP_001809240.1 CDS BamMC406_2547 NC_010551.1 2828963 2830399 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(2828963..2830399) Burkholderia ambifaria MC40-6 6178801 YP_001809241.1 CDS pgk NC_010551.1 2830684 2832030 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(2830684..2832030) Burkholderia ambifaria MC40-6 6178839 YP_001809242.1 CDS BamMC406_2549 NC_010551.1 2832161 2832484 R PFAM: branched-chain amino acid transport; KEGG: bam:Bamb_2676 branched-chain amino acid transport; branched-chain amino acid transport complement(2832161..2832484) Burkholderia ambifaria MC40-6 6178803 YP_001809243.1 CDS BamMC406_2550 NC_010551.1 2832481 2833236 R PFAM: AzlC family protein; KEGG: bam:Bamb_2677 AzlC family protein; AzlC family protein complement(2832481..2833236) Burkholderia ambifaria MC40-6 6178782 YP_001809244.1 CDS BamMC406_2551 NC_010551.1 2833445 2834368 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2833445..2834368 Burkholderia ambifaria MC40-6 6178829 YP_001809245.1 CDS BamMC406_2552 NC_010551.1 2834419 2834613 D KEGG: bam:Bamb_2679 hypothetical protein; hypothetical protein 2834419..2834613 Burkholderia ambifaria MC40-6 6178793 YP_001809246.1 CDS BamMC406_2553 NC_010551.1 2834751 2835788 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: bmu:Bmul_0665 lipopolysaccharide heptosyltransferase II; lipopolysaccharide heptosyltransferase II 2834751..2835788 Burkholderia ambifaria MC40-6 6178872 YP_001809247.1 CDS BamMC406_2554 NC_010551.1 2835905 2836351 D KEGG: bam:Bamb_2681 hypothetical protein; hypothetical protein 2835905..2836351 Burkholderia ambifaria MC40-6 6178946 YP_001809248.1 CDS BamMC406_2555 NC_010551.1 2836385 2837422 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_2682 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2836385..2837422 Burkholderia ambifaria MC40-6 6178894 YP_001809249.1 CDS BamMC406_2556 NC_010551.1 2837415 2838032 D KEGG: bam:Bamb_2683 hypothetical protein; hypothetical protein 2837415..2838032 Burkholderia ambifaria MC40-6 6178879 YP_001809250.1 CDS BamMC406_2557 NC_010551.1 2838063 2839757 R PFAM: peptidase M48 Ste24p; KEGG: bam:Bamb_2684 peptidase M48, Ste24p; peptidase M48 Ste24p complement(2838063..2839757) Burkholderia ambifaria MC40-6 6178899 YP_001809251.1 CDS moaC NC_010551.1 2839998 2840486 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2839998..2840486 Burkholderia ambifaria MC40-6 6178892 YP_001809252.1 CDS BamMC406_2559 NC_010551.1 2840602 2843289 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bam:Bamb_2686 rhs element Vgr protein; ImpA family type VI secretion-associated protein 2840602..2843289 Burkholderia ambifaria MC40-6 6178880 YP_001809253.1 CDS BamMC406_2560 NC_010551.1 2843282 2844151 D KEGG: bam:Bamb_2687 hypothetical protein; hypothetical protein 2843282..2844151 Burkholderia ambifaria MC40-6 6178885 YP_001809254.1 CDS BamMC406_2561 NC_010551.1 2844231 2845382 D PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: bam:Bamb_2688 glycosyl hydrolase, BNR repeat-containing protein; glycosyl hydrolase BNR repeat-containing glycosyl hydrolase 2844231..2845382 Burkholderia ambifaria MC40-6 6178815 YP_001809255.1 CDS BamMC406_2562 NC_010551.1 2845446 2846723 D KEGG: bam:Bamb_2689 hypothetical protein; hypothetical protein 2845446..2846723 Burkholderia ambifaria MC40-6 6177921 YP_001809256.1 CDS BamMC406_2563 NC_010551.1 2846755 2847963 D KEGG: bam:Bamb_2690 hypothetical protein; hypothetical protein 2846755..2847963 Burkholderia ambifaria MC40-6 6178853 YP_001809257.1 CDS BamMC406_2564 NC_010551.1 2848039 2848389 R TIGRFAM: TonB family protein; KEGG: bam:Bamb_2691 TonB family protein; TonB family protein complement(2848039..2848389) Burkholderia ambifaria MC40-6 6178858 YP_001809258.1 CDS BamMC406_2565 NC_010551.1 2848550 2848720 R hypothetical protein complement(2848550..2848720) Burkholderia ambifaria MC40-6 6178916 YP_001809259.1 CDS BamMC406_2566 NC_010551.1 2848805 2850583 R PFAM: O-antigen polymerase; KEGG: bam:Bamb_2692 O-antigen polymerase; O-antigen polymerase complement(2848805..2850583) Burkholderia ambifaria MC40-6 6179007 YP_001809260.1 CDS BamMC406_2567 NC_010551.1 2850746 2851342 R KEGG: bam:Bamb_2693 general secretion pathway protein H; general secretion pathway protein H complement(2850746..2851342) Burkholderia ambifaria MC40-6 6178909 YP_001809261.1 CDS BamMC406_2568 NC_010551.1 2851440 2852144 R PFAM: Integral membrane protein TerC; KEGG: bam:Bamb_2694 integral membrane protein TerC; integral membrane protein TerC complement(2851440..2852144) Burkholderia ambifaria MC40-6 6178960 YP_001809262.1 CDS BamMC406_2569 NC_010551.1 2852302 2853183 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(2852302..2853183) Burkholderia ambifaria MC40-6 6178985 YP_001809263.1 CDS sucC NC_010551.1 2853253 2854419 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(2853253..2854419) Burkholderia ambifaria MC40-6 6178949 YP_001809264.1 CDS BamMC406_2571 NC_010551.1 2854488 2855096 R KEGG: bam:Bamb_2697 hypothetical protein; hypothetical protein complement(2854488..2855096) Burkholderia ambifaria MC40-6 6178875 YP_001809265.1 CDS recX NC_010551.1 2855242 2856123 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2855242..2856123) Burkholderia ambifaria MC40-6 6178957 YP_001809266.1 CDS recA NC_010551.1 2856123 2857202 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2856123..2857202) Burkholderia ambifaria MC40-6 6178962 YP_001809267.1 CDS BamMC406_2574 NC_010551.1 2857390 2858118 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_2700 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2857390..2858118 Burkholderia ambifaria MC40-6 6178943 YP_001809268.1 CDS BamMC406_2575 NC_010551.1 2858135 2859694 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: bam:Bamb_2701 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2858135..2859694 Burkholderia ambifaria MC40-6 6178920 YP_001809269.1 CDS BamMC406_2576 NC_010551.1 2859930 2861588 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_2702 major facilitator superfamily MFS_1; general substrate transporter 2859930..2861588 Burkholderia ambifaria MC40-6 6178955 YP_001809270.1 CDS BamMC406_2577 NC_010551.1 2861893 2862864 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2703 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2861893..2862864) Burkholderia ambifaria MC40-6 6178989 YP_001809271.1 CDS BamMC406_2578 NC_010551.1 2863063 2864031 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_2704 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2863063..2864031) Burkholderia ambifaria MC40-6 6178980 YP_001809272.1 CDS BamMC406_2579 NC_010551.1 2864146 2864829 D PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_2705 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 2864146..2864829 Burkholderia ambifaria MC40-6 6176266 YP_001809273.1 CDS BamMC406_2580 NC_010551.1 2864912 2865223 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_2706 cupin 2, conserved barrel domain protein; cupin 2864912..2865223 Burkholderia ambifaria MC40-6 6176025 YP_001809274.1 CDS BamMC406_2581 NC_010551.1 2865267 2865551 R KEGG: bam:Bamb_2707 hypothetical protein; hypothetical protein complement(2865267..2865551) Burkholderia ambifaria MC40-6 6179066 YP_001809275.1 CDS BamMC406_2582 NC_010551.1 2865679 2866881 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_2708 porin, gram-negative type; porin complement(2865679..2866881) Burkholderia ambifaria MC40-6 6177678 YP_001809276.1 CDS BamMC406_2583 NC_010551.1 2866995 2868467 R PFAM: Amidase; KEGG: bam:Bamb_2709 amidase; amidase complement(2866995..2868467) Burkholderia ambifaria MC40-6 6179043 YP_001809277.1 CDS BamMC406_2584 NC_010551.1 2868500 2869816 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_2710 major facilitator superfamily MFS_1; major facilitator transporter complement(2868500..2869816) Burkholderia ambifaria MC40-6 6179050 YP_001809278.1 CDS BamMC406_2585 NC_010551.1 2870027 2870947 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2711 transcriptional regulator, LysR family; LysR family transcriptional regulator 2870027..2870947 Burkholderia ambifaria MC40-6 6178977 YP_001809279.1 CDS BamMC406_2586 NC_010551.1 2871236 2872123 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2712 transcriptional regulator, LysR family; LysR family transcriptional regulator 2871236..2872123 Burkholderia ambifaria MC40-6 6179001 YP_001809280.1 CDS BamMC406_2587 NC_010551.1 2872369 2875476 D PFAM: glycosyl transferase family 51; KEGG: bam:Bamb_2715 glycosyl transferase, family 51; glycosyl transferase family protein 2872369..2875476 Burkholderia ambifaria MC40-6 6178971 YP_001809281.1 CDS BamMC406_2588 NC_010551.1 2875511 2875858 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bam:Bamb_2716 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(2875511..2875858) Burkholderia ambifaria MC40-6 6178979 YP_001809282.1 CDS BamMC406_2589 NC_010551.1 2876012 2876257 D PFAM: protein of unknown function DUF1272; KEGG: bam:Bamb_2717 protein of unknown function DUF1272; hypothetical protein 2876012..2876257 Burkholderia ambifaria MC40-6 6176016 YP_001809283.1 CDS BamMC406_2590 NC_010551.1 2876285 2876989 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_2718 GntR domain protein; GntR family transcriptional regulator complement(2876285..2876989) Burkholderia ambifaria MC40-6 6176308 YP_001809284.1 CDS BamMC406_2591 NC_010551.1 2877123 2878271 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_2719 mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; galactonate dehydratase 2877123..2878271 Burkholderia ambifaria MC40-6 6176352 YP_001809285.1 CDS BamMC406_2592 NC_010551.1 2878419 2879351 R PFAM: copper resistance D domain protein; KEGG: bam:Bamb_2720 copper resistance D domain protein; copper resistance D domain-containing protein complement(2878419..2879351) Burkholderia ambifaria MC40-6 6176143 YP_001809286.1 CDS BamMC406_2593 NC_010551.1 2879804 2880493 D KEGG: bam:Bamb_2721 cytochrome c, class I; cytochrome c, class I 2879804..2880493 Burkholderia ambifaria MC40-6 6176161 YP_001809287.1 CDS BamMC406_2594 NC_010551.1 2880513 2881811 D PFAM: cytochrome c class I; KEGG: bam:Bamb_2722 cytochrome c, class I; gluconate 2-dehydrogenase (acceptor) 2880513..2881811 Burkholderia ambifaria MC40-6 6176281 YP_001809288.1 CDS BamMC406_2595 NC_010551.1 2881941 2883380 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bam:Bamb_2723 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2881941..2883380 Burkholderia ambifaria MC40-6 6176257 YP_001809289.1 CDS BamMC406_2596 NC_010551.1 2883374 2883925 R KEGG: bam:Bamb_2724 hypothetical protein; hypothetical protein complement(2883374..2883925) Burkholderia ambifaria MC40-6 6176162 YP_001809290.1 CDS BamMC406_2597 NC_010551.1 2883950 2884777 R KEGG: bam:Bamb_2725 hypothetical protein; hypothetical protein complement(2883950..2884777) Burkholderia ambifaria MC40-6 6176273 YP_001809291.1 CDS BamMC406_2598 NC_010551.1 2885092 2886732 R PFAM: gamma-glutamyltranspeptidase; KEGG: bam:Bamb_2726 gamma-glutamyltransferase; gamma-glutamyltransferase complement(2885092..2886732) Burkholderia ambifaria MC40-6 6176267 YP_001809292.1 CDS BamMC406_2599 NC_010551.1 2886957 2887736 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: bam:Bamb_2727 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 2886957..2887736 Burkholderia ambifaria MC40-6 6175955 YP_001809293.1 CDS BamMC406_2600 NC_010551.1 2888042 2888239 D KEGG: bam:Bamb_2728 hypothetical protein; hypothetical protein 2888042..2888239 Burkholderia ambifaria MC40-6 6175950 YP_001809294.1 CDS BamMC406_2601 NC_010551.1 2888329 2888697 R KEGG: bam:Bamb_2729 hypothetical protein; hypothetical protein complement(2888329..2888697) Burkholderia ambifaria MC40-6 6176129 YP_001809295.1 CDS glpD NC_010551.1 2888860 2890383 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 2888860..2890383 Burkholderia ambifaria MC40-6 6176269 YP_001809296.1 CDS glpK NC_010551.1 2890489 2891991 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 2890489..2891991 Burkholderia ambifaria MC40-6 6176136 YP_001809297.1 CDS BamMC406_2604 NC_010551.1 2892076 2892792 D TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: bam:Bamb_2732 MIP family channel proteins; MIP family channel protein 2892076..2892792 Burkholderia ambifaria MC40-6 6175962 YP_001809298.1 CDS BamMC406_2605 NC_010551.1 2892970 2893692 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_2741 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 2892970..2893692 Burkholderia ambifaria MC40-6 6176158 YP_001809299.1 CDS BamMC406_2606 NC_010551.1 2893783 2894493 R TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: bam:Bamb_2742 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2893783..2894493) Burkholderia ambifaria MC40-6 6175958 YP_001809300.1 CDS BamMC406_2607 NC_010551.1 2894949 2895632 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_2743 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2894949..2895632) Burkholderia ambifaria MC40-6 6176138 YP_001809301.1 CDS BamMC406_2608 NC_010551.1 2895834 2897009 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2744 major facilitator superfamily MFS_1; major facilitator transporter complement(2895834..2897009) Burkholderia ambifaria MC40-6 6175964 YP_001809302.1 CDS BamMC406_2609 NC_010551.1 2897157 2898089 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2745 transcriptional regulator, LysR family; LysR family transcriptional regulator 2897157..2898089 Burkholderia ambifaria MC40-6 6175986 YP_001809303.1 CDS BamMC406_2610 NC_010551.1 2898370 2899743 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 2898370..2899743 Burkholderia ambifaria MC40-6 6176210 YP_001809304.1 CDS BamMC406_2611 NC_010551.1 2899777 2900823 D PFAM: PhoH family protein; KEGG: bam:Bamb_2747 PhoH family protein; PhoH family protein 2899777..2900823 Burkholderia ambifaria MC40-6 6176175 YP_001809305.1 CDS BamMC406_2612 NC_010551.1 2900945 2901730 D contains unknown N-terminal domain/putative metalloprotease C-terminal domain; unkown domain/putative metalloprotease fusion protein 2900945..2901730 Burkholderia ambifaria MC40-6 6176015 YP_001809306.1 CDS BamMC406_2613 NC_010551.1 2901760 2902377 D PFAM: ChaC family protein; AIG2 family protein; KEGG: bam:Bamb_2749 ChaC family protein; ChaC family protein 2901760..2902377 Burkholderia ambifaria MC40-6 6175963 YP_001809307.1 CDS BamMC406_2614 NC_010551.1 2902434 2902583 D hypothetical protein 2902434..2902583 Burkholderia ambifaria MC40-6 6176027 YP_001809308.1 CDS BamMC406_2615 NC_010551.1 2902883 2903770 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: bam:Bamb_2750 transporter-associated region; transporter-associated protein 2902883..2903770 Burkholderia ambifaria MC40-6 6176208 YP_001809309.1 CDS lnt NC_010551.1 2903822 2905510 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 2903822..2905510 Burkholderia ambifaria MC40-6 6176261 YP_001809310.1 CDS BamMC406_2617 NC_010551.1 2905527 2907164 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_2752 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(2905527..2907164) Burkholderia ambifaria MC40-6 6176357 YP_001809311.1 CDS glyQ NC_010551.1 2907510 2908514 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2907510..2908514 Burkholderia ambifaria MC40-6 6176148 YP_001809312.1 CDS glyS NC_010551.1 2908537 2910636 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 2908537..2910636 Burkholderia ambifaria MC40-6 6176258 YP_001809313.1 CDS BamMC406_2620 NC_010551.1 2910647 2911210 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 2910647..2911210 Burkholderia ambifaria MC40-6 6176012 YP_001809314.1 CDS BamMC406_2621 NC_010551.1 2911254 2912018 D PFAM: phospholipid/glycerol acyltransferase; KEGG: bam:Bamb_2756 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2911254..2912018 Burkholderia ambifaria MC40-6 6176249 YP_001809315.1 CDS BamMC406_2622 NC_010551.1 2912119 2912976 D PFAM: protein of unknown function DUF45; KEGG: bam:Bamb_2757 protein of unknown function DUF45; hypothetical protein 2912119..2912976 Burkholderia ambifaria MC40-6 6176036 YP_001809316.1 CDS BamMC406_2623 NC_010551.1 2913085 2913474 R KEGG: bam:Bamb_2758 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(2913085..2913474) Burkholderia ambifaria MC40-6 6176373 YP_001809317.1 CDS BamMC406_2624 NC_010551.1 2913802 2914221 D KEGG: bam:Bamb_5681 hypothetical protein; hypothetical protein 2913802..2914221 Burkholderia ambifaria MC40-6 6176202 YP_001809318.1 CDS BamMC406_2625 NC_010551.1 2914234 2914587 D KEGG: bam:Bamb_4583 hypothetical protein; hypothetical protein 2914234..2914587 Burkholderia ambifaria MC40-6 6175985 YP_001809319.1 CDS ksgA NC_010551.1 2914584 2915405 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(2914584..2915405) Burkholderia ambifaria MC40-6 6176146 YP_001809320.1 CDS pdxA NC_010551.1 2915461 2916450 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(2915461..2916450) Burkholderia ambifaria MC40-6 6176358 YP_001809321.1 CDS BamMC406_2628 NC_010551.1 2916462 2917820 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: bam:Bamb_2762 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein complement(2916462..2917820) Burkholderia ambifaria MC40-6 6176150 YP_001809322.1 CDS BamMC406_2629 NC_010551.1 2917872 2920232 R PFAM: Organic solvent tolerance protein; KEGG: bam:Bamb_2763 organic solvent tolerance protein; organic solvent tolerance protein complement(2917872..2920232) Burkholderia ambifaria MC40-6 6176004 YP_001809323.1 CDS BamMC406_2630 NC_010551.1 2920458 2921507 D PFAM: aminoglycoside phosphotransferase; KEGG: bam:Bamb_2764 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2920458..2921507 Burkholderia ambifaria MC40-6 6176235 YP_001809324.1 CDS BamMC406_2631 NC_010551.1 2921542 2922261 D PFAM: Nucleotidyl transferase; KEGG: bam:Bamb_2765 nucleotidyl transferase; nucleotidyl transferase 2921542..2922261 Burkholderia ambifaria MC40-6 6176018 YP_001809325.1 CDS BamMC406_2632 NC_010551.1 2922367 2924238 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2766 ABC transporter related; ABC transporter-like protein complement(2922367..2924238) Burkholderia ambifaria MC40-6 6176124 YP_001809326.1 CDS BamMC406_2633 NC_010551.1 2924412 2924807 D PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_2767 thioesterase superfamily protein; thioesterase superfamily protein 2924412..2924807 Burkholderia ambifaria MC40-6 6176232 YP_001809327.1 CDS BamMC406_2634 NC_010551.1 2924836 2925318 R PFAM: conserved hypothetical protein; KEGG: bam:Bamb_2768 hypothetical protein; hypothetical protein complement(2924836..2925318) Burkholderia ambifaria MC40-6 6176302 YP_001809328.1 CDS BamMC406_2635 NC_010551.1 2925438 2926262 D TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: bam:Bamb_2769 formate dehydrogenase family accessory protein FdhD; formate dehydrogenase family accessory protein FdhD 2925438..2926262 Burkholderia ambifaria MC40-6 6175974 YP_001809329.1 CDS BamMC406_2636 NC_010551.1 2926323 2927090 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2926323..2927090) Burkholderia ambifaria MC40-6 6176340 YP_001809330.1 CDS BamMC406_2637 NC_010551.1 2927182 2928381 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2927182..2928381) Burkholderia ambifaria MC40-6 6175945 YP_001809331.1 CDS BamMC406_2638 NC_010551.1 2928457 2930892 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bam:Bamb_2772 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase complement(2928457..2930892) Burkholderia ambifaria MC40-6 6176327 YP_001809332.1 CDS BamMC406_2639 NC_010551.1 2931006 2932793 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bvi:Bcep1808_2827 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2931006..2932793) Burkholderia ambifaria MC40-6 6176020 YP_001809333.1 CDS BamMC406_2640 NC_010551.1 2932850 2933449 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_2773 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2932850..2933449) Burkholderia ambifaria MC40-6 6176316 YP_001809334.1 CDS BamMC406_2641 NC_010551.1 2933639 2934913 R PFAM: phospholipase D/Transphosphatidylase; KEGG: bam:Bamb_2774 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(2933639..2934913) Burkholderia ambifaria MC40-6 6178747 YP_001809335.1 CDS ntpA NC_010551.1 2934910 2935404 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(2934910..2935404) Burkholderia ambifaria MC40-6 6175951 YP_001809336.1 CDS aspS NC_010551.1 2935562 2937364 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2935562..2937364) Burkholderia ambifaria MC40-6 6176199 YP_001809337.1 CDS BamMC406_2644 NC_010551.1 2937432 2938082 R PFAM: protein of unknown function DUF502; KEGG: bam:Bamb_2777 protein of unknown function DUF502; hypothetical protein complement(2937432..2938082) Burkholderia ambifaria MC40-6 6176887 YP_001809338.1 CDS BamMC406_2645 NC_010551.1 2938144 2938479 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: bam:Bamb_2778 putative regulatory protein, FmdB family; FmdB family regulatory protein complement(2938144..2938479) Burkholderia ambifaria MC40-6 6176085 YP_001809339.1 CDS BamMC406_2646 NC_010551.1 2938576 2939202 R PFAM: thiopurine S-methyltransferase; Methyltransferase type 12; KEGG: bam:Bamb_2779 thiopurine S-methyltransferase; thiopurine S-methyltransferase complement(2938576..2939202) Burkholderia ambifaria MC40-6 6175954 YP_001809340.1 CDS ubiB NC_010551.1 2939220 2940797 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB complement(2939220..2940797) Burkholderia ambifaria MC40-6 6176246 YP_001809341.1 CDS BamMC406_2648 NC_010551.1 2940810 2941436 R PFAM: Sterol-binding domain protein; KEGG: bam:Bamb_2781 protein of unknown function DUF1243; sterol-binding domain-containing protein complement(2940810..2941436) Burkholderia ambifaria MC40-6 6176169 YP_001809342.1 CDS BamMC406_2649 NC_010551.1 2941599 2942633 R PFAM: import inner membrane translocase subunit Tim44; KEGG: bam:Bamb_2782 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 complement(2941599..2942633) Burkholderia ambifaria MC40-6 6176141 YP_001809343.1 CDS ubiE NC_010551.1 2942675 2943406 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(2942675..2943406) Burkholderia ambifaria MC40-6 6176346 YP_001809344.1 CDS BamMC406_2651 NC_010551.1 2943459 2943872 R PFAM: protein of unknown function DUF971; KEGG: bam:Bamb_2784 protein of unknown function DUF971; hypothetical protein complement(2943459..2943872) Burkholderia ambifaria MC40-6 6176017 YP_001809345.1 CDS BamMC406_2652 NC_010551.1 2943869 2944312 R PFAM: histidine triad (HIT) protein; KEGG: bam:Bamb_2785 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2943869..2944312) Burkholderia ambifaria MC40-6 6176285 YP_001809346.1 CDS BamMC406_2653 NC_010551.1 2944398 2948420 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: bam:Bamb_2786 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(2944398..2948420) Burkholderia ambifaria MC40-6 6176900 YP_001809347.1 CDS BamMC406_2654 NC_010551.1 2948996 2950519 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 2948996..2950519 Burkholderia ambifaria MC40-6 6177016 YP_001809348.1 CDS queF NC_010551.1 2950531 2951355 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2950531..2951355 Burkholderia ambifaria MC40-6 6176964 YP_001809349.1 CDS BamMC406_2656 NC_010551.1 2951473 2951859 R PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_2789 endoribonuclease L-PSP; endoribonuclease L-PSP complement(2951473..2951859) Burkholderia ambifaria MC40-6 6178896 YP_001809350.1 CDS BamMC406_2657 NC_010551.1 2951982 2953463 R PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: bam:Bamb_2790 N-acyl-D-amino-acid deacylase; N-acyl-D-amino-acid deacylase complement(2951982..2953463) Burkholderia ambifaria MC40-6 6176973 YP_001809351.1 CDS BamMC406_2658 NC_010551.1 2953466 2954440 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bam:Bamb_2791 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(2953466..2954440) Burkholderia ambifaria MC40-6 6179087 YP_001809352.1 CDS BamMC406_2659 NC_010551.1 2954519 2955799 D KEGG: bam:Bamb_2792 amino acid aldolase or racemase-like protein; amino acid aldolase-like protein 2954519..2955799 Burkholderia ambifaria MC40-6 6176899 YP_001809353.1 CDS BamMC406_2660 NC_010551.1 2955963 2956544 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_2793 intracellular protease, PfpI family; PfpI family intracellular peptidase 2955963..2956544 Burkholderia ambifaria MC40-6 6176948 YP_001809354.1 CDS BamMC406_2661 NC_010551.1 2956689 2957135 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_2794 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2956689..2957135) Burkholderia ambifaria MC40-6 6178660 YP_001809355.1 CDS BamMC406_2662 NC_010551.1 2957171 2958766 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2795 major facilitator superfamily MFS_1; major facilitator transporter complement(2957171..2958766) Burkholderia ambifaria MC40-6 6179025 YP_001809356.1 CDS BamMC406_2663 NC_010551.1 2958874 2959716 D KEGG: bam:Bamb_2796 hypothetical protein; hypothetical protein 2958874..2959716 Burkholderia ambifaria MC40-6 6176905 YP_001809357.1 CDS BamMC406_2664 NC_010551.1 2959686 2960648 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bam:Bamb_2797 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(2959686..2960648) Burkholderia ambifaria MC40-6 6176936 YP_001809358.1 CDS BamMC406_2665 NC_010551.1 2960751 2961185 R PFAM: CHRD domain containing protein; KEGG: bam:Bamb_2798 CHRD domain containing protein; CHRD domain-containing protein complement(2960751..2961185) Burkholderia ambifaria MC40-6 6178832 YP_001809359.1 CDS BamMC406_2666 NC_010551.1 2961600 2962601 D KEGG: bam:Bamb_2799 hypothetical protein; hypothetical protein 2961600..2962601 Burkholderia ambifaria MC40-6 6176974 YP_001809360.1 CDS BamMC406_2667 NC_010551.1 2962621 2963394 R PFAM: class II aldolase/adducin family protein; KEGG: bam:Bamb_2800 hypothetical protein; aldolase II superfamily protein complement(2962621..2963394) Burkholderia ambifaria MC40-6 6177296 YP_001809361.1 CDS BamMC406_2668 NC_010551.1 2963679 2965301 R PFAM: phospholipase D/Transphosphatidylase; KEGG: bam:Bamb_2801 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(2963679..2965301) Burkholderia ambifaria MC40-6 6178927 YP_001809362.1 CDS BamMC406_2669 NC_010551.1 2965538 2966251 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_2802 GntR domain protein; GntR family transcriptional regulator complement(2965538..2966251) Burkholderia ambifaria MC40-6 6177092 YP_001809363.1 CDS BamMC406_2670 NC_010551.1 2966392 2967192 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bam:Bamb_2803 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 2966392..2967192 Burkholderia ambifaria MC40-6 6177085 YP_001809364.1 CDS BamMC406_2671 NC_010551.1 2967189 2967914 D PFAM: protein of unknown function DUF162; KEGG: bam:Bamb_2804 protein of unknown function DUF162; hypothetical protein 2967189..2967914 Burkholderia ambifaria MC40-6 6179040 YP_001809365.1 CDS BamMC406_2672 NC_010551.1 2967911 2969356 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: bam:Bamb_2805 iron-sulfur cluster binding protein; iron-sulfur cluster binding protein 2967911..2969356 Burkholderia ambifaria MC40-6 6177029 YP_001809366.1 CDS BamMC406_2673 NC_010551.1 2969407 2971107 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: bam:Bamb_2806 L-lactate transport; L-lactate transport 2969407..2971107 Burkholderia ambifaria MC40-6 6178988 YP_001809367.1 CDS BamMC406_2674 NC_010551.1 2971219 2971980 R PFAM: peptidase M48 Ste24p; KEGG: bam:Bamb_2807 peptidase M48, Ste24p; peptidase M48 Ste24p complement(2971219..2971980) Burkholderia ambifaria MC40-6 6177044 YP_001809368.1 CDS BamMC406_2675 NC_010551.1 2972131 2972937 R PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_2808 glycosyl transferase, family 2; glycosyl transferase family protein complement(2972131..2972937) Burkholderia ambifaria MC40-6 6177061 YP_001809369.1 CDS BamMC406_2676 NC_010551.1 2973063 2974361 R PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_2809 endoribonuclease L-PSP; endoribonuclease L-PSP complement(2973063..2974361) Burkholderia ambifaria MC40-6 6176991 YP_001809370.1 CDS BamMC406_2677 NC_010551.1 2974459 2975175 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_2810 short chain dehydrogenase; short chain dehydrogenase complement(2974459..2975175) Burkholderia ambifaria MC40-6 6177026 YP_001809371.1 CDS BamMC406_2678 NC_010551.1 2975284 2975568 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(2975284..2975568) Burkholderia ambifaria MC40-6 6176996 YP_001809372.1 CDS BamMC406_2679 NC_010551.1 2976134 2976778 D KEGG: bam:Bamb_2812 membrane protein-like protein; hypothetical protein 2976134..2976778 Burkholderia ambifaria MC40-6 6177114 YP_001809373.1 CDS BamMC406_2680 NC_010551.1 2976775 2978604 D KEGG: bam:Bamb_2813 acyl-coenzyme A synthetases/AMP-(fatty) acid ligases-like protein; acyl-coenzyme A synthetase/AMP-(fatty) acid ligase-like protein 2976775..2978604 Burkholderia ambifaria MC40-6 6177217 YP_001809374.1 CDS BamMC406_2681 NC_010551.1 2978601 2979575 D KEGG: bam:Bamb_2814 acyltransferase-like protein; acyltransferase-like protein 2978601..2979575 Burkholderia ambifaria MC40-6 6177226 YP_001809375.1 CDS BamMC406_2682 NC_010551.1 2979572 2980216 D KEGG: bam:Bamb_2815 hypothetical protein; hypothetical protein 2979572..2980216 Burkholderia ambifaria MC40-6 6177222 YP_001809376.1 CDS BamMC406_2683 NC_010551.1 2980216 2982696 D KEGG: bam:Bamb_2816 exporter-like protein; exporter-like protein 2980216..2982696 Burkholderia ambifaria MC40-6 6177428 YP_001809377.1 CDS BamMC406_2684 NC_010551.1 2982693 2983577 D PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_2817 polysaccharide deacetylase; polysaccharide deacetylase 2982693..2983577 Burkholderia ambifaria MC40-6 6177248 YP_001809378.1 CDS BamMC406_2685 NC_010551.1 2983642 2984865 D FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2983642..2984865 Burkholderia ambifaria MC40-6 6177281 YP_001809379.1 CDS BamMC406_2686 NC_010551.1 2984862 2985680 D KEGG: bam:Bamb_2819 hypothetical protein; hypothetical protein 2984862..2985680 Burkholderia ambifaria MC40-6 6177268 YP_001809380.1 CDS BamMC406_2687 NC_010551.1 2985677 2986207 D KEGG: bam:Bamb_2820 3-hydroxylacyl-(acyl carrier protein) dehydratase-like protein; 3-hydroxylacyl-(acyl carrier protein) dehydratase-like protein 2985677..2986207 Burkholderia ambifaria MC40-6 6177259 YP_001809381.1 CDS BamMC406_2688 NC_010551.1 2986230 2986520 D KEGG: bam:Bamb_2821 hypothetical protein; hypothetical protein 2986230..2986520 Burkholderia ambifaria MC40-6 6177251 YP_001809382.1 CDS BamMC406_2689 NC_010551.1 2986602 2986802 R KEGG: bam:Bamb_2822 hypothetical protein; hypothetical protein complement(2986602..2986802) Burkholderia ambifaria MC40-6 6176345 YP_001809383.1 CDS BamMC406_2690 NC_010551.1 2987002 2987745 R TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_2823 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase complement(2987002..2987745) Burkholderia ambifaria MC40-6 6177291 YP_001809384.1 CDS BamMC406_2691 NC_010551.1 2987963 2989144 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(2987963..2989144) Burkholderia ambifaria MC40-6 6177147 YP_001809385.1 CDS BamMC406_2692 NC_010551.1 2989421 2990002 R TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: bam:Bamb_2825 phasin family protein; phasin family protein complement(2989421..2990002) Burkholderia ambifaria MC40-6 6177258 YP_001809386.1 CDS BamMC406_2693 NC_010551.1 2990477 2991241 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bam:Bamb_2826 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(2990477..2991241) Burkholderia ambifaria MC40-6 6179017 YP_001809387.1 CDS BamMC406_2694 NC_010551.1 2991457 2991678 D KEGG: bam:Bamb_2827 hypothetical protein; hypothetical protein 2991457..2991678 Burkholderia ambifaria MC40-6 6177435 YP_001809388.1 CDS BamMC406_2695 NC_010551.1 2991959 2992519 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(2991959..2992519) Burkholderia ambifaria MC40-6 6177445 YP_001809389.1 CDS BamMC406_2696 NC_010551.1 2992623 2993780 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2838 major facilitator superfamily MFS_1; major facilitator transporter complement(2992623..2993780) Burkholderia ambifaria MC40-6 6177452 YP_001809390.1 CDS BamMC406_2697 NC_010551.1 2994074 2996959 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bam:Bamb_2839 excinuclease ABC, A subunit; excinuclease ABC subunit A 2994074..2996959 Burkholderia ambifaria MC40-6 6177171 YP_001809391.1 CDS BamMC406_2698 NC_010551.1 2997219 2998301 D KEGG: bam:Bamb_2840 putative transporter; putative transporter 2997219..2998301 Burkholderia ambifaria MC40-6 6177200 YP_001809392.1 CDS purU NC_010551.1 2998393 2999277 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(2998393..2999277) Burkholderia ambifaria MC40-6 6177166 YP_001809393.1 CDS BamMC406_2700 NC_010551.1 2999328 3000185 R PFAM: NUDIX hydrolase; KEGG: bam:Bamb_2842 NUDIX hydrolase; NUDIX hydrolase complement(2999328..3000185) Burkholderia ambifaria MC40-6 6177412 YP_001809394.1 CDS BamMC406_2701 NC_010551.1 3000191 3000805 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_2843 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3000191..3000805) Burkholderia ambifaria MC40-6 6177331 YP_001809395.1 CDS BamMC406_2702 NC_010551.1 3000832 3001398 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(3000832..3001398) Burkholderia ambifaria MC40-6 6177362 YP_001809396.1 CDS BamMC406_2703 NC_010551.1 3001477 3003489 R PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: bam:Bamb_2845 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(3001477..3003489) Burkholderia ambifaria MC40-6 6177209 YP_001809397.1 CDS BamMC406_2704 NC_010551.1 3003609 3004592 D KEGG: bam:Bamb_2846 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 3003609..3004592 Burkholderia ambifaria MC40-6 6177308 YP_001809398.1 CDS BamMC406_2705 NC_010551.1 3004592 3005128 D TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: bam:Bamb_2847 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3004592..3005128 Burkholderia ambifaria MC40-6 6177438 YP_001809399.1 CDS BamMC406_2706 NC_010551.1 3005132 3005746 D PFAM: protein of unknown function DUF1239; KEGG: bam:Bamb_2848 protein of unknown function DUF1239; hypothetical protein 3005132..3005746 Burkholderia ambifaria MC40-6 6178904 YP_001809400.1 CDS BamMC406_2707 NC_010551.1 3005767 3006432 D TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: bam:Bamb_2849 OstA family protein; lipopolysaccharide transport periplasmic protein LptA 3005767..3006432 Burkholderia ambifaria MC40-6 6178961 YP_001809401.1 CDS BamMC406_2708 NC_010551.1 3006429 3007205 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2850 ABC transporter related; ABC transporter-like protein 3006429..3007205 Burkholderia ambifaria MC40-6 6178908 YP_001809402.1 CDS BamMC406_2709 NC_010551.1 3007376 3008881 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3007376..3008881 Burkholderia ambifaria MC40-6 6178906 YP_001809403.1 CDS BamMC406_2710 NC_010551.1 3009039 3009398 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bam:Bamb_2852 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 3009039..3009398 Burkholderia ambifaria MC40-6 6176371 YP_001809404.1 CDS BamMC406_2711 NC_010551.1 3009568 3010107 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bam:Bamb_2853 putative PTS IIA-like nitrogen-regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN 3009568..3010107 Burkholderia ambifaria MC40-6 6178912 YP_001809405.1 CDS BamMC406_2712 NC_010551.1 3010183 3011205 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 3010183..3011205 Burkholderia ambifaria MC40-6 6178982 YP_001809406.1 CDS BamMC406_2713 NC_010551.1 3011251 3012189 D PFAM: conserved hypothetical protein; KEGG: bam:Bamb_2855 hypothetical protein; hypothetical protein 3011251..3012189 Burkholderia ambifaria MC40-6 6178997 YP_001809407.1 CDS BamMC406_2714 NC_010551.1 3012216 3012851 D PFAM: peptidase S16 lon domain protein; KEGG: bam:Bamb_2856 peptidase S16, lon domain protein; peptidase S16 lon domain-containing protein 3012216..3012851 Burkholderia ambifaria MC40-6 6178973 YP_001809408.1 CDS BamMC406_2715 NC_010551.1 3013052 3014197 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: bam:Bamb_2857 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(3013052..3014197) Burkholderia ambifaria MC40-6 6176367 YP_001809409.1 CDS BamMC406_2716 NC_010551.1 3014194 3015021 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3014194..3015021) Burkholderia ambifaria MC40-6 6178886 YP_001809410.1 CDS BamMC406_2717 NC_010551.1 3015108 3016931 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_2859 tetratricopeptide TPR_2 repeat protein; hypothetical protein 3015108..3016931 Burkholderia ambifaria MC40-6 6176300 YP_001809411.1 CDS lolB NC_010551.1 3016946 3017551 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 3016946..3017551 Burkholderia ambifaria MC40-6 6178968 YP_001809412.1 CDS ipk NC_010551.1 3017579 3018460 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3017579..3018460 Burkholderia ambifaria MC40-6 6177179 YP_001809413.1 CDS BamMC406_2720 NC_010551.1 3018635 3019597 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3018635..3019597 Burkholderia ambifaria MC40-6 6178812 YP_001809414.1 CDS BamMC406_2721 NC_010551.1 3019759 3020367 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 3019759..3020367 Burkholderia ambifaria MC40-6 6178827 YP_001809415.1 CDS BamMC406_2722 NC_010551.1 3020497 3021096 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3020497..3021096 Burkholderia ambifaria MC40-6 6178878 YP_001809416.1 CDS BamMC406_2723 NC_010551.1 3021222 3022289 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3021222..3022289 Burkholderia ambifaria MC40-6 6178862 YP_001809417.1 CDS BamMC406_2724 NC_010551.1 3022394 3022660 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bam:Bamb_2866 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3022394..3022660) Burkholderia ambifaria MC40-6 6178854 YP_001809418.1 CDS coaD NC_010551.1 3022720 3023217 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(3022720..3023217) Burkholderia ambifaria MC40-6 6179046 YP_001809419.1 CDS BamMC406_2726 NC_010551.1 3023329 3023943 R TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: bam:Bamb_2868 putative methyltransferase; methyltransferase complement(3023329..3023943) Burkholderia ambifaria MC40-6 6176069 YP_001809420.1 CDS BamMC406_2727 NC_010551.1 3024145 3025305 D KEGG: bam:Bamb_2869 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3024145..3025305 Burkholderia ambifaria MC40-6 6178861 YP_001809421.1 CDS BamMC406_2728 NC_010551.1 3025417 3026061 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_2870 maleylacetoacetate isomerase; maleylacetoacetate isomerase complement(3025417..3026061) Burkholderia ambifaria MC40-6 6176194 YP_001809422.1 CDS BamMC406_2729 NC_010551.1 3026227 3027225 D PFAM: glycosyl transferase family 3; KEGG: bam:Bamb_2871 hypothetical protein; glycosyl transferase family protein 3026227..3027225 Burkholderia ambifaria MC40-6 6176893 YP_001809423.1 CDS BamMC406_2730 NC_010551.1 3027631 3029277 D KEGG: bam:Bamb_2872 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; 2-isopropylmalate synthase 3027631..3029277 Burkholderia ambifaria MC40-6 6177107 YP_001809424.1 CDS BamMC406_2731 NC_010551.1 3029420 3029803 R KEGG: bam:Bamb_2873 hypothetical protein; hypothetical protein complement(3029420..3029803) Burkholderia ambifaria MC40-6 6177434 YP_001809425.1 CDS BamMC406_2732 NC_010551.1 3029849 3030418 R KEGG: bam:Bamb_2874 hypothetical protein; hypothetical protein complement(3029849..3030418) Burkholderia ambifaria MC40-6 6177443 YP_001809426.1 CDS BamMC406_2733 NC_010551.1 3030780 3031715 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3030780..3031715 Burkholderia ambifaria MC40-6 6177432 YP_001809427.1 CDS BamMC406_2734 NC_010551.1 3032044 3032322 D KEGG: bam:Bamb_2876 hypothetical protein; hypothetical protein 3032044..3032322 Burkholderia ambifaria MC40-6 6177470 YP_001809428.1 CDS BamMC406_2735 NC_010551.1 3032312 3033889 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bam:Bamb_2877 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 3032312..3033889 Burkholderia ambifaria MC40-6 6177469 YP_001809429.1 CDS BamMC406_2736 NC_010551.1 3033921 3035057 D KEGG: bam:Bamb_2878 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 3033921..3035057 Burkholderia ambifaria MC40-6 6177462 YP_001809430.1 CDS BamMC406_2737 NC_010551.1 3035111 3035233 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: bam:Bamb_2879 cyd operon protein YbgT; cyd operon protein YbgT 3035111..3035233 Burkholderia ambifaria MC40-6 6176545 YP_001809431.1 CDS BamMC406_2738 NC_010551.1 3035816 3038299 D PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; Glycoside hydrolase, family 20, catalytic core; KEGG: bam:Bamb_2880 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 3035816..3038299 Burkholderia ambifaria MC40-6 6176447 YP_001809432.1 CDS BamMC406_2739 NC_010551.1 3038507 3040270 R TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: bam:Bamb_2881 PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system N-acetylglucosamine-specific transporter subunit IIBC complement(3038507..3040270) Burkholderia ambifaria MC40-6 6176998 YP_001809433.1 CDS BamMC406_2740 NC_010551.1 3040358 3042940 R TIGRFAM: PTS system, glucose subfamily, IIA subunit; phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; sugar-specific permease EIIA 1 domain; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: bam:Bamb_2882 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(3040358..3042940) Burkholderia ambifaria MC40-6 6177162 YP_001809434.1 CDS BamMC406_2741 NC_010551.1 3042956 3043972 R PFAM: sugar isomerase (SIS); KEGG: bam:Bamb_2883 glutamine--fructose-6-phosphate transaminase (isomerizing); glutamine--fructose-6-phosphate transaminase complement(3042956..3043972) Burkholderia ambifaria MC40-6 6177441 YP_001809435.1 CDS BamMC406_2742 NC_010551.1 3043956 3045059 R KEGG: bam:Bamb_2884 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase complement(3043956..3045059) Burkholderia ambifaria MC40-6 6175981 YP_001809436.1 CDS BamMC406_2743 NC_010551.1 3045200 3045934 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bam:Bamb_2885 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3045200..3045934) Burkholderia ambifaria MC40-6 6176443 YP_001809437.1 CDS dnaE2 NC_010551.1 3046250 3049465 R DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase complement(3046250..3049465) Burkholderia ambifaria MC40-6 6177344 YP_001809438.1 CDS BamMC406_2745 NC_010551.1 3049472 3050959 R KEGG: bam:Bamb_2887 hypothetical protein; hypothetical protein complement(3049472..3050959) Burkholderia ambifaria MC40-6 6176795 YP_001809439.1 CDS BamMC406_2746 NC_010551.1 3050892 3051599 R KEGG: bam:Bamb_2888 hypothetical protein; hypothetical protein complement(3050892..3051599) Burkholderia ambifaria MC40-6 6176448 YP_001809440.1 CDS BamMC406_2747 NC_010551.1 3051804 3052112 D KEGG: bam:Bamb_2889 hypothetical protein; hypothetical protein 3051804..3052112 Burkholderia ambifaria MC40-6 6176539 YP_001809441.1 CDS BamMC406_2748 NC_010551.1 3052238 3052570 R PFAM: protein of unknown function DUF1493; KEGG: yen:YE2290 putative phage-associated acyl carrier protein; hypothetical protein complement(3052238..3052570) Burkholderia ambifaria MC40-6 6177369 YP_001809442.1 CDS BamMC406_2749 NC_010551.1 3052564 3053019 R KEGG: yps:YPTB1822 hypothetical protein; hypothetical protein complement(3052564..3053019) Burkholderia ambifaria MC40-6 6177141 YP_001809443.1 CDS BamMC406_2750 NC_010551.1 3053413 3054228 R TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bam:Bamb_2890 lipoprotein, YaeC family; YaeC family lipoprotein complement(3053413..3054228) Burkholderia ambifaria MC40-6 6176538 YP_001809444.1 CDS BamMC406_2751 NC_010551.1 3054405 3055970 R PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bam:Bamb_2891 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3054405..3055970) Burkholderia ambifaria MC40-6 6177471 YP_001809445.1 CDS BamMC406_2752 NC_010551.1 3056175 3056465 D PFAM: YCII-related; KEGG: bam:Bamb_2892 YCII-related; hypothetical protein 3056175..3056465 Burkholderia ambifaria MC40-6 6176052 YP_001809446.1 CDS BamMC406_2753 NC_010551.1 3056620 3057237 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: bvi:Bcep1808_2936 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(3056620..3057237) Burkholderia ambifaria MC40-6 6176042 YP_001809447.1 CDS BamMC406_2754 NC_010551.1 3057256 3058158 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(3057256..3058158) Burkholderia ambifaria MC40-6 6176003 YP_001809448.1 CDS BamMC406_2755 NC_010551.1 3058167 3059279 R PFAM: cytochrome oxidase assembly; KEGG: bam:Bamb_2895 cytochrome oxidase assembly; cytochrome oxidase assembly complement(3058167..3059279) Burkholderia ambifaria MC40-6 6176005 YP_001809449.1 CDS BamMC406_2756 NC_010551.1 3059305 3059862 R KEGG: bam:Bamb_2896 hypothetical protein; hypothetical protein complement(3059305..3059862) Burkholderia ambifaria MC40-6 6176007 YP_001809450.1 CDS BamMC406_2757 NC_010551.1 3059992 3060723 R KEGG: bam:Bamb_2897 SURF1 family protein; SURF1 family protein complement(3059992..3060723) Burkholderia ambifaria MC40-6 6176001 YP_001809451.1 CDS BamMC406_2758 NC_010551.1 3060787 3060996 D KEGG: bmu:Bmul_0462 hypothetical protein; hypothetical protein 3060787..3060996 Burkholderia ambifaria MC40-6 6175990 YP_001809452.1 CDS BamMC406_2759 NC_010551.1 3061172 3062029 R PFAM: cytochrome c oxidase subunit III; KEGG: bam:Bamb_2898 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(3061172..3062029) Burkholderia ambifaria MC40-6 6175993 YP_001809453.1 CDS BamMC406_2760 NC_010551.1 3062168 3062368 R KEGG: bam:Bamb_2899 hypothetical protein; hypothetical protein complement(3062168..3062368) Burkholderia ambifaria MC40-6 6175995 YP_001809454.1 CDS BamMC406_2761 NC_010551.1 3062385 3062993 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(3062385..3062993) Burkholderia ambifaria MC40-6 6176000 YP_001809455.1 CDS BamMC406_2762 NC_010551.1 3063029 3063169 R KEGG: bvi:Bcep1808_2945 hypothetical protein; hypothetical protein complement(3063029..3063169) Burkholderia ambifaria MC40-6 6177272 YP_001809456.1 CDS BamMC406_2763 NC_010551.1 3063250 3064857 R KEGG: bam:Bamb_2901 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I complement(3063250..3064857) Burkholderia ambifaria MC40-6 6175982 YP_001809457.1 CDS BamMC406_2764 NC_010551.1 3064901 3066508 R TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; OmpA/MotB domain protein; cytochrome C oxidase subunit II transmembrane region; KEGG: bam:Bamb_2902 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II complement(3064901..3066508) Burkholderia ambifaria MC40-6 6176989 YP_001809458.1 CDS BamMC406_2765 NC_010551.1 3066566 3067051 R KEGG: bam:Bamb_2903 integral membrane protein-like protein; integral membrane protein-like protein complement(3066566..3067051) Burkholderia ambifaria MC40-6 6176008 YP_001809459.1 CDS BamMC406_2766 NC_010551.1 3067286 3068251 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_2904 methyltransferase type 11; type 11 methyltransferase complement(3067286..3068251) Burkholderia ambifaria MC40-6 6176201 YP_001809460.1 CDS BamMC406_2767 NC_010551.1 3068337 3069149 D PFAM: phosphoribosyltransferase; KEGG: bam:Bamb_2905 phosphoribosyltransferase; phosphoribosyltransferase 3068337..3069149 Burkholderia ambifaria MC40-6 6176144 YP_001809461.1 CDS BamMC406_2768 NC_010551.1 3069257 3069727 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bam:Bamb_2906 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 3069257..3069727 Burkholderia ambifaria MC40-6 6176147 YP_001809462.1 CDS BamMC406_2769 NC_010551.1 3069760 3070284 R PFAM: Appr-1-p processing domain protein; KEGG: bam:Bamb_2907 Appr-1-p processing domain protein; appr-1-p processing domain-containing protein complement(3069760..3070284) Burkholderia ambifaria MC40-6 6176154 YP_001809463.1 CDS gpsA NC_010551.1 3070391 3071389 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3070391..3071389) Burkholderia ambifaria MC40-6 6176142 YP_001809464.1 CDS BamMC406_2771 NC_010551.1 3071416 3071907 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3071416..3071907) Burkholderia ambifaria MC40-6 6176123 YP_001809465.1 CDS BamMC406_2772 NC_010551.1 3072015 3072275 R TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bvi:Bcep1808_2955 glutaredoxin 3; glutaredoxin 3 complement(3072015..3072275) Burkholderia ambifaria MC40-6 6176125 YP_001809466.1 CDS BamMC406_2773 NC_010551.1 3072272 3072694 R PFAM: Rhodanese domain protein; KEGG: bam:Bamb_2911 rhodanese domain protein; rhodanese domain-containing protein complement(3072272..3072694) Burkholderia ambifaria MC40-6 6176134 YP_001809467.1 CDS gpmA NC_010551.1 3072831 3073577 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 3072831..3073577 Burkholderia ambifaria MC40-6 6176139 YP_001809468.1 CDS BamMC406_2775 NC_010551.1 3073856 3075391 D KEGG: bam:Bamb_2913 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 3073856..3075391 Burkholderia ambifaria MC40-6 6176013 YP_001809469.1 CDS BamMC406_2776 NC_010551.1 3075496 3076248 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: bam:Bamb_2914 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 3075496..3076248 Burkholderia ambifaria MC40-6 6176064 YP_001809470.1 CDS BamMC406_2777 NC_010551.1 3076337 3078112 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: bam:Bamb_2915 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(3076337..3078112) Burkholderia ambifaria MC40-6 6176021 YP_001809471.1 CDS BamMC406_2778 NC_010551.1 3078314 3078583 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: bch:Bcen2424_2861 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr complement(3078314..3078583) Burkholderia ambifaria MC40-6 6176168 YP_001809472.1 CDS BamMC406_2779 NC_010551.1 3078655 3079125 R PFAM: PTS system fructose subfamily IIA component; KEGG: bam:Bamb_2917 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA complement(3078655..3079125) Burkholderia ambifaria MC40-6 6176349 YP_001809473.1 CDS BamMC406_2780 NC_010551.1 3079357 3080313 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(3079357..3080313) Burkholderia ambifaria MC40-6 6176286 YP_001809474.1 CDS BamMC406_2781 NC_010551.1 3080339 3081628 R TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: bam:Bamb_2919 glutamate--cysteine ligase; glutamate--cysteine ligase complement(3080339..3081628) Burkholderia ambifaria MC40-6 6176290 YP_001809475.1 CDS BamMC406_2782 NC_010551.1 3081872 3083383 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bam:Bamb_2920 ammonium transporter; ammonium transporter complement(3081872..3083383) Burkholderia ambifaria MC40-6 6176291 YP_001809476.1 CDS BamMC406_2783 NC_010551.1 3083417 3083755 R PFAM: nitrogen regulatory protein P-II; KEGG: bmu:Bmul_0437 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(3083417..3083755) Burkholderia ambifaria MC40-6 6176268 YP_001809477.1 CDS BamMC406_2784 NC_010551.1 3084112 3084363 D PFAM: protein of unknown function DUF526; KEGG: bam:Bamb_2922 protein of unknown function DUF526; hypothetical protein 3084112..3084363 Burkholderia ambifaria MC40-6 6176223 YP_001809478.1 CDS BamMC406_2785 NC_010551.1 3084626 3086212 D KEGG: bam:Bamb_2923 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 3084626..3086212 Burkholderia ambifaria MC40-6 6176230 YP_001809479.1 CDS BamMC406_2786 NC_010551.1 3086546 3087118 R KEGG: bam:Bamb_2924 hypothetical protein; hypothetical protein complement(3086546..3087118) Burkholderia ambifaria MC40-6 6176253 YP_001809480.1 CDS BamMC406_2787 NC_010551.1 3087279 3087815 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_2925 redoxin domain protein; redoxin domain-containing protein 3087279..3087815 Burkholderia ambifaria MC40-6 6176256 YP_001809481.1 CDS BamMC406_2788 NC_010551.1 3087897 3089252 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bam:Bamb_2926 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(3087897..3089252) Burkholderia ambifaria MC40-6 6176183 YP_001809482.1 CDS BamMC406_2789 NC_010551.1 3089334 3091367 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_2927 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3089334..3091367) Burkholderia ambifaria MC40-6 6176205 YP_001809483.1 CDS BamMC406_2790 NC_010551.1 3091372 3092661 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(3091372..3092661) Burkholderia ambifaria MC40-6 6176187 YP_001809484.1 CDS actP NC_010551.1 3093017 3094702 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(3093017..3094702) Burkholderia ambifaria MC40-6 6176301 YP_001809485.1 CDS BamMC406_2792 NC_010551.1 3094719 3095024 R PFAM: protein of unknown function DUF485; KEGG: bam:Bamb_2930 protein of unknown function DUF485; hypothetical protein complement(3094719..3095024) Burkholderia ambifaria MC40-6 6177593 YP_001809486.1 CDS BamMC406_2793 NC_010551.1 3095265 3096470 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_2931 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(3095265..3096470) Burkholderia ambifaria MC40-6 6177519 YP_001809487.1 CDS BamMC406_2794 NC_010551.1 3096501 3097646 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bam:Bamb_2932 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3096501..3097646) Burkholderia ambifaria MC40-6 6177556 YP_001809488.1 CDS BamMC406_2795 NC_010551.1 3097661 3098857 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bam:Bamb_2933 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3097661..3098857) Burkholderia ambifaria MC40-6 6177578 YP_001809489.1 CDS BamMC406_2796 NC_010551.1 3098887 3101022 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bam:Bamb_2934 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase complement(3098887..3101022) Burkholderia ambifaria MC40-6 6177532 YP_001809490.1 CDS BamMC406_2797 NC_010551.1 3101251 3102213 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2935 transcriptional regulator, LysR family; LysR family transcriptional regulator 3101251..3102213 Burkholderia ambifaria MC40-6 6176356 YP_001809491.1 CDS BamMC406_2798 NC_010551.1 3102284 3104164 D KEGG: bam:Bamb_2936 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3102284..3104164 Burkholderia ambifaria MC40-6 6177533 YP_001809492.1 CDS BamMC406_2799 NC_010551.1 3104442 3105434 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(3104442..3105434) Burkholderia ambifaria MC40-6 6176368 YP_001809493.1 CDS lipB NC_010551.1 3105427 3106182 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(3105427..3106182) Burkholderia ambifaria MC40-6 6177522 YP_001809494.1 CDS BamMC406_2801 NC_010551.1 3106266 3106592 R KEGG: bam:Bamb_2939 hypothetical protein; hypothetical protein complement(3106266..3106592) Burkholderia ambifaria MC40-6 6176311 YP_001809495.1 CDS BamMC406_2802 NC_010551.1 3106695 3107666 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3106695..3107666 Burkholderia ambifaria MC40-6 6176350 YP_001809496.1 CDS BamMC406_2803 NC_010551.1 3107737 3108045 R PFAM: protein of unknown function DUF493; KEGG: bam:Bamb_2941 hypothetical protein; hypothetical protein complement(3107737..3108045) Burkholderia ambifaria MC40-6 6176315 YP_001809497.1 CDS BamMC406_2804 NC_010551.1 3108045 3108971 R PFAM: aminotransferase class IV; KEGG: bam:Bamb_2942 aminotransferase, class IV; class IV aminotransferase complement(3108045..3108971) Burkholderia ambifaria MC40-6 6177484 YP_001809498.1 CDS BamMC406_2805 NC_010551.1 3109020 3110333 R PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bam:Bamb_2943 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(3109020..3110333) Burkholderia ambifaria MC40-6 6177536 YP_001809499.1 CDS BamMC406_2806 NC_010551.1 3110838 3111482 R KEGG: bam:Bamb_2944 hydrolase of the alpha/beta superfamily-like protein; alpha/beta fold family hydrolase-like protein complement(3110838..3111482) Burkholderia ambifaria MC40-6 6179037 YP_001809500.1 CDS BamMC406_2807 NC_010551.1 3111496 3111813 R KEGG: bam:Bamb_2945 ferredoxin-like protein; ferredoxin-like protein complement(3111496..3111813) Burkholderia ambifaria MC40-6 6179098 YP_001809501.1 CDS BamMC406_2808 NC_010551.1 3111968 3113119 R KEGG: bam:Bamb_2946 VanZ like protein; VirB8 protein complement(3111968..3113119) Burkholderia ambifaria MC40-6 6177483 YP_001809502.1 CDS BamMC406_2809 NC_010551.1 3113139 3113762 R KEGG: bam:Bamb_2947 ABC-type uncharacterized transport system auxiliary component-like protein; ABC transporter auxiliary component-like protein complement(3113139..3113762) Burkholderia ambifaria MC40-6 6178614 YP_001809503.1 CDS BamMC406_2810 NC_010551.1 3113852 3114787 R PFAM: Mammalian cell entry related domain protein; KEGG: bam:Bamb_2948 mammalian cell entry related domain protein; hypothetical protein complement(3113852..3114787) Burkholderia ambifaria MC40-6 6177465 YP_001809504.1 CDS BamMC406_2811 NC_010551.1 3114812 3115723 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2949 ABC transporter related; ABC transporter-like protein complement(3114812..3115723) Burkholderia ambifaria MC40-6 6177426 YP_001809505.1 CDS BamMC406_2812 NC_010551.1 3115720 3116844 R PFAM: protein of unknown function DUF140; KEGG: bam:Bamb_2950 protein of unknown function DUF140; hypothetical protein complement(3115720..3116844) Burkholderia ambifaria MC40-6 6176164 YP_001809506.1 CDS BamMC406_2813 NC_010551.1 3117135 3119195 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bam:Bamb_2951 5'-nucleotidase domain protein; 5'-nucleotidase domain-containing protein 3117135..3119195 Burkholderia ambifaria MC40-6 6178354 YP_001809507.1 CDS BamMC406_2814 NC_010551.1 3119192 3120049 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: bam:Bamb_2952 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 3119192..3120049 Burkholderia ambifaria MC40-6 6177595 YP_001809508.1 CDS BamMC406_2816 NC_010551.1 3121723 3122643 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 3121723..3122643 Burkholderia ambifaria MC40-6 6177630 YP_001809509.1 CDS BamMC406_2817 NC_010551.1 3122640 3123428 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 3122640..3123428 Burkholderia ambifaria MC40-6 6177487 YP_001809510.1 CDS BamMC406_2818 NC_010551.1 3123654 3123896 D KEGG: bam:Bamb_2955 hypothetical protein; hypothetical protein 3123654..3123896 Burkholderia ambifaria MC40-6 6177641 YP_001809511.1 CDS BamMC406_2819 NC_010551.1 3123913 3124398 R TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: bam:Bamb_2956 RfaE bifunctional protein; rfaE bifunctional protein complement(3123913..3124398) Burkholderia ambifaria MC40-6 6177558 YP_001809512.1 CDS BamMC406_2820 NC_010551.1 3124564 3125442 R KEGG: bam:Bamb_2957 hypothetical protein; hypothetical protein complement(3124564..3125442) Burkholderia ambifaria MC40-6 6177574 YP_001809513.1 CDS BamMC406_2821 NC_010551.1 3125938 3127164 R PFAM: Patatin; KEGG: bam:Bamb_2958 patatin; patatin complement(3125938..3127164) Burkholderia ambifaria MC40-6 6177575 YP_001809514.1 CDS BamMC406_2822 NC_010551.1 3127189 3127938 R KEGG: bam:Bamb_2959 hypothetical protein; hypothetical protein complement(3127189..3127938) Burkholderia ambifaria MC40-6 6177530 YP_001809515.1 CDS BamMC406_2823 NC_010551.1 3128018 3128845 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3128018..3128845) Burkholderia ambifaria MC40-6 6177570 YP_001809516.1 CDS BamMC406_2824 NC_010551.1 3128963 3129955 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bam:Bamb_2961 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(3128963..3129955) Burkholderia ambifaria MC40-6 6177580 YP_001809517.1 CDS BamMC406_2825 NC_010551.1 3130083 3130958 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_2962 transcriptional regulator, IclR family; IclR family transcriptional regulator 3130083..3130958 Burkholderia ambifaria MC40-6 6177552 YP_001809518.1 CDS BamMC406_2826 NC_010551.1 3131120 3132403 D KEGG: bam:Bamb_2963 hypothetical protein; hypothetical protein 3131120..3132403 Burkholderia ambifaria MC40-6 6177503 YP_001809519.1 CDS BamMC406_2827 NC_010551.1 3132649 3132906 D KEGG: bam:Bamb_2964 hypothetical protein; hypothetical protein 3132649..3132906 Burkholderia ambifaria MC40-6 6177525 YP_001809520.1 CDS BamMC406_2828 NC_010551.1 3133169 3134236 D PFAM: homocysteine S-methyltransferase; KEGG: bam:Bamb_2965 methionine synthase; homocysteine S-methyltransferase 3133169..3134236 Burkholderia ambifaria MC40-6 6177493 YP_001809521.1 CDS BamMC406_2829 NC_010551.1 3134283 3137000 D KEGG: bam:Bamb_2966 methionine synthase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; methionine synthase 3134283..3137000 Burkholderia ambifaria MC40-6 6177562 YP_001809522.1 CDS BamMC406_2830 NC_010551.1 3137114 3137437 R PFAM: Domain of unknown function DUF1840; KEGG: bam:Bamb_2967 hypothetical protein; hypothetical protein complement(3137114..3137437) Burkholderia ambifaria MC40-6 6177665 YP_001809523.1 CDS argS NC_010551.1 3137639 3139420 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3137639..3139420 Burkholderia ambifaria MC40-6 6177629 YP_001809524.1 CDS BamMC406_2832 NC_010551.1 3139518 3140423 D PFAM: Sporulation domain protein; KEGG: bam:Bamb_2969 sporulation domain protein; sporulation domain-containing protein 3139518..3140423 Burkholderia ambifaria MC40-6 6177698 YP_001809525.1 CDS BamMC406_2833 NC_010551.1 3140493 3141134 D PFAM: DSBA oxidoreductase; KEGG: bam:Bamb_2970 DsbA oxidoreductase; DSBA oxidoreductase 3140493..3141134 Burkholderia ambifaria MC40-6 6177694 YP_001809526.1 CDS BamMC406_2834 NC_010551.1 3141154 3141927 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_2971 short chain dehydrogenase; short chain dehydrogenase 3141154..3141927 Burkholderia ambifaria MC40-6 6177671 YP_001809527.1 CDS BamMC406_2835 NC_010551.1 3142296 3143891 D PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_2972 extracellular solute-binding protein, family 5; extracellular solute-binding protein 3142296..3143891 Burkholderia ambifaria MC40-6 6177638 YP_001809528.1 CDS BamMC406_2836 NC_010551.1 3144082 3145722 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2973 ABC transporter related; ABC transporter-like protein 3144082..3145722 Burkholderia ambifaria MC40-6 6177643 YP_001809529.1 CDS BamMC406_2837 NC_010551.1 3145884 3146960 R PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_2974 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(3145884..3146960) Burkholderia ambifaria MC40-6 6177617 YP_001809530.1 CDS aceK NC_010551.1 3147311 3149137 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 3147311..3149137 Burkholderia ambifaria MC40-6 6177589 YP_001809531.1 CDS BamMC406_2839 NC_010551.1 3149217 3149987 D PFAM: carbonic anhydrase; KEGG: bam:Bamb_2976 carbonate dehydratase; carbonate dehydratase 3149217..3149987 Burkholderia ambifaria MC40-6 6177616 YP_001809532.1 CDS BamMC406_2840 NC_010551.1 3150120 3150797 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_2977 short chain dehydrogenase; short chain dehydrogenase 3150120..3150797 Burkholderia ambifaria MC40-6 6177647 YP_001809533.1 CDS BamMC406_2841 NC_010551.1 3150837 3151274 D KEGG: bam:Bamb_2978 hypothetical protein; hypothetical protein 3150837..3151274 Burkholderia ambifaria MC40-6 6177598 YP_001809534.1 CDS BamMC406_2842 NC_010551.1 3151383 3152642 D KEGG: bam:Bamb_2979 dienelactone hydrolase and related enzyme-like protein; dienelactone hydrolase-like protein 3151383..3152642 Burkholderia ambifaria MC40-6 6177656 YP_001809535.1 CDS BamMC406_2843 NC_010551.1 3153046 3154392 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3153046..3154392 Burkholderia ambifaria MC40-6 6177827 YP_001809536.1 CDS BamMC406_2844 NC_010551.1 3154389 3155726 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 3154389..3155726 Burkholderia ambifaria MC40-6 6177772 YP_001809537.1 CDS bioD NC_010551.1 3155723 3156442 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 3155723..3156442 Burkholderia ambifaria MC40-6 6177755 YP_001809538.1 CDS BamMC406_2846 NC_010551.1 3156479 3157498 D KEGG: bam:Bamb_2983 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 3156479..3157498 Burkholderia ambifaria MC40-6 6177096 YP_001809539.1 CDS BamMC406_2847 NC_010551.1 3157601 3158326 R PFAM: CutC family protein; KEGG: bam:Bamb_2984 CutC family protein; CutC family protein complement(3157601..3158326) Burkholderia ambifaria MC40-6 6177663 YP_001809540.1 CDS BamMC406_2848 NC_010551.1 3158403 3159689 R PFAM: EAL domain protein; KEGG: bam:Bamb_2985 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(3158403..3159689) Burkholderia ambifaria MC40-6 6177759 YP_001809541.1 CDS BamMC406_2849 NC_010551.1 3159981 3161648 D TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bam:Bamb_2986 Na+/H+ antiporter; Na+/H+ antiporter 3159981..3161648 Burkholderia ambifaria MC40-6 6177738 YP_001809542.1 CDS BamMC406_2850 NC_010551.1 3162177 3163538 D PFAM: glycoside hydrolase family 1; KEGG: bam:Bamb_2987 glycoside hydrolase, family 1; glycoside hydrolase family protein 3162177..3163538 Burkholderia ambifaria MC40-6 6177748 YP_001809543.1 CDS BamMC406_2851 NC_010551.1 3163672 3167244 R catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; 2-oxoacid ferredoxin oxidoreductase complement(3163672..3167244) Burkholderia ambifaria MC40-6 6177779 YP_001809544.1 CDS BamMC406_2852 NC_010551.1 3169508 3170065 R PFAM: transferase hexapeptide repeat containing protein; KEGG: bam:Bamb_2989 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(3169508..3170065) Burkholderia ambifaria MC40-6 6177668 YP_001809545.1 CDS BamMC406_2853 NC_010551.1 3170495 3171109 D PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_2990 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 3170495..3171109 Burkholderia ambifaria MC40-6 6177710 YP_001809546.1 CDS BamMC406_2854 NC_010551.1 3171199 3172080 R PFAM: Ion transport 2 domain protein ; K channel inward rectifier conserved region 2 domain protein; KEGG: bam:Bamb_2991 K+ channel, inward rectifier, conserved region 2 domain protein; K+ channel inward rectifier domain-containing protein complement(3171199..3172080) Burkholderia ambifaria MC40-6 6177729 YP_001809547.1 CDS BamMC406_2855 NC_010551.1 3172379 3173398 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_2992 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein complement(3172379..3173398) Burkholderia ambifaria MC40-6 6177899 YP_001809548.1 CDS BamMC406_2856 NC_010551.1 3173851 3174744 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bam:Bamb_2993 dihydrodipicolinate synthase; dihydrodipicolinate synthase 3173851..3174744 Burkholderia ambifaria MC40-6 6177871 YP_001809549.1 CDS BamMC406_2857 NC_010551.1 3175219 3176265 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2994 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3175219..3176265) Burkholderia ambifaria MC40-6 6177893 YP_001809550.1 CDS BamMC406_2858 NC_010551.1 3176373 3177644 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_2995 major facilitator superfamily MFS_1; major facilitator transporter 3176373..3177644 Burkholderia ambifaria MC40-6 6177869 YP_001809551.1 CDS BamMC406_2859 NC_010551.1 3177688 3179889 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_2996 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(3177688..3179889) Burkholderia ambifaria MC40-6 6177854 YP_001809552.1 CDS BamMC406_2860 NC_010551.1 3180034 3180672 R PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_2997 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(3180034..3180672) Burkholderia ambifaria MC40-6 6177848 YP_001809553.1 CDS BamMC406_2861 NC_010551.1 3180786 3181706 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_2998 transcriptional regulator, LysR family; LysR family transcriptional regulator 3180786..3181706 Burkholderia ambifaria MC40-6 6177858 YP_001809554.1 CDS BamMC406_2862 NC_010551.1 3181712 3183937 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_2999 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(3181712..3183937) Burkholderia ambifaria MC40-6 6177800 YP_001809555.1 CDS BamMC406_2863 NC_010551.1 3183934 3184935 R PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: bam:Bamb_3000 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase FAD-binding complement(3183934..3184935) Burkholderia ambifaria MC40-6 6177840 YP_001809556.1 CDS BamMC406_2864 NC_010551.1 3184954 3185709 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_3001 ferredoxin; (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(3184954..3185709) Burkholderia ambifaria MC40-6 6177776 YP_001809557.1 CDS BamMC406_2865 NC_010551.1 3186267 3186551 D KEGG: bam:Bamb_3002 hypothetical protein; hypothetical protein 3186267..3186551 Burkholderia ambifaria MC40-6 6177780 YP_001809558.1 CDS BamMC406_2866 NC_010551.1 3186601 3188721 D KEGG: bam:Bamb_3003 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; phospholipase C, phosphocholine-specific 3186601..3188721 Burkholderia ambifaria MC40-6 6177816 YP_001809559.1 CDS BamMC406_2867 NC_010551.1 3188773 3189396 R PFAM: protein of unknown function DUF1234; KEGG: bam:Bamb_3004 protein of unknown function DUF1234; hypothetical protein complement(3188773..3189396) Burkholderia ambifaria MC40-6 6177907 YP_001809560.1 CDS BamMC406_2868 NC_010551.1 3189759 3190196 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_3005 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3189759..3190196 Burkholderia ambifaria MC40-6 6178111 YP_001809561.1 CDS BamMC406_2869 NC_010551.1 3190201 3191142 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_3006 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 3190201..3191142 Burkholderia ambifaria MC40-6 6177994 YP_001809562.1 CDS BamMC406_2870 NC_010551.1 3191171 3192103 D catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 3191171..3192103 Burkholderia ambifaria MC40-6 6177937 YP_001809563.1 CDS BamMC406_2871 NC_010551.1 3192125 3192631 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bam:Bamb_3008 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 3192125..3192631 Burkholderia ambifaria MC40-6 6178041 YP_001809564.1 CDS BamMC406_2872 NC_010551.1 3192628 3192834 D PFAM: protein of unknown function DUF1289; KEGG: bam:Bamb_3009 protein of unknown function DUF1289; hypothetical protein 3192628..3192834 Burkholderia ambifaria MC40-6 6178005 YP_001809565.1 CDS BamMC406_2873 NC_010551.1 3193064 3193966 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_3010 protein of unknown function DUF6, transmembrane; hypothetical protein complement(3193064..3193966) Burkholderia ambifaria MC40-6 6177904 YP_001809566.1 CDS BamMC406_2874 NC_010551.1 3194080 3194571 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_3011 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3194080..3194571 Burkholderia ambifaria MC40-6 6177972 YP_001809567.1 CDS BamMC406_2875 NC_010551.1 3194604 3195500 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_3012 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3194604..3195500) Burkholderia ambifaria MC40-6 6177961 YP_001809568.1 CDS BamMC406_2876 NC_010551.1 3195780 3196739 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: bam:Bamb_3013 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3195780..3196739 Burkholderia ambifaria MC40-6 6177997 YP_001809569.1 CDS BamMC406_2877 NC_010551.1 3196863 3197825 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3014 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3196863..3197825) Burkholderia ambifaria MC40-6 6177877 YP_001809570.1 CDS BamMC406_2878 NC_010551.1 3197997 3199073 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_3015 porin, gram-negative type; porin complement(3197997..3199073) Burkholderia ambifaria MC40-6 6177940 YP_001809571.1 CDS BamMC406_2879 NC_010551.1 3199441 3199929 R KEGG: bam:Bamb_3016 hypothetical protein; hypothetical protein complement(3199441..3199929) Burkholderia ambifaria MC40-6 6177866 YP_001809572.1 CDS BamMC406_2880 NC_010551.1 3200259 3201302 D PFAM: Bile acid:sodium symporter; KEGG: bam:Bamb_3017 bile acid:sodium symporter; bile acid:sodium symporter 3200259..3201302 Burkholderia ambifaria MC40-6 6178045 YP_001809573.1 CDS BamMC406_2881 NC_010551.1 3201586 3203424 D PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: bam:Bamb_3018 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3201586..3203424 Burkholderia ambifaria MC40-6 6177725 YP_001809574.1 CDS BamMC406_2882 NC_010551.1 3203602 3204621 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_3019 transcriptional regulator, LacI family; LacI family transcriptional regulator 3203602..3204621 Burkholderia ambifaria MC40-6 6178089 YP_001809575.1 CDS BamMC406_2883 NC_010551.1 3204618 3205898 D PFAM: N-acylglucosamine 2-epimerase; KEGG: bam:Bamb_3020 N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 3204618..3205898 Burkholderia ambifaria MC40-6 6178168 YP_001809576.1 CDS BamMC406_2884 NC_010551.1 3205895 3206803 D PFAM: PfkB domain protein; KEGG: bam:Bamb_3021 PfkB domain protein; ribokinase-like domain-containing protein 3205895..3206803 Burkholderia ambifaria MC40-6 6178152 YP_001809577.1 CDS BamMC406_2885 NC_010551.1 3206911 3207132 D KEGG: bam:Bamb_3022 hypothetical protein; hypothetical protein 3206911..3207132 Burkholderia ambifaria MC40-6 6178084 YP_001809578.1 CDS BamMC406_2886 NC_010551.1 3207210 3207404 R KEGG: bam:Bamb_3023 hypothetical protein; hypothetical protein complement(3207210..3207404) Burkholderia ambifaria MC40-6 6177942 YP_001809579.1 CDS BamMC406_2887 NC_010551.1 3207702 3208892 R PFAM: protein of unknown function DUF185; KEGG: bam:Bamb_3024 protein of unknown function DUF185; hypothetical protein complement(3207702..3208892) Burkholderia ambifaria MC40-6 6179070 YP_001809580.1 CDS BamMC406_2888 NC_010551.1 3208906 3209649 D KEGG: bam:Bamb_3025 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3208906..3209649 Burkholderia ambifaria MC40-6 6178096 YP_001809581.1 CDS BamMC406_2889 NC_010551.1 3209728 3210132 D KEGG: bam:Bamb_3026 dihydroneopterin aldolase; dihydroneopterin aldolase 3209728..3210132 Burkholderia ambifaria MC40-6 6178122 YP_001809582.1 CDS BamMC406_2890 NC_010551.1 3210129 3211151 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 3210129..3211151 Burkholderia ambifaria MC40-6 6178009 YP_001809583.1 CDS BamMC406_2891 NC_010551.1 3211286 3212647 D TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: bam:Bamb_3028 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 3211286..3212647 Burkholderia ambifaria MC40-6 6178035 YP_001809584.1 CDS BamMC406_2892 NC_010551.1 3212699 3214516 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3212699..3214516 Burkholderia ambifaria MC40-6 6178086 YP_001809585.1 CDS BamMC406_2893 NC_010551.1 3214657 3215022 D PFAM: protein of unknown function DUF1044; KEGG: bam:Bamb_3030 protein of unknown function DUF1044; hypothetical protein 3214657..3215022 Burkholderia ambifaria MC40-6 6178155 YP_001809586.1 CDS BamMC406_2894 NC_010551.1 3215015 3215335 D KEGG: bam:Bamb_3031 transcriptional regulator-like protein; transcriptional regulator-like protein 3215015..3215335 Burkholderia ambifaria MC40-6 6177895 YP_001809587.1 CDS BamMC406_2895 NC_010551.1 3215419 3215871 D KEGG: bam:Bamb_3032 hypothetical protein; hypothetical protein 3215419..3215871 Burkholderia ambifaria MC40-6 6177833 YP_001809588.1 CDS BamMC406_2896 NC_010551.1 3215871 3216089 D KEGG: bam:Bamb_3033 hypothetical protein; hypothetical protein 3215871..3216089 Burkholderia ambifaria MC40-6 6177837 YP_001809589.1 CDS BamMC406_2897 NC_010551.1 3216168 3217004 R PFAM: iron permease FTR1; KEGG: bam:Bamb_3034 iron permease FTR1; iron permease FTR1 complement(3216168..3217004) Burkholderia ambifaria MC40-6 6177842 YP_001809590.1 CDS BamMC406_2898 NC_010551.1 3217017 3217349 R KEGG: bam:Bamb_3035 hypothetical protein; hypothetical protein complement(3217017..3217349) Burkholderia ambifaria MC40-6 6177815 YP_001809591.1 CDS BamMC406_2899 NC_010551.1 3217680 3217880 D PFAM: Heavy metal transport/detoxification protein; KEGG: bam:Bamb_3036 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 3217680..3217880 Burkholderia ambifaria MC40-6 6177785 YP_001809592.1 CDS BamMC406_2900 NC_010551.1 3217941 3219431 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3037 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase complement(3217941..3219431) Burkholderia ambifaria MC40-6 6177814 YP_001809593.1 CDS BamMC406_2901 NC_010551.1 3219517 3220068 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_3038 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator complement(3219517..3220068) Burkholderia ambifaria MC40-6 6177781 YP_001809594.1 CDS BamMC406_2902 NC_010551.1 3220994 3221779 D PFAM: peptidase C26; KEGG: bam:Bamb_3040 peptidase C26; peptidase C26 3220994..3221779 Burkholderia ambifaria MC40-6 6177817 YP_001809595.1 CDS BamMC406_2903 NC_010551.1 3221809 3223146 D PFAM: glutamine synthetase catalytic region; KEGG: bam:Bamb_3041 glutamate--ammonia ligase; glutamate--putrescine ligase 3221809..3223146 Burkholderia ambifaria MC40-6 6178181 YP_001809596.1 CDS BamMC406_2904 NC_010551.1 3223182 3224615 D PFAM: aminotransferase class-III; KEGG: bam:Bamb_3042 putative aminotransferase; putative aminotransferase 3223182..3224615 Burkholderia ambifaria MC40-6 6177612 YP_001809597.1 CDS BamMC406_2905 NC_010551.1 3224678 3225793 D PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_3043 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3224678..3225793 Burkholderia ambifaria MC40-6 6178109 YP_001809598.1 CDS BamMC406_2906 NC_010551.1 3225972 3227138 D TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_3044 spermidine/putrescine ABC transporter ATPase subunit; spermidine/putrescine ABC transporter ATPase 3225972..3227138 Burkholderia ambifaria MC40-6 6177847 YP_001809599.1 CDS BamMC406_2907 NC_010551.1 3227146 3228141 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3045 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3227146..3228141 Burkholderia ambifaria MC40-6 6178104 YP_001809600.1 CDS BamMC406_2908 NC_010551.1 3228138 3228977 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3046 binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase 3228138..3228977 Burkholderia ambifaria MC40-6 6178048 YP_001809601.1 CDS BamMC406_2909 NC_010551.1 3229079 3230671 D KEGG: bam:Bamb_3047 hypothetical protein; hypothetical protein 3229079..3230671 Burkholderia ambifaria MC40-6 6178049 YP_001809602.1 CDS BamMC406_2910 NC_010551.1 3230784 3232088 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_3048 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3230784..3232088 Burkholderia ambifaria MC40-6 6178046 YP_001809603.1 CDS BamMC406_2911 NC_010551.1 3232114 3233415 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_3049 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3232114..3233415 Burkholderia ambifaria MC40-6 6178085 YP_001809604.1 CDS BamMC406_2912 NC_010551.1 3233583 3234248 R PFAM: protein of unknown function DUF799; KEGG: bmu:Bmul_2997 protein of unknown function DUF799; hypothetical protein complement(3233583..3234248) Burkholderia ambifaria MC40-6 6177803 YP_001809605.1 CDS BamMC406_2913 NC_010551.1 3234259 3234687 R KEGG: bch:Bcen2424_3004 hypothetical protein; hypothetical protein complement(3234259..3234687) Burkholderia ambifaria MC40-6 6178019 YP_001809606.1 CDS BamMC406_2914 NC_010551.1 3234771 3235448 R PFAM: Curli production assembly/transport component CsgG; KEGG: bch:Bcen2424_3005 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG complement(3234771..3235448) Burkholderia ambifaria MC40-6 6177763 YP_001809607.1 CDS BamMC406_2915 NC_010551.1 3235880 3237235 R TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bam:Bamb_3050 glutathione-disulfide reductase; glutathione-disulfide reductase complement(3235880..3237235) Burkholderia ambifaria MC40-6 6178303 YP_001809608.1 CDS BamMC406_2916 NC_010551.1 3237476 3237700 R KEGG: bam:Bamb_3051 hypothetical protein; hypothetical protein complement(3237476..3237700) Burkholderia ambifaria MC40-6 6178179 YP_001809609.1 CDS BamMC406_2917 NC_010551.1 3238076 3239230 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_3052 porin, gram-negative type; porin complement(3238076..3239230) Burkholderia ambifaria MC40-6 6178192 YP_001809610.1 CDS BamMC406_2918 NC_010551.1 3239372 3240193 R PFAM: protein of unknown function DUF1275; KEGG: bam:Bamb_3053 protein of unknown function DUF1275; hypothetical protein complement(3239372..3240193) Burkholderia ambifaria MC40-6 6178199 YP_001809611.1 CDS BamMC406_2919 NC_010551.1 3240470 3240811 D KEGG: bam:Bamb_3054 hypothetical protein; hypothetical protein 3240470..3240811 Burkholderia ambifaria MC40-6 6176610 YP_001809612.1 CDS BamMC406_2920 NC_010551.1 3240860 3241387 R PFAM: Chromate transporter; KEGG: bam:Bamb_3055 chromate transporter; chromate transporter complement(3240860..3241387) Burkholderia ambifaria MC40-6 6178118 YP_001809613.1 CDS BamMC406_2921 NC_010551.1 3241384 3241998 R PFAM: Chromate transporter; KEGG: bam:Bamb_3056 chromate transporter; chromate transporter complement(3241384..3241998) Burkholderia ambifaria MC40-6 6178047 YP_001809614.1 CDS BamMC406_2922 NC_010551.1 3242095 3242979 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3242095..3242979 Burkholderia ambifaria MC40-6 6178159 YP_001809615.1 CDS BamMC406_2923 NC_010551.1 3243020 3244324 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bam:Bamb_3058 uracil-xanthine permease; uracil-xanthine permease complement(3243020..3244324) Burkholderia ambifaria MC40-6 6178133 YP_001809616.1 CDS flgL NC_010551.1 3244571 3245812 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL complement(3244571..3245812) Burkholderia ambifaria MC40-6 6178101 YP_001809617.1 CDS flgK NC_010551.1 3245835 3247832 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(3245835..3247832) Burkholderia ambifaria MC40-6 6178215 YP_001809618.1 CDS BamMC406_2926 NC_010551.1 3247991 3248746 R PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: bam:Bamb_3061 YcgR family protein; YcgR family protein complement(3247991..3248746) Burkholderia ambifaria MC40-6 6178439 YP_001809619.1 CDS flgJ NC_010551.1 3248957 3249949 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(3248957..3249949) Burkholderia ambifaria MC40-6 6178304 YP_001809620.1 CDS flgI NC_010551.1 3249950 3251134 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(3249950..3251134) Burkholderia ambifaria MC40-6 6178382 YP_001809621.1 CDS flgH NC_010551.1 3251134 3251823 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes; flagellar basal body L-ring protein complement(3251134..3251823) Burkholderia ambifaria MC40-6 6178384 YP_001809622.1 CDS flgG NC_010551.1 3251845 3252633 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(3251845..3252633) Burkholderia ambifaria MC40-6 6178350 YP_001809623.1 CDS flgF NC_010551.1 3252669 3253427 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(3252669..3253427) Burkholderia ambifaria MC40-6 6178342 YP_001809624.1 CDS flgE NC_010551.1 3253448 3254689 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(3253448..3254689) Burkholderia ambifaria MC40-6 6178351 YP_001809625.1 CDS flgD NC_010551.1 3254718 3255464 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(3254718..3255464) Burkholderia ambifaria MC40-6 6178352 YP_001809626.1 CDS flgC NC_010551.1 3255547 3255972 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(3255547..3255972) Burkholderia ambifaria MC40-6 6178307 YP_001809627.1 CDS flgB NC_010551.1 3256010 3256498 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB complement(3256010..3256498) Burkholderia ambifaria MC40-6 6178221 YP_001809628.1 CDS flgA NC_010551.1 3256704 3257960 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 3256704..3257960 Burkholderia ambifaria MC40-6 6178320 YP_001809629.1 CDS BamMC406_2937 NC_010551.1 3258079 3258408 D KEGG: bam:Bamb_3072 putative anti-sigma-28 factor, FlgM; putative anti-sigma-28 factor, FlgM 3258079..3258408 Burkholderia ambifaria MC40-6 6178237 YP_001809630.1 CDS BamMC406_2938 NC_010551.1 3258494 3258934 D PFAM: FlgN family protein; KEGG: bam:Bamb_3073 FlgN family protein; FlgN family protein 3258494..3258934 Burkholderia ambifaria MC40-6 6178389 YP_001809631.1 CDS BamMC406_2939 NC_010551.1 3259048 3260898 R PFAM: peptidase M24; KEGG: bam:Bamb_3074 peptidase M24; peptidase M24 complement(3259048..3260898) Burkholderia ambifaria MC40-6 6178567 YP_001809632.1 CDS BamMC406_2940 NC_010551.1 3261139 3261327 R hypothetical protein complement(3261139..3261327) Burkholderia ambifaria MC40-6 6178512 YP_001809633.1 CDS BamMC406_2941 NC_010551.1 3261341 3262156 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_3075 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator 3261341..3262156 Burkholderia ambifaria MC40-6 6178471 YP_001809634.1 CDS cca NC_010551.1 3262202 3263443 R catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase complement(3262202..3263443) Burkholderia ambifaria MC40-6 6178416 YP_001809635.1 CDS BamMC406_2943 NC_010551.1 3263440 3264087 R PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_3077 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(3263440..3264087) Burkholderia ambifaria MC40-6 6178482 YP_001809636.1 CDS BamMC406_2944 NC_010551.1 3264143 3265102 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: bam:Bamb_3078 NAD-dependent epimerase/dehydratase; NADH dehydrogenase (ubiquinone) complement(3264143..3265102) Burkholderia ambifaria MC40-6 6178497 YP_001809637.1 CDS BamMC406_2945 NC_010551.1 3265374 3267326 R PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_3079 lytic transglycosylase, catalytic; lytic transglycosylase complement(3265374..3267326) Burkholderia ambifaria MC40-6 6178472 YP_001809638.1 CDS BamMC406_2946 NC_010551.1 3267335 3267943 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: bam:Bamb_3080 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 3267335..3267943 Burkholderia ambifaria MC40-6 6178398 YP_001809639.1 CDS BamMC406_2947 NC_010551.1 3268012 3268524 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_3081 putative transcriptional regulator; putative transcriptional regulator complement(3268012..3268524) Burkholderia ambifaria MC40-6 6178451 YP_001809640.1 CDS BamMC406_2948 NC_010551.1 3268673 3269329 D PFAM: Allophanate hydrolase subunit 1; KEGG: bam:Bamb_3082 hypothetical protein; allophanate hydrolase subunit 1 3268673..3269329 Burkholderia ambifaria MC40-6 6178431 YP_001809641.1 CDS BamMC406_2949 NC_010551.1 3269326 3270396 D TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: bam:Bamb_3083 UreA amidolyase related protein; urea amidolyase-like protein 3269326..3270396 Burkholderia ambifaria MC40-6 6178668 YP_001809642.1 CDS BamMC406_2950 NC_010551.1 3270452 3271216 D PFAM: LamB/YcsF family protein; KEGG: bam:Bamb_3084 hypothetical protein; LamB/YcsF family protein 3270452..3271216 Burkholderia ambifaria MC40-6 6178665 YP_001809643.1 CDS BamMC406_2951 NC_010551.1 3271774 3272919 R PFAM: GumN family protein; KEGG: bam:Bamb_3085 GumN family protein; GumN family protein complement(3271774..3272919) Burkholderia ambifaria MC40-6 6178639 YP_001809644.1 CDS dppF NC_010551.1 3272912 3273928 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(3272912..3273928) Burkholderia ambifaria MC40-6 6178644 YP_001809645.1 CDS BamMC406_2953 NC_010551.1 3273925 3274923 R KEGG: bam:Bamb_3087 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(3273925..3274923) Burkholderia ambifaria MC40-6 6178548 YP_001809646.1 CDS BamMC406_2954 NC_010551.1 3274926 3275843 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3088 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3274926..3275843) Burkholderia ambifaria MC40-6 6176397 YP_001809647.1 CDS BamMC406_2955 NC_010551.1 3275848 3276858 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3089 binding-protein-dependent transport systems inner membrane component; alkaline phosphatase complement(3275848..3276858) Burkholderia ambifaria MC40-6 6177547 YP_001809648.1 CDS BamMC406_2956 NC_010551.1 3276976 3278604 R PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_3090 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(3276976..3278604) Burkholderia ambifaria MC40-6 6176399 YP_001809649.1 CDS BamMC406_2957 NC_010551.1 3278920 3280227 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_3091 general substrate transporter; general substrate transporter complement(3278920..3280227) Burkholderia ambifaria MC40-6 6177485 YP_001809650.1 CDS BamMC406_2958 NC_010551.1 3280419 3280730 R PFAM: High potential iron-sulfur protein; KEGG: bam:Bamb_3092 high potential iron-sulfur protein; high potential iron-sulfur protein complement(3280419..3280730) Burkholderia ambifaria MC40-6 6177203 YP_001809651.1 CDS BamMC406_2959 NC_010551.1 3280881 3281990 R PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_3093 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3280881..3281990) Burkholderia ambifaria MC40-6 6175966 YP_001809652.1 CDS BamMC406_2960 NC_010551.1 3282116 3283096 R PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_3094 AAA ATPase, central domain protein; ATPase central domain-containing protein complement(3282116..3283096) Burkholderia ambifaria MC40-6 6176715 YP_001809653.1 CDS BamMC406_2961 NC_010551.1 3283502 3283990 D KEGG: bam:Bamb_3095 hypothetical protein; hypothetical protein 3283502..3283990 Burkholderia ambifaria MC40-6 6177206 YP_001809654.1 CDS BamMC406_2962 NC_010551.1 3283996 3284811 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bam:Bamb_3096 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 3283996..3284811 Burkholderia ambifaria MC40-6 6176426 YP_001809655.1 CDS BamMC406_2963 NC_010551.1 3284902 3285549 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_3097 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3284902..3285549 Burkholderia ambifaria MC40-6 6177205 YP_001809656.1 CDS BamMC406_2964 NC_010551.1 3285777 3286547 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_3098 ferredoxin--NADP(+) reductase; ferredoxin--NADP(+) reductase 3285777..3286547 Burkholderia ambifaria MC40-6 6177140 YP_001809657.1 CDS BamMC406_2965 NC_010551.1 3286964 3287779 D PFAM: ATP-binding region ATPase domain protein; KEGG: bam:Bamb_3099 putative signal transduction histidine kinase; putative signal transduction histidine kinase 3286964..3287779 Burkholderia ambifaria MC40-6 6177023 YP_001809658.1 CDS BamMC406_2966 NC_010551.1 3287787 3288443 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_3100 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3287787..3288443 Burkholderia ambifaria MC40-6 6177417 YP_001809659.1 CDS BamMC406_2967 NC_010551.1 3288652 3290052 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_3101 amino acid permease-associated region; amino acid permease-associated protein 3288652..3290052 Burkholderia ambifaria MC40-6 6177386 YP_001809660.1 CDS BamMC406_2968 NC_010551.1 3290276 3291301 D PFAM: protein of unknown function DUF182; KEGG: bam:Bamb_3102 protein of unknown function DUF182; hypothetical protein 3290276..3291301 Burkholderia ambifaria MC40-6 6176102 YP_001809661.1 CDS BamMC406_2969 NC_010551.1 3291445 3292179 R PFAM: PepSY-associated TM helix domain protein; KEGG: bam:Bamb_3103 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(3291445..3292179) Burkholderia ambifaria MC40-6 6176748 YP_001809662.1 CDS BamMC406_2970 NC_010551.1 3292445 3292765 R KEGG: bam:Bamb_3104 putative flagellar protein FhlB; putative flagellar protein FhlB complement(3292445..3292765) Burkholderia ambifaria MC40-6 6177218 YP_001809663.1 CDS BamMC406_2971 NC_010551.1 3292762 3294123 R KEGG: bam:Bamb_3105 hypothetical protein; hypothetical protein complement(3292762..3294123) Burkholderia ambifaria MC40-6 6177216 YP_001809664.1 CDS BamMC406_2972 NC_010551.1 3294197 3294529 R KEGG: bam:Bamb_3106 hypothetical protein; hypothetical protein complement(3294197..3294529) Burkholderia ambifaria MC40-6 6178131 YP_001809665.1 CDS BamMC406_2973 NC_010551.1 3294526 3294960 R PFAM: flagellar protein FliS; KEGG: bam:Bamb_3107 flagellar protein FliS; flagellar protein FliS complement(3294526..3294960) Burkholderia ambifaria MC40-6 6176528 YP_001809666.1 CDS BamMC406_2974 NC_010551.1 3295107 3295466 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: bam:Bamb_3108 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE complement(3295107..3295466) Burkholderia ambifaria MC40-6 6176881 YP_001809667.1 CDS fliF NC_010551.1 3295701 3297464 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 3295701..3297464 Burkholderia ambifaria MC40-6 6176938 YP_001809668.1 CDS fliG NC_010551.1 3297454 3298449 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 3297454..3298449 Burkholderia ambifaria MC40-6 6176559 YP_001809669.1 CDS fliH NC_010551.1 3298442 3299125 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 3298442..3299125 Burkholderia ambifaria MC40-6 6176480 YP_001809670.1 CDS BamMC406_2978 NC_010551.1 3299119 3300660 D KEGG: bam:Bamb_3112 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; flagellar protein export ATPase FliI 3299119..3300660 Burkholderia ambifaria MC40-6 6177028 YP_001809671.1 CDS BamMC406_2979 NC_010551.1 3300666 3301124 D TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: bam:Bamb_3113 flagellar export protein FliJ; flagellar export protein FliJ 3300666..3301124 Burkholderia ambifaria MC40-6 6176484 YP_001809672.1 CDS BamMC406_2980 NC_010551.1 3301156 3302523 D PFAM: flagellar hook-length control protein; KEGG: bam:Bamb_3114 flagellar hook-length control protein; flagellar hook-length control protein 3301156..3302523 Burkholderia ambifaria MC40-6 6176805 YP_001809673.1 CDS BamMC406_2981 NC_010551.1 3302557 3304197 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bam:Bamb_3115 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(3302557..3304197) Burkholderia ambifaria MC40-6 6177294 YP_001809674.1 CDS BamMC406_2982 NC_010551.1 3304918 3306360 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3118 aldehyde dehydrogenase; aldehyde dehydrogenase 3304918..3306360 Burkholderia ambifaria MC40-6 6176436 YP_001809675.1 CDS BamMC406_2983 NC_010551.1 3306312 3306404 R hypothetical protein complement(3306312..3306404) Burkholderia ambifaria MC40-6 6176759 YP_001809676.1 CDS BamMC406_2984 NC_010551.1 3306443 3307474 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(3306443..3307474) Burkholderia ambifaria MC40-6 6176440 YP_001809677.1 CDS BamMC406_2985 NC_010551.1 3307524 3307736 R KEGG: bam:Bamb_3120 hypothetical protein; hypothetical protein complement(3307524..3307736) Burkholderia ambifaria MC40-6 6177287 YP_001809678.1 CDS BamMC406_2986 NC_010551.1 3308466 3309347 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_3123 protein of unknown function DUF6, transmembrane; hypothetical protein 3308466..3309347 Burkholderia ambifaria MC40-6 6176730 YP_001809679.1 CDS BamMC406_2987 NC_010551.1 3309645 3309830 D KEGG: bam:Bamb_3124 hypothetical protein; hypothetical protein 3309645..3309830 Burkholderia ambifaria MC40-6 6177183 YP_001809680.1 CDS BamMC406_2988 NC_010551.1 3309942 3310985 R PFAM: aldo/keto reductase; KEGG: bam:Bamb_3125 aldo/keto reductase; aldo/keto reductase complement(3309942..3310985) Burkholderia ambifaria MC40-6 6176425 YP_001809681.1 CDS BamMC406_2989 NC_010551.1 3311170 3311376 D KEGG: bam:Bamb_3126 hypothetical protein; hypothetical protein 3311170..3311376 Burkholderia ambifaria MC40-6 6176552 YP_001809682.1 CDS BamMC406_2990 NC_010551.1 3311543 3312316 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: bam:Bamb_3127 phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase complement(3311543..3312316) Burkholderia ambifaria MC40-6 6176937 YP_001809683.1 CDS BamMC406_2991 NC_010551.1 3312670 3313011 D KEGG: bam:Bamb_3128 hypothetical protein; hypothetical protein 3312670..3313011 Burkholderia ambifaria MC40-6 6176023 YP_001809684.1 CDS BamMC406_2992 NC_010551.1 3313122 3314309 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(3313122..3314309) Burkholderia ambifaria MC40-6 6176500 YP_001809685.1 CDS BamMC406_2993 NC_010551.1 3314575 3315459 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 3314575..3315459 Burkholderia ambifaria MC40-6 6177208 YP_001809686.1 CDS dapF NC_010551.1 3315713 3316561 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3315713..3316561 Burkholderia ambifaria MC40-6 6176414 YP_001809687.1 CDS BamMC406_2995 NC_010551.1 3316599 3317324 D PFAM: protein of unknown function DUF484; KEGG: bam:Bamb_3132 protein of unknown function DUF484; hypothetical protein 3316599..3317324 Burkholderia ambifaria MC40-6 6176501 YP_001809688.1 CDS xerC NC_010551.1 3317338 3318258 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 3317338..3318258 Burkholderia ambifaria MC40-6 6176434 YP_001809689.1 CDS BamMC406_2997 NC_010551.1 3318335 3319549 D SMART: PUA domain containing protein; KEGG: bam:Bamb_3134 PUA domain containing protein; PUA domain-containing protein 3318335..3319549 Burkholderia ambifaria MC40-6 6177352 YP_001809690.1 CDS BamMC406_2998 NC_010551.1 3319655 3320818 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bam:Bamb_3135 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 3319655..3320818 Burkholderia ambifaria MC40-6 6176499 YP_001809691.1 CDS BamMC406_2999 NC_010551.1 3321310 3321726 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: bam:Bamb_3137 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 3321310..3321726 Burkholderia ambifaria MC40-6 6176413 YP_001809692.1 CDS BamMC406_3000 NC_010551.1 3321963 3322499 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 3321963..3322499 Burkholderia ambifaria MC40-6 6176047 YP_001809693.1 CDS hslU NC_010551.1 3322510 3323853 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 3322510..3323853 Burkholderia ambifaria MC40-6 6177038 YP_001809694.1 CDS BamMC406_3002 NC_010551.1 3324022 3324564 R PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: bam:Bamb_3140 response regulator receiver protein; two component Fis family transcriptional regulator complement(3324022..3324564) Burkholderia ambifaria MC40-6 6177086 YP_001809695.1 CDS BamMC406_3003 NC_010551.1 3324578 3325984 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_3141 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3324578..3325984) Burkholderia ambifaria MC40-6 6177374 YP_001809696.1 CDS BamMC406_3004 NC_010551.1 3326042 3326680 D KEGG: bpm:BURPS1710b_A2285 hypothetical protein; hypothetical protein 3326042..3326680 Burkholderia ambifaria MC40-6 6176465 YP_001809697.1 CDS BamMC406_3005 NC_010551.1 3326638 3327537 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 3326638..3327537 Burkholderia ambifaria MC40-6 6176474 YP_001809698.1 CDS BamMC406_3006 NC_010551.1 3327534 3328325 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_3144 pyrimidine 5'-nucleotidase; pyrimidine 5'-nucleotidase 3327534..3328325 Burkholderia ambifaria MC40-6 6176834 YP_001809699.1 CDS slmA NC_010551.1 3328292 3328957 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3328292..3328957 Burkholderia ambifaria MC40-6 6179095 YP_001809700.1 CDS BamMC406_3008 NC_010551.1 3329037 3331700 R KEGG: bte:BTH_II0140 ClpA/B type protease; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase complement(3329037..3331700) Burkholderia ambifaria MC40-6 6179090 YP_001809701.1 CDS BamMC406_3009 NC_010551.1 3332219 3333238 D KEGG: bps:BPSS0115 hypothetical protein; hypothetical protein 3332219..3333238 Burkholderia ambifaria MC40-6 6179086 YP_001809702.1 CDS BamMC406_3010 NC_010551.1 3333225 3334079 D PFAM: virulence protein SciE type; KEGG: bpm:BURPS1710b_A1623 SciE protein; virulence protein SciE type 3333225..3334079 Burkholderia ambifaria MC40-6 6179082 YP_001809703.1 CDS BamMC406_3011 NC_010551.1 3334063 3334584 D TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: bte:BTH_II0137 protein of unknown function (DUF1316) subfamily, putative; type VI secretion system lysozyme-like protein 3334063..3334584 Burkholderia ambifaria MC40-6 6179079 YP_001809704.1 CDS BamMC406_3012 NC_010551.1 3334586 3336466 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bte:BTH_II0136 bacterial protein of unknown function (DUF879) superfamily; type VI secretion protein 3334586..3336466 Burkholderia ambifaria MC40-6 6179071 YP_001809705.1 CDS BamMC406_3013 NC_010551.1 3336470 3337531 D TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: bte:BTH_II0135 putative cytoplasmic protein; type VI secretion protein 3336470..3337531 Burkholderia ambifaria MC40-6 6179067 YP_001809706.1 CDS BamMC406_3014 NC_010551.1 3337528 3338586 D PFAM: ImpA domain protein; KEGG: bpd:BURPS668_A0170 ImpA-related N-terminal family protein; ImpA domain-containing protein 3337528..3338586 Burkholderia ambifaria MC40-6 6179063 YP_001809707.1 CDS BamMC406_3015 NC_010551.1 3338628 3339659 D PFAM: Fimbrial protein; KEGG: bte:BTH_II0133 fimbrial protein subfamily, putative; fimbrial protein 3338628..3339659 Burkholderia ambifaria MC40-6 6179055 YP_001809708.1 CDS BamMC406_3016 NC_010551.1 3339699 3341054 D KEGG: bpm:BURPS1710b_A1616 hypothetical protein; hypothetical protein 3339699..3341054 Burkholderia ambifaria MC40-6 6179044 YP_001809709.1 CDS BamMC406_3017 NC_010551.1 3341168 3344617 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: bpd:BURPS668_A0168 rhs1 protein; YD repeat-containing protein complement(3341168..3344617) Burkholderia ambifaria MC40-6 6179041 YP_001809710.1 CDS BamMC406_3018 NC_010551.1 3344638 3344904 R PFAM: PAAR repeat-containing protein; KEGG: bte:BTH_II0130 rhs family protein; PAAR repeat-containing protein complement(3344638..3344904) Burkholderia ambifaria MC40-6 6179036 YP_001809711.1 CDS BamMC406_3019 NC_010551.1 3344989 3348135 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bpd:BURPS668_A0166 rhs element Vgr protein; ImpA family type VI secretion-associated protein complement(3344989..3348135) Burkholderia ambifaria MC40-6 6179032 YP_001809712.1 CDS BamMC406_3020 NC_010551.1 3348242 3348736 R KEGG: bpd:BURPS668_A0165 hypothetical protein; hypothetical protein complement(3348242..3348736) Burkholderia ambifaria MC40-6 6179023 YP_001809713.1 CDS BamMC406_3021 NC_010551.1 3348786 3349571 R KEGG: stm:STM0286 putative cytoplasmic protein; putative cytoplasmic protein complement(3348786..3349571) Burkholderia ambifaria MC40-6 6179019 YP_001809714.1 CDS BamMC406_3022 NC_010551.1 3349580 3353488 R TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bte:BTH_II0127 lipoprotein, putative; type VI secretion protein IcmF complement(3349580..3353488) Burkholderia ambifaria MC40-6 6179018 YP_001809715.1 CDS BamMC406_3023 NC_010551.1 3353503 3354807 R TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bte:BTH_II0126 OmpA domain protein; hypothetical protein complement(3353503..3354807) Burkholderia ambifaria MC40-6 6179016 YP_001809716.1 CDS BamMC406_3024 NC_010551.1 3354804 3356153 R TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bpd:BURPS668_A0161 hypothetical protein; type VI secretion protein complement(3354804..3356153) Burkholderia ambifaria MC40-6 6179010 YP_001809717.1 CDS BamMC406_3025 NC_010551.1 3356155 3356697 R KEGG: bte:BTH_II0124 lipoprotein, putative; putative lipoprotein complement(3356155..3356697) Burkholderia ambifaria MC40-6 6179005 YP_001809718.1 CDS BamMC406_3026 NC_010551.1 3356832 3357314 R PFAM: protein of unknown function DUF796; KEGG: bpd:BURPS668_A0159 SciM protein; hypothetical protein complement(3356832..3357314) Burkholderia ambifaria MC40-6 6178999 YP_001809719.1 CDS BamMC406_3027 NC_010551.1 3357516 3359015 R TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: bte:BTH_II0122 protein of unknown function (DUF877) superfamily; EvpB family type VI secretion protein complement(3357516..3359015) Burkholderia ambifaria MC40-6 6178981 YP_001809720.1 CDS BamMC406_3028 NC_010551.1 3359063 3359599 R TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: bte:BTH_II0121 protein of unknown function (DUF770) superfamily; type VI secretion protein complement(3359063..3359599) Burkholderia ambifaria MC40-6 6178976 YP_001809721.1 CDS BamMC406_3029 NC_010551.1 3359955 3361622 R PFAM: OmpA/MotB domain protein; KEGG: bpd:BURPS668_A0155 OmpA family protein; OmpA/MotB domain-containing protein complement(3359955..3361622) Burkholderia ambifaria MC40-6 6178975 YP_001809722.1 CDS BamMC406_3030 NC_010551.1 3361619 3362323 R KEGG: bpl:BURPS1106A_A0130 hypothetical protein; hypothetical protein complement(3361619..3362323) Burkholderia ambifaria MC40-6 6178974 YP_001809723.1 CDS BamMC406_3031 NC_010551.1 3362358 3362921 R PFAM: Fimbrial protein; KEGG: bpd:BURPS668_A0153 major fimbrial subunit protein; fimbrial protein complement(3362358..3362921) Burkholderia ambifaria MC40-6 6178969 YP_001809724.1 CDS BamMC406_3032 NC_010551.1 3362962 3365754 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bte:BTH_II0117 outer membrane usher protein; fimbrial biogenesis outer membrane usher protein complement(3362962..3365754) Burkholderia ambifaria MC40-6 6178924 YP_001809725.1 CDS BamMC406_3033 NC_010551.1 3365791 3366522 R PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: bps:BPSS0092 fimbria-related chaperone; Pili assembly chaperone, N-terminal complement(3365791..3366522) Burkholderia ambifaria MC40-6 6178774 YP_001809726.1 CDS BamMC406_3034 NC_010551.1 3366612 3367154 R PFAM: Fimbrial protein; KEGG: bpd:BURPS668_A0150 fimbrial protein; fimbrial protein complement(3366612..3367154) Burkholderia ambifaria MC40-6 6178769 YP_001809727.1 CDS BamMC406_3035 NC_010551.1 3367474 3369249 R KEGG: gga:396544 nascent polypeptide-associated complex alpha subunit; hypothetical protein complement(3367474..3369249) Burkholderia ambifaria MC40-6 6178745 YP_001809728.1 CDS BamMC406_3036 NC_010551.1 3369727 3372714 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: bvi:Bcep1808_3182 outer membrane autotransporter barrel domain; outer membrane autotransporter 3369727..3372714 Burkholderia ambifaria MC40-6 6178726 YP_001809729.1 CDS metX NC_010551.1 3373016 3374161 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 3373016..3374161 Burkholderia ambifaria MC40-6 6178717 YP_001809730.1 CDS BamMC406_3038 NC_010551.1 3374158 3374766 D TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: bch:Bcen2424_3100 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW 3374158..3374766 Burkholderia ambifaria MC40-6 6178711 YP_001809731.1 CDS BamMC406_3039 NC_010551.1 3374884 3376305 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3156 major facilitator superfamily MFS_1; major facilitator transporter 3374884..3376305 Burkholderia ambifaria MC40-6 6178709 YP_001809732.1 CDS BamMC406_3040 NC_010551.1 3376295 3377329 D PFAM: peptidase M48 Ste24p; KEGG: bam:Bamb_3157 peptidase M48, Ste24p; peptidase M48 Ste24p 3376295..3377329 Burkholderia ambifaria MC40-6 6178682 YP_001809733.1 CDS BamMC406_3041 NC_010551.1 3377382 3378326 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: bam:Bamb_3158 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3377382..3378326) Burkholderia ambifaria MC40-6 6178672 YP_001809734.1 CDS BamMC406_3042 NC_010551.1 3378555 3379607 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3159 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3378555..3379607 Burkholderia ambifaria MC40-6 6178652 YP_001809735.1 CDS BamMC406_3043 NC_010551.1 3379719 3380492 R KEGG: bam:Bamb_3160 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(3379719..3380492) Burkholderia ambifaria MC40-6 6178642 YP_001809736.1 CDS BamMC406_3044 NC_010551.1 3380543 3381382 R PFAM: protein of unknown function DUF344; KEGG: bam:Bamb_3161 protein of unknown function DUF344; hypothetical protein complement(3380543..3381382) Burkholderia ambifaria MC40-6 6178602 YP_001809737.1 CDS gatB NC_010551.1 3381509 3382981 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(3381509..3382981) Burkholderia ambifaria MC40-6 6178596 YP_001809738.1 CDS gatA NC_010551.1 3382986 3384476 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(3382986..3384476) Burkholderia ambifaria MC40-6 6178590 YP_001809739.1 CDS gatC NC_010551.1 3384543 3384842 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(3384543..3384842) Burkholderia ambifaria MC40-6 6178588 YP_001809740.1 CDS BamMC406_3048 NC_010551.1 3385210 3386253 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3385210..3386253 Burkholderia ambifaria MC40-6 6178580 YP_001809741.1 CDS BamMC406_3049 NC_010551.1 3386393 3387463 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3386393..3387463 Burkholderia ambifaria MC40-6 6178571 YP_001809742.1 CDS BamMC406_3050 NC_010551.1 3387460 3387972 D TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: bam:Bamb_3167 rod shape-determining protein MreD; rod shape-determining protein MreD 3387460..3387972 Burkholderia ambifaria MC40-6 6178550 YP_001809743.1 CDS BamMC406_3051 NC_010551.1 3388091 3390361 D KEGG: bam:Bamb_3168 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3388091..3390361 Burkholderia ambifaria MC40-6 6178521 YP_001809744.1 CDS BamMC406_3052 NC_010551.1 3390373 3391521 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: bam:Bamb_3169 rod shape-determining protein RodA; rod shape-determining protein RodA 3390373..3391521 Burkholderia ambifaria MC40-6 6178505 YP_001809745.1 CDS BamMC406_3053 NC_010551.1 3391628 3392404 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: bam:Bamb_3170 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(3391628..3392404) Burkholderia ambifaria MC40-6 6178412 YP_001809746.1 CDS BamMC406_3054 NC_010551.1 3392401 3393186 R PFAM: HpcH/HpaI aldolase; KEGG: bam:Bamb_3171 2-dehydro-3-deoxyglucarate aldolase; 2-dehydro-3-deoxyglucarate aldolase complement(3392401..3393186) Burkholderia ambifaria MC40-6 6178324 YP_001809747.1 CDS BamMC406_3055 NC_010551.1 3393433 3393885 R TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: bam:Bamb_3172 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; queuosine biosynthesis protein QueD complement(3393433..3393885) Burkholderia ambifaria MC40-6 6178301 YP_001809748.1 CDS BamMC406_3056 NC_010551.1 3393904 3394536 R KEGG: bam:Bamb_3173 organic radical activating enzyme-like protein; organic radical activating enzyme-like protein complement(3393904..3394536) Burkholderia ambifaria MC40-6 6178258 YP_001809749.1 CDS BamMC406_3057 NC_010551.1 3394611 3395345 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bam:Bamb_3174 ExsB protein; exsB protein complement(3394611..3395345) Burkholderia ambifaria MC40-6 6178253 YP_001809750.1 CDS BamMC406_3058 NC_010551.1 3395834 3396535 R PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: bam:Bamb_3175 response regulator receiver protein; two component Fis family transcriptional regulator complement(3395834..3396535) Burkholderia ambifaria MC40-6 6178205 YP_001809751.1 CDS BamMC406_3059 NC_010551.1 3396536 3398938 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: bam:Bamb_3176 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(3396536..3398938) Burkholderia ambifaria MC40-6 6178202 YP_001809752.1 CDS BamMC406_3060 NC_010551.1 3398940 3399533 R KEGG: bam:Bamb_3177 hypothetical protein; hypothetical protein complement(3398940..3399533) Burkholderia ambifaria MC40-6 6178194 YP_001809753.1 CDS BamMC406_3061 NC_010551.1 3399530 3400918 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: bam:Bamb_3178 sun protein; sun protein complement(3399530..3400918) Burkholderia ambifaria MC40-6 6178182 YP_001809754.1 CDS BamMC406_3062 NC_010551.1 3401095 3401952 R PFAM: peptidase M48 Ste24p; KEGG: bam:Bamb_3179 heat shock protein HtpX; M48 family peptidase complement(3401095..3401952) Burkholderia ambifaria MC40-6 6178178 YP_001809755.1 CDS BamMC406_3063 NC_010551.1 3402051 3402692 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_3180 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3402051..3402692) Burkholderia ambifaria MC40-6 6178175 YP_001809756.1 CDS fmt NC_010551.1 3402803 3403786 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(3402803..3403786) Burkholderia ambifaria MC40-6 6178172 YP_001809757.1 CDS def NC_010551.1 3403820 3404323 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(3403820..3404323) Burkholderia ambifaria MC40-6 6178171 YP_001809758.1 CDS BamMC406_3066 NC_010551.1 3404555 3405823 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: bam:Bamb_3183 DNA protecting protein DprA; DNA protecting protein DprA 3404555..3405823 Burkholderia ambifaria MC40-6 6178169 YP_001809759.1 CDS BamMC406_3067 NC_010551.1 3405860 3406240 D PFAM: Thioredoxin domain; KEGG: bam:Bamb_3184 thioredoxin domain; thioredoxin domain-containing protein 3405860..3406240 Burkholderia ambifaria MC40-6 6178160 YP_001809760.1 CDS BamMC406_3068 NC_010551.1 3406432 3409029 D decatenates replicating daughter chromosomes; DNA topoisomerase III 3406432..3409029 Burkholderia ambifaria MC40-6 6178157 YP_001809761.1 CDS BamMC406_3069 NC_010551.1 3409164 3410213 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3186 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3409164..3410213) Burkholderia ambifaria MC40-6 6178153 YP_001809762.1 CDS BamMC406_3070 NC_010551.1 3410644 3411657 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_3187 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 3410644..3411657 Burkholderia ambifaria MC40-6 6178136 YP_001809763.1 CDS BamMC406_3071 NC_010551.1 3411706 3412572 R PFAM: Patatin; KEGG: bam:Bamb_3188 patatin; patatin complement(3411706..3412572) Burkholderia ambifaria MC40-6 6178134 YP_001809764.1 CDS BamMC406_3072 NC_010551.1 3412581 3412985 R PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_3189 hypothetical protein; thioesterase superfamily protein complement(3412581..3412985) Burkholderia ambifaria MC40-6 6178124 YP_001809765.1 CDS BamMC406_3073 NC_010551.1 3413553 3414491 D KEGG: bam:Bamb_3190 hypothetical protein; hypothetical protein 3413553..3414491 Burkholderia ambifaria MC40-6 6178098 YP_001809766.1 CDS BamMC406_3074 NC_010551.1 3414530 3415144 R PFAM: protein of unknown function DUF1470; KEGG: bam:Bamb_3191 protein of unknown function DUF1470; hypothetical protein complement(3414530..3415144) Burkholderia ambifaria MC40-6 6178095 YP_001809767.1 CDS BamMC406_3075 NC_010551.1 3415226 3416029 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_3192 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3415226..3416029 Burkholderia ambifaria MC40-6 6178087 YP_001809768.1 CDS BamMC406_3076 NC_010551.1 3416063 3417517 R TIGRFAM: phosphonoacetaldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3193 aldehyde dehydrogenase; phosphonoacetaldehyde dehydrogenase complement(3416063..3417517) Burkholderia ambifaria MC40-6 6178082 YP_001809769.1 CDS BamMC406_3077 NC_010551.1 3417546 3418859 R TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bam:Bamb_3194 phosphonoacetate hydrolase; phosphonoacetate hydrolase complement(3417546..3418859) Burkholderia ambifaria MC40-6 6178062 YP_001809770.1 CDS BamMC406_3079 NC_010551.1 3419331 3420719 D TIGRFAM: aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_3196 FAD dependent oxidoreductase; aminophosphonate oxidoreductase 3419331..3420719 Burkholderia ambifaria MC40-6 6178050 YP_001809771.1 CDS BamMC406_3080 NC_010551.1 3421170 3421535 D KEGG: sfr:Sfri_0291 hypothetical protein; hypothetical protein 3421170..3421535 Burkholderia ambifaria MC40-6 6178036 YP_001809772.1 CDS BamMC406_3081 NC_010551.1 3421545 3421772 D KEGG: sfr:Sfri_0292 hypothetical protein; hypothetical protein 3421545..3421772 Burkholderia ambifaria MC40-6 6178027 YP_001809773.1 CDS BamMC406_3082 NC_010551.1 3422076 3422801 R TIGRFAM: phosphonate utilization associated transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_3197 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3422076..3422801) Burkholderia ambifaria MC40-6 6178024 YP_001809774.1 CDS BamMC406_3083 NC_010551.1 3422963 3425134 R TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; KEGG: bam:Bamb_3198 phospholipase C; phospholipase C, phosphocholine-specific complement(3422963..3425134) Burkholderia ambifaria MC40-6 6178012 YP_001809775.1 CDS BamMC406_3084 NC_010551.1 3425363 3426280 D TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3199 transcriptional regulator, LysR family; LysR family transcriptional regulator 3425363..3426280 Burkholderia ambifaria MC40-6 6178010 YP_001809776.1 CDS BamMC406_3085 NC_010551.1 3426401 3428041 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: bam:Bamb_3200 L-lactate transport; L-lactate transport complement(3426401..3428041) Burkholderia ambifaria MC40-6 6178006 YP_001809777.1 CDS BamMC406_3086 NC_010551.1 3428478 3428795 D KEGG: bam:Bamb_3201 hypothetical protein; hypothetical protein 3428478..3428795 Burkholderia ambifaria MC40-6 6177999 YP_001809778.1 CDS BamMC406_3087 NC_010551.1 3428885 3430498 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(3428885..3430498) Burkholderia ambifaria MC40-6 6177992 YP_001809779.1 CDS BamMC406_3088 NC_010551.1 3430993 3431967 R PFAM: HhH-GPD family protein; AlkA domain protein; KEGG: bam:Bamb_3204 AlkA domain protein; alcohol dehydrogenase complement(3430993..3431967) Burkholderia ambifaria MC40-6 6177988 YP_001809780.1 CDS BamMC406_3089 NC_010551.1 3431964 3433055 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bam:Bamb_3205 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3431964..3433055) Burkholderia ambifaria MC40-6 6177981 YP_001809781.1 CDS BamMC406_3090 NC_010551.1 3433481 3433894 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_3206 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3433481..3433894 Burkholderia ambifaria MC40-6 6177978 YP_001809782.1 CDS BamMC406_3091 NC_010551.1 3433905 3434459 R PFAM: YaeQ family protein; KEGG: bam:Bamb_3207 YaeQ family protein; YaeQ family protein complement(3433905..3434459) Burkholderia ambifaria MC40-6 6177975 YP_001809783.1 CDS BamMC406_3092 NC_010551.1 3434637 3434984 R KEGG: bam:Bamb_3208 hypothetical protein; hypothetical protein complement(3434637..3434984) Burkholderia ambifaria MC40-6 6177971 YP_001809784.1 CDS BamMC406_3093 NC_010551.1 3435481 3436023 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_3209 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3435481..3436023) Burkholderia ambifaria MC40-6 6177968 YP_001809785.1 CDS BamMC406_3094 NC_010551.1 3436174 3436344 D KEGG: bam:Bamb_3210 hypothetical protein; hypothetical protein 3436174..3436344 Burkholderia ambifaria MC40-6 6177967 YP_001809786.1 CDS BamMC406_3095 NC_010551.1 3436459 3436707 D KEGG: bam:Bamb_3211 hypothetical protein; hypothetical protein 3436459..3436707 Burkholderia ambifaria MC40-6 6177966 YP_001809787.1 CDS BamMC406_3096 NC_010551.1 3436818 3438176 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bam:Bamb_3212 diguanylate cyclase; diguanylate cyclase 3436818..3438176 Burkholderia ambifaria MC40-6 6177954 YP_001809788.1 CDS trmE NC_010551.1 3438524 3439918 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(3438524..3439918) Burkholderia ambifaria MC40-6 6177930 YP_001809789.1 CDS BamMC406_3098 NC_010551.1 3440256 3440693 D KEGG: bam:Bamb_3214 hypothetical protein; hypothetical protein 3440256..3440693 Burkholderia ambifaria MC40-6 6177923 YP_001809790.1 CDS BamMC406_3099 NC_010551.1 3440838 3442502 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(3440838..3442502) Burkholderia ambifaria MC40-6 6177890 YP_001809791.1 CDS BamMC406_3100 NC_010551.1 3442511 3442777 R PFAM: protein of unknown function DUF37; KEGG: bam:Bamb_3216 hypothetical protein; hypothetical protein complement(3442511..3442777) Burkholderia ambifaria MC40-6 6177886 YP_001809792.1 CDS BamMC406_3101 NC_010551.1 3442853 3443158 R KEGG: bam:Bamb_3217 ribonuclease P protein component; ribonuclease P protein component complement(3442853..3443158) Burkholderia ambifaria MC40-6 6177881 YP_001809793.1 CDS rpmH NC_010551.1 3443330 3443464 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3443330..3443464) Burkholderia ambifaria MC40-6 6177870 YP_001809794.1 CDS BamMC406_3103 NC_010552.1 280 639 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: bam:Bamb_4964 arsenate reductase; arsenate reductase complement(280..639) Burkholderia ambifaria MC40-6 6181263 YP_001809795.1 CDS BamMC406_3104 NC_010552.1 934 1056 D hypothetical protein 934..1056 Burkholderia ambifaria MC40-6 6180857 YP_001809796.1 CDS BamMC406_3105 NC_010552.1 1401 1505 R hypothetical protein complement(1401..1505) Burkholderia ambifaria MC40-6 6180858 YP_001809797.1 CDS BamMC406_3106 NC_010552.1 1638 2300 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bam:Bamb_4965 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1638..2300 Burkholderia ambifaria MC40-6 6180835 YP_001809798.1 CDS BamMC406_3107 NC_010552.1 2324 3385 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: bam:Bamb_4966 ParB-like partition proteins; parB-like partition protein 2324..3385 Burkholderia ambifaria MC40-6 6181425 YP_001809799.1 CDS BamMC406_3108 NC_010552.1 3477 4841 R KEGG: bam:Bamb_4967 hypothetical protein; hypothetical protein complement(3477..4841) Burkholderia ambifaria MC40-6 6181426 YP_001809800.1 CDS BamMC406_3109 NC_010552.1 4890 5750 D KEGG: bcn:Bcen_5163 hypothetical protein; hypothetical protein 4890..5750 Burkholderia ambifaria MC40-6 6181427 YP_001809801.1 CDS BamMC406_3111 NC_010552.1 6663 7844 D KEGG: bam:Bamb_4968 hypothetical protein; hypothetical protein 6663..7844 Burkholderia ambifaria MC40-6 6179185 YP_001809802.1 CDS BamMC406_3112 NC_010552.1 7985 8998 R PFAM: integrase family protein; KEGG: bam:Bamb_4969 phage integrase family protein; integrase family protein complement(7985..8998) Burkholderia ambifaria MC40-6 6181209 YP_001809803.1 CDS BamMC406_3113 NC_010552.1 9108 9485 R KEGG: bam:Bamb_4970 hypothetical protein; hypothetical protein complement(9108..9485) Burkholderia ambifaria MC40-6 6181210 YP_001809804.1 CDS BamMC406_3114 NC_010552.1 9613 10224 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_4971 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator complement(9613..10224) Burkholderia ambifaria MC40-6 6181073 YP_001809805.1 CDS BamMC406_3115 NC_010552.1 10386 11585 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 10386..11585 Burkholderia ambifaria MC40-6 6181074 YP_001809806.1 CDS tdh NC_010552.1 11599 12627 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 11599..12627 Burkholderia ambifaria MC40-6 6181075 YP_001809807.1 CDS BamMC406_3117 NC_010552.1 13344 13958 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_4974 transcriptional regulator, TetR family; TetR family transcriptional regulator 13344..13958 Burkholderia ambifaria MC40-6 6181386 YP_001809808.1 CDS BamMC406_3118 NC_010552.1 14014 14493 D PFAM: protein of unknown function DUF1348; KEGG: bch:Bcen2424_5705 protein of unknown function DUF1348; hypothetical protein 14014..14493 Burkholderia ambifaria MC40-6 6181387 YP_001809809.1 CDS BamMC406_3119 NC_010552.1 14993 16078 R KEGG: bam:Bamb_4976 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(14993..16078) Burkholderia ambifaria MC40-6 6181388 YP_001809810.1 CDS BamMC406_3120 NC_010552.1 16127 17119 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4977 transcriptional regulator, LysR family; LysR family transcriptional regulator 16127..17119 Burkholderia ambifaria MC40-6 6180492 YP_001809811.1 CDS BamMC406_3121 NC_010552.1 17280 18254 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(17280..18254) Burkholderia ambifaria MC40-6 6180493 YP_001809812.1 CDS BamMC406_3122 NC_010552.1 18347 19231 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4979 transcriptional regulator, LysR family; LysR family transcriptional regulator 18347..19231 Burkholderia ambifaria MC40-6 6180494 YP_001809813.1 CDS BamMC406_3123 NC_010552.1 19387 19851 R KEGG: bam:Bamb_4980 hypothetical protein; hypothetical protein complement(19387..19851) Burkholderia ambifaria MC40-6 6180061 YP_001809814.1 CDS BamMC406_3124 NC_010552.1 19912 21129 R PFAM: Patatin; KEGG: bam:Bamb_4981 patatin; patatin complement(19912..21129) Burkholderia ambifaria MC40-6 6180062 YP_001809815.1 CDS BamMC406_3125 NC_010552.1 21260 22045 R catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase complement(21260..22045) Burkholderia ambifaria MC40-6 6180063 YP_001809816.1 CDS BamMC406_3126 NC_010552.1 22097 22837 R converts acetoacetate to acetone and carbon dioxide; acetoacetate decarboxylase complement(22097..22837) Burkholderia ambifaria MC40-6 6179486 YP_001809817.1 CDS BamMC406_3127 NC_010552.1 23281 23862 D PFAM: phosphoesterase PA-phosphatase related; KEGG: bam:Bamb_4984 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 23281..23862 Burkholderia ambifaria MC40-6 6179487 YP_001809818.1 CDS BamMC406_3128 NC_010552.1 23898 24122 R KEGG: bam:Bamb_4985 hypothetical protein; hypothetical protein complement(23898..24122) Burkholderia ambifaria MC40-6 6179488 YP_001809819.1 CDS BamMC406_3129 NC_010552.1 24242 25063 R PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: bam:Bamb_4986 FAD-binding 9, siderophore-interacting domain protein; FAD-binding 9 siderophore-interacting domain-containing protein complement(24242..25063) Burkholderia ambifaria MC40-6 6180907 YP_001809820.1 CDS BamMC406_3130 NC_010552.1 25102 25815 R PFAM: transcriptional regulator PadR family protein; KEGG: bam:Bamb_4987 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator complement(25102..25815) Burkholderia ambifaria MC40-6 6180908 YP_001809821.1 CDS BamMC406_3131 NC_010552.1 26621 27622 D PFAM: Forkhead-associated protein; KEGG: bam:Bamb_4988 FHA domain containing protein; FHA domain-containing protein 26621..27622 Burkholderia ambifaria MC40-6 6180909 YP_001809822.1 CDS BamMC406_3132 NC_010552.1 27619 31668 D PFAM: protein kinase; Tetratricopeptide TPR_4; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bam:Bamb_4989 serine/threonine protein kinase; serine/threonine protein kinase 27619..31668 Burkholderia ambifaria MC40-6 6181351 YP_001809823.1 CDS BamMC406_3133 NC_010552.1 31702 32046 D KEGG: bam:Bamb_4990 hypothetical protein; hypothetical protein 31702..32046 Burkholderia ambifaria MC40-6 6181352 YP_001809824.1 CDS BamMC406_3134 NC_010552.1 32063 32425 D KEGG: bam:Bamb_4991 hypothetical protein; hypothetical protein 32063..32425 Burkholderia ambifaria MC40-6 6181353 YP_001809825.1 CDS BamMC406_3135 NC_010552.1 32520 34757 D PFAM: protein of unknown function DUF181; KEGG: bam:Bamb_4992 hypothetical protein; hypothetical protein 32520..34757 Burkholderia ambifaria MC40-6 6181482 YP_001809826.1 CDS BamMC406_3136 NC_010552.1 34878 35453 R KEGG: bam:Bamb_4993 hypothetical protein; hypothetical protein complement(34878..35453) Burkholderia ambifaria MC40-6 6181483 YP_001809827.1 CDS BamMC406_3137 NC_010552.1 35725 36675 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_4995 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(35725..36675) Burkholderia ambifaria MC40-6 6181484 YP_001809828.1 CDS BamMC406_3138 NC_010552.1 37061 38659 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: bam:Bamb_4997 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 37061..38659 Burkholderia ambifaria MC40-6 6180669 YP_001809829.1 CDS BamMC406_3139 NC_010552.1 38701 40188 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4998 aldehyde dehydrogenase; aldehyde dehydrogenase 38701..40188 Burkholderia ambifaria MC40-6 6180670 YP_001809830.1 CDS BamMC406_3140 NC_010552.1 40258 41349 R KEGG: bam:Bamb_4999 outer membrane protein (porin); outer membrane porin complement(40258..41349) Burkholderia ambifaria MC40-6 6180671 YP_001809831.1 CDS BamMC406_3141 NC_010552.1 41528 42250 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B3149 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(41528..42250) Burkholderia ambifaria MC40-6 6180114 YP_001809832.1 CDS BamMC406_3142 NC_010552.1 42228 43349 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_5001 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(42228..43349) Burkholderia ambifaria MC40-6 6180115 YP_001809833.1 CDS BamMC406_3143 NC_010552.1 43351 44652 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5002 major facilitator superfamily MFS_1; major facilitator transporter complement(43351..44652) Burkholderia ambifaria MC40-6 6180116 YP_001809834.1 CDS BamMC406_3144 NC_010552.1 44671 45204 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_5003 cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein complement(44671..45204) Burkholderia ambifaria MC40-6 6179285 YP_001809835.1 CDS BamMC406_3145 NC_010552.1 45392 46357 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5004 transcriptional regulator, AraC family; AraC family transcriptional regulator 45392..46357 Burkholderia ambifaria MC40-6 6179286 YP_001809836.1 CDS BamMC406_3146 NC_010552.1 46561 47508 R PFAM: aldo/keto reductase; KEGG: bam:Bamb_5005 aldo/keto reductase; aldo/keto reductase complement(46561..47508) Burkholderia ambifaria MC40-6 6179287 YP_001809837.1 CDS BamMC406_3147 NC_010552.1 47883 48503 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_5006 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(47883..48503) Burkholderia ambifaria MC40-6 6180832 YP_001809838.1 CDS BamMC406_3148 NC_010552.1 48609 49502 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 48609..49502 Burkholderia ambifaria MC40-6 6180833 YP_001809839.1 CDS BamMC406_3149 NC_010552.1 49571 50320 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bam:Bamb_5008 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(49571..50320) Burkholderia ambifaria MC40-6 6180834 YP_001809840.1 CDS BamMC406_3150 NC_010552.1 50484 50951 R PFAM: UspA domain protein; KEGG: bam:Bamb_5009 UspA domain protein; UspA domain-containing protein complement(50484..50951) Burkholderia ambifaria MC40-6 6180067 YP_001809841.1 CDS BamMC406_3151 NC_010552.1 51585 51995 R KEGG: bam:Bamb_5010 hypothetical protein; hypothetical protein complement(51585..51995) Burkholderia ambifaria MC40-6 6180068 YP_001809842.1 CDS BamMC406_3152 NC_010552.1 52274 52507 D KEGG: bam:Bamb_5011 hypothetical protein; hypothetical protein 52274..52507 Burkholderia ambifaria MC40-6 6180069 YP_001809843.1 CDS BamMC406_3153 NC_010552.1 52651 53571 D KEGG: bam:Bamb_5012 serine O-acetyltransferase; Serine O-acetyltransferase 52651..53571 Burkholderia ambifaria MC40-6 6179291 YP_001809844.1 CDS BamMC406_3154 NC_010552.1 53604 54407 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5013 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(53604..54407) Burkholderia ambifaria MC40-6 6179292 YP_001809845.1 CDS folE NC_010552.1 54407 55036 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(54407..55036) Burkholderia ambifaria MC40-6 6179293 YP_001809846.1 CDS BamMC406_3156 NC_010552.1 55138 56064 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5015 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(55138..56064) Burkholderia ambifaria MC40-6 6180880 YP_001809847.1 CDS BamMC406_3157 NC_010552.1 56181 57413 D catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 56181..57413 Burkholderia ambifaria MC40-6 6180881 YP_001809848.1 CDS BamMC406_3158 NC_010552.1 57558 58274 D KEGG: bam:Bamb_5017 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 57558..58274 Burkholderia ambifaria MC40-6 6180882 YP_001809849.1 CDS BamMC406_3159 NC_010552.1 58294 58950 D KEGG: bam:Bamb_5018 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 58294..58950 Burkholderia ambifaria MC40-6 6180032 YP_001809850.1 CDS BamMC406_3160 NC_010552.1 59039 60412 D Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase 59039..60412 Burkholderia ambifaria MC40-6 6180033 YP_001809851.1 CDS BamMC406_3161 NC_010552.1 60412 61197 D TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5020 3-oxoadipate enol-lactonase; 3-oxoadipate enol-lactonase 60412..61197 Burkholderia ambifaria MC40-6 6180034 YP_001809852.1 CDS BamMC406_3162 NC_010552.1 61208 61594 D KEGG: bam:Bamb_5021 4-carboxymuconolactone decarboxylase; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 61208..61594 Burkholderia ambifaria MC40-6 6179988 YP_001809853.1 CDS BamMC406_3163 NC_010552.1 61831 63189 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5022 major facilitator superfamily MFS_1; major facilitator transporter 61831..63189 Burkholderia ambifaria MC40-6 6179989 YP_001809854.1 CDS BamMC406_3164 NC_010552.1 63312 63572 R KEGG: bam:Bamb_5023 hypothetical protein; hypothetical protein complement(63312..63572) Burkholderia ambifaria MC40-6 6179990 YP_001809855.1 CDS BamMC406_3165 NC_010552.1 63669 64286 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_5024 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(63669..64286) Burkholderia ambifaria MC40-6 6180153 YP_001809856.1 CDS BamMC406_3166 NC_010552.1 64875 66242 R KEGG: ses:SARI_03080 hypothetical protein; hypothetical protein complement(64875..66242) Burkholderia ambifaria MC40-6 6180154 YP_001809857.1 CDS BamMC406_3167 NC_010552.1 67463 67672 R hypothetical protein complement(67463..67672) Burkholderia ambifaria MC40-6 6180155 YP_001809858.1 CDS BamMC406_3168 NC_010552.1 67692 68099 R hypothetical protein complement(67692..68099) Burkholderia ambifaria MC40-6 6180749 YP_001809859.1 CDS BamMC406_3170 NC_010552.1 68943 69656 D KEGG: rme:Rmet_6083 hypothetical protein; hypothetical protein 68943..69656 Burkholderia ambifaria MC40-6 6179251 YP_001809860.1 CDS BamMC406_3171 NC_010552.1 69936 70568 D KEGG: bxe:Bxe_B2054 hypothetical protein; hypothetical protein 69936..70568 Burkholderia ambifaria MC40-6 6180751 YP_001809861.1 CDS BamMC406_3172 NC_010552.1 70565 71965 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: bxe:Bxe_B2053 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 70565..71965 Burkholderia ambifaria MC40-6 6181509 YP_001809862.1 CDS BamMC406_3173 NC_010552.1 72402 73571 D KEGG: rsq:Rsph17025_2417 peptidase S1 and S6, chymotrypsin/Hap; hypothetical protein 72402..73571 Burkholderia ambifaria MC40-6 6181510 YP_001809863.1 CDS BamMC406_3174 NC_010552.1 73576 75477 D KEGG: pna:Pnap_4438 hypothetical protein; hypothetical protein 73576..75477 Burkholderia ambifaria MC40-6 6181511 YP_001809864.1 CDS BamMC406_3175 NC_010552.1 75474 78638 D KEGG: pna:Pnap_4437 hypothetical protein; hypothetical protein 75474..78638 Burkholderia ambifaria MC40-6 6180595 YP_001809865.1 CDS BamMC406_3176 NC_010552.1 78604 79533 D PFAM: DNA/RNA non-specific endonuclease; KEGG: pna:Pnap_4436 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 78604..79533 Burkholderia ambifaria MC40-6 6180596 YP_001809866.1 CDS BamMC406_3177 NC_010552.1 79546 79791 D KEGG: xac:XAC4136 hypothetical protein; hypothetical protein 79546..79791 Burkholderia ambifaria MC40-6 6180597 YP_001809867.1 CDS BamMC406_3178 NC_010552.1 80138 81193 D hypothetical protein 80138..81193 Burkholderia ambifaria MC40-6 6179256 YP_001809868.1 CDS BamMC406_3179 NC_010552.1 81253 81561 R hypothetical protein complement(81253..81561) Burkholderia ambifaria MC40-6 6179257 YP_001809869.1 CDS BamMC406_3180 NC_010552.1 82379 82636 D hypothetical protein 82379..82636 Burkholderia ambifaria MC40-6 6179258 YP_001809870.1 CDS BamMC406_3181 NC_010552.1 82714 82983 R hypothetical protein complement(82714..82983) Burkholderia ambifaria MC40-6 6180483 YP_001809871.1 CDS BamMC406_3182 NC_010552.1 83199 83735 D KEGG: swi:Swit_4944 hypothetical protein; hypothetical protein 83199..83735 Burkholderia ambifaria MC40-6 6180484 YP_001809872.1 CDS BamMC406_3183 NC_010552.1 83806 84156 D hypothetical protein 83806..84156 Burkholderia ambifaria MC40-6 6180485 YP_001809873.1 CDS BamMC406_3184 NC_010552.1 84256 84567 D hypothetical protein 84256..84567 Burkholderia ambifaria MC40-6 6179134 YP_001809874.1 CDS BamMC406_3185 NC_010552.1 85114 86256 D KEGG: fre:Franean1_2654 hypothetical protein; hypothetical protein 85114..86256 Burkholderia ambifaria MC40-6 6179135 YP_001809875.1 CDS BamMC406_3186 NC_010552.1 86862 87578 D KEGG: pol:Bpro_1948 hypothetical protein; hypothetical protein 86862..87578 Burkholderia ambifaria MC40-6 6179136 YP_001809876.1 CDS BamMC406_3187 NC_010552.1 88013 88417 R KEGG: bur:Bcep18194_C6603 hypothetical protein; hypothetical protein complement(88013..88417) Burkholderia ambifaria MC40-6 6180381 YP_001809877.1 CDS BamMC406_3188 NC_010552.1 88929 90617 D KEGG: cbe:Cbei_0885 hypothetical protein; hypothetical protein 88929..90617 Burkholderia ambifaria MC40-6 6180382 YP_001809878.1 CDS BamMC406_3189 NC_010552.1 90916 91824 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5031 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(90916..91824) Burkholderia ambifaria MC40-6 6180383 YP_001809879.1 CDS BamMC406_3190 NC_010552.1 91946 92659 D PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_5032 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 91946..92659 Burkholderia ambifaria MC40-6 6180799 YP_001809880.1 CDS BamMC406_3191 NC_010552.1 92681 93523 D PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_5033 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 92681..93523 Burkholderia ambifaria MC40-6 6180800 YP_001809881.1 CDS BamMC406_3192 NC_010552.1 93581 94375 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5034 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 93581..94375 Burkholderia ambifaria MC40-6 6180801 YP_001809882.1 CDS BamMC406_3193 NC_010552.1 94919 95470 D KEGG: bam:Bamb_5048 hypothetical protein; hypothetical protein 94919..95470 Burkholderia ambifaria MC40-6 6181257 YP_001809883.1 CDS BamMC406_3194 NC_010552.1 95502 95816 D PFAM: blue (type 1) copper domain protein; KEGG: bam:Bamb_5049 blue (type 1) copper domain protein; blue (type1) copper domain-containing protein 95502..95816 Burkholderia ambifaria MC40-6 6181258 YP_001809884.1 CDS BamMC406_3195 NC_010552.1 95813 96517 D member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 95813..96517 Burkholderia ambifaria MC40-6 6181259 YP_001809885.1 CDS BamMC406_3196 NC_010552.1 96541 97320 R PFAM: PGAP1 family protein; KEGG: bam:Bamb_5051 PGAP1 family protein; PGAP1 family protein complement(96541..97320) Burkholderia ambifaria MC40-6 6179606 YP_001809886.1 CDS BamMC406_3197 NC_010552.1 97317 98471 R KEGG: bam:Bamb_5052 hypothetical protein; hypothetical protein complement(97317..98471) Burkholderia ambifaria MC40-6 6179607 YP_001809887.1 CDS BamMC406_3198 NC_010552.1 98660 99838 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: bam:Bamb_5053 chromate transporter, chromate ion transporter (CHR) family; chromate transporter complement(98660..99838) Burkholderia ambifaria MC40-6 6179608 YP_001809888.1 CDS BamMC406_3199 NC_010552.1 99835 100812 R KEGG: bam:Bamb_5054 chromate resistance exported protein; chromate resistance exported protein complement(99835..100812) Burkholderia ambifaria MC40-6 6179629 YP_001809889.1 CDS BamMC406_3200 NC_010552.1 100997 101269 D PFAM: protein of unknown function DUF156; KEGG: bam:Bamb_5055 uncharacterized BCR; hypothetical protein 100997..101269 Burkholderia ambifaria MC40-6 6179630 YP_001809890.1 CDS BamMC406_3201 NC_010552.1 101281 102573 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bam:Bamb_5056 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 101281..102573 Burkholderia ambifaria MC40-6 6179631 YP_001809891.1 CDS BamMC406_3202 NC_010552.1 102576 102761 D PFAM: protein of unknown function DUF1289; KEGG: bvi:Bcep1808_3873 protein of unknown function DUF1289; hypothetical protein 102576..102761 Burkholderia ambifaria MC40-6 6180947 YP_001809892.1 CDS BamMC406_3203 NC_010552.1 102889 104973 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_5058 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(102889..104973) Burkholderia ambifaria MC40-6 6180948 YP_001809893.1 CDS BamMC406_3204 NC_010552.1 105189 106394 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5059 major facilitator superfamily MFS_1; major facilitator transporter 105189..106394 Burkholderia ambifaria MC40-6 6180949 YP_001809894.1 CDS BamMC406_3205 NC_010552.1 106726 108033 D PFAM: sodium:dicarboxylate symporter; KEGG: bam:Bamb_5060 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 106726..108033 Burkholderia ambifaria MC40-6 6180259 YP_001809895.1 CDS BamMC406_3206 NC_010552.1 108471 110405 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bam:Bamb_5062 hypothetical protein; SMP-30/gluconolaconase/LRE domain-containing protein 108471..110405 Burkholderia ambifaria MC40-6 6180260 YP_001809896.1 CDS BamMC406_3207 NC_010552.1 110630 111571 R PFAM: amidohydrolase 2; KEGG: bam:Bamb_5067 amidohydrolase 2; amidohydrolase 2 complement(110630..111571) Burkholderia ambifaria MC40-6 6180261 YP_001809897.1 CDS BamMC406_3208 NC_010552.1 111549 112496 R KEGG: bam:Bamb_5068 hypothetical protein; hypothetical protein complement(111549..112496) Burkholderia ambifaria MC40-6 6181271 YP_001809898.1 CDS BamMC406_3209 NC_010552.1 112543 113835 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5069 major facilitator superfamily MFS_1; major facilitator transporter complement(112543..113835) Burkholderia ambifaria MC40-6 6181272 YP_001809899.1 CDS BamMC406_3210 NC_010552.1 113931 114848 R PFAM: dihydrodipicolinate synthetase; KEGG: bam:Bamb_5070 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(113931..114848) Burkholderia ambifaria MC40-6 6181273 YP_001809900.1 CDS BamMC406_3211 NC_010552.1 114857 116029 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_5071 mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; mandelate racemase/muconate lactonizing protein complement(114857..116029) Burkholderia ambifaria MC40-6 6179865 YP_001809901.1 CDS pdxA NC_010552.1 116080 117126 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(116080..117126) Burkholderia ambifaria MC40-6 6179866 YP_001809902.1 CDS BamMC406_3213 NC_010552.1 117282 118232 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5073 transcriptional regulator, LysR family; LysR family transcriptional regulator 117282..118232 Burkholderia ambifaria MC40-6 6179867 YP_001809903.1 CDS BamMC406_3214 NC_010552.1 118216 118461 D KEGG: spu:576423 similar to spicule matrix protein SM29; hypothetical protein 118216..118461 Burkholderia ambifaria MC40-6 6181090 YP_001809904.1 CDS BamMC406_3215 NC_010552.1 118506 119798 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5075 major facilitator superfamily MFS_1; major facilitator transporter complement(118506..119798) Burkholderia ambifaria MC40-6 6181091 YP_001809905.1 CDS BamMC406_3216 NC_010552.1 120207 120362 R KEGG: bam:Bamb_5076 hypothetical protein; hypothetical protein complement(120207..120362) Burkholderia ambifaria MC40-6 6181092 YP_001809906.1 CDS BamMC406_3217 NC_010552.1 120567 121241 D PFAM: Phosphoglycerate mutase; KEGG: bam:Bamb_5077 phosphoglycerate mutase; phosphoglycerate mutase 120567..121241 Burkholderia ambifaria MC40-6 6179966 YP_001809907.1 CDS BamMC406_3218 NC_010552.1 121261 122292 D PFAM: aminoglycoside phosphotransferase; KEGG: bam:Bamb_5078 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 121261..122292 Burkholderia ambifaria MC40-6 6179967 YP_001809908.1 CDS BamMC406_3219 NC_010552.1 122342 123106 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_5079 short chain dehydrogenase; short chain dehydrogenase 122342..123106 Burkholderia ambifaria MC40-6 6179968 YP_001809909.1 CDS BamMC406_3220 NC_010552.1 123114 123872 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5080 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 123114..123872 Burkholderia ambifaria MC40-6 6180156 YP_001809910.1 CDS BamMC406_3221 NC_010552.1 123906 125150 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_5081 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 123906..125150 Burkholderia ambifaria MC40-6 6180157 YP_001809911.1 CDS BamMC406_3222 NC_010552.1 125230 126135 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5082 transcriptional regulator, LysR family; LysR family transcriptional regulator 125230..126135 Burkholderia ambifaria MC40-6 6180158 YP_001809912.1 CDS BamMC406_3223 NC_010552.1 126173 127285 R PFAM: heat shock protein DnaJ domain protein; KEGG: bam:Bamb_5083 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(126173..127285) Burkholderia ambifaria MC40-6 6181034 YP_001809913.1 CDS BamMC406_3224 NC_010552.1 127373 128137 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bmu:Bmul_5269 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(127373..128137) Burkholderia ambifaria MC40-6 6181035 YP_001809914.1 CDS BamMC406_3225 NC_010552.1 128145 129191 R PFAM: proline racemase; KEGG: bmu:Bmul_5268 proline racemase; proline racemase complement(128145..129191) Burkholderia ambifaria MC40-6 6181036 YP_001809915.1 CDS BamMC406_3226 NC_010552.1 129207 130688 R PFAM: Aldehyde Dehydrogenase_; KEGG: bmu:Bmul_5267 aldehyde dehydrogenase; aldehyde dehydrogenase complement(129207..130688) Burkholderia ambifaria MC40-6 6181277 YP_001809916.1 CDS BamMC406_3227 NC_010552.1 130704 131996 R PFAM: FAD dependent oxidoreductase; KEGG: bmu:Bmul_5266 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(130704..131996) Burkholderia ambifaria MC40-6 6181278 YP_001809917.1 CDS BamMC406_3228 NC_010552.1 131993 133009 R PFAM: proline racemase; KEGG: bmu:Bmul_5265 proline racemase; hydroxyproline-2-epimerase complement(131993..133009) Burkholderia ambifaria MC40-6 6181279 YP_001809918.1 CDS BamMC406_3229 NC_010552.1 133073 133951 R PFAM: dihydrodipicolinate synthetase; KEGG: bmu:Bmul_5264 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(133073..133951) Burkholderia ambifaria MC40-6 6180144 YP_001809919.1 CDS BamMC406_3230 NC_010552.1 133986 134651 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmu:Bmul_5263 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(133986..134651) Burkholderia ambifaria MC40-6 6180145 YP_001809920.1 CDS BamMC406_3231 NC_010552.1 134662 135333 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmu:Bmul_5262 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(134662..135333) Burkholderia ambifaria MC40-6 6180146 YP_001809921.1 CDS BamMC406_3232 NC_010552.1 135344 136183 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmu:Bmul_5261 ABC transporter related; ABC transporter-like protein complement(135344..136183) Burkholderia ambifaria MC40-6 6179149 YP_001809922.1 CDS BamMC406_3233 NC_010552.1 136283 137116 R PFAM: extracellular solute-binding protein family 3; KEGG: bmu:Bmul_5260 extracellular solute-binding protein family 3; extracellular solute-binding protein complement(136283..137116) Burkholderia ambifaria MC40-6 6179150 YP_001809923.1 CDS BamMC406_3234 NC_010552.1 137459 139825 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(137459..139825) Burkholderia ambifaria MC40-6 6179151 YP_001809924.1 CDS BamMC406_3235 NC_010552.1 139913 141505 R KEGG: bam:Bamb_5085 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(139913..141505) Burkholderia ambifaria MC40-6 6181265 YP_001809925.1 CDS BamMC406_3236 NC_010552.1 141665 143305 R PFAM: EAL domain protein; KEGG: bam:Bamb_5086 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(141665..143305) Burkholderia ambifaria MC40-6 6181266 YP_001809926.1 CDS BamMC406_3237 NC_010552.1 143760 144191 R KEGG: bam:Bamb_5087 hypothetical protein; hypothetical protein complement(143760..144191) Burkholderia ambifaria MC40-6 6181267 YP_001809927.1 CDS BamMC406_3238 NC_010552.1 144369 144653 D KEGG: bam:Bamb_5088 alginate regulatory protein AlgR3; alginate regulatory protein AlgR3 144369..144653 Burkholderia ambifaria MC40-6 6180723 YP_001809928.1 CDS BamMC406_3239 NC_010552.1 144658 146280 R PFAM: histidine acid phosphatase; KEGG: bam:Bamb_5089 histidine acid phosphatase; histidine acid phosphatase complement(144658..146280) Burkholderia ambifaria MC40-6 6180724 YP_001809929.1 CDS BamMC406_3240 NC_010552.1 146466 146900 R KEGG: bam:Bamb_5090 hypothetical protein; hypothetical protein complement(146466..146900) Burkholderia ambifaria MC40-6 6180725 YP_001809930.1 CDS BamMC406_3241 NC_010552.1 147218 148576 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_5091 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(147218..148576) Burkholderia ambifaria MC40-6 6181392 YP_001809931.1 CDS BamMC406_3242 NC_010552.1 148677 149630 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5092 transcriptional regulator, LysR family; LysR family transcriptional regulator 148677..149630 Burkholderia ambifaria MC40-6 6181393 YP_001809932.1 CDS BamMC406_3243 NC_010552.1 149642 149839 R KEGG: bch:Bcen2424_5859 hypothetical protein; hypothetical protein complement(149642..149839) Burkholderia ambifaria MC40-6 6181394 YP_001809933.1 CDS BamMC406_3244 NC_010552.1 150031 150936 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5093 transcriptional regulator, AraC family; AraC family transcriptional regulator 150031..150936 Burkholderia ambifaria MC40-6 6180584 YP_001809934.1 CDS BamMC406_3245 NC_010552.1 151222 152109 D KEGG: bam:Bamb_5094 NmrA family protein; NmrA family protein 151222..152109 Burkholderia ambifaria MC40-6 6180585 YP_001809935.1 CDS BamMC406_3246 NC_010552.1 152144 153346 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: bam:Bamb_5095 benzoate transporter; benzoate transporter complement(152144..153346) Burkholderia ambifaria MC40-6 6180586 YP_001809936.1 CDS BamMC406_3247 NC_010552.1 153567 154592 R PFAM: fatty acid desaturase; KEGG: bam:Bamb_5096 fatty acid desaturase; fatty acid desaturase complement(153567..154592) Burkholderia ambifaria MC40-6 6179273 YP_001809937.1 CDS BamMC406_3248 NC_010552.1 154898 155722 D KEGG: bam:Bamb_5097 ABC phosphate/phosphonate transporter, periplasmic ligand binding protein; phosphate/phosphonate ABC transporter periplasmic ligand binding protein 154898..155722 Burkholderia ambifaria MC40-6 6179274 YP_001809938.1 CDS BamMC406_3249 NC_010552.1 155763 157160 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(155763..157160) Burkholderia ambifaria MC40-6 6179275 YP_001809939.1 CDS BamMC406_3250 NC_010552.1 157157 157360 R KEGG: bam:Bamb_5099 hypothetical protein; hypothetical protein complement(157157..157360) Burkholderia ambifaria MC40-6 6181203 YP_001809940.1 CDS BamMC406_3251 NC_010552.1 157825 159468 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(157825..159468) Burkholderia ambifaria MC40-6 6181204 YP_001809941.1 CDS BamMC406_3252 NC_010552.1 159995 160300 R KEGG: bam:Bamb_5102 hypothetical protein; hypothetical protein complement(159995..160300) Burkholderia ambifaria MC40-6 6181205 YP_001809942.1 CDS BamMC406_3253 NC_010552.1 160370 160858 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_5103 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(160370..160858) Burkholderia ambifaria MC40-6 6180268 YP_001809943.1 CDS BamMC406_3254 NC_010552.1 160984 162021 D PFAM: histone deacetylase superfamily; KEGG: bam:Bamb_5104 histone deacetylase superfamily; histone deacetylase superfamily protein 160984..162021 Burkholderia ambifaria MC40-6 6180269 YP_001809944.1 CDS BamMC406_3256 NC_010552.1 162851 163729 R PFAM: MscS Mechanosensitive ion channel; KEGG: bam:Bamb_5106 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(162851..163729) Burkholderia ambifaria MC40-6 6179252 YP_001809945.1 CDS BamMC406_3257 NC_010552.1 164060 165412 D PFAM: Peptidase M23; KEGG: bch:Bcen2424_3172 peptidase M23B; peptidase M23 164060..165412 Burkholderia ambifaria MC40-6 6180073 YP_001809946.1 CDS BamMC406_3258 NC_010552.1 165526 166263 R PFAM: Fucose-binding lectin II; KEGG: bam:Bamb_5108 fucose-binding lectin II; fucose-binding lectin II complement(165526..166263) Burkholderia ambifaria MC40-6 6180074 YP_001809947.1 CDS BamMC406_3259 NC_010552.1 166479 166868 R KEGG: bch:Bcen2424_3178 fucose-binding lectin II; fucose-binding lectin II complement(166479..166868) Burkholderia ambifaria MC40-6 6180075 YP_001809948.1 CDS BamMC406_3260 NC_010552.1 167542 167946 D KEGG: bvi:Bcep1808_3910 hypothetical protein; hypothetical protein 167542..167946 Burkholderia ambifaria MC40-6 6179793 YP_001809949.1 CDS BamMC406_3261 NC_010552.1 168063 168323 R KEGG: bxe:Bxe_B2249 hypothetical protein; hypothetical protein complement(168063..168323) Burkholderia ambifaria MC40-6 6179794 YP_001809950.1 CDS BamMC406_3262 NC_010552.1 168340 169149 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_5120 redoxin domain protein; redoxin domain-containing protein complement(168340..169149) Burkholderia ambifaria MC40-6 6179795 YP_001809951.1 CDS BamMC406_3263 NC_010552.1 169438 170028 R KEGG: bam:Bamb_5121 hypothetical protein; hypothetical protein complement(169438..170028) Burkholderia ambifaria MC40-6 6181150 YP_001809952.1 CDS BamMC406_3264 NC_010552.1 170256 171260 R KEGG: bam:Bamb_5123 hypothetical protein; hypothetical protein complement(170256..171260) Burkholderia ambifaria MC40-6 6181151 YP_001809953.1 CDS BamMC406_3265 NC_010552.1 171631 172356 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_5124 methyltransferase type 11; type 11 methyltransferase 171631..172356 Burkholderia ambifaria MC40-6 6181152 YP_001809954.1 CDS BamMC406_3266 NC_010552.1 172388 172864 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_5125 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(172388..172864) Burkholderia ambifaria MC40-6 6181485 YP_001809955.1 CDS BamMC406_3267 NC_010552.1 172996 174474 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_5126 transcriptional regulator, GntR family; transcriptional regulator 172996..174474 Burkholderia ambifaria MC40-6 6181486 YP_001809956.1 CDS BamMC406_3268 NC_010552.1 174530 175567 R PFAM: aldo/keto reductase; KEGG: bam:Bamb_5127 aldo/keto reductase; aldo/keto reductase complement(174530..175567) Burkholderia ambifaria MC40-6 6181487 YP_001809957.1 CDS BamMC406_3269 NC_010552.1 175697 176587 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5128 transcriptional regulator, LysR family; LysR family transcriptional regulator 175697..176587 Burkholderia ambifaria MC40-6 6179586 YP_001809958.1 CDS BamMC406_3270 NC_010552.1 176775 177074 D SMART: regulatory protein ArsR; KEGG: bam:Bamb_5129 putative transcriptional regulator, ArsR family; ArsR family transcriptional regulator 176775..177074 Burkholderia ambifaria MC40-6 6179587 YP_001809959.1 CDS BamMC406_3271 NC_010552.1 177095 178447 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: bam:Bamb_5130 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 177095..178447 Burkholderia ambifaria MC40-6 6179588 YP_001809960.1 CDS BamMC406_3272 NC_010552.1 178599 179279 D hypothetical protein 178599..179279 Burkholderia ambifaria MC40-6 6180003 YP_001809961.1 CDS BamMC406_3273 NC_010552.1 179391 179858 D PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_5131 cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein 179391..179858 Burkholderia ambifaria MC40-6 6180004 YP_001809962.1 CDS BamMC406_3274 NC_010552.1 179928 180749 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5132 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 179928..180749 Burkholderia ambifaria MC40-6 6180005 YP_001809963.1 CDS BamMC406_3275 NC_010552.1 180855 181634 R KEGG: bam:Bamb_5133 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE complement(180855..181634) Burkholderia ambifaria MC40-6 6179253 YP_001809964.1 CDS BamMC406_3276 NC_010552.1 181824 182126 R PFAM: branched-chain amino acid transport; KEGG: bam:Bamb_5134 branched-chain amino acid transport; branched-chain amino acid transport complement(181824..182126) Burkholderia ambifaria MC40-6 6179254 YP_001809965.1 CDS BamMC406_3277 NC_010552.1 182116 182853 R PFAM: AzlC family protein; KEGG: bam:Bamb_5135 AzlC family protein; AzlC family protein complement(182116..182853) Burkholderia ambifaria MC40-6 6179255 YP_001809966.1 CDS BamMC406_3278 NC_010552.1 182979 183437 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bch:Bcen2424_3357 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 182979..183437 Burkholderia ambifaria MC40-6 6180091 YP_001809967.1 CDS BamMC406_3279 NC_010552.1 183653 184222 D KEGG: bch:Bcen2424_3358 hypothetical protein; hypothetical protein 183653..184222 Burkholderia ambifaria MC40-6 6180092 YP_001809968.1 CDS BamMC406_3280 NC_010552.1 184346 184633 R PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_5139 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(184346..184633) Burkholderia ambifaria MC40-6 6180093 YP_001809969.1 CDS BamMC406_3281 NC_010552.1 184620 184961 R PFAM: protein of unknown function DUF891; KEGG: amr:AM1_6214 phage derived protein GP49-like protein (DUF891); hypothetical protein complement(184620..184961) Burkholderia ambifaria MC40-6 6179175 YP_001809970.1 CDS BamMC406_3282 NC_010552.1 185177 185809 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bur:Bcep18194_B2895 lysine exporter family protein (LysE/YggA); lysine exporter protein LysE/YggA complement(185177..185809) Burkholderia ambifaria MC40-6 6179176 YP_001809971.1 CDS BamMC406_3283 NC_010552.1 186121 187878 D PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: bam:Bamb_1288 polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein 186121..187878 Burkholderia ambifaria MC40-6 6179177 YP_001809972.1 CDS BamMC406_3284 NC_010552.1 187941 191354 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: bam:Bamb_1289 filamentous haemagglutinin family outer membrane protein; filamentous hemagglutinin outer membrane protein 187941..191354 Burkholderia ambifaria MC40-6 6179231 YP_001809973.1 CDS BamMC406_3285 NC_010552.1 191881 194985 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5151 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 191881..194985 Burkholderia ambifaria MC40-6 6179232 YP_001809974.1 CDS BamMC406_3286 NC_010552.1 195093 195290 D KEGG: bmu:Bmul_5218 hypothetical protein; hypothetical protein 195093..195290 Burkholderia ambifaria MC40-6 6179233 YP_001809975.1 CDS BamMC406_3287 NC_010552.1 195604 196275 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_5152 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 195604..196275 Burkholderia ambifaria MC40-6 6179517 YP_001809976.1 CDS BamMC406_3288 NC_010552.1 196457 199555 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: bam:Bamb_5153 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 196457..199555 Burkholderia ambifaria MC40-6 6179518 YP_001809977.1 CDS BamMC406_3289 NC_010552.1 199536 199940 R PFAM: Fimbrial protein; KEGG: dac:Daci_4996 fimbrial protein; fimbrial protein complement(199536..199940) Burkholderia ambifaria MC40-6 6179519 YP_001809978.1 CDS BamMC406_3290 NC_010552.1 201787 202380 D PFAM: Fimbrial protein; KEGG: pap:PSPA7_4408 fimbrial subunit CupC1; fimbrial protein 201787..202380 Burkholderia ambifaria MC40-6 6179983 YP_001809979.1 CDS BamMC406_3291 NC_010552.1 202435 203151 D PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pae:PA0993 chaperone CupC2; Pili assembly chaperone, N-terminal 202435..203151 Burkholderia ambifaria MC40-6 6179984 YP_001809980.1 CDS BamMC406_3292 NC_010552.1 203274 205781 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pap:PSPA7_4405 outer membrane usher protein FimD; fimbrial biogenesis outer membrane usher protein 203274..205781 Burkholderia ambifaria MC40-6 6179985 YP_001809981.1 CDS BamMC406_3293 NC_010552.1 205949 206977 D PFAM: Fimbrial protein; KEGG: pau:PA14_30690 hypothetical protein; fimbrial protein 205949..206977 Burkholderia ambifaria MC40-6 6180717 YP_001809982.1 CDS BamMC406_3295 NC_010552.1 207351 208361 D PFAM: Fimbrial protein; KEGG: rme:Rmet_2545 fimbrial protein; fimbrial protein 207351..208361 Burkholderia ambifaria MC40-6 6181368 YP_001809983.1 CDS BamMC406_3297 NC_010552.1 208701 209690 D PFAM: Fimbrial protein; KEGG: dac:Daci_0124 fimbrial protein; fimbrial protein 208701..209690 Burkholderia ambifaria MC40-6 6181369 YP_001809984.1 CDS BamMC406_3298 NC_010552.1 210226 210558 R KEGG: bur:Bcep18194_B2893 hypothetical protein; hypothetical protein complement(210226..210558) Burkholderia ambifaria MC40-6 6179695 YP_001809985.1 CDS BamMC406_3299 NC_010552.1 210706 211407 R KEGG: bur:Bcep18194_B2891 hypothetical protein; hypothetical protein complement(210706..211407) Burkholderia ambifaria MC40-6 6179696 YP_001809986.1 CDS BamMC406_3300 NC_010552.1 211609 212016 D KEGG: bur:Bcep18194_B2890 hypothetical protein; hypothetical protein 211609..212016 Burkholderia ambifaria MC40-6 6179697 YP_001809987.1 CDS BamMC406_3301 NC_010552.1 212027 212446 D PFAM: protein of unknown function UPF0047; KEGG: bch:Bcen2424_3367 protein of unknown function UPF0047; hypothetical protein 212027..212446 Burkholderia ambifaria MC40-6 6179358 YP_001809988.1 CDS BamMC406_3302 NC_010552.1 212516 214336 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bch:Bcen2424_3368 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(212516..214336) Burkholderia ambifaria MC40-6 6179359 YP_001809989.1 CDS BamMC406_3303 NC_010552.1 214338 214841 R PFAM: oxidoreductase molybdopterin binding; KEGG: bch:Bcen2424_3369 oxidoreductase, molybdopterin binding; molybdopterin binding oxidoreductase complement(214338..214841) Burkholderia ambifaria MC40-6 6179360 YP_001809990.1 CDS BamMC406_3304 NC_010552.1 214911 215786 R PFAM: response regulator receiver; BetR domain protein; KEGG: bur:Bcep18194_B2886 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(214911..215786) Burkholderia ambifaria MC40-6 6180395 YP_001809991.1 CDS BamMC406_3305 NC_010552.1 216148 216735 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: bam:Bamb_5148 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 216148..216735 Burkholderia ambifaria MC40-6 6180396 YP_001809992.1 CDS BamMC406_3306 NC_010552.1 216858 217685 D KEGG: bch:Bcen2424_6261 hypothetical protein; hypothetical protein 216858..217685 Burkholderia ambifaria MC40-6 6180397 YP_001809993.1 CDS BamMC406_3307 NC_010552.1 217800 218795 D KEGG: bur:Bcep18194_B2883 hypothetical protein; hypothetical protein 217800..218795 Burkholderia ambifaria MC40-6 6179853 YP_001809994.1 CDS BamMC406_3308 NC_010552.1 218995 220011 R catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; 1-aminocyclopropane-1-carboxylate deaminase complement(218995..220011) Burkholderia ambifaria MC40-6 6179854 YP_001809995.1 CDS BamMC406_3309 NC_010552.1 220209 220709 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_5156 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 220209..220709 Burkholderia ambifaria MC40-6 6179855 YP_001809996.1 CDS BamMC406_3310 NC_010552.1 220814 223549 R paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 complement(220814..223549) Burkholderia ambifaria MC40-6 6181461 YP_001809997.1 CDS BamMC406_3311 NC_010552.1 223699 224226 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bxe:Bxe_A4473 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 223699..224226 Burkholderia ambifaria MC40-6 6181462 YP_001809998.1 CDS BamMC406_3312 NC_010552.1 224464 226185 D catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 224464..226185 Burkholderia ambifaria MC40-6 6181463 YP_001809999.1 CDS BamMC406_3313 NC_010552.1 226219 226347 R KEGG: bur:Bcep18194_B2856 transcriptional regulator, LysR family; hypothetical protein complement(226219..226347) Burkholderia ambifaria MC40-6 6180041 YP_001810000.1 CDS BamMC406_3314 NC_010552.1 226664 227254 D PFAM: Methyltransferase type 11; Methyltransferase type 12; SMART: ribosomal RNA adenine methylase transferase; KEGG: bam:Bamb_5159 methyltransferase type 11; type 11 methyltransferase 226664..227254 Burkholderia ambifaria MC40-6 6180042 YP_001810001.1 CDS BamMC406_3316 NC_010552.1 227791 228357 D KEGG: bam:Bamb_5161 hypothetical protein; hypothetical protein 227791..228357 Burkholderia ambifaria MC40-6 6181370 YP_001810002.1 CDS BamMC406_3317 NC_010552.1 228388 229263 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5162 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(228388..229263) Burkholderia ambifaria MC40-6 6180103 YP_001810003.1 CDS BamMC406_3318 NC_010552.1 229423 230751 D KEGG: bam:Bamb_5163 uncharacterized membrane-anchored protein; membrane-anchored protein 229423..230751 Burkholderia ambifaria MC40-6 6180104 YP_001810004.1 CDS BamMC406_3319 NC_010552.1 230782 230982 D KEGG: bam:Bamb_5164 hypothetical protein; hypothetical protein 230782..230982 Burkholderia ambifaria MC40-6 6180105 YP_001810005.1 CDS BamMC406_3320 NC_010552.1 231082 233094 R KEGG: bch:Bcen2424_0479 hypothetical protein; hypothetical protein complement(231082..233094) Burkholderia ambifaria MC40-6 6180708 YP_001810006.1 CDS BamMC406_3321 NC_010552.1 233110 233565 R KEGG: bur:Bcep18194_B2818 hypothetical protein; hypothetical protein complement(233110..233565) Burkholderia ambifaria MC40-6 6180709 YP_001810007.1 CDS BamMC406_3322 NC_010552.1 233583 234062 R KEGG: bam:Bamb_5165 hypothetical protein; hypothetical protein complement(233583..234062) Burkholderia ambifaria MC40-6 6180710 YP_001810008.1 CDS BamMC406_3323 NC_010552.1 234080 234559 R KEGG: bam:Bamb_5166 hypothetical protein; hypothetical protein complement(234080..234559) Burkholderia ambifaria MC40-6 6180274 YP_001810009.1 CDS BamMC406_3324 NC_010552.1 234577 235059 R KEGG: bam:Bamb_5166 hypothetical protein; hypothetical protein complement(234577..235059) Burkholderia ambifaria MC40-6 6180275 YP_001810010.1 CDS BamMC406_3325 NC_010552.1 235093 235320 R KEGG: bam:Bamb_5165 hypothetical protein; hypothetical protein complement(235093..235320) Burkholderia ambifaria MC40-6 6180276 YP_001810011.1 CDS BamMC406_3326 NC_010552.1 235380 236429 R KEGG: bmu:Bmul_2921 hypothetical protein; hypothetical protein complement(235380..236429) Burkholderia ambifaria MC40-6 6180197 YP_001810012.1 CDS BamMC406_3327 NC_010552.1 236426 238978 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bvi:Bcep1808_0451 rhs element Vgr protein; type VI secretion system Vgr family protein complement(236426..238978) Burkholderia ambifaria MC40-6 6180198 YP_001810013.1 CDS BamMC406_3329 NC_010552.1 239479 239913 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_5167 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 239479..239913 Burkholderia ambifaria MC40-6 6179871 YP_001810014.1 CDS BamMC406_3330 NC_010552.1 239929 240825 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5168 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(239929..240825) Burkholderia ambifaria MC40-6 6180262 YP_001810015.1 CDS BamMC406_3331 NC_010552.1 240948 241736 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_5169 trans-aconitate 2-methyltransferase; trans-aconitate 2-methyltransferase 240948..241736 Burkholderia ambifaria MC40-6 6180263 YP_001810016.1 CDS BamMC406_3332 NC_010552.1 241779 242369 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_5170 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(241779..242369) Burkholderia ambifaria MC40-6 6180264 YP_001810017.1 CDS BamMC406_3333 NC_010552.1 242628 242768 R hypothetical protein complement(242628..242768) Burkholderia ambifaria MC40-6 6180415 YP_001810018.1 CDS BamMC406_3334 NC_010552.1 242905 243309 D KEGG: bam:Bamb_5171 hypothetical protein; hypothetical protein 242905..243309 Burkholderia ambifaria MC40-6 6180416 YP_001810019.1 CDS BamMC406_3335 NC_010552.1 243377 244210 R PFAM: regulatory protein LuxR; KEGG: bam:Bamb_5172 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(243377..244210) Burkholderia ambifaria MC40-6 6180417 YP_001810020.1 CDS BamMC406_3336 NC_010552.1 244477 245871 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5174 major facilitator superfamily MFS_1; major facilitator transporter complement(244477..245871) Burkholderia ambifaria MC40-6 6181260 YP_001810021.1 CDS BamMC406_3337 NC_010552.1 246066 246926 R KEGG: bam:Bamb_5175 hypothetical protein; hypothetical protein complement(246066..246926) Burkholderia ambifaria MC40-6 6181261 YP_001810022.1 CDS BamMC406_3338 NC_010552.1 246975 247343 R KEGG: bam:Bamb_5176 hypothetical protein; hypothetical protein complement(246975..247343) Burkholderia ambifaria MC40-6 6181262 YP_001810023.1 CDS BamMC406_3339 NC_010552.1 247364 247675 R PFAM: helix-turn-helix HxlR type; KEGG: bam:Bamb_5177 transcriptional regulator, HxlR family; HxlR family transcriptional regulator complement(247364..247675) Burkholderia ambifaria MC40-6 6180823 YP_001810024.1 CDS BamMC406_3341 NC_010552.1 249048 249680 D PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_5178 glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 249048..249680 Burkholderia ambifaria MC40-6 6179872 YP_001810025.1 CDS BamMC406_3342 NC_010552.1 249762 250148 D KEGG: bam:Bamb_5179 hypothetical protein; hypothetical protein 249762..250148 Burkholderia ambifaria MC40-6 6180825 YP_001810026.1 CDS BamMC406_3343 NC_010552.1 250294 251532 D PFAM: outer membrane efflux protein; KEGG: bam:Bamb_5180 outer membrane efflux protein; outer membrane efflux protein 250294..251532 Burkholderia ambifaria MC40-6 6180728 YP_001810027.1 CDS BamMC406_3344 NC_010552.1 251544 253064 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bam:Bamb_5181 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 251544..253064 Burkholderia ambifaria MC40-6 6180729 YP_001810028.1 CDS BamMC406_3345 NC_010552.1 253061 256267 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: bam:Bamb_5182 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 253061..256267 Burkholderia ambifaria MC40-6 6180730 YP_001810029.1 CDS BamMC406_3346 NC_010552.1 256264 256632 D KEGG: bam:Bamb_5183 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 256264..256632 Burkholderia ambifaria MC40-6 6180627 YP_001810030.1 CDS BamMC406_3347 NC_010552.1 256747 257757 R PFAM: sodium/calcium exchanger membrane region; KEGG: bam:Bamb_5184 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region complement(256747..257757) Burkholderia ambifaria MC40-6 6180628 YP_001810031.1 CDS BamMC406_3348 NC_010552.1 258151 259566 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5185 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase complement(258151..259566) Burkholderia ambifaria MC40-6 6180629 YP_001810032.1 CDS BamMC406_3349 NC_010552.1 259563 260234 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_5186 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator complement(259563..260234) Burkholderia ambifaria MC40-6 6181443 YP_001810033.1 CDS BamMC406_3350 NC_010552.1 260513 260899 D KEGG: bam:Bamb_5187 hypothetical protein; hypothetical protein 260513..260899 Burkholderia ambifaria MC40-6 6181444 YP_001810034.1 CDS BamMC406_3351 NC_010552.1 260993 261289 D KEGG: bam:Bamb_5188 hypothetical protein; hypothetical protein 260993..261289 Burkholderia ambifaria MC40-6 6181445 YP_001810035.1 CDS BamMC406_3352 NC_010552.1 261286 262824 D PFAM: outer membrane efflux protein; KEGG: bam:Bamb_5189 outer membrane efflux protein; outer membrane efflux protein 261286..262824 Burkholderia ambifaria MC40-6 6180988 YP_001810036.1 CDS BamMC406_3353 NC_010552.1 262826 264121 D PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bam:Bamb_5190 multicopper oxidase, type 2; multicopper oxidase, type 3; multicopper oxidase type 3 262826..264121 Burkholderia ambifaria MC40-6 6180989 YP_001810037.1 CDS BamMC406_3354 NC_010552.1 264202 264552 D KEGG: bam:Bamb_5191 hypothetical protein; hypothetical protein 264202..264552 Burkholderia ambifaria MC40-6 6180990 YP_001810038.1 CDS BamMC406_3355 NC_010552.1 264552 264971 D PFAM: copper resistance protein CopC; KEGG: bam:Bamb_5192 copper resistance protein CopC; copper resistance protein CopC 264552..264971 Burkholderia ambifaria MC40-6 6180961 YP_001810039.1 CDS BamMC406_3356 NC_010552.1 264989 265909 D PFAM: copper resistance D domain protein; KEGG: bam:Bamb_5193 copper resistance D domain protein; copper resistance D domain-containing protein 264989..265909 Burkholderia ambifaria MC40-6 6180962 YP_001810040.1 CDS BamMC406_3357 NC_010552.1 266102 267916 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bam:Bamb_5194 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 266102..267916 Burkholderia ambifaria MC40-6 6180963 YP_001810041.1 CDS BamMC406_3358 NC_010552.1 268736 270586 D PFAM: peptidase S10 serine carboxypeptidase; KEGG: bam:Bamb_5195 peptidase S10, serine carboxypeptidase; peptidase S10 serine carboxypeptidase 268736..270586 Burkholderia ambifaria MC40-6 6179262 YP_001810042.1 CDS BamMC406_3359 NC_010552.1 270661 271059 D KEGG: bam:Bamb_5196 hypothetical protein; hypothetical protein 270661..271059 Burkholderia ambifaria MC40-6 6179263 YP_001810043.1 CDS BamMC406_3360 NC_010552.1 271244 272248 R SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5197 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(271244..272248) Burkholderia ambifaria MC40-6 6179264 YP_001810044.1 CDS BamMC406_3361 NC_010552.1 272453 273700 D TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-14-lactone oxidase; KEGG: bam:Bamb_5198 FAD-linked oxidoreductase; FAD-linked oxidoreductase 272453..273700 Burkholderia ambifaria MC40-6 6179169 YP_001810045.1 CDS BamMC406_3362 NC_010552.1 273734 274513 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5199 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 273734..274513 Burkholderia ambifaria MC40-6 6179170 YP_001810046.1 CDS glyA NC_010552.1 274832 276079 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 274832..276079 Burkholderia ambifaria MC40-6 6179171 YP_001810047.1 CDS BamMC406_3364 NC_010552.1 276229 277761 R PFAM: amino acid permease-associated region; KEGG: bam:Bamb_5201 amino acid permease-associated region; amino acid permease-associated protein complement(276229..277761) Burkholderia ambifaria MC40-6 6179228 YP_001810048.1 CDS BamMC406_3365 NC_010552.1 278372 279856 R PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; protein of unknown function DUF442; KEGG: bam:Bamb_5203 aminotransferase, class V; class V aminotransferase complement(278372..279856) Burkholderia ambifaria MC40-6 6179229 YP_001810049.1 CDS BamMC406_3366 NC_010552.1 280114 280428 R KEGG: bam:Bamb_5204 hypothetical protein; hypothetical protein complement(280114..280428) Burkholderia ambifaria MC40-6 6179230 YP_001810050.1 CDS BamMC406_3367 NC_010552.1 280447 280704 R PFAM: PAAR repeat-containing protein; KEGG: bam:Bamb_5205 PaaR repeat-containing protein; PAAR repeat-containing protein complement(280447..280704) Burkholderia ambifaria MC40-6 6179125 YP_001810051.1 CDS BamMC406_3368 NC_010552.1 280776 282119 R KEGG: bam:Bamb_5206 hypothetical protein; hypothetical protein complement(280776..282119) Burkholderia ambifaria MC40-6 6179126 YP_001810052.1 CDS BamMC406_3369 NC_010552.1 282339 283817 R KEGG: bam:Bamb_5207 hypothetical protein; hypothetical protein complement(282339..283817) Burkholderia ambifaria MC40-6 6179127 YP_001810053.1 CDS BamMC406_3370 NC_010552.1 283814 286126 R KEGG: bam:Bamb_5208 putative transmembrane protein; putative transmembrane protein complement(283814..286126) Burkholderia ambifaria MC40-6 6179213 YP_001810054.1 CDS BamMC406_3371 NC_010552.1 286145 288913 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bam:Bamb_5209 rhs element Vgr protein; type VI secretion system Vgr family protein complement(286145..288913) Burkholderia ambifaria MC40-6 6179214 YP_001810055.1 CDS BamMC406_3372 NC_010552.1 289660 290910 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5210 major facilitator superfamily MFS_1; major facilitator transporter 289660..290910 Burkholderia ambifaria MC40-6 6179215 YP_001810056.1 CDS BamMC406_3373 NC_010552.1 291069 291998 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5211 transcriptional regulator, LysR family; LysR family transcriptional regulator 291069..291998 Burkholderia ambifaria MC40-6 6179195 YP_001810057.1 CDS BamMC406_3374 NC_010552.1 292113 292607 D KEGG: bam:Bamb_5212 hypothetical protein; hypothetical protein 292113..292607 Burkholderia ambifaria MC40-6 6179196 YP_001810058.1 CDS BamMC406_3375 NC_010552.1 292651 293670 D KEGG: bam:Bamb_5213 hypothetical protein; hypothetical protein 292651..293670 Burkholderia ambifaria MC40-6 6179197 YP_001810059.1 CDS BamMC406_3376 NC_010552.1 293703 295169 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_5214 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 293703..295169 Burkholderia ambifaria MC40-6 6179166 YP_001810060.1 CDS BamMC406_3377 NC_010552.1 295177 296244 D PFAM: iron-containing alcohol dehydrogenase; KEGG: bam:Bamb_5215 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 295177..296244 Burkholderia ambifaria MC40-6 6179167 YP_001810061.1 CDS BamMC406_3378 NC_010552.1 296273 297145 D PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bam:Bamb_5216 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase 296273..297145 Burkholderia ambifaria MC40-6 6179168 YP_001810062.1 CDS BamMC406_3379 NC_010552.1 297151 297462 D PFAM: YCII-related; KEGG: bam:Bamb_5217 YCII-related; YCII-related 297151..297462 Burkholderia ambifaria MC40-6 6179178 YP_001810063.1 CDS BamMC406_3380 NC_010552.1 297466 297801 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_5218 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 297466..297801 Burkholderia ambifaria MC40-6 6179179 YP_001810064.1 CDS BamMC406_3381 NC_010552.1 298036 299124 D PFAM: porin Gram-negative type; KEGG: bam:Bamb_5219 porin, gram-negative type; porin 298036..299124 Burkholderia ambifaria MC40-6 6179180 YP_001810065.1 CDS BamMC406_3382 NC_010552.1 299203 299862 R PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_5220 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(299203..299862) Burkholderia ambifaria MC40-6 6181082 YP_001810066.1 CDS BamMC406_3383 NC_010552.1 299983 300798 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5221 transcriptional regulator, AraC family; AraC family transcriptional regulator 299983..300798 Burkholderia ambifaria MC40-6 6181083 YP_001810067.1 CDS BamMC406_3384 NC_010552.1 301061 301873 D KEGG: bam:Bamb_5222 hypothetical protein; hypothetical protein 301061..301873 Burkholderia ambifaria MC40-6 6179379 YP_001810068.1 CDS BamMC406_3385 NC_010552.1 301941 302270 R hypothetical protein complement(301941..302270) Burkholderia ambifaria MC40-6 6179380 YP_001810069.1 CDS BamMC406_3386 NC_010552.1 302604 303863 D KEGG: plu:plu4328 hypothetical protein; hypothetical protein 302604..303863 Burkholderia ambifaria MC40-6 6179381 YP_001810070.1 CDS BamMC406_3387 NC_010552.1 303860 304351 D KEGG: plu:plu4327 hypothetical protein; hypothetical protein 303860..304351 Burkholderia ambifaria MC40-6 6181007 YP_001810071.1 CDS BamMC406_3388 NC_010552.1 304354 306360 D KEGG: plu:plu4326 hypothetical protein; hypothetical protein 304354..306360 Burkholderia ambifaria MC40-6 6181008 YP_001810072.1 CDS BamMC406_3389 NC_010552.1 307212 311267 D KEGG: bps:BPSL0548 hypothetical protein; hypothetical protein 307212..311267 Burkholderia ambifaria MC40-6 6181009 YP_001810073.1 CDS BamMC406_3390 NC_010552.1 311329 313569 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bvi:Bcep1808_3972 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(311329..313569) Burkholderia ambifaria MC40-6 6180085 YP_001810074.1 CDS BamMC406_3391 NC_010552.1 314035 314697 D PFAM: LemA family protein; KEGG: bte:BTH_I0284 LemA family protein; LemA family protein 314035..314697 Burkholderia ambifaria MC40-6 6180086 YP_001810075.1 CDS BamMC406_3392 NC_010552.1 314715 315548 D PFAM: protein of unknown function DUF477; KEGG: bte:BTH_I0285 lipoprotein, putative; hypothetical protein 314715..315548 Burkholderia ambifaria MC40-6 6180087 YP_001810076.1 CDS BamMC406_3393 NC_010552.1 315551 316048 D PFAM: protein of unknown function DUF477; KEGG: bvi:Bcep1808_3980 protein of unknown function DUF477; hypothetical protein 315551..316048 Burkholderia ambifaria MC40-6 6181297 YP_001810077.1 CDS BamMC406_3394 NC_010552.1 316149 317978 R TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: bam:Bamb_5227 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glucosamine--fructose-6-phosphate aminotransferase complement(316149..317978) Burkholderia ambifaria MC40-6 6181298 YP_001810078.1 CDS BamMC406_3395 NC_010552.1 318135 318626 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_5228 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 318135..318626 Burkholderia ambifaria MC40-6 6181299 YP_001810079.1 CDS BamMC406_3396 NC_010552.1 318656 319510 R KEGG: bam:Bamb_5229 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(318656..319510) Burkholderia ambifaria MC40-6 6181050 YP_001810080.1 CDS BamMC406_3397 NC_010552.1 319588 320406 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5230 transcriptional regulator, AraC family; AraC family transcriptional regulator 319588..320406 Burkholderia ambifaria MC40-6 6181051 YP_001810081.1 CDS BamMC406_3398 NC_010552.1 320420 320953 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: bam:Bamb_5231 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(320420..320953) Burkholderia ambifaria MC40-6 6181052 YP_001810082.1 CDS BamMC406_3399 NC_010552.1 320950 322425 R PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; AlkA domain protein; KEGG: bur:Bcep18194_B2719 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(320950..322425) Burkholderia ambifaria MC40-6 6180430 YP_001810083.1 CDS BamMC406_3400 NC_010552.1 322767 324059 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5234 major facilitator superfamily MFS_1; major facilitator transporter 322767..324059 Burkholderia ambifaria MC40-6 6180431 YP_001810084.1 CDS BamMC406_3401 NC_010552.1 324159 325262 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bch:Bcen2424_3452 transcriptional regulator, LacI family; LacI family transcription regulator complement(324159..325262) Burkholderia ambifaria MC40-6 6180477 YP_001810085.1 CDS BamMC406_3402 NC_010552.1 325377 326213 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bam:Bamb_5236 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 325377..326213 Burkholderia ambifaria MC40-6 6180478 YP_001810086.1 CDS BamMC406_3403 NC_010552.1 326233 326553 R PFAM: protein of unknown function DUF1330; KEGG: bam:Bamb_5237 protein of unknown function DUF1330; hypothetical protein complement(326233..326553) Burkholderia ambifaria MC40-6 6180479 YP_001810087.1 CDS BamMC406_3404 NC_010552.1 326693 327160 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bur:Bcep18194_B2710 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(326693..327160) Burkholderia ambifaria MC40-6 6179413 YP_001810088.1 CDS BamMC406_3405 NC_010552.1 327237 328472 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bch:Bcen2424_3456 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 327237..328472 Burkholderia ambifaria MC40-6 6179414 YP_001810089.1 CDS BamMC406_3406 NC_010552.1 328509 328832 R KEGG: bam:Bamb_5238 hypothetical protein; hypothetical protein complement(328509..328832) Burkholderia ambifaria MC40-6 6179415 YP_001810090.1 CDS BamMC406_3407 NC_010552.1 329452 330084 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_5239 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 329452..330084 Burkholderia ambifaria MC40-6 6180064 YP_001810091.1 CDS BamMC406_3408 NC_010552.1 330212 331840 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_5240 aldehyde dehydrogenase; aldehyde dehydrogenase complement(330212..331840) Burkholderia ambifaria MC40-6 6180065 YP_001810092.1 CDS BamMC406_3409 NC_010552.1 332314 333267 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5241 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(332314..333267) Burkholderia ambifaria MC40-6 6180066 YP_001810093.1 CDS BamMC406_3410 NC_010552.1 333447 334517 D KEGG: bam:Bamb_5242 hypothetical protein; hypothetical protein 333447..334517 Burkholderia ambifaria MC40-6 6180280 YP_001810094.1 CDS BamMC406_3411 NC_010552.1 334744 334941 R PFAM: CsbD family protein; KEGG: bam:Bamb_5243 CsbD family protein; CsbD family protein complement(334744..334941) Burkholderia ambifaria MC40-6 6180281 YP_001810095.1 CDS BamMC406_3412 NC_010552.1 334995 335345 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bam:Bamb_5244 transport-associated; transport-associated complement(334995..335345) Burkholderia ambifaria MC40-6 6180282 YP_001810096.1 CDS BamMC406_3413 NC_010552.1 335434 335598 R KEGG: bam:Bamb_5245 hypothetical protein; hypothetical protein complement(335434..335598) Burkholderia ambifaria MC40-6 6179958 YP_001810097.1 CDS BamMC406_3414 NC_010552.1 335989 337533 D KEGG: bam:Bamb_5247 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; LuxR family transcriptional regulator 335989..337533 Burkholderia ambifaria MC40-6 6179959 YP_001810098.1 CDS BamMC406_3415 NC_010552.1 337697 337888 D PFAM: CsbD family protein; KEGG: bam:Bamb_5248 CsbD family protein; CsbD family protein 337697..337888 Burkholderia ambifaria MC40-6 6179279 YP_001810099.1 CDS BamMC406_3416 NC_010552.1 338302 339453 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_5249 extracellular ligand-binding receptor; extracellular ligand-binding receptor 338302..339453 Burkholderia ambifaria MC40-6 6179280 YP_001810100.1 CDS BamMC406_3417 NC_010552.1 339648 340820 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_5250 FAD dependent oxidoreductase; FAD dependent oxidoreductase 339648..340820 Burkholderia ambifaria MC40-6 6179281 YP_001810101.1 CDS BamMC406_3418 NC_010552.1 341177 341770 D PFAM: heat shock protein DnaJ domain protein; KEGG: bam:Bamb_5251 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 341177..341770 Burkholderia ambifaria MC40-6 6179522 YP_001810102.1 CDS BamMC406_3419 NC_010552.1 341950 343110 D PFAM: Integrase catalytic region; KEGG: reh:H16_B0450 transposase IS30; integrase catalytic subunit 341950..343110 Burkholderia ambifaria MC40-6 6179523 YP_001810103.1 CDS BamMC406_3420 NC_010552.1 343413 344183 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_6913 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(343413..344183) Burkholderia ambifaria MC40-6 6179524 YP_001810104.1 CDS BamMC406_3421 NC_010552.1 344329 344883 R PFAM: OsmC family protein; KEGG: bch:Bcen2424_3268 OsmC family protein; OsmC family protein complement(344329..344883) Burkholderia ambifaria MC40-6 6180541 YP_001810105.1 CDS BamMC406_3422 NC_010552.1 345128 345691 D PFAM: regulatory protein TetR; KEGG: bch:Bcen2424_6911 transcriptional regulator, TetR family; TetR family transcriptional regulator 345128..345691 Burkholderia ambifaria MC40-6 6180542 YP_001810106.1 CDS BamMC406_3423 NC_010552.1 345818 346159 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bch:Bcen2424_6910 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 345818..346159 Burkholderia ambifaria MC40-6 6180543 YP_001810107.1 CDS BamMC406_3424 NC_010552.1 346229 346909 D PFAM: DSBA oxidoreductase; KEGG: bch:Bcen2424_6909 DsbA oxidoreductase; DSBA oxidoreductase 346229..346909 Burkholderia ambifaria MC40-6 6179960 YP_001810108.1 CDS BamMC406_3425 NC_010552.1 347067 348173 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bch:Bcen2424_6908 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 347067..348173 Burkholderia ambifaria MC40-6 6179961 YP_001810109.1 CDS BamMC406_3426 NC_010552.1 348555 349763 D PFAM: aminotransferase class I and II; KEGG: bch:Bcen2424_6907 aminotransferase, class I and II; class I and II aminotransferase 348555..349763 Burkholderia ambifaria MC40-6 6179962 YP_001810110.1 CDS BamMC406_3427 NC_010552.1 349822 350040 D PFAM: 4-oxalocrotonate tautomerase; KEGG: bch:Bcen2424_3262 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 349822..350040 Burkholderia ambifaria MC40-6 6180111 YP_001810111.1 CDS BamMC406_3428 NC_010552.1 350332 352257 D PFAM: nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; KEGG: bch:Bcen2424_6871 DNA polymerase III, alpha subunit; DNA-directed DNA polymerase 350332..352257 Burkholderia ambifaria MC40-6 6180112 YP_001810112.1 CDS BamMC406_3429 NC_010552.1 352440 352784 R KEGG: scl:sce1778 hypothetical protein; hypothetical protein complement(352440..352784) Burkholderia ambifaria MC40-6 6180113 YP_001810113.1 CDS BamMC406_3430 NC_010552.1 352959 353291 R KEGG: mms:mma_2895 hypothetical protein; hypothetical protein complement(352959..353291) Burkholderia ambifaria MC40-6 6180018 YP_001810114.1 CDS BamMC406_3431 NC_010552.1 353512 353796 R hypothetical protein complement(353512..353796) Burkholderia ambifaria MC40-6 6180019 YP_001810115.1 CDS BamMC406_3432 NC_010552.1 353833 354084 R hypothetical protein complement(353833..354084) Burkholderia ambifaria MC40-6 6180168 YP_001810116.1 CDS BamMC406_3433 NC_010552.1 354105 354380 R KEGG: bxe:Bxe_A3519 putative transposase; putative transposase complement(354105..354380) Burkholderia ambifaria MC40-6 6180169 YP_001810117.1 CDS BamMC406_3434 NC_010552.1 354604 354990 R PFAM: regulatory protein MerR; KEGG: bam:Bamb_5255 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(354604..354990) Burkholderia ambifaria MC40-6 6180170 YP_001810118.1 CDS BamMC406_3435 NC_010552.1 355077 355985 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5256 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 355077..355985 Burkholderia ambifaria MC40-6 6180587 YP_001810119.1 CDS BamMC406_3436 NC_010552.1 356014 356586 R PFAM: regulatory protein LuxR; KEGG: bam:Bamb_5257 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(356014..356586) Burkholderia ambifaria MC40-6 6180588 YP_001810120.1 CDS BamMC406_3437 NC_010552.1 356768 357739 R PFAM: peptidase M19 renal dipeptidase; KEGG: bxe:Bxe_B1584 membrane dipeptidase; membrane dipeptidase complement(356768..357739) Burkholderia ambifaria MC40-6 6180589 YP_001810121.1 CDS BamMC406_3438 NC_010552.1 357779 359125 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5260 major facilitator superfamily MFS_1; major facilitator transporter complement(357779..359125) Burkholderia ambifaria MC40-6 6181303 YP_001810122.1 CDS BamMC406_3439 NC_010552.1 359495 360445 D KEGG: bam:Bamb_5261 hypothetical protein; hypothetical protein 359495..360445 Burkholderia ambifaria MC40-6 6181304 YP_001810123.1 CDS BamMC406_3440 NC_010552.1 360605 361804 D PFAM: aminotransferase class I and II; KEGG: bam:Bamb_5262 aminotransferase, class I and II; GntR family transcriptional regulator 360605..361804 Burkholderia ambifaria MC40-6 6181305 YP_001810124.1 CDS BamMC406_3441 NC_010552.1 361815 362003 D KEGG: bur:Bcep18194_B2653 hypothetical protein; hypothetical protein 361815..362003 Burkholderia ambifaria MC40-6 6181162 YP_001810125.1 CDS BamMC406_3442 NC_010552.1 362113 362709 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bam:Bamb_5263 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 362113..362709 Burkholderia ambifaria MC40-6 6181163 YP_001810126.1 CDS BamMC406_3443 NC_010552.1 362883 364160 D PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein; KEGG: bam:Bamb_5264 epoxide hydrolase domain protein; epocide hydrolase domain-containing protein 362883..364160 Burkholderia ambifaria MC40-6 6181164 YP_001810127.1 CDS BamMC406_3444 NC_010552.1 364473 365513 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5265 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 364473..365513 Burkholderia ambifaria MC40-6 6181214 YP_001810128.1 CDS BamMC406_3445 NC_010552.1 365513 366049 D KEGG: bam:Bamb_5266 hypothetical protein; hypothetical protein 365513..366049 Burkholderia ambifaria MC40-6 6181215 YP_001810129.1 CDS BamMC406_3446 NC_010552.1 366140 366331 D hypothetical protein 366140..366331 Burkholderia ambifaria MC40-6 6180958 YP_001810130.1 CDS BamMC406_3447 NC_010552.1 366328 366669 D KEGG: bam:Bamb_5267 hypothetical protein; hypothetical protein 366328..366669 Burkholderia ambifaria MC40-6 6180959 YP_001810131.1 CDS BamMC406_3448 NC_010552.1 366752 367543 D KEGG: bam:Bamb_5268 hypothetical protein; hypothetical protein 366752..367543 Burkholderia ambifaria MC40-6 6180960 YP_001810132.1 CDS BamMC406_3449 NC_010552.1 367651 369054 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 367651..369054 Burkholderia ambifaria MC40-6 6179434 YP_001810133.1 CDS BamMC406_3450 NC_010552.1 369207 369821 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_5270 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(369207..369821) Burkholderia ambifaria MC40-6 6179435 YP_001810134.1 CDS groEL NC_010552.1 369997 371637 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia and high GC gram-positive bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the R. leguminosarum protein in this cluster is transcribed under anaerobic conditions and is not necessary for growth; chaperonin GroEL complement(369997..371637) Burkholderia ambifaria MC40-6 6179436 YP_001810135.1 CDS groES NC_010552.1 371650 371940 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(371650..371940) Burkholderia ambifaria MC40-6 6179539 YP_001810136.1 CDS BamMC406_3453 NC_010552.1 372187 372906 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5275 short chain dehydrogenase; short chain dehydrogenase 372187..372906 Burkholderia ambifaria MC40-6 6179540 YP_001810137.1 CDS BamMC406_3454 NC_010552.1 373053 375002 D PFAM: sulfatase; KEGG: bam:Bamb_5276 sulfatase; sulfatase 373053..375002 Burkholderia ambifaria MC40-6 6179541 YP_001810138.1 CDS BamMC406_3455 NC_010552.1 375013 376062 D PFAM: protein of unknown function DUF323; KEGG: bam:Bamb_5277 protein of unknown function DUF323; hypothetical protein 375013..376062 Burkholderia ambifaria MC40-6 6179302 YP_001810139.1 CDS BamMC406_3456 NC_010552.1 376059 376868 D PFAM: NLPA lipoprotein; KEGG: bam:Bamb_5278 NlpA lipoprotein; NLPA lipoprotein 376059..376868 Burkholderia ambifaria MC40-6 6179303 YP_001810140.1 CDS BamMC406_3457 NC_010552.1 377122 377448 D KEGG: bam:Bamb_5280 hypothetical protein; hypothetical protein 377122..377448 Burkholderia ambifaria MC40-6 6179304 YP_001810141.1 CDS BamMC406_3458 NC_010552.1 377511 378443 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5281 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(377511..378443) Burkholderia ambifaria MC40-6 6179198 YP_001810142.1 CDS BamMC406_3459 NC_010552.1 378649 379422 D PFAM: protein of unknown function DUF1445; KEGG: bam:Bamb_5282 hypothetical protein; hypothetical protein 378649..379422 Burkholderia ambifaria MC40-6 6179199 YP_001810143.1 CDS BamMC406_3460 NC_010552.1 379614 380918 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5283 major facilitator superfamily MFS_1; major facilitator transporter 379614..380918 Burkholderia ambifaria MC40-6 6179200 YP_001810144.1 CDS BamMC406_3461 NC_010552.1 381037 384675 D PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bam:Bamb_5284 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 381037..384675 Burkholderia ambifaria MC40-6 6179271 YP_001810145.1 CDS BamMC406_3462 NC_010552.1 385349 387352 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 385349..387352 Burkholderia ambifaria MC40-6 6179272 YP_001810146.1 CDS BamMC406_3463 NC_010552.1 387409 388272 R regulator of pathogenicity factor RpfF; involved in synthesis of a diffusible signal factor involved in the regulation of extracellular enzymes; enoyl-CoA hydratase complement(387409..388272) Burkholderia ambifaria MC40-6 6180925 YP_001810147.1 CDS BamMC406_3464 NC_010552.1 388702 388890 D KEGG: bam:Bamb_5287 hypothetical protein; hypothetical protein 388702..388890 Burkholderia ambifaria MC40-6 6180926 YP_001810148.1 CDS BamMC406_3465 NC_010552.1 389145 389465 D PFAM: Domain of unknown function DUF1840; KEGG: bam:Bamb_5288 hypothetical protein; hypothetical protein 389145..389465 Burkholderia ambifaria MC40-6 6180927 YP_001810149.1 CDS BamMC406_3466 NC_010552.1 389579 389737 R hypothetical protein complement(389579..389737) Burkholderia ambifaria MC40-6 6180696 YP_001810150.1 CDS BamMC406_3467 NC_010552.1 389782 390063 R KEGG: bam:Bamb_5289 hypothetical protein; hypothetical protein complement(389782..390063) Burkholderia ambifaria MC40-6 6180697 YP_001810151.1 CDS BamMC406_3468 NC_010552.1 390161 390346 R KEGG: bam:Bamb_5290 hypothetical protein; hypothetical protein complement(390161..390346) Burkholderia ambifaria MC40-6 6180698 YP_001810152.1 CDS BamMC406_3469 NC_010552.1 390676 392580 D KEGG: bam:Bamb_5291 hypothetical protein; hypothetical protein 390676..392580 Burkholderia ambifaria MC40-6 6180895 YP_001810153.1 CDS BamMC406_3470 NC_010552.1 392657 392824 D KEGG: bam:Bamb_5292 hypothetical protein; hypothetical protein 392657..392824 Burkholderia ambifaria MC40-6 6180896 YP_001810154.1 CDS BamMC406_3471 NC_010552.1 392917 393951 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5293 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(392917..393951) Burkholderia ambifaria MC40-6 6180897 YP_001810155.1 CDS BamMC406_3472 NC_010552.1 394022 395233 D PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_4036 major facilitator superfamily MFS_1; major facilitator transporter 394022..395233 Burkholderia ambifaria MC40-6 6180811 YP_001810156.1 CDS BamMC406_3473 NC_010552.1 395379 396146 R KEGG: bam:Bamb_5295 PEP phosphonomutase; PEP phosphonomutase complement(395379..396146) Burkholderia ambifaria MC40-6 6180812 YP_001810157.1 CDS BamMC406_3474 NC_010552.1 396133 397188 R PFAM: Saccharopine dehydrogenase; KEGG: bam:Bamb_5296 saccharopine dehydrogenase; saccharopine dehydrogenase complement(396133..397188) Burkholderia ambifaria MC40-6 6180813 YP_001810158.1 CDS BamMC406_3475 NC_010552.1 397308 397901 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_5297 transcriptional regulator, TetR family; TetR family transcriptional regulator 397308..397901 Burkholderia ambifaria MC40-6 6179350 YP_001810159.1 CDS BamMC406_3476 NC_010552.1 397932 398399 R PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; KEGG: bam:Bamb_5298 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(397932..398399) Burkholderia ambifaria MC40-6 6179351 YP_001810160.1 CDS BamMC406_3477 NC_010552.1 398482 398850 D KEGG: bam:Bamb_5299 hypothetical protein; hypothetical protein 398482..398850 Burkholderia ambifaria MC40-6 6179502 YP_001810161.1 CDS BamMC406_3478 NC_010552.1 398925 399542 D PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_5300 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 398925..399542 Burkholderia ambifaria MC40-6 6179503 YP_001810162.1 CDS BamMC406_3479 NC_010552.1 399784 402477 D TIGRFAM: Rhs element Vgr protein; KEGG: rme:Rmet_4796 rhs element Vgr protein; Rhs element Vgr protein 399784..402477 Burkholderia ambifaria MC40-6 6179504 YP_001810163.1 CDS BamMC406_3480 NC_010552.1 402520 407382 D TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: rme:Rmet_4797 YD repeat; YD repeat-containing protein 402520..407382 Burkholderia ambifaria MC40-6 6179489 YP_001810164.1 CDS BamMC406_3481 NC_010552.1 407379 407702 D hypothetical protein 407379..407702 Burkholderia ambifaria MC40-6 6179490 YP_001810165.1 CDS BamMC406_3482 NC_010552.1 408877 409599 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_5301 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(408877..409599) Burkholderia ambifaria MC40-6 6179491 YP_001810166.1 CDS BamMC406_3483 NC_010552.1 409629 410600 R PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: bam:Bamb_5302 ornithine cyclodeaminase; ornithine cyclodeaminase complement(409629..410600) Burkholderia ambifaria MC40-6 6179401 YP_001810167.1 CDS BamMC406_3484 NC_010552.1 410731 411861 R PFAM: alanine racemase domain protein; KEGG: bam:Bamb_5303 alanine racemase domain protein; alanine racemase domain-containing protein complement(410731..411861) Burkholderia ambifaria MC40-6 6179402 YP_001810168.1 CDS BamMC406_3485 NC_010552.1 411976 412902 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5304 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(411976..412902) Burkholderia ambifaria MC40-6 6179403 YP_001810169.1 CDS BamMC406_3486 NC_010552.1 413002 413916 R PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_5305 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(413002..413916) Burkholderia ambifaria MC40-6 6180366 YP_001810170.1 CDS BamMC406_3487 NC_010552.1 414060 414500 D PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: bam:Bamb_5306 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 414060..414500 Burkholderia ambifaria MC40-6 6180367 YP_001810171.1 CDS BamMC406_3488 NC_010552.1 414760 415350 D KEGG: bam:Bamb_5307 hypothetical protein; hypothetical protein 414760..415350 Burkholderia ambifaria MC40-6 6180368 YP_001810172.1 CDS BamMC406_3489 NC_010552.1 415347 417188 D KEGG: bam:Bamb_5308 molecular chaperone-like protein; molecular chaperone-like protein 415347..417188 Burkholderia ambifaria MC40-6 6180550 YP_001810173.1 CDS BamMC406_3490 NC_010552.1 417194 419950 D KEGG: bam:Bamb_5309 molecular chaperone-like protein; molecular chaperone-like protein 417194..419950 Burkholderia ambifaria MC40-6 6180551 YP_001810174.1 CDS BamMC406_3491 NC_010552.1 420040 421041 R KEGG: bam:Bamb_5310 amidinotransferase; amidinotransferase complement(420040..421041) Burkholderia ambifaria MC40-6 6180552 YP_001810175.1 CDS BamMC406_3492 NC_010552.1 421101 422180 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(421101..422180) Burkholderia ambifaria MC40-6 6179687 YP_001810176.1 CDS BamMC406_3493 NC_010552.1 422482 422913 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_5312 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 422482..422913 Burkholderia ambifaria MC40-6 6179688 YP_001810177.1 CDS BamMC406_3494 NC_010552.1 423023 424444 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: bam:Bamb_5324 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(423023..424444) Burkholderia ambifaria MC40-6 6180495 YP_001810178.1 CDS BamMC406_3495 NC_010552.1 424431 425096 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_5325 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(424431..425096) Burkholderia ambifaria MC40-6 6180496 YP_001810179.1 CDS BamMC406_3496 NC_010552.1 425344 426360 D KEGG: bam:Bamb_5326 ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand binding protein 425344..426360 Burkholderia ambifaria MC40-6 6180497 YP_001810180.1 CDS BamMC406_3497 NC_010552.1 426462 427772 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5327 major facilitator superfamily MFS_1; major facilitator transporter 426462..427772 Burkholderia ambifaria MC40-6 6180212 YP_001810181.1 CDS BamMC406_3498 NC_010552.1 427817 429607 R PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bam:Bamb_5329 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(427817..429607) Burkholderia ambifaria MC40-6 6180213 YP_001810182.1 CDS BamMC406_3499 NC_010552.1 429604 430215 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_5330 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(429604..430215) Burkholderia ambifaria MC40-6 6180214 YP_001810183.1 CDS BamMC406_3500 NC_010552.1 430558 431010 D KEGG: bam:Bamb_5331 hypothetical protein; hypothetical protein 430558..431010 Burkholderia ambifaria MC40-6 6180573 YP_001810184.1 CDS BamMC406_3501 NC_010552.1 431113 433131 D KEGG: bam:Bamb_5332 DedA family membrane protein; DedA family membrane protein 431113..433131 Burkholderia ambifaria MC40-6 6180574 YP_001810185.1 CDS BamMC406_3502 NC_010552.1 433147 433476 R TIGRFAM: addiction module antidote protein; KEGG: bam:Bamb_5333 putative transcriptional regulator; putative transcriptional regulator complement(433147..433476) Burkholderia ambifaria MC40-6 6180575 YP_001810186.1 CDS BamMC406_3503 NC_010552.1 433473 433805 R TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: bam:Bamb_5334 protein of unknown function DUF891; addiction module killer protein complement(433473..433805) Burkholderia ambifaria MC40-6 6179844 YP_001810187.1 CDS BamMC406_3504 NC_010552.1 434033 434293 R KEGG: bur:Bcep18194_B2515 protein tyrosine phosphatase; protein tyrosine phosphatase complement(434033..434293) Burkholderia ambifaria MC40-6 6179845 YP_001810188.1 CDS BamMC406_3505 NC_010552.1 434367 436823 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bam:Bamb_5336 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(434367..436823) Burkholderia ambifaria MC40-6 6179846 YP_001810189.1 CDS BamMC406_3506 NC_010552.1 436810 438537 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bam:Bamb_5337 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(436810..438537) Burkholderia ambifaria MC40-6 6181145 YP_001810190.1 CDS BamMC406_3507 NC_010552.1 438564 438701 R KEGG: bam:Bamb_5339 hypothetical protein; hypothetical protein complement(438564..438701) Burkholderia ambifaria MC40-6 6181146 YP_001810191.1 CDS BamMC406_3508 NC_010552.1 438844 439902 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5340 transcriptional regulator, AraC family; AraC family transcriptional regulator 438844..439902 Burkholderia ambifaria MC40-6 6179943 YP_001810192.1 CDS BamMC406_3509 NC_010552.1 439943 440452 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_5341 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 439943..440452 Burkholderia ambifaria MC40-6 6179944 YP_001810193.1 CDS BamMC406_3510 NC_010552.1 440461 441414 R KEGG: bam:Bamb_5342 hypothetical protein; hypothetical protein complement(440461..441414) Burkholderia ambifaria MC40-6 6179945 YP_001810194.1 CDS BamMC406_3511 NC_010552.1 441473 441595 R KEGG: bam:Bamb_5343 hypothetical protein; hypothetical protein complement(441473..441595) Burkholderia ambifaria MC40-6 6179689 YP_001810195.1 CDS BamMC406_3512 NC_010552.1 441956 442411 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bur:Bcep18194_B2509 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(441956..442411) Burkholderia ambifaria MC40-6 6179690 YP_001810196.1 CDS BamMC406_3513 NC_010552.1 442528 443073 D PFAM: protein of unknown function DUF1234; KEGG: bur:Bcep18194_B2508 protein of unknown function DUF1234; hypothetical protein 442528..443073 Burkholderia ambifaria MC40-6 6179691 YP_001810197.1 CDS BamMC406_3514 NC_010552.1 443342 444589 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5344 major facilitator superfamily MFS_1; major facilitator transporter 443342..444589 Burkholderia ambifaria MC40-6 6181243 YP_001810198.1 CDS BamMC406_3515 NC_010552.1 444652 445197 R TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit; PFAM: flavin reductase domain protein FMN-binding; KEGG: bam:Bamb_5345 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit; 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit complement(444652..445197) Burkholderia ambifaria MC40-6 6181244 YP_001810199.1 CDS BamMC406_3516 NC_010552.1 445554 446186 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bam:Bamb_5346 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 445554..446186 Burkholderia ambifaria MC40-6 6181245 YP_001810200.1 CDS BamMC406_3517 NC_010552.1 446239 446982 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B2504 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(446239..446982) Burkholderia ambifaria MC40-6 6181165 YP_001810201.1 CDS BamMC406_3518 NC_010552.1 447039 448163 R PFAM: Amidase; KEGG: bam:Bamb_5348 amidase; amidase complement(447039..448163) Burkholderia ambifaria MC40-6 6181166 YP_001810202.1 CDS BamMC406_3519 NC_010552.1 448196 448747 R KEGG: bam:Bamb_5349 hypothetical protein; hypothetical protein complement(448196..448747) Burkholderia ambifaria MC40-6 6181167 YP_001810203.1 CDS BamMC406_3520 NC_010552.1 448756 449133 R KEGG: bam:Bamb_5350 hypothetical protein; hypothetical protein complement(448756..449133) Burkholderia ambifaria MC40-6 6181377 YP_001810204.1 CDS BamMC406_3521 NC_010552.1 449187 450380 R PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_5351 acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase type 2 complement(449187..450380) Burkholderia ambifaria MC40-6 6181378 YP_001810205.1 CDS BamMC406_3522 NC_010552.1 450831 452360 D KEGG: bam:Bamb_5352 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 450831..452360 Burkholderia ambifaria MC40-6 6181379 YP_001810206.1 CDS BamMC406_3523 NC_010552.1 452423 452809 R TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: bam:Bamb_5353 4-oxalocrotonate tautomerase family enzyme; 4-oxalocrotonate tautomerase complement(452423..452809) Burkholderia ambifaria MC40-6 6179297 YP_001810207.1 CDS BamMC406_3524 NC_010552.1 452875 453378 R PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: bam:Bamb_5354 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta complement(452875..453378) Burkholderia ambifaria MC40-6 6179298 YP_001810208.1 CDS BamMC406_3525 NC_010552.1 453375 454658 R PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: bam:Bamb_5355 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(453375..454658) Burkholderia ambifaria MC40-6 6179225 YP_001810209.1 CDS BamMC406_3526 NC_010552.1 454798 455718 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5356 transcriptional regulator, LysR family; LysR family transcriptional regulator 454798..455718 Burkholderia ambifaria MC40-6 6179226 YP_001810210.1 CDS BamMC406_3527 NC_010552.1 455834 456814 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_5357 ferredoxin; ferredoxin complement(455834..456814) Burkholderia ambifaria MC40-6 6179227 YP_001810211.1 CDS BamMC406_3528 NC_010552.1 456971 458377 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5358 major facilitator superfamily MFS_1; major facilitator transporter complement(456971..458377) Burkholderia ambifaria MC40-6 6179117 YP_001810212.1 CDS BamMC406_3529 NC_010552.1 458789 459919 D PFAM: porin Gram-negative type; KEGG: bam:Bamb_5359 porin, gram-negative type; porin 458789..459919 Burkholderia ambifaria MC40-6 6179118 YP_001810213.1 CDS BamMC406_3530 NC_010552.1 459952 460989 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5360 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(459952..460989) Burkholderia ambifaria MC40-6 6179119 YP_001810214.1 CDS BamMC406_3531 NC_010552.1 460986 461960 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5361 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(460986..461960) Burkholderia ambifaria MC40-6 6179684 YP_001810215.1 CDS BamMC406_3532 NC_010552.1 462110 463216 D PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bam:Bamb_5362 NAD/NADP octopine/nopaline dehydrogenase; NAD/NADP octopine/nopaline dehydrogenase 462110..463216 Burkholderia ambifaria MC40-6 6179685 YP_001810216.1 CDS BamMC406_3533 NC_010552.1 463213 464223 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 463213..464223 Burkholderia ambifaria MC40-6 6179686 YP_001810217.1 CDS BamMC406_3534 NC_010552.1 464250 465632 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5364 major facilitator superfamily MFS_1; major facilitator transporter complement(464250..465632) Burkholderia ambifaria MC40-6 6179788 YP_001810218.1 CDS BamMC406_3535 NC_010552.1 465808 466854 R PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_5370 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(465808..466854) Burkholderia ambifaria MC40-6 6179789 YP_001810219.1 CDS BamMC406_3536 NC_010552.1 466851 467999 R PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_5371 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(466851..467999) Burkholderia ambifaria MC40-6 6179790 YP_001810220.1 CDS BamMC406_3537 NC_010552.1 467992 469437 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_5372 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein complement(467992..469437) Burkholderia ambifaria MC40-6 6179332 YP_001810221.1 CDS BamMC406_3538 NC_010552.1 469434 469778 R KEGG: bam:Bamb_5373 hypothetical protein; hypothetical protein complement(469434..469778) Burkholderia ambifaria MC40-6 6179333 YP_001810222.1 CDS BamMC406_3539 NC_010552.1 469781 470575 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_5374 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(469781..470575) Burkholderia ambifaria MC40-6 6180506 YP_001810223.1 CDS BamMC406_3540 NC_010552.1 470572 471552 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_5375 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(470572..471552) Burkholderia ambifaria MC40-6 6180507 YP_001810224.1 CDS BamMC406_3541 NC_010552.1 471553 472635 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_5376 ABC transporter related; ABC transporter-like protein complement(471553..472635) Burkholderia ambifaria MC40-6 6180508 YP_001810225.1 CDS BamMC406_3542 NC_010552.1 472928 473815 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_5378 transcriptional regulator, IclR family; IclR family transcriptional regulator 472928..473815 Burkholderia ambifaria MC40-6 6179946 YP_001810226.1 CDS BamMC406_3543 NC_010552.1 474013 475575 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_5380 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(474013..475575) Burkholderia ambifaria MC40-6 6179947 YP_001810227.1 CDS BamMC406_3544 NC_010552.1 475866 477344 R PFAM: phosphoesterase; KEGG: bam:Bamb_5381 phosphoesterase; phosphoesterase complement(475866..477344) Burkholderia ambifaria MC40-6 6179948 YP_001810228.1 CDS BamMC406_3545 NC_010552.1 477939 478322 D KEGG: bam:Bamb_5383 hypothetical protein; hypothetical protein 477939..478322 Burkholderia ambifaria MC40-6 6179726 YP_001810229.1 CDS BamMC406_3546 NC_010552.1 478532 479761 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5384 major facilitator superfamily MFS_1; major facilitator transporter complement(478532..479761) Burkholderia ambifaria MC40-6 6179727 YP_001810230.1 CDS BamMC406_3547 NC_010552.1 479985 480866 R SMART: helix-turn-helix domain protein; KEGG: bam:Bamb_5385 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(479985..480866) Burkholderia ambifaria MC40-6 6179728 YP_001810231.1 CDS BamMC406_3548 NC_010552.1 480962 481855 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bam:Bamb_5386 3-beta hydroxysteroid dehydrogenase/isomerase; NAD-dependent epimerase/dehydratase 480962..481855 Burkholderia ambifaria MC40-6 6181231 YP_001810232.1 CDS BamMC406_3549 NC_010552.1 481910 482320 R KEGG: bam:Bamb_5387 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(481910..482320) Burkholderia ambifaria MC40-6 6181232 YP_001810233.1 CDS BamMC406_3550 NC_010552.1 482307 482516 R PFAM: regulatory protein LysR; KEGG: bam:Bamb_5389 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(482307..482516) Burkholderia ambifaria MC40-6 6181233 YP_001810234.1 CDS BamMC406_3551 NC_010552.1 482613 483989 R Enables the enzymatic reduction of mercuric ions to elemental mercury; mercuric reductase complement(482613..483989) Burkholderia ambifaria MC40-6 6180657 YP_001810235.1 CDS BamMC406_3552 NC_010552.1 484009 485295 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5391 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(484009..485295) Burkholderia ambifaria MC40-6 6180658 YP_001810236.1 CDS BamMC406_3553 NC_010552.1 485340 486506 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_5392 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein 485340..486506 Burkholderia ambifaria MC40-6 6180659 YP_001810237.1 CDS BamMC406_3554 NC_010552.1 486669 488036 D PFAM: sodium:dicarboxylate symporter; KEGG: bam:Bamb_5393 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 486669..488036 Burkholderia ambifaria MC40-6 6179437 YP_001810238.1 CDS BamMC406_3555 NC_010552.1 488103 488696 R KEGG: bam:Bamb_5394 hypothetical protein; hypothetical protein complement(488103..488696) Burkholderia ambifaria MC40-6 6179438 YP_001810239.1 CDS BamMC406_3556 NC_010552.1 488992 489630 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_5396 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 488992..489630 Burkholderia ambifaria MC40-6 6181024 YP_001810240.1 CDS BamMC406_3557 NC_010552.1 489749 490960 R KEGG: bam:Bamb_5397 hypothetical protein; hypothetical protein complement(489749..490960) Burkholderia ambifaria MC40-6 6181025 YP_001810241.1 CDS BamMC406_3558 NC_010552.1 491489 492244 D KEGG: bam:Bamb_5399 hypothetical protein; hypothetical protein 491489..492244 Burkholderia ambifaria MC40-6 6181026 YP_001810242.1 CDS BamMC406_3559 NC_010552.1 492539 495346 D PFAM: protein of unknown function DUF802; KEGG: bch:Bcen2424_3654 protein of unknown function DUF802; hypothetical protein 492539..495346 Burkholderia ambifaria MC40-6 6180854 YP_001810243.1 CDS BamMC406_3560 NC_010552.1 495350 495994 D PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_5401 hypothetical protein; hypothetical protein 495350..495994 Burkholderia ambifaria MC40-6 6180855 YP_001810244.1 CDS BamMC406_3561 NC_010552.1 495991 496617 D KEGG: bam:Bamb_5402 hypothetical protein; hypothetical protein 495991..496617 Burkholderia ambifaria MC40-6 6180856 YP_001810245.1 CDS BamMC406_3562 NC_010552.1 496647 497219 R PFAM: NADPH-dependent FMN reductase; KEGG: bam:Bamb_5403 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(496647..497219) Burkholderia ambifaria MC40-6 6179641 YP_001810246.1 CDS BamMC406_3563 NC_010552.1 497274 497969 R KEGG: bam:Bamb_5404 hypothetical protein; hypothetical protein complement(497274..497969) Burkholderia ambifaria MC40-6 6179642 YP_001810247.1 CDS BamMC406_3564 NC_010552.1 498561 499844 R KEGG: bam:Bamb_5406 hypothetical protein; hypothetical protein complement(498561..499844) Burkholderia ambifaria MC40-6 6179643 YP_001810248.1 CDS BamMC406_3565 NC_010552.1 499965 501254 R KEGG: bam:Bamb_5407 collagen triple helix repeat; triple helix repeat-containing collagen complement(499965..501254) Burkholderia ambifaria MC40-6 6180174 YP_001810249.1 CDS BamMC406_3566 NC_010552.1 502441 502839 D PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_5410 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 502441..502839 Burkholderia ambifaria MC40-6 6180175 YP_001810250.1 CDS BamMC406_3567 NC_010552.1 502917 503903 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5411 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(502917..503903) Burkholderia ambifaria MC40-6 6180176 YP_001810251.1 CDS BamMC406_3568 NC_010552.1 503911 505473 R PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_5412 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(503911..505473) Burkholderia ambifaria MC40-6 6179546 YP_001810252.1 CDS BamMC406_3569 NC_010552.1 505470 506396 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5413 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(505470..506396) Burkholderia ambifaria MC40-6 6179547 YP_001810253.1 CDS BamMC406_3570 NC_010552.1 506481 507140 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_5414 transcriptional regulator, TetR family; TetR family transcriptional regulator 506481..507140 Burkholderia ambifaria MC40-6 6179439 YP_001810254.1 CDS BamMC406_3571 NC_010552.1 507361 507624 R KEGG: bam:Bamb_5415 hypothetical protein; hypothetical protein complement(507361..507624) Burkholderia ambifaria MC40-6 6179440 YP_001810255.1 CDS BamMC406_3572 NC_010552.1 507760 508698 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5416 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(507760..508698) Burkholderia ambifaria MC40-6 6179441 YP_001810256.1 CDS BamMC406_3573 NC_010552.1 508826 509470 D PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_5417 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 508826..509470 Burkholderia ambifaria MC40-6 6179859 YP_001810257.1 CDS BamMC406_3574 NC_010552.1 509510 511564 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bam:Bamb_5418 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 509510..511564 Burkholderia ambifaria MC40-6 6179860 YP_001810258.1 CDS BamMC406_3575 NC_010552.1 511686 511889 D KEGG: bam:Bamb_5419 hypothetical protein; hypothetical protein 511686..511889 Burkholderia ambifaria MC40-6 6179861 YP_001810259.1 CDS BamMC406_3576 NC_010552.1 512370 514601 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_5420 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 512370..514601 Burkholderia ambifaria MC40-6 6181331 YP_001810260.1 CDS BamMC406_3577 NC_010552.1 514661 515272 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: bam:Bamb_5421 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 514661..515272 Burkholderia ambifaria MC40-6 6181332 YP_001810261.1 CDS BamMC406_3578 NC_010552.1 515309 516499 D PFAM: aminoglycoside phosphotransferase; KEGG: bam:Bamb_5422 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 515309..516499 Burkholderia ambifaria MC40-6 6181333 YP_001810262.1 CDS BamMC406_3579 NC_010552.1 516655 516939 R KEGG: bam:Bamb_5423 hypothetical protein; hypothetical protein complement(516655..516939) Burkholderia ambifaria MC40-6 6181159 YP_001810263.1 CDS BamMC406_3580 NC_010552.1 517022 517498 D KEGG: bam:Bamb_5424 hypothetical protein; hypothetical protein 517022..517498 Burkholderia ambifaria MC40-6 6181160 YP_001810264.1 CDS BamMC406_3581 NC_010552.1 517715 518317 R PFAM: regulatory protein TetR; KEGG: mgi:Mflv_0297 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(517715..518317) Burkholderia ambifaria MC40-6 6181161 YP_001810265.1 CDS BamMC406_3582 NC_010552.1 518393 519193 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mgi:Mflv_0296 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 518393..519193 Burkholderia ambifaria MC40-6 6180645 YP_001810266.1 CDS BamMC406_3583 NC_010552.1 519403 519495 R hypothetical protein complement(519403..519495) Burkholderia ambifaria MC40-6 6180646 YP_001810267.1 CDS BamMC406_3584 NC_010552.1 519636 520931 R KEGG: bam:Bamb_5428 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(519636..520931) Burkholderia ambifaria MC40-6 6180647 YP_001810268.1 CDS BamMC406_3585 NC_010552.1 521106 522254 R PFAM: protein of unknown function DUF1176; KEGG: bur:Bcep18194_B2419 hypothetical protein; hypothetical protein complement(521106..522254) Burkholderia ambifaria MC40-6 6180726 YP_001810269.1 CDS BamMC406_3586 NC_010552.1 522448 523260 R KEGG: bam:Bamb_5431 nucleotidyltransferase-like protein; nucleotidyltransferase-like protein complement(522448..523260) Burkholderia ambifaria MC40-6 6180727 YP_001810270.1 CDS BamMC406_3587 NC_010552.1 523316 524551 R PFAM: protein of unknown function UPF0027; KEGG: bam:Bamb_5432 protein of unknown function UPF0027; hypothetical protein complement(523316..524551) Burkholderia ambifaria MC40-6 6180462 YP_001810271.1 CDS BamMC406_3588 NC_010552.1 524604 525743 R PFAM: band 7 protein; KEGG: bam:Bamb_5433 band 7 protein; hypothetical protein complement(524604..525743) Burkholderia ambifaria MC40-6 6180463 YP_001810272.1 CDS BamMC406_3589 NC_010552.1 526411 528027 D PFAM: sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_5434 regulator of RNA terminal phosphate cyclase; regulator of RNA terminal phosphate cyclase 526411..528027 Burkholderia ambifaria MC40-6 6179873 YP_001810273.1 CDS BamMC406_3590 NC_010552.1 528052 528813 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_5435 methyltransferase type 12; type 12 methyltransferase complement(528052..528813) Burkholderia ambifaria MC40-6 6179329 YP_001810274.1 CDS BamMC406_3591 NC_010552.1 528828 529457 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_5436 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(528828..529457) Burkholderia ambifaria MC40-6 6179330 YP_001810275.1 CDS BamMC406_3592 NC_010552.1 529542 530462 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5439 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(529542..530462) Burkholderia ambifaria MC40-6 6179331 YP_001810276.1 CDS BamMC406_3593 NC_010552.1 530559 531641 D KEGG: bam:Bamb_5440 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 530559..531641 Burkholderia ambifaria MC40-6 6180339 YP_001810277.1 CDS BamMC406_3594 NC_010552.1 531834 533144 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5441 major facilitator superfamily MFS_1; major facilitator transporter 531834..533144 Burkholderia ambifaria MC40-6 6180340 YP_001810278.1 CDS BamMC406_3595 NC_010552.1 533206 533733 R KEGG: bch:Bcen2424_3711 hypothetical protein; hypothetical protein complement(533206..533733) Burkholderia ambifaria MC40-6 6180341 YP_001810279.1 CDS BamMC406_3596 NC_010552.1 535185 536522 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(535185..536522) Burkholderia ambifaria MC40-6 6179154 YP_001810280.1 CDS BamMC406_3597 NC_010552.1 536866 537936 R KEGG: bam:Bamb_5453 membrane protein; membrane protein complement(536866..537936) Burkholderia ambifaria MC40-6 6179155 YP_001810281.1 CDS BamMC406_3598 NC_010552.1 538108 539640 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bam:Bamb_5454 diguanylate cyclase; diguanylate cyclase complement(538108..539640) Burkholderia ambifaria MC40-6 6179156 YP_001810282.1 CDS BamMC406_3599 NC_010552.1 540175 541710 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_5455 amino acid permease-associated region; amino acid permease-associated protein 540175..541710 Burkholderia ambifaria MC40-6 6179935 YP_001810283.1 CDS BamMC406_3600 NC_010552.1 541970 542215 D KEGG: bam:Bamb_5456 hypothetical protein; hypothetical protein 541970..542215 Burkholderia ambifaria MC40-6 6179936 YP_001810284.1 CDS BamMC406_3601 NC_010552.1 542469 543386 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5457 transcriptional regulator, LysR family; LysR family transcriptional regulator 542469..543386 Burkholderia ambifaria MC40-6 6179186 YP_001810285.1 CDS BamMC406_3602 NC_010552.1 543502 544344 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5458 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 543502..544344 Burkholderia ambifaria MC40-6 6179187 YP_001810286.1 CDS BamMC406_3603 NC_010552.1 544388 544741 R KEGG: bam:Bamb_5459 hypothetical protein; hypothetical protein complement(544388..544741) Burkholderia ambifaria MC40-6 6179188 YP_001810287.1 CDS BamMC406_3604 NC_010552.1 544950 545564 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_5460 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(544950..545564) Burkholderia ambifaria MC40-6 6179835 YP_001810288.1 CDS BamMC406_3605 NC_010552.1 545663 546904 D PFAM: glycosyl transferase family 28; KEGG: bam:Bamb_5461 glycosyl transferase, family 28; sterol 3-beta-glucosyltransferase 545663..546904 Burkholderia ambifaria MC40-6 6179836 YP_001810289.1 CDS BamMC406_3606 NC_010552.1 546921 547616 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bam:Bamb_5462 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor complement(546921..547616) Burkholderia ambifaria MC40-6 6179837 YP_001810290.1 CDS BamMC406_3607 NC_010552.1 548197 548886 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_5464 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 548197..548886 Burkholderia ambifaria MC40-6 6179565 YP_001810291.1 CDS BamMC406_3608 NC_010552.1 548883 549596 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_5465 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 548883..549596 Burkholderia ambifaria MC40-6 6179566 YP_001810292.1 CDS BamMC406_3609 NC_010552.1 549615 550382 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_5466 ABC transporter related; ABC transporter-like protein 549615..550382 Burkholderia ambifaria MC40-6 6179567 YP_001810293.1 CDS BamMC406_3610 NC_010552.1 550592 551026 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: bur:Bcep18194_B2367 hypothetical protein; cupin 2 domain-containing protein 550592..551026 Burkholderia ambifaria MC40-6 6179675 YP_001810294.1 CDS BamMC406_3611 NC_010552.1 551356 551493 D KEGG: bch:Bcen2424_3729 hypothetical protein; hypothetical protein 551356..551493 Burkholderia ambifaria MC40-6 6179676 YP_001810295.1 CDS BamMC406_3612 NC_010552.1 551556 552023 D KEGG: bur:Bcep18194_B2366 hypothetical protein; hypothetical protein 551556..552023 Burkholderia ambifaria MC40-6 6179677 YP_001810296.1 CDS BamMC406_3613 NC_010552.1 552163 553500 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bur:Bcep18194_B2365 polyhydroxyalkanoate depolymerase; polyhydroxyalkanoate depolymerase complement(552163..553500) Burkholderia ambifaria MC40-6 6181530 YP_001810297.1 CDS BamMC406_3614 NC_010552.1 553790 554452 D PFAM: Glutathione S-transferase domain; KEGG: bur:Bcep18194_B2364 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 553790..554452 Burkholderia ambifaria MC40-6 6181531 YP_001810298.1 CDS BamMC406_3615 NC_010552.1 554707 555945 D PFAM: cyclic nucleotide-binding; KEGG: bam:Bamb_5468 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 554707..555945 Burkholderia ambifaria MC40-6 6181532 YP_001810299.1 CDS BamMC406_3616 NC_010552.1 555969 556733 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: bam:Bamb_5469 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 555969..556733 Burkholderia ambifaria MC40-6 6179534 YP_001810300.1 CDS BamMC406_3617 NC_010552.1 556752 557438 D PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_5470 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 556752..557438 Burkholderia ambifaria MC40-6 6179535 YP_001810301.1 CDS BamMC406_3618 NC_010552.1 557588 559450 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_5471 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 557588..559450 Burkholderia ambifaria MC40-6 6179969 YP_001810302.1 CDS BamMC406_3619 NC_010552.1 559553 560341 D KEGG: bam:Bamb_5472 hypothetical protein; hypothetical protein 559553..560341 Burkholderia ambifaria MC40-6 6179970 YP_001810303.1 CDS BamMC406_3620 NC_010552.1 560427 561644 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: bam:Bamb_5473 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(560427..561644) Burkholderia ambifaria MC40-6 6179971 YP_001810304.1 CDS BamMC406_3621 NC_010552.1 562884 564413 D PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_5475 glycosyl transferase, family 2; glycosyl transferase family protein 562884..564413 Burkholderia ambifaria MC40-6 6179929 YP_001810305.1 CDS BamMC406_3622 NC_010552.1 564417 565412 D KEGG: bam:Bamb_5476 hypothetical protein; hypothetical protein 564417..565412 Burkholderia ambifaria MC40-6 6179930 YP_001810306.1 CDS BamMC406_3623 NC_010552.1 565426 566466 D KEGG: bam:Bamb_5477 hypothetical protein; hypothetical protein 565426..566466 Burkholderia ambifaria MC40-6 6179931 YP_001810307.1 CDS BamMC406_3624 NC_010552.1 566481 567236 D KEGG: bam:Bamb_5478 hypothetical protein; hypothetical protein 566481..567236 Burkholderia ambifaria MC40-6 6179796 YP_001810308.1 CDS BamMC406_3625 NC_010552.1 567589 569748 D KEGG: bam:Bamb_5479 outer membrane protein; outer membrane protein 567589..569748 Burkholderia ambifaria MC40-6 6179797 YP_001810309.1 CDS BamMC406_3626 NC_010552.1 569840 570928 D KEGG: bam:Bamb_5480 hypothetical protein; hypothetical protein 569840..570928 Burkholderia ambifaria MC40-6 6179798 YP_001810310.1 CDS BamMC406_3627 NC_010552.1 570988 572805 D TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: bam:Bamb_5481 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glucosamine--fructose-6-phosphate aminotransferase 570988..572805 Burkholderia ambifaria MC40-6 6181001 YP_001810311.1 CDS BamMC406_3628 NC_010552.1 572905 573882 R KEGG: bam:Bamb_5482 hypothetical protein; hypothetical protein complement(572905..573882) Burkholderia ambifaria MC40-6 6181002 YP_001810312.1 CDS BamMC406_3629 NC_010552.1 574202 574612 D KEGG: bam:Bamb_5483 hypothetical protein; hypothetical protein 574202..574612 Burkholderia ambifaria MC40-6 6181003 YP_001810313.1 CDS BamMC406_3630 NC_010552.1 574680 576122 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_5484 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(574680..576122) Burkholderia ambifaria MC40-6 6179237 YP_001810314.1 CDS BamMC406_3631 NC_010552.1 576139 577713 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5485 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(576139..577713) Burkholderia ambifaria MC40-6 6179238 YP_001810315.1 CDS BamMC406_3632 NC_010552.1 577727 578818 R PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_5486 secretion protein HlyD family protein; secretion protein HlyD family protein complement(577727..578818) Burkholderia ambifaria MC40-6 6180076 YP_001810316.1 CDS BamMC406_3633 NC_010552.1 578883 579314 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_5487 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(578883..579314) Burkholderia ambifaria MC40-6 6180077 YP_001810317.1 CDS BamMC406_3634 NC_010552.1 579422 580342 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5488 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(579422..580342) Burkholderia ambifaria MC40-6 6180078 YP_001810318.1 CDS BamMC406_3635 NC_010552.1 580451 580879 D PFAM: regulatory protein MarR; KEGG: bam:Bamb_5489 transcriptional regulator, MarR family; MarR family transcriptional regulator 580451..580879 Burkholderia ambifaria MC40-6 6179779 YP_001810319.1 CDS BamMC406_3636 NC_010552.1 580947 582194 D PFAM: protein of unknown function DUF521; KEGG: bam:Bamb_5490 protein of unknown function DUF521; hypothetical protein 580947..582194 Burkholderia ambifaria MC40-6 6179780 YP_001810320.1 CDS BamMC406_3637 NC_010552.1 582187 582636 D PFAM: protein of unknown function DUF126; KEGG: bam:Bamb_5491 protein of unknown function DUF126; hypothetical protein 582187..582636 Burkholderia ambifaria MC40-6 6179781 YP_001810321.1 CDS BamMC406_3638 NC_010552.1 582646 583728 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5492 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(582646..583728) Burkholderia ambifaria MC40-6 6179897 YP_001810322.1 CDS BamMC406_3639 NC_010552.1 583804 585837 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_5493 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 583804..585837 Burkholderia ambifaria MC40-6 6179898 YP_001810323.1 CDS BamMC406_3640 NC_010552.1 586017 586421 R KEGG: bam:Bamb_5494 hypothetical protein; hypothetical protein complement(586017..586421) Burkholderia ambifaria MC40-6 6179899 YP_001810324.1 CDS BamMC406_3641 NC_010552.1 586574 587467 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5495 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(586574..587467) Burkholderia ambifaria MC40-6 6180038 YP_001810325.1 CDS BamMC406_3642 NC_010552.1 587554 588339 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bam:Bamb_5496 NAD(P)H dehydrogenase (quinone); ribosyldihydronicotinamide dehydrogenase (quinone) 587554..588339 Burkholderia ambifaria MC40-6 6180039 YP_001810326.1 CDS BamMC406_3643 NC_010552.1 588351 588773 R TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: reu:Reut_B5259 protein of unknown function DUF1316; type VI secretion system lysozyme-like protein complement(588351..588773) Burkholderia ambifaria MC40-6 6180040 YP_001810327.1 CDS BamMC406_3644 NC_010552.1 588770 591478 R KEGG: rme:Rmet_0618 ATPase AAA-2; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase complement(588770..591478) Burkholderia ambifaria MC40-6 6181228 YP_001810328.1 CDS BamMC406_3645 NC_010552.1 591574 592059 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: rme:Rmet_0619 protein of unknown function DUF796; Hcp1 family type VI secretion system effector complement(591574..592059) Burkholderia ambifaria MC40-6 6181229 YP_001810329.1 CDS BamMC406_3646 NC_010552.1 592154 593917 R PFAM: OmpA/MotB domain protein; KEGG: reu:Reut_B5262 OmpA/MotB; OmpA/MotB domain-containing protein complement(592154..593917) Burkholderia ambifaria MC40-6 6181230 YP_001810330.1 CDS BamMC406_3647 NC_010552.1 593929 594603 R KEGG: bvi:Bcep1808_5149 hypothetical protein; hypothetical protein complement(593929..594603) Burkholderia ambifaria MC40-6 6180050 YP_001810331.1 CDS BamMC406_3648 NC_010552.1 594684 596033 R TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: reu:Reut_B5264 protein of unknown function DUF876, bacterial; type VI secretion protein complement(594684..596033) Burkholderia ambifaria MC40-6 6180051 YP_001810332.1 CDS BamMC406_3649 NC_010552.1 596614 597126 D TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: ypp:YPDSF_1511 hypothetical protein; type VI secretion protein 596614..597126 Burkholderia ambifaria MC40-6 6180538 YP_001810333.1 CDS BamMC406_3650 NC_010552.1 597200 598750 D TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: rme:Rmet_0624 protein of unknown function DUF877; EvpB family type VI secretion protein 597200..598750 Burkholderia ambifaria MC40-6 6180539 YP_001810334.1 CDS BamMC406_3651 NC_010552.1 598829 601168 D TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein; KEGG: ecv:APECO1_3711 hypothetical protein; Rhs element Vgr protein 598829..601168 Burkholderia ambifaria MC40-6 6180540 YP_001810335.1 CDS BamMC406_3652 NC_010552.1 601178 603805 D KEGG: bvi:Bcep1808_2272 protein of unknown function DUF847; chitinase-like protein 601178..603805 Burkholderia ambifaria MC40-6 6181084 YP_001810336.1 CDS BamMC406_3653 NC_010552.1 603807 604364 D KEGG: ses:SARI_02619 hypothetical protein; hypothetical protein 603807..604364 Burkholderia ambifaria MC40-6 6181085 YP_001810337.1 CDS BamMC406_3654 NC_010552.1 605906 607141 D KEGG: reu:Reut_B5270 hypothetical protein; hypothetical protein 605906..607141 Burkholderia ambifaria MC40-6 6181086 YP_001810338.1 CDS BamMC406_3655 NC_010552.1 607138 610956 D PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bvi:Bcep1808_5139 ImcF domain protein; hypothetical protein 607138..610956 Burkholderia ambifaria MC40-6 6180206 YP_001810339.1 CDS BamMC406_3656 NC_010552.1 610965 612548 D TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: reu:Reut_B5272 ImpA, N-terminal; type VI secretion-associated protein 610965..612548 Burkholderia ambifaria MC40-6 6180207 YP_001810340.1 CDS BamMC406_3657 NC_010552.1 612558 614372 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: rme:Rmet_0635 protein of unknown function DUF879; type VI secretion protein 612558..614372 Burkholderia ambifaria MC40-6 6180208 YP_001810341.1 CDS BamMC406_3658 NC_010552.1 614369 615493 D TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: reu:Reut_B5274 protein of unknown function DUF1305; type VI secretion protein 614369..615493 Burkholderia ambifaria MC40-6 6180390 YP_001810342.1 CDS BamMC406_3659 NC_010552.1 615507 616025 D KEGG: esa:ESA_00145 hypothetical protein; hypothetical protein 615507..616025 Burkholderia ambifaria MC40-6 6180391 YP_001810343.1 CDS BamMC406_3660 NC_010552.1 616090 616380 R KEGG: bam:Bamb_5497 muconolactone delta-isomerase; TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase complement(616090..616380) Burkholderia ambifaria MC40-6 6180392 YP_001810344.1 CDS BamMC406_3661 NC_010552.1 616424 617326 R TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bam:Bamb_5498 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase complement(616424..617326) Burkholderia ambifaria MC40-6 6179655 YP_001810345.1 CDS BamMC406_3662 NC_010552.1 617363 618496 R TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_5499 muconate and chloromuconate cycloisomerases; muconate and chloromuconate cycloisomerase complement(617363..618496) Burkholderia ambifaria MC40-6 6179656 YP_001810346.1 CDS BamMC406_3663 NC_010552.1 618588 619478 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5500 transcriptional regulator, LysR family; LysR family transcriptional regulator 618588..619478 Burkholderia ambifaria MC40-6 6179326 YP_001810347.1 CDS BamMC406_3664 NC_010552.1 619840 621528 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bch:Bcen2424_3772 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 619840..621528 Burkholderia ambifaria MC40-6 6179327 YP_001810348.1 CDS BamMC406_3665 NC_010552.1 621539 621808 D KEGG: bch:Bcen2424_3773 hypothetical protein; hypothetical protein 621539..621808 Burkholderia ambifaria MC40-6 6179328 YP_001810349.1 CDS BamMC406_3666 NC_010552.1 621942 622901 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5501 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(621942..622901) Burkholderia ambifaria MC40-6 6179143 YP_001810350.1 CDS BamMC406_3667 NC_010552.1 623113 624402 D PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: bam:Bamb_5502 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 623113..624402 Burkholderia ambifaria MC40-6 6179144 YP_001810351.1 CDS BamMC406_3668 NC_010552.1 624399 624887 D PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: bam:Bamb_5503 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 624399..624887 Burkholderia ambifaria MC40-6 6179145 YP_001810352.1 CDS BamMC406_3669 NC_010552.1 624904 625230 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_5504 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 624904..625230 Burkholderia ambifaria MC40-6 6181398 YP_001810353.1 CDS BamMC406_3670 NC_010552.1 625220 626440 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_5505 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 625220..626440 Burkholderia ambifaria MC40-6 6181399 YP_001810354.1 CDS BamMC406_3671 NC_010552.1 626628 627914 D PFAM: protein of unknown function DUF445; KEGG: bam:Bamb_5506 protein of unknown function DUF445; hypothetical protein 626628..627914 Burkholderia ambifaria MC40-6 6181400 YP_001810355.1 CDS BamMC406_3672 NC_010552.1 627957 628256 R TIGRFAM: addiction module antidote protein; KEGG: bam:Bamb_5507 putative transcriptional regulator; putative transcriptional regulator complement(627957..628256) Burkholderia ambifaria MC40-6 6181047 YP_001810356.1 CDS BamMC406_3673 NC_010552.1 628260 628577 R TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: bam:Bamb_5508 protein of unknown function DUF891; addiction module killer protein complement(628260..628577) Burkholderia ambifaria MC40-6 6181048 YP_001810357.1 CDS BamMC406_3674 NC_010552.1 628901 630541 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 628901..630541 Burkholderia ambifaria MC40-6 6181049 YP_001810358.1 CDS BamMC406_3675 NC_010552.1 630570 632003 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_5510 aldehyde dehydrogenase; aldehyde dehydrogenase 630570..632003 Burkholderia ambifaria MC40-6 6180203 YP_001810359.1 CDS BamMC406_3676 NC_010552.1 632256 633839 D TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bam:Bamb_5511 Na+/H+ antiporter; Na+/H+ antiporter 632256..633839 Burkholderia ambifaria MC40-6 6180204 YP_001810360.1 CDS BamMC406_3677 NC_010552.1 633914 634006 R hypothetical protein complement(633914..634006) Burkholderia ambifaria MC40-6 6180205 YP_001810361.1 CDS BamMC406_3678 NC_010552.1 634365 635456 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5512 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 634365..635456 Burkholderia ambifaria MC40-6 6179802 YP_001810362.1 CDS BamMC406_3679 NC_010552.1 635580 637256 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_5513 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 635580..637256 Burkholderia ambifaria MC40-6 6179803 YP_001810363.1 CDS BamMC406_3680 NC_010552.1 637253 637765 D PFAM: CheW domain protein; KEGG: bam:Bamb_5514 CheW protein; CheW protein 637253..637765 Burkholderia ambifaria MC40-6 6181070 YP_001810364.1 CDS BamMC406_3681 NC_010552.1 637762 639294 D PFAM: MCP methyltransferase CheR-type; Tetratricopeptide TPR_2 repeat protein; KEGG: bam:Bamb_5515 MCP methyltransferase, CheR-type; TPR repeat-containing CheR-type MCP methyltransferase 637762..639294 Burkholderia ambifaria MC40-6 6181071 YP_001810365.1 CDS BamMC406_3682 NC_010552.1 639340 640056 D PFAM: CheW domain protein; KEGG: bam:Bamb_5516 CheW protein; CheW protein 639340..640056 Burkholderia ambifaria MC40-6 6181072 YP_001810366.1 CDS BamMC406_3683 NC_010552.1 640053 642362 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: bam:Bamb_5517 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 640053..642362 Burkholderia ambifaria MC40-6 6179425 YP_001810367.1 CDS BamMC406_3684 NC_010552.1 642359 643378 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 642359..643378 Burkholderia ambifaria MC40-6 6179426 YP_001810368.1 CDS BamMC406_3685 NC_010552.1 643456 644862 D PFAM: Chloride channel core; KEGG: bam:Bamb_5519 Cl-channel, voltage-gated family protein; chloride channel core protein 643456..644862 Burkholderia ambifaria MC40-6 6179427 YP_001810369.1 CDS BamMC406_3686 NC_010552.1 644950 645663 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(644950..645663) Burkholderia ambifaria MC40-6 6180194 YP_001810370.1 CDS BamMC406_3687 NC_010552.1 645879 647741 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_5523 ABC transporter related; ABC transporter-like protein complement(645879..647741) Burkholderia ambifaria MC40-6 6180195 YP_001810371.1 CDS BamMC406_3688 NC_010552.1 648247 649128 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: bam:Bamb_5524 Dyp-type peroxidase family; Dyp-type peroxidase family protein 648247..649128 Burkholderia ambifaria MC40-6 6180196 YP_001810372.1 CDS BamMC406_3689 NC_010552.1 649263 649664 R PFAM: OsmC family protein; KEGG: bam:Bamb_5525 OsmC family protein; OsmC family protein complement(649263..649664) Burkholderia ambifaria MC40-6 6179776 YP_001810373.1 CDS BamMC406_3690 NC_010552.1 649782 650702 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5526 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(649782..650702) Burkholderia ambifaria MC40-6 6179777 YP_001810374.1 CDS BamMC406_3691 NC_010552.1 651934 653271 D TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bxe:Bxe_B1729 putative sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 651934..653271 Burkholderia ambifaria MC40-6 6179778 YP_001810375.1 CDS BamMC406_3692 NC_010552.1 653493 654539 D PFAM: polysaccharide export protein; KEGG: bam:Bamb_5118 polysaccharide export protein; polysaccharide export protein 653493..654539 Burkholderia ambifaria MC40-6 6181114 YP_001810376.1 CDS BamMC406_3693 NC_010552.1 654536 654985 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bxe:Bxe_B0508 protein tyrosine phosphatase; protein tyrosine phosphatase 654536..654985 Burkholderia ambifaria MC40-6 6181115 YP_001810377.1 CDS BamMC406_3694 NC_010552.1 655097 657277 D KEGG: bxe:Bxe_B0507 exopolysaccharide transport protein/putative tyrosine protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide tyrosine-protein kinase 655097..657277 Burkholderia ambifaria MC40-6 6179234 YP_001810378.1 CDS BamMC406_3695 NC_010552.1 657297 658481 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ecj:JW5600 UDP-N-acetyl glucosamine-2-epimerase; UDP-N-acetylglucosamine 2-epimerase 657297..658481 Burkholderia ambifaria MC40-6 6179235 YP_001810379.1 CDS wecC NC_010552.1 658505 659761 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 658505..659761 Burkholderia ambifaria MC40-6 6179236 YP_001810380.1 CDS BamMC406_3697 NC_010552.1 659766 661097 D PFAM: polysaccharide biosynthesis protein; KEGG: bxe:Bxe_B2253 putative lipopolysaccharide (O-antigen)exporter, PST family, MOP superfamily; polysaccharide biosynthesis protein 659766..661097 Burkholderia ambifaria MC40-6 6180660 YP_001810381.1 CDS BamMC406_3698 NC_010552.1 661108 661926 D PFAM: glycosyl transferase family 25; KEGG: bxe:Bxe_B2251a hypothetical protein; glycosyl transferase family protein 661108..661926 Burkholderia ambifaria MC40-6 6180661 YP_001810382.1 CDS BamMC406_3699 NC_010552.1 661919 663229 D KEGG: bxe:Bxe_B2251 hypothetical protein; hypothetical protein 661919..663229 Burkholderia ambifaria MC40-6 6180662 YP_001810383.1 CDS BamMC406_3700 NC_010552.1 663226 664347 D PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_B0503 putative glycosyltransferase; group 1 glycosyl transferase 663226..664347 Burkholderia ambifaria MC40-6 6180898 YP_001810384.1 CDS BamMC406_3701 NC_010552.1 664349 665155 D KEGG: bxe:Bxe_B2249 hypothetical protein; hypothetical protein 664349..665155 Burkholderia ambifaria MC40-6 6180899 YP_001810385.1 CDS BamMC406_3702 NC_010552.1 665152 666363 D KEGG: bxe:Bxe_B0501 hypothetical protein; hypothetical protein 665152..666363 Burkholderia ambifaria MC40-6 6180900 YP_001810386.1 CDS BamMC406_3703 NC_010552.1 666360 667127 D KEGG: bxe:Bxe_B0500 glycosyl transferase WecB/TagA/CpsF; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 666360..667127 Burkholderia ambifaria MC40-6 6179239 YP_001810387.1 CDS BamMC406_3704 NC_010552.1 667207 668523 D TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bch:Bcen2424_3802 manganese transport protein MntH; manganese transport protein MntH 667207..668523 Burkholderia ambifaria MC40-6 6179240 YP_001810388.1 CDS BamMC406_3705 NC_010552.1 668596 669192 D PFAM: phosphoesterase PA-phosphatase related; KEGG: bam:Bamb_5529 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 668596..669192 Burkholderia ambifaria MC40-6 6179241 YP_001810389.1 CDS BamMC406_3706 NC_010552.1 669643 670431 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_5530 short chain dehydrogenase; short chain dehydrogenase 669643..670431 Burkholderia ambifaria MC40-6 6181240 YP_001810390.1 CDS BamMC406_3707 NC_010552.1 670467 671483 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_5531 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 670467..671483 Burkholderia ambifaria MC40-6 6181241 YP_001810391.1 CDS BamMC406_3708 NC_010552.1 671746 672813 R PFAM: protein of unknown function UPF0118; KEGG: bam:Bamb_5533 protein of unknown function UPF0118; hypothetical protein complement(671746..672813) Burkholderia ambifaria MC40-6 6181242 YP_001810392.1 CDS BamMC406_3709 NC_010552.1 673025 673609 R KEGG: bam:Bamb_5534 hypothetical protein; hypothetical protein complement(673025..673609) Burkholderia ambifaria MC40-6 6179704 YP_001810393.1 CDS BamMC406_3710 NC_010552.1 673680 674069 R PFAM: protein of unknown function DUF883 ElaB; KEGG: bam:Bamb_5535 protein of unknown function DUF883, ElaB; hypothetical protein complement(673680..674069) Burkholderia ambifaria MC40-6 6179705 YP_001810394.1 CDS BamMC406_3711 NC_010552.1 674408 676210 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bam:Bamb_5536 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(674408..676210) Burkholderia ambifaria MC40-6 6179454 YP_001810395.1 CDS BamMC406_3712 NC_010552.1 676419 676772 D PFAM: DGPFAETKE family protein; KEGG: bam:Bamb_5537 DGPFAETKE family protein; DGPFAETKE family protein 676419..676772 Burkholderia ambifaria MC40-6 6179455 YP_001810396.1 CDS BamMC406_3713 NC_010552.1 676898 677320 D PFAM: DGPFAETKE family protein; KEGG: bam:Bamb_5538 DGPFAETKE family protein; DGPFAETKE family protein 676898..677320 Burkholderia ambifaria MC40-6 6179456 YP_001810397.1 CDS BamMC406_3714 NC_010552.1 677347 677763 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_5539 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 677347..677763 Burkholderia ambifaria MC40-6 6179603 YP_001810398.1 CDS BamMC406_3715 NC_010552.1 677760 679028 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bch:Bcen2424_3814 putative RNA polymerase, sigma-24 subunit, ECF subfamily; RNA polymerase ECF-subfamily sigma factor 677760..679028 Burkholderia ambifaria MC40-6 6179604 YP_001810399.1 CDS BamMC406_3716 NC_010552.1 679363 681144 D PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: bmu:Bmul_5132 polypeptide-transport-associated domain protein ShlB-type; polypeptide-transport-associated domain-containing protein 679363..681144 Burkholderia ambifaria MC40-6 6179605 YP_001810400.1 CDS BamMC406_3717 NC_010552.1 681295 684066 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: bmu:Bmul_5133 filamentous haemagglutinin family outer membrane protein; filamentous hemagglutinin outer membrane protein 681295..684066 Burkholderia ambifaria MC40-6 6179669 YP_001810401.1 CDS BamMC406_3718 NC_010552.1 684405 684827 D PFAM: Rubrerythrin; KEGG: bam:Bamb_5541 rubrerythrin; rubrerythrin 684405..684827 Burkholderia ambifaria MC40-6 6179670 YP_001810402.1 CDS BamMC406_3719 NC_010552.1 684954 686291 D KEGG: bam:Bamb_5542 Fe-S oxidoreductase-like protein; Fe-S oxidoreductase-like protein 684954..686291 Burkholderia ambifaria MC40-6 6179671 YP_001810403.1 CDS BamMC406_3720 NC_010552.1 686337 686918 D KEGG: bam:Bamb_5543 hypothetical protein; hypothetical protein 686337..686918 Burkholderia ambifaria MC40-6 6180141 YP_001810404.1 CDS BamMC406_3721 NC_010552.1 687612 688556 D KEGG: bam:Bamb_5544 hypothetical protein; hypothetical protein 687612..688556 Burkholderia ambifaria MC40-6 6180142 YP_001810405.1 CDS BamMC406_3722 NC_010552.1 688678 690204 R KEGG: bam:Bamb_5545 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(688678..690204) Burkholderia ambifaria MC40-6 6180143 YP_001810406.1 CDS BamMC406_3723 NC_010552.1 690644 692017 D TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bam:Bamb_5546 sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 690644..692017 Burkholderia ambifaria MC40-6 6180313 YP_001810407.1 CDS BamMC406_3724 NC_010552.1 692084 693496 D TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: bam:Bamb_5547 UDP-glucose 6-dehydrogenase; nucleotide sugar dehydrogenase 692084..693496 Burkholderia ambifaria MC40-6 6180314 YP_001810408.1 CDS BamMC406_3725 NC_010552.1 693537 693980 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bam:Bamb_5548 protein tyrosine phosphatase; protein tyrosine phosphatase 693537..693980 Burkholderia ambifaria MC40-6 6180456 YP_001810409.1 CDS BamMC406_3726 NC_010552.1 693974 695152 D PFAM: polysaccharide export protein; KEGG: bam:Bamb_5549 polysaccharide export protein; polysaccharide export protein 693974..695152 Burkholderia ambifaria MC40-6 6180457 YP_001810410.1 CDS BamMC406_3727 NC_010552.1 695203 697428 D KEGG: bam:Bamb_5550 hypothetical protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide tyrosine-protein kinase 695203..697428 Burkholderia ambifaria MC40-6 6180458 YP_001810411.1 CDS BamMC406_3728 NC_010552.1 697490 698449 D PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_5551 glycosyl transferase, family 2; glycosyl transferase family protein 697490..698449 Burkholderia ambifaria MC40-6 6180699 YP_001810412.1 CDS BamMC406_3729 NC_010552.1 698560 699696 D KEGG: bam:Bamb_5552 glycosyltransferase-like protein; glycosyltransferase-like protein 698560..699696 Burkholderia ambifaria MC40-6 6180700 YP_001810413.1 CDS BamMC406_3730 NC_010552.1 699707 701173 D KEGG: bam:Bamb_5553 hypothetical protein; hypothetical protein 699707..701173 Burkholderia ambifaria MC40-6 6180701 YP_001810414.1 CDS BamMC406_3731 NC_010552.1 701170 702354 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_5554 glycosyl transferase, group 1; group 1 glycosyl transferase 701170..702354 Burkholderia ambifaria MC40-6 6181254 YP_001810415.1 CDS BamMC406_3732 NC_010552.1 702354 703520 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_5555 glycosyl transferase, group 1; group 1 glycosyl transferase 702354..703520 Burkholderia ambifaria MC40-6 6181255 YP_001810416.1 CDS BamMC406_3733 NC_010552.1 703844 705079 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5556 major facilitator superfamily MFS_1; major facilitator transporter complement(703844..705079) Burkholderia ambifaria MC40-6 6181256 YP_001810417.1 CDS BamMC406_3734 NC_010552.1 705231 705701 D PFAM: helix-turn-helix HxlR type; KEGG: bam:Bamb_5557 transcriptional regulator, HxlR family; HxlR family transcriptional regulator 705231..705701 Burkholderia ambifaria MC40-6 6181470 YP_001810418.1 CDS BamMC406_3735 NC_010552.1 706154 706921 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5558 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(706154..706921) Burkholderia ambifaria MC40-6 6181471 YP_001810419.1 CDS BamMC406_3736 NC_010552.1 706947 707288 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: bam:Bamb_5559 peptidylprolyl isomerase; FKBP-type peptidylprolyl isomerase complement(706947..707288) Burkholderia ambifaria MC40-6 6181472 YP_001810420.1 CDS BamMC406_3737 NC_010552.1 707869 708792 D KEGG: bam:Bamb_5561 metal-dependent hydrolase-like protein; metal-dependent hydrolase-like protein 707869..708792 Burkholderia ambifaria MC40-6 6181491 YP_001810421.1 CDS BamMC406_3738 NC_010552.1 709229 710701 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bam:Bamb_5563 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 709229..710701 Burkholderia ambifaria MC40-6 6181492 YP_001810422.1 CDS BamMC406_3739 NC_010552.1 711696 712478 R TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_5565 cationic amino acid ABC transporter, periplasmic binding protein; cationic amino acid ABC transporter periplasmic binding protein complement(711696..712478) Burkholderia ambifaria MC40-6 6181493 YP_001810423.1 CDS BamMC406_3740 NC_010552.1 712709 713128 D KEGG: bam:Bamb_5566 hypothetical protein; hypothetical protein 712709..713128 Burkholderia ambifaria MC40-6 6181206 YP_001810424.1 CDS BamMC406_3741 NC_010552.1 713131 713826 D PFAM: RES domain protein; KEGG: bam:Bamb_5567 hypothetical protein; RES domain-containing protein 713131..713826 Burkholderia ambifaria MC40-6 6181207 YP_001810425.1 CDS BamMC406_3742 NC_010552.1 713884 714609 R PFAM: metallophosphoesterase; KEGG: bam:Bamb_5568 metallophosphoesterase; metallophosphoesterase complement(713884..714609) Burkholderia ambifaria MC40-6 6180770 YP_001810426.1 CDS BamMC406_3743 NC_010552.1 714744 715397 D PFAM: protein of unknown function DUF1345; KEGG: bam:Bamb_5569 protein of unknown function DUF1345; hypothetical protein 714744..715397 Burkholderia ambifaria MC40-6 6180771 YP_001810427.1 CDS BamMC406_3744 NC_010552.1 715404 716072 R PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_5570 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(715404..716072) Burkholderia ambifaria MC40-6 6180772 YP_001810428.1 CDS BamMC406_3745 NC_010552.1 716195 716905 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_5571 methyltransferase type 11; type 11 methyltransferase complement(716195..716905) Burkholderia ambifaria MC40-6 6180681 YP_001810429.1 CDS BamMC406_3746 NC_010552.1 717207 718850 D PFAM: glycoside hydrolase family 13 domain protein; KEGG: bam:Bamb_5572 glycoside hydrolase, family 13 domain protein; glycoside hydrolase family 13 protein 717207..718850 Burkholderia ambifaria MC40-6 6180682 YP_001810430.1 CDS BamMC406_3747 NC_010552.1 718910 719494 R PFAM: thiamine monophosphate synthase; KEGG: bam:Bamb_5573 thiamine monophosphate synthase; thiamine monophosphate synthase complement(718910..719494) Burkholderia ambifaria MC40-6 6180683 YP_001810431.1 CDS BamMC406_3748 NC_010552.1 719532 720875 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bam:Bamb_3219 protein of unknown function DUF21; hypothetical protein complement(719532..720875) Burkholderia ambifaria MC40-6 6180079 YP_001810432.1 CDS BamMC406_3749 NC_010552.1 720953 721732 R PFAM: histidine kinase A domain protein; KEGG: bam:Bamb_3220 histidine kinase; histidine kinase complement(720953..721732) Burkholderia ambifaria MC40-6 6180080 YP_001810433.1 CDS BamMC406_3750 NC_010552.1 721800 722723 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_3221 protein of unknown function DUF6, transmembrane; hypothetical protein complement(721800..722723) Burkholderia ambifaria MC40-6 6180081 YP_001810434.1 CDS BamMC406_3751 NC_010552.1 722763 723620 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3222 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(722763..723620) Burkholderia ambifaria MC40-6 6179511 YP_001810435.1 CDS BamMC406_3752 NC_010552.1 723731 724114 D PFAM: 4-oxalocrotonate tautomerase; KEGG: bam:Bamb_3223 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 723731..724114 Burkholderia ambifaria MC40-6 6179512 YP_001810436.1 CDS BamMC406_3753 NC_010552.1 724241 725878 D PFAM: CHAD domain containing protein; KEGG: bam:Bamb_3224 CHAD domain containing protein; CHAD domain-containing protein 724241..725878 Burkholderia ambifaria MC40-6 6179513 YP_001810437.1 CDS BamMC406_3754 NC_010552.1 725927 726766 D TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: bam:Bamb_3225 transcriptional regulator, ModE family; ModE family transcriptional regulator 725927..726766 Burkholderia ambifaria MC40-6 6180257 YP_001810438.1 CDS BamMC406_3755 NC_010552.1 726903 727646 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_3226 ABC transporter related; ABC transporter-like protein complement(726903..727646) Burkholderia ambifaria MC40-6 6180258 YP_001810439.1 CDS BamMC406_3756 NC_010552.1 727753 728433 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3227 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit complement(727753..728433) Burkholderia ambifaria MC40-6 6180465 YP_001810440.1 CDS BamMC406_3757 NC_010552.1 728441 729238 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_3228 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(728441..729238) Burkholderia ambifaria MC40-6 6180466 YP_001810441.1 CDS BamMC406_3758 NC_010552.1 729375 730073 R PFAM: phosphoesterase PA-phosphatase related; KEGG: bam:Bamb_3229 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(729375..730073) Burkholderia ambifaria MC40-6 6180467 YP_001810442.1 CDS BamMC406_3759 NC_010552.1 730322 731431 D TIGRFAM: esterase, PHB depolymerase family; KEGG: bam:Bamb_3230 esterase, PHB depolymerase family; PHB depolymerase family esterase 730322..731431 Burkholderia ambifaria MC40-6 6180441 YP_001810443.1 CDS BamMC406_3760 NC_010552.1 731513 731689 D KEGG: bam:Bamb_3231 hypothetical protein; hypothetical protein 731513..731689 Burkholderia ambifaria MC40-6 6180442 YP_001810444.1 CDS BamMC406_3761 NC_010552.1 731813 732232 R PFAM: OsmC family protein; KEGG: bam:Bamb_3232 OsmC family protein; OsmC family protein complement(731813..732232) Burkholderia ambifaria MC40-6 6180443 YP_001810445.1 CDS BamMC406_3762 NC_010552.1 732385 732837 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_3233 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(732385..732837) Burkholderia ambifaria MC40-6 6180865 YP_001810446.1 CDS BamMC406_3763 NC_010552.1 733015 733824 R KEGG: bam:Bamb_3234 hypothetical protein; hypothetical protein complement(733015..733824) Burkholderia ambifaria MC40-6 6180866 YP_001810447.1 CDS BamMC406_3764 NC_010552.1 733815 734813 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(733815..734813) Burkholderia ambifaria MC40-6 6180867 YP_001810448.1 CDS BamMC406_3765 NC_010552.1 734921 735328 R KEGG: bam:Bamb_3236 hypothetical protein; hypothetical protein complement(734921..735328) Burkholderia ambifaria MC40-6 6181503 YP_001810449.1 CDS BamMC406_3766 NC_010552.1 735469 736995 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 735469..736995 Burkholderia ambifaria MC40-6 6181504 YP_001810450.1 CDS BamMC406_3767 NC_010552.1 737106 737384 R KEGG: bam:Bamb_3241 hypothetical protein; hypothetical protein complement(737106..737384) Burkholderia ambifaria MC40-6 6181505 YP_001810451.1 CDS BamMC406_3768 NC_010552.1 737786 738544 R PFAM: conserved hypothetical protein; KEGG: bam:Bamb_3242 conserved hypothetical protein 730; hypothetical protein complement(737786..738544) Burkholderia ambifaria MC40-6 6179963 YP_001810452.1 CDS BamMC406_3769 NC_010552.1 738546 741299 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 738546..741299 Burkholderia ambifaria MC40-6 6179964 YP_001810453.1 CDS BamMC406_3770 NC_010552.1 741578 742912 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_3244 NADH dehydrogenase; NADH dehydrogenase 741578..742912 Burkholderia ambifaria MC40-6 6179965 YP_001810454.1 CDS BamMC406_3771 NC_010552.1 743319 744194 D PFAM: dienelactone hydrolase; KEGG: bam:Bamb_3245 carboxymethylenebutenolidase; carboxymethylenebutenolidase 743319..744194 Burkholderia ambifaria MC40-6 6179557 YP_001810455.1 CDS BamMC406_3772 NC_010552.1 744245 745114 R PFAM: Rhodanese domain protein; KEGG: bam:Bamb_3246 3-mercaptopyruvate sulfurtransferase; rhodanese domain-containing protein complement(744245..745114) Burkholderia ambifaria MC40-6 6179558 YP_001810456.1 CDS BamMC406_3773 NC_010552.1 745232 746338 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_3247 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(745232..746338) Burkholderia ambifaria MC40-6 6181119 YP_001810457.1 CDS BamMC406_3774 NC_010552.1 746609 746902 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 746609..746902 Burkholderia ambifaria MC40-6 6181120 YP_001810458.1 CDS BamMC406_3775 NC_010552.1 746899 747783 D PFAM: Polyprenyl synthetase; KEGG: bam:Bamb_3249 polyprenyl synthetase; polyprenyl synthetase 746899..747783 Burkholderia ambifaria MC40-6 6181121 YP_001810459.1 CDS BamMC406_3776 NC_010552.1 747865 749769 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 747865..749769 Burkholderia ambifaria MC40-6 6181249 YP_001810460.1 CDS BamMC406_3777 NC_010552.1 749924 750733 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 749924..750733 Burkholderia ambifaria MC40-6 6181250 YP_001810461.1 CDS BamMC406_3778 NC_010552.1 750834 751874 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(750834..751874) Burkholderia ambifaria MC40-6 6181251 YP_001810462.1 CDS BamMC406_3779 NC_010552.1 752007 753224 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_3253 HI0933 family protein; hypothetical protein 752007..753224 Burkholderia ambifaria MC40-6 6180126 YP_001810463.1 CDS rpsU NC_010552.1 753331 753543 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 753331..753543 Burkholderia ambifaria MC40-6 6180127 YP_001810464.1 CDS BamMC406_3781 NC_010552.1 753729 754175 D KEGG: bam:Bamb_3255 GatB/YqeY domain protein; GatB/YqeY domain-containing protein 753729..754175 Burkholderia ambifaria MC40-6 6180128 YP_001810465.1 CDS dnaG NC_010552.1 754248 756116 D synthesizes RNA primers at the replication forks; DNA primase 754248..756116 Burkholderia ambifaria MC40-6 6179376 YP_001810466.1 CDS BamMC406_3783 NC_010552.1 756205 758622 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 756205..758622 Burkholderia ambifaria MC40-6 6179377 YP_001810467.1 CDS BamMC406_3784 NC_010552.1 759721 766314 D KEGG: xcc:XCC2095 DNA helicase related protein; DNA helicase related protein 759721..766314 Burkholderia ambifaria MC40-6 6179382 YP_001810468.1 CDS BamMC406_3785 NC_010552.1 766619 768331 D KEGG: bxe:Bxe_A4308 hypothetical protein; hypothetical protein 766619..768331 Burkholderia ambifaria MC40-6 6181326 YP_001810469.1 CDS BamMC406_3786 NC_010552.1 768358 769146 R PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_3258 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(768358..769146) Burkholderia ambifaria MC40-6 6181327 YP_001810470.1 CDS BamMC406_3787 NC_010552.1 769210 769719 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3260 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(769210..769719) Burkholderia ambifaria MC40-6 6181328 YP_001810471.1 CDS BamMC406_3788 NC_010552.1 770495 771244 R PFAM: Creatininase; KEGG: bam:Bamb_3261 creatininase; creatininase complement(770495..771244) Burkholderia ambifaria MC40-6 6180393 YP_001810472.1 CDS BamMC406_3789 NC_010552.1 771257 772543 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3262 major facilitator superfamily MFS_1; major facilitator transporter complement(771257..772543) Burkholderia ambifaria MC40-6 6180394 YP_001810473.1 CDS BamMC406_3790 NC_010552.1 772713 773636 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3263 transcriptional regulator, LysR family; LysR family transcriptional regulator 772713..773636 Burkholderia ambifaria MC40-6 6179276 YP_001810474.1 CDS BamMC406_3791 NC_010552.1 773970 775520 D PFAM: phospholipase D/Transphosphatidylase; KEGG: bvi:Bcep1808_4378 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 773970..775520 Burkholderia ambifaria MC40-6 6179277 YP_001810475.1 CDS BamMC406_3792 NC_010552.1 775668 777503 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Peptidase S53 propeptide; KEGG: bch:Bcen2424_3891 pseudomonalisin; pseudomonalisin complement(775668..777503) Burkholderia ambifaria MC40-6 6179278 YP_001810476.1 CDS BamMC406_3793 NC_010552.1 778209 779696 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_3274 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(778209..779696) Burkholderia ambifaria MC40-6 6180651 YP_001810477.1 CDS BamMC406_3794 NC_010552.1 779710 781296 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3275 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(779710..781296) Burkholderia ambifaria MC40-6 6180652 YP_001810478.1 CDS BamMC406_3795 NC_010552.1 781289 782410 R PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_3276 secretion protein HlyD family protein; secretion protein HlyD family protein complement(781289..782410) Burkholderia ambifaria MC40-6 6180653 YP_001810479.1 CDS BamMC406_3796 NC_010552.1 782503 783330 D PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: bam:Bamb_3277 transcriptional regulator, TetR family; TetR family transcriptional regulator 782503..783330 Burkholderia ambifaria MC40-6 6180421 YP_001810480.1 CDS BamMC406_3797 NC_010552.1 783344 785959 R PFAM: MscS Mechanosensitive ion channel; KEGG: bam:Bamb_3278 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(783344..785959) Burkholderia ambifaria MC40-6 6180422 YP_001810481.1 CDS BamMC406_3798 NC_010552.1 785976 786935 R PFAM: Luciferase-like monooxygenase; KEGG: bam:Bamb_3279 luciferase family protein; luciferase-like monooxygenase complement(785976..786935) Burkholderia ambifaria MC40-6 6180423 YP_001810482.1 CDS BamMC406_3799 NC_010552.1 788027 788923 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 788027..788923 Burkholderia ambifaria MC40-6 6180412 YP_001810483.1 CDS BamMC406_3800 NC_010552.1 788920 789561 D PFAM: protein of unknown function DUF938; Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_3284 protein of unknown function DUF938; hypothetical protein 788920..789561 Burkholderia ambifaria MC40-6 6180413 YP_001810484.1 CDS BamMC406_3801 NC_010552.1 789659 791071 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 789659..791071 Burkholderia ambifaria MC40-6 6180414 YP_001810485.1 CDS BamMC406_3802 NC_010552.1 791269 791613 D KEGG: bam:Bamb_3286 hypothetical protein; hypothetical protein 791269..791613 Burkholderia ambifaria MC40-6 6180705 YP_001810486.1 CDS BamMC406_3803 NC_010552.1 791725 792045 R KEGG: bam:Bamb_3287 hypothetical protein; hypothetical protein complement(791725..792045) Burkholderia ambifaria MC40-6 6180706 YP_001810487.1 CDS BamMC406_3804 NC_010552.1 792460 793191 D PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: bam:Bamb_3288 peptidase M23B; peptidase M23 792460..793191 Burkholderia ambifaria MC40-6 6180707 YP_001810488.1 CDS BamMC406_3805 NC_010552.1 793240 793878 R KEGG: bam:Bamb_3289 hypothetical protein; hypothetical protein complement(793240..793878) Burkholderia ambifaria MC40-6 6181315 YP_001810489.1 CDS BamMC406_3806 NC_010552.1 794112 794648 D PFAM: cytochrome B561; KEGG: bam:Bamb_3290 cytochrome b561; cytochrome B561 794112..794648 Burkholderia ambifaria MC40-6 6181316 YP_001810490.1 CDS BamMC406_3807 NC_010552.1 794804 795172 D KEGG: bam:Bamb_3291 hypothetical protein; hypothetical protein 794804..795172 Burkholderia ambifaria MC40-6 6181518 YP_001810491.1 CDS BamMC406_3808 NC_010552.1 795322 797385 D TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_3292 TonB-dependent copper receptor; TonB-dependent copper receptor 795322..797385 Burkholderia ambifaria MC40-6 6181519 YP_001810492.1 CDS BamMC406_3809 NC_010552.1 797615 798709 D PFAM: alpha/beta hydrolase fold; Protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: bam:Bamb_3293 triacylglycerol lipase; triacylglycerol lipase 797615..798709 Burkholderia ambifaria MC40-6 6181520 YP_001810493.1 CDS BamMC406_3810 NC_010552.1 798713 799747 D acts as a molecular chaperone to fold and export lipase A; lipase chaperone 798713..799747 Burkholderia ambifaria MC40-6 6179614 YP_001810494.1 CDS BamMC406_3811 NC_010552.1 799793 801316 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_3295 transcriptional regulator, GntR family; transcriptional regulator complement(799793..801316) Burkholderia ambifaria MC40-6 6179615 YP_001810495.1 CDS BamMC406_3812 NC_010552.1 801425 802519 D KEGG: bam:Bamb_3296 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase subunit 801425..802519 Burkholderia ambifaria MC40-6 6179616 YP_001810496.1 CDS BamMC406_3813 NC_010552.1 802597 803643 D PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_3297 extracellular solute-binding protein, family 1; extracellular solute-binding protein 802597..803643 Burkholderia ambifaria MC40-6 6180398 YP_001810497.1 CDS BamMC406_3814 NC_010552.1 803746 805008 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3298 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 803746..805008 Burkholderia ambifaria MC40-6 6180399 YP_001810498.1 CDS BamMC406_3815 NC_010552.1 805037 805882 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bch:Bcen2424_3921 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 805037..805882 Burkholderia ambifaria MC40-6 6180400 YP_001810499.1 CDS BamMC406_3816 NC_010552.1 806030 807505 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3300 major facilitator superfamily MFS_1; major facilitator transporter 806030..807505 Burkholderia ambifaria MC40-6 6180129 YP_001810500.1 CDS BamMC406_3817 NC_010552.1 807578 809317 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Peptidase S53 propeptide; KEGG: bam:Bamb_3301 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S53 propeptide complement(807578..809317) Burkholderia ambifaria MC40-6 6180130 YP_001810501.1 CDS BamMC406_3818 NC_010552.1 810006 810329 D PFAM: regulatory protein ArsR; KEGG: bam:Bamb_3302 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 810006..810329 Burkholderia ambifaria MC40-6 6180131 YP_001810502.1 CDS BamMC406_3819 NC_010552.1 810326 810757 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bam:Bamb_3303 activator of HSP90 ATPase 1 family protein; activator of Hsp90 ATPase 1 family protein 810326..810757 Burkholderia ambifaria MC40-6 6181192 YP_001810503.1 CDS BamMC406_3820 NC_010552.1 810754 811194 D PFAM: Domain of unknown function DUF1801; KEGG: bam:Bamb_3304 hypothetical protein; hypothetical protein 810754..811194 Burkholderia ambifaria MC40-6 6181193 YP_001810504.1 CDS acnA NC_010552.1 811338 814055 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(811338..814055) Burkholderia ambifaria MC40-6 6181194 YP_001810505.1 CDS prpD NC_010552.1 814108 815559 R functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase complement(814108..815559) Burkholderia ambifaria MC40-6 6181022 YP_001810506.1 CDS BamMC406_3823 NC_010552.1 815582 816091 R KEGG: bam:Bamb_3307 hypothetical protein; hypothetical protein complement(815582..816091) Burkholderia ambifaria MC40-6 6181023 YP_001810507.1 CDS BamMC406_3824 NC_010552.1 816315 817319 R PFAM: HpcH/HpaI aldolase; KEGG: bam:Bamb_3308 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(816315..817319) Burkholderia ambifaria MC40-6 6179649 YP_001810508.1 CDS BamMC406_3825 NC_010552.1 817506 818492 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(817506..818492) Burkholderia ambifaria MC40-6 6179650 YP_001810509.1 CDS BamMC406_3826 NC_010552.1 818790 819605 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bam:Bamb_3310 transcriptional regulator, GntR family; GntR family transcriptional regulator 818790..819605 Burkholderia ambifaria MC40-6 6179651 YP_001810510.1 CDS BamMC406_3827 NC_010552.1 819775 820191 D TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: bam:Bamb_3311 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit 819775..820191 Burkholderia ambifaria MC40-6 6179422 YP_001810511.1 CDS BamMC406_3828 NC_010552.1 820196 820564 D TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: bam:Bamb_3312 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, hydrophobic membrane anchor protein 820196..820564 Burkholderia ambifaria MC40-6 6179423 YP_001810512.1 CDS sdhA NC_010552.1 820568 822343 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 820568..822343 Burkholderia ambifaria MC40-6 6179424 YP_001810513.1 CDS sdhB NC_010552.1 822365 823066 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 822365..823066 Burkholderia ambifaria MC40-6 6180826 YP_001810514.1 CDS BamMC406_3831 NC_010552.1 823151 823423 D PFAM: protein of unknown function DUF339; KEGG: bam:Bamb_3315 protein of unknown function DUF339; hypothetical protein 823151..823423 Burkholderia ambifaria MC40-6 6180827 YP_001810515.1 CDS gltA NC_010552.1 823490 824791 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 823490..824791 Burkholderia ambifaria MC40-6 6180828 YP_001810516.1 CDS BamMC406_3833 NC_010552.1 824882 825865 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_3317 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(824882..825865) Burkholderia ambifaria MC40-6 6179288 YP_001810517.1 CDS BamMC406_3834 NC_010552.1 825958 827010 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_4247 transposase, IS605 OrfB family; IS605 family transposase OrfB 825958..827010 Burkholderia ambifaria MC40-6 6179289 YP_001810518.1 CDS BamMC406_3835 NC_010552.1 827099 827488 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_3318 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 827099..827488 Burkholderia ambifaria MC40-6 6179290 YP_001810519.1 CDS BamMC406_3836 NC_010552.1 827600 828853 D PFAM: protein of unknown function DUF1479; KEGG: bam:Bamb_3319 protein of unknown function DUF1479; hypothetical protein 827600..828853 Burkholderia ambifaria MC40-6 6180444 YP_001810520.1 CDS BamMC406_3837 NC_010552.1 829081 829839 D PFAM: amidinotransferase; KEGG: bam:Bamb_3320 dimethylargininase; dimethylargininase 829081..829839 Burkholderia ambifaria MC40-6 6180445 YP_001810521.1 CDS BamMC406_3838 NC_010552.1 829941 830405 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bch:Bcen2424_3944 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 829941..830405 Burkholderia ambifaria MC40-6 6180446 YP_001810522.1 CDS BamMC406_3839 NC_010552.1 830555 832096 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_3322 amino acid permease-associated region; amino acid permease-associated protein 830555..832096 Burkholderia ambifaria MC40-6 6181349 YP_001810523.1 CDS BamMC406_3840 NC_010552.1 832297 833022 R PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_3323 glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein complement(832297..833022) Burkholderia ambifaria MC40-6 6181350 YP_001810524.1 CDS BamMC406_3841 NC_010552.1 833149 833481 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_3324 cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein complement(833149..833481) Burkholderia ambifaria MC40-6 6179746 YP_001810525.1 CDS BamMC406_3842 NC_010552.1 833898 834719 D KEGG: bur:Bcep18194_B2135 hypothetical protein; hypothetical protein 833898..834719 Burkholderia ambifaria MC40-6 6179747 YP_001810526.1 CDS BamMC406_3843 NC_010552.1 834740 835510 D KEGG: bur:Bcep18194_B2134 hypothetical protein; hypothetical protein 834740..835510 Burkholderia ambifaria MC40-6 6179748 YP_001810527.1 CDS BamMC406_3844 NC_010552.1 835745 837154 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 835745..837154 Burkholderia ambifaria MC40-6 6179389 YP_001810528.1 CDS BamMC406_3845 NC_010552.1 837158 837304 D PFAM: Entericidin EcnAB; KEGG: bam:Bamb_3341 entericidin EcnAB; entericidin EcnAB 837158..837304 Burkholderia ambifaria MC40-6 6179390 YP_001810529.1 CDS leuD NC_010552.1 837370 838020 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 837370..838020 Burkholderia ambifaria MC40-6 6179391 YP_001810530.1 CDS BamMC406_3847 NC_010552.1 838096 839163 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 838096..839163 Burkholderia ambifaria MC40-6 6180342 YP_001810531.1 CDS BamMC406_3848 NC_010552.1 839283 839402 D hypothetical protein 839283..839402 Burkholderia ambifaria MC40-6 6180343 YP_001810532.1 CDS BamMC406_3849 NC_010552.1 839485 840606 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 839485..840606 Burkholderia ambifaria MC40-6 6180344 YP_001810533.1 CDS BamMC406_3850 NC_010552.1 840873 842930 D KEGG: bam:Bamb_3345 hypothetical protein; hypothetical protein 840873..842930 Burkholderia ambifaria MC40-6 6181458 YP_001810534.1 CDS truA NC_010552.1 842930 843742 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 842930..843742 Burkholderia ambifaria MC40-6 6181459 YP_001810535.1 CDS BamMC406_3852 NC_010552.1 843739 844440 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 843739..844440 Burkholderia ambifaria MC40-6 6181460 YP_001810536.1 CDS BamMC406_3853 NC_010552.1 844496 845689 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 844496..845689 Burkholderia ambifaria MC40-6 6180288 YP_001810537.1 CDS BamMC406_3854 NC_010552.1 845698 846549 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bam:Bamb_3349 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 845698..846549 Burkholderia ambifaria MC40-6 6180289 YP_001810538.1 CDS trpA NC_010552.1 846638 847453 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 846638..847453 Burkholderia ambifaria MC40-6 6180290 YP_001810539.1 CDS BamMC406_3856 NC_010552.1 847520 848392 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 847520..848392 Burkholderia ambifaria MC40-6 6181201 YP_001810540.1 CDS BamMC406_3857 NC_010552.1 848493 849803 D TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: bam:Bamb_3352 FolC bifunctional protein; FolC bifunctional protein 848493..849803 Burkholderia ambifaria MC40-6 6181202 YP_001810541.1 CDS BamMC406_3858 NC_010552.1 849833 850681 D PFAM: Sporulation domain protein; KEGG: bam:Bamb_3353 sporulation domain protein; sporulation domain-containing protein 849833..850681 Burkholderia ambifaria MC40-6 6179952 YP_001810542.1 CDS BamMC406_3859 NC_010552.1 850688 851182 D PFAM: Colicin V production protein; KEGG: bam:Bamb_3354 colicin V production protein; colicin V production protein 850688..851182 Burkholderia ambifaria MC40-6 6179953 YP_001810543.1 CDS BamMC406_3860 NC_010552.1 851234 852766 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 851234..852766 Burkholderia ambifaria MC40-6 6179954 YP_001810544.1 CDS BamMC406_3861 NC_010552.1 852985 854217 D catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 852985..854217 Burkholderia ambifaria MC40-6 6180427 YP_001810545.1 CDS BamMC406_3862 NC_010552.1 854312 855280 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bam:Bamb_3357 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(854312..855280) Burkholderia ambifaria MC40-6 6180428 YP_001810546.1 CDS BamMC406_3863 NC_010552.1 855267 856313 R TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: bam:Bamb_3358 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase complement(855267..856313) Burkholderia ambifaria MC40-6 6180429 YP_001810547.1 CDS BamMC406_3864 NC_010552.1 856349 857413 R PFAM: acyltransferase 3; KEGG: bam:Bamb_3359 acyltransferase 3; acyltransferase 3 complement(856349..857413) Burkholderia ambifaria MC40-6 6179785 YP_001810548.1 CDS BamMC406_3865 NC_010552.1 857906 860098 D KEGG: bam:Bamb_3361 hypothetical protein; hypothetical protein 857906..860098 Burkholderia ambifaria MC40-6 6179786 YP_001810549.1 CDS BamMC406_3866 NC_010552.1 860140 861606 D PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: bam:Bamb_3362 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 860140..861606 Burkholderia ambifaria MC40-6 6179787 YP_001810550.1 CDS BamMC406_3867 NC_010552.1 861603 864062 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_3364 glycosyl transferase, group 1; group 1 glycosyl transferase 861603..864062 Burkholderia ambifaria MC40-6 6179160 YP_001810551.1 CDS BamMC406_3868 NC_010552.1 864485 865660 R PFAM: acyltransferase 3; KEGG: bam:Bamb_3365 acyltransferase 3; acyltransferase 3 complement(864485..865660) Burkholderia ambifaria MC40-6 6179161 YP_001810552.1 CDS BamMC406_3869 NC_010552.1 865874 866017 D KEGG: bam:Bamb_3366 hypothetical protein; hypothetical protein 865874..866017 Burkholderia ambifaria MC40-6 6179162 YP_001810553.1 CDS BamMC406_3870 NC_010552.1 866247 867134 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bam:Bamb_3367 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 866247..867134 Burkholderia ambifaria MC40-6 6180242 YP_001810554.1 CDS BamMC406_3871 NC_010552.1 867639 868757 R PFAM: acyltransferase 3; KEGG: bam:Bamb_3369 acyltransferase 3; acyltransferase 3 complement(867639..868757) Burkholderia ambifaria MC40-6 6180243 YP_001810555.1 CDS BamMC406_3872 NC_010552.1 869016 869465 D PFAM: histone family protein DNA-binding protein; KEGG: bcn:Bcen_4388 histone-like DNA-binding protein; histone family protein DNA-binding protein 869016..869465 Burkholderia ambifaria MC40-6 6180244 YP_001810556.1 CDS BamMC406_3873 NC_010552.1 869600 869830 D hypothetical protein 869600..869830 Burkholderia ambifaria MC40-6 6179833 YP_001810557.1 CDS BamMC406_3874 NC_010552.1 869845 870300 D KEGG: bur:Bcep18194_B2105 streptomycin 3''-adenylyltransferase; streptomycin 3''-adenylyltransferase 869845..870300 Burkholderia ambifaria MC40-6 6179834 YP_001810558.1 CDS BamMC406_3875 NC_010552.1 870763 871236 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bam:Bamb_3373 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(870763..871236) Burkholderia ambifaria MC40-6 6180535 YP_001810559.1 CDS BamMC406_3876 NC_010552.1 871626 872783 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_3374 porin, gram-negative type; porin complement(871626..872783) Burkholderia ambifaria MC40-6 6180536 YP_001810560.1 CDS BamMC406_3877 NC_010552.1 873226 874158 R PFAM: ribonuclease BN; KEGG: bam:Bamb_3375 putative ribonuclease BN; ribonuclease BN complement(873226..874158) Burkholderia ambifaria MC40-6 6180537 YP_001810561.1 CDS BamMC406_3878 NC_010552.1 874298 874888 D PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: bam:Bamb_3376 formate dehydrogenase; molybdopterin oxidoreductase Fe4S4 region 874298..874888 Burkholderia ambifaria MC40-6 6181019 YP_001810562.1 CDS BamMC406_3879 NC_010552.1 874937 877369 D KEGG: bam:Bamb_3377 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 874937..877369 Burkholderia ambifaria MC40-6 6181020 YP_001810563.1 CDS BamMC406_3880 NC_010552.1 877380 878294 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: bam:Bamb_3378 formate dehydrogenase, beta subunit; formate dehydrogenase subunit beta 877380..878294 Burkholderia ambifaria MC40-6 6181021 YP_001810564.1 CDS BamMC406_3881 NC_010552.1 878291 878917 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: bam:Bamb_3379 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 878291..878917 Burkholderia ambifaria MC40-6 6179431 YP_001810565.1 CDS BamMC406_3882 NC_010552.1 879025 879960 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: bam:Bamb_3380 formate dehydrogenase accessory protein FdhE; formate dehydrogenase accessory protein FdhE 879025..879960 Burkholderia ambifaria MC40-6 6179432 YP_001810566.1 CDS BamMC406_3883 NC_010552.1 880029 881468 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 880029..881468 Burkholderia ambifaria MC40-6 6179433 YP_001810567.1 CDS BamMC406_3884 NC_010552.1 881465 883390 D TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: bam:Bamb_3382 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 881465..883390 Burkholderia ambifaria MC40-6 6179620 YP_001810568.1 CDS BamMC406_3885 NC_010552.1 883677 884549 R PFAM: band 7 protein; KEGG: bch:Bcen2424_5594 band 7 protein; hypothetical protein complement(883677..884549) Burkholderia ambifaria MC40-6 6179545 YP_001810569.1 CDS BamMC406_3886 NC_010552.1 884940 885143 R hypothetical protein complement(884940..885143) Burkholderia ambifaria MC40-6 6179622 YP_001810570.1 CDS BamMC406_3887 NC_010552.1 885487 885936 D KEGG: bch:Bcen2424_5593 hypothetical protein; hypothetical protein 885487..885936 Burkholderia ambifaria MC40-6 6180088 YP_001810571.1 CDS BamMC406_3888 NC_010552.1 885998 894625 D PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: bcn:Bcen_5267 glycosyltransferase 36; glycosyltransferase 36 885998..894625 Burkholderia ambifaria MC40-6 6180089 YP_001810572.1 CDS BamMC406_3889 NC_010552.1 894807 895025 D PFAM: 17 kDa surface antigen; KEGG: bch:Bcen2424_5591 17 kDa surface antigen; 17 kDa surface antigen 894807..895025 Burkholderia ambifaria MC40-6 6180090 YP_001810573.1 CDS BamMC406_3890 NC_010552.1 895129 896310 D PFAM: fatty acid desaturase; KEGG: bch:Bcen2424_5583 fatty acid desaturase; fatty acid desaturase 895129..896310 Burkholderia ambifaria MC40-6 6179791 YP_001810574.1 CDS BamMC406_3891 NC_010552.1 896375 896554 R hypothetical protein complement(896375..896554) Burkholderia ambifaria MC40-6 6179792 YP_001810575.1 CDS BamMC406_3892 NC_010552.1 896613 896885 R KEGG: bch:Bcen2424_5581 hypothetical protein; hypothetical protein complement(896613..896885) Burkholderia ambifaria MC40-6 6180432 YP_001810576.1 CDS BamMC406_3893 NC_010552.1 897150 897347 D KEGG: bch:Bcen2424_5580 hypothetical protein; hypothetical protein 897150..897347 Burkholderia ambifaria MC40-6 6180433 YP_001810577.1 CDS BamMC406_3894 NC_010552.1 897422 897757 D KEGG: bch:Bcen2424_5579 hypothetical protein; hypothetical protein 897422..897757 Burkholderia ambifaria MC40-6 6180434 YP_001810578.1 CDS BamMC406_3895 NC_010552.1 897870 898046 R PFAM: CsbD family protein; KEGG: bch:Bcen2424_5578 CsbD family protein; CsbD family protein complement(897870..898046) Burkholderia ambifaria MC40-6 6180294 YP_001810579.1 CDS BamMC406_3896 NC_010552.1 898259 898438 R hypothetical protein complement(898259..898438) Burkholderia ambifaria MC40-6 6180295 YP_001810580.1 CDS BamMC406_3897 NC_010552.1 898830 900119 R PFAM: sodium/hydrogen exchanger; KEGG: bch:Bcen2424_5575 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(898830..900119) Burkholderia ambifaria MC40-6 6180296 YP_001810581.1 CDS BamMC406_3898 NC_010552.1 900611 901330 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bch:Bcen2424_5568 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(900611..901330) Burkholderia ambifaria MC40-6 6180209 YP_001810582.1 CDS BamMC406_3899 NC_010552.1 901792 902610 R KEGG: bch:Bcen2424_5572 hypothetical protein; hypothetical protein complement(901792..902610) Burkholderia ambifaria MC40-6 6180210 YP_001810583.1 CDS BamMC406_3900 NC_010552.1 903063 903335 R hypothetical protein complement(903063..903335) Burkholderia ambifaria MC40-6 6180211 YP_001810584.1 CDS BamMC406_3901 NC_010552.1 903876 906320 D KEGG: pfo:Pfl_4551 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 903876..906320 Burkholderia ambifaria MC40-6 6180360 YP_001810585.1 CDS BamMC406_3902 NC_010552.1 906548 907099 R PFAM: protein of unknown function DUF1003; KEGG: har:HEAR0064 hypothetical protein; hypothetical protein complement(906548..907099) Burkholderia ambifaria MC40-6 6180361 YP_001810586.1 CDS BamMC406_3903 NC_010552.1 907275 907670 R KEGG: bch:Bcen2424_5571 hypothetical protein; hypothetical protein complement(907275..907670) Burkholderia ambifaria MC40-6 6180362 YP_001810587.1 CDS BamMC406_3904 NC_010552.1 907750 908151 D hypothetical protein 907750..908151 Burkholderia ambifaria MC40-6 6180604 YP_001810588.1 CDS BamMC406_3905 NC_010552.1 908375 909223 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mfa:Mfla_0589 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(908375..909223) Burkholderia ambifaria MC40-6 6180605 YP_001810589.1 CDS BamMC406_3906 NC_010552.1 909267 910028 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmy:Pmen_1651 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(909267..910028) Burkholderia ambifaria MC40-6 6180606 YP_001810590.1 CDS BamMC406_3907 NC_010552.1 910082 910822 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psb:Psyr_0194 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(910082..910822) Burkholderia ambifaria MC40-6 6180999 YP_001810591.1 CDS BamMC406_3908 NC_010552.1 911102 911995 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: mfa:Mfla_0587 transcriptional regulator, AraC family; AraC family transcriptional regulator 911102..911995 Burkholderia ambifaria MC40-6 6181000 YP_001810592.1 CDS BamMC406_3910 NC_010552.1 913189 913350 R KEGG: bam:Bamb_3403 putative lipoprotein; putative lipoprotein complement(913189..913350) Burkholderia ambifaria MC40-6 6180607 YP_001810593.1 CDS BamMC406_3911 NC_010552.1 913416 914573 R KEGG: bam:Bamb_3404 hypothetical protein; hypothetical protein complement(913416..914573) Burkholderia ambifaria MC40-6 6181418 YP_001810594.1 CDS BamMC406_3912 NC_010552.1 914944 915156 D KEGG: bam:Bamb_3405 hypothetical protein; hypothetical protein 914944..915156 Burkholderia ambifaria MC40-6 6181419 YP_001810595.1 CDS BamMC406_3913 NC_010552.1 915208 915510 R KEGG: bam:Bamb_3406 hypothetical protein; hypothetical protein complement(915208..915510) Burkholderia ambifaria MC40-6 6180829 YP_001810596.1 CDS BamMC406_3914 NC_010552.1 915597 916019 R PFAM: NUDIX hydrolase; KEGG: bam:Bamb_3407 NUDIX hydrolase; NUDIX hydrolase complement(915597..916019) Burkholderia ambifaria MC40-6 6180830 YP_001810597.1 CDS BamMC406_3915 NC_010552.1 916117 917505 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bam:Bamb_3408 uracil-xanthine permease; xanthine permease complement(916117..917505) Burkholderia ambifaria MC40-6 6180831 YP_001810598.1 CDS BamMC406_3916 NC_010552.1 917701 918672 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3409 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(917701..918672) Burkholderia ambifaria MC40-6 6179799 YP_001810599.1 CDS BamMC406_3917 NC_010552.1 918805 919521 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_3410 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 918805..919521 Burkholderia ambifaria MC40-6 6179800 YP_001810600.1 CDS BamMC406_3918 NC_010552.1 919711 920046 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bam:Bamb_3411 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 919711..920046 Burkholderia ambifaria MC40-6 6179801 YP_001810601.1 CDS BamMC406_3919 NC_010552.1 920043 921200 D PFAM: iron-containing alcohol dehydrogenase; KEGG: bam:Bamb_3412 alcohol dehydrogenase; alcohol dehydrogenase 920043..921200 Burkholderia ambifaria MC40-6 6180185 YP_001810602.1 CDS BamMC406_3920 NC_010552.1 921373 921957 D PFAM: protein of unknown function DUF1089; KEGG: bam:Bamb_3413 protein of unknown function DUF1089; hypothetical protein 921373..921957 Burkholderia ambifaria MC40-6 6180186 YP_001810603.1 CDS BamMC406_3921 NC_010552.1 921978 922970 R TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3414 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; aliphatic sulfonate ABC transporter periplasmic ligand-binding protein complement(921978..922970) Burkholderia ambifaria MC40-6 6180187 YP_001810604.1 CDS BamMC406_3922 NC_010552.1 923188 923595 R PFAM: protein of unknown function DUF427; KEGG: bam:Bamb_3415 protein of unknown function DUF427; hypothetical protein complement(923188..923595) Burkholderia ambifaria MC40-6 6180553 YP_001810605.1 CDS BamMC406_3923 NC_010552.1 924035 925621 D PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_3416 extracellular solute-binding protein, family 5; extracellular solute-binding protein 924035..925621 Burkholderia ambifaria MC40-6 6180554 YP_001810606.1 CDS BamMC406_3924 NC_010552.1 925761 926714 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bam:Bamb_3417 taurine dioxygenase; taurine dioxygenase complement(925761..926714) Burkholderia ambifaria MC40-6 6180555 YP_001810607.1 CDS BamMC406_3925 NC_010552.1 927437 927616 D PFAM: Flp/Fap pilin component; KEGG: bvi:Bcep1808_4607 Flp/Fap pilin component; Flp/Fap pilin component 927437..927616 Burkholderia ambifaria MC40-6 6180533 YP_001810608.1 CDS BamMC406_3926 NC_010552.1 927704 928183 D PFAM: peptidase A24A prepilin type IV; KEGG: bam:Bamb_3419 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 927704..928183 Burkholderia ambifaria MC40-6 6180534 YP_001810609.1 CDS BamMC406_3927 NC_010552.1 928204 929232 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bam:Bamb_3420 Flp pilus assembly CpaB; Flp pilus assembly protein CpaB 928204..929232 Burkholderia ambifaria MC40-6 6181128 YP_001810610.1 CDS BamMC406_3928 NC_010552.1 929287 930669 D PFAM: type II and III secretion system protein; KEGG: bam:Bamb_3421 type II and III secretion system protein; type II and III secretion system protein 929287..930669 Burkholderia ambifaria MC40-6 6181129 YP_001810611.1 CDS BamMC406_3929 NC_010552.1 930684 931067 D KEGG: bam:Bamb_3422 hypothetical protein; hypothetical protein 930684..931067 Burkholderia ambifaria MC40-6 6181130 YP_001810612.1 CDS BamMC406_3930 NC_010552.1 931089 932312 D KEGG: bam:Bamb_3423 response regulator receiver protein; response regulator receiver protein 931089..932312 Burkholderia ambifaria MC40-6 6181111 YP_001810613.1 CDS BamMC406_3931 NC_010552.1 932309 933727 D PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: bam:Bamb_3424 type II secretion system protein E; type II secretion system protein E 932309..933727 Burkholderia ambifaria MC40-6 6181112 YP_001810614.1 CDS BamMC406_3932 NC_010552.1 933724 934701 D PFAM: type II secretion system protein; KEGG: bam:Bamb_3425 type II secretion system protein; type II secretion system protein 933724..934701 Burkholderia ambifaria MC40-6 6181113 YP_001810615.1 CDS BamMC406_3933 NC_010552.1 934698 935642 D PFAM: type II secretion system protein; KEGG: bam:Bamb_3426 type II secretion system protein; type II secretion system protein 934698..935642 Burkholderia ambifaria MC40-6 6179140 YP_001810616.1 CDS BamMC406_3934 NC_010552.1 935639 936496 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_3427 tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein 935639..936496 Burkholderia ambifaria MC40-6 6179141 YP_001810617.1 CDS BamMC406_3935 NC_010552.1 936493 936921 D PFAM: TadE family protein; KEGG: bam:Bamb_3428 TadE family protein; TadE family protein 936493..936921 Burkholderia ambifaria MC40-6 6179142 YP_001810618.1 CDS BamMC406_3936 NC_010552.1 936914 937954 D KEGG: bam:Bamb_3429 hypothetical protein; hypothetical protein 936914..937954 Burkholderia ambifaria MC40-6 6181189 YP_001810619.1 CDS BamMC406_3937 NC_010552.1 937918 939093 R KEGG: bam:Bamb_3430 hypothetical protein; hypothetical protein complement(937918..939093) Burkholderia ambifaria MC40-6 6181190 YP_001810620.1 CDS BamMC406_3938 NC_010552.1 939199 940275 R PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_3431 glycosyl transferase, family 2; ribonuclease III complement(939199..940275) Burkholderia ambifaria MC40-6 6181191 YP_001810621.1 CDS BamMC406_3939 NC_010552.1 940549 940941 D KEGG: bam:Bamb_3432 hypothetical protein; hypothetical protein 940549..940941 Burkholderia ambifaria MC40-6 6180636 YP_001810622.1 CDS BamMC406_3940 NC_010552.1 940958 941947 R KEGG: bam:Bamb_3433 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein complement(940958..941947) Burkholderia ambifaria MC40-6 6180637 YP_001810623.1 CDS BamMC406_3941 NC_010552.1 942086 942964 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3434 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(942086..942964) Burkholderia ambifaria MC40-6 6180638 YP_001810624.1 CDS BamMC406_3942 NC_010552.1 943065 944624 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3436 major facilitator superfamily MFS_1; major facilitator transporter 943065..944624 Burkholderia ambifaria MC40-6 6180311 YP_001810625.1 CDS BamMC406_3943 NC_010552.1 944763 945929 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3437 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(944763..945929) Burkholderia ambifaria MC40-6 6180312 YP_001810626.1 CDS BamMC406_3944 NC_010552.1 946302 946571 D KEGG: lma:LmjF28.3010 hypothetical protein, conserved; hypothetical protein 946302..946571 Burkholderia ambifaria MC40-6 6179743 YP_001810627.1 CDS BamMC406_3945 NC_010552.1 946751 947305 D KEGG: bam:Bamb_3438 hypothetical protein; hypothetical protein 946751..947305 Burkholderia ambifaria MC40-6 6179744 YP_001810628.1 CDS BamMC406_3946 NC_010552.1 947366 948127 R KEGG: bam:Bamb_3439 hypothetical protein; hypothetical protein complement(947366..948127) Burkholderia ambifaria MC40-6 6179745 YP_001810629.1 CDS BamMC406_3947 NC_010552.1 948670 949002 D KEGG: bam:Bamb_3440 hypothetical protein; hypothetical protein 948670..949002 Burkholderia ambifaria MC40-6 6179755 YP_001810630.1 CDS BamMC406_3948 NC_010552.1 949092 949982 R KEGG: bam:Bamb_3441 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(949092..949982) Burkholderia ambifaria MC40-6 6179756 YP_001810631.1 CDS BamMC406_3949 NC_010552.1 949997 951523 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3442 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(949997..951523) Burkholderia ambifaria MC40-6 6179757 YP_001810632.1 CDS BamMC406_3950 NC_010552.1 951644 952963 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_3443 major facilitator superfamily MFS_1; major facilitator transporter complement(951644..952963) Burkholderia ambifaria MC40-6 6180622 YP_001810633.1 CDS BamMC406_3951 NC_010552.1 953108 954067 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3444 transcriptional regulator, LysR family; LysR family transcriptional regulator 953108..954067 Burkholderia ambifaria MC40-6 6180623 YP_001810634.1 CDS BamMC406_3952 NC_010552.1 954176 955099 R KEGG: bur:Bcep18194_B2028 hypothetical protein; hypothetical protein complement(954176..955099) Burkholderia ambifaria MC40-6 6180624 YP_001810635.1 CDS BamMC406_3953 NC_010552.1 955207 955965 R TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_3446 haloacid dehalogenase, type II; haloacid dehalogenase, type II complement(955207..955965) Burkholderia ambifaria MC40-6 6180630 YP_001810636.1 CDS BamMC406_3955 NC_010552.1 956434 958683 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: bam:Bamb_3448 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 956434..958683 Burkholderia ambifaria MC40-6 6180608 YP_001810637.1 CDS BamMC406_3956 NC_010552.1 958688 959761 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: bam:Bamb_3449 diguanylate cyclase; response regulator receiver modulated diguanylate cyclase complement(958688..959761) Burkholderia ambifaria MC40-6 6180632 YP_001810638.1 CDS BamMC406_3957 NC_010552.1 959817 960821 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(959817..960821) Burkholderia ambifaria MC40-6 6180950 YP_001810639.1 CDS BamMC406_3958 NC_010552.1 961216 961440 R KEGG: bam:Bamb_3451 hypothetical protein; hypothetical protein complement(961216..961440) Burkholderia ambifaria MC40-6 6180951 YP_001810640.1 CDS BamMC406_3959 NC_010552.1 961734 962423 D PFAM: protein of unknown function DUF969; KEGG: bam:Bamb_3452 protein of unknown function DUF969; hypothetical protein 961734..962423 Burkholderia ambifaria MC40-6 6180952 YP_001810641.1 CDS BamMC406_3960 NC_010552.1 962420 963370 D PFAM: protein of unknown function DUF979; KEGG: bam:Bamb_3453 protein of unknown function DUF979; hypothetical protein 962420..963370 Burkholderia ambifaria MC40-6 6180991 YP_001810642.1 CDS BamMC406_3961 NC_010552.1 963381 964403 D KEGG: bam:Bamb_3454 hypothetical protein; hypothetical protein 963381..964403 Burkholderia ambifaria MC40-6 6180992 YP_001810643.1 CDS BamMC406_3962 NC_010552.1 964555 965619 D PFAM: L-asparaginase II; KEGG: bam:Bamb_3455 L-asparaginase II; L-asparaginase II 964555..965619 Burkholderia ambifaria MC40-6 6181133 YP_001810644.1 CDS BamMC406_3963 NC_010552.1 965703 966677 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3456 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(965703..966677) Burkholderia ambifaria MC40-6 6181134 YP_001810645.1 CDS aspA NC_010552.1 966833 968239 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 966833..968239 Burkholderia ambifaria MC40-6 6181135 YP_001810646.1 CDS BamMC406_3965 NC_010552.1 968343 969836 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_3458 amino acid permease-associated region; amino acid permease-associated protein 968343..969836 Burkholderia ambifaria MC40-6 6181479 YP_001810647.1 CDS BamMC406_3966 NC_010552.1 969880 970569 R PFAM: phospholipase/Carboxylesterase; KEGG: bam:Bamb_3459 phospholipase/carboxylesterase; phospholipase/carboxylesterase complement(969880..970569) Burkholderia ambifaria MC40-6 6181480 YP_001810648.1 CDS BamMC406_3967 NC_010552.1 970833 971075 D PFAM: SpoVT/AbrB domain protein; KEGG: bam:Bamb_3460 SpoVT/AbrB domain protein; SpoVT/AbrB domain-containing protein 970833..971075 Burkholderia ambifaria MC40-6 6181481 YP_001810649.1 CDS BamMC406_3968 NC_010552.1 971072 971479 D PFAM: PilT protein domain protein; KEGG: bam:Bamb_3461 PilT protein domain protein; PilT domain-containing protein 971072..971479 Burkholderia ambifaria MC40-6 6180633 YP_001810650.1 CDS BamMC406_3969 NC_010552.1 971975 974365 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: PAC repeat-containing protein; KEGG: bam:Bamb_3462 putative CheA signal transduction histidine kinases; putative CheA signal transduction histidine kinase 971975..974365 Burkholderia ambifaria MC40-6 6180634 YP_001810651.1 CDS BamMC406_3970 NC_010552.1 974368 975108 D PFAM: chemotaxis sensory transducer; KEGG: bam:Bamb_3463 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 974368..975108 Burkholderia ambifaria MC40-6 6180635 YP_001810652.1 CDS BamMC406_3971 NC_010552.1 975105 975689 D KEGG: bam:Bamb_3464 hypothetical protein; hypothetical protein 975105..975689 Burkholderia ambifaria MC40-6 6180743 YP_001810653.1 CDS BamMC406_3972 NC_010552.1 975712 976671 D KEGG: bur:Bcep18194_B1976 hypothetical protein; hypothetical protein 975712..976671 Burkholderia ambifaria MC40-6 6180744 YP_001810654.1 CDS BamMC406_3973 NC_010552.1 976707 977072 D PFAM: response regulator receiver; KEGG: bam:Bamb_3466 response regulator receiver protein; response regulator receiver protein 976707..977072 Burkholderia ambifaria MC40-6 6180745 YP_001810655.1 CDS BamMC406_3974 NC_010552.1 977170 977964 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 977170..977964 Burkholderia ambifaria MC40-6 6179483 YP_001810656.1 CDS BamMC406_3975 NC_010552.1 977859 978077 R hypothetical protein complement(977859..978077) Burkholderia ambifaria MC40-6 6179484 YP_001810657.1 CDS BamMC406_3976 NC_010552.1 978090 979211 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(978090..979211) Burkholderia ambifaria MC40-6 6179485 YP_001810658.1 CDS BamMC406_3977 NC_010552.1 979516 979887 D KEGG: bam:Bamb_3491 membrane protein-like protein; hypothetical protein 979516..979887 Burkholderia ambifaria MC40-6 6179886 YP_001810659.1 CDS BamMC406_3978 NC_010552.1 980162 981211 D PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: bam:Bamb_3495 peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 980162..981211 Burkholderia ambifaria MC40-6 6179887 YP_001810660.1 CDS BamMC406_3979 NC_010552.1 981227 982561 D PFAM: aminotransferase class-III; KEGG: bam:Bamb_3496 hypothetical protein; hypothetical protein 981227..982561 Burkholderia ambifaria MC40-6 6181524 YP_001810661.1 CDS BamMC406_3980 NC_010552.1 982587 983141 D KEGG: bam:Bamb_3497 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 982587..983141 Burkholderia ambifaria MC40-6 6181525 YP_001810662.1 CDS BamMC406_3981 NC_010552.1 983351 984250 D PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: bam:Bamb_3498 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 983351..984250 Burkholderia ambifaria MC40-6 6181526 YP_001810663.1 CDS BamMC406_3982 NC_010552.1 984422 985276 D KEGG: bam:Bamb_3499 hypothetical protein; hypothetical protein 984422..985276 Burkholderia ambifaria MC40-6 6179352 YP_001810664.1 CDS BamMC406_3983 NC_010552.1 985391 986989 R TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_3500 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alkyl hydroperoxide reductase, F subunit complement(985391..986989) Burkholderia ambifaria MC40-6 6179353 YP_001810665.1 CDS BamMC406_3984 NC_010552.1 987114 987677 R TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_3501 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; peroxiredoxin complement(987114..987677) Burkholderia ambifaria MC40-6 6179354 YP_001810666.1 CDS BamMC406_3985 NC_010552.1 987998 988981 D SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3502 extracellular solute-binding protein, family 3; extracellular solute-binding protein 987998..988981 Burkholderia ambifaria MC40-6 6179468 YP_001810667.1 CDS BamMC406_3986 NC_010552.1 988983 990287 D PFAM: sodium:dicarboxylate symporter; KEGG: bam:Bamb_3503 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 988983..990287 Burkholderia ambifaria MC40-6 6179469 YP_001810668.1 CDS BamMC406_3987 NC_010552.1 990298 990999 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: bam:Bamb_3504 aspartate racemase; aspartate racemase 990298..990999 Burkholderia ambifaria MC40-6 6179470 YP_001810669.1 CDS BamMC406_3988 NC_010552.1 991093 991986 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3505 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(991093..991986) Burkholderia ambifaria MC40-6 6179551 YP_001810670.1 CDS BamMC406_3989 NC_010552.1 992164 993330 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_3506 extracellular ligand-binding receptor; extracellular ligand-binding receptor 992164..993330 Burkholderia ambifaria MC40-6 6179552 YP_001810671.1 CDS BamMC406_3990 NC_010552.1 993347 993886 D KEGG: bam:Bamb_3507 hypothetical protein; hypothetical protein 993347..993886 Burkholderia ambifaria MC40-6 6179553 YP_001810672.1 CDS BamMC406_3991 NC_010552.1 993879 995135 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 993879..995135 Burkholderia ambifaria MC40-6 6181334 YP_001810673.1 CDS BamMC406_3992 NC_010552.1 995146 995982 R PFAM: cytochrome c class I; KEGG: bam:Bamb_3509 cytochrome c, class I; cytochrome c class I complement(995146..995982) Burkholderia ambifaria MC40-6 6181335 YP_001810674.1 CDS BamMC406_3993 NC_010552.1 996252 997553 R KEGG: bam:Bamb_3510 hypothetical protein; hypothetical protein complement(996252..997553) Burkholderia ambifaria MC40-6 6181336 YP_001810675.1 CDS BamMC406_3994 NC_010552.1 997550 999373 R TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: bam:Bamb_3511 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glucosamine--fructose-6-phosphate aminotransferase complement(997550..999373) Burkholderia ambifaria MC40-6 6181105 YP_001810676.1 CDS BamMC406_3995 NC_010552.1 999496 999984 R KEGG: bam:Bamb_3512 hypothetical protein; hypothetical protein complement(999496..999984) Burkholderia ambifaria MC40-6 6181106 YP_001810677.1 CDS BamMC406_3996 NC_010552.1 999962 1001233 R predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase complement(999962..1001233) Burkholderia ambifaria MC40-6 6180791 YP_001810678.1 CDS BamMC406_3997 NC_010552.1 1001230 1003323 R PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_3514 polysaccharide deacetylase; polysaccharide deacetylase complement(1001230..1003323) Burkholderia ambifaria MC40-6 6180792 YP_001810679.1 CDS BamMC406_3998 NC_010552.1 1003339 1006395 R KEGG: bam:Bamb_3515 hypothetical protein; hypothetical protein complement(1003339..1006395) Burkholderia ambifaria MC40-6 6180793 YP_001810680.1 CDS BamMC406_3999 NC_010552.1 1006500 1007255 R KEGG: bam:Bamb_3516 hypothetical protein; hypothetical protein complement(1006500..1007255) Burkholderia ambifaria MC40-6 6179404 YP_001810681.1 CDS BamMC406_4000 NC_010552.1 1007341 1007781 R KEGG: bam:Bamb_3517 hypothetical protein; hypothetical protein complement(1007341..1007781) Burkholderia ambifaria MC40-6 6179405 YP_001810682.1 CDS BamMC406_4001 NC_010552.1 1008461 1009453 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3518 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1008461..1009453) Burkholderia ambifaria MC40-6 6179406 YP_001810683.1 CDS BamMC406_4002 NC_010552.1 1010119 1011534 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bam:Bamb_3519 protein of unknown function DUF404; hypothetical protein 1010119..1011534 Burkholderia ambifaria MC40-6 6179442 YP_001810684.1 CDS BamMC406_4003 NC_010552.1 1011599 1012540 D PFAM: protein of unknown function DUF403; KEGG: bam:Bamb_3520 protein of unknown function DUF403; hypothetical protein 1011599..1012540 Burkholderia ambifaria MC40-6 6179443 YP_001810685.1 CDS BamMC406_4004 NC_010552.1 1012549 1013553 D PFAM: transglutaminase domain protein; KEGG: bam:Bamb_3521 transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 1012549..1013553 Burkholderia ambifaria MC40-6 6179444 YP_001810686.1 CDS BamMC406_4005 NC_010552.1 1013647 1017081 D PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bam:Bamb_3522 transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 1013647..1017081 Burkholderia ambifaria MC40-6 6179714 YP_001810687.1 CDS BamMC406_4006 NC_010552.1 1017252 1019900 D PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bam:Bamb_3523 protein of unknown function DUF404; hypothetical protein 1017252..1019900 Burkholderia ambifaria MC40-6 6179715 YP_001810688.1 CDS BamMC406_4007 NC_010552.1 1019894 1020952 D PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bam:Bamb_3524 transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 1019894..1020952 Burkholderia ambifaria MC40-6 6179716 YP_001810689.1 CDS BamMC406_4008 NC_010552.1 1021136 1021408 D KEGG: bam:Bamb_3525 hypothetical protein; hypothetical protein 1021136..1021408 Burkholderia ambifaria MC40-6 6180035 YP_001810690.1 CDS BamMC406_4009 NC_010552.1 1021476 1022408 R KEGG: bam:Bamb_3526 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase complement(1021476..1022408) Burkholderia ambifaria MC40-6 6180036 YP_001810691.1 CDS BamMC406_4010 NC_010552.1 1022724 1023875 D PFAM: acyltransferase 3; KEGG: bam:Bamb_3527 acyltransferase 3; acyltransferase 3 1022724..1023875 Burkholderia ambifaria MC40-6 6180037 YP_001810692.1 CDS BamMC406_4011 NC_010552.1 1023904 1024722 R KEGG: bam:Bamb_3528 hypothetical protein; hypothetical protein complement(1023904..1024722) Burkholderia ambifaria MC40-6 6180501 YP_001810693.1 CDS BamMC406_4012 NC_010552.1 1024757 1025140 R KEGG: bam:Bamb_3529 hypothetical protein; hypothetical protein complement(1024757..1025140) Burkholderia ambifaria MC40-6 6180502 YP_001810694.1 CDS BamMC406_4013 NC_010552.1 1025667 1030124 D KEGG: dar:Daro_1374 hypothetical protein; hypothetical protein 1025667..1030124 Burkholderia ambifaria MC40-6 6180802 YP_001810695.1 CDS BamMC406_4014 NC_010552.1 1030308 1031372 R TIGRFAM: 2-aminoethylphosphonate aminotransferase; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bam:Bamb_3533 aminotransferase, class V; 2-aminoethylphosphonate aminotransferase complement(1030308..1031372) Burkholderia ambifaria MC40-6 6180803 YP_001810696.1 CDS BamMC406_4015 NC_010552.1 1031372 1032568 R TIGRFAM: phosphonopyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: bam:Bamb_3534 thiamine pyrophosphate enzyme domain protein TPP-binding; phosphonopyruvate decarboxylase complement(1031372..1032568) Burkholderia ambifaria MC40-6 6180804 YP_001810697.1 CDS BamMC406_4016 NC_010552.1 1032565 1034253 R TIGRFAM: phosphoenolpyruvate phosphomutase; KEGG: bam:Bamb_3535 phosphoenolpyruvate phosphomutase; phosphoenolpyruvate phosphomutase complement(1032565..1034253) Burkholderia ambifaria MC40-6 6181168 YP_001810698.1 CDS BamMC406_4017 NC_010552.1 1034250 1035017 R KEGG: bam:Bamb_3536 sugar nucleotidyltransferase-like protein; sugar nucleotidyltransferase-like protein complement(1034250..1035017) Burkholderia ambifaria MC40-6 6181169 YP_001810699.1 CDS BamMC406_4018 NC_010552.1 1035054 1036055 R TIGRFAM: membrane protein; KEGG: bam:Bamb_3537 hypothetical protein; membrane protein complement(1035054..1036055) Burkholderia ambifaria MC40-6 6181170 YP_001810700.1 CDS BamMC406_4019 NC_010552.1 1036052 1036861 R PFAM: 2OG-Fe(II) oxygenase; KEGG: bam:Bamb_3538 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(1036052..1036861) Burkholderia ambifaria MC40-6 6181434 YP_001810701.1 CDS BamMC406_4020 NC_010552.1 1036858 1037538 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bam:Bamb_3539 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(1036858..1037538) Burkholderia ambifaria MC40-6 6181435 YP_001810702.1 CDS BamMC406_4021 NC_010552.1 1038178 1039692 D KEGG: bam:Bamb_3540 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 1038178..1039692 Burkholderia ambifaria MC40-6 6181436 YP_001810703.1 CDS BamMC406_4022 NC_010552.1 1039904 1040329 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bam:Bamb_3541 transcriptional regulator, MerR family; MerR family transcriptional regulator 1039904..1040329 Burkholderia ambifaria MC40-6 6181283 YP_001810704.1 CDS BamMC406_4023 NC_010552.1 1040408 1041286 R SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: bam:Bamb_3542 helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix DNA-binding class 1 complement(1040408..1041286) Burkholderia ambifaria MC40-6 6181284 YP_001810705.1 CDS BamMC406_4024 NC_010552.1 1041475 1043037 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: bam:Bamb_3543 RNA polymerase, sigma 38 subunit, RpoS; RpoD family RNA polymerase sigma factor complement(1041475..1043037) Burkholderia ambifaria MC40-6 6181285 YP_001810706.1 CDS BamMC406_4025 NC_010552.1 1043345 1043779 D KEGG: bam:Bamb_3544 hypothetical protein; hypothetical protein 1043345..1043779 Burkholderia ambifaria MC40-6 6181512 YP_001810707.1 CDS BamMC406_4026 NC_010552.1 1043813 1044682 D PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; KEGG: bam:Bamb_3545 SH3, type 3 domain protein; SH3 type 3 domain-containing protein 1043813..1044682 Burkholderia ambifaria MC40-6 6181513 YP_001810708.1 CDS BamMC406_4027 NC_010552.1 1044799 1046658 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1044799..1046658) Burkholderia ambifaria MC40-6 6181514 YP_001810709.1 CDS BamMC406_4028 NC_010552.1 1046970 1047992 R PFAM: Malate/L-lactate dehydrogenase; KEGG: bam:Bamb_3547 malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase complement(1046970..1047992) Burkholderia ambifaria MC40-6 6180286 YP_001810710.1 CDS BamMC406_4029 NC_010552.1 1047985 1049577 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3548 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1047985..1049577) Burkholderia ambifaria MC40-6 6180287 YP_001810711.1 CDS BamMC406_4030 NC_010552.1 1049650 1051275 R PFAM: amino acid permease-associated region; KEGG: bam:Bamb_3549 amino acid permease-associated region; amino acid permease-associated protein complement(1049650..1051275) Burkholderia ambifaria MC40-6 6181004 YP_001810712.1 CDS BamMC406_4031 NC_010552.1 1051744 1052679 D PFAM: proline racemase; KEGG: bam:Bamb_3550 proline racemase; hydroxyproline-2-epimerase 1051744..1052679 Burkholderia ambifaria MC40-6 6181005 YP_001810713.1 CDS BamMC406_4032 NC_010552.1 1052676 1053803 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_3551 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1052676..1053803 Burkholderia ambifaria MC40-6 6181006 YP_001810714.1 CDS BamMC406_4033 NC_010552.1 1053904 1054137 D PFAM: ferredoxin; KEGG: bam:Bamb_3552 ferredoxin; ferredoxin 1053904..1054137 Burkholderia ambifaria MC40-6 6181037 YP_001810715.1 CDS BamMC406_4034 NC_010552.1 1054134 1055414 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_3553 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1054134..1055414 Burkholderia ambifaria MC40-6 6181038 YP_001810716.1 CDS BamMC406_4035 NC_010552.1 1055548 1055898 D PFAM: regulatory protein ArsR; KEGG: bam:Bamb_3554 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1055548..1055898 Burkholderia ambifaria MC40-6 6181039 YP_001810717.1 CDS BamMC406_4036 NC_010552.1 1055888 1056322 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: bur:Bcep18194_B1883 YeeE/YedE family membrane protein; hypothetical protein 1055888..1056322 Burkholderia ambifaria MC40-6 6181464 YP_001810718.1 CDS BamMC406_4037 NC_010552.1 1056324 1056746 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: bam:Bamb_3556 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 1056324..1056746 Burkholderia ambifaria MC40-6 6181465 YP_001810719.1 CDS BamMC406_4038 NC_010552.1 1056867 1057217 R KEGG: bam:Bamb_3557 hypothetical protein; hypothetical protein complement(1056867..1057217) Burkholderia ambifaria MC40-6 6181466 YP_001810720.1 CDS BamMC406_4039 NC_010552.1 1057421 1058905 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_3558 transcriptional regulator, GntR family; transcriptional regulator 1057421..1058905 Burkholderia ambifaria MC40-6 6181428 YP_001810721.1 CDS BamMC406_4040 NC_010552.1 1059050 1059325 R KEGG: bam:Bamb_3559 hypothetical protein; hypothetical protein complement(1059050..1059325) Burkholderia ambifaria MC40-6 6181429 YP_001810722.1 CDS BamMC406_4041 NC_010552.1 1059422 1060768 R PFAM: Di-haem cytochrome c peroxidase; KEGG: bam:Bamb_3560 di-haem cytochrome c peroxidase; di-heme cytochrome c peroxidase complement(1059422..1060768) Burkholderia ambifaria MC40-6 6181430 YP_001810723.1 CDS BamMC406_4042 NC_010552.1 1061023 1062486 R PFAM: metallophosphoesterase; KEGG: bam:Bamb_3561 metallophosphoesterase; metallophosphoesterase complement(1061023..1062486) Burkholderia ambifaria MC40-6 6180720 YP_001810724.1 CDS BamMC406_4043 NC_010552.1 1062667 1063515 D PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_3562 methyltransferase type 11; type 11 methyltransferase 1062667..1063515 Burkholderia ambifaria MC40-6 6180721 YP_001810725.1 CDS BamMC406_4044 NC_010552.1 1063613 1063924 R KEGG: bur:Bcep18194_B1875 hypothetical protein; hypothetical protein complement(1063613..1063924) Burkholderia ambifaria MC40-6 6180722 YP_001810726.1 CDS BamMC406_4045 NC_010552.1 1063986 1066007 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: bch:Bcen2424_4156 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter complement(1063986..1066007) Burkholderia ambifaria MC40-6 6180590 YP_001810727.1 CDS BamMC406_4046 NC_010552.1 1066311 1067507 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_3564 porin, gram-negative type; porin complement(1066311..1067507) Burkholderia ambifaria MC40-6 6180591 YP_001810728.1 CDS BamMC406_4047 NC_010552.1 1067625 1070045 R PFAM: glycoside hydrolase family 31; KEGG: bam:Bamb_3565 alpha-glucosidase; glycoside hydrolase family protein complement(1067625..1070045) Burkholderia ambifaria MC40-6 6180509 YP_001810729.1 CDS BamMC406_4048 NC_010552.1 1070073 1071344 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3566 major facilitator superfamily MFS_1; major facilitator transporter complement(1070073..1071344) Burkholderia ambifaria MC40-6 6180510 YP_001810730.1 CDS BamMC406_4049 NC_010552.1 1071790 1072740 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bam:Bamb_3568 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1071790..1072740 Burkholderia ambifaria MC40-6 6180511 YP_001810731.1 CDS BamMC406_4050 NC_010552.1 1072737 1073744 D PFAM: peptidase T2 asparaginase 2; KEGG: bam:Bamb_3569 peptidase T2, asparaginase 2; peptidase T2 asparaginase 2 1072737..1073744 Burkholderia ambifaria MC40-6 6180939 YP_001810732.1 CDS BamMC406_4051 NC_010552.1 1073772 1075673 D KEGG: bam:Bamb_3570 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase subunit 1073772..1075673 Burkholderia ambifaria MC40-6 6180940 YP_001810733.1 CDS BamMC406_4052 NC_010552.1 1075804 1077366 D PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_3571 extracellular solute-binding protein, family 5; extracellular solute-binding protein 1075804..1077366 Burkholderia ambifaria MC40-6 6180941 YP_001810734.1 CDS BamMC406_4053 NC_010552.1 1077434 1078354 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3572 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1077434..1078354 Burkholderia ambifaria MC40-6 6179692 YP_001810735.1 CDS BamMC406_4054 NC_010552.1 1078362 1079255 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3573 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1078362..1079255 Burkholderia ambifaria MC40-6 6179693 YP_001810736.1 CDS BamMC406_4055 NC_010552.1 1079255 1080337 D PFAM: peptidase S58 DmpA; KEGG: bam:Bamb_3574 peptidase S58, DmpA; peptidase S58 DmpA 1079255..1080337 Burkholderia ambifaria MC40-6 6179694 YP_001810737.1 CDS BamMC406_4056 NC_010552.1 1080334 1081161 D PFAM: peptidase M55 D-aminopeptidase; KEGG: bam:Bamb_3575 peptidase M55, D-aminopeptidase; peptidase M55 D-aminopeptidase 1080334..1081161 Burkholderia ambifaria MC40-6 6181408 YP_001810738.1 CDS BamMC406_4057 NC_010552.1 1081283 1082194 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_3576 transcriptional regulator, AraC family; AraC family transcriptional regulator 1081283..1082194 Burkholderia ambifaria MC40-6 6181409 YP_001810739.1 CDS BamMC406_4058 NC_010552.1 1082634 1083227 R KEGG: bam:Bamb_3578 protocatechuate 3,4-dioxygenase, alpha subunit; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha complement(1082634..1083227) Burkholderia ambifaria MC40-6 6181410 YP_001810740.1 CDS BamMC406_4059 NC_010552.1 1083231 1083938 R TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: bam:Bamb_3579 protocatechuate 3,4-dioxygenase, beta subunit; protocatechuate 3,4-dioxygenase subunit beta complement(1083231..1083938) Burkholderia ambifaria MC40-6 6179972 YP_001810741.1 CDS BamMC406_4060 NC_010552.1 1084242 1084805 R KEGG: bam:Bamb_3580 hypothetical protein; hypothetical protein complement(1084242..1084805) Burkholderia ambifaria MC40-6 6179973 YP_001810742.1 CDS BamMC406_4061 NC_010552.1 1084926 1085663 D PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_3581 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 1084926..1085663 Burkholderia ambifaria MC40-6 6179974 YP_001810743.1 CDS BamMC406_4062 NC_010552.1 1085741 1086727 D TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3582 transcriptional regulator, LysR family; LysR family transcriptional regulator 1085741..1086727 Burkholderia ambifaria MC40-6 6181136 YP_001810744.1 CDS BamMC406_4063 NC_010552.1 1086862 1087221 D PFAM: protein of unknown function DUF891; KEGG: bam:Bamb_3583 protein of unknown function DUF891; hypothetical protein 1086862..1087221 Burkholderia ambifaria MC40-6 6181137 YP_001810745.1 CDS BamMC406_4064 NC_010552.1 1087291 1087587 D KEGG: bam:Bamb_3584 hypothetical protein; hypothetical protein 1087291..1087587 Burkholderia ambifaria MC40-6 6181138 YP_001810746.1 CDS BamMC406_4065 NC_010552.1 1087684 1088958 R PFAM: Spore germination protein; amino acid permease-associated region; KEGG: bam:Bamb_3590 amino acid permease-associated region; amino acid permease-associated protein complement(1087684..1088958) Burkholderia ambifaria MC40-6 6181059 YP_001810747.1 CDS BamMC406_4066 NC_010552.1 1089090 1093607 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: bam:Bamb_3591 DEAD/H associated domain protein; DEAD/DEAH box helicase domain-containing protein complement(1089090..1093607) Burkholderia ambifaria MC40-6 6181060 YP_001810748.1 CDS BamMC406_4067 NC_010552.1 1093850 1094374 R KEGG: bam:Bamb_3592 hypothetical protein; hypothetical protein complement(1093850..1094374) Burkholderia ambifaria MC40-6 6180138 YP_001810749.1 CDS BamMC406_4068 NC_010552.1 1094771 1096492 D KEGG: bam:Bamb_3593 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1094771..1096492 Burkholderia ambifaria MC40-6 6180139 YP_001810750.1 CDS BamMC406_4069 NC_010552.1 1096715 1097665 D PFAM: protein of unknown function DUF344; KEGG: bam:Bamb_3594 protein of unknown function DUF344; hypothetical protein 1096715..1097665 Burkholderia ambifaria MC40-6 6180140 YP_001810751.1 CDS BamMC406_4070 NC_010552.1 1097721 1098008 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bam:Bamb_3595 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(1097721..1098008) Burkholderia ambifaria MC40-6 6181010 YP_001810752.1 CDS BamMC406_4071 NC_010552.1 1098201 1098788 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: bam:Bamb_3596 protein of unknown function UPF0029; hypothetical protein complement(1098201..1098788) Burkholderia ambifaria MC40-6 6181011 YP_001810753.1 CDS BamMC406_4072 NC_010552.1 1099093 1099788 D KEGG: bam:Bamb_3597 hypothetical protein; hypothetical protein 1099093..1099788 Burkholderia ambifaria MC40-6 6181012 YP_001810754.1 CDS BamMC406_4073 NC_010552.1 1099772 1100566 D PFAM: phospholipid/glycerol acyltransferase; KEGG: bam:Bamb_3598 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1099772..1100566 Burkholderia ambifaria MC40-6 6180886 YP_001810755.1 CDS BamMC406_4074 NC_010552.1 1100541 1100846 D KEGG: bam:Bamb_3599 putative acyl-carrier-protein; putative acyl-carrier-protein 1100541..1100846 Burkholderia ambifaria MC40-6 6180887 YP_001810756.1 CDS BamMC406_4075 NC_010552.1 1100843 1101091 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1100843..1101091 Burkholderia ambifaria MC40-6 6180888 YP_001810757.1 CDS BamMC406_4076 NC_010552.1 1101088 1101729 D KEGG: bam:Bamb_3601 hypothetical protein; hypothetical protein 1101088..1101729 Burkholderia ambifaria MC40-6 6179626 YP_001810758.1 CDS BamMC406_4077 NC_010552.1 1101726 1103417 D PFAM: AMP-dependent synthetase and ligase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bam:Bamb_3602 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1101726..1103417 Burkholderia ambifaria MC40-6 6179627 YP_001810759.1 CDS BamMC406_4078 NC_010552.1 1103414 1105120 D PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: bam:Bamb_3603 glycosyl transferase, family 2; glycosyl transferase family protein 1103414..1105120 Burkholderia ambifaria MC40-6 6179628 YP_001810760.1 CDS BamMC406_4079 NC_010552.1 1105107 1106729 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: bam:Bamb_3604 histidine ammonia-lyase; histidine ammonia-lyase 1105107..1106729 Burkholderia ambifaria MC40-6 6181195 YP_001810761.1 CDS BamMC406_4080 NC_010552.1 1106726 1107154 D PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_3605 thioesterase superfamily protein; thioesterase superfamily protein 1106726..1107154 Burkholderia ambifaria MC40-6 6181196 YP_001810762.1 CDS BamMC406_4081 NC_010552.1 1107145 1107822 D KEGG: bam:Bamb_3606 conserved hypothetical signal peptide protein; putative signal peptide protein 1107145..1107822 Burkholderia ambifaria MC40-6 6181197 YP_001810763.1 CDS BamMC406_4082 NC_010552.1 1107822 1110230 D KEGG: bam:Bamb_3607 putative lipoprotein transmembrane; putative lipoprotein transmembrane 1107822..1110230 Burkholderia ambifaria MC40-6 6180147 YP_001810764.1 CDS BamMC406_4083 NC_010552.1 1110227 1111414 D FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 1110227..1111414 Burkholderia ambifaria MC40-6 6180148 YP_001810765.1 CDS BamMC406_4084 NC_010552.1 1111416 1111919 D PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bam:Bamb_3609 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 1111416..1111919 Burkholderia ambifaria MC40-6 6180149 YP_001810766.1 CDS BamMC406_4085 NC_010552.1 1111916 1112641 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3610 short chain dehydrogenase; short chain dehydrogenase 1111916..1112641 Burkholderia ambifaria MC40-6 6180070 YP_001810767.1 CDS BamMC406_4086 NC_010552.1 1112641 1113870 D FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1112641..1113870 Burkholderia ambifaria MC40-6 6180071 YP_001810768.1 CDS BamMC406_4087 NC_010552.1 1113867 1115105 D PFAM: Beta-ketoacyl synthase; KEGG: bam:Bamb_3612 beta-ketoacyl synthase; beta-ketoacyl synthase 1113867..1115105 Burkholderia ambifaria MC40-6 6180072 YP_001810769.1 CDS BamMC406_4088 NC_010552.1 1115138 1115563 D KEGG: bam:Bamb_3613 conserved hypothetical signal peptide protein; putative signal peptide protein 1115138..1115563 Burkholderia ambifaria MC40-6 6179955 YP_001810770.1 CDS BamMC406_4089 NC_010552.1 1115575 1116009 D KEGG: bam:Bamb_3614 excinuclease ATPase subunit; excinuclease ATPase subunit 1115575..1116009 Burkholderia ambifaria MC40-6 6179956 YP_001810771.1 CDS BamMC406_4090 NC_010552.1 1116055 1116774 R PFAM: protein of unknown function DUF691 methyltransferase-related; Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_3615 methyltransferase type 11; type 11 methyltransferase complement(1116055..1116774) Burkholderia ambifaria MC40-6 6179749 YP_001810772.1 CDS BamMC406_4091 NC_010552.1 1116885 1118132 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: bam:Bamb_3616 tryptophan halogenase; tryptophan halogenase 1116885..1118132 Burkholderia ambifaria MC40-6 6179750 YP_001810773.1 CDS BamMC406_4092 NC_010552.1 1118198 1120399 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: bam:Bamb_3617 beta-glucosidase; beta-glucosidase complement(1118198..1120399) Burkholderia ambifaria MC40-6 6179751 YP_001810774.1 CDS BamMC406_4093 NC_010552.1 1120853 1122112 R PFAM: polysaccharide biosynthesis protein; KEGG: bam:Bamb_3618 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1120853..1122112) Burkholderia ambifaria MC40-6 6179542 YP_001810775.1 CDS BamMC406_4094 NC_010552.1 1122692 1124548 D KEGG: bam:Bamb_3619 hypothetical protein; hypothetical protein 1122692..1124548 Burkholderia ambifaria MC40-6 6179543 YP_001810776.1 CDS BamMC406_4095 NC_010552.1 1124688 1125170 R KEGG: bam:Bamb_3620 hypothetical protein; hypothetical protein complement(1124688..1125170) Burkholderia ambifaria MC40-6 6179544 YP_001810777.1 CDS BamMC406_4096 NC_010552.1 1125246 1126469 D PFAM: polysaccharide export protein; KEGG: bam:Bamb_3621 polysaccharide export protein; polysaccharide export protein 1125246..1126469 Burkholderia ambifaria MC40-6 6179364 YP_001810778.1 CDS BamMC406_4097 NC_010552.1 1126528 1128810 D KEGG: bam:Bamb_3622 hypothetical protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; SMART: AAA ATPase; exopolysaccharide tyrosine-protein kinase 1126528..1128810 Burkholderia ambifaria MC40-6 6179365 YP_001810779.1 CDS BamMC406_4098 NC_010552.1 1128879 1130219 D KEGG: bam:Bamb_3623 hypothetical protein; hypothetical protein 1128879..1130219 Burkholderia ambifaria MC40-6 6179366 YP_001810780.1 CDS BamMC406_4099 NC_010552.1 1130224 1131414 D PFAM: acyltransferase 3; KEGG: bam:Bamb_3624 acyltransferase 3; acyltransferase 3 1130224..1131414 Burkholderia ambifaria MC40-6 6179773 YP_001810781.1 CDS BamMC406_4100 NC_010552.1 1131445 1132521 R PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_3625 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1131445..1132521) Burkholderia ambifaria MC40-6 6179774 YP_001810782.1 CDS BamMC406_4101 NC_010552.1 1132549 1133730 R PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_3626 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1132549..1133730) Burkholderia ambifaria MC40-6 6179775 YP_001810783.1 CDS BamMC406_4102 NC_010552.1 1134081 1135130 R PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_3627 glycosyl transferase, family 2; glycosyl transferase family protein complement(1134081..1135130) Burkholderia ambifaria MC40-6 6179660 YP_001810784.1 CDS BamMC406_4103 NC_010552.1 1135459 1136733 D KEGG: bam:Bamb_3628 hypothetical protein; hypothetical protein 1135459..1136733 Burkholderia ambifaria MC40-6 6179661 YP_001810785.1 CDS BamMC406_4104 NC_010552.1 1136761 1138341 R TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_3629 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(1136761..1138341) Burkholderia ambifaria MC40-6 6179662 YP_001810786.1 CDS BamMC406_4105 NC_010552.1 1138338 1138922 R KEGG: bam:Bamb_3630 acyltransferase-like protein; acyltransferase-like protein complement(1138338..1138922) Burkholderia ambifaria MC40-6 6180375 YP_001810787.1 CDS BamMC406_4106 NC_010552.1 1140209 1141600 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bam:Bamb_3632 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1140209..1141600 Burkholderia ambifaria MC40-6 6180376 YP_001810788.1 CDS BamMC406_4107 NC_010552.1 1141647 1144085 R KEGG: bam:Bamb_3633 beta-mannosidase; beta-mannosidase complement(1141647..1144085) Burkholderia ambifaria MC40-6 6180377 YP_001810789.1 CDS BamMC406_4108 NC_010552.1 1144124 1145179 R PFAM: Domain of unknown function DUF1839; KEGG: bam:Bamb_3634 hypothetical protein; hypothetical protein complement(1144124..1145179) Burkholderia ambifaria MC40-6 6180956 YP_001810790.1 CDS BamMC406_4109 NC_010552.1 1145176 1146156 R KEGG: bam:Bamb_3635 hypothetical protein; hypothetical protein complement(1145176..1146156) Burkholderia ambifaria MC40-6 6180957 YP_001810791.1 CDS BamMC406_4110 NC_010552.1 1146153 1147349 R PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_3636 acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase type 2 complement(1146153..1147349) Burkholderia ambifaria MC40-6 6181180 YP_001810792.1 CDS BamMC406_4111 NC_010552.1 1147346 1147597 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(1147346..1147597) Burkholderia ambifaria MC40-6 6181181 YP_001810793.1 CDS BamMC406_4112 NC_010552.1 1147766 1148548 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bam:Bamb_3638 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(1147766..1148548) Burkholderia ambifaria MC40-6 6181182 YP_001810794.1 CDS BamMC406_4113 NC_010552.1 1149464 1150246 D SMART: regulatory protein Crp; KEGG: bam:Bamb_3639 putative transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 1149464..1150246 Burkholderia ambifaria MC40-6 6180874 YP_001810795.1 CDS BamMC406_4114 NC_010552.1 1150249 1151667 D TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bam:Bamb_3640 sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 1150249..1151667 Burkholderia ambifaria MC40-6 6180875 YP_001810796.1 CDS BamMC406_4115 NC_010552.1 1151762 1151947 R KEGG: bpd:BURPS668_0757 hypothetical protein; hypothetical protein complement(1151762..1151947) Burkholderia ambifaria MC40-6 6180876 YP_001810797.1 CDS BamMC406_4116 NC_010552.1 1152291 1152683 D PFAM: zinc finger DksA/TraR C4-type; KEGG: bam:Bamb_3641 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 1152291..1152683 Burkholderia ambifaria MC40-6 6179644 YP_001810798.1 CDS BamMC406_4117 NC_010552.1 1152851 1154629 D PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: bam:Bamb_3642 PHP C-terminal domain protein; phosphotransferase domain-containing protein 1152851..1154629 Burkholderia ambifaria MC40-6 6179645 YP_001810799.1 CDS BamMC406_4118 NC_010552.1 1154643 1155758 R KEGG: bam:Bamb_3643 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; alanine dehydrogenase complement(1154643..1155758) Burkholderia ambifaria MC40-6 6179646 YP_001810800.1 CDS BamMC406_4119 NC_010552.1 1156604 1157341 D KEGG: bam:Bamb_3645 hypothetical protein; gluconate 2-dehydrogenase (acceptor) 1156604..1157341 Burkholderia ambifaria MC40-6 6179172 YP_001810801.1 CDS BamMC406_4120 NC_010552.1 1157341 1159119 D PFAM: glucose-methanol-choline oxidoreductase; KEGG: bam:Bamb_3646 glucose-methanol-choline oxidoreductase; gluconate 2-dehydrogenase (acceptor) 1157341..1159119 Burkholderia ambifaria MC40-6 6179173 YP_001810802.1 CDS BamMC406_4121 NC_010552.1 1159116 1160549 D PFAM: cytochrome c class I; KEGG: bam:Bamb_3647 cytochrome c, class I; gluconate 2-dehydrogenase (acceptor) 1159116..1160549 Burkholderia ambifaria MC40-6 6179174 YP_001810803.1 CDS BamMC406_4122 NC_010552.1 1160763 1162478 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: bam:Bamb_3648 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1160763..1162478 Burkholderia ambifaria MC40-6 6179201 YP_001810804.1 CDS BamMC406_4123 NC_010552.1 1162685 1164577 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: bam:Bamb_3649 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(1162685..1164577) Burkholderia ambifaria MC40-6 6179202 YP_001810805.1 CDS BamMC406_4124 NC_010552.1 1164921 1165268 R KEGG: bam:Bamb_3650 hypothetical protein; hypothetical protein complement(1164921..1165268) Burkholderia ambifaria MC40-6 6179203 YP_001810806.1 CDS BamMC406_4125 NC_010552.1 1165912 1167126 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: bam:Bamb_3651 male sterility C-terminal domain; hypothetical protein 1165912..1167126 Burkholderia ambifaria MC40-6 6179997 YP_001810807.1 CDS BamMC406_4126 NC_010552.1 1167196 1167636 R TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: bam:Bamb_3652 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1167196..1167636) Burkholderia ambifaria MC40-6 6179998 YP_001810808.1 CDS BamMC406_4127 NC_010552.1 1167790 1168479 D KEGG: bam:Bamb_3653 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG1 1167790..1168479 Burkholderia ambifaria MC40-6 6179999 YP_001810809.1 CDS BamMC406_4128 NC_010552.1 1168476 1169240 D KEGG: bam:Bamb_3654 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 1168476..1169240 Burkholderia ambifaria MC40-6 6180109 YP_001810810.1 CDS BamMC406_4129 NC_010552.1 1169263 1170726 D TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3655 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1169263..1170726 Burkholderia ambifaria MC40-6 6180110 YP_001810811.1 CDS BamMC406_4130 NC_010552.1 1170776 1171624 D KEGG: bam:Bamb_3656 3,4-dihydroxyphenylacetate 2,3-dioxygenase; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1170776..1171624 Burkholderia ambifaria MC40-6 6180731 YP_001810812.1 CDS BamMC406_4131 NC_010552.1 1171654 1172046 D PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bam:Bamb_3657 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 1171654..1172046 Burkholderia ambifaria MC40-6 6180732 YP_001810813.1 CDS BamMC406_4132 NC_010552.1 1172066 1172869 D KEGG: bam:Bamb_3658 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1172066..1172869 Burkholderia ambifaria MC40-6 6180733 YP_001810814.1 CDS BamMC406_4133 NC_010552.1 1172882 1173685 D KEGG: bam:Bamb_3659 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1172882..1173685 Burkholderia ambifaria MC40-6 6179548 YP_001810815.1 CDS BamMC406_4134 NC_010552.1 1173848 1174636 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_3660 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1173848..1174636) Burkholderia ambifaria MC40-6 6179549 YP_001810816.1 CDS BamMC406_4135 NC_010552.1 1174731 1174982 D KEGG: bam:Bamb_3661 hypothetical protein; hypothetical protein 1174731..1174982 Burkholderia ambifaria MC40-6 6179550 YP_001810817.1 CDS BamMC406_4136 NC_010552.1 1175029 1175994 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3662 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 1175029..1175994 Burkholderia ambifaria MC40-6 6179720 YP_001810818.1 CDS BamMC406_4137 NC_010552.1 1176056 1177147 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_3663 porin, gram-negative type; porin complement(1176056..1177147) Burkholderia ambifaria MC40-6 6179721 YP_001810819.1 CDS BamMC406_4138 NC_010552.1 1177329 1178396 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_3664 ABC transporter related; ABC transporter-like protein complement(1177329..1178396) Burkholderia ambifaria MC40-6 6179722 YP_001810820.1 CDS BamMC406_4139 NC_010552.1 1178389 1180161 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3665 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1178389..1180161) Burkholderia ambifaria MC40-6 6181527 YP_001810821.1 CDS BamMC406_4140 NC_010552.1 1180262 1181362 R PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_3666 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1180262..1181362) Burkholderia ambifaria MC40-6 6181528 YP_001810822.1 CDS BamMC406_4141 NC_010552.1 1181488 1182162 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_3669 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1181488..1182162 Burkholderia ambifaria MC40-6 6181529 YP_001810823.1 CDS BamMC406_4142 NC_010552.1 1182159 1183550 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: bam:Bamb_3670 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1182159..1183550 Burkholderia ambifaria MC40-6 6180996 YP_001810824.1 CDS BamMC406_4143 NC_010552.1 1183608 1184576 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3671 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(1183608..1184576) Burkholderia ambifaria MC40-6 6180997 YP_001810825.1 CDS BamMC406_4144 NC_010552.1 1184625 1185191 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_3672 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1184625..1185191) Burkholderia ambifaria MC40-6 6180998 YP_001810826.1 CDS BamMC406_4146 NC_010552.1 1186265 1187221 R TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3674 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; aliphatic sulfonate ABC transporter periplasmic ligand-binding protein complement(1186265..1187221) Burkholderia ambifaria MC40-6 6180609 YP_001810827.1 CDS BamMC406_4147 NC_010552.1 1187341 1188393 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_3911 transposase, IS605 OrfB family; IS605 family transposase OrfB 1187341..1188393 Burkholderia ambifaria MC40-6 6179910 YP_001810828.1 CDS BamMC406_4148 NC_010552.1 1188448 1189629 R KEGG: bam:Bamb_3675 cytochrome c, class I; cytochrome c, class I complement(1188448..1189629) Burkholderia ambifaria MC40-6 6179911 YP_001810829.1 CDS BamMC406_4149 NC_010552.1 1189680 1190480 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_3676 ABC transporter related; ABC transporter-like protein complement(1189680..1190480) Burkholderia ambifaria MC40-6 6180942 YP_001810830.1 CDS BamMC406_4150 NC_010552.1 1190474 1191565 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_3677 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1190474..1191565) Burkholderia ambifaria MC40-6 6180943 YP_001810831.1 CDS BamMC406_4151 NC_010552.1 1191570 1192604 R PFAM: NMT1/THI5 like domain protein; KEGG: bam:Bamb_3678 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; NMT1/THI5-like domain-containing protein complement(1191570..1192604) Burkholderia ambifaria MC40-6 6180982 YP_001810832.1 CDS BamMC406_4152 NC_010552.1 1192640 1193485 R PFAM: class II aldolase/adducin family protein; KEGG: bam:Bamb_3679 hypothetical protein; hypothetical protein complement(1192640..1193485) Burkholderia ambifaria MC40-6 6180983 YP_001810833.1 CDS BamMC406_4153 NC_010552.1 1193506 1194591 R PFAM: Luciferase-like monooxygenase; KEGG: bam:Bamb_3680 alkanesulfonate monooxygenase; alkanesulfonate monooxygenase complement(1193506..1194591) Burkholderia ambifaria MC40-6 6180984 YP_001810834.1 CDS BamMC406_4154 NC_010552.1 1194941 1196263 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_3681 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1194941..1196263 Burkholderia ambifaria MC40-6 6180200 YP_001810835.1 CDS BamMC406_4155 NC_010552.1 1196325 1197248 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3682 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1196325..1197248) Burkholderia ambifaria MC40-6 6180201 YP_001810836.1 CDS BamMC406_4156 NC_010552.1 1197323 1197889 D PFAM: cysteine dioxygenase type I; KEGG: bam:Bamb_3683 cysteine dioxygenase type I; cysteine dioxygenase type I 1197323..1197889 Burkholderia ambifaria MC40-6 6180202 YP_001810837.1 CDS BamMC406_4157 NC_010552.1 1197991 1199616 D PFAM: Rhodanese domain protein; KEGG: bam:Bamb_3684 rhodanese domain protein; rhodanese domain-containing protein 1197991..1199616 Burkholderia ambifaria MC40-6 6181467 YP_001810838.1 CDS BamMC406_4158 NC_010552.1 1199768 1200913 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bam:Bamb_3685 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(1199768..1200913) Burkholderia ambifaria MC40-6 6181468 YP_001810839.1 CDS BamMC406_4159 NC_010552.1 1201273 1202337 D PFAM: Squalene/phytoene synthase; KEGG: bam:Bamb_3686 squalene/phytoene synthase; squalene/phytoene synthase 1201273..1202337 Burkholderia ambifaria MC40-6 6181469 YP_001810840.1 CDS BamMC406_4160 NC_010552.1 1202808 1204025 D PFAM: porin Gram-negative type; KEGG: bam:Bamb_3687 porin, gram-negative type; porin 1202808..1204025 Burkholderia ambifaria MC40-6 6180248 YP_001810841.1 CDS BamMC406_4161 NC_010552.1 1204188 1205684 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_3688 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(1204188..1205684) Burkholderia ambifaria MC40-6 6180249 YP_001810842.1 CDS BamMC406_4162 NC_010552.1 1205695 1206849 R PFAM: ABC-2 type transporter; KEGG: bam:Bamb_3689 ABC-2 type transporter; ABC-2 type transporter complement(1205695..1206849) Burkholderia ambifaria MC40-6 6180250 YP_001810843.1 CDS BamMC406_4163 NC_010552.1 1206846 1207817 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_3690 ABC transporter related; ABC transporter-like protein complement(1206846..1207817) Burkholderia ambifaria MC40-6 6181320 YP_001810844.1 CDS BamMC406_4164 NC_010552.1 1207814 1208776 R PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_3691 secretion protein HlyD family protein; secretion protein HlyD family protein complement(1207814..1208776) Burkholderia ambifaria MC40-6 6181321 YP_001810845.1 CDS BamMC406_4165 NC_010552.1 1208773 1209471 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_3692 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1208773..1209471) Burkholderia ambifaria MC40-6 6181322 YP_001810846.1 CDS BamMC406_4166 NC_010552.1 1209816 1210253 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_3693 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase complement(1209816..1210253) Burkholderia ambifaria MC40-6 6179807 YP_001810847.1 CDS BamMC406_4167 NC_010552.1 1210348 1211877 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_3694 transcriptional regulator, GntR family; transcriptional regulator complement(1210348..1211877) Burkholderia ambifaria MC40-6 6179808 YP_001810848.1 CDS BamMC406_4168 NC_010552.1 1212056 1212973 D PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3695 transcriptional regulator, LysR family; MarR family transcriptional regulator 1212056..1212973 Burkholderia ambifaria MC40-6 6179809 YP_001810849.1 CDS BamMC406_4169 NC_010552.1 1213121 1213870 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3696 short chain dehydrogenase; short chain dehydrogenase 1213121..1213870 Burkholderia ambifaria MC40-6 6181403 YP_001810850.1 CDS BamMC406_4170 NC_010552.1 1213936 1215636 R KEGG: bam:Bamb_3697 levanase; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; levanase complement(1213936..1215636) Burkholderia ambifaria MC40-6 6181404 YP_001810851.1 CDS BamMC406_4171 NC_010552.1 1215724 1217304 R PFAM: glycoside hydrolase family 68; KEGG: bam:Bamb_3698 levansucrase; levansucrase complement(1215724..1217304) Burkholderia ambifaria MC40-6 6179528 YP_001810852.1 CDS BamMC406_4172 NC_010552.1 1217475 1218509 D PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bam:Bamb_3699 transcriptional regulator, LacI family; LacI family transcription regulator 1217475..1218509 Burkholderia ambifaria MC40-6 6179529 YP_001810853.1 CDS BamMC406_4173 NC_010552.1 1218914 1221268 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bvi:Bcep1808_7505 rhs element Vgr protein; type VI secretion system Vgr family protein 1218914..1221268 Burkholderia ambifaria MC40-6 6179530 YP_001810854.1 CDS BamMC406_4174 NC_010552.1 1221265 1221858 D KEGG: rso:RS03738 putative VGR-related protein; putative VGR-like protein 1221265..1221858 Burkholderia ambifaria MC40-6 6179259 YP_001810855.1 CDS BamMC406_4175 NC_010552.1 1221862 1223868 D PFAM: phospholipase D/Transphosphatidylase; KEGG: rso:RS03737 probable phospholipase protein; phospholipase D/transphosphatidylase 1221862..1223868 Burkholderia ambifaria MC40-6 6179260 YP_001810856.1 CDS BamMC406_4176 NC_010552.1 1223941 1225179 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: rso:RS03736 probable lipoprotein; Sel1 domain-containing protein 1223941..1225179 Burkholderia ambifaria MC40-6 6179261 YP_001810857.1 CDS BamMC406_4177 NC_010552.1 1225202 1225489 D KEGG: bvi:Bcep1808_4079 hypothetical protein; hypothetical protein 1225202..1225489 Burkholderia ambifaria MC40-6 6180576 YP_001810858.1 CDS BamMC406_4178 NC_010552.1 1225899 1226585 D PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_3700 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 1225899..1226585 Burkholderia ambifaria MC40-6 6180577 YP_001810859.1 CDS BamMC406_4179 NC_010552.1 1226720 1227829 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bam:Bamb_3701 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 1226720..1227829 Burkholderia ambifaria MC40-6 6180578 YP_001810860.1 CDS BamMC406_4180 NC_010552.1 1227991 1229061 D PFAM: protein of unknown function UPF0118; KEGG: bam:Bamb_3702 protein of unknown function UPF0118; hypothetical protein 1227991..1229061 Burkholderia ambifaria MC40-6 6179314 YP_001810861.1 CDS BamMC406_4181 NC_010552.1 1229261 1229659 D KEGG: bam:Bamb_3703 hypothetical protein; hypothetical protein 1229261..1229659 Burkholderia ambifaria MC40-6 6179315 YP_001810862.1 CDS BamMC406_4182 NC_010552.1 1229693 1230487 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_3704 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1229693..1230487) Burkholderia ambifaria MC40-6 6179316 YP_001810863.1 CDS BamMC406_4183 NC_010552.1 1230649 1231497 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bam:Bamb_3705 transcriptional regulator, AraC family; AraC family transcriptional regulator 1230649..1231497 Burkholderia ambifaria MC40-6 6180378 YP_001810864.1 CDS BamMC406_4184 NC_010552.1 1231588 1232193 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_3706 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1231588..1232193) Burkholderia ambifaria MC40-6 6180379 YP_001810865.1 CDS BamMC406_4185 NC_010552.1 1232289 1233737 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_3707 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase complement(1232289..1233737) Burkholderia ambifaria MC40-6 6180380 YP_001810866.1 CDS BamMC406_4186 NC_010552.1 1233734 1234429 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_3708 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator complement(1233734..1234429) Burkholderia ambifaria MC40-6 6179459 YP_001810867.1 CDS BamMC406_4187 NC_010552.1 1234453 1235967 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_3709 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(1234453..1235967) Burkholderia ambifaria MC40-6 6179460 YP_001810868.1 CDS BamMC406_4188 NC_010552.1 1235964 1237196 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_3710 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1235964..1237196) Burkholderia ambifaria MC40-6 6179461 YP_001810869.1 CDS BamMC406_4189 NC_010552.1 1237236 1240403 R PFAM: acriflavin resistance protein; KEGG: bam:Bamb_3711 acriflavin resistance protein; acriflavin resistance protein complement(1237236..1240403) Burkholderia ambifaria MC40-6 6180162 YP_001810870.1 CDS BamMC406_4190 NC_010552.1 1240631 1241419 R PFAM: cyclic nucleotide-binding; KEGG: bam:Bamb_3712 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(1240631..1241419) Burkholderia ambifaria MC40-6 6180163 YP_001810871.1 CDS BamMC406_4191 NC_010552.1 1241636 1243288 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 1241636..1243288 Burkholderia ambifaria MC40-6 6180164 YP_001810872.1 CDS BamMC406_4192 NC_010552.1 1243332 1245314 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_3714 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1243332..1245314) Burkholderia ambifaria MC40-6 6179347 YP_001810873.1 CDS BamMC406_4193 NC_010552.1 1245455 1245886 R KEGG: bam:Bamb_3715 membrane protein-like protein; hypothetical protein complement(1245455..1245886) Burkholderia ambifaria MC40-6 6179348 YP_001810874.1 CDS BamMC406_4194 NC_010552.1 1245943 1246590 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_3717 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1245943..1246590) Burkholderia ambifaria MC40-6 6179349 YP_001810875.1 CDS BamMC406_4195 NC_010552.1 1246872 1247354 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_3718 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1246872..1247354 Burkholderia ambifaria MC40-6 6179559 YP_001810876.1 CDS BamMC406_4196 NC_010552.1 1248084 1249814 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_3720 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1248084..1249814) Burkholderia ambifaria MC40-6 6179560 YP_001810877.1 CDS BamMC406_4197 NC_010552.1 1249854 1250873 D PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_3721 beta-lactamase domain protein; beta-lactamase domain-containing protein 1249854..1250873 Burkholderia ambifaria MC40-6 6179561 YP_001810878.1 CDS BamMC406_4198 NC_010552.1 1251056 1252435 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3722 major facilitator superfamily MFS_1; major facilitator transporter 1251056..1252435 Burkholderia ambifaria MC40-6 6180568 YP_001810879.1 CDS BamMC406_4199 NC_010552.1 1252538 1253338 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3723 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1252538..1253338) Burkholderia ambifaria MC40-6 6180569 YP_001810880.1 CDS BamMC406_4200 NC_010552.1 1253480 1254439 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_3724 transcriptional regulator, AraC family; AraC family transcriptional regulator 1253480..1254439 Burkholderia ambifaria MC40-6 6179222 YP_001810881.1 CDS BamMC406_4201 NC_010552.1 1254450 1254941 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_3725 cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein complement(1254450..1254941) Burkholderia ambifaria MC40-6 6179223 YP_001810882.1 CDS BamMC406_4202 NC_010552.1 1255147 1256121 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3728 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1255147..1256121) Burkholderia ambifaria MC40-6 6179224 YP_001810883.1 CDS BamMC406_4203 NC_010552.1 1256227 1257585 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 1256227..1257585 Burkholderia ambifaria MC40-6 6180418 YP_001810884.1 CDS BamMC406_4204 NC_010552.1 1257634 1259151 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3730 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1257634..1259151 Burkholderia ambifaria MC40-6 6180419 YP_001810885.1 CDS BamMC406_4205 NC_010552.1 1259314 1259688 R PFAM: Secreted repeat of unknown function; KEGG: bam:Bamb_3731 secreted repeat of unknown function; hypothetical protein complement(1259314..1259688) Burkholderia ambifaria MC40-6 6180420 YP_001810886.1 CDS BamMC406_4206 NC_010552.1 1259995 1260927 R PFAM: Auxin Efflux Carrier; KEGG: bam:Bamb_3732 auxin efflux carrier; auxin efflux carrier complement(1259995..1260927) Burkholderia ambifaria MC40-6 6180562 YP_001810887.1 CDS BamMC406_4207 NC_010552.1 1261102 1262052 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3733 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1261102..1262052) Burkholderia ambifaria MC40-6 6180563 YP_001810888.1 CDS BamMC406_4208 NC_010552.1 1262277 1262654 D KEGG: bam:Bamb_3734 hypothetical protein; hypothetical protein 1262277..1262654 Burkholderia ambifaria MC40-6 6180564 YP_001810889.1 CDS BamMC406_4209 NC_010552.1 1262673 1263473 R PFAM: regulatory protein LuxR; KEGG: bam:Bamb_3735 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1262673..1263473) Burkholderia ambifaria MC40-6 6180023 YP_001810890.1 CDS BamMC406_4210 NC_010552.1 1263657 1265060 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_3736 amino acid permease-associated region; amino acid permease-associated protein 1263657..1265060 Burkholderia ambifaria MC40-6 6180024 YP_001810891.1 CDS BamMC406_4211 NC_010552.1 1265125 1266234 D PFAM: peptidase S58 DmpA; KEGG: bam:Bamb_3737 peptidase S58, DmpA; peptidase S58 DmpA 1265125..1266234 Burkholderia ambifaria MC40-6 6180025 YP_001810892.1 CDS BamMC406_4212 NC_010552.1 1266394 1266606 R KEGG: bam:Bamb_3738 hypothetical protein; hypothetical protein complement(1266394..1266606) Burkholderia ambifaria MC40-6 6179847 YP_001810893.1 CDS BamMC406_4213 NC_010552.1 1266764 1268944 R PFAM: Fusaric acid resistance protein conserved region; KEGG: bam:Bamb_3739 fusaric acid resistance protein conserved region; fusaric acid resistance protein complement(1266764..1268944) Burkholderia ambifaria MC40-6 6179848 YP_001810894.1 CDS BamMC406_4214 NC_010552.1 1269133 1270080 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3740 transcriptional regulator, LysR family; LysR family transcriptional regulator 1269133..1270080 Burkholderia ambifaria MC40-6 6179849 YP_001810895.1 CDS BamMC406_4215 NC_010552.1 1270227 1270529 R KEGG: bam:Bamb_3741 hypothetical protein; hypothetical protein complement(1270227..1270529) Burkholderia ambifaria MC40-6 6179574 YP_001810896.1 CDS BamMC406_4216 NC_010552.1 1270756 1271898 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_3742 porin, gram-negative type; porin complement(1270756..1271898) Burkholderia ambifaria MC40-6 6179575 YP_001810897.1 CDS BamMC406_4217 NC_010552.1 1272018 1273070 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_4247 transposase, IS605 OrfB family; IS605 family transposase OrfB 1272018..1273070 Burkholderia ambifaria MC40-6 6179576 YP_001810898.1 CDS BamMC406_4218 NC_010552.1 1273395 1273859 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_3744 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1273395..1273859 Burkholderia ambifaria MC40-6 6181411 YP_001810899.1 CDS BamMC406_4219 NC_010552.1 1273932 1275173 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bam:Bamb_3745 N-isopropylammelide isopropylaminohydrolase; N-isopropylammelide isopropylaminohydrolase 1273932..1275173 Burkholderia ambifaria MC40-6 6181412 YP_001810900.1 CDS BamMC406_4220 NC_010552.1 1275402 1276679 D PFAM: Chloride channel core; KEGG: bam:Bamb_3746 Cl-channel, voltage-gated family protein; chloride channel core protein 1275402..1276679 Burkholderia ambifaria MC40-6 6181413 YP_001810901.1 CDS BamMC406_4221 NC_010552.1 1276923 1278245 D PFAM: short chain fatty acid transporter; KEGG: bam:Bamb_3747 hypothetical protein; short chain fatty acid transporter 1276923..1278245 Burkholderia ambifaria MC40-6 6179337 YP_001810902.1 CDS BamMC406_4222 NC_010552.1 1278312 1279640 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3748 major facilitator superfamily MFS_1; major facilitator transporter complement(1278312..1279640) Burkholderia ambifaria MC40-6 6179338 YP_001810903.1 CDS BamMC406_4223 NC_010552.1 1279874 1280806 R PFAM: protein of unknown function DUF849; KEGG: bam:Bamb_3749 protein of unknown function DUF849; hypothetical protein complement(1279874..1280806) Burkholderia ambifaria MC40-6 6179339 YP_001810904.1 CDS BamMC406_4224 NC_010552.1 1280842 1281639 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3750 short chain dehydrogenase; short chain dehydrogenase complement(1280842..1281639) Burkholderia ambifaria MC40-6 6179189 YP_001810905.1 CDS BamMC406_4225 NC_010552.1 1281713 1282423 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_3751 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1281713..1282423) Burkholderia ambifaria MC40-6 6179190 YP_001810906.1 CDS BamMC406_4226 NC_010552.1 1282825 1283064 D KEGG: bam:Bamb_3752 transcriptional regulator, XRE family; XRE family plasmid maintenance system antidote protein 1282825..1283064 Burkholderia ambifaria MC40-6 6179191 YP_001810907.1 CDS BamMC406_4227 NC_010552.1 1283057 1284316 D PFAM: HipA domain protein; KEGG: bam:Bamb_3753 HipA domain protein; HipA domain-containing protein 1283057..1284316 Burkholderia ambifaria MC40-6 6181109 YP_001810908.1 CDS BamMC406_4228 NC_010552.1 1284332 1285681 R PFAM: Di-haem cytochrome c peroxidase; KEGG: bam:Bamb_3754 di-haem cytochrome c peroxidase; di-heme cytochrome c peroxidase complement(1284332..1285681) Burkholderia ambifaria MC40-6 6181110 YP_001810909.1 CDS BamMC406_4229 NC_010552.1 1285869 1287542 R PFAM: phosphoesterase; KEGG: bam:Bamb_3755 phospholipase C; phospholipase C complement(1285869..1287542) Burkholderia ambifaria MC40-6 6179827 YP_001810910.1 CDS BamMC406_4230 NC_010552.1 1288018 1288773 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_3756 protein of unknown function DUF6, transmembrane; hypothetical protein 1288018..1288773 Burkholderia ambifaria MC40-6 6179828 YP_001810911.1 CDS BamMC406_4231 NC_010552.1 1288819 1289292 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_3757 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1288819..1289292) Burkholderia ambifaria MC40-6 6179829 YP_001810912.1 CDS BamMC406_4232 NC_010552.1 1289612 1290997 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_3758 amino acid permease-associated region; amino acid permease-associated protein 1289612..1290997 Burkholderia ambifaria MC40-6 6181234 YP_001810913.1 CDS BamMC406_4233 NC_010552.1 1291041 1292243 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1291041..1292243 Burkholderia ambifaria MC40-6 6181235 YP_001810914.1 CDS BamMC406_4234 NC_010552.1 1292374 1292772 D KEGG: bam:Bamb_3760 hypothetical protein; hypothetical protein 1292374..1292772 Burkholderia ambifaria MC40-6 6181236 YP_001810915.1 CDS BamMC406_4235 NC_010552.1 1292905 1293183 D KEGG: bam:Bamb_3761 hypothetical protein; hypothetical protein 1292905..1293183 Burkholderia ambifaria MC40-6 6181280 YP_001810916.1 CDS BamMC406_4236 NC_010552.1 1293200 1293439 D KEGG: bam:Bamb_3762 hypothetical protein; hypothetical protein 1293200..1293439 Burkholderia ambifaria MC40-6 6181281 YP_001810917.1 CDS BamMC406_4237 NC_010552.1 1293582 1293935 D KEGG: bam:Bamb_3763 hypothetical protein; hypothetical protein 1293582..1293935 Burkholderia ambifaria MC40-6 6181282 YP_001810918.1 CDS BamMC406_4238 NC_010552.1 1293957 1294730 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bam:Bamb_3764 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(1293957..1294730) Burkholderia ambifaria MC40-6 6180372 YP_001810919.1 CDS BamMC406_4239 NC_010552.1 1294748 1295155 R PFAM: response regulator receiver; KEGG: bam:Bamb_3765 response regulator receiver protein; response regulator receiver protein complement(1294748..1295155) Burkholderia ambifaria MC40-6 6180373 YP_001810920.1 CDS BamMC406_4240 NC_010552.1 1295335 1296270 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(1295335..1296270) Burkholderia ambifaria MC40-6 6180374 YP_001810921.1 CDS BamMC406_4241 NC_010552.1 1296533 1297270 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_3767 regulatory protein GntR, HTH; regulatory protein GntR 1296533..1297270 Burkholderia ambifaria MC40-6 6180015 YP_001810922.1 CDS BamMC406_4242 NC_010552.1 1297392 1298513 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_3768 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1297392..1298513 Burkholderia ambifaria MC40-6 6180016 YP_001810923.1 CDS BamMC406_4243 NC_010552.1 1298568 1299575 D PFAM: proline racemase; KEGG: bam:Bamb_3769 proline racemase; proline racemase 1298568..1299575 Burkholderia ambifaria MC40-6 6180017 YP_001810924.1 CDS BamMC406_4244 NC_010552.1 1299782 1302355 D PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bam:Bamb_3770 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 1299782..1302355 Burkholderia ambifaria MC40-6 6180283 YP_001810925.1 CDS BamMC406_4245 NC_010552.1 1302434 1303309 D PFAM: type IV pilus assembly PilZ; KEGG: bam:Bamb_3771 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1302434..1303309 Burkholderia ambifaria MC40-6 6180284 YP_001810926.1 CDS BamMC406_4246 NC_010552.1 1303577 1303906 D KEGG: bam:Bamb_3772 hypothetical protein; hypothetical protein 1303577..1303906 Burkholderia ambifaria MC40-6 6180285 YP_001810927.1 CDS BamMC406_4247 NC_010552.1 1304176 1304580 D PFAM: protein of unknown function DUF1311; KEGG: bam:Bamb_3773 protein of unknown function DUF1311; hypothetical protein 1304176..1304580 Burkholderia ambifaria MC40-6 6180782 YP_001810928.1 CDS BamMC406_4248 NC_010552.1 1304660 1305307 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_3774 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1304660..1305307) Burkholderia ambifaria MC40-6 6180783 YP_001810929.1 CDS BamMC406_4249 NC_010552.1 1305304 1307358 R KEGG: bam:Bamb_3775 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(1305304..1307358) Burkholderia ambifaria MC40-6 6180784 YP_001810930.1 CDS BamMC406_4250 NC_010552.1 1307738 1308211 D PFAM: UspA domain protein; KEGG: bam:Bamb_3776 UspA domain protein; UspA domain-containing protein 1307738..1308211 Burkholderia ambifaria MC40-6 6180785 YP_001810931.1 CDS BamMC406_4251 NC_010552.1 1308561 1309067 D PFAM: protein of unknown function DUF985; KEGG: bam:Bamb_3777 protein of unknown function DUF985; hypothetical protein 1308561..1309067 Burkholderia ambifaria MC40-6 6180786 YP_001810932.1 CDS BamMC406_4252 NC_010552.1 1309234 1310262 D SMART: Rhodanese domain protein; KEGG: bam:Bamb_3778 rhodanese domain protein; rhodanese domain-containing protein 1309234..1310262 Burkholderia ambifaria MC40-6 6180787 YP_001810933.1 CDS BamMC406_4253 NC_010552.1 1310608 1311552 D PFAM: UspA domain protein; KEGG: bam:Bamb_3786 UspA domain protein; UspA domain-containing protein 1310608..1311552 Burkholderia ambifaria MC40-6 6181061 YP_001810934.1 CDS BamMC406_4254 NC_010552.1 1312083 1312493 R KEGG: bam:Bamb_3787 hypothetical protein; hypothetical protein complement(1312083..1312493) Burkholderia ambifaria MC40-6 6181062 YP_001810935.1 CDS BamMC406_4255 NC_010552.1 1313088 1313345 D KEGG: bam:Bamb_3789 hypothetical protein; hypothetical protein 1313088..1313345 Burkholderia ambifaria MC40-6 6181063 YP_001810936.1 CDS BamMC406_4256 NC_010552.1 1313584 1315383 D PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_3790 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 1313584..1315383 Burkholderia ambifaria MC40-6 6181131 YP_001810937.1 CDS BamMC406_4257 NC_010552.1 1315426 1316583 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_3791 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(1315426..1316583) Burkholderia ambifaria MC40-6 6181132 YP_001810938.1 CDS BamMC406_4258 NC_010552.1 1316837 1318828 D KEGG: bam:Bamb_3793 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 1316837..1318828 Burkholderia ambifaria MC40-6 6179505 YP_001810939.1 CDS BamMC406_4259 NC_010552.1 1318954 1319598 D KEGG: bam:Bamb_3794 hypothetical protein; hypothetical protein 1318954..1319598 Burkholderia ambifaria MC40-6 6179506 YP_001810940.1 CDS BamMC406_4260 NC_010552.1 1319627 1320127 R PFAM: PRC-barrel domain protein; KEGG: bam:Bamb_3795 PRC-barrel domain protein; PRC-barrel domain-containing protein complement(1319627..1320127) Burkholderia ambifaria MC40-6 6179507 YP_001810941.1 CDS BamMC406_4261 NC_010552.1 1320195 1320626 R PFAM: CBS domain containing protein; KEGG: bam:Bamb_3796 CBS domain containing membrane protein; CBS domain-containing protein complement(1320195..1320626) Burkholderia ambifaria MC40-6 6180100 YP_001810942.1 CDS BamMC406_4262 NC_010552.1 1320782 1320901 R KEGG: bpd:BURPS668_A3136 hypothetical protein; hypothetical protein complement(1320782..1320901) Burkholderia ambifaria MC40-6 6180101 YP_001810943.1 CDS BamMC406_4263 NC_010552.1 1320967 1321215 R KEGG: bam:Bamb_3797 hypothetical protein; hypothetical protein complement(1320967..1321215) Burkholderia ambifaria MC40-6 6180102 YP_001810944.1 CDS BamMC406_4264 NC_010552.1 1321354 1321599 R hypothetical protein complement(1321354..1321599) Burkholderia ambifaria MC40-6 6180859 YP_001810945.1 CDS BamMC406_4265 NC_010552.1 1321792 1322103 D KEGG: bam:Bamb_3798 hypothetical protein; hypothetical protein 1321792..1322103 Burkholderia ambifaria MC40-6 6180860 YP_001810946.1 CDS BamMC406_4266 NC_010552.1 1322311 1323189 D PFAM: MltA-interacting MipA family protein; KEGG: bam:Bamb_3799 MltA-interacting MipA family protein; MltA-interacting MipA family protein 1322311..1323189 Burkholderia ambifaria MC40-6 6180861 YP_001810947.1 CDS BamMC406_4267 NC_010552.1 1323252 1324982 D PFAM: VRR-NUC domain protein; KEGG: bam:Bamb_3800 hypothetical protein; VRR-NUC domain-containing protein 1323252..1324982 Burkholderia ambifaria MC40-6 6179991 YP_001810948.1 CDS BamMC406_4268 NC_010552.1 1324979 1327279 D SMART: helicase c2; KEGG: bam:Bamb_3801 helicase C2; helicase c2 1324979..1327279 Burkholderia ambifaria MC40-6 6179992 YP_001810949.1 CDS BamMC406_4269 NC_010552.1 1327319 1328089 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_3802 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1327319..1328089) Burkholderia ambifaria MC40-6 6179993 YP_001810950.1 CDS BamMC406_4270 NC_010552.1 1328247 1328480 D PFAM: SpoVT/AbrB domain protein; KEGG: net:Neut_0070 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin, MazE 1328247..1328480 Burkholderia ambifaria MC40-6 6180333 YP_001810951.1 CDS BamMC406_4271 NC_010552.1 1328467 1328880 D PFAM: PilT protein domain protein; KEGG: xac:XAC2187 hypothetical protein; PilT domain-containing protein 1328467..1328880 Burkholderia ambifaria MC40-6 6180334 YP_001810952.1 CDS BamMC406_4272 NC_010552.1 1329095 1330396 R PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bam:Bamb_3804 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1329095..1330396) Burkholderia ambifaria MC40-6 6180335 YP_001810953.1 CDS BamMC406_4273 NC_010552.1 1330607 1331914 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_3805 shikimate transporter; shikimate transporter complement(1330607..1331914) Burkholderia ambifaria MC40-6 6179812 YP_001810954.1 CDS BamMC406_4274 NC_010552.1 1332268 1333395 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_3806 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1332268..1333395 Burkholderia ambifaria MC40-6 6179813 YP_001810955.1 CDS BamMC406_4275 NC_010552.1 1333544 1334878 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bam:Bamb_3807 HipA domain protein; HipA domain-containing protein complement(1333544..1334878) Burkholderia ambifaria MC40-6 6179814 YP_001810956.1 CDS BamMC406_4276 NC_010552.1 1334881 1335318 R PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_3808 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1334881..1335318) Burkholderia ambifaria MC40-6 6179815 YP_001810957.1 CDS BamMC406_4278 NC_010552.1 1335744 1336409 R PFAM: cation efflux protein; KEGG: bam:Bamb_3810 cation efflux protein; cation efflux protein complement(1335744..1336409) Burkholderia ambifaria MC40-6 6180613 YP_001810958.1 CDS BamMC406_4279 NC_010552.1 1336773 1337762 D TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3811 alcohol dehydrogenase GroES domain protein; zinc-binding alcohol dehydrogenase family protein 1336773..1337762 Burkholderia ambifaria MC40-6 6179817 YP_001810959.1 CDS BamMC406_4280 NC_010552.1 1337790 1338563 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bam:Bamb_3812 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(1337790..1338563) Burkholderia ambifaria MC40-6 6180058 YP_001810960.1 CDS BamMC406_4281 NC_010552.1 1338983 1339453 D PFAM: UspA domain protein; KEGG: bam:Bamb_3813 UspA domain protein; UspA domain-containing protein 1338983..1339453 Burkholderia ambifaria MC40-6 6180059 YP_001810961.1 CDS BamMC406_4282 NC_010552.1 1339505 1340338 R PFAM: UspA domain protein; KEGG: bam:Bamb_3814 UspA domain protein; UspA domain-containing protein complement(1339505..1340338) Burkholderia ambifaria MC40-6 6180060 YP_001810962.1 CDS BamMC406_4283 NC_010552.1 1340335 1340826 R PFAM: UspA domain protein; KEGG: bam:Bamb_3815 UspA domain protein; UspA domain-containing protein complement(1340335..1340826) Burkholderia ambifaria MC40-6 6179383 YP_001810963.1 CDS BamMC406_4284 NC_010552.1 1340896 1342095 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: bam:Bamb_3816 acetate kinase; acetate kinase complement(1340896..1342095) Burkholderia ambifaria MC40-6 6179384 YP_001810964.1 CDS BamMC406_4285 NC_010552.1 1342104 1342943 R PFAM: UspA domain protein; KEGG: bam:Bamb_3817 UspA domain protein; UspA domain-containing protein complement(1342104..1342943) Burkholderia ambifaria MC40-6 6179385 YP_001810965.1 CDS BamMC406_4286 NC_010552.1 1343134 1343673 D KEGG: bam:Bamb_3818 hypothetical protein; hypothetical protein 1343134..1343673 Burkholderia ambifaria MC40-6 6179706 YP_001810966.1 CDS BamMC406_4287 NC_010552.1 1343663 1344409 D TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3819 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 1343663..1344409 Burkholderia ambifaria MC40-6 6179707 YP_001810967.1 CDS BamMC406_4288 NC_010552.1 1344490 1346310 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bam:Bamb_3820 poly-beta-hydroxybutyrate polymerase domain protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 1344490..1346310 Burkholderia ambifaria MC40-6 6180556 YP_001810968.1 CDS BamMC406_4289 NC_010552.1 1346307 1347329 D PFAM: phosphate acetyl/butaryl transferase; KEGG: bam:Bamb_3821 phosphate butyryltransferase; phosphate butyryltransferase 1346307..1347329 Burkholderia ambifaria MC40-6 6180557 YP_001810969.1 CDS BamMC406_4290 NC_010552.1 1347335 1348375 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3822 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 1347335..1348375 Burkholderia ambifaria MC40-6 6180558 YP_001810970.1 CDS BamMC406_4291 NC_010552.1 1348467 1348652 R KEGG: bam:Bamb_3823 hypothetical protein; hypothetical protein complement(1348467..1348652) Burkholderia ambifaria MC40-6 6179698 YP_001810971.1 CDS BamMC406_4292 NC_010552.1 1349002 1349622 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_3824 transcriptional regulator, TetR family; TetR family transcriptional regulator 1349002..1349622 Burkholderia ambifaria MC40-6 6179699 YP_001810972.1 CDS BamMC406_4293 NC_010552.1 1349825 1350883 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bam:Bamb_3825 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 1349825..1350883 Burkholderia ambifaria MC40-6 6179700 YP_001810973.1 CDS BamMC406_4294 NC_010552.1 1350966 1351265 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bam:Bamb_3826 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1350966..1351265 Burkholderia ambifaria MC40-6 6179888 YP_001810974.1 CDS BamMC406_4295 NC_010552.1 1351397 1351852 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_3827 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1351397..1351852 Burkholderia ambifaria MC40-6 6179889 YP_001810975.1 CDS BamMC406_4296 NC_010552.1 1351854 1354073 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_3828 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1351854..1354073 Burkholderia ambifaria MC40-6 6179890 YP_001810976.1 CDS BamMC406_4297 NC_010552.1 1354089 1355414 D PFAM: cytochrome c class I; KEGG: bam:Bamb_3829 cytochrome c, class I; gluconate 2-dehydrogenase (acceptor) 1354089..1355414 Burkholderia ambifaria MC40-6 6180277 YP_001810977.1 CDS BamMC406_4298 NC_010552.1 1355576 1357021 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3830 succinate-semialdehyde dehydrogenase (NAD(P)(+)); aldehyde dehydrogenase 1355576..1357021 Burkholderia ambifaria MC40-6 6180278 YP_001810978.1 CDS BamMC406_4299 NC_010552.1 1357450 1358205 D KEGG: psb:Psyr_0738 type III effector protein AvrRpm1; hypothetical protein 1357450..1358205 Burkholderia ambifaria MC40-6 6180279 YP_001810979.1 CDS BamMC406_4300 NC_010552.1 1358621 1360027 D PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6221 integrase, catalytic region; integrase catalytic subunit 1358621..1360027 Burkholderia ambifaria MC40-6 6179906 YP_001810980.1 CDS BamMC406_4301 NC_010552.1 1360434 1362131 D PFAM: peptidase M4 thermolysin; Propeptide peptidase M4 and M36; Peptidase M4 thermolysin; KEGG: bam:Bamb_3836 propeptide, peptidase M4 and M36; peptidase M4 thermolysin 1360434..1362131 Burkholderia ambifaria MC40-6 6179907 YP_001810981.1 CDS BamMC406_4302 NC_010552.1 1362333 1362905 R PFAM: PEBP family protein; KEGG: bam:Bamb_3837 YbhB and YbcL; PEBP family protein complement(1362333..1362905) Burkholderia ambifaria MC40-6 6179908 YP_001810982.1 CDS BamMC406_4304 NC_010552.1 1364625 1365287 R KEGG: bam:Bamb_3843 hypothetical protein; hypothetical protein complement(1364625..1365287) Burkholderia ambifaria MC40-6 6180614 YP_001810983.1 CDS BamMC406_4305 NC_010552.1 1365672 1366385 R KEGG: bam:Bamb_3844 hypothetical protein; hypothetical protein complement(1365672..1366385) Burkholderia ambifaria MC40-6 6180166 YP_001810984.1 CDS BamMC406_4306 NC_010552.1 1366530 1378901 R PFAM: Peptidoglycan-binding LysM; KEGG: bam:Bamb_3846 peptidoglycan-binding LysM; FHA domain-containing protein complement(1366530..1378901) Burkholderia ambifaria MC40-6 6180167 YP_001810985.1 CDS BamMC406_4307 NC_010552.1 1379558 1380814 D PFAM: porin Gram-negative type; KEGG: bam:Bamb_3848 porin, gram-negative type; porin 1379558..1380814 Burkholderia ambifaria MC40-6 6180182 YP_001810986.1 CDS BamMC406_4308 NC_010552.1 1381171 1382223 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_6181 transposase, IS605 OrfB family; IS605 family transposase OrfB complement(1381171..1382223) Burkholderia ambifaria MC40-6 6180183 YP_001810987.1 CDS BamMC406_4309 NC_010552.1 1382316 1382807 D TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_3849 OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 1382316..1382807 Burkholderia ambifaria MC40-6 6180184 YP_001810988.1 CDS BamMC406_4310 NC_010552.1 1382993 1383472 R KEGG: bam:Bamb_3850 hypothetical protein; hypothetical protein complement(1382993..1383472) Burkholderia ambifaria MC40-6 6179181 YP_001810989.1 CDS BamMC406_4311 NC_010552.1 1383689 1383862 D KEGG: bmu:Bmul_4202 hypothetical protein; hypothetical protein 1383689..1383862 Burkholderia ambifaria MC40-6 6179182 YP_001810990.1 CDS BamMC406_4312 NC_010552.1 1383945 1385207 R PFAM: cytochrome c class I; KEGG: bam:Bamb_3851 cytochrome c, class I; gluconate 2-dehydrogenase (acceptor) complement(1383945..1385207) Burkholderia ambifaria MC40-6 6179183 YP_001810991.1 CDS BamMC406_4313 NC_010552.1 1385204 1385908 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_3852 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(1385204..1385908) Burkholderia ambifaria MC40-6 6179268 YP_001810992.1 CDS BamMC406_4314 NC_010552.1 1385905 1388781 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_3853 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(1385905..1388781) Burkholderia ambifaria MC40-6 6179269 YP_001810993.1 CDS BamMC406_4315 NC_010552.1 1389174 1390724 D KEGG: bam:Bamb_3854 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1389174..1390724 Burkholderia ambifaria MC40-6 6179270 YP_001810994.1 CDS BamMC406_4316 NC_010552.1 1390997 1391272 D KEGG: bam:Bamb_3855 hypothetical protein; hypothetical protein 1390997..1391272 Burkholderia ambifaria MC40-6 6181401 YP_001810995.1 CDS BamMC406_4317 NC_010552.1 1391519 1392559 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bam:Bamb_3856 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 1391519..1392559 Burkholderia ambifaria MC40-6 6181402 YP_001810996.1 CDS rdgC NC_010552.1 1392847 1393767 D Required for efficient pilin antigenic variation; recombination associated protein 1392847..1393767 Burkholderia ambifaria MC40-6 6179410 YP_001810997.1 CDS BamMC406_4319 NC_010552.1 1394076 1394636 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_3859 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 1394076..1394636 Burkholderia ambifaria MC40-6 6179411 YP_001810998.1 CDS BamMC406_4320 NC_010552.1 1394702 1395655 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3860 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1394702..1395655 Burkholderia ambifaria MC40-6 6179412 YP_001810999.1 CDS BamMC406_4321 NC_010552.1 1395695 1396744 D PFAM: Luciferase-like monooxygenase; KEGG: bam:Bamb_3861 luciferase family protein; luciferase-like monooxygenase 1395695..1396744 Burkholderia ambifaria MC40-6 6180642 YP_001811000.1 CDS BamMC406_4322 NC_010552.1 1396785 1398110 D KEGG: bam:Bamb_3862 flavin-dependent oxidoreductase; flavin-dependent oxidoreductase 1396785..1398110 Burkholderia ambifaria MC40-6 6180643 YP_001811001.1 CDS BamMC406_4323 NC_010552.1 1398170 1399954 D KEGG: bam:Bamb_3863 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; SMART: AAA ATPase; polar amino acid ABC transporter inner membrane subunit 1398170..1399954 Burkholderia ambifaria MC40-6 6180644 YP_001811002.1 CDS BamMC406_4324 NC_010552.1 1399989 1400930 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3864 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1399989..1400930 Burkholderia ambifaria MC40-6 6180877 YP_001811003.1 CDS BamMC406_4325 NC_010552.1 1401012 1402127 R PFAM: Luciferase-like monooxygenase; KEGG: bch:Bcen2424_4433 alkanesulfonate monooxygenase; alkanesulfonate monooxygenase complement(1401012..1402127) Burkholderia ambifaria MC40-6 6180878 YP_001811004.1 CDS BamMC406_4326 NC_010552.1 1402180 1403145 R TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bur:Bcep18194_B1528 ABC transporter, substrate-binding protein, aliphatic sulphonates; aliphatic sulfonate ABC transporter periplasmic ligand-binding protein complement(1402180..1403145) Burkholderia ambifaria MC40-6 6180879 YP_001811005.1 CDS BamMC406_4327 NC_010552.1 1403515 1404432 D KEGG: bam:Bamb_3867 alpha/beta hydrolase-like protein; alpha/beta hydrolase-like protein 1403515..1404432 Burkholderia ambifaria MC40-6 6181286 YP_001811006.1 CDS BamMC406_4328 NC_010552.1 1404429 1404860 D PFAM: regulatory protein MarR; KEGG: bam:Bamb_3868 transcriptional regulator, MarR family; MarR family transcriptional regulator 1404429..1404860 Burkholderia ambifaria MC40-6 6181287 YP_001811007.1 CDS BamMC406_4329 NC_010552.1 1405360 1406802 D KEGG: bam:Bamb_3869 BNR/Asp-box repeat protein; BNR/Asp-box repeat-containing protein 1405360..1406802 Burkholderia ambifaria MC40-6 6181288 YP_001811008.1 CDS BamMC406_4330 NC_010552.1 1406867 1407895 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3870 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(1406867..1407895) Burkholderia ambifaria MC40-6 6180933 YP_001811009.1 CDS BamMC406_4331 NC_010552.1 1408386 1410419 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_3871 TonB-dependent receptor; TonB-dependent receptor 1408386..1410419 Burkholderia ambifaria MC40-6 6180934 YP_001811010.1 CDS BamMC406_4332 NC_010552.1 1410832 1412469 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bur:Bcep18194_B1523 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1410832..1412469 Burkholderia ambifaria MC40-6 6180935 YP_001811011.1 CDS BamMC406_4333 NC_010552.1 1412782 1414188 D KEGG: bam:Bamb_3873 alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase 1412782..1414188 Burkholderia ambifaria MC40-6 6181186 YP_001811012.1 CDS BamMC406_4334 NC_010552.1 1414293 1416260 R KEGG: bam:Bamb_3874 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(1414293..1416260) Burkholderia ambifaria MC40-6 6181187 YP_001811013.1 CDS BamMC406_4335 NC_010552.1 1416689 1418353 D TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: bam:Bamb_3875 phosphoesterase; acid phosphatase 1416689..1418353 Burkholderia ambifaria MC40-6 6181188 YP_001811014.1 CDS BamMC406_4337 NC_010552.1 1418991 1420856 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(1418991..1420856) Burkholderia ambifaria MC40-6 6180615 YP_001811015.1 CDS BamMC406_4338 NC_010552.1 1421383 1421913 R KEGG: bur:Bcep18194_B1510 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1421383..1421913) Burkholderia ambifaria MC40-6 6180911 YP_001811016.1 CDS BamMC406_4339 NC_010552.1 1422046 1422534 D KEGG: bur:Bcep18194_B1505 hypothetical protein; hypothetical protein 1422046..1422534 Burkholderia ambifaria MC40-6 6180912 YP_001811017.1 CDS BamMC406_4340 NC_010552.1 1422587 1424173 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(1422587..1424173) Burkholderia ambifaria MC40-6 6179419 YP_001811018.1 CDS BamMC406_4341 NC_010552.1 1424559 1425080 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bam:Bamb_3880 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated protein 1424559..1425080 Burkholderia ambifaria MC40-6 6179420 YP_001811019.1 CDS BamMC406_4342 NC_010552.1 1425077 1425715 D PFAM: YheO domain protein; KEGG: bam:Bamb_3881 YheO domain protein; YheO domain-containing protein 1425077..1425715 Burkholderia ambifaria MC40-6 6179421 YP_001811020.1 CDS BamMC406_4343 NC_010552.1 1425764 1426738 D catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine; serine/threonine dehydratase 1425764..1426738 Burkholderia ambifaria MC40-6 6180424 YP_001811021.1 CDS BamMC406_4344 NC_010552.1 1426869 1427117 D KEGG: bam:Bamb_3883 hypothetical protein; hypothetical protein 1426869..1427117 Burkholderia ambifaria MC40-6 6180425 YP_001811022.1 CDS BamMC406_4345 NC_010552.1 1427172 1427342 R KEGG: bam:Bamb_3884 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1427172..1427342) Burkholderia ambifaria MC40-6 6180426 YP_001811023.1 CDS BamMC406_4346 NC_010552.1 1427979 1428101 D hypothetical protein 1427979..1428101 Burkholderia ambifaria MC40-6 6179612 YP_001811024.1 CDS BamMC406_4347 NC_010552.1 1428098 1430026 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_3886 TonB-dependent receptor; TonB-dependent receptor 1428098..1430026 Burkholderia ambifaria MC40-6 6179613 YP_001811025.1 CDS BamMC406_4348 NC_010552.1 1430089 1430727 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_3887 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1430089..1430727) Burkholderia ambifaria MC40-6 6180055 YP_001811026.1 CDS BamMC406_4349 NC_010552.1 1430842 1431303 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_3888 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1430842..1431303 Burkholderia ambifaria MC40-6 6180056 YP_001811027.1 CDS BamMC406_4350 NC_010552.1 1431541 1433079 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: bur:Bcep18194_B2997 hypothetical protein; Sel1 domain-containing protein 1431541..1433079 Burkholderia ambifaria MC40-6 6180057 YP_001811028.1 CDS BamMC406_4351 NC_010552.1 1433676 1434086 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_3889 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1433676..1434086 Burkholderia ambifaria MC40-6 6180308 YP_001811029.1 CDS BamMC406_4352 NC_010552.1 1434182 1435363 R KEGG: bch:Bcen2424_4455 collagen triple helix repeat; triple helix repeat-containing collagen complement(1434182..1435363) Burkholderia ambifaria MC40-6 6180309 YP_001811030.1 CDS BamMC406_4353 NC_010552.1 1435774 1436121 R KEGG: bam:Bamb_3892 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1435774..1436121) Burkholderia ambifaria MC40-6 6180310 YP_001811031.1 CDS BamMC406_4354 NC_010552.1 1436162 1436953 R KEGG: bam:Bamb_3893 metal-binding integral membrane protein-like protein; hypothetical protein complement(1436162..1436953) Burkholderia ambifaria MC40-6 6179761 YP_001811032.1 CDS BamMC406_4355 NC_010552.1 1436950 1437594 R PFAM: protein of unknown function DUF1326; KEGG: bam:Bamb_3894 protein of unknown function DUF1326; hypothetical protein complement(1436950..1437594) Burkholderia ambifaria MC40-6 6179762 YP_001811033.1 CDS BamMC406_4356 NC_010552.1 1437867 1439030 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3895 major facilitator superfamily MFS_1; major facilitator transporter 1437867..1439030 Burkholderia ambifaria MC40-6 6179763 YP_001811034.1 CDS BamMC406_4357 NC_010552.1 1439054 1439302 R KEGG: bam:Bamb_3896 hypothetical protein; hypothetical protein complement(1439054..1439302) Burkholderia ambifaria MC40-6 6179949 YP_001811035.1 CDS BamMC406_4358 NC_010552.1 1439592 1440107 R PFAM: transferase hexapeptide repeat containing protein; KEGG: bam:Bamb_3897 carbonic anhydrase/acetyltransferaseisoleucine patch superfamily; hexapaptide repeat-containing transferase complement(1439592..1440107) Burkholderia ambifaria MC40-6 6179950 YP_001811036.1 CDS BamMC406_4360 NC_010552.1 1440781 1441044 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1440781..1441044) Burkholderia ambifaria MC40-6 6180625 YP_001811037.1 CDS BamMC406_4361 NC_010552.1 1441506 1441709 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bam:Bamb_3900 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(1441506..1441709) Burkholderia ambifaria MC40-6 6179245 YP_001811038.1 CDS BamMC406_4364 NC_010552.1 1442742 1443152 R PFAM: PilT protein domain protein; KEGG: bam:Bamb_3902 PilT protein domain protein; PilT domain-containing protein complement(1442742..1443152) Burkholderia ambifaria MC40-6 6179416 YP_001811039.1 CDS BamMC406_4365 NC_010552.1 1443145 1443381 R KEGG: bam:Bamb_3903 hypothetical protein; hypothetical protein complement(1443145..1443381) Burkholderia ambifaria MC40-6 6179247 YP_001811040.1 CDS BamMC406_4366 NC_010552.1 1443633 1444805 R KEGG: bam:Bamb_3904 hypothetical protein; hypothetical protein complement(1443633..1444805) Burkholderia ambifaria MC40-6 6179480 YP_001811041.1 CDS BamMC406_4367 NC_010552.1 1445063 1446289 D PFAM: acyltransferase 3; KEGG: bam:Bamb_3905 acyltransferase 3; acyltransferase 3 1445063..1446289 Burkholderia ambifaria MC40-6 6179481 YP_001811042.1 CDS BamMC406_4369 NC_010552.1 1447016 1447885 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3907 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1447016..1447885) Burkholderia ambifaria MC40-6 6179417 YP_001811043.1 CDS BamMC406_4370 NC_010552.1 1448027 1449415 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3908 major facilitator superfamily MFS_1; major facilitator transporter 1448027..1449415 Burkholderia ambifaria MC40-6 6179311 YP_001811044.1 CDS BamMC406_4372 NC_010552.1 1449698 1449976 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: xac:XAC2429 hypothetical protein; CopG family transcriptional regulator complement(1449698..1449976) Burkholderia ambifaria MC40-6 6179418 YP_001811045.1 CDS BamMC406_4373 NC_010552.1 1450175 1450555 R KEGG: bch:Bcen2424_4472 hypothetical protein; hypothetical protein complement(1450175..1450555) Burkholderia ambifaria MC40-6 6179313 YP_001811046.1 CDS BamMC406_4374 NC_010552.1 1450625 1450921 R hypothetical protein complement(1450625..1450921) Burkholderia ambifaria MC40-6 6180814 YP_001811047.1 CDS BamMC406_4375 NC_010552.1 1451049 1451267 R KEGG: bam:Bamb_3910 hypothetical protein; hypothetical protein complement(1451049..1451267) Burkholderia ambifaria MC40-6 6180815 YP_001811048.1 CDS BamMC406_4376 NC_010552.1 1451326 1452489 R PFAM: protein of unknown function DUF1501; KEGG: bam:Bamb_3912 protein of unknown function DUF1501; hypothetical protein complement(1451326..1452489) Burkholderia ambifaria MC40-6 6180816 YP_001811049.1 CDS BamMC406_4377 NC_010552.1 1452492 1453886 R PFAM: Protein of unknown function DUF1800; KEGG: bam:Bamb_3913 hypothetical protein; hypothetical protein complement(1452492..1453886) Burkholderia ambifaria MC40-6 6179874 YP_001811050.1 CDS BamMC406_4378 NC_010552.1 1454092 1454883 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_3914 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(1454092..1454883) Burkholderia ambifaria MC40-6 6179875 YP_001811051.1 CDS BamMC406_4379 NC_010552.1 1455169 1455666 R KEGG: bam:Bamb_3915 integral membrane protein; integral membrane protein complement(1455169..1455666) Burkholderia ambifaria MC40-6 6179876 YP_001811052.1 CDS BamMC406_4380 NC_010552.1 1455663 1456082 R KEGG: bam:Bamb_3916 hypothetical protein; hypothetical protein complement(1455663..1456082) Burkholderia ambifaria MC40-6 6180694 YP_001811053.1 CDS BamMC406_4381 NC_010552.1 1456079 1456831 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1456079..1456831) Burkholderia ambifaria MC40-6 6180695 YP_001811054.1 CDS BamMC406_4382 NC_010552.1 1456866 1456979 R KEGG: bam:Bamb_3918 hypothetical protein; hypothetical protein complement(1456866..1456979) Burkholderia ambifaria MC40-6 6179717 YP_001811055.1 CDS BamMC406_4383 NC_010552.1 1457049 1457348 R KEGG: bam:Bamb_3919 hypothetical protein; hypothetical protein complement(1457049..1457348) Burkholderia ambifaria MC40-6 6179718 YP_001811056.1 CDS BamMC406_4384 NC_010552.1 1457665 1459350 D PFAM: metallophosphoesterase; KEGG: bam:Bamb_3920 metallophosphoesterase; metallophosphoesterase 1457665..1459350 Burkholderia ambifaria MC40-6 6179719 YP_001811057.1 CDS BamMC406_4385 NC_010552.1 1459465 1460169 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_3921 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1459465..1460169) Burkholderia ambifaria MC40-6 6179994 YP_001811058.1 CDS BamMC406_4386 NC_010552.1 1460212 1461123 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3922 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1460212..1461123) Burkholderia ambifaria MC40-6 6179995 YP_001811059.1 CDS BamMC406_4387 NC_010552.1 1461223 1461480 D KEGG: bam:Bamb_3923 hypothetical protein; hypothetical protein 1461223..1461480 Burkholderia ambifaria MC40-6 6179996 YP_001811060.1 CDS BamMC406_4388 NC_010552.1 1461759 1462058 D KEGG: bam:Bamb_3924 hypothetical protein; hypothetical protein 1461759..1462058 Burkholderia ambifaria MC40-6 6179940 YP_001811061.1 CDS BamMC406_4389 NC_010552.1 1462160 1463944 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bam:Bamb_3925 diguanylate cyclase; diguanylate cyclase complement(1462160..1463944) Burkholderia ambifaria MC40-6 6179941 YP_001811062.1 CDS BamMC406_4390 NC_010552.1 1463941 1465065 R PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_3926 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1463941..1465065) Burkholderia ambifaria MC40-6 6179942 YP_001811063.1 CDS BamMC406_4391 NC_010552.1 1465582 1467015 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_3927 transcriptional regulator, GntR family; transcriptional regulator 1465582..1467015 Burkholderia ambifaria MC40-6 6180318 YP_001811064.1 CDS BamMC406_4392 NC_010552.1 1467111 1467512 D KEGG: bam:Bamb_3928 hypothetical protein; hypothetical protein 1467111..1467512 Burkholderia ambifaria MC40-6 6180319 YP_001811065.1 CDS BamMC406_4393 NC_010552.1 1467708 1469492 D PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bam:Bamb_3929 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite/sulfite reductase hemoprotein subunit beta 1467708..1469492 Burkholderia ambifaria MC40-6 6180320 YP_001811066.1 CDS BamMC406_4394 NC_010552.1 1469489 1469947 D PFAM: conserved hypothetical protein; KEGG: bam:Bamb_3930 uncharacterised conserved protein UCP030820; hypothetical protein 1469489..1469947 Burkholderia ambifaria MC40-6 6180271 YP_001811067.1 CDS BamMC406_4395 NC_010552.1 1470027 1471307 R PFAM: virulence factor family protein; KEGG: bam:Bamb_3931 virulence factor family protein; virulence factor family protein complement(1470027..1471307) Burkholderia ambifaria MC40-6 6180272 YP_001811068.1 CDS BamMC406_4396 NC_010552.1 1471304 1473898 R PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: bam:Bamb_3932 protein of unknown function DUF470; hypothetical protein complement(1471304..1473898) Burkholderia ambifaria MC40-6 6180273 YP_001811069.1 CDS BamMC406_4397 NC_010552.1 1474270 1474704 R KEGG: bam:Bamb_3933 hypothetical protein; hypothetical protein complement(1474270..1474704) Burkholderia ambifaria MC40-6 6180321 YP_001811070.1 CDS BamMC406_4398 NC_010552.1 1474813 1479006 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: bam:Bamb_3934 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(1474813..1479006) Burkholderia ambifaria MC40-6 6180322 YP_001811071.1 CDS BamMC406_4399 NC_010552.1 1479023 1479370 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: bam:Bamb_3935 nitrite reductase (NAD(P)H), small subunit; nitrite reductase (NAD(P)H), small subunit complement(1479023..1479370) Burkholderia ambifaria MC40-6 6180323 YP_001811072.1 CDS BamMC406_4400 NC_010552.1 1479408 1482005 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_3936 nitrite reductase (NAD(P)H), large subunit; nitrite reductase (NAD(P)H), large subunit complement(1479408..1482005) Burkholderia ambifaria MC40-6 6179248 YP_001811073.1 CDS BamMC406_4401 NC_010552.1 1482026 1483351 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3937 major facilitator superfamily MFS_1; major facilitator transporter complement(1482026..1483351) Burkholderia ambifaria MC40-6 6179249 YP_001811074.1 CDS BamMC406_4402 NC_010552.1 1484028 1484798 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bam:Bamb_3939 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1484028..1484798 Burkholderia ambifaria MC40-6 6179250 YP_001811075.1 CDS BamMC406_4403 NC_010552.1 1484964 1485560 D PFAM: response regulator receiver; ANTAR domain protein; KEGG: bam:Bamb_3940 response regulator receiver and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 1484964..1485560 Burkholderia ambifaria MC40-6 6180489 YP_001811076.1 CDS BamMC406_4404 NC_010552.1 1485566 1486609 D KEGG: bam:Bamb_3941 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 1485566..1486609 Burkholderia ambifaria MC40-6 6180490 YP_001811077.1 CDS BamMC406_4405 NC_010552.1 1486777 1487376 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: bam:Bamb_3942 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily protein 1486777..1487376 Burkholderia ambifaria MC40-6 6180491 YP_001811078.1 CDS BamMC406_4406 NC_010552.1 1487409 1488200 D PFAM: protein of unknown function UPF0153; KEGG: bam:Bamb_3943 protein of unknown function UPF0153; hypothetical protein 1487409..1488200 Burkholderia ambifaria MC40-6 6180758 YP_001811079.1 CDS BamMC406_4407 NC_010552.1 1488328 1489269 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_3944 transcriptional regulator, AraC family; AraC family transcriptional regulator 1488328..1489269 Burkholderia ambifaria MC40-6 6180759 YP_001811080.1 CDS BamMC406_4408 NC_010552.1 1489399 1490097 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bam:Bamb_3945 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1489399..1490097 Burkholderia ambifaria MC40-6 6180760 YP_001811081.1 CDS BamMC406_4409 NC_010552.1 1490216 1491427 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3946 major facilitator superfamily MFS_1; major facilitator transporter complement(1490216..1491427) Burkholderia ambifaria MC40-6 6181420 YP_001811082.1 CDS BamMC406_4410 NC_010552.1 1491654 1493408 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bam:Bamb_3947 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap complement(1491654..1493408) Burkholderia ambifaria MC40-6 6181421 YP_001811083.1 CDS BamMC406_4411 NC_010552.1 1493543 1494418 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3948 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1493543..1494418) Burkholderia ambifaria MC40-6 6181087 YP_001811084.1 CDS BamMC406_4412 NC_010552.1 1494516 1495820 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3949 major facilitator superfamily MFS_1; major facilitator transporter 1494516..1495820 Burkholderia ambifaria MC40-6 6181088 YP_001811085.1 CDS BamMC406_4413 NC_010552.1 1496020 1497492 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_3950 transcriptional regulator, GntR family; transcriptional regulator complement(1496020..1497492) Burkholderia ambifaria MC40-6 6181089 YP_001811086.1 CDS BamMC406_4414 NC_010552.1 1497661 1498902 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_3951 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 1497661..1498902 Burkholderia ambifaria MC40-6 6181317 YP_001811087.1 CDS BamMC406_4415 NC_010552.1 1498926 1499390 R KEGG: bam:Bamb_3952 hypothetical protein; hypothetical protein complement(1498926..1499390) Burkholderia ambifaria MC40-6 6181318 YP_001811088.1 CDS BamMC406_4416 NC_010552.1 1499873 1500937 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_3953 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 1499873..1500937 Burkholderia ambifaria MC40-6 6181319 YP_001811089.1 CDS BamMC406_4417 NC_010552.1 1501165 1501821 D KEGG: bam:Bamb_3954 hypothetical protein; hypothetical protein 1501165..1501821 Burkholderia ambifaria MC40-6 6181225 YP_001811090.1 CDS BamMC406_4418 NC_010552.1 1501888 1502766 D PFAM: Abortive infection protein; KEGG: bam:Bamb_3955 abortive infection protein; abortive infection protein 1501888..1502766 Burkholderia ambifaria MC40-6 6181226 YP_001811091.1 CDS BamMC406_4419 NC_010552.1 1502812 1503792 R PFAM: aldo/keto reductase; KEGG: bam:Bamb_3956 aldo/keto reductase; aldo/keto reductase complement(1502812..1503792) Burkholderia ambifaria MC40-6 6181227 YP_001811092.1 CDS BamMC406_4420 NC_010552.1 1504032 1504703 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: bam:Bamb_3957 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein complement(1504032..1504703) Burkholderia ambifaria MC40-6 6181374 YP_001811093.1 CDS BamMC406_4421 NC_010552.1 1504834 1505634 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bam:Bamb_3958 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1504834..1505634) Burkholderia ambifaria MC40-6 6181375 YP_001811094.1 CDS BamMC406_4422 NC_010552.1 1505675 1506997 R TIGRFAM: phenylacetate-CoA ligase; KEGG: bam:Bamb_3959 phenylacetate-CoA ligase; phenylacetate-CoA ligase complement(1505675..1506997) Burkholderia ambifaria MC40-6 6181376 YP_001811095.1 CDS BamMC406_4423 NC_010552.1 1507057 1508610 R converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxy-acyl-CoA dehydrogenase complement(1507057..1508610) Burkholderia ambifaria MC40-6 6181139 YP_001811096.1 CDS BamMC406_4424 NC_010552.1 1509155 1510243 D PFAM: sodium/calcium exchanger membrane region; KEGG: bam:Bamb_3961 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region 1509155..1510243 Burkholderia ambifaria MC40-6 6181140 YP_001811097.1 CDS BamMC406_4425 NC_010552.1 1510422 1511330 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3962 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1510422..1511330) Burkholderia ambifaria MC40-6 6181141 YP_001811098.1 CDS BamMC406_4426 NC_010552.1 1511548 1512516 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3964 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1511548..1512516) Burkholderia ambifaria MC40-6 6181533 YP_001811099.1 CDS BamMC406_4427 NC_010552.1 1512881 1514056 D PFAM: CBS domain containing protein; HPP family protein?; KEGG: bam:Bamb_3965 CBS domain containing membrane protein; CBS domain-containing protein 1512881..1514056 Burkholderia ambifaria MC40-6 6181534 YP_001811100.1 CDS BamMC406_4428 NC_010552.1 1514174 1514587 D PFAM: regulatory protein MarR; KEGG: bam:Bamb_3966 transcriptional regulator, MarR family; MarR family transcriptional regulator 1514174..1514587 Burkholderia ambifaria MC40-6 6181535 YP_001811101.1 CDS BamMC406_4429 NC_010552.1 1514618 1516405 D PFAM: CBS domain containing protein; Chloride channel core; KEGG: bam:Bamb_3967 Cl-channel, voltage-gated family protein; chloride channel core protein 1514618..1516405 Burkholderia ambifaria MC40-6 6180648 YP_001811102.1 CDS BamMC406_4430 NC_010552.1 1516893 1517219 D KEGG: bam:Bamb_3968 hypothetical protein; hypothetical protein 1516893..1517219 Burkholderia ambifaria MC40-6 6180649 YP_001811103.1 CDS BamMC406_4431 NC_010552.1 1517305 1517625 R PFAM: protein of unknown function DUF1255; KEGG: bch:Bcen2424_4545 protein of unknown function DUF1255; hypothetical protein complement(1517305..1517625) Burkholderia ambifaria MC40-6 6180650 YP_001811104.1 CDS BamMC406_4432 NC_010552.1 1517803 1518705 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3970 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1517803..1518705) Burkholderia ambifaria MC40-6 6179282 YP_001811105.1 CDS BamMC406_4433 NC_010552.1 1518888 1520072 D KEGG: bam:Bamb_3971 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1518888..1520072 Burkholderia ambifaria MC40-6 6179283 YP_001811106.1 CDS BamMC406_4434 NC_010552.1 1520116 1521441 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_3972 major facilitator superfamily MFS_1; major facilitator transporter 1520116..1521441 Burkholderia ambifaria MC40-6 6179284 YP_001811107.1 CDS BamMC406_4435 NC_010552.1 1521672 1522214 D PFAM: isochorismatase hydrolase; KEGG: bch:Bcen2424_4549 isochorismatase hydrolase; isochorismatase hydrolase 1521672..1522214 Burkholderia ambifaria MC40-6 6180764 YP_001811108.1 CDS BamMC406_4436 NC_010552.1 1522479 1523072 R KEGG: mms:mma_2729 hypothetical protein; hypothetical protein complement(1522479..1523072) Burkholderia ambifaria MC40-6 6180765 YP_001811109.1 CDS BamMC406_4437 NC_010552.1 1523298 1523705 R PFAM: Domain of unknown function DUF1863; KEGG: shm:Shewmr7_1038 hypothetical protein; hypothetical protein complement(1523298..1523705) Burkholderia ambifaria MC40-6 6180766 YP_001811110.1 CDS BamMC406_4438 NC_010552.1 1523780 1525210 R KEGG: bbr:BB0483 hypothetical protein; hypothetical protein complement(1523780..1525210) Burkholderia ambifaria MC40-6 6181329 YP_001811111.1 CDS BamMC406_4439 NC_010552.1 1525825 1526934 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_3975 porin, gram-negative type; porin complement(1525825..1526934) Burkholderia ambifaria MC40-6 6181330 YP_001811112.1 CDS BamMC406_4440 NC_010552.1 1526992 1527411 R PFAM: DoxX family protein; KEGG: bam:Bamb_3976 DoxX family protein; DoxX family protein complement(1526992..1527411) Burkholderia ambifaria MC40-6 6180761 YP_001811113.1 CDS BamMC406_4441 NC_010552.1 1527600 1528877 R PFAM: cytochrome c class I; KEGG: bam:Bamb_3977 cytochrome c, class I; gluconate 2-dehydrogenase (acceptor) complement(1527600..1528877) Burkholderia ambifaria MC40-6 6180762 YP_001811114.1 CDS BamMC406_4442 NC_010552.1 1528880 1530499 R PFAM: glucose-methanol-choline oxidoreductase; KEGG: bam:Bamb_3978 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(1528880..1530499) Burkholderia ambifaria MC40-6 6180763 YP_001811115.1 CDS BamMC406_4443 NC_010552.1 1530499 1531005 R KEGG: bam:Bamb_3979 hypothetical protein; hypothetical protein complement(1530499..1531005) Burkholderia ambifaria MC40-6 6179657 YP_001811116.1 CDS BamMC406_4444 NC_010552.1 1531314 1537355 D PFAM: alpha-2-macroglobulin domain protein; KEGG: bam:Bamb_3980 alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain-containing protein 1531314..1537355 Burkholderia ambifaria MC40-6 6179658 YP_001811117.1 CDS BamMC406_4445 NC_010552.1 1537363 1539600 D TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bam:Bamb_3981 penicillin-binding protein 1C; penicillin-binding protein 1C 1537363..1539600 Burkholderia ambifaria MC40-6 6179659 YP_001811118.1 CDS BamMC406_4446 NC_010552.1 1539794 1540486 D KEGG: bam:Bamb_3982 hypothetical protein; hypothetical protein 1539794..1540486 Burkholderia ambifaria MC40-6 6180767 YP_001811119.1 CDS BamMC406_4447 NC_010552.1 1540522 1541769 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_3983 major facilitator superfamily MFS_1; major facilitator transporter complement(1540522..1541769) Burkholderia ambifaria MC40-6 6180768 YP_001811120.1 CDS BamMC406_4448 NC_010552.1 1542127 1542666 D KEGG: bam:Bamb_3984 hypothetical protein; hypothetical protein 1542127..1542666 Burkholderia ambifaria MC40-6 6180769 YP_001811121.1 CDS BamMC406_4449 NC_010552.1 1542959 1543819 D KEGG: bam:Bamb_3985 hypothetical protein; hypothetical protein 1542959..1543819 Burkholderia ambifaria MC40-6 6180544 YP_001811122.1 CDS BamMC406_4450 NC_010552.1 1543905 1544579 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_3986 transcriptional regulator, GntR family; GntR family transcriptional regulator 1543905..1544579 Burkholderia ambifaria MC40-6 6180545 YP_001811123.1 CDS ectC NC_010552.1 1544632 1545030 R N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase complement(1544632..1545030) Burkholderia ambifaria MC40-6 6180546 YP_001811124.1 CDS BamMC406_4452 NC_010552.1 1545097 1546437 R PFAM: Amidase; KEGG: bam:Bamb_3988 amidase; amidase complement(1545097..1546437) Burkholderia ambifaria MC40-6 6181183 YP_001811125.1 CDS BamMC406_4453 NC_010552.1 1546461 1547963 R KEGG: bam:Bamb_3989 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; SMART: AAA ATPase; polar amino acid ABC transporter inner membrane subunit complement(1546461..1547963) Burkholderia ambifaria MC40-6 6181184 YP_001811126.1 CDS BamMC406_4454 NC_010552.1 1548047 1548889 R PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3990 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1548047..1548889) Burkholderia ambifaria MC40-6 6181185 YP_001811127.1 CDS BamMC406_4455 NC_010552.1 1549361 1550257 R PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3991 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1549361..1550257) Burkholderia ambifaria MC40-6 6179525 YP_001811128.1 CDS BamMC406_4456 NC_010552.1 1550670 1552337 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bam:Bamb_3992 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1550670..1552337 Burkholderia ambifaria MC40-6 6179526 YP_001811129.1 CDS BamMC406_4457 NC_010552.1 1553068 1555839 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bam:Bamb_3993 magnesium-translocating P-type ATPase; magnesium-translocating P-type ATPase 1553068..1555839 Burkholderia ambifaria MC40-6 6179527 YP_001811130.1 CDS BamMC406_4458 NC_010552.1 1555908 1556651 D KEGG: bam:Bamb_3994 hypothetical protein; hypothetical protein 1555908..1556651 Burkholderia ambifaria MC40-6 6180291 YP_001811131.1 CDS BamMC406_4459 NC_010552.1 1556724 1557059 R KEGG: bam:Bamb_3995 hypothetical protein; hypothetical protein complement(1556724..1557059) Burkholderia ambifaria MC40-6 6180292 YP_001811132.1 CDS BamMC406_4460 NC_010552.1 1557081 1557956 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3996 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1557081..1557956) Burkholderia ambifaria MC40-6 6180293 YP_001811133.1 CDS BamMC406_4461 NC_010552.1 1558050 1558295 D KEGG: bch:Bcen2424_4568 hypothetical protein; hypothetical protein 1558050..1558295 Burkholderia ambifaria MC40-6 6179536 YP_001811134.1 CDS BamMC406_4462 NC_010552.1 1558493 1559572 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bam:Bamb_3998 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 1558493..1559572 Burkholderia ambifaria MC40-6 6179537 YP_001811135.1 CDS BamMC406_4463 NC_010552.1 1559661 1560116 D PFAM: regulatory protein MarR; KEGG: bam:Bamb_4000 transcriptional regulator, MarR family; MarR family transcriptional regulator 1559661..1560116 Burkholderia ambifaria MC40-6 6179538 YP_001811136.1 CDS BamMC406_4464 NC_010552.1 1560187 1560750 D PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_4001 isochorismatase hydrolase; isochorismatase hydrolase 1560187..1560750 Burkholderia ambifaria MC40-6 6179219 YP_001811137.1 CDS BamMC406_4465 NC_010552.1 1560747 1562204 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4002 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 1560747..1562204 Burkholderia ambifaria MC40-6 6179220 YP_001811138.1 CDS BamMC406_4466 NC_010552.1 1562548 1563789 D PFAM: MscS Mechanosensitive ion channel; KEGG: bam:Bamb_4004 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 1562548..1563789 Burkholderia ambifaria MC40-6 6179221 YP_001811139.1 CDS BamMC406_4467 NC_010552.1 1563823 1565244 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_4005 transcriptional regulator, GntR family; transcriptional regulator complement(1563823..1565244) Burkholderia ambifaria MC40-6 6179915 YP_001811140.1 CDS BamMC406_4468 NC_010552.1 1565398 1567722 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bam:Bamb_4006 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase alpha (molybdopterin) subunit 1565398..1567722 Burkholderia ambifaria MC40-6 6179916 YP_001811141.1 CDS BamMC406_4469 NC_010552.1 1567735 1568655 D PFAM: protein of unknown function UPF0187; KEGG: bam:Bamb_4007 protein of unknown function UPF0187; hypothetical protein 1567735..1568655 Burkholderia ambifaria MC40-6 6179465 YP_001811142.1 CDS BamMC406_4470 NC_010552.1 1568697 1570727 R PFAM: Fusaric acid resistance protein conserved region; KEGG: bam:Bamb_4008 fusaric acid resistance protein conserved region; fusaric acid resistance protein complement(1568697..1570727) Burkholderia ambifaria MC40-6 6179466 YP_001811143.1 CDS BamMC406_4471 NC_010552.1 1570876 1571778 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4009 transcriptional regulator, LysR family; LysR family transcriptional regulator 1570876..1571778 Burkholderia ambifaria MC40-6 6179467 YP_001811144.1 CDS BamMC406_4472 NC_010552.1 1572198 1573757 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4010 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 1572198..1573757 Burkholderia ambifaria MC40-6 6179708 YP_001811145.1 CDS BamMC406_4473 NC_010552.1 1574162 1574641 D KEGG: bam:Bamb_4011 hypothetical protein; hypothetical protein 1574162..1574641 Burkholderia ambifaria MC40-6 6179709 YP_001811146.1 CDS BamMC406_4474 NC_010552.1 1574777 1576366 D PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_4012 extracellular solute-binding protein, family 5; extracellular solute-binding protein 1574777..1576366 Burkholderia ambifaria MC40-6 6179710 YP_001811147.1 CDS BamMC406_4475 NC_010552.1 1576449 1577765 R TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bam:Bamb_4013 Mn2+/Fe2+ transporter, NRAMP family; Mn2+/Fe2+ transporter complement(1576449..1577765) Burkholderia ambifaria MC40-6 6179672 YP_001811148.1 CDS BamMC406_4476 NC_010552.1 1577848 1579104 R KEGG: bam:Bamb_4014 oxalate decarboxylase; TIGRFAM: bicupin, oxalate decarboxylase family; PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein; oxalate decarboxylase complement(1577848..1579104) Burkholderia ambifaria MC40-6 6179673 YP_001811149.1 CDS BamMC406_4477 NC_010552.1 1579706 1580590 D KEGG: bam:Bamb_4015 putative transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1579706..1580590 Burkholderia ambifaria MC40-6 6179674 YP_001811150.1 CDS BamMC406_4478 NC_010552.1 1580605 1581168 D catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis; D-alanyl-D-alanine dipeptidase 1580605..1581168 Burkholderia ambifaria MC40-6 6180009 YP_001811151.1 CDS BamMC406_4479 NC_010552.1 1581251 1582852 D PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_4017 extracellular solute-binding protein, family 5; extracellular solute-binding protein 1581251..1582852 Burkholderia ambifaria MC40-6 6180010 YP_001811152.1 CDS BamMC406_4480 NC_010552.1 1582863 1583933 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4018 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1582863..1583933 Burkholderia ambifaria MC40-6 6180011 YP_001811153.1 CDS BamMC406_4481 NC_010552.1 1584000 1584914 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4019 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1584000..1584914 Burkholderia ambifaria MC40-6 6179395 YP_001811154.1 CDS BamMC406_4482 NC_010552.1 1584916 1585830 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4020 ABC transporter related; ABC transporter-like protein 1584916..1585830 Burkholderia ambifaria MC40-6 6179396 YP_001811155.1 CDS BamMC406_4483 NC_010552.1 1585827 1586588 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4021 ABC transporter related; ABC transporter-like protein 1585827..1586588 Burkholderia ambifaria MC40-6 6179397 YP_001811156.1 CDS BamMC406_4484 NC_010552.1 1586732 1586986 D PFAM: Transglycosylase-associated protein; KEGG: bam:Bamb_4026 transglycosylase-associated protein; transglycosylase-associated protein 1586732..1586986 Burkholderia ambifaria MC40-6 6181306 YP_001811157.1 CDS BamMC406_4485 NC_010552.1 1587343 1587678 D KEGG: bam:Bamb_4027 hypothetical protein; hypothetical protein 1587343..1587678 Burkholderia ambifaria MC40-6 6181307 YP_001811158.1 CDS BamMC406_4486 NC_010552.1 1587701 1588573 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4028 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1587701..1588573) Burkholderia ambifaria MC40-6 6181308 YP_001811159.1 CDS BamMC406_4487 NC_010552.1 1588698 1589597 R PFAM: beta-lactamase; KEGG: bam:Bamb_4029 beta-lactamase; beta-lactamase complement(1588698..1589597) Burkholderia ambifaria MC40-6 6179554 YP_001811160.1 CDS BamMC406_4488 NC_010552.1 1589806 1590645 R PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: bam:Bamb_4030 peptidase M23B; peptidase M23 complement(1589806..1590645) Burkholderia ambifaria MC40-6 6179555 YP_001811161.1 CDS BamMC406_4489 NC_010552.1 1590913 1591023 R KEGG: bam:Bamb_4031 hypothetical protein; hypothetical protein complement(1590913..1591023) Burkholderia ambifaria MC40-6 6179556 YP_001811162.1 CDS BamMC406_4490 NC_010552.1 1591183 1592079 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4032 transcriptional regulator, LysR family; LysR family transcriptional regulator 1591183..1592079 Burkholderia ambifaria MC40-6 6179568 YP_001811163.1 CDS BamMC406_4491 NC_010552.1 1592140 1592526 D PFAM: protein of unknown function DUF1486; KEGG: bam:Bamb_4033 protein of unknown function DUF1486; hypothetical protein 1592140..1592526 Burkholderia ambifaria MC40-6 6179569 YP_001811164.1 CDS BamMC406_4492 NC_010552.1 1592593 1593333 R PFAM: protein of unknown function DUF81; KEGG: bam:Bamb_4034 protein of unknown function DUF81; hypothetical protein complement(1592593..1593333) Burkholderia ambifaria MC40-6 6179570 YP_001811165.1 CDS BamMC406_4493 NC_010552.1 1593478 1594494 R PFAM: aldo/keto reductase; KEGG: bam:Bamb_4035 aldo/keto reductase; aldo/keto reductase complement(1593478..1594494) Burkholderia ambifaria MC40-6 6181093 YP_001811166.1 CDS BamMC406_4494 NC_010552.1 1594631 1595542 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4036 transcriptional regulator, LysR family; LysR family transcriptional regulator 1594631..1595542 Burkholderia ambifaria MC40-6 6181094 YP_001811167.1 CDS BamMC406_4495 NC_010552.1 1595590 1596744 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_4037 porin, gram-negative type; porin complement(1595590..1596744) Burkholderia ambifaria MC40-6 6181095 YP_001811168.1 CDS BamMC406_4496 NC_010552.1 1597126 1598229 D KEGG: bam:Bamb_4038 hypothetical protein; hypothetical protein 1597126..1598229 Burkholderia ambifaria MC40-6 6180928 YP_001811169.1 CDS BamMC406_4497 NC_010552.1 1598291 1599235 D PFAM: putative esterase; KEGG: bam:Bamb_4039 putative esterase; putative esterase 1598291..1599235 Burkholderia ambifaria MC40-6 6180929 YP_001811170.1 CDS BamMC406_4498 NC_010552.1 1599473 1600741 R PFAM: monooxygenase FAD-binding; KEGG: bam:Bamb_4040 salicylate 1-monooxygenase; salicylate 1-monooxygenase complement(1599473..1600741) Burkholderia ambifaria MC40-6 6180916 YP_001811171.1 CDS BamMC406_4499 NC_010552.1 1600870 1601814 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4041 transcriptional regulator, LysR family; LysR family transcriptional regulator 1600870..1601814 Burkholderia ambifaria MC40-6 6180917 YP_001811172.1 CDS BamMC406_4500 NC_010552.1 1601914 1602672 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4042 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1601914..1602672 Burkholderia ambifaria MC40-6 6180918 YP_001811173.1 CDS BamMC406_4501 NC_010552.1 1602818 1603828 D PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bam:Bamb_4043 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator 1602818..1603828 Burkholderia ambifaria MC40-6 6180251 YP_001811174.1 CDS BamMC406_4502 NC_010552.1 1603866 1604198 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_4044 cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein complement(1603866..1604198) Burkholderia ambifaria MC40-6 6180252 YP_001811175.1 CDS BamMC406_4503 NC_010552.1 1604328 1605806 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bam:Bamb_4045 diguanylate cyclase; diguanylate cyclase complement(1604328..1605806) Burkholderia ambifaria MC40-6 6180253 YP_001811176.1 CDS BamMC406_4504 NC_010552.1 1605961 1607055 R PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: bam:Bamb_4046 TrkA-N domain protein; TrkA domain-containing protein complement(1605961..1607055) Burkholderia ambifaria MC40-6 6180357 YP_001811177.1 CDS BamMC406_4505 NC_010552.1 1607168 1608502 R PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_4047 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1607168..1608502) Burkholderia ambifaria MC40-6 6180358 YP_001811178.1 CDS BamMC406_4506 NC_010552.1 1608754 1609401 D KEGG: bam:Bamb_4048 GP32; GP32 1608754..1609401 Burkholderia ambifaria MC40-6 6180359 YP_001811179.1 CDS BamMC406_4507 NC_010552.1 1609755 1610030 R KEGG: bam:Bamb_4049 hypothetical protein; hypothetical protein complement(1609755..1610030) Burkholderia ambifaria MC40-6 6180930 YP_001811180.1 CDS BamMC406_4508 NC_010552.1 1610314 1610583 R KEGG: bam:Bamb_4050 hypothetical protein; hypothetical protein complement(1610314..1610583) Burkholderia ambifaria MC40-6 6180931 YP_001811181.1 CDS BamMC406_4509 NC_010552.1 1611058 1611912 D PFAM: BetR domain protein; KEGG: bam:Bamb_4051 response regulator receiver protein; response regulator receiver protein 1611058..1611912 Burkholderia ambifaria MC40-6 6180932 YP_001811182.1 CDS BamMC406_4510 NC_010552.1 1612026 1613693 D PFAM: NERD domain protein; KEGG: bam:Bamb_4052 hypothetical protein; NERD domain-containing protein 1612026..1613693 Burkholderia ambifaria MC40-6 6180565 YP_001811183.1 CDS BamMC406_4511 NC_010552.1 1613863 1615422 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_4055 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1613863..1615422) Burkholderia ambifaria MC40-6 6180566 YP_001811184.1 CDS BamMC406_4512 NC_010552.1 1615651 1617165 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4056 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 1615651..1617165 Burkholderia ambifaria MC40-6 6180567 YP_001811185.1 CDS BamMC406_4513 NC_010552.1 1617262 1618260 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_4057 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(1617262..1618260) Burkholderia ambifaria MC40-6 6180970 YP_001811186.1 CDS BamMC406_4514 NC_010552.1 1618386 1619264 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_4668 transcriptional regulator, LysR family; LysR family transcriptional regulator 1618386..1619264 Burkholderia ambifaria MC40-6 6180971 YP_001811187.1 CDS BamMC406_4515 NC_010552.1 1619281 1620645 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reh:H16_B1919 MFS transporter, AAHS family; major facilitator transporter complement(1619281..1620645) Burkholderia ambifaria MC40-6 6180972 YP_001811188.1 CDS BamMC406_4516 NC_010552.1 1621062 1622081 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1118 putative AraC-family transcriptional regulator; AraC family transcriptional regulator 1621062..1622081 Burkholderia ambifaria MC40-6 6179917 YP_001811189.1 CDS BamMC406_4517 NC_010552.1 1622179 1622742 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4059 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 1622179..1622742 Burkholderia ambifaria MC40-6 6179918 YP_001811190.1 CDS BamMC406_4518 NC_010552.1 1622752 1623600 D PFAM: regulatory protein MerR; KEGG: bam:Bamb_4060 transcriptional regulator, MerR family; MerR family transcriptional regulator 1622752..1623600 Burkholderia ambifaria MC40-6 6179919 YP_001811191.1 CDS BamMC406_4519 NC_010552.1 1623725 1624705 D KEGG: bam:Bamb_4061 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonate ABC transporter periplasmic ligand-binding protein 1623725..1624705 Burkholderia ambifaria MC40-6 6181211 YP_001811192.1 CDS BamMC406_4520 NC_010552.1 1624797 1625702 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4062 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1624797..1625702) Burkholderia ambifaria MC40-6 6181212 YP_001811193.1 CDS BamMC406_4521 NC_010552.1 1625821 1626411 D KEGG: bam:Bamb_4063 hypothetical protein; hypothetical protein 1625821..1626411 Burkholderia ambifaria MC40-6 6181213 YP_001811194.1 CDS BamMC406_4522 NC_010552.1 1626738 1626941 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bam:Bamb_4064 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 1626738..1626941 Burkholderia ambifaria MC40-6 6179920 YP_001811195.1 CDS BamMC406_4523 NC_010552.1 1627225 1627434 D KEGG: bam:Bamb_4065 hypothetical protein; hypothetical protein 1627225..1627434 Burkholderia ambifaria MC40-6 6179921 YP_001811196.1 CDS BamMC406_4524 NC_010552.1 1627490 1628458 R catalyzes the formation of putrescine from agmatine; agmatinase complement(1627490..1628458) Burkholderia ambifaria MC40-6 6179922 YP_001811197.1 CDS BamMC406_4525 NC_010552.1 1628829 1629500 D PFAM: YhhN family protein; KEGG: bam:Bamb_4067 YhhN family protein; YhhN family protein 1628829..1629500 Burkholderia ambifaria MC40-6 6180579 YP_001811198.1 CDS BamMC406_4526 NC_010552.1 1629747 1631327 D KEGG: bam:Bamb_4068 flavin-containing monooxygenase FMO; flavin-containing monooxygenase FMO 1629747..1631327 Burkholderia ambifaria MC40-6 6180580 YP_001811199.1 CDS BamMC406_4527 NC_010552.1 1631349 1632284 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_4675 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1631349..1632284 Burkholderia ambifaria MC40-6 6180191 YP_001811200.1 CDS BamMC406_4528 NC_010552.1 1632281 1633186 D KEGG: bur:Bcep18194_B1143 metal-dependent hydrolase; metal-dependent hydrolase 1632281..1633186 Burkholderia ambifaria MC40-6 6180192 YP_001811201.1 CDS BamMC406_4529 NC_010552.1 1633191 1634126 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_4071 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1633191..1634126 Burkholderia ambifaria MC40-6 6180193 YP_001811202.1 CDS BamMC406_4530 NC_010552.1 1634087 1634641 R PFAM: protein of unknown function DUF1089; KEGG: bam:Bamb_4072 protein of unknown function DUF1089; hypothetical protein complement(1634087..1634641) Burkholderia ambifaria MC40-6 6179740 YP_001811203.1 CDS BamMC406_4531 NC_010552.1 1634729 1636273 R PFAM: filamentation induced by cAMP protein Fic; KEGG: pmy:Pmen_2182 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic complement(1634729..1636273) Burkholderia ambifaria MC40-6 6179741 YP_001811204.1 CDS BamMC406_4532 NC_010552.1 1636559 1637449 D PFAM: Urea transporter; KEGG: bam:Bamb_4073 UreA transporter; Urea transporter 1636559..1637449 Burkholderia ambifaria MC40-6 6179742 YP_001811205.1 CDS BamMC406_4533 NC_010552.1 1637424 1638200 D PFAM: class II aldolase/adducin family protein; KEGG: bam:Bamb_4074 hypothetical protein; aldolase II superfamily protein 1637424..1638200 Burkholderia ambifaria MC40-6 6180776 YP_001811206.1 CDS BamMC406_4534 NC_010552.1 1638260 1638448 D 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 1638260..1638448 Burkholderia ambifaria MC40-6 6180777 YP_001811207.1 CDS BamMC406_4535 NC_010552.1 1638824 1639156 D KEGG: bps:BPSL1741 hypothetical protein; hypothetical protein 1638824..1639156 Burkholderia ambifaria MC40-6 6180778 YP_001811208.1 CDS BamMC406_4536 NC_010552.1 1639254 1640708 D TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: bpd:BURPS668_1969 arginine/ornithine antiporter; arginine/ornithine antiporter 1639254..1640708 Burkholderia ambifaria MC40-6 6180435 YP_001811209.1 CDS BamMC406_4537 NC_010552.1 1640726 1641982 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 1640726..1641982 Burkholderia ambifaria MC40-6 6180436 YP_001811210.1 CDS BamMC406_4538 NC_010552.1 1642030 1643040 D catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 1642030..1643040 Burkholderia ambifaria MC40-6 6180437 YP_001811211.1 CDS BamMC406_4539 NC_010552.1 1643105 1644043 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1643105..1644043 Burkholderia ambifaria MC40-6 6179666 YP_001811212.1 CDS BamMC406_4540 NC_010552.1 1644239 1644460 D KEGG: bam:Bamb_4076 putative cytoplasmic protein; putative cytoplasmic protein 1644239..1644460 Burkholderia ambifaria MC40-6 6179667 YP_001811213.1 CDS BamMC406_4541 NC_010552.1 1644612 1649453 D PFAM: NAD-glutamate dehydrogenase; KEGG: bam:Bamb_4077 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 1644612..1649453 Burkholderia ambifaria MC40-6 6179668 YP_001811214.1 CDS BamMC406_4542 NC_010552.1 1649469 1650347 R TIGRFAM: methyltransferase; PFAM: O-methyltransferase domain protein; KEGG: bam:Bamb_4078 putative methyltransferase; methyltransferase complement(1649469..1650347) Burkholderia ambifaria MC40-6 6181476 YP_001811215.1 CDS BamMC406_4543 NC_010552.1 1650358 1650708 R KEGG: bam:Bamb_4079 hypothetical protein; hypothetical protein complement(1650358..1650708) Burkholderia ambifaria MC40-6 6181477 YP_001811216.1 CDS BamMC406_4544 NC_010552.1 1650710 1650973 R KEGG: bam:Bamb_4080 hypothetical protein; hypothetical protein complement(1650710..1650973) Burkholderia ambifaria MC40-6 6181478 YP_001811217.1 CDS BamMC406_4545 NC_010552.1 1650993 1651826 R PFAM: N-acetyltransferase; KEGG: bam:Bamb_4081 N-hydroxyarylamine O-acetyltransferase; N-hydroxyarylamine O-acetyltransferase complement(1650993..1651826) Burkholderia ambifaria MC40-6 6180387 YP_001811218.1 CDS BamMC406_4546 NC_010552.1 1651947 1652639 R KEGG: bam:Bamb_4082 hypothetical protein; hypothetical protein complement(1651947..1652639) Burkholderia ambifaria MC40-6 6180388 YP_001811219.1 CDS BamMC406_4547 NC_010552.1 1652886 1654370 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1652886..1654370) Burkholderia ambifaria MC40-6 6180389 YP_001811220.1 CDS BamMC406_4548 NC_010552.1 1654767 1655201 D KEGG: bam:Bamb_4084 hypothetical protein; hypothetical protein 1654767..1655201 Burkholderia ambifaria MC40-6 6179370 YP_001811221.1 CDS BamMC406_4549 NC_010552.1 1655413 1655523 R KEGG: bmu:Bmul_4001 hypothetical protein; hypothetical protein complement(1655413..1655523) Burkholderia ambifaria MC40-6 6179371 YP_001811222.1 CDS BamMC406_4550 NC_010552.1 1655869 1656117 D KEGG: bam:Bamb_4085 hypothetical protein; hypothetical protein 1655869..1656117 Burkholderia ambifaria MC40-6 6179372 YP_001811223.1 CDS BamMC406_4551 NC_010552.1 1656670 1657959 D PFAM: natural resistance-associated macrophage protein; KEGG: bam:Bamb_4086 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 1656670..1657959 Burkholderia ambifaria MC40-6 6179975 YP_001811224.1 CDS BamMC406_4552 NC_010552.1 1658069 1659304 D KEGG: bam:Bamb_4087 hypothetical protein; hypothetical protein 1658069..1659304 Burkholderia ambifaria MC40-6 6179976 YP_001811225.1 CDS BamMC406_4553 NC_010552.1 1659344 1659745 R PFAM: protein of unknown function DUF296; KEGG: bam:Bamb_4088 protein of unknown function DUF296; hypothetical protein complement(1659344..1659745) Burkholderia ambifaria MC40-6 6179977 YP_001811226.1 CDS BamMC406_4554 NC_010552.1 1659861 1660883 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_4089 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit complement(1659861..1660883) Burkholderia ambifaria MC40-6 6181354 YP_001811227.1 CDS BamMC406_4555 NC_010552.1 1660897 1662564 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(1660897..1662564) Burkholderia ambifaria MC40-6 6181355 YP_001811228.1 CDS BamMC406_4556 NC_010552.1 1662757 1662993 R KEGG: bam:Bamb_4091 hypothetical protein; hypothetical protein complement(1662757..1662993) Burkholderia ambifaria MC40-6 6181395 YP_001811229.1 CDS BamMC406_4557 NC_010552.1 1663172 1664572 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4092 major facilitator superfamily MFS_1; major facilitator transporter complement(1663172..1664572) Burkholderia ambifaria MC40-6 6181396 YP_001811230.1 CDS BamMC406_4558 NC_010552.1 1664601 1665845 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_4093 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1664601..1665845) Burkholderia ambifaria MC40-6 6181397 YP_001811231.1 CDS BamMC406_4559 NC_010552.1 1665842 1666804 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_4094 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1665842..1666804) Burkholderia ambifaria MC40-6 6179308 YP_001811232.1 CDS BamMC406_4560 NC_010552.1 1666823 1668313 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4095 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase complement(1666823..1668313) Burkholderia ambifaria MC40-6 6179309 YP_001811233.1 CDS BamMC406_4561 NC_010552.1 1668411 1669238 R catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase complement(1668411..1669238) Burkholderia ambifaria MC40-6 6179310 YP_001811234.1 CDS BamMC406_4562 NC_010552.1 1669231 1670898 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bam:Bamb_4097 hypothetical protein; hypothetical protein complement(1669231..1670898) Burkholderia ambifaria MC40-6 6179265 YP_001811235.1 CDS BamMC406_4563 NC_010552.1 1670891 1671688 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4098 short chain dehydrogenase; short chain dehydrogenase complement(1670891..1671688) Burkholderia ambifaria MC40-6 6179266 YP_001811236.1 CDS BamMC406_4564 NC_010552.1 1671685 1672542 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_4099 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1671685..1672542) Burkholderia ambifaria MC40-6 6179267 YP_001811237.1 CDS BamMC406_4565 NC_010552.1 1672539 1673450 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_4100 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1672539..1673450) Burkholderia ambifaria MC40-6 6180029 YP_001811238.1 CDS BamMC406_4566 NC_010552.1 1673470 1673997 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_4101 cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein complement(1673470..1673997) Burkholderia ambifaria MC40-6 6180030 YP_001811239.1 CDS BamMC406_4567 NC_010552.1 1674037 1674807 R member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria; short chain dehydrogenase complement(1674037..1674807) Burkholderia ambifaria MC40-6 6180031 YP_001811240.1 CDS BamMC406_4568 NC_010552.1 1674800 1675870 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_4103 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(1674800..1675870) Burkholderia ambifaria MC40-6 6181371 YP_001811241.1 CDS BamMC406_4569 NC_010552.1 1675925 1676236 R KEGG: bam:Bamb_4104 hypothetical protein; hypothetical protein complement(1675925..1676236) Burkholderia ambifaria MC40-6 6181372 YP_001811242.1 CDS BamMC406_4570 NC_010552.1 1676238 1676555 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_4105 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(1676238..1676555) Burkholderia ambifaria MC40-6 6181373 YP_001811243.1 CDS BamMC406_4571 NC_010552.1 1677006 1678085 D PFAM: porin Gram-negative type; KEGG: bam:Bamb_4106 porin, gram-negative type; porin 1677006..1678085 Burkholderia ambifaria MC40-6 6180746 YP_001811244.1 CDS BamMC406_4572 NC_010552.1 1678186 1679130 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_4107 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1678186..1679130) Burkholderia ambifaria MC40-6 6180747 YP_001811245.1 CDS BamMC406_4573 NC_010552.1 1679488 1679694 R KEGG: bam:Bamb_4108 hypothetical protein; hypothetical protein complement(1679488..1679694) Burkholderia ambifaria MC40-6 6180748 YP_001811246.1 CDS BamMC406_4574 NC_010552.1 1680021 1680674 R PFAM: 2OG-Fe(II) oxygenase; KEGG: bam:Bamb_4109 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(1680021..1680674) Burkholderia ambifaria MC40-6 6179531 YP_001811247.1 CDS BamMC406_4575 NC_010552.1 1680824 1681975 R PFAM: metallophosphoesterase; KEGG: bam:Bamb_4110 metallophosphoesterase; metallophosphoesterase complement(1680824..1681975) Burkholderia ambifaria MC40-6 6179532 YP_001811248.1 CDS BamMC406_4576 NC_010552.1 1682450 1682743 D KEGG: bam:Bamb_4111 hypothetical protein; hypothetical protein 1682450..1682743 Burkholderia ambifaria MC40-6 6179533 YP_001811249.1 CDS BamMC406_4577 NC_010552.1 1682740 1683789 D with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance protein MdtN 1682740..1683789 Burkholderia ambifaria MC40-6 6180714 YP_001811250.1 CDS BamMC406_4578 NC_010552.1 1683770 1685869 D KEGG: bam:Bamb_4113 fusaric acid resistance protein conserved region; fusaric acid resistance protein 1683770..1685869 Burkholderia ambifaria MC40-6 6180715 YP_001811251.1 CDS BamMC406_4579 NC_010552.1 1685856 1687403 D PFAM: outer membrane efflux protein; KEGG: bam:Bamb_4114 outer membrane efflux protein; outer membrane efflux protein 1685856..1687403 Burkholderia ambifaria MC40-6 6180716 YP_001811252.1 CDS BamMC406_4580 NC_010552.1 1687736 1688443 D PFAM: MgtC/SapB transporter; KEGG: bam:Bamb_4115 MgtC/SapB transporter; MgtC/SapB transporter 1687736..1688443 Burkholderia ambifaria MC40-6 6179663 YP_001811253.1 CDS BamMC406_4581 NC_010552.1 1688500 1689219 R PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: bam:Bamb_4116 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1688500..1689219) Burkholderia ambifaria MC40-6 6179664 YP_001811254.1 CDS BamMC406_4582 NC_010552.1 1689293 1689736 D KEGG: bam:Bamb_4117 hypothetical protein; hypothetical protein 1689293..1689736 Burkholderia ambifaria MC40-6 6179665 YP_001811255.1 CDS BamMC406_4583 NC_010552.1 1689943 1690551 D PFAM: autoinducer synthesis protein; KEGG: bam:Bamb_4118 autoinducer synthesis protein; autoinducer synthesis protein 1689943..1690551 Burkholderia ambifaria MC40-6 6179647 YP_001811256.1 CDS BamMC406_4584 NC_010552.1 1690602 1691363 D KEGG: bam:Bamb_4119 hypothetical protein; hypothetical protein 1690602..1691363 Burkholderia ambifaria MC40-6 6179648 YP_001811257.1 CDS BamMC406_4586 NC_010552.1 1692674 1693324 R PFAM: GTP cyclohydrolase II; KEGG: bam:Bamb_4122 GTP cyclohydrolase II; GTP cyclohydrolase II complement(1692674..1693324) Burkholderia ambifaria MC40-6 6179386 YP_001811258.1 CDS BamMC406_4587 NC_010552.1 1693502 1693963 D PFAM: CBS domain containing protein; KEGG: bam:Bamb_4123 putative signal-transduction protein with CBS domains; signal-transduction protein 1693502..1693963 Burkholderia ambifaria MC40-6 6181123 YP_001811259.1 CDS BamMC406_4588 NC_010552.1 1694114 1694443 R KEGG: bam:Bamb_4124 hypothetical protein; hypothetical protein complement(1694114..1694443) Burkholderia ambifaria MC40-6 6181124 YP_001811260.1 CDS BamMC406_4589 NC_010552.1 1694957 1695355 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bam:Bamb_4125 GreA/GreB family elongation factor; GreA/GreB family elongation factor 1694957..1695355 Burkholderia ambifaria MC40-6 6180336 YP_001811261.1 CDS BamMC406_4590 NC_010552.1 1695544 1696662 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_4126 porin, gram-negative type; porin complement(1695544..1696662) Burkholderia ambifaria MC40-6 6180337 YP_001811262.1 CDS BamMC406_4591 NC_010552.1 1697274 1697648 D KEGG: bam:Bamb_4127 hypothetical protein; hypothetical protein 1697274..1697648 Burkholderia ambifaria MC40-6 6180338 YP_001811263.1 CDS BamMC406_4592 NC_010552.1 1698100 1698285 D KEGG: bur:Bcep18194_B1013 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1698100..1698285 Burkholderia ambifaria MC40-6 6181494 YP_001811264.1 CDS BamMC406_4593 NC_010552.1 1698329 1699084 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B1012 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1698329..1699084 Burkholderia ambifaria MC40-6 6181495 YP_001811265.1 CDS BamMC406_4594 NC_010552.1 1699401 1699877 D TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bam:Bamb_4130 transcriptional regulator, MerR family; MerR family transcriptional regulator 1699401..1699877 Burkholderia ambifaria MC40-6 6181496 YP_001811266.1 CDS BamMC406_4595 NC_010552.1 1699918 1700679 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4131 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1699918..1700679) Burkholderia ambifaria MC40-6 6180453 YP_001811267.1 CDS BamMC406_4596 NC_010552.1 1700794 1701705 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4132 transcriptional regulator, LysR family; LysR family transcriptional regulator 1700794..1701705 Burkholderia ambifaria MC40-6 6180454 YP_001811268.1 CDS BamMC406_4597 NC_010552.1 1701741 1702394 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_4133 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1701741..1702394) Burkholderia ambifaria MC40-6 6180455 YP_001811269.1 CDS BamMC406_4598 NC_010552.1 1702542 1703843 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_4134 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1702542..1703843 Burkholderia ambifaria MC40-6 6180976 YP_001811270.1 CDS BamMC406_4599 NC_010552.1 1703875 1704264 D KEGG: bam:Bamb_4135 hypothetical protein; hypothetical protein 1703875..1704264 Burkholderia ambifaria MC40-6 6180977 YP_001811271.1 CDS BamMC406_4600 NC_010552.1 1704261 1705589 R PFAM: sodium:dicarboxylate symporter; KEGG: bam:Bamb_4136 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1704261..1705589) Burkholderia ambifaria MC40-6 6180978 YP_001811272.1 CDS BamMC406_4601 NC_010552.1 1705766 1707517 R KEGG: bam:Bamb_4137 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1705766..1707517) Burkholderia ambifaria MC40-6 6180734 YP_001811273.1 CDS BamMC406_4602 NC_010552.1 1707852 1708730 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bam:Bamb_4138 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1707852..1708730 Burkholderia ambifaria MC40-6 6180735 YP_001811274.1 CDS BamMC406_4603 NC_010552.1 1708851 1709021 R KEGG: rme:Rmet_0637 hypothetical protein; hypothetical protein complement(1708851..1709021) Burkholderia ambifaria MC40-6 6180736 YP_001811275.1 CDS BamMC406_4604 NC_010552.1 1709108 1710454 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4139 ABC transporter related; ABC transporter-like protein complement(1709108..1710454) Burkholderia ambifaria MC40-6 6181156 YP_001811276.1 CDS BamMC406_4605 NC_010552.1 1710466 1712220 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4140 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1710466..1712220) Burkholderia ambifaria MC40-6 6181157 YP_001811277.1 CDS BamMC406_4606 NC_010552.1 1712271 1712408 R hypothetical protein complement(1712271..1712408) Burkholderia ambifaria MC40-6 6181158 YP_001811278.1 CDS BamMC406_4607 NC_010552.1 1712664 1713608 D PFAM: metallophosphoesterase; KEGG: bam:Bamb_4141 metallophosphoesterase; metallophosphoesterase 1712664..1713608 Burkholderia ambifaria MC40-6 6180498 YP_001811279.1 CDS BamMC406_4608 NC_010552.1 1713632 1713973 D PFAM: blue (type 1) copper domain protein; KEGG: bam:Bamb_4142 blue (type 1) copper domain protein; blue (type1) copper domain-containing protein 1713632..1713973 Burkholderia ambifaria MC40-6 6180499 YP_001811280.1 CDS BamMC406_4609 NC_010552.1 1714089 1715228 D PFAM: Patatin; KEGG: bam:Bamb_4143 patatin; patatin 1714089..1715228 Burkholderia ambifaria MC40-6 6180500 YP_001811281.1 CDS BamMC406_4610 NC_010552.1 1715278 1715982 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_4144 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1715278..1715982) Burkholderia ambifaria MC40-6 6179850 YP_001811282.1 CDS BamMC406_4611 NC_010552.1 1716103 1717002 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4145 transcriptional regulator, LysR family; LysR family transcriptional regulator 1716103..1717002 Burkholderia ambifaria MC40-6 6179851 YP_001811283.1 CDS BamMC406_4613 NC_010552.1 1717333 1718001 D PFAM: integrase domain protein SAM domain protein; KEGG: bur:Bcep18194_A4983 phage integrase; integrase domain-containing protein 1717333..1718001 Burkholderia ambifaria MC40-6 6179387 YP_001811284.1 CDS BamMC406_4614 NC_010552.1 1718169 1718726 D KEGG: bur:Bcep18194_A4983 phage integrase; phage integrase 1718169..1718726 Burkholderia ambifaria MC40-6 6179601 YP_001811285.1 CDS BamMC406_4615 NC_010552.1 1719040 1719696 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: azc:AZC_1361 high similarity to two-component response regulator; two component LuxR family transcriptional regulator 1719040..1719696 Burkholderia ambifaria MC40-6 6179602 YP_001811286.1 CDS BamMC406_4616 NC_010552.1 1719815 1725325 D KEGG: bpt:Bpet3930 serine/threonine kinase with two-component sensor domain; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; serine/threonine protein kinase; PAS sensor protein 1719815..1725325 Burkholderia ambifaria MC40-6 6181389 YP_001811287.1 CDS BamMC406_4617 NC_010552.1 1725525 1726685 D Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate; formate dehydrogenase 1725525..1726685 Burkholderia ambifaria MC40-6 6181390 YP_001811288.1 CDS BamMC406_4618 NC_010552.1 1726818 1727492 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bch:Bcen2424_5186 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1726818..1727492) Burkholderia ambifaria MC40-6 6181391 YP_001811289.1 CDS BamMC406_4619 NC_010552.1 1727482 1729671 R KEGG: pfo:Pfl_2251 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(1727482..1729671) Burkholderia ambifaria MC40-6 6179729 YP_001811290.1 CDS BamMC406_4620 NC_010552.1 1729793 1730179 R PFAM: response regulator receiver; KEGG: bcn:Bcen_3179 response regulator receiver protein; response regulator receiver protein complement(1729793..1730179) Burkholderia ambifaria MC40-6 6179730 YP_001811291.1 CDS BamMC406_4621 NC_010552.1 1730331 1731152 R PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B2381 putative non-heme chloroperoxidase; alpha/beta hydrolase fold protein complement(1730331..1731152) Burkholderia ambifaria MC40-6 6179731 YP_001811292.1 CDS BamMC406_4622 NC_010552.1 1731499 1733832 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bvi:Bcep1808_3758 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase alpha (molybdopterin) subunit 1731499..1733832 Burkholderia ambifaria MC40-6 6179428 YP_001811293.1 CDS BamMC406_4623 NC_010552.1 1734070 1735734 D PFAM: cytochrome c oxidase subunit I; KEGG: bte:BTH_II1618 probable cytochrome c oxidase subunit transmembrane protein; cytochrome-c oxidase 1734070..1735734 Burkholderia ambifaria MC40-6 6179429 YP_001811294.1 CDS BamMC406_4624 NC_010552.1 1735736 1736335 D PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: bte:BTH_II1619 FixOc; cytochrome C oxidase mono-heme subunit/FixO 1735736..1736335 Burkholderia ambifaria MC40-6 6179430 YP_001811295.1 CDS BamMC406_4625 NC_010552.1 1736332 1736925 D PFAM: cytochrome c class I; KEGG: rso:RS02321 probable transmembrane protein; cytochrome c class I 1736332..1736925 Burkholderia ambifaria MC40-6 6180324 YP_001811296.1 CDS BamMC406_4626 NC_010552.1 1736940 1739204 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bte:BTH_II1621 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1736940..1739204 Burkholderia ambifaria MC40-6 6180325 YP_001811297.1 CDS BamMC406_4627 NC_010552.1 1739201 1740445 D PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: bte:BTH_II1622 sulfite:cytochrome c oxidoreductase subunit A; molybdopterin binding oxidoreductase 1739201..1740445 Burkholderia ambifaria MC40-6 6180326 YP_001811298.1 CDS BamMC406_4628 NC_010552.1 1740460 1740894 D KEGG: swi:Swit_0948 hypothetical protein; hypothetical protein 1740460..1740894 Burkholderia ambifaria MC40-6 6180663 YP_001811299.1 CDS BamMC406_4629 NC_010552.1 1741099 1741440 D KEGG: bvi:Bcep1808_3761 hypothetical protein; hypothetical protein 1741099..1741440 Burkholderia ambifaria MC40-6 6180664 YP_001811300.1 CDS BamMC406_4630 NC_010552.1 1741538 1742446 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_3762 transcriptional regulator, LysR family; LysR family transcriptional regulator 1741538..1742446 Burkholderia ambifaria MC40-6 6180665 YP_001811301.1 CDS BamMC406_4631 NC_010552.1 1742482 1742907 R KEGG: bvi:Bcep1808_3763 hypothetical protein; hypothetical protein complement(1742482..1742907) Burkholderia ambifaria MC40-6 6180817 YP_001811302.1 CDS BamMC406_4632 NC_010552.1 1743159 1744109 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bvi:Bcep1808_3764 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(1743159..1744109) Burkholderia ambifaria MC40-6 6180818 YP_001811303.1 CDS BamMC406_4633 NC_010552.1 1744746 1745714 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_4581 transcriptional regulator, LysR family; LysR family transcriptional regulator 1744746..1745714 Burkholderia ambifaria MC40-6 6180819 YP_001811304.1 CDS BamMC406_4634 NC_010552.1 1745779 1746516 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpt:Bpet3662 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1745779..1746516) Burkholderia ambifaria MC40-6 6180052 YP_001811305.1 CDS BamMC406_4635 NC_010552.1 1746818 1748140 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bmu:Bmul_5184 histidine kinase; histidine kinase 1746818..1748140 Burkholderia ambifaria MC40-6 6180053 YP_001811306.1 CDS BamMC406_4636 NC_010552.1 1748137 1749414 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_5758 major facilitator superfamily MFS_1; major facilitator transporter 1748137..1749414 Burkholderia ambifaria MC40-6 6180054 YP_001811307.1 CDS BamMC406_4637 NC_010552.1 1749628 1750659 D KEGG: sen:SACE_4075 hypothetical protein; hypothetical protein 1749628..1750659 Burkholderia ambifaria MC40-6 6180755 YP_001811308.1 CDS BamMC406_4638 NC_010552.1 1750760 1751848 D TIGRFAM: high-affinity nickel-transporter; KEGG: sma:SAV560 high-affinity nickel-transport protein; high-affinity nickel-transporter 1750760..1751848 Burkholderia ambifaria MC40-6 6180756 YP_001811309.1 CDS BamMC406_4639 NC_010552.1 1751893 1752798 D PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: sme:SMb20492 putative short chain oxidoreductase protein; short-chain dehydrogenase/reductase SDR 1751893..1752798 Burkholderia ambifaria MC40-6 6180757 YP_001811310.1 CDS BamMC406_4640 NC_010552.1 1752943 1753683 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_A5811 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1752943..1753683 Burkholderia ambifaria MC40-6 6179344 YP_001811311.1 CDS BamMC406_4641 NC_010552.1 1753840 1754616 R PFAM: extracellular solute-binding protein family 1; KEGG: bvi:Bcep1808_3765 hypothetical protein; extracellular solute-binding protein complement(1753840..1754616) Burkholderia ambifaria MC40-6 6179345 YP_001811312.1 CDS BamMC406_4642 NC_010552.1 1754709 1755695 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(1754709..1755695) Burkholderia ambifaria MC40-6 6179346 YP_001811313.1 CDS BamMC406_4643 NC_010552.1 1755805 1756956 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: bvi:Bcep1808_3767 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(1755805..1756956) Burkholderia ambifaria MC40-6 6180687 YP_001811314.1 CDS BamMC406_4644 NC_010552.1 1757159 1757695 R PFAM: cytochrome B561; KEGG: xac:XAC3991 cytochrome b561; cytochrome B561 complement(1757159..1757695) Burkholderia ambifaria MC40-6 6180688 YP_001811315.1 CDS BamMC406_4645 NC_010552.1 1757692 1758777 R PFAM: Catalase domain protein; KEGG: bxe:Bxe_B1668 putative catalase; catalase domain-containing protein complement(1757692..1758777) Burkholderia ambifaria MC40-6 6179595 YP_001811316.1 CDS BamMC406_4646 NC_010552.1 1758783 1759496 D KEGG: bvi:Bcep1808_3757 hypothetical protein; hypothetical protein 1758783..1759496 Burkholderia ambifaria MC40-6 6179596 YP_001811317.1 CDS BamMC406_4647 NC_010552.1 1760370 1760633 D PFAM: transposase IS3/IS911 family protein; KEGG: bpd:BURPS668_2134 transposase subfamily; transposase IS3/IS911 family protein 1760370..1760633 Burkholderia ambifaria MC40-6 6179597 YP_001811318.1 CDS BamMC406_4648 NC_010552.1 1760729 1761364 D PFAM: Integrase catalytic region; KEGG: bmu:Bmul_4719 integrase catalytic region; integrase catalytic subunit 1760729..1761364 Burkholderia ambifaria MC40-6 6180979 YP_001811319.1 CDS BamMC406_4649 NC_010552.1 1761560 1762873 R PFAM: sodium:dicarboxylate symporter; KEGG: bpd:BURPS668_1832 transporter, dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family; sodium:dicarboxylate symporter complement(1761560..1762873) Burkholderia ambifaria MC40-6 6180980 YP_001811320.1 CDS BamMC406_4650 NC_010552.1 1762920 1763834 R PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: bpe:BP0354 probable ornithine cyclodeaminase; ornithine cyclodeaminase/mu-crystallin complement(1762920..1763834) Burkholderia ambifaria MC40-6 6180981 YP_001811321.1 CDS BamMC406_4651 NC_010552.1 1763831 1764769 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: bch:Bcen2424_6520 phenazine biosynthesis protein PhzF family; PhzF family phenazine biosynthesis protein complement(1763831..1764769) Burkholderia ambifaria MC40-6 6181099 YP_001811322.1 CDS BamMC406_4652 NC_010552.1 1765019 1765888 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bch:Bcen2424_6519 transcriptional regulator, AraC family; AraC family transcriptional regulator 1765019..1765888 Burkholderia ambifaria MC40-6 6181100 YP_001811323.1 CDS BamMC406_4653 NC_010552.1 1766786 1768207 R PFAM: Aldehyde Dehydrogenase_; KEGG: sme:SMc01971 putative aldehyde dehydrogenase protein; aldehyde dehydrogenase complement(1766786..1768207) Burkholderia ambifaria MC40-6 6181101 YP_001811324.1 CDS BamMC406_4654 NC_010552.1 1768425 1769120 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_0009 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1768425..1769120 Burkholderia ambifaria MC40-6 6180675 YP_001811325.1 CDS BamMC406_4655 NC_010552.1 1769213 1769935 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: xau:Xaut_0010 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1769213..1769935) Burkholderia ambifaria MC40-6 6180676 YP_001811326.1 CDS BamMC406_4656 NC_010552.1 1769995 1771005 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_2437 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase complement(1769995..1771005) Burkholderia ambifaria MC40-6 6180677 YP_001811327.1 CDS BamMC406_4657 NC_010552.1 1771008 1772621 R PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: smd:Smed_2450 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(1771008..1772621) Burkholderia ambifaria MC40-6 6180123 YP_001811328.1 CDS BamMC406_4658 NC_010552.1 1772917 1774410 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_3018 D-ribose transport system ATP-binding protein; ABC transporter-like protein 1772917..1774410 Burkholderia ambifaria MC40-6 6180124 YP_001811329.1 CDS BamMC406_4659 NC_010552.1 1774410 1775405 D PFAM: inner-membrane translocator; KEGG: mes:Meso_3707 inner-membrane translocator; monosaccharide-transporting ATPase 1774410..1775405 Burkholderia ambifaria MC40-6 6180125 YP_001811330.1 CDS BamMC406_4660 NC_010552.1 1775488 1776741 D KEGG: vei:Veis_2079 periplasmic binding protein/LacI transcriptional regulator; sugar ABC transporter periplasmic components-like protein 1775488..1776741 Burkholderia ambifaria MC40-6 6180845 YP_001811331.1 CDS BamMC406_4661 NC_010552.1 1776827 1777582 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2472 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1776827..1777582 Burkholderia ambifaria MC40-6 6180846 YP_001811332.1 CDS BamMC406_4662 NC_010552.1 1777665 1779146 R TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bxe:Bxe_B1976 succinic semialdehyde dehydrogenase; succinic semialdehyde dehydrogenase complement(1777665..1779146) Burkholderia ambifaria MC40-6 6180847 YP_001811333.1 CDS BamMC406_4663 NC_010552.1 1779316 1780302 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: xau:Xaut_2041 transketolase central region; transketolase central region complement(1779316..1780302) Burkholderia ambifaria MC40-6 6179474 YP_001811334.1 CDS BamMC406_4664 NC_010552.1 1780305 1781174 R PFAM: Transketolase domain protein; KEGG: xau:Xaut_2042 transketolase domain protein; transketolase domain-containing protein complement(1780305..1781174) Burkholderia ambifaria MC40-6 6179475 YP_001811335.1 CDS BamMC406_4665 NC_010552.1 1781415 1782245 D PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: xau:Xaut_1616 shikimate dehydrogenase substrate binding domain protein; shikimate dehydrogenase substrate binding subunit 1781415..1782245 Burkholderia ambifaria MC40-6 6179476 YP_001811336.1 CDS BamMC406_4666 NC_010552.1 1782423 1783505 D PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: xau:Xaut_0011 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1782423..1783505 Burkholderia ambifaria MC40-6 6180842 YP_001811337.1 CDS BamMC406_4667 NC_010552.1 1783567 1784868 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_1788 major facilitator superfamily MFS_1; major facilitator transporter 1783567..1784868 Burkholderia ambifaria MC40-6 6180843 YP_001811338.1 CDS BamMC406_4668 NC_010552.1 1785084 1785425 D KEGG: bch:Bcen2424_6071 hypothetical protein; hypothetical protein 1785084..1785425 Burkholderia ambifaria MC40-6 6180844 YP_001811339.1 CDS BamMC406_4669 NC_010552.1 1785719 1786918 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bch:Bcen2424_6072 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1785719..1786918 Burkholderia ambifaria MC40-6 6181289 YP_001811340.1 CDS BamMC406_4670 NC_010552.1 1786915 1790106 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bch:Bcen2424_6073 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1786915..1790106 Burkholderia ambifaria MC40-6 6181290 YP_001811341.1 CDS BamMC406_4671 NC_010552.1 1790103 1791497 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bch:Bcen2424_6074 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 1790103..1791497 Burkholderia ambifaria MC40-6 6181291 YP_001811342.1 CDS BamMC406_4672 NC_010552.1 1791621 1792523 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_6075 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1791621..1792523) Burkholderia ambifaria MC40-6 6180404 YP_001811343.1 CDS BamMC406_4673 NC_010552.1 1792950 1793336 R KEGG: rru:Rru_A0538 hypothetical protein; hypothetical protein complement(1792950..1793336) Burkholderia ambifaria MC40-6 6180405 YP_001811344.1 CDS BamMC406_4674 NC_010552.1 1793567 1793875 D SMART: regulatory protein ArsR; KEGG: bam:Bamb_4149 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1793567..1793875 Burkholderia ambifaria MC40-6 6179580 YP_001811345.1 CDS BamMC406_4675 NC_010552.1 1793948 1795009 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bam:Bamb_4150 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 1793948..1795009 Burkholderia ambifaria MC40-6 6179581 YP_001811346.1 CDS BamMC406_4676 NC_010552.1 1795025 1795501 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4151 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(1795025..1795501) Burkholderia ambifaria MC40-6 6179582 YP_001811347.1 CDS BamMC406_4677 NC_010552.1 1795637 1796248 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_4152 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1795637..1796248 Burkholderia ambifaria MC40-6 6181452 YP_001811348.1 CDS BamMC406_4678 NC_010552.1 1796298 1797218 R PFAM: phosphatidylinositol-specific phospholipase C X region; KEGG: bam:Bamb_4154 phosphatidylinositol diacylglycerol-lyase; phosphatidylinositol diacylglycerol-lyase complement(1796298..1797218) Burkholderia ambifaria MC40-6 6181453 YP_001811349.1 CDS BamMC406_4679 NC_010552.1 1797225 1798247 D PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bam:Bamb_4155 transcriptional regulator, LacI family; LacI family transcription regulator 1797225..1798247 Burkholderia ambifaria MC40-6 6181454 YP_001811350.1 CDS BamMC406_4680 NC_010552.1 1798257 1799117 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_B0941 ABC sugar transporter, inner membrane subunit; binding-protein-dependent transport systems inner membrane component complement(1798257..1799117) Burkholderia ambifaria MC40-6 6181056 YP_001811351.1 CDS BamMC406_4681 NC_010552.1 1799114 1799983 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4157 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1799114..1799983) Burkholderia ambifaria MC40-6 6181057 YP_001811352.1 CDS BamMC406_4682 NC_010552.1 1800018 1801256 R PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_4158 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1800018..1801256) Burkholderia ambifaria MC40-6 6181058 YP_001811353.1 CDS BamMC406_4683 NC_010552.1 1801443 1802651 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_4159 porin, gram-negative type; porin complement(1801443..1802651) Burkholderia ambifaria MC40-6 6180839 YP_001811354.1 CDS BamMC406_4684 NC_010552.1 1802823 1803761 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_4160 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1802823..1803761) Burkholderia ambifaria MC40-6 6180840 YP_001811355.1 CDS BamMC406_4685 NC_010552.1 1803822 1804406 R KEGG: bam:Bamb_4161 hypothetical protein; hypothetical protein complement(1803822..1804406) Burkholderia ambifaria MC40-6 6180841 YP_001811356.1 CDS BamMC406_4686 NC_010552.1 1804403 1805905 R PFAM: amino acid permease-associated region; KEGG: bam:Bamb_4162 amino acid permease-associated region; amino acid permease-associated protein complement(1804403..1805905) Burkholderia ambifaria MC40-6 6179204 YP_001811357.1 CDS BamMC406_4687 NC_010552.1 1806168 1807508 R PFAM: aminotransferase class-III; KEGG: bam:Bamb_4163 hypothetical protein; hypothetical protein complement(1806168..1807508) Burkholderia ambifaria MC40-6 6179205 YP_001811358.1 CDS BamMC406_4688 NC_010552.1 1807581 1809083 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4164 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase complement(1807581..1809083) Burkholderia ambifaria MC40-6 6179206 YP_001811359.1 CDS BamMC406_4689 NC_010552.1 1809348 1810079 R PFAM: regulatory protein LuxR; KEGG: bam:Bamb_4166 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1809348..1810079) Burkholderia ambifaria MC40-6 6180363 YP_001811360.1 CDS BamMC406_4690 NC_010552.1 1810238 1811113 R PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: bam:Bamb_4167 protein of unknown function, zinc metallopeptidase putative; hypothetical protein complement(1810238..1811113) Burkholderia ambifaria MC40-6 6180364 YP_001811361.1 CDS BamMC406_4691 NC_010552.1 1811547 1812338 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4169 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1811547..1812338 Burkholderia ambifaria MC40-6 6180365 YP_001811362.1 CDS BamMC406_4692 NC_010552.1 1812546 1813589 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4170 transcriptional regulator, LysR family; LysR family transcriptional regulator 1812546..1813589 Burkholderia ambifaria MC40-6 6179131 YP_001811363.1 CDS BamMC406_4693 NC_010552.1 1813689 1814366 D KEGG: bam:Bamb_4171 hypothetical protein; hypothetical protein 1813689..1814366 Burkholderia ambifaria MC40-6 6179132 YP_001811364.1 CDS BamMC406_4694 NC_010552.1 1814454 1815773 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4172 major facilitator superfamily MFS_1; major facilitator transporter 1814454..1815773 Burkholderia ambifaria MC40-6 6179133 YP_001811365.1 CDS BamMC406_4695 NC_010552.1 1815832 1816533 D KEGG: bam:Bamb_4173 hypothetical protein; hypothetical protein 1815832..1816533 Burkholderia ambifaria MC40-6 6180315 YP_001811366.1 CDS BamMC406_4696 NC_010552.1 1816610 1817590 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bam:Bamb_4174 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1816610..1817590) Burkholderia ambifaria MC40-6 6180316 YP_001811367.1 CDS BamMC406_4697 NC_010552.1 1817690 1818589 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4175 transcriptional regulator, LysR family; LysR family transcriptional regulator 1817690..1818589 Burkholderia ambifaria MC40-6 6180317 YP_001811368.1 CDS BamMC406_4698 NC_010552.1 1818627 1819499 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4176 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1818627..1819499) Burkholderia ambifaria MC40-6 6180871 YP_001811369.1 CDS BamMC406_4699 NC_010552.1 1819658 1821118 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4177 major facilitator superfamily MFS_1; major facilitator transporter 1819658..1821118 Burkholderia ambifaria MC40-6 6180872 YP_001811370.1 CDS BamMC406_4700 NC_010552.1 1821515 1821925 D PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_4178 endoribonuclease L-PSP; endoribonuclease L-PSP 1821515..1821925 Burkholderia ambifaria MC40-6 6180873 YP_001811371.1 CDS BamMC406_4701 NC_010552.1 1821958 1822671 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4179 short chain dehydrogenase; short chain dehydrogenase complement(1821958..1822671) Burkholderia ambifaria MC40-6 6179123 YP_001811372.1 CDS BamMC406_4702 NC_010552.1 1822967 1823692 D KEGG: bam:Bamb_4180 hypothetical protein; hypothetical protein 1822967..1823692 Burkholderia ambifaria MC40-6 6179124 YP_001811373.1 CDS BamMC406_4703 NC_010552.1 1823783 1824592 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase complement(1823783..1824592) Burkholderia ambifaria MC40-6 6180848 YP_001811374.1 CDS BamMC406_4704 NC_010552.1 1824589 1825422 R KEGG: bam:Bamb_4182 hypothetical protein; hypothetical protein complement(1824589..1825422) Burkholderia ambifaria MC40-6 6180849 YP_001811375.1 CDS BamMC406_4705 NC_010552.1 1825593 1826387 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bam:Bamb_4183 transcriptional regulator, AraC family; AraC family transcriptional regulator 1825593..1826387 Burkholderia ambifaria MC40-6 6180850 YP_001811376.1 CDS BamMC406_4706 NC_010552.1 1826669 1827628 D PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: bam:Bamb_4184 protein of unknown function DUF6, transmembrane; hypothetical protein 1826669..1827628 Burkholderia ambifaria MC40-6 6180752 YP_001811377.1 CDS BamMC406_4707 NC_010552.1 1827754 1828326 D KEGG: bam:Bamb_4185 hypothetical protein; hypothetical protein 1827754..1828326 Burkholderia ambifaria MC40-6 6180753 YP_001811378.1 CDS BamMC406_4708 NC_010552.1 1828426 1828560 R PFAM: Entericidin EcnAB; KEGG: bam:Bamb_4186 entericidin EcnAB; entericidin EcnAB complement(1828426..1828560) Burkholderia ambifaria MC40-6 6180754 YP_001811379.1 CDS BamMC406_4709 NC_010552.1 1828795 1830090 D catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate; aspartate carbamoyltransferase 1828795..1830090 Burkholderia ambifaria MC40-6 6179448 YP_001811380.1 CDS BamMC406_4710 NC_010552.1 1830227 1830646 R PFAM: PilT protein domain protein; KEGG: bam:Bamb_4188 PilT protein domain protein; PilT domain-containing protein complement(1830227..1830646) Burkholderia ambifaria MC40-6 6179449 YP_001811381.1 CDS BamMC406_4711 NC_010552.1 1830643 1830918 R KEGG: bam:Bamb_4189 plasmid stability protein-like protein; plasmid stability protein-like protein complement(1830643..1830918) Burkholderia ambifaria MC40-6 6179450 YP_001811382.1 CDS BamMC406_4712 NC_010552.1 1831204 1833447 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_4190 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1831204..1833447 Burkholderia ambifaria MC40-6 6181405 YP_001811383.1 CDS BamMC406_4713 NC_010552.1 1833451 1834206 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: bam:Bamb_4191 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 1833451..1834206 Burkholderia ambifaria MC40-6 6181406 YP_001811384.1 CDS BamMC406_4714 NC_010552.1 1834203 1834886 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: bam:Bamb_4192 putative hydroxylase; putative hydroxylase 1834203..1834886 Burkholderia ambifaria MC40-6 6181407 YP_001811385.1 CDS BamMC406_4715 NC_010552.1 1835119 1835592 D KEGG: pen:PSEEN5035 hypothetical protein; hypothetical protein 1835119..1835592 Burkholderia ambifaria MC40-6 6179589 YP_001811386.1 CDS BamMC406_4716 NC_010552.1 1836071 1836307 D KEGG: bam:Bamb_4193 hypothetical protein; hypothetical protein 1836071..1836307 Burkholderia ambifaria MC40-6 6179590 YP_001811387.1 CDS BamMC406_4717 NC_010552.1 1836304 1836699 D PFAM: PilT protein domain protein; KEGG: bam:Bamb_4194 PilT protein domain protein; PilT domain-containing protein 1836304..1836699 Burkholderia ambifaria MC40-6 6179591 YP_001811388.1 CDS BamMC406_4718 NC_010552.1 1837169 1837753 D KEGG: bam:Bamb_4195 uncharacterized MobA-related protein-like protein; MobA-like protein 1837169..1837753 Burkholderia ambifaria MC40-6 6180521 YP_001811389.1 CDS BamMC406_4719 NC_010552.1 1838225 1838983 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4196 short chain dehydrogenase; short chain dehydrogenase complement(1838225..1838983) Burkholderia ambifaria MC40-6 6180522 YP_001811390.1 CDS BamMC406_4720 NC_010552.1 1838980 1840527 R PFAM: carbohydrate kinase FGGY; KEGG: bam:Bamb_4197 xylulokinase; xylulokinase complement(1838980..1840527) Burkholderia ambifaria MC40-6 6180523 YP_001811391.1 CDS BamMC406_4721 NC_010552.1 1840559 1841647 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_4198 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(1840559..1841647) Burkholderia ambifaria MC40-6 6179609 YP_001811392.1 CDS BamMC406_4722 NC_010552.1 1841697 1842704 R PFAM: inner-membrane translocator; KEGG: bam:Bamb_4199 inner-membrane translocator; monosaccharide-transporting ATPase complement(1841697..1842704) Burkholderia ambifaria MC40-6 6179610 YP_001811393.1 CDS BamMC406_4723 NC_010552.1 1842691 1844211 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4200 ABC transporter related; ABC transporter-like protein complement(1842691..1844211) Burkholderia ambifaria MC40-6 6179611 YP_001811394.1 CDS BamMC406_4724 NC_010552.1 1844274 1845239 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_4201 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(1844274..1845239) Burkholderia ambifaria MC40-6 6179770 YP_001811395.1 CDS BamMC406_4725 NC_010552.1 1845356 1846315 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_4202 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1845356..1846315) Burkholderia ambifaria MC40-6 6179771 YP_001811396.1 CDS BamMC406_4726 NC_010552.1 1846565 1847512 R KEGG: bam:Bamb_4203 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase complement(1846565..1847512) Burkholderia ambifaria MC40-6 6179772 YP_001811397.1 CDS BamMC406_4727 NC_010552.1 1847770 1849323 D PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bam:Bamb_4204 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1847770..1849323 Burkholderia ambifaria MC40-6 6179334 YP_001811398.1 CDS BamMC406_4728 NC_010552.1 1849485 1850162 R PFAM: regulatory protein LuxR; KEGG: bam:Bamb_4205 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1849485..1850162) Burkholderia ambifaria MC40-6 6179335 YP_001811399.1 CDS BamMC406_4729 NC_010552.1 1850522 1851013 D KEGG: bam:Bamb_4206 hypothetical protein; hypothetical protein 1850522..1851013 Burkholderia ambifaria MC40-6 6179336 YP_001811400.1 CDS BamMC406_4730 NC_010552.1 1851229 1852602 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bam:Bamb_4207 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(1851229..1852602) Burkholderia ambifaria MC40-6 6180692 YP_001811401.1 CDS BamMC406_4731 NC_010552.1 1852878 1853717 D KEGG: bcn:Bcen_3533 hypothetical protein; hypothetical protein 1852878..1853717 Burkholderia ambifaria MC40-6 6180693 YP_001811402.1 CDS BamMC406_4732 NC_010552.1 1853612 1854538 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: bam:Bamb_4209 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1853612..1854538) Burkholderia ambifaria MC40-6 6180639 YP_001811403.1 CDS BamMC406_4733 NC_010552.1 1854720 1855181 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_4210 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1854720..1855181 Burkholderia ambifaria MC40-6 6180640 YP_001811404.1 CDS BamMC406_4734 NC_010552.1 1855184 1857394 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_4211 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1855184..1857394 Burkholderia ambifaria MC40-6 6180641 YP_001811405.1 CDS BamMC406_4735 NC_010552.1 1857800 1858198 D PFAM: transcriptional regulator domain protein; KEGG: bam:Bamb_4213 response regulator receiver protein; winged helix family two component response transcriptional regulator 1857800..1858198 Burkholderia ambifaria MC40-6 6181013 YP_001811406.1 CDS BamMC406_4736 NC_010552.1 1858568 1859713 D TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: bam:Bamb_4214 type III secretion system apparatus protein YscQ/HrcQ; type III secretion system apparatus protein YscQ/HrcQ 1858568..1859713 Burkholderia ambifaria MC40-6 6181014 YP_001811407.1 CDS BamMC406_4737 NC_010552.1 1859717 1860391 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1859717..1860391 Burkholderia ambifaria MC40-6 6181015 YP_001811408.1 CDS BamMC406_4738 NC_010552.1 1860388 1861191 D PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_4216 lytic transglycosylase, catalytic; lytic transglycosylase 1860388..1861191 Burkholderia ambifaria MC40-6 6181473 YP_001811409.1 CDS BamMC406_4739 NC_010552.1 1861424 1874881 D KEGG: bvi:Bcep1808_5330 hypothetical protein; hypothetical protein 1861424..1874881 Burkholderia ambifaria MC40-6 6181474 YP_001811410.1 CDS BamMC406_4740 NC_010552.1 1874939 1876906 R KEGG: bam:Bamb_4217 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase complement(1874939..1876906) Burkholderia ambifaria MC40-6 6181475 YP_001811411.1 CDS BamMC406_4741 NC_010552.1 1877151 1878182 R PFAM: type III secretion exporter; KEGG: bam:Bamb_4219 type III secretion exporter; type III secretion exporter complement(1877151..1878182) Burkholderia ambifaria MC40-6 6180868 YP_001811412.1 CDS BamMC406_4742 NC_010552.1 1878207 1879016 R TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: bam:Bamb_4220 type III secretion protein SpaR/YscT/HrcT; type III secretion protein SpaR/YscT/HrcT complement(1878207..1879016) Burkholderia ambifaria MC40-6 6180869 YP_001811413.1 CDS BamMC406_4743 NC_010552.1 1879010 1879699 R KEGG: bam:Bamb_4221 hypothetical protein; hypothetical protein complement(1879010..1879699) Burkholderia ambifaria MC40-6 6180870 YP_001811414.1 CDS BamMC406_4744 NC_010552.1 1879692 1881077 R KEGG: bam:Bamb_4222 type III secretion apparatus H+-transporting two-sector ATPase; TIGRFAM: ATPase, FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; type III secretion apparatus H+-transporting two-sector ATPase complement(1879692..1881077) Burkholderia ambifaria MC40-6 6180527 YP_001811415.1 CDS BamMC406_4745 NC_010552.1 1881074 1881703 R TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; KEGG: bam:Bamb_4223 type III secretion apparatus protein, HrpE/YscL family; HrpE/YscL family type III secretion apparatus protein complement(1881074..1881703) Burkholderia ambifaria MC40-6 6180528 YP_001811416.1 CDS BamMC406_4746 NC_010552.1 1881685 1882425 R KEGG: bam:Bamb_4224 hypothetical protein; hypothetical protein complement(1881685..1882425) Burkholderia ambifaria MC40-6 6180529 YP_001811417.1 CDS BamMC406_4747 NC_010552.1 1882422 1883309 R TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: bam:Bamb_4225 type III secretion apparatus lipoprotein, YscJ/HrcJ family; YscJ/HrcJ family type III secretion apparatus lipoprotein complement(1882422..1883309) Burkholderia ambifaria MC40-6 6179373 YP_001811418.1 CDS BamMC406_4748 NC_010552.1 1883432 1883905 R KEGG: bam:Bamb_4226 hypothetical protein; hypothetical protein complement(1883432..1883905) Burkholderia ambifaria MC40-6 6179374 YP_001811419.1 CDS BamMC406_4749 NC_010552.1 1884030 1884251 R KEGG: bmu:Bmul_3742 LigA; LigA complement(1884030..1884251) Burkholderia ambifaria MC40-6 6179375 YP_001811420.1 CDS BamMC406_4750 NC_010552.1 1884400 1885758 R TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; PFAM: Forkhead-associated protein; KEGG: bam:Bamb_4227 type III secretion apparatus protein, YscD/HrpQ family; YscD/HrpQ family type III secretion apparatus protein complement(1884400..1885758) Burkholderia ambifaria MC40-6 6181177 YP_001811421.1 CDS BamMC406_4751 NC_010552.1 1885739 1887781 R TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: bam:Bamb_4228 type III secretion outer membrane pore, YscC/HrcC family; YscC/HrcC family type III secretion outer membrane protein complement(1885739..1887781) Burkholderia ambifaria MC40-6 6181178 YP_001811422.1 CDS BamMC406_4752 NC_010552.1 1887781 1888059 R TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: bmu:Bmul_3740 type III secretion protein, HrpO family; HrpO family type III secretion protein complement(1887781..1888059) Burkholderia ambifaria MC40-6 6181179 YP_001811423.1 CDS BamMC406_4753 NC_010552.1 1888056 1890260 R PFAM: type III secretion FHIPEP protein; KEGG: bam:Bamb_4230 type III secretion FHIPEP protein; type III secretion FHIPEP protein complement(1888056..1890260) Burkholderia ambifaria MC40-6 6179632 YP_001811424.1 CDS BamMC406_4754 NC_010552.1 1890499 1891332 R PFAM: regulatory protein LuxR; KEGG: bam:Bamb_4231 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1890499..1891332) Burkholderia ambifaria MC40-6 6179633 YP_001811425.1 CDS BamMC406_4755 NC_010552.1 1891613 1892518 D PFAM: regulatory protein LuxR; KEGG: bam:Bamb_4232 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 1891613..1892518 Burkholderia ambifaria MC40-6 6179634 YP_001811426.1 CDS BamMC406_4756 NC_010552.1 1892595 1894241 R KEGG: bam:Bamb_4233 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(1892595..1894241) Burkholderia ambifaria MC40-6 6179932 YP_001811427.1 CDS BamMC406_4757 NC_010552.1 1894343 1894480 R KEGG: bmu:Bmul_3735 hypothetical protein; hypothetical protein complement(1894343..1894480) Burkholderia ambifaria MC40-6 6179933 YP_001811428.1 CDS BamMC406_4758 NC_010552.1 1895545 1895817 D KEGG: bam:Bamb_4235 hypothetical protein; hypothetical protein 1895545..1895817 Burkholderia ambifaria MC40-6 6179934 YP_001811429.1 CDS BamMC406_4759 NC_010552.1 1895929 1897413 D PFAM: Carbohydrate-selective porin OprB; KEGG: bam:Bamb_4236 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 1895929..1897413 Burkholderia ambifaria MC40-6 6179986 YP_001811430.1 CDS BamMC406_4760 NC_010552.1 1897507 1899237 R PFAM: glycoside hydrolase family 37; KEGG: bam:Bamb_4237 alpha,alpha-trehalase; Alpha,alpha-trehalase complement(1897507..1899237) Burkholderia ambifaria MC40-6 6179987 YP_001811431.1 CDS BamMC406_4761 NC_010552.1 1899557 1900945 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4238 major facilitator superfamily MFS_1; major facilitator transporter 1899557..1900945 Burkholderia ambifaria MC40-6 6180351 YP_001811432.1 CDS BamMC406_4762 NC_010552.1 1901295 1902506 D PFAM: protein of unknown function DUF1006; KEGG: bam:Bamb_4239 protein of unknown function DUF1006; hypothetical protein 1901295..1902506 Burkholderia ambifaria MC40-6 6180352 YP_001811433.1 CDS BamMC406_4763 NC_010552.1 1902613 1902831 R PFAM: protein of unknown function DUF1653; KEGG: bvi:Bcep1808_5362 protein of unknown function DUF1653; hypothetical protein complement(1902613..1902831) Burkholderia ambifaria MC40-6 6180353 YP_001811434.1 CDS BamMC406_4764 NC_010552.1 1902887 1903330 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4241 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(1902887..1903330) Burkholderia ambifaria MC40-6 6180327 YP_001811435.1 CDS BamMC406_4765 NC_010552.1 1903483 1903743 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: bch:Bcen2424_4877 prevent-host-death family protein; prevent-host-death family protein 1903483..1903743 Burkholderia ambifaria MC40-6 6180328 YP_001811436.1 CDS BamMC406_4766 NC_010552.1 1903740 1904006 D TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: bur:Bcep18194_B0843 addiction module toxin, Txe/YoeB; addiction module antitoxin 1903740..1904006 Burkholderia ambifaria MC40-6 6180329 YP_001811437.1 CDS BamMC406_4767 NC_010552.1 1904126 1904749 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_4242 haloacid dehalogenase domain protein hydrolase; hydrolase 1904126..1904749 Burkholderia ambifaria MC40-6 6180598 YP_001811438.1 CDS BamMC406_4768 NC_010552.1 1905164 1905736 D KEGG: bam:Bamb_4243 hypothetical protein; hypothetical protein 1905164..1905736 Burkholderia ambifaria MC40-6 6180599 YP_001811439.1 CDS BamMC406_4769 NC_010552.1 1905855 1906454 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4244 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(1905855..1906454) Burkholderia ambifaria MC40-6 6180600 YP_001811440.1 CDS BamMC406_4770 NC_010552.1 1906553 1907467 R activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR complement(1906553..1907467) Burkholderia ambifaria MC40-6 6181237 YP_001811441.1 CDS BamMC406_4771 NC_010552.1 1907577 1908830 D catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 1907577..1908830 Burkholderia ambifaria MC40-6 6181238 YP_001811442.1 CDS BamMC406_4772 NC_010552.1 1909402 1910202 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: bam:Bamb_4248 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1909402..1910202 Burkholderia ambifaria MC40-6 6181239 YP_001811443.1 CDS BamMC406_4773 NC_010552.1 1910292 1910951 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4249 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1910292..1910951 Burkholderia ambifaria MC40-6 6180254 YP_001811444.1 CDS BamMC406_4774 NC_010552.1 1910996 1911721 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4250 ABC transporter related; ABC transporter-like protein 1910996..1911721 Burkholderia ambifaria MC40-6 6180255 YP_001811445.1 CDS BamMC406_4775 NC_010552.1 1911771 1912964 D KEGG: bam:Bamb_4251 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; cystathionine beta-lyase 1911771..1912964 Burkholderia ambifaria MC40-6 6180256 YP_001811446.1 CDS BamMC406_4776 NC_010552.1 1913052 1913396 D KEGG: bam:Bamb_4252 hypothetical protein; hypothetical protein 1913052..1913396 Burkholderia ambifaria MC40-6 6179926 YP_001811447.1 CDS BamMC406_4777 NC_010552.1 1913838 1914449 D KEGG: bam:Bamb_4253 hypothetical protein; hypothetical protein 1913838..1914449 Burkholderia ambifaria MC40-6 6179927 YP_001811448.1 CDS BamMC406_4778 NC_010552.1 1914470 1915111 D KEGG: xac:XAC1614 hypothetical protein; hypothetical protein 1914470..1915111 Burkholderia ambifaria MC40-6 6179928 YP_001811449.1 CDS BamMC406_4779 NC_010552.1 1915168 1916277 D KEGG: bam:Bamb_4253 hypothetical protein; hypothetical protein 1915168..1916277 Burkholderia ambifaria MC40-6 6179701 YP_001811450.1 CDS BamMC406_4780 NC_010552.1 1916279 1917331 D KEGG: bam:Bamb_4254 hypothetical protein; hypothetical protein 1916279..1917331 Burkholderia ambifaria MC40-6 6179702 YP_001811451.1 CDS BamMC406_4781 NC_010552.1 1917382 1918065 R PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bam:Bamb_4255 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1917382..1918065) Burkholderia ambifaria MC40-6 6179703 YP_001811452.1 CDS BamMC406_4782 NC_010552.1 1918348 1919040 D KEGG: bam:Bamb_4256 hypothetical protein; hypothetical protein 1918348..1919040 Burkholderia ambifaria MC40-6 6179492 YP_001811453.1 CDS BamMC406_4783 NC_010552.1 1919056 1919937 D KEGG: bam:Bamb_4257 hypothetical protein; hypothetical protein 1919056..1919937 Burkholderia ambifaria MC40-6 6179493 YP_001811454.1 CDS BamMC406_4784 NC_010552.1 1919921 1920367 D PFAM: glycoside hydrolase family 24; KEGG: bam:Bamb_4258 lysozyme; lysozyme 1919921..1920367 Burkholderia ambifaria MC40-6 6179494 YP_001811455.1 CDS BamMC406_4785 NC_010552.1 1920543 1921667 D KEGG: bam:Bamb_4259 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase 1920543..1921667 Burkholderia ambifaria MC40-6 6180468 YP_001811456.1 CDS BamMC406_4786 NC_010552.1 1921733 1922275 D KEGG: bam:Bamb_4260 hypothetical protein; hypothetical protein 1921733..1922275 Burkholderia ambifaria MC40-6 6180469 YP_001811457.1 CDS BamMC406_4787 NC_010552.1 1922272 1922892 D KEGG: bam:Bamb_4261 LigA; LigA 1922272..1922892 Burkholderia ambifaria MC40-6 6180470 YP_001811458.1 CDS BamMC406_4788 NC_010552.1 1923004 1923621 D KEGG: bam:Bamb_4262 hypothetical protein; hypothetical protein 1923004..1923621 Burkholderia ambifaria MC40-6 6181107 YP_001811459.1 CDS BamMC406_4789 NC_010552.1 1923692 1924309 D KEGG: bam:Bamb_4263 hypothetical protein; hypothetical protein 1923692..1924309 Burkholderia ambifaria MC40-6 6181108 YP_001811460.1 CDS BamMC406_4790 NC_010552.1 1924368 1925255 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_4264 protein of unknown function DUF6, transmembrane; hypothetical protein complement(1924368..1925255) Burkholderia ambifaria MC40-6 6180740 YP_001811461.1 CDS BamMC406_4791 NC_010552.1 1925446 1926840 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_4265 transcriptional regulator, GntR family; transcriptional regulator 1925446..1926840 Burkholderia ambifaria MC40-6 6180741 YP_001811462.1 CDS BamMC406_4792 NC_010552.1 1926883 1928316 R PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: bam:Bamb_4266 hypothetical protein; putative nicotinate phosphoribosyltransferase complement(1926883..1928316) Burkholderia ambifaria MC40-6 6180742 YP_001811463.1 CDS BamMC406_4793 NC_010552.1 1928391 1929431 R NadM-Nudix subfamily; involved in creation of nicotanimide adenine dinucleotide NAD from either biosynthetic or salvage pathways; bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase complement(1928391..1929431) Burkholderia ambifaria MC40-6 6179577 YP_001811464.1 CDS BamMC406_4794 NC_010552.1 1929617 1930069 D KEGG: bam:Bamb_4268 hypothetical protein; hypothetical protein 1929617..1930069 Burkholderia ambifaria MC40-6 6179578 YP_001811465.1 CDS BamMC406_4795 NC_010552.1 1930077 1930454 R TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: bam:Bamb_4269 S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase proenzyme complement(1930077..1930454) Burkholderia ambifaria MC40-6 6179579 YP_001811466.1 CDS BamMC406_4796 NC_010552.1 1930451 1930612 R hypothetical protein complement(1930451..1930612) Burkholderia ambifaria MC40-6 6180236 YP_001811467.1 CDS BamMC406_4797 NC_010552.1 1930612 1932069 R KEGG: bam:Bamb_4270 hypothetical protein; hypothetical protein complement(1930612..1932069) Burkholderia ambifaria MC40-6 6180237 YP_001811468.1 CDS BamMC406_4798 NC_010552.1 1932142 1933203 R PFAM: band 7 protein; KEGG: bam:Bamb_4271 putative virion core protein; hypothetical protein complement(1932142..1933203) Burkholderia ambifaria MC40-6 6180238 YP_001811469.1 CDS BamMC406_4799 NC_010552.1 1933230 1933616 R PFAM: protein of unknown function DUF350; KEGG: bam:Bamb_4272 protein of unknown function DUF350; hypothetical protein complement(1933230..1933616) Burkholderia ambifaria MC40-6 6180012 YP_001811470.1 CDS BamMC406_4800 NC_010552.1 1933753 1935267 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 1933753..1935267 Burkholderia ambifaria MC40-6 6180013 YP_001811471.1 CDS BamMC406_4801 NC_010552.1 1935267 1936886 D KEGG: bam:Bamb_4274 hypothetical protein; hypothetical protein 1935267..1936886 Burkholderia ambifaria MC40-6 6180014 YP_001811472.1 CDS BamMC406_4802 NC_010552.1 1937033 1937794 D PFAM: cell wall hydrolase/autolysin; KEGG: bam:Bamb_4275 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 1937033..1937794 Burkholderia ambifaria MC40-6 6179937 YP_001811473.1 CDS BamMC406_4803 NC_010552.1 1937845 1938234 D PFAM: protein of unknown function DUF1311; KEGG: bam:Bamb_4276 protein of unknown function DUF1311; hypothetical protein 1937845..1938234 Burkholderia ambifaria MC40-6 6179938 YP_001811474.1 CDS BamMC406_4804 NC_010552.1 1938313 1938837 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4277 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 1938313..1938837 Burkholderia ambifaria MC40-6 6179939 YP_001811475.1 CDS BamMC406_4805 NC_010552.1 1938985 1939473 D hypothetical protein 1938985..1939473 Burkholderia ambifaria MC40-6 6180348 YP_001811476.1 CDS BamMC406_4806 NC_010552.1 1939540 1940886 R PFAM: glutamine synthetase catalytic region; KEGG: bam:Bamb_4278 glutamine synthetase, catalytic region; glutamine synthetase catalytic subunit complement(1939540..1940886) Burkholderia ambifaria MC40-6 6180349 YP_001811477.1 CDS BamMC406_4807 NC_010552.1 1941034 1941591 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_4279 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1941034..1941591) Burkholderia ambifaria MC40-6 6180350 YP_001811478.1 CDS BamMC406_4808 NC_010552.1 1941608 1942897 R PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_4280 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1941608..1942897) Burkholderia ambifaria MC40-6 6180447 YP_001811479.1 CDS BamMC406_4809 NC_010552.1 1943535 1943999 D KEGG: bur:Bcep18194_A4982 hypothetical protein; hypothetical protein 1943535..1943999 Burkholderia ambifaria MC40-6 6180448 YP_001811480.1 CDS BamMC406_4811 NC_010552.1 1944948 1945898 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A4577 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1944948..1945898) Burkholderia ambifaria MC40-6 6179388 YP_001811481.1 CDS BamMC406_4812 NC_010552.1 1946015 1947535 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bch:Bcen2424_1432 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1946015..1947535 Burkholderia ambifaria MC40-6 6181383 YP_001811482.1 CDS BamMC406_4813 NC_010552.1 1948138 1950474 R PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: hau:Haur_2138 cellulose-binding family II; glycosyl hydrolase BNR repeat-containing glycosyl hydrolase complement(1948138..1950474) Burkholderia ambifaria MC40-6 6181384 YP_001811483.1 CDS BamMC406_4814 NC_010552.1 1950533 1952806 R KEGG: rso:RS01652 putative transmembrane protein; putative transmembrane protein complement(1950533..1952806) Burkholderia ambifaria MC40-6 6181385 YP_001811484.1 CDS BamMC406_4817 NC_010552.1 1954492 1955391 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4299 transcriptional regulator, LysR family; LysR family transcriptional regulator 1954492..1955391 Burkholderia ambifaria MC40-6 6181033 YP_001811485.1 CDS BamMC406_4818 NC_010552.1 1955575 1958076 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_4298 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1955575..1958076 Burkholderia ambifaria MC40-6 6180593 YP_001811486.1 CDS BamMC406_4819 NC_010552.1 1958126 1959796 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bam:Bamb_4293 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 1958126..1959796 Burkholderia ambifaria MC40-6 6180594 YP_001811487.1 CDS BamMC406_4820 NC_010552.1 1959899 1961362 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bmu:Bmul_6019 permease for cytosine/purines uracil thiamine allantoin; cytosine/purines uracil thiamine allantoin permease 1959899..1961362 Burkholderia ambifaria MC40-6 6180797 YP_001811488.1 CDS BamMC406_4822 NC_010552.1 1963013 1963231 R KEGG: pol:Bpro_0714 hypothetical protein; hypothetical protein complement(1963013..1963231) Burkholderia ambifaria MC40-6 6180964 YP_001811489.1 CDS BamMC406_4823 NC_010552.1 1963450 1964400 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bvi:Bcep1808_1638 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1963450..1964400) Burkholderia ambifaria MC40-6 6180354 YP_001811490.1 CDS BamMC406_4824 NC_010552.1 1964397 1965404 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bvi:Bcep1808_1637 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(1964397..1965404) Burkholderia ambifaria MC40-6 6180355 YP_001811491.1 CDS BamMC406_4825 NC_010552.1 1965401 1965997 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bvi:Bcep1808_1636 cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein complement(1965401..1965997) Burkholderia ambifaria MC40-6 6180356 YP_001811492.1 CDS BamMC406_4826 NC_010552.1 1965994 1966809 R PFAM: cyclase family protein; KEGG: bvi:Bcep1808_1635 cyclase family protein; cyclase family protein complement(1965994..1966809) Burkholderia ambifaria MC40-6 6179830 YP_001811493.1 CDS BamMC406_4827 NC_010552.1 1966812 1968014 R PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_1634 major facilitator superfamily MFS_1; major facilitator transporter complement(1966812..1968014) Burkholderia ambifaria MC40-6 6179831 YP_001811494.1 CDS BamMC406_4828 NC_010552.1 1968031 1969161 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bvi:Bcep1808_1633 hypothetical protein; hypothetical protein complement(1968031..1969161) Burkholderia ambifaria MC40-6 6179832 YP_001811495.1 CDS BamMC406_4829 NC_010552.1 1969197 1969556 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bvi:Bcep1808_1632 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(1969197..1969556) Burkholderia ambifaria MC40-6 6181440 YP_001811496.1 CDS BamMC406_4830 NC_010552.1 1969576 1970529 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bvi:Bcep1808_1631 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1969576..1970529) Burkholderia ambifaria MC40-6 6181441 YP_001811497.1 CDS BamMC406_4831 NC_010552.1 1970561 1971721 R KEGG: bvi:Bcep1808_1630 hypothetical protein; hypothetical protein complement(1970561..1971721) Burkholderia ambifaria MC40-6 6181442 YP_001811498.1 CDS BamMC406_4832 NC_010552.1 1971809 1972723 R KEGG: bvi:Bcep1808_1629 hypothetical protein; hypothetical protein complement(1971809..1972723) Burkholderia ambifaria MC40-6 6179508 YP_001811499.1 CDS BamMC406_4833 NC_010552.1 1973026 1973952 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_1628 transcriptional regulator, LysR family; LysR family transcriptional regulator 1973026..1973952 Burkholderia ambifaria MC40-6 6179509 YP_001811500.1 CDS BamMC406_4834 NC_010552.1 1974514 1975467 R PFAM: NmrA family protein; KEGG: bch:Bcen2424_0184 NmrA family protein; NmrA family protein complement(1974514..1975467) Burkholderia ambifaria MC40-6 6179510 YP_001811501.1 CDS BamMC406_4835 NC_010552.1 1975561 1975974 D PFAM: helix-turn-helix HxlR type; KEGG: bch:Bcen2424_0183 transcriptional regulator, HxlR family; HxlR family transcriptional regulator 1975561..1975974 Burkholderia ambifaria MC40-6 6180135 YP_001811502.1 CDS BamMC406_4836 NC_010552.1 1976331 1976768 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_4281 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1976331..1976768) Burkholderia ambifaria MC40-6 6180136 YP_001811503.1 CDS BamMC406_4837 NC_010552.1 1976765 1977694 R PFAM: homocysteine S-methyltransferase; KEGG: bam:Bamb_4282 homocysteine S-methyltransferase; homocysteine S-methyltransferase complement(1976765..1977694) Burkholderia ambifaria MC40-6 6180137 YP_001811504.1 CDS BamMC406_4838 NC_010552.1 1977799 1978968 R PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: bam:Bamb_4283 cystathionine gamma-synthase; cystathionine gamma-synthase complement(1977799..1978968) Burkholderia ambifaria MC40-6 6179877 YP_001811505.1 CDS BamMC406_4839 NC_010552.1 1979013 1979708 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4284 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(1979013..1979708) Burkholderia ambifaria MC40-6 6179878 YP_001811506.1 CDS BamMC406_4840 NC_010552.1 1979723 1980400 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4285 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(1979723..1980400) Burkholderia ambifaria MC40-6 6179879 YP_001811507.1 CDS BamMC406_4841 NC_010552.1 1980473 1981252 R PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_4286 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1980473..1981252) Burkholderia ambifaria MC40-6 6180150 YP_001811508.1 CDS BamMC406_4842 NC_010552.1 1981285 1982082 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4287 ABC transporter related; ABC transporter-like protein complement(1981285..1982082) Burkholderia ambifaria MC40-6 6180151 YP_001811509.1 CDS BamMC406_4843 NC_010552.1 1982163 1983593 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4288 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1982163..1983593) Burkholderia ambifaria MC40-6 6180152 YP_001811510.1 CDS BamMC406_4844 NC_010552.1 1983590 1984669 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(1983590..1984669) Burkholderia ambifaria MC40-6 6179841 YP_001811511.1 CDS BamMC406_4845 NC_010552.1 1984821 1985318 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_4290 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1984821..1985318) Burkholderia ambifaria MC40-6 6179842 YP_001811512.1 CDS BamMC406_4846 NC_010552.1 1985350 1985706 R KEGG: bam:Bamb_4291 hypothetical protein; hypothetical protein complement(1985350..1985706) Burkholderia ambifaria MC40-6 6179843 YP_001811513.1 CDS BamMC406_4847 NC_010552.1 1986538 1986882 R PFAM: small multidrug resistance protein; KEGG: bam:Bamb_4292 small multidrug resistance protein; small multidrug resistance protein complement(1986538..1986882) Burkholderia ambifaria MC40-6 6179242 YP_001811514.1 CDS BamMC406_4849 NC_010552.1 1987872 1988276 D PFAM: transposase IS111A/IS1328/IS1533; KEGG: bmu:Bmul_4770 transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533 1987872..1988276 Burkholderia ambifaria MC40-6 6180965 YP_001811515.1 CDS BamMC406_4850 NC_010552.1 1989449 1989562 D KEGG: bam:Bamb_4333 hypothetical protein; hypothetical protein 1989449..1989562 Burkholderia ambifaria MC40-6 6179244 YP_001811516.1 CDS BamMC406_4851 NC_010552.1 1989590 1990663 D PFAM: NHL repeat containing protein; KEGG: bam:Bamb_4334 hypothetical protein; NHL repeat-containing protein 1989590..1990663 Burkholderia ambifaria MC40-6 6181030 YP_001811517.1 CDS BamMC406_4852 NC_010552.1 1990740 1991156 D KEGG: bam:Bamb_4335 hypothetical protein; hypothetical protein 1990740..1991156 Burkholderia ambifaria MC40-6 6181031 YP_001811518.1 CDS BamMC406_4853 NC_010552.1 1991650 1991877 D KEGG: bam:Bamb_4336 hypothetical protein; hypothetical protein 1991650..1991877 Burkholderia ambifaria MC40-6 6181268 YP_001811519.1 CDS BamMC406_4854 NC_010552.1 1991874 1992452 D PFAM: protein of unknown function DUF1130; KEGG: bam:Bamb_4337 protein of unknown function DUF1130; hypothetical protein 1991874..1992452 Burkholderia ambifaria MC40-6 6181269 YP_001811520.1 CDS BamMC406_4855 NC_010552.1 1992667 1993404 D PFAM: protein of unknown function DUF81; KEGG: bam:Bamb_4338 protein of unknown function DUF81; hypothetical protein 1992667..1993404 Burkholderia ambifaria MC40-6 6181270 YP_001811521.1 CDS BamMC406_4856 NC_010552.1 1993514 1994092 R PFAM: NnrUfamily protein; KEGG: bam:Bamb_4339 NnrUfamily protein; NnrU family protein complement(1993514..1994092) Burkholderia ambifaria MC40-6 6181067 YP_001811522.1 CDS BamMC406_4857 NC_010552.1 1994332 1994757 R PFAM: TfoX domain protein; KEGG: bam:Bamb_4340 TfoX, N-terminal domain protein; TfoX domain-containing protein complement(1994332..1994757) Burkholderia ambifaria MC40-6 6181068 YP_001811523.1 CDS BamMC406_4858 NC_010552.1 1994754 1995863 R PFAM: Malate/L-lactate dehydrogenase; KEGG: bam:Bamb_4341 malate/L-lactate dehydrogenase; hypothetical protein complement(1994754..1995863) Burkholderia ambifaria MC40-6 6181069 YP_001811524.1 CDS BamMC406_4859 NC_010552.1 1995928 1997382 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bam:Bamb_4342 peptidase M20; peptidase M20 complement(1995928..1997382) Burkholderia ambifaria MC40-6 6180616 YP_001811525.1 CDS BamMC406_4860 NC_010552.1 1997950 1999476 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_4344 arginine:agmatin antiporter; arginine:agmatin antiporter 1997950..1999476 Burkholderia ambifaria MC40-6 6180617 YP_001811526.1 CDS BamMC406_4861 NC_010552.1 1999479 2001818 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: bam:Bamb_4345 lysine decarboxylase; lysine decarboxylase 1999479..2001818 Burkholderia ambifaria MC40-6 6180618 YP_001811527.1 CDS BamMC406_4862 NC_010552.1 2001885 2002706 R KEGG: bam:Bamb_4346 hypothetical protein; hypothetical protein complement(2001885..2002706) Burkholderia ambifaria MC40-6 6179923 YP_001811528.1 CDS BamMC406_4863 NC_010552.1 2003047 2003847 D PFAM: protein of unknown function DUF1460; KEGG: bam:Bamb_4347 protein of unknown function DUF1460; hypothetical protein 2003047..2003847 Burkholderia ambifaria MC40-6 6179924 YP_001811529.1 CDS ftrA NC_010552.1 2003867 2004841 R upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism; transcriptional activator FtrA complement(2003867..2004841) Burkholderia ambifaria MC40-6 6179925 YP_001811530.1 CDS BamMC406_4865 NC_010552.1 2004953 2005372 D PFAM: Rhodanese domain protein; KEGG: bam:Bamb_4349 rhodanese domain protein; rhodanese domain-containing protein 2004953..2005372 Burkholderia ambifaria MC40-6 6180684 YP_001811531.1 CDS BamMC406_4866 NC_010552.1 2005463 2005789 D KEGG: bam:Bamb_4350 hypothetical protein; hypothetical protein 2005463..2005789 Burkholderia ambifaria MC40-6 6180685 YP_001811532.1 CDS BamMC406_4867 NC_010552.1 2005805 2006986 R KEGG: bam:Bamb_4351 cytochrome P450-like protein; cytochrome P450-like protein complement(2005805..2006986) Burkholderia ambifaria MC40-6 6180686 YP_001811533.1 CDS BamMC406_4868 NC_010552.1 2007143 2007406 R KEGG: bam:Bamb_4352 hypothetical protein; hypothetical protein complement(2007143..2007406) Burkholderia ambifaria MC40-6 6180512 YP_001811534.1 CDS BamMC406_4869 NC_010552.1 2007738 2008598 R KEGG: bam:Bamb_4353 PEP phosphonomutase; PEP phosphonomutase complement(2007738..2008598) Burkholderia ambifaria MC40-6 6180513 YP_001811535.1 CDS BamMC406_4871 NC_010552.1 2008941 2009801 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bam:Bamb_4354 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(2008941..2009801) Burkholderia ambifaria MC40-6 6180966 YP_001811536.1 CDS BamMC406_4872 NC_010552.1 2009857 2010210 R PFAM: nucleic acid binding OB-fold tRNA/helicase-type; conserved hypothetical protein; KEGG: bam:Bamb_4355 conserved hypothetical protein 156; hypothetical protein complement(2009857..2010210) Burkholderia ambifaria MC40-6 6180480 YP_001811537.1 CDS BamMC406_4873 NC_010552.1 2010437 2011099 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_4356 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2010437..2011099 Burkholderia ambifaria MC40-6 6180481 YP_001811538.1 CDS BamMC406_4874 NC_010552.1 2011096 2012472 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_4357 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2011096..2012472 Burkholderia ambifaria MC40-6 6180482 YP_001811539.1 CDS BamMC406_4875 NC_010552.1 2012676 2013122 D PFAM: regulatory protein MarR; KEGG: bam:Bamb_4358 transcriptional regulator, MarR family; MarR family transcriptional regulator 2012676..2013122 Burkholderia ambifaria MC40-6 6179361 YP_001811540.1 CDS BamMC406_4876 NC_010552.1 2013161 2013529 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bam:Bamb_4359 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 2013161..2013529 Burkholderia ambifaria MC40-6 6179362 YP_001811541.1 CDS BamMC406_4877 NC_010552.1 2014317 2015210 R PFAM: beta-lactamase; KEGG: bam:Bamb_4360 beta-lactamase; beta-lactamase complement(2014317..2015210) Burkholderia ambifaria MC40-6 6179363 YP_001811542.1 CDS BamMC406_4878 NC_010552.1 2015327 2016217 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4361 transcriptional regulator, LysR family; LysR family transcriptional regulator 2015327..2016217 Burkholderia ambifaria MC40-6 6179767 YP_001811543.1 CDS BamMC406_4879 NC_010552.1 2016715 2016966 R KEGG: bam:Bamb_4362 hypothetical protein; hypothetical protein complement(2016715..2016966) Burkholderia ambifaria MC40-6 6179768 YP_001811544.1 CDS BamMC406_4880 NC_010552.1 2017065 2019287 R PFAM: Amylo-alpha-16-glucosidase; KEGG: bam:Bamb_4363 amylo-alpha-1,6-glucosidase; Amylo-alpha-16-glucosidase complement(2017065..2019287) Burkholderia ambifaria MC40-6 6179769 YP_001811545.1 CDS BamMC406_4881 NC_010552.1 2019444 2026544 R TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_4364 outer membrane autotransporter barrel domain; outer membrane autotransporter complement(2019444..2026544) Burkholderia ambifaria MC40-6 6179735 YP_001811546.1 CDS BamMC406_4882 NC_010552.1 2027277 2027936 R PFAM: protein of unknown function DUF218; KEGG: bam:Bamb_4365 protein of unknown function DUF218; hypothetical protein complement(2027277..2027936) Burkholderia ambifaria MC40-6 6179736 YP_001811547.1 CDS BamMC406_4883 NC_010552.1 2028142 2029176 R TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: bam:Bamb_4366 cell shape determining protein, MreB/Mrl family; rod shape-determining protein MreB complement(2028142..2029176) Burkholderia ambifaria MC40-6 6179499 YP_001811548.1 CDS BamMC406_4884 NC_010552.1 2029433 2031829 D PFAM: Patatin; surface antigen variable number repeat protein; KEGG: bam:Bamb_4367 patatin; patatin 2029433..2031829 Burkholderia ambifaria MC40-6 6179500 YP_001811549.1 CDS BamMC406_4885 NC_010552.1 2031908 2033038 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_4368 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2031908..2033038) Burkholderia ambifaria MC40-6 6179501 YP_001811550.1 CDS BamMC406_4886 NC_010552.1 2033103 2033813 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_4369 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2033103..2033813) Burkholderia ambifaria MC40-6 6181142 YP_001811551.1 CDS BamMC406_4887 NC_010552.1 2034036 2034950 D catalyzes the formation of glutamate from glutamine; glutaminase 2034036..2034950 Burkholderia ambifaria MC40-6 6181143 YP_001811552.1 CDS BamMC406_4888 NC_010552.1 2035119 2036039 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4371 transcriptional regulator, LysR family; LysR family transcriptional regulator 2035119..2036039 Burkholderia ambifaria MC40-6 6181144 YP_001811553.1 CDS BamMC406_4889 NC_010552.1 2036170 2036805 D PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_4372 isochorismatase hydrolase; isochorismatase hydrolase 2036170..2036805 Burkholderia ambifaria MC40-6 6179120 YP_001811554.1 CDS BamMC406_4890 NC_010552.1 2036889 2037620 R PFAM: ribonuclease T2; KEGG: bam:Bamb_4373 ribonuclease T2; ribonuclease T2 complement(2036889..2037620) Burkholderia ambifaria MC40-6 6179121 YP_001811555.1 CDS BamMC406_4891 NC_010552.1 2037802 2039205 R KEGG: bam:Bamb_4374 hypothetical protein; hypothetical protein complement(2037802..2039205) Burkholderia ambifaria MC40-6 6179122 YP_001811556.1 CDS BamMC406_4892 NC_010552.1 2039568 2040215 D KEGG: bam:Bamb_4375 hypothetical protein; hypothetical protein 2039568..2040215 Burkholderia ambifaria MC40-6 6180221 YP_001811557.1 CDS BamMC406_4893 NC_010552.1 2040287 2040844 D SMART: helix-turn-helix domain protein; KEGG: bam:Bamb_4376 transcriptional regulator, XRE family; XRE family transcriptional regulator 2040287..2040844 Burkholderia ambifaria MC40-6 6180222 YP_001811558.1 CDS BamMC406_4894 NC_010552.1 2040953 2041534 D KEGG: bam:Bamb_4377 metal-dependent phosphohydrolase; metal-dependent phosphohydrolase 2040953..2041534 Burkholderia ambifaria MC40-6 6180223 YP_001811559.1 CDS BamMC406_4895 NC_010552.1 2041593 2042321 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bur:Bcep18194_B0726 methylase involved in ubiquinone/menaquinone biosynthesis-like; type 11 methyltransferase 2041593..2042321 Burkholderia ambifaria MC40-6 6179216 YP_001811560.1 CDS BamMC406_4896 NC_010552.1 2042616 2043368 D KEGG: cdf:CD1662 hypothetical protein; hypothetical protein 2042616..2043368 Burkholderia ambifaria MC40-6 6179217 YP_001811561.1 CDS BamMC406_4897 NC_010552.1 2043413 2044951 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4378 major facilitator superfamily MFS_1; major facilitator transporter complement(2043413..2044951) Burkholderia ambifaria MC40-6 6179218 YP_001811562.1 CDS BamMC406_4899 NC_010552.1 2046106 2047245 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bam:Bamb_4380 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(2046106..2047245) Burkholderia ambifaria MC40-6 6180180 YP_001811563.1 CDS BamMC406_4900 NC_010552.1 2047242 2048033 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2047242..2048033) Burkholderia ambifaria MC40-6 6180246 YP_001811564.1 CDS BamMC406_4901 NC_010552.1 2048030 2048932 R KEGG: bam:Bamb_4382 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(2048030..2048932) Burkholderia ambifaria MC40-6 6180247 YP_001811565.1 CDS BamMC406_4902 NC_010552.1 2048951 2050480 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4383 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(2048951..2050480) Burkholderia ambifaria MC40-6 6180666 YP_001811566.1 CDS BamMC406_4903 NC_010552.1 2050588 2052294 R PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_4384 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2050588..2052294) Burkholderia ambifaria MC40-6 6180667 YP_001811567.1 CDS BamMC406_4904 NC_010552.1 2052479 2053612 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_4385 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2052479..2053612) Burkholderia ambifaria MC40-6 6180668 YP_001811568.1 CDS BamMC406_4905 NC_010552.1 2053750 2054784 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_4386 transcriptional regulator, AraC family; AraC family transcriptional regulator 2053750..2054784 Burkholderia ambifaria MC40-6 6180889 YP_001811569.1 CDS BamMC406_4906 NC_010552.1 2054907 2056493 D PFAM: protein of unknown function DUF107; KEGG: bam:Bamb_4387 protein of unknown function DUF107; hypothetical protein 2054907..2056493 Burkholderia ambifaria MC40-6 6180890 YP_001811570.1 CDS BamMC406_4907 NC_010552.1 2056490 2057263 D PFAM: band 7 protein; KEGG: bam:Bamb_4388 band 7 protein; hypothetical protein 2056490..2057263 Burkholderia ambifaria MC40-6 6180891 YP_001811571.1 CDS BamMC406_4908 NC_010552.1 2057345 2058622 R KEGG: bam:Bamb_4389 phosphoserine phosphatase; phosphoserine phosphatase complement(2057345..2058622) Burkholderia ambifaria MC40-6 6180936 YP_001811572.1 CDS BamMC406_4909 NC_010552.1 2059140 2060036 D KEGG: bam:Bamb_4390 hypothetical protein; hypothetical protein 2059140..2060036 Burkholderia ambifaria MC40-6 6180937 YP_001811573.1 CDS BamMC406_4910 NC_010552.1 2060102 2061889 D PFAM: alpha/beta hydrolase fold; short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_4391 short chain dehydrogenase; short chain dehydrogenase 2060102..2061889 Burkholderia ambifaria MC40-6 6180938 YP_001811574.1 CDS BamMC406_4911 NC_010552.1 2061924 2062829 D KEGG: bam:Bamb_4392 metal-dependent hydrolase; metal-dependent hydrolase 2061924..2062829 Burkholderia ambifaria MC40-6 6181043 YP_001811575.1 CDS BamMC406_4912 NC_010552.1 2062932 2063219 D KEGG: bam:Bamb_4393 hypothetical protein; hypothetical protein 2062932..2063219 Burkholderia ambifaria MC40-6 6181044 YP_001811576.1 CDS BamMC406_4913 NC_010552.1 2063471 2063845 D KEGG: bam:Bamb_4394 hypothetical protein; hypothetical protein 2063471..2063845 Burkholderia ambifaria MC40-6 6181455 YP_001811577.1 CDS BamMC406_4914 NC_010552.1 2064027 2064305 R KEGG: bam:Bamb_4395 hypothetical protein; hypothetical protein complement(2064027..2064305) Burkholderia ambifaria MC40-6 6181456 YP_001811578.1 CDS BamMC406_4915 NC_010552.1 2065063 2066364 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: bam:Bamb_4396 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 2065063..2066364 Burkholderia ambifaria MC40-6 6181457 YP_001811579.1 CDS BamMC406_4916 NC_010552.1 2066438 2067289 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4397 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2066438..2067289) Burkholderia ambifaria MC40-6 6179737 YP_001811580.1 CDS BamMC406_4917 NC_010552.1 2067490 2068020 D KEGG: bam:Bamb_4398 hypothetical protein; hypothetical protein 2067490..2068020 Burkholderia ambifaria MC40-6 6179738 YP_001811581.1 CDS BamMC406_4918 NC_010552.1 2068034 2068360 D KEGG: bam:Bamb_4399 hypothetical protein; hypothetical protein 2068034..2068360 Burkholderia ambifaria MC40-6 6179739 YP_001811582.1 CDS BamMC406_4919 NC_010552.1 2068364 2069227 D PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_4400 beta-lactamase domain protein; beta-lactamase domain-containing protein 2068364..2069227 Burkholderia ambifaria MC40-6 6181040 YP_001811583.1 CDS BamMC406_4920 NC_010552.1 2069360 2069647 R KEGG: bam:Bamb_4401 hypothetical protein; hypothetical protein complement(2069360..2069647) Burkholderia ambifaria MC40-6 6181041 YP_001811584.1 CDS BamMC406_4921 NC_010552.1 2069893 2070084 R KEGG: bam:Bamb_4402 hypothetical protein; hypothetical protein complement(2069893..2070084) Burkholderia ambifaria MC40-6 6181042 YP_001811585.1 CDS BamMC406_4922 NC_010552.1 2070609 2072498 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_4403 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 2070609..2072498 Burkholderia ambifaria MC40-6 6180094 YP_001811586.1 CDS BamMC406_4923 NC_010552.1 2072580 2072882 D PFAM: ferredoxin; KEGG: bam:Bamb_4404 ferredoxin; ferredoxin 2072580..2072882 Burkholderia ambifaria MC40-6 6180095 YP_001811587.1 CDS BamMC406_4924 NC_010552.1 2072939 2073433 D KEGG: bam:Bamb_4405 hypothetical protein; hypothetical protein 2072939..2073433 Burkholderia ambifaria MC40-6 6180096 YP_001811588.1 CDS BamMC406_4925 NC_010552.1 2073526 2073903 D KEGG: bam:Bamb_4406 hypothetical protein; hypothetical protein 2073526..2073903 Burkholderia ambifaria MC40-6 6179821 YP_001811589.1 CDS BamMC406_4926 NC_010552.1 2074127 2074492 D PFAM: copper resistance protein CopC; KEGG: bam:Bamb_4407 copper resistance protein CopC; copper resistance protein CopC 2074127..2074492 Burkholderia ambifaria MC40-6 6179822 YP_001811590.1 CDS BamMC406_4927 NC_010552.1 2074536 2074982 D PFAM: protein of unknown function DUF461; KEGG: bam:Bamb_4408 protein of unknown function DUF461; hypothetical protein 2074536..2074982 Burkholderia ambifaria MC40-6 6179823 YP_001811591.1 CDS BamMC406_4928 NC_010552.1 2075016 2075192 D KEGG: bch:Bcen2424_4985 hypothetical protein; hypothetical protein 2075016..2075192 Burkholderia ambifaria MC40-6 6180944 YP_001811592.1 CDS BamMC406_4929 NC_010552.1 2075218 2076633 R SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: bam:Bamb_4410 serine/threonine protein kinase; serine/threonine protein kinase complement(2075218..2076633) Burkholderia ambifaria MC40-6 6180945 YP_001811593.1 CDS BamMC406_4930 NC_010552.1 2076860 2077858 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: bam:Bamb_4411 transketolase, central region; transketolase central region complement(2076860..2077858) Burkholderia ambifaria MC40-6 6180181 YP_001811594.1 CDS BamMC406_4931 NC_010552.1 2077855 2078700 R PFAM: Transketolase domain protein; KEGG: bam:Bamb_4412 transketolase domain protein; transketolase domain-containing protein complement(2077855..2078700) Burkholderia ambifaria MC40-6 6179355 YP_001811595.1 CDS BamMC406_4932 NC_010552.1 2078740 2080065 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4413 major facilitator superfamily MFS_1; major facilitator transporter complement(2078740..2080065) Burkholderia ambifaria MC40-6 6179356 YP_001811596.1 CDS BamMC406_4933 NC_010552.1 2080140 2080889 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4414 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2080140..2080889) Burkholderia ambifaria MC40-6 6179357 YP_001811597.1 CDS BamMC406_4934 NC_010552.1 2081052 2081951 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4415 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2081052..2081951) Burkholderia ambifaria MC40-6 6179711 YP_001811598.1 CDS BamMC406_4935 NC_010552.1 2082332 2083189 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4417 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2082332..2083189) Burkholderia ambifaria MC40-6 6179712 YP_001811599.1 CDS BamMC406_4936 NC_010552.1 2083293 2084594 D PFAM: aminotransferase class-III; KEGG: bam:Bamb_4418 aminotransferase class-III; class III aminotransferase 2083293..2084594 Burkholderia ambifaria MC40-6 6179713 YP_001811600.1 CDS BamMC406_4937 NC_010552.1 2084669 2085418 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4419 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2084669..2085418) Burkholderia ambifaria MC40-6 6180610 YP_001811601.1 CDS BamMC406_4938 NC_010552.1 2085524 2086441 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_4420 transcriptional regulator, AraC family; AraC family transcriptional regulator 2085524..2086441 Burkholderia ambifaria MC40-6 6180611 YP_001811602.1 CDS BamMC406_4939 NC_010552.1 2086515 2087375 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bam:Bamb_4421 transcriptional regulator, AraC family; AraC family transcriptional regulator 2086515..2087375 Burkholderia ambifaria MC40-6 6180612 YP_001811603.1 CDS BamMC406_4940 NC_010552.1 2087420 2087827 D KEGG: bam:Bamb_4422 hypothetical protein; hypothetical protein 2087420..2087827 Burkholderia ambifaria MC40-6 6179495 YP_001811604.1 CDS BamMC406_4941 NC_010552.1 2087868 2088314 R KEGG: lpp:plpp0093 hypothetical protein; hypothetical protein complement(2087868..2088314) Burkholderia ambifaria MC40-6 6179496 YP_001811605.1 CDS BamMC406_4942 NC_010552.1 2088286 2088885 R SMART: regulatory protein ArsR; KEGG: lpp:plpp0094 hypothetical protein; regulatory protein ArsR complement(2088286..2088885) Burkholderia ambifaria MC40-6 6180953 YP_001811606.1 CDS BamMC406_4943 NC_010552.1 2089140 2089841 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4428 ABC transporter related; ABC transporter-like protein complement(2089140..2089841) Burkholderia ambifaria MC40-6 6180954 YP_001811607.1 CDS livG NC_010552.1 2089841 2090614 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(2089841..2090614) Burkholderia ambifaria MC40-6 6180955 YP_001811608.1 CDS livM NC_010552.1 2090611 2091882 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(2090611..2091882) Burkholderia ambifaria MC40-6 6179903 YP_001811609.1 CDS BamMC406_4946 NC_010552.1 2091894 2092820 R PFAM: inner-membrane translocator; KEGG: bam:Bamb_4431 inner-membrane translocator; inner-membrane translocator complement(2091894..2092820) Burkholderia ambifaria MC40-6 6179904 YP_001811610.1 CDS BamMC406_4947 NC_010552.1 2092992 2094110 R PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_4432 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2092992..2094110) Burkholderia ambifaria MC40-6 6179905 YP_001811611.1 CDS BamMC406_4948 NC_010552.1 2094856 2095542 D KEGG: bam:Bamb_4433 hypothetical protein; hypothetical protein 2094856..2095542 Burkholderia ambifaria MC40-6 6181294 YP_001811612.1 CDS BamMC406_4949 NC_010552.1 2096055 2096540 R KEGG: bch:Bcen2424_5022 hypothetical protein; hypothetical protein complement(2096055..2096540) Burkholderia ambifaria MC40-6 6181295 YP_001811613.1 CDS BamMC406_4950 NC_010552.1 2096653 2097450 R KEGG: ypp:YPDSF_0223 hypothetical protein; hypothetical protein complement(2096653..2097450) Burkholderia ambifaria MC40-6 6181296 YP_001811614.1 CDS BamMC406_4951 NC_010552.1 2097457 2101944 R TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; PAAR repeat-containing protein; KEGG: bch:Bcen2424_5023 YD repeat protein; YD repeat-containing protein complement(2097457..2101944) Burkholderia ambifaria MC40-6 6179804 YP_001811615.1 CDS BamMC406_4952 NC_010552.1 2101952 2102374 R PFAM: Domain of unknown function DUF1795; KEGG: bch:Bcen2424_5024 hypothetical protein; hypothetical protein complement(2101952..2102374) Burkholderia ambifaria MC40-6 6179805 YP_001811616.1 CDS BamMC406_4953 NC_010552.1 2102396 2104516 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bch:Bcen2424_5025 rhs element Vgr protein; type VI secretion system Vgr family protein complement(2102396..2104516) Burkholderia ambifaria MC40-6 6179806 YP_001811617.1 CDS BamMC406_4955 NC_010552.1 2105372 2105884 R PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_4435 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(2105372..2105884) Burkholderia ambifaria MC40-6 6181300 YP_001811618.1 CDS BamMC406_4956 NC_010552.1 2105966 2107234 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bam:Bamb_4436 diguanylate cyclase; diguanylate cyclase complement(2105966..2107234) Burkholderia ambifaria MC40-6 6179478 YP_001811619.1 CDS BamMC406_4957 NC_010552.1 2107231 2107938 R KEGG: bam:Bamb_4437 hypothetical protein; hypothetical protein complement(2107231..2107938) Burkholderia ambifaria MC40-6 6179479 YP_001811620.1 CDS BamMC406_4958 NC_010552.1 2108384 2109271 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4438 transcriptional regulator, LysR family; LysR family transcriptional regulator 2108384..2109271 Burkholderia ambifaria MC40-6 6179824 YP_001811621.1 CDS BamMC406_4959 NC_010552.1 2109415 2110851 D PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: bam:Bamb_4439 N-acyl-D-amino-acid deacylase; N-acyl-D-amino-acid deacylase 2109415..2110851 Burkholderia ambifaria MC40-6 6179825 YP_001811622.1 CDS BamMC406_4960 NC_010552.1 2110942 2112282 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4440 major facilitator superfamily MFS_1; major facilitator transporter 2110942..2112282 Burkholderia ambifaria MC40-6 6179826 YP_001811623.1 CDS BamMC406_4961 NC_010552.1 2112297 2113637 D PFAM: Amidase; KEGG: bam:Bamb_4441 amidase; amidase 2112297..2113637 Burkholderia ambifaria MC40-6 6181414 YP_001811624.1 CDS BamMC406_4962 NC_010552.1 2113751 2114992 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_4442 D-amino-acid dehydrogenase; FAD dependent oxidoreductase 2113751..2114992 Burkholderia ambifaria MC40-6 6181415 YP_001811625.1 CDS BamMC406_4963 NC_010552.1 2115001 2115762 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_4443 GntR domain protein; GntR domain-containing protein complement(2115001..2115762) Burkholderia ambifaria MC40-6 6181416 YP_001811626.1 CDS BamMC406_4964 NC_010552.1 2115834 2116724 R PFAM: amidohydrolase 2; KEGG: bam:Bamb_4444 amidohydrolase 2; amidohydrolase 2 complement(2115834..2116724) Burkholderia ambifaria MC40-6 6181340 YP_001811627.1 CDS BamMC406_4965 NC_010552.1 2116768 2117709 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_4445 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(2116768..2117709) Burkholderia ambifaria MC40-6 6181341 YP_001811628.1 CDS BamMC406_4966 NC_010552.1 2117787 2118830 R PFAM: inner-membrane translocator; KEGG: bam:Bamb_4446 inner-membrane translocator; monosaccharide-transporting ATPase complement(2117787..2118830) Burkholderia ambifaria MC40-6 6181342 YP_001811629.1 CDS BamMC406_4967 NC_010552.1 2119133 2120674 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4447 ABC transporter related; ABC transporter-like protein complement(2119133..2120674) Burkholderia ambifaria MC40-6 6181449 YP_001811630.1 CDS BamMC406_4968 NC_010552.1 2120687 2121463 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4448 short chain dehydrogenase; short chain dehydrogenase complement(2120687..2121463) Burkholderia ambifaria MC40-6 6181450 YP_001811631.1 CDS BamMC406_4969 NC_010552.1 2121517 2122794 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_4449 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein complement(2121517..2122794) Burkholderia ambifaria MC40-6 6181451 YP_001811632.1 CDS BamMC406_4970 NC_010552.1 2122818 2123660 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bam:Bamb_4450 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase complement(2122818..2123660) Burkholderia ambifaria MC40-6 6179520 YP_001811633.1 CDS BamMC406_4971 NC_010552.1 2123700 2124464 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_4451 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2123700..2124464) Burkholderia ambifaria MC40-6 6179521 YP_001811634.1 CDS BamMC406_4972 NC_010552.1 2125123 2125413 D KEGG: bam:Bamb_4452 hypothetical protein; hypothetical protein 2125123..2125413 Burkholderia ambifaria MC40-6 6180215 YP_001811635.1 CDS BamMC406_4973 NC_010552.1 2125576 2126562 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B0618 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2125576..2126562 Burkholderia ambifaria MC40-6 6180216 YP_001811636.1 CDS BamMC406_4974 NC_010552.1 2126775 2127077 D KEGG: bam:Bamb_4454 hypothetical protein; hypothetical protein 2126775..2127077 Burkholderia ambifaria MC40-6 6180217 YP_001811637.1 CDS BamMC406_4975 NC_010552.1 2127271 2128467 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bam:Bamb_4455 gamma-butyrobetaine dioxygenase; gamma-butyrobetaine dioxygenase complement(2127271..2128467) Burkholderia ambifaria MC40-6 6180097 YP_001811638.1 CDS BamMC406_4976 NC_010552.1 2128490 2129446 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bam:Bamb_4456 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(2128490..2129446) Burkholderia ambifaria MC40-6 6180098 YP_001811639.1 CDS BamMC406_4977 NC_010552.1 2129472 2129960 R KEGG: bam:Bamb_4457 thioesterase-like protein; thioesterase-like protein complement(2129472..2129960) Burkholderia ambifaria MC40-6 6180099 YP_001811640.1 CDS BamMC406_4978 NC_010552.1 2129967 2130932 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(2129967..2130932) Burkholderia ambifaria MC40-6 6180345 YP_001811641.1 CDS BamMC406_4979 NC_010552.1 2131021 2131950 R PFAM: protein of unknown function DUF849; KEGG: bam:Bamb_4459 protein of unknown function DUF849; hypothetical protein complement(2131021..2131950) Burkholderia ambifaria MC40-6 6180346 YP_001811642.1 CDS BamMC406_4980 NC_010552.1 2132049 2133002 R TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bam:Bamb_4460 substrate-binding region of ABC-type glycine betaine transport system; choline ABC transporter periplasmic binding protein complement(2132049..2133002) Burkholderia ambifaria MC40-6 6180347 YP_001811643.1 CDS BamMC406_4981 NC_010552.1 2133312 2134283 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4461 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2133312..2134283) Burkholderia ambifaria MC40-6 6180788 YP_001811644.1 CDS BamMC406_4982 NC_010552.1 2134419 2136719 D catalyzes the oxidative decarboxylation of malate to form pyruvate; malic enzyme 2134419..2136719 Burkholderia ambifaria MC40-6 6180789 YP_001811645.1 CDS BamMC406_4983 NC_010552.1 2137415 2137597 D KEGG: rso:RS00380 hypothetical protein; hypothetical protein 2137415..2137597 Burkholderia ambifaria MC40-6 6180790 YP_001811646.1 CDS BamMC406_4984 NC_010552.1 2137696 2138886 D KEGG: rso:RS00379 hypothetical protein; hypothetical protein 2137696..2138886 Burkholderia ambifaria MC40-6 6181356 YP_001811647.1 CDS BamMC406_4985 NC_010552.1 2138886 2140085 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4463 major facilitator superfamily MFS_1; major facilitator transporter 2138886..2140085 Burkholderia ambifaria MC40-6 6181357 YP_001811648.1 CDS BamMC406_4986 NC_010552.1 2140088 2140966 D PFAM: Methyltransferase type 12; KEGG: rso:RS00376 hypothetical protein; type 12 methyltransferase 2140088..2140966 Burkholderia ambifaria MC40-6 6181358 YP_001811649.1 CDS BamMC406_4987 NC_010552.1 2140973 2141677 D KEGG: rso:RS00375 hypothetical protein; hypothetical protein 2140973..2141677 Burkholderia ambifaria MC40-6 6180779 YP_001811650.1 CDS BamMC406_4988 NC_010552.1 2141670 2142908 D KEGG: rso:RS00374 hypothetical protein; hypothetical protein 2141670..2142908 Burkholderia ambifaria MC40-6 6180780 YP_001811651.1 CDS BamMC406_4989 NC_010552.1 2143029 2144156 R PFAM: aminotransferase class V; KEGG: bam:Bamb_4464 aminotransferase, class V; class V aminotransferase complement(2143029..2144156) Burkholderia ambifaria MC40-6 6180781 YP_001811652.1 CDS BamMC406_4990 NC_010552.1 2144494 2146272 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bam:Bamb_4465 sulfate transporter; sulfate transporter 2144494..2146272 Burkholderia ambifaria MC40-6 6180913 YP_001811653.1 CDS BamMC406_4991 NC_010552.1 2146440 2147966 D PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: bam:Bamb_4466 CHAD domain containing protein; CHAD domain-containing protein 2146440..2147966 Burkholderia ambifaria MC40-6 6180914 YP_001811654.1 CDS BamMC406_4992 NC_010552.1 2147995 2148543 R PFAM: cytochrome c class I; KEGG: bam:Bamb_4467 cytochrome c, class I; cytochrome c class I complement(2147995..2148543) Burkholderia ambifaria MC40-6 6180915 YP_001811655.1 CDS BamMC406_4993 NC_010552.1 2148540 2149040 R PFAM: cytochrome c class I; KEGG: bam:Bamb_4468 cytochrome c, class I; cytochrome c class I complement(2148540..2149040) Burkholderia ambifaria MC40-6 6181053 YP_001811656.1 CDS BamMC406_4994 NC_010552.1 2149037 2149582 R PFAM: methylamine dehydrogenase light chain domain protein; KEGG: bur:Bcep18194_B0604 amine dehydrogenase; amine dehydrogenase complement(2149037..2149582) Burkholderia ambifaria MC40-6 6181054 YP_001811657.1 CDS BamMC406_4995 NC_010552.1 2149622 2150257 R TIGRFAM: methylamine dehydrogenase accessory protein MauD; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_4470 methylamine dehydrogenase accessory protein MauD; methylamine dehydrogenase accessory protein MauD complement(2149622..2150257) Burkholderia ambifaria MC40-6 6181055 YP_001811658.1 CDS BamMC406_4996 NC_010552.1 2150254 2150808 R KEGG: bam:Bamb_4471 hypothetical protein; hypothetical protein complement(2150254..2150808) Burkholderia ambifaria MC40-6 6181380 YP_001811659.1 CDS BamMC406_4997 NC_010552.1 2150816 2151973 R PFAM: methylamine dehydrogenase heavy subunit; KEGG: bam:Bamb_4472 amine dehydrogenase; amine dehydrogenase complement(2150816..2151973) Burkholderia ambifaria MC40-6 6181381 YP_001811660.1 CDS BamMC406_4998 NC_010552.1 2152221 2153177 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_4473 transcriptional regulator, AraC family; AraC family transcriptional regulator 2152221..2153177 Burkholderia ambifaria MC40-6 6181382 YP_001811661.1 CDS BamMC406_4999 NC_010552.1 2153311 2154255 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_4474 transcriptional regulator, AraC family; AraC family transcriptional regulator 2153311..2154255 Burkholderia ambifaria MC40-6 6181252 YP_001811662.1 CDS BamMC406_5000 NC_010552.1 2154734 2156452 D PFAM: Propeptide peptidase M4 and M36; KEGG: bam:Bamb_4475 propeptide, peptidase M4 and M36; peptidase 2154734..2156452 Burkholderia ambifaria MC40-6 6181253 YP_001811663.1 CDS BamMC406_5001 NC_010552.1 2156529 2157782 D PFAM: peptidase M20; peptidase M28; KEGG: bam:Bamb_4476 leucyl aminopeptidase; leucyl aminopeptidase 2156529..2157782 Burkholderia ambifaria MC40-6 6179163 YP_001811664.1 CDS BamMC406_5002 NC_010552.1 2157901 2158269 D PFAM: protein of unknown function DUF74; KEGG: bam:Bamb_4477 protein of unknown function DUF74; hypothetical protein 2157901..2158269 Burkholderia ambifaria MC40-6 6179164 YP_001811665.1 CDS BamMC406_5003 NC_010552.1 2158291 2159010 R PFAM: PepSY-associated TM helix domain protein; KEGG: bam:Bamb_4478 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(2158291..2159010) Burkholderia ambifaria MC40-6 6179165 YP_001811666.1 CDS BamMC406_5004 NC_010552.1 2159007 2159690 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: bam:Bamb_4479 putative hydroxylase; putative hydroxylase complement(2159007..2159690) Burkholderia ambifaria MC40-6 6179894 YP_001811667.1 CDS BamMC406_5005 NC_010552.1 2159735 2161945 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_4480 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2159735..2161945) Burkholderia ambifaria MC40-6 6179895 YP_001811668.1 CDS BamMC406_5006 NC_010552.1 2162469 2163719 R PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4481 major facilitator superfamily MFS_1; major facilitator transporter complement(2162469..2163719) Burkholderia ambifaria MC40-6 6179896 YP_001811669.1 CDS BamMC406_5007 NC_010552.1 2163944 2165083 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_4482 porin, gram-negative type; porin complement(2163944..2165083) Burkholderia ambifaria MC40-6 6179723 YP_001811670.1 CDS BamMC406_5008 NC_010552.1 2165340 2166308 R TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bam:Bamb_4483 substrate-binding region of ABC-type glycine betaine transport system; choline ABC transporter periplasmic binding protein complement(2165340..2166308) Burkholderia ambifaria MC40-6 6179724 YP_001811671.1 CDS BamMC406_5009 NC_010552.1 2166353 2167903 R TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: bam:Bamb_4484 sulfatase; choline-sulfatase complement(2166353..2167903) Burkholderia ambifaria MC40-6 6179725 YP_001811672.1 CDS BamMC406_5010 NC_010552.1 2168105 2169025 D TIGRFAM: choline sulfate-utilization transcription factor; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4485 transcriptional regulator, LysR family; LysR family transcriptional regulator 2168105..2169025 Burkholderia ambifaria MC40-6 6180672 YP_001811673.1 CDS BamMC406_5011 NC_010552.1 2169251 2170135 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 2169251..2170135 Burkholderia ambifaria MC40-6 6180673 YP_001811674.1 CDS BamMC406_5012 NC_010552.1 2170295 2171950 R PFAM: amino acid permease-associated region; KEGG: bam:Bamb_4487 amino acid permease-associated region; amino acid permease-associated protein complement(2170295..2171950) Burkholderia ambifaria MC40-6 6180674 YP_001811675.1 CDS BamMC406_5013 NC_010552.1 2172129 2172992 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bam:Bamb_4488 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(2172129..2172992) Burkholderia ambifaria MC40-6 6181274 YP_001811676.1 CDS BamMC406_5014 NC_010552.1 2173126 2174274 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_4489 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit complement(2173126..2174274) Burkholderia ambifaria MC40-6 6181275 YP_001811677.1 CDS BamMC406_5015 NC_010552.1 2174387 2175628 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_4490 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(2174387..2175628) Burkholderia ambifaria MC40-6 6181276 YP_001811678.1 CDS BamMC406_5016 NC_010552.1 2175682 2176467 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bam:Bamb_4491 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta complement(2175682..2176467) Burkholderia ambifaria MC40-6 6179323 YP_001811679.1 CDS BamMC406_5017 NC_010552.1 2176464 2177633 R PFAM: Electron transfer flavoprotein alpha subunit; KEGG: bam:Bamb_4492 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(2176464..2177633) Burkholderia ambifaria MC40-6 6179324 YP_001811680.1 CDS BamMC406_5018 NC_010552.1 2177638 2179563 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bam:Bamb_4493 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein complement(2177638..2179563) Burkholderia ambifaria MC40-6 6179325 YP_001811681.1 CDS BamMC406_5019 NC_010552.1 2179566 2181629 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: bam:Bamb_4494 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase complement(2179566..2181629) Burkholderia ambifaria MC40-6 6181076 YP_001811682.1 CDS BamMC406_5020 NC_010552.1 2181703 2182236 R PFAM: 4-vinyl reductase 4VR; KEGG: bam:Bamb_4495 4-vinyl reductase, 4VR; 4-vinyl reductase 4VR complement(2181703..2182236) Burkholderia ambifaria MC40-6 6181077 YP_001811683.1 CDS BamMC406_5021 NC_010552.1 2182370 2183341 R PFAM: peptidase M19 renal dipeptidase; KEGG: bam:Bamb_4496 membrane dipeptidase; membrane dipeptidase complement(2182370..2183341) Burkholderia ambifaria MC40-6 6181078 YP_001811684.1 CDS BamMC406_5022 NC_010552.1 2183385 2184659 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2183385..2184659) Burkholderia ambifaria MC40-6 6179623 YP_001811685.1 CDS BamMC406_5023 NC_010552.1 2185107 2186132 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_4498 transcriptional regulator, AraC family; AraC family transcriptional regulator 2185107..2186132 Burkholderia ambifaria MC40-6 6179624 YP_001811686.1 CDS BamMC406_5024 NC_010552.1 2186189 2187601 R PFAM: coagulation factor 5/8 type domain protein; WD40 domain protein beta Propeller; KEGG: bam:Bamb_4499 coagulation factor 5/8 type domain protein; coagulation factor 5/8 type domain-containing protein complement(2186189..2187601) Burkholderia ambifaria MC40-6 6179625 YP_001811687.1 CDS BamMC406_5025 NC_010552.1 2187885 2189303 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_4500 transcriptional regulator, GntR family; transcriptional regulator 2187885..2189303 Burkholderia ambifaria MC40-6 6179210 YP_001811688.1 CDS BamMC406_5026 NC_010552.1 2189311 2190120 D KEGG: bam:Bamb_4501 hypothetical protein; hypothetical protein 2189311..2190120 Burkholderia ambifaria MC40-6 6179211 YP_001811689.1 CDS BamMC406_5027 NC_010552.1 2190199 2191395 R TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_4502 alcohol dehydrogenase GroES domain protein; formaldehyde dehydrogenase, glutathione-independent complement(2190199..2191395) Burkholderia ambifaria MC40-6 6179212 YP_001811690.1 CDS BamMC406_5028 NC_010552.1 2191670 2192860 R PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_4503 secretion protein HlyD family protein; secretion protein HlyD family protein complement(2191670..2192860) Burkholderia ambifaria MC40-6 6179810 YP_001811691.1 CDS BamMC406_5029 NC_010552.1 2192860 2194680 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_4504 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(2192860..2194680) Burkholderia ambifaria MC40-6 6179811 YP_001811692.1 CDS BamMC406_5030 NC_010552.1 2194680 2195618 R TIGRFAM: rhamnosyltransferase; KEGG: bam:Bamb_4505 rhamnosyltransferase; rhamnosyltransferase complement(2194680..2195618) Burkholderia ambifaria MC40-6 6181422 YP_001811693.1 CDS BamMC406_5031 NC_010552.1 2195629 2197200 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4506 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(2195629..2197200) Burkholderia ambifaria MC40-6 6181423 YP_001811694.1 CDS BamMC406_5032 NC_010552.1 2197197 2198480 R PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl transferase family 28; KEGG: bam:Bamb_4507 glycosyl transferase, family 28; glycosyl transferase family protein complement(2197197..2198480) Burkholderia ambifaria MC40-6 6181424 YP_001811695.1 CDS BamMC406_5033 NC_010552.1 2198500 2199069 R PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: bam:Bamb_4508 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase complement(2198500..2199069) Burkholderia ambifaria MC40-6 6180474 YP_001811696.1 CDS BamMC406_5034 NC_010552.1 2199132 2200034 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_4509 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2199132..2200034) Burkholderia ambifaria MC40-6 6180475 YP_001811697.1 CDS BamMC406_5035 NC_010552.1 2200759 2201343 D HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 2200759..2201343 Burkholderia ambifaria MC40-6 6180476 YP_001811698.1 CDS BamMC406_5036 NC_010552.1 2201376 2202845 D catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 2201376..2202845 Burkholderia ambifaria MC40-6 6179678 YP_001811699.1 CDS BamMC406_5037 NC_010552.1 2202868 2204568 D catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 2202868..2204568 Burkholderia ambifaria MC40-6 6179679 YP_001811700.1 CDS BamMC406_5038 NC_010552.1 2204653 2205777 R KEGG: bam:Bamb_4513 hypothetical protein; hypothetical protein complement(2204653..2205777) Burkholderia ambifaria MC40-6 6179680 YP_001811701.1 CDS BamMC406_5039 NC_010552.1 2206008 2206511 R KEGG: bam:Bamb_4514 hypothetical protein; hypothetical protein complement(2206008..2206511) Burkholderia ambifaria MC40-6 6179398 YP_001811702.1 CDS BamMC406_5040 NC_010552.1 2206635 2207459 R PFAM: OmpW family protein; KEGG: bam:Bamb_4515 OmpW family protein; OmpW family protein complement(2206635..2207459) Burkholderia ambifaria MC40-6 6179399 YP_001811703.1 CDS BamMC406_5041 NC_010552.1 2207534 2208787 R KEGG: bam:Bamb_4516 hypothetical protein; hypothetical protein complement(2207534..2208787) Burkholderia ambifaria MC40-6 6179400 YP_001811704.1 CDS BamMC406_5042 NC_010552.1 2208859 2210457 R KEGG: bam:Bamb_4517 hypothetical protein; hypothetical protein complement(2208859..2210457) Burkholderia ambifaria MC40-6 6179617 YP_001811705.1 CDS BamMC406_5043 NC_010552.1 2211325 2212269 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4520 ABC transporter related; ABC transporter-like protein 2211325..2212269 Burkholderia ambifaria MC40-6 6179618 YP_001811706.1 CDS BamMC406_5044 NC_010552.1 2212275 2213045 D PFAM: ABC-2 type transporter; KEGG: bam:Bamb_4521 ABC-2 type transporter; ABC-2 type transporter 2212275..2213045 Burkholderia ambifaria MC40-6 6179619 YP_001811707.1 CDS BamMC406_5045 NC_010552.1 2213216 2213920 D PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_4522 beta-lactamase domain protein; beta-lactamase domain-containing protein 2213216..2213920 Burkholderia ambifaria MC40-6 6180117 YP_001811708.1 CDS BamMC406_5046 NC_010552.1 2213954 2214184 R KEGG: bam:Bamb_4523 hypothetical protein; hypothetical protein complement(2213954..2214184) Burkholderia ambifaria MC40-6 6180118 YP_001811709.1 CDS BamMC406_5047 NC_010552.1 2214339 2216108 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: bam:Bamb_4524 PAS/PAC sensor hybrid histidine kinase; PAS/PAC sensor hybrid histidine kinase 2214339..2216108 Burkholderia ambifaria MC40-6 6180119 YP_001811710.1 CDS BamMC406_5048 NC_010552.1 2216365 2216796 D PFAM: DGPFAETKE family protein; KEGG: bam:Bamb_4525 DGPFAETKE family protein; DGPFAETKE family protein 2216365..2216796 Burkholderia ambifaria MC40-6 6179294 YP_001811711.1 CDS BamMC406_5049 NC_010552.1 2216933 2217739 D KEGG: bvi:Bcep1808_3443 hypothetical protein; hypothetical protein 2216933..2217739 Burkholderia ambifaria MC40-6 6179295 YP_001811712.1 CDS BamMC406_5050 NC_010552.1 2217736 2218467 D PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_B0524 alpha/beta hydrolase; alpha/beta hydrolase fold protein 2217736..2218467 Burkholderia ambifaria MC40-6 6179296 YP_001811713.1 CDS BamMC406_5051 NC_010552.1 2218594 2219442 D PFAM: putative esterase; KEGG: bam:Bamb_4526 putative esterase; putative esterase 2218594..2219442 Burkholderia ambifaria MC40-6 6181222 YP_001811714.1 CDS BamMC406_5052 NC_010552.1 2219598 2220497 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4527 transcriptional regulator, LysR family; LysR family transcriptional regulator 2219598..2220497 Burkholderia ambifaria MC40-6 6181223 YP_001811715.1 CDS BamMC406_5053 NC_010552.1 2220609 2221616 D PFAM: aldo/keto reductase; KEGG: bam:Bamb_4528 aldo/keto reductase; aldo/keto reductase 2220609..2221616 Burkholderia ambifaria MC40-6 6181224 YP_001811716.1 CDS BamMC406_5054 NC_010552.1 2221726 2221956 R KEGG: bam:Bamb_4529 hypothetical protein; hypothetical protein complement(2221726..2221956) Burkholderia ambifaria MC40-6 6180171 YP_001811717.1 CDS BamMC406_5055 NC_010552.1 2222234 2223136 R KEGG: bam:Bamb_4530 hypothetical protein; hypothetical protein complement(2222234..2223136) Burkholderia ambifaria MC40-6 6180172 YP_001811718.1 CDS BamMC406_5056 NC_010552.1 2223266 2223553 D KEGG: bam:Bamb_4531 hypothetical protein; hypothetical protein 2223266..2223553 Burkholderia ambifaria MC40-6 6180173 YP_001811719.1 CDS BamMC406_5057 NC_010552.1 2224156 2226111 D catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 2224156..2226111 Burkholderia ambifaria MC40-6 6179981 YP_001811720.1 CDS BamMC406_5058 NC_010552.1 2226424 2227356 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_4534 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(2226424..2227356) Burkholderia ambifaria MC40-6 6179982 YP_001811721.1 CDS BamMC406_5059 NC_010552.1 2227523 2228443 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bam:Bamb_4535 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 2227523..2228443 Burkholderia ambifaria MC40-6 6181521 YP_001811722.1 CDS BamMC406_5060 NC_010552.1 2228440 2229618 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4536 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2228440..2229618 Burkholderia ambifaria MC40-6 6181522 YP_001811723.1 CDS BamMC406_5061 NC_010552.1 2229615 2230553 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4537 ABC transporter related; ABC transporter-like protein 2229615..2230553 Burkholderia ambifaria MC40-6 6181523 YP_001811724.1 CDS BamMC406_5062 NC_010552.1 2230550 2231317 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4538 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2230550..2231317 Burkholderia ambifaria MC40-6 6180985 YP_001811725.1 CDS BamMC406_5063 NC_010552.1 2231537 2232223 D PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_4539 lytic transglycosylase, catalytic; lytic transglycosylase 2231537..2232223 Burkholderia ambifaria MC40-6 6180986 YP_001811726.1 CDS BamMC406_5064 NC_010552.1 2232353 2232655 D KEGG: bur:Bcep18194_B0494 hypothetical protein; hypothetical protein 2232353..2232655 Burkholderia ambifaria MC40-6 6180987 YP_001811727.1 CDS BamMC406_5065 NC_010552.1 2233097 2233537 R KEGG: bvi:Bcep1808_3455 dihydroneopterin aldolase; dihydroneopterin aldolase complement(2233097..2233537) Burkholderia ambifaria MC40-6 6180808 YP_001811728.1 CDS BamMC406_5066 NC_010552.1 2233534 2234163 R PFAM: Sarcosine oxidase gamma subunit; KEGG: bam:Bamb_4543 sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma complement(2233534..2234163) Burkholderia ambifaria MC40-6 6180809 YP_001811729.1 CDS BamMC406_5067 NC_010552.1 2234153 2237164 R TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: bam:Bamb_4544 sarcosine oxidase, alpha subunit family; sarcosine oxidase subunit alpha family protein complement(2234153..2237164) Burkholderia ambifaria MC40-6 6180810 YP_001811730.1 CDS BamMC406_5068 NC_010552.1 2237161 2237472 R PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: bam:Bamb_4545 sarcosine oxidase, delta subunit, heterotetrameric; sarcosine oxidase subunit delta heterotetrameric complement(2237161..2237472) Burkholderia ambifaria MC40-6 6181219 YP_001811731.1 CDS BamMC406_5069 NC_010552.1 2237498 2238742 R TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_4546 sarcosine oxidase, beta subunit family; sarcosine oxidase subunit beta family protein complement(2237498..2238742) Burkholderia ambifaria MC40-6 6181220 YP_001811732.1 CDS BamMC406_5070 NC_010552.1 2238758 2240143 R KEGG: bam:Bamb_4547 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(2238758..2240143) Burkholderia ambifaria MC40-6 6181221 YP_001811733.1 CDS BamMC406_5071 NC_010552.1 2240406 2241479 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_4548 transcriptional regulator, AraC family; AraC family transcriptional regulator 2240406..2241479 Burkholderia ambifaria MC40-6 6180993 YP_001811734.1 CDS BamMC406_5072 NC_010552.1 2241684 2242388 D PFAM: regulatory protein GntR HTH; GntR domain protein; Helix-turn-helix type 11 domain protein; KEGG: bam:Bamb_4549 GntR domain protein; GntR domain-containing protein 2241684..2242388 Burkholderia ambifaria MC40-6 6180994 YP_001811735.1 CDS BamMC406_5073 NC_010552.1 2242459 2243349 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bam:Bamb_4550 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 2242459..2243349 Burkholderia ambifaria MC40-6 6180995 YP_001811736.1 CDS BamMC406_5074 NC_010552.1 2243369 2244667 D PFAM: type III effector Hrp-dependent outers; KEGG: bam:Bamb_4551 type III effector Hrp-dependent outers; Hrp-dependent type III effector protein 2243369..2244667 Burkholderia ambifaria MC40-6 6181102 YP_001811737.1 CDS BamMC406_5075 NC_010552.1 2244667 2245305 D PFAM: class II aldolase/adducin family protein; KEGG: bam:Bamb_4552 putative aldolase; putative aldolase 2244667..2245305 Burkholderia ambifaria MC40-6 6181103 YP_001811738.1 CDS BamMC406_5076 NC_010552.1 2245445 2246770 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4553 major facilitator superfamily MFS_1; major facilitator transporter 2245445..2246770 Burkholderia ambifaria MC40-6 6181104 YP_001811739.1 CDS BamMC406_5077 NC_010552.1 2246835 2247608 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_4554 hydroxypyruvate isomerase; hydroxypyruvate isomerase 2246835..2247608 Burkholderia ambifaria MC40-6 6180300 YP_001811740.1 CDS BamMC406_5078 NC_010552.1 2247636 2248607 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: bam:Bamb_4555 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2247636..2248607 Burkholderia ambifaria MC40-6 6180301 YP_001811741.1 CDS BamMC406_5079 NC_010552.1 2248666 2249754 R TIGRFAM: membrane protein; KEGG: bur:Bcep18194_B0472 hypothetical protein; membrane protein complement(2248666..2249754) Burkholderia ambifaria MC40-6 6180302 YP_001811742.1 CDS BamMC406_5080 NC_010552.1 2249751 2250920 R KEGG: bur:Bcep18194_B0471 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein complement(2249751..2250920) Burkholderia ambifaria MC40-6 6180330 YP_001811743.1 CDS BamMC406_5081 NC_010552.1 2251323 2251850 D PFAM: cytochrome B561; KEGG: bur:Bcep18194_B0469 cytochrome b561; cytochrome B561 2251323..2251850 Burkholderia ambifaria MC40-6 6180331 YP_001811744.1 CDS BamMC406_5082 NC_010552.1 2252060 2252338 R KEGG: bam:Bamb_4557 hypothetical protein; hypothetical protein complement(2252060..2252338) Burkholderia ambifaria MC40-6 6180332 YP_001811745.1 CDS BamMC406_5083 NC_010552.1 2252410 2252754 R KEGG: bam:Bamb_4558 hypothetical protein; hypothetical protein complement(2252410..2252754) Burkholderia ambifaria MC40-6 6181337 YP_001811746.1 CDS BamMC406_5084 NC_010552.1 2252960 2253649 D PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: bam:Bamb_4559 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 2252960..2253649 Burkholderia ambifaria MC40-6 6181338 YP_001811747.1 CDS BamMC406_5085 NC_010552.1 2253678 2254619 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4560 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2253678..2254619) Burkholderia ambifaria MC40-6 6181339 YP_001811748.1 CDS BamMC406_5086 NC_010552.1 2254696 2255094 D KEGG: bam:Bamb_4561 hypothetical protein; hypothetical protein 2254696..2255094 Burkholderia ambifaria MC40-6 6179598 YP_001811749.1 CDS BamMC406_5087 NC_010552.1 2255237 2255506 D KEGG: bam:Bamb_4562 thiamineS protein; sulfur transfer protein ThiS 2255237..2255506 Burkholderia ambifaria MC40-6 6179599 YP_001811750.1 CDS BamMC406_5088 NC_010552.1 2255562 2256710 D KEGG: bam:Bamb_4563 glycosyl hydrolase; glycosyl hydrolase 2255562..2256710 Burkholderia ambifaria MC40-6 6179600 YP_001811751.1 CDS BamMC406_5089 NC_010552.1 2256812 2257759 R TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bam:Bamb_4564 substrate-binding region of ABC-type glycine betaine transport system; choline ABC transporter periplasmic binding protein complement(2256812..2257759) Burkholderia ambifaria MC40-6 6179367 YP_001811752.1 CDS BamMC406_5090 NC_010552.1 2257870 2258868 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_4565 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2257870..2258868) Burkholderia ambifaria MC40-6 6179368 YP_001811753.1 CDS BamMC406_5091 NC_010552.1 2258987 2259883 R TIGRFAM: choline ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4566 binding-protein-dependent transport systems inner membrane component; choline ABC transporter permease complement(2258987..2259883) Burkholderia ambifaria MC40-6 6179369 YP_001811754.1 CDS BamMC406_5092 NC_010552.1 2259876 2261045 R KEGG: bam:Bamb_4567 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase subunit complement(2259876..2261045) Burkholderia ambifaria MC40-6 6181515 YP_001811755.1 CDS BamMC406_5093 NC_010552.1 2261659 2265060 D KEGG: bam:Bamb_4568 membrane protein-like protein; hypothetical protein 2261659..2265060 Burkholderia ambifaria MC40-6 6181516 YP_001811756.1 CDS BamMC406_5094 NC_010552.1 2265057 2266394 D KEGG: bam:Bamb_4569 hypothetical protein; hypothetical protein 2265057..2266394 Burkholderia ambifaria MC40-6 6181517 YP_001811757.1 CDS BamMC406_5095 NC_010552.1 2266608 2266913 D PFAM: NIPSNAP family containing protein; KEGG: bvi:Bcep1808_3475 NIPSNAP family containing protein; NIPSNAP family protein 2266608..2266913 Burkholderia ambifaria MC40-6 6180883 YP_001811758.1 CDS BamMC406_5096 NC_010552.1 2267214 2267864 D PFAM: NADPH-dependent FMN reductase; KEGG: bam:Bamb_4572 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2267214..2267864 Burkholderia ambifaria MC40-6 6180884 YP_001811759.1 CDS BamMC406_5097 NC_010552.1 2268088 2268306 D KEGG: bam:Bamb_4573 hypothetical protein; hypothetical protein 2268088..2268306 Burkholderia ambifaria MC40-6 6180885 YP_001811760.1 CDS BamMC406_5098 NC_010552.1 2268399 2269301 D KEGG: bam:Bamb_4574 hypothetical protein; hypothetical protein 2268399..2269301 Burkholderia ambifaria MC40-6 6179152 YP_001811761.1 CDS BamMC406_5099 NC_010552.1 2270332 2270694 R KEGG: bpl:BURPS1106A_A1944 hypothetical protein; hypothetical protein complement(2270332..2270694) Burkholderia ambifaria MC40-6 6179153 YP_001811762.1 CDS BamMC406_5100 NC_010552.1 2270698 2271510 R KEGG: bpm:BURPS1710b_2228 DNA-directed RNA polymerase II, large subunit, putative; DNA-directed RNA polymerase II, large subunit putative complement(2270698..2271510) Burkholderia ambifaria MC40-6 6181147 YP_001811763.1 CDS BamMC406_5101 NC_010552.1 2271580 2273223 R KEGG: bvi:Bcep1808_3481 hypothetical protein; hypothetical protein complement(2271580..2273223) Burkholderia ambifaria MC40-6 6181148 YP_001811764.1 CDS BamMC406_5102 NC_010552.1 2273251 2273355 R KEGG: bpd:BURPS668_A2040 chromosome segregation ATPases; chromosome segregation ATPase complement(2273251..2273355) Burkholderia ambifaria MC40-6 6181149 YP_001811765.1 CDS BamMC406_5103 NC_010552.1 2273362 2273607 R KEGG: bpm:BURPS1710b_A0458 Tash protein PEST motif family; PEST motif-containing protein complement(2273362..2273607) Burkholderia ambifaria MC40-6 6179635 YP_001811766.1 CDS BamMC406_5104 NC_010552.1 2273635 2275656 R KEGG: bvi:Bcep1808_3481 hypothetical protein; hypothetical protein complement(2273635..2275656) Burkholderia ambifaria MC40-6 6179636 YP_001811767.1 CDS BamMC406_5105 NC_010552.1 2275744 2276148 R KEGG: bpm:BURPS1710b_2228 DNA-directed RNA polymerase II, large subunit, putative; DNA-directed RNA polymerase II, large subunit putative complement(2275744..2276148) Burkholderia ambifaria MC40-6 6179637 YP_001811768.1 CDS BamMC406_5106 NC_010552.1 2276161 2276706 R KEGG: bpd:BURPS668_A2040 chromosome segregation ATPases; hypothetical protein complement(2276161..2276706) Burkholderia ambifaria MC40-6 6179891 YP_001811769.1 CDS BamMC406_5107 NC_010552.1 2276746 2277225 R KEGG: bpm:BURPS1710b_A0464 gene 11-1 protein precursor, putative; hypothetical protein complement(2276746..2277225) Burkholderia ambifaria MC40-6 6179892 YP_001811770.1 CDS BamMC406_5108 NC_010552.1 2277449 2278123 D PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_4576 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2277449..2278123 Burkholderia ambifaria MC40-6 6179893 YP_001811771.1 CDS BamMC406_5109 NC_010552.1 2278483 2279628 D KEGG: bam:Bamb_4577 hypothetical protein; hypothetical protein 2278483..2279628 Burkholderia ambifaria MC40-6 6180305 YP_001811772.1 CDS BamMC406_5110 NC_010552.1 2279643 2280797 D KEGG: bam:Bamb_4578 hypothetical protein; hypothetical protein 2279643..2280797 Burkholderia ambifaria MC40-6 6180306 YP_001811773.1 CDS BamMC406_5111 NC_010552.1 2280830 2281297 D KEGG: bam:Bamb_4579 hypothetical protein; hypothetical protein 2280830..2281297 Burkholderia ambifaria MC40-6 6180307 YP_001811774.1 CDS BamMC406_5112 NC_010552.1 2281492 2281935 R KEGG: bam:Bamb_4580 hypothetical protein; hypothetical protein complement(2281492..2281935) Burkholderia ambifaria MC40-6 6179341 YP_001811775.1 CDS BamMC406_5113 NC_010552.1 2281998 2282801 R PFAM: EAL domain protein; KEGG: bam:Bamb_4581 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(2281998..2282801) Burkholderia ambifaria MC40-6 6179342 YP_001811776.1 CDS BamMC406_5114 NC_010552.1 2283129 2283221 R hypothetical protein complement(2283129..2283221) Burkholderia ambifaria MC40-6 6179343 YP_001811777.1 CDS BamMC406_5115 NC_010552.1 2283531 2284673 R KEGG: bam:Bamb_4582 hypothetical protein; hypothetical protein complement(2283531..2284673) Burkholderia ambifaria MC40-6 6179592 YP_001811778.1 CDS BamMC406_5116 NC_010552.1 2284824 2285162 R KEGG: bam:Bamb_4583 hypothetical protein; hypothetical protein complement(2284824..2285162) Burkholderia ambifaria MC40-6 6179593 YP_001811779.1 CDS BamMC406_5117 NC_010552.1 2285162 2285593 R KEGG: aav:Aave_4586 hypothetical protein; hypothetical protein complement(2285162..2285593) Burkholderia ambifaria MC40-6 6179594 YP_001811780.1 CDS BamMC406_5118 NC_010552.1 2286023 2288023 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bam:Bamb_4585 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding complement(2286023..2288023) Burkholderia ambifaria MC40-6 6179137 YP_001811781.1 CDS BamMC406_5119 NC_010552.1 2288060 2288845 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2288060..2288845) Burkholderia ambifaria MC40-6 6179138 YP_001811782.1 CDS BamMC406_5120 NC_010552.1 2288865 2290472 R PFAM: carboxyl transferase; KEGG: bam:Bamb_4587 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(2288865..2290472) Burkholderia ambifaria MC40-6 6179139 YP_001811783.1 CDS BamMC406_5121 NC_010552.1 2290504 2291685 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_4588 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2290504..2291685) Burkholderia ambifaria MC40-6 6180794 YP_001811784.1 CDS BamMC406_5122 NC_010552.1 2291881 2292603 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_4589 transcriptional regulator, TetR family; TetR family transcriptional regulator 2291881..2292603 Burkholderia ambifaria MC40-6 6180795 YP_001811785.1 CDS BamMC406_5123 NC_010552.1 2292671 2293210 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_4590 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2292671..2293210) Burkholderia ambifaria MC40-6 6180796 YP_001811786.1 CDS BamMC406_5124 NC_010552.1 2293358 2294437 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_4591 vanillate monooxygenase; vanillate monooxygenase 2293358..2294437 Burkholderia ambifaria MC40-6 6179883 YP_001811787.1 CDS BamMC406_5125 NC_010552.1 2294434 2295399 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_4592 ferredoxin; ferredoxin 2294434..2295399 Burkholderia ambifaria MC40-6 6179884 YP_001811788.1 CDS BamMC406_5126 NC_010552.1 2295448 2296506 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_4593 Rieske (2Fe-2S) domain protein; vanillate monooxygenase 2295448..2296506 Burkholderia ambifaria MC40-6 6179885 YP_001811789.1 CDS BamMC406_5127 NC_010552.1 2296637 2297980 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4594 major facilitator superfamily MFS_1; major facilitator transporter 2296637..2297980 Burkholderia ambifaria MC40-6 6180406 YP_001811790.1 CDS BamMC406_5128 NC_010552.1 2298084 2299178 D KEGG: bam:Bamb_4595 outer membrane protein (porin); outer membrane porin 2298084..2299178 Burkholderia ambifaria MC40-6 6180407 YP_001811791.1 CDS BamMC406_5129 NC_010552.1 2299239 2299685 R KEGG: bam:Bamb_4596 hypothetical protein; hypothetical protein complement(2299239..2299685) Burkholderia ambifaria MC40-6 6180408 YP_001811792.1 CDS BamMC406_5130 NC_010552.1 2300073 2302250 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_4597 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2300073..2302250 Burkholderia ambifaria MC40-6 6179818 YP_001811793.1 CDS BamMC406_5131 NC_010552.1 2302338 2303369 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_4598 alcohol dehydrogenase GroES domain protein; putative dehydrogenase complement(2302338..2303369) Burkholderia ambifaria MC40-6 6179819 YP_001811794.1 CDS BamMC406_5132 NC_010552.1 2303399 2304607 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_4599 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein complement(2303399..2304607) Burkholderia ambifaria MC40-6 6179820 YP_001811795.1 CDS BamMC406_5133 NC_010552.1 2304636 2305367 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_4600 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2304636..2305367) Burkholderia ambifaria MC40-6 6180524 YP_001811796.1 CDS BamMC406_5134 NC_010552.1 2305524 2306999 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: bam:Bamb_4601 mannitol dehydrogenase, C-terminal domain; fructuronate reductase 2305524..2306999 Burkholderia ambifaria MC40-6 6180525 YP_001811797.1 CDS BamMC406_5135 NC_010552.1 2307131 2308423 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4602 major facilitator superfamily MFS_1; major facilitator transporter 2307131..2308423 Burkholderia ambifaria MC40-6 6180526 YP_001811798.1 CDS BamMC406_5136 NC_010552.1 2308703 2310625 R KEGG: bam:Bamb_4607 hypothetical protein; hypothetical protein complement(2308703..2310625) Burkholderia ambifaria MC40-6 6180082 YP_001811799.1 CDS BamMC406_5137 NC_010552.1 2311148 2312341 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_4608 porin, gram-negative type; porin complement(2311148..2312341) Burkholderia ambifaria MC40-6 6180083 YP_001811800.1 CDS BamMC406_5138 NC_010552.1 2312656 2312823 D hypothetical protein 2312656..2312823 Burkholderia ambifaria MC40-6 6180084 YP_001811801.1 CDS BamMC406_5139 NC_010552.1 2312820 2313356 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4611 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2312820..2313356 Burkholderia ambifaria MC40-6 6179497 YP_001811802.1 CDS BamMC406_5140 NC_010552.1 2313473 2314207 D PFAM: metallophosphoesterase; KEGG: bam:Bamb_4612 metallophosphoesterase; metallophosphoesterase 2313473..2314207 Burkholderia ambifaria MC40-6 6179498 YP_001811803.1 CDS BamMC406_5141 NC_010552.1 2314335 2315657 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_4613 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2314335..2315657) Burkholderia ambifaria MC40-6 6180132 YP_001811804.1 CDS BamMC406_5142 NC_010552.1 2315654 2316394 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_4614 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2315654..2316394) Burkholderia ambifaria MC40-6 6180133 YP_001811805.1 CDS BamMC406_5143 NC_010552.1 2316623 2317216 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bam:Bamb_4615 redoxin domain protein; redoxin domain-containing protein 2316623..2317216 Burkholderia ambifaria MC40-6 6180134 YP_001811806.1 CDS BamMC406_5144 NC_010552.1 2317266 2317904 R PFAM: Negative transcriptional regulator; KEGG: bam:Bamb_4616 negative transcriptional regulator; FMN-binding negative transcriptional regulator complement(2317266..2317904) Burkholderia ambifaria MC40-6 6179583 YP_001811807.1 CDS BamMC406_5145 NC_010552.1 2318033 2319583 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_4617 transcriptional regulator, GntR family; transcriptional regulator 2318033..2319583 Burkholderia ambifaria MC40-6 6179584 YP_001811808.1 CDS BamMC406_5146 NC_010552.1 2319680 2321878 D PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bam:Bamb_4618 glycosyl transferase, family 51; peptidoglycan glycosyltransferase 2319680..2321878 Burkholderia ambifaria MC40-6 6179585 YP_001811809.1 CDS BamMC406_5147 NC_010552.1 2321968 2323068 R KEGG: bam:Bamb_4621 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase complement(2321968..2323068) Burkholderia ambifaria MC40-6 6181312 YP_001811810.1 CDS BamMC406_5148 NC_010552.1 2323115 2324464 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bam:Bamb_4622 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(2323115..2324464) Burkholderia ambifaria MC40-6 6181313 YP_001811811.1 CDS BamMC406_5149 NC_010552.1 2324558 2325469 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4623 transcriptional regulator, LysR family; LysR family transcriptional regulator 2324558..2325469 Burkholderia ambifaria MC40-6 6181314 YP_001811812.1 CDS BamMC406_5150 NC_010552.1 2325517 2326569 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: bam:Bamb_4624 inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase complement(2325517..2326569) Burkholderia ambifaria MC40-6 6180515 YP_001811813.1 CDS BamMC406_5151 NC_010552.1 2326580 2327692 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_4625 porin, gram-negative type; porin complement(2326580..2327692) Burkholderia ambifaria MC40-6 6180516 YP_001811814.1 CDS BamMC406_5153 NC_010552.1 2329593 2331020 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4627 major facilitator superfamily MFS_1; major facilitator transporter complement(2329593..2331020) Burkholderia ambifaria MC40-6 6181301 YP_001811815.1 CDS BamMC406_5154 NC_010552.1 2331486 2333930 D PFAM: MscS Mechanosensitive ion channel; KEGG: bam:Bamb_4629 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 2331486..2333930 Burkholderia ambifaria MC40-6 6179838 YP_001811816.1 CDS BamMC406_5155 NC_010552.1 2333982 2335427 R PFAM: outer membrane efflux protein; KEGG: rso:RS03674 putative outer membrane channel lipoprotein; outer membrane efflux protein complement(2333982..2335427) Burkholderia ambifaria MC40-6 6179839 YP_001811817.1 CDS BamMC406_5156 NC_010552.1 2335417 2336760 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rso:RS03671 probable hemolysin secretion-related transmembrane protein; HlyD family type I secretion membrane fusion protein complement(2335417..2336760) Burkholderia ambifaria MC40-6 6179840 YP_001811818.1 CDS BamMC406_5157 NC_010552.1 2336757 2338943 R KEGG: rso:RSp0292 probable cyclolysin-type secretion composite ATP-binding transmembrane ABC transporter protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; type I secretion system ATPase complement(2336757..2338943) Burkholderia ambifaria MC40-6 6179764 YP_001811819.1 CDS BamMC406_5158 NC_010552.1 2339047 2343651 R PFAM: Hemolysin-type calcium-binding region; KEGG: amr:AM1_2221 hemolysin-type calcium-binding region protein; hemolysin-type calcium-binding protein complement(2339047..2343651) Burkholderia ambifaria MC40-6 6179765 YP_001811820.1 CDS BamMC406_5159 NC_010552.1 2343749 2344360 R hypothetical protein complement(2343749..2344360) Burkholderia ambifaria MC40-6 6179766 YP_001811821.1 CDS BamMC406_5160 NC_010552.1 2344936 2346447 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4630 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2344936..2346447) Burkholderia ambifaria MC40-6 6180120 YP_001811822.1 CDS BamMC406_5161 NC_010552.1 2346923 2348878 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_4632 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2346923..2348878 Burkholderia ambifaria MC40-6 6180121 YP_001811823.1 CDS BamMC406_5162 NC_010552.1 2348997 2349671 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_4633 transcriptional regulator, TetR family; TetR family transcriptional regulator 2348997..2349671 Burkholderia ambifaria MC40-6 6180122 YP_001811824.1 CDS BamMC406_5163 NC_010552.1 2349801 2351582 R SMART: phospholipase D/Transphosphatidylase; KEGG: bam:Bamb_4634 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(2349801..2351582) Burkholderia ambifaria MC40-6 6179638 YP_001811825.1 CDS BamMC406_5164 NC_010552.1 2351686 2352444 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: bam:Bamb_4635 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(2351686..2352444) Burkholderia ambifaria MC40-6 6179639 YP_001811826.1 CDS BamMC406_5165 NC_010552.1 2352650 2352835 D KEGG: bam:Bamb_4636 hypothetical protein; hypothetical protein 2352650..2352835 Burkholderia ambifaria MC40-6 6179640 YP_001811827.1 CDS BamMC406_5166 NC_010552.1 2353114 2353983 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_4637 protein of unknown function DUF6, transmembrane; hypothetical protein 2353114..2353983 Burkholderia ambifaria MC40-6 6181359 YP_001811828.1 CDS nadE NC_010552.1 2354218 2355066 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2354218..2355066 Burkholderia ambifaria MC40-6 6181360 YP_001811829.1 CDS BamMC406_5168 NC_010552.1 2355139 2356815 R PFAM: peptidase S10 serine carboxypeptidase; KEGG: bam:Bamb_4639 peptidase S10, serine carboxypeptidase; peptidase S10 serine carboxypeptidase complement(2355139..2356815) Burkholderia ambifaria MC40-6 6181361 YP_001811830.1 CDS BamMC406_5169 NC_010552.1 2356889 2358490 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Peptidase S53 propeptide; KEGG: bam:Bamb_4640 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S53 propeptide complement(2356889..2358490) Burkholderia ambifaria MC40-6 6180654 YP_001811831.1 CDS BamMC406_5170 NC_010552.1 2358753 2359376 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_4641 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(2358753..2359376) Burkholderia ambifaria MC40-6 6180655 YP_001811832.1 CDS BamMC406_5171 NC_010552.1 2359511 2359975 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_4642 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2359511..2359975 Burkholderia ambifaria MC40-6 6180656 YP_001811833.1 CDS BamMC406_5172 NC_010552.1 2360101 2361012 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4643 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2360101..2361012) Burkholderia ambifaria MC40-6 6181079 YP_001811834.1 CDS BamMC406_5173 NC_010552.1 2361149 2362105 D TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: bur:Bcep18194_B0366 putative agmatinase; agmatinase 2361149..2362105 Burkholderia ambifaria MC40-6 6181080 YP_001811835.1 CDS BamMC406_5174 NC_010552.1 2362158 2363483 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4645 major facilitator superfamily MFS_1; major facilitator transporter 2362158..2363483 Burkholderia ambifaria MC40-6 6181081 YP_001811836.1 CDS BamMC406_5175 NC_010552.1 2363596 2365890 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(2363596..2365890) Burkholderia ambifaria MC40-6 6180106 YP_001811837.1 CDS BamMC406_5176 NC_010552.1 2366019 2366927 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4647 transcriptional regulator, LysR family; LysR family transcriptional regulator 2366019..2366927 Burkholderia ambifaria MC40-6 6180107 YP_001811838.1 CDS BamMC406_5177 NC_010552.1 2366950 2367672 R KEGG: bam:Bamb_4648 hypothetical protein; hypothetical protein complement(2366950..2367672) Burkholderia ambifaria MC40-6 6180108 YP_001811839.1 CDS BamMC406_5178 NC_010552.1 2367686 2367895 R KEGG: bam:Bamb_4649 hypothetical protein; hypothetical protein complement(2367686..2367895) Burkholderia ambifaria MC40-6 6181323 YP_001811840.1 CDS BamMC406_5179 NC_010552.1 2368115 2368702 D PFAM: Phosphoglycerate mutase; KEGG: bam:Bamb_4650 phosphoglycerate mutase; phosphoglycerate mutase 2368115..2368702 Burkholderia ambifaria MC40-6 6181324 YP_001811841.1 CDS BamMC406_5180 NC_010552.1 2368842 2370434 D PFAM: phosphate transporter; KEGG: bam:Bamb_4651 phosphate transporter; phosphate transporter 2368842..2370434 Burkholderia ambifaria MC40-6 6181325 YP_001811842.1 CDS BamMC406_5181 NC_010552.1 2370881 2371624 D KEGG: bam:Bamb_4653 hypothetical protein; hypothetical protein 2370881..2371624 Burkholderia ambifaria MC40-6 6180303 YP_001811843.1 CDS BamMC406_5182 NC_010552.1 2372006 2373430 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4654 drug resistance transporter, EmrB/QacA subfamily; major facilitator transporter complement(2372006..2373430) Burkholderia ambifaria MC40-6 6180304 YP_001811844.1 CDS BamMC406_5183 NC_010552.1 2379845 2380396 R KEGG: bur:Bcep18194_B0354 HD phosphohydrolase-like; HD phosphohydrolase-like protein complement(2379845..2380396) Burkholderia ambifaria MC40-6 6181046 YP_001811845.1 CDS BamMC406_5184 NC_010552.1 2380401 2381855 R TIGRFAM: phosphonoacetaldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4656 aldehyde dehydrogenase; phosphonoacetaldehyde dehydrogenase complement(2380401..2381855) Burkholderia ambifaria MC40-6 6180893 YP_001811846.1 CDS BamMC406_5185 NC_010552.1 2381852 2383162 R TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bam:Bamb_4657 phosphonoacetate hydrolase; phosphonoacetate hydrolase complement(2381852..2383162) Burkholderia ambifaria MC40-6 6180894 YP_001811847.1 CDS BamMC406_5186 NC_010552.1 2383159 2384019 R TIGRFAM: 2-aminoethylphosphonate ABC transport system, membrane component PhnV; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4658 binding-protein-dependent transport systems inner membrane component; 2-aminoethylphosphonate ABC transporter membrane protein PhnV complement(2383159..2384019) Burkholderia ambifaria MC40-6 6179978 YP_001811848.1 CDS BamMC406_5187 NC_010552.1 2384009 2384929 R TIGRFAM: 2-aminoethylphosphonate ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4659 binding-protein-dependent transport systems inner membrane component; 2-aminoethylphosphonate ABC transporter permease complement(2384009..2384929) Burkholderia ambifaria MC40-6 6179979 YP_001811849.1 CDS BamMC406_5188 NC_010552.1 2384907 2386010 R KEGG: bam:Bamb_4660 ABC transporter related; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; 2-aminoethylphosphonate ABC transporter ATP-binding protein PhnT complement(2384907..2386010) Burkholderia ambifaria MC40-6 6179980 YP_001811850.1 CDS BamMC406_5189 NC_010552.1 2386045 2387133 R TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_4661 ABC transporter, periplasmic binding protein, ThiB subfamily; 2-aminoethylphosphonate ABC transporter 2-aminoethylphosphonate binding protein complement(2386045..2387133) Burkholderia ambifaria MC40-6 6179462 YP_001811851.1 CDS BamMC406_5190 NC_010552.1 2387389 2388510 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 2387389..2388510 Burkholderia ambifaria MC40-6 6179463 YP_001811852.1 CDS BamMC406_5191 NC_010552.1 2388599 2389948 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4663 major facilitator superfamily MFS_1; major facilitator transporter complement(2388599..2389948) Burkholderia ambifaria MC40-6 6179464 YP_001811853.1 CDS BamMC406_5192 NC_010552.1 2389983 2390837 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(2389983..2390837) Burkholderia ambifaria MC40-6 6179880 YP_001811854.1 CDS BamMC406_5193 NC_010552.1 2390834 2391289 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2390834..2391289) Burkholderia ambifaria MC40-6 6179881 YP_001811855.1 CDS BamMC406_5194 NC_010552.1 2391546 2393438 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_4666 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2391546..2393438 Burkholderia ambifaria MC40-6 6179882 YP_001811856.1 CDS BamMC406_5195 NC_010552.1 2393725 2393988 D KEGG: bam:Bamb_4667 hypothetical protein; hypothetical protein 2393725..2393988 Burkholderia ambifaria MC40-6 6179900 YP_001811857.1 CDS BamMC406_5196 NC_010552.1 2394064 2394858 R PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: bam:Bamb_4668 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2394064..2394858) Burkholderia ambifaria MC40-6 6179901 YP_001811858.1 CDS BamMC406_5197 NC_010552.1 2395498 2396634 D PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_4669 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2395498..2396634 Burkholderia ambifaria MC40-6 6179902 YP_001811859.1 CDS BamMC406_5198 NC_010552.1 2396955 2398265 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4670 major facilitator superfamily MFS_1; major facilitator transporter 2396955..2398265 Burkholderia ambifaria MC40-6 6180218 YP_001811860.1 CDS BamMC406_5199 NC_010552.1 2398397 2398834 R PFAM: DoxX family protein; KEGG: bam:Bamb_4671 DoxX family protein; DoxX family protein complement(2398397..2398834) Burkholderia ambifaria MC40-6 6180219 YP_001811861.1 CDS BamMC406_5200 NC_010552.1 2399061 2399516 R PFAM: RbsD or FucU transport; KEGG: bam:Bamb_4672 RbsD or FucU transport; RbsD or FucU transport complement(2399061..2399516) Burkholderia ambifaria MC40-6 6180220 YP_001811862.1 CDS BamMC406_5201 NC_010552.1 2399597 2399989 R KEGG: bam:Bamb_4673 hypothetical protein; hypothetical protein complement(2399597..2399989) Burkholderia ambifaria MC40-6 6180224 YP_001811863.1 CDS BamMC406_5202 NC_010552.1 2400162 2400647 D KEGG: bam:Bamb_4674 hypothetical protein; hypothetical protein 2400162..2400647 Burkholderia ambifaria MC40-6 6180225 YP_001811864.1 CDS BamMC406_5203 NC_010552.1 2400714 2402267 R KEGG: bam:Bamb_4675 galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase complement(2400714..2402267) Burkholderia ambifaria MC40-6 6180226 YP_001811865.1 CDS BamMC406_5204 NC_010552.1 2402506 2403420 D catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 2402506..2403420 Burkholderia ambifaria MC40-6 6180450 YP_001811866.1 CDS BamMC406_5205 NC_010552.1 2403557 2404108 R KEGG: bam:Bamb_4677 hypothetical protein; hypothetical protein complement(2403557..2404108) Burkholderia ambifaria MC40-6 6180451 YP_001811867.1 CDS BamMC406_5206 NC_010552.1 2404383 2405960 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4679 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2404383..2405960) Burkholderia ambifaria MC40-6 6180452 YP_001811868.1 CDS BamMC406_5207 NC_010552.1 2406155 2407612 D TIGRFAM: d-galactonate transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4680 D-galactonate transporter; d-galactonate transporter 2406155..2407612 Burkholderia ambifaria MC40-6 6180486 YP_001811869.1 CDS BamMC406_5208 NC_010552.1 2407675 2408400 R PFAM: peptidase M50; KEGG: bam:Bamb_4681 peptidase M50; peptidase M50 complement(2407675..2408400) Burkholderia ambifaria MC40-6 6180487 YP_001811870.1 CDS BamMC406_5209 NC_010552.1 2408397 2409350 R KEGG: bam:Bamb_4682 uncharacterized membrane-anchored protein; membrane-anchored protein complement(2408397..2409350) Burkholderia ambifaria MC40-6 6180488 YP_001811871.1 CDS BamMC406_5210 NC_010552.1 2409452 2409580 D hypothetical protein 2409452..2409580 Burkholderia ambifaria MC40-6 6180547 YP_001811872.1 CDS BamMC406_5211 NC_010552.1 2409617 2410465 D PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_4683 transcriptional regulator, XRE family; XRE family transcriptional regulator 2409617..2410465 Burkholderia ambifaria MC40-6 6180548 YP_001811873.1 CDS BamMC406_5212 NC_010552.1 2411001 2412728 D PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bur:Bcep18194_B0323 YadA-like haemagluttinin; YadA domain-containing protein 2411001..2412728 Burkholderia ambifaria MC40-6 6180549 YP_001811874.1 CDS BamMC406_5213 NC_010552.1 2412815 2414026 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_4684 acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase type 2 complement(2412815..2414026) Burkholderia ambifaria MC40-6 6180689 YP_001811875.1 CDS BamMC406_5214 NC_010552.1 2414023 2414880 R KEGG: bam:Bamb_4685 hypothetical protein; hypothetical protein complement(2414023..2414880) Burkholderia ambifaria MC40-6 6180690 YP_001811876.1 CDS BamMC406_5215 NC_010552.1 2414937 2415593 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4686 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2414937..2415593) Burkholderia ambifaria MC40-6 6180691 YP_001811877.1 CDS BamMC406_5216 NC_010552.1 2415586 2416761 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_4687 ABC transporter related; ABC transporter-like protein complement(2415586..2416761) Burkholderia ambifaria MC40-6 6180737 YP_001811878.1 CDS BamMC406_5217 NC_010552.1 2416780 2418198 R KEGG: bam:Bamb_4688 flavin-dependent oxidoreductase; flavin-dependent oxidoreductase complement(2416780..2418198) Burkholderia ambifaria MC40-6 6180738 YP_001811879.1 CDS BamMC406_5218 NC_010552.1 2418209 2419069 R PFAM: NLPA lipoprotein; KEGG: bam:Bamb_4689 NlpA lipoprotein; NLPA lipoprotein complement(2418209..2419069) Burkholderia ambifaria MC40-6 6180739 YP_001811880.1 CDS BamMC406_5219 NC_010552.1 2419489 2420853 D PFAM: Citrate carrier protein; KEGG: bch:Bcen2424_5340 citrate carrier protein; citrate carrier protein 2419489..2420853 Burkholderia ambifaria MC40-6 6181309 YP_001811881.1 CDS BamMC406_5220 NC_010552.1 2421013 2422908 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_4691 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2421013..2422908 Burkholderia ambifaria MC40-6 6181310 YP_001811882.1 CDS BamMC406_5221 NC_010552.1 2422898 2424259 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bam:Bamb_4692 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator 2422898..2424259 Burkholderia ambifaria MC40-6 6181311 YP_001811883.1 CDS BamMC406_5222 NC_010552.1 2424285 2424614 D KEGG: bam:Bamb_4693 hypothetical protein; hypothetical protein 2424285..2424614 Burkholderia ambifaria MC40-6 6181292 YP_001811884.1 CDS BamMC406_5223 NC_010552.1 2424638 2425483 R KEGG: bch:Bcen2424_5344 hypothetical protein; hypothetical protein complement(2424638..2425483) Burkholderia ambifaria MC40-6 6181293 YP_001811885.1 CDS BamMC406_5224 NC_010552.1 2425480 2426619 R KEGG: bch:Bcen2424_5345 hypothetical protein; RpiR family transcriptional regulator complement(2425480..2426619) Burkholderia ambifaria MC40-6 6180471 YP_001811886.1 CDS BamMC406_5225 NC_010552.1 2426956 2427807 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_4694 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2426956..2427807 Burkholderia ambifaria MC40-6 6180472 YP_001811887.1 CDS BamMC406_5226 NC_010552.1 2427901 2428341 R PFAM: transmembrane pair domain protein; KEGG: bam:Bamb_4695 transmembrane pair domain protein; transmembrane pair domain-containing protein complement(2427901..2428341) Burkholderia ambifaria MC40-6 6180473 YP_001811888.1 CDS BamMC406_5227 NC_010552.1 2428440 2429330 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4696 transcriptional regulator, LysR family; LysR family transcriptional regulator 2428440..2429330 Burkholderia ambifaria MC40-6 6180401 YP_001811889.1 CDS BamMC406_5228 NC_010552.1 2429511 2431052 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_4697 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(2429511..2431052) Burkholderia ambifaria MC40-6 6180402 YP_001811890.1 CDS BamMC406_5229 NC_010552.1 2431063 2434263 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bam:Bamb_4698 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2431063..2434263) Burkholderia ambifaria MC40-6 6180403 YP_001811891.1 CDS BamMC406_5230 NC_010552.1 2434309 2435526 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_4699 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2434309..2435526) Burkholderia ambifaria MC40-6 6180233 YP_001811892.1 CDS BamMC406_5231 NC_010552.1 2435558 2436418 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bam:Bamb_4700 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(2435558..2436418) Burkholderia ambifaria MC40-6 6180234 YP_001811893.1 CDS BamMC406_5232 NC_010552.1 2436589 2437593 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4701 transcriptional regulator, LysR family; LysR family transcriptional regulator 2436589..2437593 Burkholderia ambifaria MC40-6 6180235 YP_001811894.1 CDS BamMC406_5233 NC_010552.1 2437647 2438327 R KEGG: bam:Bamb_4702 hypothetical protein; hypothetical protein complement(2437647..2438327) Burkholderia ambifaria MC40-6 6179782 YP_001811895.1 CDS BamMC406_5234 NC_010552.1 2438563 2438880 R KEGG: bam:Bamb_4703 H-NS histone family protein; H-NS histone family protein complement(2438563..2438880) Burkholderia ambifaria MC40-6 6179783 YP_001811896.1 CDS BamMC406_5235 NC_010552.1 2439133 2439819 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_4704 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2439133..2439819 Burkholderia ambifaria MC40-6 6179784 YP_001811897.1 CDS BamMC406_5236 NC_010552.1 2440140 2440436 D KEGG: bam:Bamb_4705 hypothetical protein; hypothetical protein 2440140..2440436 Burkholderia ambifaria MC40-6 6180773 YP_001811898.1 CDS BamMC406_5237 NC_010552.1 2440673 2441752 R PFAM: purine nucleoside permease; KEGG: bam:Bamb_4706 purine nucleoside permease; purine nucleoside permease complement(2440673..2441752) Burkholderia ambifaria MC40-6 6180774 YP_001811899.1 CDS BamMC406_5238 NC_010552.1 2442160 2443224 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(2442160..2443224) Burkholderia ambifaria MC40-6 6180775 YP_001811900.1 CDS BamMC406_5239 NC_010552.1 2443333 2444169 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_4709 protein of unknown function DUF6, transmembrane; hypothetical protein 2443333..2444169 Burkholderia ambifaria MC40-6 6179407 YP_001811901.1 CDS BamMC406_5240 NC_010552.1 2444392 2445900 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_4710 transcriptional regulator, GntR family; transcriptional regulator complement(2444392..2445900) Burkholderia ambifaria MC40-6 6179408 YP_001811902.1 CDS BamMC406_5241 NC_010552.1 2446026 2447309 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: bam:Bamb_4711 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 2446026..2447309 Burkholderia ambifaria MC40-6 6179409 YP_001811903.1 CDS BamMC406_5242 NC_010552.1 2447400 2448869 D TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4712 succinic semialdehyde dehydrogenase; succinic semialdehyde dehydrogenase 2447400..2448869 Burkholderia ambifaria MC40-6 6180702 YP_001811904.1 CDS BamMC406_5243 NC_010552.1 2448986 2450530 R TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: bam:Bamb_4714 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(2448986..2450530) Burkholderia ambifaria MC40-6 6180703 YP_001811905.1 CDS BamMC406_5244 NC_010552.1 2450804 2452348 R TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: bam:Bamb_4715 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(2450804..2452348) Burkholderia ambifaria MC40-6 6180704 YP_001811906.1 CDS BamMC406_5245 NC_010552.1 2452721 2453248 D PFAM: protein of unknown function DUF523; KEGG: bam:Bamb_4716 protein of unknown function DUF523; hypothetical protein 2452721..2453248 Burkholderia ambifaria MC40-6 6179732 YP_001811907.1 CDS BamMC406_5246 NC_010552.1 2453346 2454548 R catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase complement(2453346..2454548) Burkholderia ambifaria MC40-6 6179733 YP_001811908.1 CDS BamMC406_5247 NC_010552.1 2454776 2455564 D TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_4718 transcriptional regulator, IclR family; IclR family transcriptional regulator 2454776..2455564 Burkholderia ambifaria MC40-6 6179734 YP_001811909.1 CDS BamMC406_5248 NC_010552.1 2455844 2456959 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bch:Bcen2424_5370 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(2455844..2456959) Burkholderia ambifaria MC40-6 6180711 YP_001811910.1 CDS BamMC406_5249 NC_010552.1 2457145 2458476 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4720 major facilitator superfamily MFS_1; major facilitator transporter complement(2457145..2458476) Burkholderia ambifaria MC40-6 6180712 YP_001811911.1 CDS BamMC406_5250 NC_010552.1 2458533 2459723 R KEGG: bam:Bamb_4721 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(2458533..2459723) Burkholderia ambifaria MC40-6 6180713 YP_001811912.1 CDS BamMC406_5251 NC_010552.1 2460369 2460794 D hypothetical protein 2460369..2460794 Burkholderia ambifaria MC40-6 6180227 YP_001811913.1 CDS BamMC406_5252 NC_010552.1 2461373 2462260 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3530 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2461373..2462260) Burkholderia ambifaria MC40-6 6180228 YP_001811914.1 CDS BamMC406_5253 NC_010552.1 2462404 2463156 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3531 short chain dehydrogenase; short chain dehydrogenase 2462404..2463156 Burkholderia ambifaria MC40-6 6180229 YP_001811915.1 CDS BamMC406_5254 NC_010552.1 2463317 2463997 D PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_3532 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2463317..2463997 Burkholderia ambifaria MC40-6 6179299 YP_001811916.1 CDS BamMC406_5255 NC_010552.1 2464306 2465085 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppf:Pput_1844 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2464306..2465085) Burkholderia ambifaria MC40-6 6179300 YP_001811917.1 CDS BamMC406_5256 NC_010552.1 2465292 2466242 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_5641 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2465292..2466242) Burkholderia ambifaria MC40-6 6179301 YP_001811918.1 CDS BamMC406_5257 NC_010552.1 2466372 2467649 D PFAM: ribulose bisphosphate carboxylase large chain; KEGG: dac:Daci_5642 ribulose-bisphosphate carboxylase; RuBisCO-like protein 2466372..2467649 Burkholderia ambifaria MC40-6 6181431 YP_001811919.1 CDS BamMC406_5258 NC_010552.1 2467655 2469064 D KEGG: dac:Daci_5643 type III effector Hrp-dependent outer; type III effector Hrp-dependent outer 2467655..2469064 Burkholderia ambifaria MC40-6 6181432 YP_001811920.1 CDS BamMC406_5259 NC_010552.1 2469301 2470755 D KEGG: mag:amb3174 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2469301..2470755 Burkholderia ambifaria MC40-6 6181433 YP_001811921.1 CDS BamMC406_5261 NC_010552.1 2471838 2473748 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bra:BRADO3834 putative TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (DctQ/DctM domains); TRAP dicarboxylate transporter, DctM subunit complement(2471838..2473748) Burkholderia ambifaria MC40-6 6181264 YP_001811922.1 CDS BamMC406_5262 NC_010552.1 2473745 2474776 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2782 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein; TRAP dicarboxylate transporter, DctP subunit complement(2473745..2474776) Burkholderia ambifaria MC40-6 6181247 YP_001811923.1 CDS BamMC406_5263 NC_010552.1 2475687 2476373 D PFAM: LysR substrate-binding; KEGG: bam:Bamb_4725 transcriptional regulator, LysR family; LysR family transcriptional regulator 2475687..2476373 Burkholderia ambifaria MC40-6 6181248 YP_001811924.1 CDS BamMC406_5264 NC_010552.1 2477052 2478668 D PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: bam:Bamb_4726 tryptophan halogenase; tryptophan halogenase 2477052..2478668 Burkholderia ambifaria MC40-6 6181497 YP_001811925.1 CDS BamMC406_5265 NC_010552.1 2478668 2479753 D PFAM: Domain of unknown function DUF1864; KEGG: bam:Bamb_4727 PrnB; PrnB; hypothetical protein 2478668..2479753 Burkholderia ambifaria MC40-6 6181498 YP_001811926.1 CDS BamMC406_5266 NC_010552.1 2479798 2481498 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: bam:Bamb_4728 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2479798..2481498 Burkholderia ambifaria MC40-6 6181499 YP_001811927.1 CDS BamMC406_5267 NC_010552.1 2481524 2482636 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_4729 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 2481524..2482636 Burkholderia ambifaria MC40-6 6180973 YP_001811928.1 CDS BamMC406_5268 NC_010552.1 2482736 2483737 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_4730 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(2482736..2483737) Burkholderia ambifaria MC40-6 6180974 YP_001811929.1 CDS BamMC406_5269 NC_010552.1 2483805 2484668 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_4731 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2483805..2484668) Burkholderia ambifaria MC40-6 6180975 YP_001811930.1 CDS BamMC406_5270 NC_010552.1 2485069 2485857 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4735 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2485069..2485857) Burkholderia ambifaria MC40-6 6180851 YP_001811931.1 CDS BamMC406_5271 NC_010552.1 2485915 2486997 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bam:Bamb_4736 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase complement(2485915..2486997) Burkholderia ambifaria MC40-6 6180852 YP_001811932.1 CDS BamMC406_5272 NC_010552.1 2487240 2487761 D KEGG: bam:Bamb_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator 2487240..2487761 Burkholderia ambifaria MC40-6 6180853 YP_001811933.1 CDS BamMC406_5273 NC_010552.1 2487815 2488540 R PFAM: regulatory protein TetR; KEGG: bmu:Bmul_5804 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2487815..2488540) Burkholderia ambifaria MC40-6 6180967 YP_001811934.1 CDS BamMC406_5274 NC_010552.1 2488957 2490090 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bur:Bcep18194_A5035 secretion protein HlyD family; RND family efflux transporter MFP subunit 2488957..2490090 Burkholderia ambifaria MC40-6 6180968 YP_001811935.1 CDS BamMC406_5275 NC_010552.1 2490087 2493251 D PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_A1967 multidrug efflux pump, RND family, AcrB/AcrD/AcrF subfamily; acriflavin resistance protein 2490087..2493251 Burkholderia ambifaria MC40-6 6180969 YP_001811936.1 CDS BamMC406_5276 NC_010552.1 2493248 2494714 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bmu:Bmul_5800 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 2493248..2494714 Burkholderia ambifaria MC40-6 6179562 YP_001811937.1 CDS BamMC406_5277 NC_010552.1 2494837 2496219 D TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: bmu:Bmul_5801 integral membrane protein, PqiA family; PqiA family integral membrane protein 2494837..2496219 Burkholderia ambifaria MC40-6 6179563 YP_001811938.1 CDS BamMC406_5278 NC_010552.1 2496260 2497855 D PFAM: Mammalian cell entry related domain protein; KEGG: bmu:Bmul_5802 mammalian cell entry related domain protein; hypothetical protein 2496260..2497855 Burkholderia ambifaria MC40-6 6179564 YP_001811939.1 CDS BamMC406_5279 NC_010552.1 2497852 2498553 D PFAM: protein of unknown function DUF330; KEGG: bmu:Bmul_5803 protein of unknown function DUF330; hypothetical protein 2497852..2498553 Burkholderia ambifaria MC40-6 6179681 YP_001811940.1 CDS BamMC406_5280 NC_010552.1 2498688 2499215 D PFAM: regulatory protein TetR; KEGG: bmu:Bmul_5812 transcriptional regulator, TetR family; TetR family transcriptional regulator 2498688..2499215 Burkholderia ambifaria MC40-6 6179682 YP_001811941.1 CDS BamMC406_5281 NC_010552.1 2499340 2500113 R PFAM: regulatory protein TetR; KEGG: bmu:Bmul_5804 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2499340..2500113) Burkholderia ambifaria MC40-6 6179683 YP_001811942.1 CDS BamMC406_5282 NC_010552.1 2500589 2501659 D KEGG: bmu:Bmul_5806 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2500589..2501659 Burkholderia ambifaria MC40-6 6179856 YP_001811943.1 CDS BamMC406_5283 NC_010552.1 2501695 2502651 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bmu:Bmul_5807 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 2501695..2502651 Burkholderia ambifaria MC40-6 6179857 YP_001811944.1 CDS BamMC406_5284 NC_010552.1 2502648 2504618 D PFAM: AMP-dependent synthetase and ligase; KEGG: bch:Bcen2424_5777 acyl-CoA synthetase; AMP-binding domain-containing protein 2502648..2504618 Burkholderia ambifaria MC40-6 6179858 YP_001811945.1 CDS BamMC406_5285 NC_010552.1 2504759 2505496 D PFAM: OmpW family protein; KEGG: reu:Reut_A3378 OmpW; OmpW family protein 2504759..2505496 Burkholderia ambifaria MC40-6 6180570 YP_001811946.1 CDS BamMC406_5286 NC_010552.1 2505551 2508529 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY3535 putative anaerobic dehydrogenase; molybdopterin oxidoreductase 2505551..2508529 Burkholderia ambifaria MC40-6 6180571 YP_001811947.1 CDS BamMC406_5287 NC_010552.1 2508540 2509406 D KEGG: dsy:DSY0778 putative oxidoreductase iron-sulfur subunit; pyrogallol hydroxytransferase 2508540..2509406 Burkholderia ambifaria MC40-6 6180572 YP_001811948.1 CDS BamMC406_5288 NC_010552.1 2509559 2510119 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_4743 transcriptional regulator, TetR family; TetR family transcriptional regulator 2509559..2510119 Burkholderia ambifaria MC40-6 6181064 YP_001811949.1 CDS BamMC406_5289 NC_010552.1 2510165 2511148 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_4744 alcohol dehydrogenase, zinc-binding domain protein; quinone oxidoreductase 2510165..2511148 Burkholderia ambifaria MC40-6 6181065 YP_001811950.1 CDS BamMC406_5290 NC_010552.1 2511228 2511806 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_4745 uncharacterized peroxidase-related enzyme; peroxidase-like protein 2511228..2511806 Burkholderia ambifaria MC40-6 6181066 YP_001811951.1 CDS BamMC406_5291 NC_010552.1 2511931 2512812 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4746 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2511931..2512812) Burkholderia ambifaria MC40-6 6181437 YP_001811952.1 CDS BamMC406_5292 NC_010552.1 2512986 2513564 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_4747 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2512986..2513564) Burkholderia ambifaria MC40-6 6181438 YP_001811953.1 CDS BamMC406_5293 NC_010552.1 2513768 2515243 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2513768..2515243 Burkholderia ambifaria MC40-6 6181439 YP_001811954.1 CDS BamMC406_5294 NC_010552.1 2515366 2516310 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4749 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2515366..2516310) Burkholderia ambifaria MC40-6 6181125 YP_001811955.1 CDS BamMC406_5295 NC_010552.1 2516421 2517623 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4750 major facilitator superfamily MFS_1; major facilitator transporter 2516421..2517623 Burkholderia ambifaria MC40-6 6181126 YP_001811956.1 CDS BamMC406_5296 NC_010552.1 2517653 2517976 D KEGG: bam:Bamb_4751 hypothetical protein; hypothetical protein 2517653..2517976 Burkholderia ambifaria MC40-6 6181127 YP_001811957.1 CDS BamMC406_5297 NC_010552.1 2517993 2518943 D PFAM: Luciferase-like monooxygenase; KEGG: bam:Bamb_4752 luciferase family protein; luciferase-like monooxygenase 2517993..2518943 Burkholderia ambifaria MC40-6 6181198 YP_001811958.1 CDS dkgB NC_010552.1 2519095 2519901 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 2519095..2519901 Burkholderia ambifaria MC40-6 6181199 YP_001811959.1 CDS BamMC406_5299 NC_010552.1 2519967 2521082 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bam:Bamb_4754 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 2519967..2521082 Burkholderia ambifaria MC40-6 6181200 YP_001811960.1 CDS BamMC406_5300 NC_010552.1 2521114 2522118 D PFAM: aldo/keto reductase; KEGG: bam:Bamb_4755 aldo/keto reductase; pyridoxal 4-dehydrogenase 2521114..2522118 Burkholderia ambifaria MC40-6 6180836 YP_001811961.1 CDS BamMC406_5301 NC_010552.1 2522308 2522844 D KEGG: bam:Bamb_4756 hypothetical protein; hypothetical protein 2522308..2522844 Burkholderia ambifaria MC40-6 6180837 YP_001811962.1 CDS BamMC406_5302 NC_010552.1 2522954 2523619 R PFAM: O-methyltransferase family 3; KEGG: bam:Bamb_4757 O-methyltransferase, family 3; O-methyltransferase family protein complement(2522954..2523619) Burkholderia ambifaria MC40-6 6180838 YP_001811963.1 CDS BamMC406_5303 NC_010552.1 2523713 2524345 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_4758 transcriptional regulator, TetR family; TetR family transcriptional regulator 2523713..2524345 Burkholderia ambifaria MC40-6 6180297 YP_001811964.1 CDS BamMC406_5304 NC_010552.1 2524859 2526247 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bam:Bamb_4759 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 2524859..2526247 Burkholderia ambifaria MC40-6 6180298 YP_001811965.1 CDS BamMC406_5305 NC_010552.1 2526503 2527555 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_3911 transposase, IS605 OrfB family; IS605 family transposase OrfB complement(2526503..2527555) Burkholderia ambifaria MC40-6 6180299 YP_001811966.1 CDS BamMC406_5306 NC_010552.1 2527675 2528268 D KEGG: bam:Bamb_4760 hypothetical protein; hypothetical protein 2527675..2528268 Burkholderia ambifaria MC40-6 6180020 YP_001811967.1 CDS BamMC406_5307 NC_010552.1 2528359 2529279 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4764 transcriptional regulator, LysR family; LysR family transcriptional regulator 2528359..2529279 Burkholderia ambifaria MC40-6 6180021 YP_001811968.1 CDS BamMC406_5308 NC_010552.1 2529506 2530288 D TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_4765 cationic amino acid ABC transporter, periplasmic binding protein; cationic amino acid ABC transporter periplasmic binding protein 2529506..2530288 Burkholderia ambifaria MC40-6 6180022 YP_001811969.1 CDS BamMC406_5309 NC_010552.1 2530547 2531662 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bam:Bamb_4766 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 2530547..2531662 Burkholderia ambifaria MC40-6 6179862 YP_001811970.1 CDS BamMC406_5310 NC_010552.1 2531834 2532640 R TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bam:Bamb_4767 lipoprotein, YaeC family; YaeC family lipoprotein complement(2531834..2532640) Burkholderia ambifaria MC40-6 6179863 YP_001811971.1 CDS BamMC406_5311 NC_010552.1 2532948 2534108 D PFAM: porin Gram-negative type; KEGG: bam:Bamb_4768 porin, gram-negative type; porin 2532948..2534108 Burkholderia ambifaria MC40-6 6179864 YP_001811972.1 CDS BamMC406_5312 NC_010552.1 2534317 2534577 D KEGG: bam:Bamb_4769 hypothetical protein; hypothetical protein 2534317..2534577 Burkholderia ambifaria MC40-6 6179571 YP_001811973.1 CDS BamMC406_5313 NC_010552.1 2534701 2535084 D KEGG: bam:Bamb_4770 hypothetical protein; hypothetical protein 2534701..2535084 Burkholderia ambifaria MC40-6 6179572 YP_001811974.1 CDS BamMC406_5314 NC_010552.1 2535156 2535383 D KEGG: bam:Bamb_4771 hypothetical protein; hypothetical protein 2535156..2535383 Burkholderia ambifaria MC40-6 6179573 YP_001811975.1 CDS BamMC406_5315 NC_010552.1 2535618 2537921 D TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_4772 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 2535618..2537921 Burkholderia ambifaria MC40-6 6179451 YP_001811976.1 CDS BamMC406_5316 NC_010552.1 2537971 2539062 D PFAM: Haemin-degrading family protein; KEGG: bam:Bamb_4773 haemin-degrading family protein; hemin-degrading family protein 2537971..2539062 Burkholderia ambifaria MC40-6 6179452 YP_001811977.1 CDS BamMC406_5317 NC_010552.1 2539095 2539967 D PFAM: periplasmic binding protein; KEGG: bam:Bamb_4774 periplasmic binding protein; periplasmic binding protein 2539095..2539967 Burkholderia ambifaria MC40-6 6179453 YP_001811978.1 CDS BamMC406_5318 NC_010552.1 2539983 2541080 D PFAM: transport system permease protein; KEGG: bam:Bamb_4775 transport system permease protein; transport system permease 2539983..2541080 Burkholderia ambifaria MC40-6 6180265 YP_001811979.1 CDS hmuV NC_010552.1 2541100 2541930 D with HmuTU is involved in the import of hemin; hemin importer ATP-binding subunit 2541100..2541930 Burkholderia ambifaria MC40-6 6180266 YP_001811980.1 CDS BamMC406_5320 NC_010552.1 2542028 2542411 D KEGG: bam:Bamb_4777 hypothetical protein; hypothetical protein 2542028..2542411 Burkholderia ambifaria MC40-6 6180267 YP_001811981.1 CDS BamMC406_5321 NC_010552.1 2542443 2543054 R PFAM: protein of unknown function UPF0126; KEGG: bam:Bamb_4778 protein of unknown function UPF0126; hypothetical protein complement(2542443..2543054) Burkholderia ambifaria MC40-6 6181506 YP_001811982.1 CDS BamMC406_5322 NC_010552.1 2543063 2545207 R KEGG: bam:Bamb_4779 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein complement(2543063..2545207) Burkholderia ambifaria MC40-6 6181507 YP_001811983.1 CDS BamMC406_5323 NC_010552.1 2545357 2546217 D PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: bam:Bamb_4780 aminoglycoside/hydroxyurea antibiotic resistance kinase; aminoglycoside/hydroxyurea antibiotic resistance kinase 2545357..2546217 Burkholderia ambifaria MC40-6 6181508 YP_001811984.1 CDS BamMC406_5324 NC_010552.1 2546424 2547179 R KEGG: pna:Pnap_4963 hypothetical protein; hypothetical protein complement(2546424..2547179) Burkholderia ambifaria MC40-6 6180239 YP_001811985.1 CDS BamMC406_5325 NC_010552.1 2547508 2547930 D KEGG: shm:Shewmr7_0133 hypothetical protein; hypothetical protein 2547508..2547930 Burkholderia ambifaria MC40-6 6180240 YP_001811986.1 CDS BamMC406_5326 NC_010552.1 2548071 2550005 R KEGG: amt:Amet_0846 hypothetical protein; hypothetical protein complement(2548071..2550005) Burkholderia ambifaria MC40-6 6180241 YP_001811987.1 CDS BamMC406_5327 NC_010552.1 2549993 2550550 R KEGG: amt:Amet_0845 hypothetical protein; hypothetical protein complement(2549993..2550550) Burkholderia ambifaria MC40-6 6180006 YP_001811988.1 CDS BamMC406_5328 NC_010552.1 2550525 2551769 R KEGG: amt:Amet_0844 hypothetical protein; hypothetical protein complement(2550525..2551769) Burkholderia ambifaria MC40-6 6180007 YP_001811989.1 CDS BamMC406_5329 NC_010552.1 2552324 2553160 R TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_4787 hypothetical protein; hypothetical protein complement(2552324..2553160) Burkholderia ambifaria MC40-6 6180008 YP_001811990.1 CDS BamMC406_5330 NC_010552.1 2553856 2554293 R PFAM: 17 kDa surface antigen; KEGG: bam:Bamb_4788 17 kDa surface antigen; 17 kDa surface antigen complement(2553856..2554293) Burkholderia ambifaria MC40-6 6180369 YP_001811991.1 CDS BamMC406_5331 NC_010552.1 2554662 2555321 R PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: bam:Bamb_4789 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase complement(2554662..2555321) Burkholderia ambifaria MC40-6 6180370 YP_001811992.1 CDS BamMC406_5332 NC_010552.1 2555497 2555661 R KEGG: bam:Bamb_4790 hypothetical protein; hypothetical protein complement(2555497..2555661) Burkholderia ambifaria MC40-6 6180371 YP_001811993.1 CDS BamMC406_5333 NC_010552.1 2555895 2556314 R PFAM: histidine triad (HIT) protein; KEGG: bam:Bamb_4791 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2555895..2556314) Burkholderia ambifaria MC40-6 6179445 YP_001811994.1 CDS BamMC406_5334 NC_010552.1 2556570 2557973 D PFAM: beta-lactamase; KEGG: bam:Bamb_4792 beta-lactamase; beta-lactamase 2556570..2557973 Burkholderia ambifaria MC40-6 6179446 YP_001811995.1 CDS BamMC406_5335 NC_010552.1 2558043 2558666 R PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_4793 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(2558043..2558666) Burkholderia ambifaria MC40-6 6179447 YP_001811996.1 CDS BamMC406_5336 NC_010552.1 2558807 2559277 R KEGG: bam:Bamb_4794 integral membrane protein-like protein; hypothetical protein complement(2558807..2559277) Burkholderia ambifaria MC40-6 6180518 YP_001811997.1 CDS BamMC406_5337 NC_010552.1 2559274 2560527 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: bam:Bamb_4795 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2559274..2560527) Burkholderia ambifaria MC40-6 6180519 YP_001811998.1 CDS BamMC406_5338 NC_010552.1 2560670 2561203 R KEGG: bam:Bamb_4796 transcriptional regulators-like protein; transcriptional regulators-like protein complement(2560670..2561203) Burkholderia ambifaria MC40-6 6180520 YP_001811999.1 CDS BamMC406_5339 NC_010552.1 2561409 2562611 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2561409..2562611 Burkholderia ambifaria MC40-6 6181153 YP_001812000.1 CDS BamMC406_5340 NC_010552.1 2562666 2563370 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_4798 short chain dehydrogenase; short chain dehydrogenase complement(2562666..2563370) Burkholderia ambifaria MC40-6 6181154 YP_001812001.1 CDS BamMC406_5341 NC_010552.1 2563671 2564255 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_4799 transcriptional regulator, TetR family; TetR family transcriptional regulator 2563671..2564255 Burkholderia ambifaria MC40-6 6181155 YP_001812002.1 CDS BamMC406_5342 NC_010552.1 2564287 2564865 R KEGG: bam:Bamb_4800 hypothetical protein; hypothetical protein complement(2564287..2564865) Burkholderia ambifaria MC40-6 6179305 YP_001812003.1 CDS BamMC406_5343 NC_010552.1 2565075 2565560 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bam:Bamb_4802 activator of HSP90 ATPase 1 family protein; activator of Hsp90 ATPase 1 family protein 2565075..2565560 Burkholderia ambifaria MC40-6 6179306 YP_001812004.1 CDS BamMC406_5344 NC_010552.1 2565682 2566158 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bam:Bamb_4803 activator of HSP90 ATPase 1 family protein; activator of Hsp90 ATPase 1 family protein 2565682..2566158 Burkholderia ambifaria MC40-6 6179307 YP_001812005.1 CDS BamMC406_5345 NC_010552.1 2566185 2567309 R PFAM: amidohydrolase 2; KEGG: bam:Bamb_4804 amidohydrolase 2; amidohydrolase 2 complement(2566185..2567309) Burkholderia ambifaria MC40-6 6180805 YP_001812006.1 CDS BamMC406_5346 NC_010552.1 2567311 2568618 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4805 major facilitator superfamily MFS_1; major facilitator transporter complement(2567311..2568618) Burkholderia ambifaria MC40-6 6180806 YP_001812007.1 CDS BamMC406_5347 NC_010552.1 2568704 2570017 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_4806 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(2568704..2570017) Burkholderia ambifaria MC40-6 6180807 YP_001812008.1 CDS BamMC406_5348 NC_010552.1 2570014 2571015 R PFAM: pyruvate carboxyltransferase; KEGG: bam:Bamb_4807 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(2570014..2571015) Burkholderia ambifaria MC40-6 6181096 YP_001812009.1 CDS BamMC406_5349 NC_010552.1 2571190 2572011 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_4808 transcriptional regulator, IclR family; IclR family transcriptional regulator 2571190..2572011 Burkholderia ambifaria MC40-6 6181097 YP_001812010.1 CDS BamMC406_5350 NC_010552.1 2572153 2572791 D PFAM: DSBA oxidoreductase; KEGG: bam:Bamb_4809 DsbA oxidoreductase; DSBA oxidoreductase 2572153..2572791 Burkholderia ambifaria MC40-6 6181098 YP_001812011.1 CDS BamMC406_5351 NC_010552.1 2572810 2573793 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4810 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2572810..2573793) Burkholderia ambifaria MC40-6 6180559 YP_001812012.1 CDS BamMC406_5352 NC_010552.1 2573894 2575126 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4811 major facilitator superfamily MFS_1; major facilitator transporter 2573894..2575126 Burkholderia ambifaria MC40-6 6180560 YP_001812013.1 CDS BamMC406_5353 NC_010552.1 2575552 2576247 D PFAM: phosphoesterase PA-phosphatase related; KEGG: bam:Bamb_4812 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 2575552..2576247 Burkholderia ambifaria MC40-6 6180561 YP_001812014.1 CDS BamMC406_5354 NC_010552.1 2576384 2577043 R PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_4813 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(2576384..2577043) Burkholderia ambifaria MC40-6 6179207 YP_001812015.1 CDS BamMC406_5355 NC_010552.1 2577170 2578240 R PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: bam:Bamb_4814 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(2577170..2578240) Burkholderia ambifaria MC40-6 6179208 YP_001812016.1 CDS BamMC406_5356 NC_010552.1 2578524 2578754 R hypothetical protein complement(2578524..2578754) Burkholderia ambifaria MC40-6 6179209 YP_001812017.1 CDS BamMC406_5357 NC_010552.1 2579373 2580221 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bch:Bcen2424_5787 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2579373..2580221) Burkholderia ambifaria MC40-6 6180230 YP_001812018.1 CDS BamMC406_5358 NC_010552.1 2580318 2582060 R PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: bam:Bamb_5444 polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein complement(2580318..2582060) Burkholderia ambifaria MC40-6 6180231 YP_001812019.1 CDS BamMC406_5359 NC_010552.1 2582257 2584293 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bxe:Bxe_B0152 filamentous haemagglutinin; filamentous hemagglutinin outer membrane protein complement(2582257..2584293) Burkholderia ambifaria MC40-6 6180232 YP_001812020.1 CDS BamMC406_5360 NC_010552.1 2584394 2584783 R hypothetical protein complement(2584394..2584783) Burkholderia ambifaria MC40-6 6179317 YP_001812021.1 CDS BamMC406_5361 NC_010552.1 2584800 2593343 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bam:Bamb_5446 adhesin HecA family; filamentous hemagglutinin outer membrane protein complement(2584800..2593343) Burkholderia ambifaria MC40-6 6179318 YP_001812022.1 CDS BamMC406_5362 NC_010552.1 2593680 2594585 D specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2593680..2594585 Burkholderia ambifaria MC40-6 6179319 YP_001812023.1 CDS BamMC406_5363 NC_010552.1 2594745 2594957 D KEGG: bam:Bamb_4816 hypothetical protein; hypothetical protein 2594745..2594957 Burkholderia ambifaria MC40-6 6181171 YP_001812024.1 CDS BamMC406_5364 NC_010552.1 2595055 2596068 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bam:Bamb_4817 threonine aldolase; threonine aldolase complement(2595055..2596068) Burkholderia ambifaria MC40-6 6181172 YP_001812025.1 CDS BamMC406_5365 NC_010552.1 2596454 2597875 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bam:Bamb_4818 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 2596454..2597875 Burkholderia ambifaria MC40-6 6181173 YP_001812026.1 CDS BamMC406_5366 NC_010552.1 2597905 2598912 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: bam:Bamb_4819 cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 2597905..2598912 Burkholderia ambifaria MC40-6 6180820 YP_001812027.1 CDS BamMC406_5367 NC_010552.1 2598884 2599063 D KEGG: bam:Bamb_4820 hypothetical protein; hypothetical protein 2598884..2599063 Burkholderia ambifaria MC40-6 6180821 YP_001812028.1 CDS BamMC406_5368 NC_010552.1 2599136 2599330 R KEGG: bam:Bamb_4822 hypothetical protein; hypothetical protein complement(2599136..2599330) Burkholderia ambifaria MC40-6 6180822 YP_001812029.1 CDS BamMC406_5369 NC_010552.1 2599699 2601375 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bam:Bamb_4823 type I phosphodiesterase/nucleotide pyrophosphatase; type I phosphodiesterase/nucleotide pyrophosphatase complement(2599699..2601375) Burkholderia ambifaria MC40-6 6180503 YP_001812030.1 CDS BamMC406_5370 NC_010552.1 2601638 2601859 D KEGG: bam:Bamb_4824 hypothetical protein; hypothetical protein 2601638..2601859 Burkholderia ambifaria MC40-6 6180504 YP_001812031.1 CDS BamMC406_5371 NC_010552.1 2601925 2605740 R PFAM: protein of unknown function DUF748; KEGG: bam:Bamb_4825 protein of unknown function DUF748; hypothetical protein complement(2601925..2605740) Burkholderia ambifaria MC40-6 6180505 YP_001812032.1 CDS BamMC406_5372 NC_010552.1 2605891 2607330 R PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: bam:Bamb_4826 protein of unknown function DUF1214; hypothetical protein complement(2605891..2607330) Burkholderia ambifaria MC40-6 6181016 YP_001812033.1 CDS BamMC406_5373 NC_010552.1 2607723 2610536 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bam:Bamb_4827 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2607723..2610536 Burkholderia ambifaria MC40-6 6181017 YP_001812034.1 CDS BamMC406_5374 NC_010552.1 2610591 2610827 R KEGG: bam:Bamb_4828 hypothetical protein; hypothetical protein complement(2610591..2610827) Burkholderia ambifaria MC40-6 6181018 YP_001812035.1 CDS BamMC406_5375 NC_010552.1 2611540 2612019 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4829 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(2611540..2612019) Burkholderia ambifaria MC40-6 6179320 YP_001812036.1 CDS BamMC406_5376 NC_010552.1 2612171 2612326 R KEGG: bam:Bamb_4830 hypothetical protein; hypothetical protein complement(2612171..2612326) Burkholderia ambifaria MC40-6 6179321 YP_001812037.1 CDS BamMC406_5377 NC_010552.1 2612488 2613951 R KEGG: bam:Bamb_4831 hypothetical protein; hypothetical protein complement(2612488..2613951) Burkholderia ambifaria MC40-6 6179322 YP_001812038.1 CDS BamMC406_5378 NC_010552.1 2614055 2614753 R PFAM: MgtC/SapB transporter; KEGG: bam:Bamb_4832 MgtC/SapB transporter; MgtC/SapB transporter complement(2614055..2614753) Burkholderia ambifaria MC40-6 6180047 YP_001812039.1 CDS BamMC406_5379 NC_010552.1 2614865 2615974 D PFAM: N-acylglucosamine 2-epimerase; KEGG: bam:Bamb_4833 N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 2614865..2615974 Burkholderia ambifaria MC40-6 6180048 YP_001812040.1 CDS BamMC406_5380 NC_010552.1 2615947 2617581 R PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_4834 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2615947..2617581) Burkholderia ambifaria MC40-6 6180049 YP_001812041.1 CDS BamMC406_5381 NC_010552.1 2617842 2618285 D PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_4835 hypothetical protein; thioesterase superfamily protein 2617842..2618285 Burkholderia ambifaria MC40-6 6179192 YP_001812042.1 CDS BamMC406_5382 NC_010552.1 2618408 2618689 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: bam:Bamb_4836 addiction module toxin, RelE/StbE family; addiction module antitoxin complement(2618408..2618689) Burkholderia ambifaria MC40-6 6179193 YP_001812043.1 CDS BamMC406_5383 NC_010552.1 2618679 2618927 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: bam:Bamb_4837 prevent-host-death family protein; prevent-host-death family protein complement(2618679..2618927) Burkholderia ambifaria MC40-6 6179194 YP_001812044.1 CDS BamMC406_5384 NC_010552.1 2619070 2620122 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_4838 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(2619070..2620122) Burkholderia ambifaria MC40-6 6181174 YP_001812045.1 CDS BamMC406_5385 NC_010552.1 2620337 2621071 D KEGG: vch:VCA0413 hypothetical protein; hypothetical protein 2620337..2621071 Burkholderia ambifaria MC40-6 6181175 YP_001812046.1 CDS BamMC406_5386 NC_010552.1 2621103 2622293 R TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: bam:Bamb_4839 putative AcnD-accessory protein PrpF; AcnD-accessory protein PrpF complement(2621103..2622293) Burkholderia ambifaria MC40-6 6181176 YP_001812047.1 CDS BamMC406_5387 NC_010552.1 2622320 2624917 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(2622320..2624917) Burkholderia ambifaria MC40-6 6181216 YP_001812048.1 CDS BamMC406_5388 NC_010552.1 2624994 2626166 R catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase complement(2624994..2626166) Burkholderia ambifaria MC40-6 6181217 YP_001812049.1 CDS prpB NC_010552.1 2626289 2627182 R catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase complement(2626289..2627182) Burkholderia ambifaria MC40-6 6181218 YP_001812050.1 CDS BamMC406_5390 NC_010552.1 2627353 2629335 D KEGG: bam:Bamb_4843 sigma54 specific transcriptional regulator, fis family; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase; Fis family proprionate catabolism activator 2627353..2629335 Burkholderia ambifaria MC40-6 6181536 YP_001812051.1 CDS BamMC406_5391 NC_010552.1 2629467 2630129 R PFAM: protein of unknown function DUF1470; KEGG: bam:Bamb_4844 protein of unknown function DUF1470; hypothetical protein complement(2629467..2630129) Burkholderia ambifaria MC40-6 6181537 YP_001812052.1 CDS BamMC406_5392 NC_010552.1 2630229 2630612 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_4845 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2630229..2630612 Burkholderia ambifaria MC40-6 6181538 YP_001812053.1 CDS BamMC406_5393 NC_010552.1 2630806 2631654 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bam:Bamb_4846 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase complement(2630806..2631654) Burkholderia ambifaria MC40-6 6180409 YP_001812054.1 CDS BamMC406_5394 NC_010552.1 2632314 2633138 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bam:Bamb_4847 transcriptional regulator, IclR family; IclR family transcriptional regulator 2632314..2633138 Burkholderia ambifaria MC40-6 6180410 YP_001812055.1 CDS BamMC406_5395 NC_010552.1 2633227 2633778 D KEGG: bam:Bamb_4848 hypothetical protein; hypothetical protein 2633227..2633778 Burkholderia ambifaria MC40-6 6180411 YP_001812056.1 CDS BamMC406_5396 NC_010552.1 2634459 2636816 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: bam:Bamb_4849 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(2634459..2636816) Burkholderia ambifaria MC40-6 6180188 YP_001812057.1 CDS BamMC406_5397 NC_010552.1 2637389 2637685 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bam:Bamb_4850 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(2637389..2637685) Burkholderia ambifaria MC40-6 6180189 YP_001812058.1 CDS BamMC406_5398 NC_010552.1 2637789 2638073 R KEGG: bam:Bamb_4851 hypothetical protein; hypothetical protein complement(2637789..2638073) Burkholderia ambifaria MC40-6 6180190 YP_001812059.1 CDS BamMC406_5399 NC_010552.1 2638135 2638662 R KEGG: bam:Bamb_4852 hypothetical protein; hypothetical protein complement(2638135..2638662) Burkholderia ambifaria MC40-6 6180177 YP_001812060.1 CDS BamMC406_5400 NC_010552.1 2638684 2640216 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_4853 sigma54 specific transcriptional regulator, fis family; putative sigma54 specific transcriptional regulator complement(2638684..2640216) Burkholderia ambifaria MC40-6 6180178 YP_001812061.1 CDS BamMC406_5401 NC_010552.1 2640543 2641946 D PFAM: Citrate transporter; KEGG: bam:Bamb_4854 citrate transporter; citrate transporter 2640543..2641946 Burkholderia ambifaria MC40-6 6180179 YP_001812062.1 CDS BamMC406_5402 NC_010552.1 2642232 2642483 D KEGG: bam:Bamb_4855 hypothetical protein; hypothetical protein 2642232..2642483 Burkholderia ambifaria MC40-6 6179752 YP_001812063.1 CDS BamMC406_5403 NC_010552.1 2642532 2644136 R PFAM: Thioredoxin domain; KEGG: bam:Bamb_4856 thioredoxin domain; thioredoxin domain-containing protein complement(2642532..2644136) Burkholderia ambifaria MC40-6 6179753 YP_001812064.1 CDS BamMC406_5404 NC_010552.1 2644488 2644988 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4857 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(2644488..2644988) Burkholderia ambifaria MC40-6 6179754 YP_001812065.1 CDS BamMC406_5405 NC_010552.1 2645522 2647837 D KEGG: bam:Bamb_4858 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; phosphocholine-specific phospholipase C 2645522..2647837 Burkholderia ambifaria MC40-6 6180384 YP_001812066.1 CDS BamMC406_5406 NC_010552.1 2648076 2648345 D KEGG: bam:Bamb_4859 hypothetical protein; hypothetical protein 2648076..2648345 Burkholderia ambifaria MC40-6 6180385 YP_001812067.1 CDS BamMC406_5407 NC_010552.1 2648509 2649501 D SMART: Rhodanese domain protein; KEGG: bam:Bamb_4860 rhodanese domain protein; rhodanese domain-containing protein 2648509..2649501 Burkholderia ambifaria MC40-6 6180386 YP_001812068.1 CDS BamMC406_5408 NC_010552.1 2649569 2651041 R PFAM: outer membrane porin; KEGG: bam:Bamb_4861 outer membrane porin; outer membrane porin complement(2649569..2651041) Burkholderia ambifaria MC40-6 6180026 YP_001812069.1 CDS BamMC406_5409 NC_010552.1 2651202 2652224 R KEGG: bam:Bamb_4862 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase subunit complement(2651202..2652224) Burkholderia ambifaria MC40-6 6180027 YP_001812070.1 CDS BamMC406_5410 NC_010552.1 2652221 2653213 R KEGG: bam:Bamb_4863 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase subunit complement(2652221..2653213) Burkholderia ambifaria MC40-6 6180028 YP_001812071.1 CDS BamMC406_5411 NC_010552.1 2653215 2654117 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4864 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2653215..2654117) Burkholderia ambifaria MC40-6 6180904 YP_001812072.1 CDS BamMC406_5412 NC_010552.1 2654131 2655069 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4865 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2654131..2655069) Burkholderia ambifaria MC40-6 6180905 YP_001812073.1 CDS BamMC406_5413 NC_010552.1 2655081 2656694 R PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_4866 extracellular solute-binding protein, family 5; 4-phytase complement(2655081..2656694) Burkholderia ambifaria MC40-6 6180906 YP_001812074.1 CDS BamMC406_5414 NC_010552.1 2656872 2657450 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_4867 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator complement(2656872..2657450) Burkholderia ambifaria MC40-6 6180901 YP_001812075.1 CDS BamMC406_5415 NC_010552.1 2657952 2659472 D KEGG: bam:Bamb_4868 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter 2657952..2659472 Burkholderia ambifaria MC40-6 6180902 YP_001812076.1 CDS BamMC406_5416 NC_010552.1 2659593 2659799 D KEGG: bam:Bamb_4869 hypothetical protein; hypothetical protein 2659593..2659799 Burkholderia ambifaria MC40-6 6180903 YP_001812077.1 CDS BamMC406_5417 NC_010552.1 2659852 2660979 R KEGG: bam:Bamb_4870 hypothetical protein; hypothetical protein complement(2659852..2660979) Burkholderia ambifaria MC40-6 6179471 YP_001812078.1 CDS BamMC406_5418 NC_010552.1 2661388 2662287 R TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: bam:Bamb_4871 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein complement(2661388..2662287) Burkholderia ambifaria MC40-6 6179472 YP_001812079.1 CDS BamMC406_5419 NC_010552.1 2662300 2662596 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(2662300..2662596) Burkholderia ambifaria MC40-6 6179473 YP_001812080.1 CDS BamMC406_5420 NC_010552.1 2662807 2663814 D TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: bam:Bamb_4873 NAD-dependent epimerase/dehydratase; hopanoid-associated sugar epimerase 2662807..2663814 Burkholderia ambifaria MC40-6 6179514 YP_001812081.1 CDS BamMC406_5421 NC_010552.1 2663923 2665320 D KEGG: bam:Bamb_4874 hypothetical protein; hypothetical protein 2663923..2665320 Burkholderia ambifaria MC40-6 6179515 YP_001812082.1 CDS BamMC406_5422 NC_010552.1 2665429 2666616 R TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_4875 glycosyl transferase, family 2; hopene-associated glycosyltransferase HpnB complement(2665429..2666616) Burkholderia ambifaria MC40-6 6179516 YP_001812083.1 CDS ispH NC_010552.1 2667049 2667990 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2667049..2667990 Burkholderia ambifaria MC40-6 6180159 YP_001812084.1 CDS BamMC406_5424 NC_010552.1 2668003 2669163 D TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: bam:Bamb_4877 radical SAM domain protein; hopanoid biosynthesis associated radical SAM protein HpnH 2668003..2669163 Burkholderia ambifaria MC40-6 6180160 YP_001812085.1 CDS BamMC406_5425 NC_010552.1 2669319 2669579 R KEGG: bam:Bamb_4878 hypothetical protein; hypothetical protein complement(2669319..2669579) Burkholderia ambifaria MC40-6 6180161 YP_001812086.1 CDS BamMC406_5426 NC_010552.1 2669761 2670240 R KEGG: bam:Bamb_4879 hypothetical protein; hypothetical protein complement(2669761..2670240) Burkholderia ambifaria MC40-6 6179652 YP_001812087.1 CDS BamMC406_5427 NC_010552.1 2670237 2670449 R hypothetical protein complement(2670237..2670449) Burkholderia ambifaria MC40-6 6179653 YP_001812088.1 CDS BamMC406_5428 NC_010552.1 2670464 2670838 R KEGG: bam:Bamb_4880 hypothetical protein; hypothetical protein complement(2670464..2670838) Burkholderia ambifaria MC40-6 6179654 YP_001812089.1 CDS BamMC406_5429 NC_010552.1 2671331 2671684 D PFAM: Dopa 45-dioxygenase; KEGG: bam:Bamb_4881 aromatic ring-cleaving dioxygenase-like protein; DOPA 45-dioxygenase 2671331..2671684 Burkholderia ambifaria MC40-6 6179157 YP_001812090.1 CDS BamMC406_5430 NC_010552.1 2671793 2672224 D KEGG: bam:Bamb_4882 hypothetical protein; hypothetical protein 2671793..2672224 Burkholderia ambifaria MC40-6 6179158 YP_001812091.1 CDS BamMC406_5431 NC_010552.1 2672258 2672878 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: bam:Bamb_4883 channel protein, hemolysin III family; hemolysin III family channel protein complement(2672258..2672878) Burkholderia ambifaria MC40-6 6179159 YP_001812092.1 CDS BamMC406_5432 NC_010552.1 2672948 2673133 D hypothetical protein 2672948..2673133 Burkholderia ambifaria MC40-6 6180601 YP_001812093.1 CDS BamMC406_5433 NC_010552.1 2673091 2673297 R PFAM: protein of unknown function DUF466; KEGG: bcn:Bcen_5299 protein of unknown function DUF466; hypothetical protein complement(2673091..2673297) Burkholderia ambifaria MC40-6 6180602 YP_001812094.1 CDS BamMC406_5434 NC_010552.1 2673310 2675388 R PFAM: carbon starvation protein CstA; KEGG: bam:Bamb_4884 carbon starvation protein CstA; carbon starvation protein CstA complement(2673310..2675388) Burkholderia ambifaria MC40-6 6180603 YP_001812095.1 CDS BamMC406_5435 NC_010552.1 2675668 2676096 R PFAM: PRC-barrel domain protein; KEGG: bam:Bamb_4885 PRC-barrel domain protein; PRC-barrel domain-containing protein complement(2675668..2676096) Burkholderia ambifaria MC40-6 6180459 YP_001812096.1 CDS BamMC406_5436 NC_010552.1 2676505 2677635 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2676505..2677635) Burkholderia ambifaria MC40-6 6180460 YP_001812097.1 CDS BamMC406_5437 NC_010552.1 2677898 2678452 D KEGG: bam:Bamb_4887 hypothetical protein; hypothetical protein 2677898..2678452 Burkholderia ambifaria MC40-6 6180461 YP_001812098.1 CDS BamMC406_5438 NC_010552.1 2678481 2678903 D KEGG: bam:Bamb_4888 hypothetical protein; hypothetical protein 2678481..2678903 Burkholderia ambifaria MC40-6 6179912 YP_001812099.1 CDS BamMC406_5439 NC_010552.1 2678988 2679698 R PFAM: protein of unknown function DUF480; KEGG: bam:Bamb_4889 protein of unknown function DUF480; hypothetical protein complement(2678988..2679698) Burkholderia ambifaria MC40-6 6179913 YP_001812100.1 CDS BamMC406_5440 NC_010552.1 2680130 2680894 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_4890 short chain dehydrogenase; short chain dehydrogenase 2680130..2680894 Burkholderia ambifaria MC40-6 6179914 YP_001812101.1 CDS BamMC406_5441 NC_010552.1 2680913 2681617 R PFAM: MOSC domain containing protein; KEGG: bam:Bamb_4891 MOSC domain containing protein; MOSC domain-containing protein complement(2680913..2681617) Burkholderia ambifaria MC40-6 6181027 YP_001812102.1 CDS BamMC406_5442 NC_010552.1 2681614 2682510 R PFAM: dihydrodipicolinate synthetase; KEGG: bam:Bamb_4892 dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(2681614..2682510) Burkholderia ambifaria MC40-6 6181028 YP_001812103.1 CDS BamMC406_5443 NC_010552.1 2682561 2683343 R PFAM: class II aldolase/adducin family protein; KEGG: bam:Bamb_4893 hypothetical protein; class II aldolase/adducin domain-containing protein complement(2682561..2683343) Burkholderia ambifaria MC40-6 6181029 YP_001812104.1 CDS BamMC406_5444 NC_010552.1 2683478 2684020 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_4894 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator 2683478..2684020 Burkholderia ambifaria MC40-6 6180862 YP_001812105.1 CDS BamMC406_5445 NC_010552.1 2684052 2684789 D TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bam:Bamb_4895 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor 2684052..2684789 Burkholderia ambifaria MC40-6 6180863 YP_001812106.1 CDS BamMC406_5446 NC_010552.1 2684881 2685729 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: bam:Bamb_4896 phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase complement(2684881..2685729) Burkholderia ambifaria MC40-6 6180864 YP_001812107.1 CDS BamMC406_5447 NC_010552.1 2685787 2686590 R PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_4897 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(2685787..2686590) Burkholderia ambifaria MC40-6 6181362 YP_001812108.1 CDS BamMC406_5448 NC_010552.1 2687120 2687986 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4898 transcriptional regulator, LysR family; LysR family transcriptional regulator 2687120..2687986 Burkholderia ambifaria MC40-6 6181363 YP_001812109.1 CDS BamMC406_5449 NC_010552.1 2688053 2688541 R PFAM: protein of unknown function DUF1486; KEGG: bam:Bamb_4899 protein of unknown function DUF1486; hypothetical protein complement(2688053..2688541) Burkholderia ambifaria MC40-6 6181364 YP_001812110.1 CDS BamMC406_5450 NC_010552.1 2688607 2689791 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(2688607..2689791) Burkholderia ambifaria MC40-6 6179146 YP_001812111.1 CDS BamMC406_5451 NC_010552.1 2690319 2690939 D PFAM: 17 kDa surface antigen; KEGG: bam:Bamb_4902 17 kDa surface antigen; 17 kDa surface antigen 2690319..2690939 Burkholderia ambifaria MC40-6 6179147 YP_001812112.1 CDS BamMC406_5452 NC_010552.1 2691202 2691708 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4903 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2691202..2691708 Burkholderia ambifaria MC40-6 6179148 YP_001812113.1 CDS BamMC406_5453 NC_010552.1 2691761 2693755 R PFAM: glycoside hydrolase family 28; KEGG: bam:Bamb_4904 glycoside hydrolase, family 28; glycoside hydrolase family protein complement(2691761..2693755) Burkholderia ambifaria MC40-6 6180919 YP_001812114.1 CDS BamMC406_5454 NC_010552.1 2694083 2695441 D PFAM: aminotransferase class-III; KEGG: bam:Bamb_4906 aminotransferase; aminotransferase 2694083..2695441 Burkholderia ambifaria MC40-6 6180920 YP_001812115.1 CDS BamMC406_5455 NC_010552.1 2695621 2696805 R KEGG: bam:Bamb_4907 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(2695621..2696805) Burkholderia ambifaria MC40-6 6180921 YP_001812116.1 CDS BamMC406_5456 NC_010552.1 2696844 2698088 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(2696844..2698088) Burkholderia ambifaria MC40-6 6181500 YP_001812117.1 CDS BamMC406_5457 NC_010552.1 2698270 2698746 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_4909 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2698270..2698746 Burkholderia ambifaria MC40-6 6181501 YP_001812118.1 CDS BamMC406_5458 NC_010552.1 2698749 2699366 R KEGG: bam:Bamb_4910 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2698749..2699366) Burkholderia ambifaria MC40-6 6181502 YP_001812119.1 CDS BamMC406_5459 NC_010552.1 2699597 2701318 R PFAM: Tannase and feruloyl esterase; KEGG: bam:Bamb_4911 feruloyl esterase; feruloyl esterase complement(2699597..2701318) Burkholderia ambifaria MC40-6 6180581 YP_001812120.1 CDS BamMC406_5460 NC_010552.1 2701347 2702495 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_4912 porin, gram-negative type; porin complement(2701347..2702495) Burkholderia ambifaria MC40-6 6180582 YP_001812121.1 CDS BamMC406_5461 NC_010552.1 2702559 2703764 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_4913 putative 3-hydroxyphenylpropionic transporter MhpT; putative 3-hydroxyphenylpropionic transporter MhpT complement(2702559..2703764) Burkholderia ambifaria MC40-6 6180583 YP_001812122.1 CDS BamMC406_5462 NC_010552.1 2703884 2704936 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_6181 transposase, IS605 OrfB family; IS605 family transposase OrfB 2703884..2704936 Burkholderia ambifaria MC40-6 6180530 YP_001812123.1 CDS BamMC406_5463 NC_010552.1 2705101 2706993 R catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase complement(2705101..2706993) Burkholderia ambifaria MC40-6 6180531 YP_001812124.1 CDS BamMC406_5464 NC_010552.1 2707005 2708453 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4915 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2707005..2708453) Burkholderia ambifaria MC40-6 6180532 YP_001812125.1 CDS BamMC406_5465 NC_010552.1 2708501 2709331 R catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase complement(2708501..2709331) Burkholderia ambifaria MC40-6 6180000 YP_001812126.1 CDS BamMC406_5466 NC_010552.1 2709555 2710058 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_4917 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2709555..2710058) Burkholderia ambifaria MC40-6 6180001 YP_001812127.1 CDS BamMC406_5467 NC_010552.1 2710156 2710272 R hypothetical protein complement(2710156..2710272) Burkholderia ambifaria MC40-6 6180002 YP_001812128.1 CDS BamMC406_5468 NC_010552.1 2710314 2710559 D KEGG: bam:Bamb_5365 GP29; GP29 2710314..2710559 Burkholderia ambifaria MC40-6 6180678 YP_001812129.1 CDS BamMC406_5469 NC_010552.1 2710560 2714414 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bam:Bamb_5366 rhs element Vgr protein; type VI secretion system Vgr family protein 2710560..2714414 Burkholderia ambifaria MC40-6 6180679 YP_001812130.1 CDS BamMC406_5470 NC_010552.1 2714416 2715270 D KEGG: bam:Bamb_5369 hypothetical protein; hypothetical protein 2714416..2715270 Burkholderia ambifaria MC40-6 6180680 YP_001812131.1 CDS BamMC406_5471 NC_010552.1 2715316 2715591 D KEGG: bam:Bamb_5368 hypothetical protein; hypothetical protein 2715316..2715591 Burkholderia ambifaria MC40-6 6181365 YP_001812132.1 CDS BamMC406_5472 NC_010552.1 2715593 2716447 D KEGG: bam:Bamb_5367 hypothetical protein; hypothetical protein 2715593..2716447 Burkholderia ambifaria MC40-6 6181366 YP_001812133.1 CDS BamMC406_5473 NC_010552.1 2716699 2717598 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bvi:Bcep1808_3839 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(2716699..2717598) Burkholderia ambifaria MC40-6 6181367 YP_001812134.1 CDS araH NC_010552.1 2717649 2718656 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter permease complement(2717649..2718656) Burkholderia ambifaria MC40-6 6180619 YP_001812135.1 CDS araG NC_010552.1 2718704 2720266 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter ATP-binding protein complement(2718704..2720266) Burkholderia ambifaria MC40-6 6180620 YP_001812136.1 CDS BamMC406_5476 NC_010552.1 2720287 2721291 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_4921 periplasmic binding protein/LacI transcriptional regulator; monosaccharide-transporting ATPase complement(2720287..2721291) Burkholderia ambifaria MC40-6 6180621 YP_001812137.1 CDS BamMC406_5477 NC_010552.1 2721373 2722302 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bam:Bamb_4922 galactose 1-dehydrogenase; galactose 1-dehydrogenase complement(2721373..2722302) Burkholderia ambifaria MC40-6 6181116 YP_001812138.1 CDS BamMC406_5478 NC_010552.1 2722327 2723256 R PFAM: dihydrodipicolinate synthetase; KEGG: bam:Bamb_4923 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(2722327..2723256) Burkholderia ambifaria MC40-6 6181117 YP_001812139.1 CDS BamMC406_5479 NC_010552.1 2723309 2724667 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4924 major facilitator superfamily MFS_1; major facilitator transporter complement(2723309..2724667) Burkholderia ambifaria MC40-6 6181118 YP_001812140.1 CDS BamMC406_5480 NC_010552.1 2724869 2726620 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(2724869..2726620) Burkholderia ambifaria MC40-6 6181488 YP_001812141.1 CDS BamMC406_5481 NC_010552.1 2726735 2727685 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4926 transcriptional regulator, LysR family; LysR family transcriptional regulator 2726735..2727685 Burkholderia ambifaria MC40-6 6181489 YP_001812142.1 CDS BamMC406_5482 NC_010552.1 2727688 2728164 R PFAM: OsmC family protein; KEGG: bam:Bamb_4927 OsmC family protein; OsmC family protein complement(2727688..2728164) Burkholderia ambifaria MC40-6 6181490 YP_001812143.1 CDS BamMC406_5483 NC_010552.1 2728573 2730678 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_4928 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2728573..2730678 Burkholderia ambifaria MC40-6 6180922 YP_001812144.1 CDS BamMC406_5484 NC_010552.1 2730803 2731840 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_4929 transcriptional regulator, LacI family; LacI family transcription regulator complement(2730803..2731840) Burkholderia ambifaria MC40-6 6180923 YP_001812145.1 CDS BamMC406_5485 NC_010552.1 2732031 2733179 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_4930 ABC transporter related; ABC transporter-like protein 2732031..2733179 Burkholderia ambifaria MC40-6 6180924 YP_001812146.1 CDS BamMC406_5486 NC_010552.1 2733188 2735179 D PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bam:Bamb_4931 beta-galactosidase; beta-galactosidase 2733188..2735179 Burkholderia ambifaria MC40-6 6180438 YP_001812147.1 CDS BamMC406_5487 NC_010552.1 2735247 2736506 D PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_4932 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2735247..2736506 Burkholderia ambifaria MC40-6 6180439 YP_001812148.1 CDS BamMC406_5488 NC_010552.1 2736569 2737528 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4933 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2736569..2737528 Burkholderia ambifaria MC40-6 6180440 YP_001812149.1 CDS BamMC406_5489 NC_010552.1 2737550 2738401 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_4934 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2737550..2738401 Burkholderia ambifaria MC40-6 6180044 YP_001812150.1 CDS BamMC406_5490 NC_010552.1 2738794 2739564 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_4937 DNA-binding transcriptional dual regulator, glycolate-binding; DNA-binding transcriptional regulator GlcC complement(2738794..2739564) Burkholderia ambifaria MC40-6 6180045 YP_001812151.1 CDS BamMC406_5491 NC_010552.1 2739788 2741287 D TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_4938 glycolate oxidase subunit GlcD; glycolate oxidase subunit GlcD 2739788..2741287 Burkholderia ambifaria MC40-6 6180046 YP_001812152.1 CDS glcE NC_010552.1 2741287 2742369 D PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_4939 glycolate oxidase FAD binding subunit; glycolate oxidase FAD binding subunit 2741287..2742369 Burkholderia ambifaria MC40-6 6181446 YP_001812153.1 CDS glcF NC_010552.1 2742394 2743614 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bam:Bamb_4940 glycolate oxidase iron-sulfur subunit; glycolate oxidase iron-sulfur subunit 2742394..2743614 Burkholderia ambifaria MC40-6 6181447 YP_001812154.1 CDS BamMC406_5494 NC_010552.1 2743637 2744041 D PFAM: protein of unknown function DUF336; KEGG: bam:Bamb_4941 protein of unknown function DUF336; hypothetical protein 2743637..2744041 Burkholderia ambifaria MC40-6 6181448 YP_001812155.1 CDS BamMC406_5495 NC_010552.1 2744078 2746252 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 2744078..2746252 Burkholderia ambifaria MC40-6 6179868 YP_001812156.1 CDS BamMC406_5496 NC_010552.1 2746739 2748301 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bam:Bamb_4944 diguanylate cyclase; diguanylate cyclase 2746739..2748301 Burkholderia ambifaria MC40-6 6179869 YP_001812157.1 CDS BamMC406_5497 NC_010552.1 2748429 2749808 D PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protein; KEGG: bam:Bamb_4945 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2748429..2749808 Burkholderia ambifaria MC40-6 6179870 YP_001812158.1 CDS BamMC406_5498 NC_010552.1 2749840 2750484 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: bam:Bamb_4946 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2749840..2750484 Burkholderia ambifaria MC40-6 6181343 YP_001812159.1 CDS BamMC406_5499 NC_010552.1 2750678 2751142 D KEGG: bte:BTH_I1830 hypothetical protein; hypothetical protein 2750678..2751142 Burkholderia ambifaria MC40-6 6181344 YP_001812160.1 CDS BamMC406_5500 NC_010552.1 2751514 2752164 R PFAM: toluene tolerance family protein; KEGG: bam:Bamb_4947 toluene tolerance family protein; toluene tolerance family protein complement(2751514..2752164) Burkholderia ambifaria MC40-6 6181345 YP_001812161.1 CDS BamMC406_5501 NC_010552.1 2752441 2755074 D TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: bam:Bamb_4948 efflux pump, RND superfamily; hopanoid biosynthesis associated RND transporter like protein HpnN 2752441..2755074 Burkholderia ambifaria MC40-6 6179457 YP_001812162.1 CDS BamMC406_5502 NC_010552.1 2755067 2756071 D PFAM: VacJ family lipoprotein; KEGG: bam:Bamb_4949 VacJ family lipoprotein; VacJ family lipoprotein 2755067..2756071 Burkholderia ambifaria MC40-6 6179458 YP_001812163.1 CDS BamMC406_5503 NC_010552.1 2756182 2756889 R KEGG: bam:Bamb_4950 hypothetical protein; hypothetical protein complement(2756182..2756889) Burkholderia ambifaria MC40-6 6181346 YP_001812164.1 CDS BamMC406_5504 NC_010552.1 2756893 2758866 R KEGG: bam:Bamb_4951 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene-hopene cyclase complement(2756893..2758866) Burkholderia ambifaria MC40-6 6181347 YP_001812165.1 CDS BamMC406_5505 NC_010552.1 2758882 2760135 R TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bam:Bamb_4952 amine oxidase; squalene-associated FAD-dependent desaturase complement(2758882..2760135) Burkholderia ambifaria MC40-6 6181348 YP_001812166.1 CDS BamMC406_5506 NC_010552.1 2760139 2760987 R TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bam:Bamb_4953 squalene/phytoene synthase; squalene synthase HpnD complement(2760139..2760987) Burkholderia ambifaria MC40-6 6179758 YP_001812167.1 CDS BamMC406_5507 NC_010552.1 2761248 2761580 R KEGG: bam:Bamb_4954 hypothetical protein; hypothetical protein complement(2761248..2761580) Burkholderia ambifaria MC40-6 6179759 YP_001812168.1 CDS BamMC406_5508 NC_010552.1 2761799 2762683 D KEGG: bam:Bamb_4955 esterase; esterase 2761799..2762683 Burkholderia ambifaria MC40-6 6179760 YP_001812169.1 CDS BamMC406_5509 NC_010552.1 2762728 2763708 R KEGG: bam:Bamb_4956 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(2762728..2763708) Burkholderia ambifaria MC40-6 6179392 YP_001812170.1 CDS BamMC406_5510 NC_010552.1 2763705 2764331 R PFAM: CheC domain protein; KEGG: bam:Bamb_4957 CheC, inhibitor of MCP methylation; CheC, inhibitor of MCP methylation complement(2763705..2764331) Burkholderia ambifaria MC40-6 6179393 YP_001812171.1 CDS BamMC406_5511 NC_010552.1 2764324 2764692 R PFAM: response regulator receiver; KEGG: bam:Bamb_4958 response regulator receiver protein; response regulator receiver protein complement(2764324..2764692) Burkholderia ambifaria MC40-6 6179394 YP_001812172.1 CDS BamMC406_5512 NC_010552.1 2765160 2767400 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_4959 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 2765160..2767400 Burkholderia ambifaria MC40-6 6179128 YP_001812173.1 CDS BamMC406_5513 NC_010552.1 2767446 2768000 R PFAM: NADPH-dependent FMN reductase; KEGG: bam:Bamb_4960 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(2767446..2768000) Burkholderia ambifaria MC40-6 6179129 YP_001812174.1 CDS BamMC406_5514 NC_010552.1 2768367 2768963 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2768367..2768963 Burkholderia ambifaria MC40-6 6179130 YP_001812175.1 CDS BamMC406_5515 NC_010552.1 2768944 2769183 D KEGG: bam:Bamb_4962 hypothetical protein; hypothetical protein 2768944..2769183 Burkholderia ambifaria MC40-6 6179184 YP_001812176.1 CDS BamMC406_6502 NC_010553.1 4 1872 R KEGG: bmu:Bmul_5613 hypothetical protein; hypothetical protein complement(4..1872) Burkholderia ambifaria MC40-6 6181836 YP_001812177.1 CDS BamMC406_6503 NC_010553.1 1869 3227 R KEGG: bmu:Bmul_5612 hypothetical protein; hypothetical protein complement(1869..3227) Burkholderia ambifaria MC40-6 6181539 YP_001812178.1 CDS BamMC406_6504 NC_010553.1 3224 4237 R KEGG: bvi:Bcep1808_7116 hypothetical protein; hypothetical protein complement(3224..4237) Burkholderia ambifaria MC40-6 6181540 YP_001812179.1 CDS BamMC406_6505 NC_010553.1 4245 4979 R KEGG: bmu:Bmul_5610 hypothetical protein; hypothetical protein complement(4245..4979) Burkholderia ambifaria MC40-6 6181541 YP_001812180.1 CDS BamMC406_6506 NC_010553.1 4991 7468 R KEGG: bvi:Bcep1808_7114 type IV secretory pathway VirB4 components-like protein; type IV secretory pathway VirB4 components-like protein complement(4991..7468) Burkholderia ambifaria MC40-6 6181542 YP_001812181.1 CDS BamMC406_6507 NC_010553.1 7462 7773 R KEGG: bmu:Bmul_5608 hypothetical protein; hypothetical protein complement(7462..7773) Burkholderia ambifaria MC40-6 6181543 YP_001812182.1 CDS BamMC406_6508 NC_010553.1 7766 8146 R KEGG: bvi:Bcep1808_7112 hypothetical protein; hypothetical protein complement(7766..8146) Burkholderia ambifaria MC40-6 6181544 YP_001812183.1 CDS BamMC406_6509 NC_010553.1 8163 9293 R PFAM: type II secretion system protein E; KEGG: bmu:Bmul_5606 type II secretion system protein E; type II secretion system protein E complement(8163..9293) Burkholderia ambifaria MC40-6 6181545 YP_001812184.1 CDS BamMC406_6510 NC_010553.1 9570 10775 R KEGG: bmu:Bmul_5605 hypothetical protein; hypothetical protein complement(9570..10775) Burkholderia ambifaria MC40-6 6181546 YP_001812185.1 CDS BamMC406_6511 NC_010553.1 10783 11709 R KEGG: bvi:Bcep1808_7109 hypothetical protein; hypothetical protein complement(10783..11709) Burkholderia ambifaria MC40-6 6181547 YP_001812186.1 CDS BamMC406_6512 NC_010553.1 11804 12832 R PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bmu:Bmul_5603 ATPase; ATPase complement(11804..12832) Burkholderia ambifaria MC40-6 6181548 YP_001812187.1 CDS BamMC406_6513 NC_010553.1 12951 13202 R KEGG: bmu:Bmul_5602 hypothetical protein; hypothetical protein complement(12951..13202) Burkholderia ambifaria MC40-6 6181549 YP_001812188.1 CDS BamMC406_6514 NC_010553.1 13459 13923 R KEGG: bvi:Bcep1808_7106 hypothetical protein; hypothetical protein complement(13459..13923) Burkholderia ambifaria MC40-6 6181550 YP_001812189.1 CDS BamMC406_6515 NC_010553.1 13938 15458 R KEGG: bvi:Bcep1808_7105 hypothetical protein; hypothetical protein complement(13938..15458) Burkholderia ambifaria MC40-6 6181551 YP_001812190.1 CDS BamMC406_6516 NC_010553.1 15538 15948 R KEGG: bvi:Bcep1808_7104 hypothetical protein; hypothetical protein complement(15538..15948) Burkholderia ambifaria MC40-6 6181552 YP_001812191.1 CDS BamMC406_6517 NC_010553.1 16036 16161 R hypothetical protein complement(16036..16161) Burkholderia ambifaria MC40-6 6181553 YP_001812192.1 CDS BamMC406_6518 NC_010553.1 16164 16637 R KEGG: bmu:Bmul_5598 hypothetical protein; hypothetical protein complement(16164..16637) Burkholderia ambifaria MC40-6 6181554 YP_001812193.1 CDS BamMC406_6519 NC_010553.1 16646 17038 R KEGG: bvi:Bcep1808_7102 hypothetical protein; hypothetical protein complement(16646..17038) Burkholderia ambifaria MC40-6 6181765 YP_001812194.1 CDS BamMC406_6520 NC_010553.1 17125 17586 R KEGG: bvi:Bcep1808_7101 putative outer membrane lipoprotein transmembrane; putative outer membrane lipoprotein transmembrane complement(17125..17586) Burkholderia ambifaria MC40-6 6181766 YP_001812195.1 CDS BamMC406_6521 NC_010553.1 17729 18016 R hypothetical protein complement(17729..18016) Burkholderia ambifaria MC40-6 6181767 YP_001812196.1 CDS BamMC406_6522 NC_010553.1 18275 18547 R hypothetical protein complement(18275..18547) Burkholderia ambifaria MC40-6 6181768 YP_001812197.1 CDS BamMC406_6523 NC_010553.1 18634 19452 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bvi:Bcep1808_7099 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein complement(18634..19452) Burkholderia ambifaria MC40-6 6181769 YP_001812198.1 CDS BamMC406_6524 NC_010553.1 19452 20087 R KEGG: bvi:Bcep1808_7098 hypothetical protein; hypothetical protein complement(19452..20087) Burkholderia ambifaria MC40-6 6181770 YP_001812199.1 CDS BamMC406_6525 NC_010553.1 20084 20812 R KEGG: bvi:Bcep1808_7097 hypothetical protein; hypothetical protein complement(20084..20812) Burkholderia ambifaria MC40-6 6181771 YP_001812200.1 CDS BamMC406_6526 NC_010553.1 20824 21966 R KEGG: bvi:Bcep1808_7096 hypothetical protein; hypothetical protein complement(20824..21966) Burkholderia ambifaria MC40-6 6181772 YP_001812201.1 CDS BamMC406_6527 NC_010553.1 22066 22284 R KEGG: bmu:Bmul_5591 hypothetical protein; hypothetical protein complement(22066..22284) Burkholderia ambifaria MC40-6 6181773 YP_001812202.1 CDS BamMC406_6528 NC_010553.1 22296 22745 R KEGG: bmu:Bmul_5590 hypothetical protein; hypothetical protein complement(22296..22745) Burkholderia ambifaria MC40-6 6181774 YP_001812203.1 CDS BamMC406_6529 NC_010553.1 22827 24494 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: bmu:Bmul_5589 ParB-like partition protein; parB-like partition protein complement(22827..24494) Burkholderia ambifaria MC40-6 6181775 YP_001812204.1 CDS BamMC406_6530 NC_010553.1 24724 25761 R KEGG: bvi:Bcep1808_7092 hypothetical protein; hypothetical protein complement(24724..25761) Burkholderia ambifaria MC40-6 6181776 YP_001812205.1 CDS BamMC406_6531 NC_010553.1 25798 25902 D hypothetical protein 25798..25902 Burkholderia ambifaria MC40-6 6181777 YP_001812206.1 CDS BamMC406_6532 NC_010553.1 26525 26647 D hypothetical protein 26525..26647 Burkholderia ambifaria MC40-6 6181778 YP_001812207.1 CDS BamMC406_6533 NC_010553.1 26669 27895 D KEGG: bvi:Bcep1808_7090 hypothetical protein; hypothetical protein 26669..27895 Burkholderia ambifaria MC40-6 6181779 YP_001812208.1 CDS BamMC406_6534 NC_010553.1 27990 28442 R KEGG: bvi:Bcep1808_5978 transcriptional regulator, fis family; hypothetical protein complement(27990..28442) Burkholderia ambifaria MC40-6 6181780 YP_001812209.1 CDS BamMC406_6535 NC_010553.1 28581 29024 D KEGG: bmu:Bmul_5584 hypothetical protein; hypothetical protein 28581..29024 Burkholderia ambifaria MC40-6 6181781 YP_001812210.1 CDS BamMC406_6536 NC_010553.1 29143 29814 D KEGG: bvi:Bcep1808_7089 hypothetical protein; hypothetical protein 29143..29814 Burkholderia ambifaria MC40-6 6181782 YP_001812211.1 CDS BamMC406_6537 NC_010553.1 30033 31175 R PFAM: helix-turn-helix Fis-type; KEGG: bmu:Bmul_5579 transcriptional regulator, fis family; Fis family transcriptional regulator complement(30033..31175) Burkholderia ambifaria MC40-6 6181747 YP_001812212.1 CDS BamMC406_6538 NC_010553.1 32337 33341 D KEGG: bmu:Bmul_5577 hypothetical protein; hypothetical protein 32337..33341 Burkholderia ambifaria MC40-6 6181748 YP_001812213.1 CDS BamMC406_6539 NC_010553.1 33351 33683 D KEGG: bvi:Bcep1808_7085 hypothetical protein; hypothetical protein 33351..33683 Burkholderia ambifaria MC40-6 6181749 YP_001812214.1 CDS BamMC406_6540 NC_010553.1 33805 33960 D KEGG: bmu:Bmul_5575 hypothetical protein; hypothetical protein 33805..33960 Burkholderia ambifaria MC40-6 6181750 YP_001812215.1 CDS BamMC406_6541 NC_010553.1 33957 34199 D hypothetical protein 33957..34199 Burkholderia ambifaria MC40-6 6181751 YP_001812216.1 CDS BamMC406_6542 NC_010553.1 34282 34503 R KEGG: bmu:Bmul_5574 hypothetical protein; hypothetical protein complement(34282..34503) Burkholderia ambifaria MC40-6 6181752 YP_001812217.1 CDS BamMC406_6543 NC_010553.1 34600 35745 R KEGG: bmu:Bmul_5573 hypothetical protein; hypothetical protein complement(34600..35745) Burkholderia ambifaria MC40-6 6181753 YP_001812218.1 CDS BamMC406_6544 NC_010553.1 36148 36714 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bvi:Bcep1808_7080 single-strand binding protein; single-strand binding protein complement(36148..36714) Burkholderia ambifaria MC40-6 6181754 YP_001812219.1 CDS BamMC406_6545 NC_010553.1 36726 37517 R KEGG: bmu:Bmul_5571 hypothetical protein; hypothetical protein complement(36726..37517) Burkholderia ambifaria MC40-6 6181755 YP_001812220.1 CDS BamMC406_6546 NC_010553.1 37505 37954 R KEGG: bvi:Bcep1808_7078 hypothetical protein; hypothetical protein complement(37505..37954) Burkholderia ambifaria MC40-6 6181756 YP_001812221.1 CDS BamMC406_6547 NC_010553.1 38074 38400 R KEGG: bvi:Bcep1808_7077 hypothetical protein; hypothetical protein complement(38074..38400) Burkholderia ambifaria MC40-6 6181757 YP_001812222.1 CDS BamMC406_6548 NC_010553.1 38828 39523 D PFAM: NERD domain protein; KEGG: bvi:Bcep1808_7075 NERD domain protein; NERD domain-containing protein 38828..39523 Burkholderia ambifaria MC40-6 6181758 YP_001812223.1 CDS BamMC406_6549 NC_010553.1 39753 40190 D KEGG: bmu:Bmul_5566 hypothetical protein; hypothetical protein 39753..40190 Burkholderia ambifaria MC40-6 6181759 YP_001812224.1 CDS BamMC406_6550 NC_010553.1 40195 41445 D KEGG: bvi:Bcep1808_7074 hypothetical protein; hypothetical protein 40195..41445 Burkholderia ambifaria MC40-6 6181760 YP_001812225.1 CDS BamMC406_6551 NC_010553.1 41497 42699 D KEGG: bmu:Bmul_5565 hypothetical protein; hypothetical protein 41497..42699 Burkholderia ambifaria MC40-6 6181761 YP_001812226.1 CDS BamMC406_6552 NC_010553.1 42686 42865 D KEGG: bmu:Bmul_5564 hypothetical protein; hypothetical protein 42686..42865 Burkholderia ambifaria MC40-6 6181762 YP_001812227.1 CDS BamMC406_6553 NC_010553.1 42878 43243 D KEGG: bmu:Bmul_5563 hypothetical protein; hypothetical protein 42878..43243 Burkholderia ambifaria MC40-6 6181763 YP_001812228.1 CDS BamMC406_6554 NC_010553.1 43416 43817 D hypothetical protein 43416..43817 Burkholderia ambifaria MC40-6 6181764 YP_001812229.1 CDS BamMC406_6555 NC_010553.1 44052 45065 D PFAM: SCP-like extracellular; KEGG: bmu:Bmul_5562 SCP-like extracellular; SCP-like extracellular 44052..45065 Burkholderia ambifaria MC40-6 6181609 YP_001812230.1 CDS BamMC406_6556 NC_010553.1 45191 46513 D PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_06951 hypothetical protein; transposase IS4 family protein 45191..46513 Burkholderia ambifaria MC40-6 6181610 YP_001812231.1 CDS BamMC406_6557 NC_010553.1 46544 47152 R KEGG: bmu:Bmul_5559 hypothetical protein; hypothetical protein complement(46544..47152) Burkholderia ambifaria MC40-6 6181611 YP_001812232.1 CDS BamMC406_6558 NC_010553.1 47166 48380 R KEGG: bmu:Bmul_5558 hypothetical protein; hypothetical protein complement(47166..48380) Burkholderia ambifaria MC40-6 6181612 YP_001812233.1 CDS BamMC406_6559 NC_010553.1 48390 48983 R KEGG: bvi:Bcep1808_7068 hypothetical protein; hypothetical protein complement(48390..48983) Burkholderia ambifaria MC40-6 6181613 YP_001812234.1 CDS BamMC406_6560 NC_010553.1 48992 50125 R KEGG: bvi:Bcep1808_7067 hypothetical protein; hypothetical protein complement(48992..50125) Burkholderia ambifaria MC40-6 6181614 YP_001812235.1 CDS BamMC406_6561 NC_010553.1 50122 52389 R PFAM: type II secretion system protein E; KEGG: bvi:Bcep1808_7066 type II secretion system protein E; type II secretion system protein E complement(50122..52389) Burkholderia ambifaria MC40-6 6181615 YP_001812236.1 CDS BamMC406_6562 NC_010553.1 52386 53003 R KEGG: bmu:Bmul_5554 hypothetical protein; hypothetical protein complement(52386..53003) Burkholderia ambifaria MC40-6 6181616 YP_001812237.1 CDS BamMC406_6563 NC_010553.1 52957 54288 R KEGG: bvi:Bcep1808_7064 hypothetical protein; hypothetical protein complement(52957..54288) Burkholderia ambifaria MC40-6 6181617 YP_001812238.1 CDS BamMC406_6564 NC_010553.1 54293 55903 R KEGG: bmu:Bmul_5552 type II secretory pathway component PulD-like protein; type II secretory pathway component PulD-like protein complement(54293..55903) Burkholderia ambifaria MC40-6 6181618 YP_001812239.1 CDS BamMC406_6565 NC_010553.1 55909 56439 R KEGG: bvi:Bcep1808_7062 hypothetical protein; hypothetical protein complement(55909..56439) Burkholderia ambifaria MC40-6 6181619 YP_001812240.1 CDS BamMC406_6566 NC_010553.1 56442 56864 R PFAM: Lytic transglycosylase catalytic; KEGG: bmu:Bmul_5550 lytic transglycosylase catalytic; lytic transglycosylase catalytic complement(56442..56864) Burkholderia ambifaria MC40-6 6181620 YP_001812241.1 CDS BamMC406_6567 NC_010553.1 56861 58147 R KEGG: bvi:Bcep1808_7060 hypothetical protein; hypothetical protein complement(56861..58147) Burkholderia ambifaria MC40-6 6181621 YP_001812242.1 CDS BamMC406_6568 NC_010553.1 58144 58953 R KEGG: bmu:Bmul_5548 lytic transglycosylase catalytic; lytic transglycosylase catalytic complement(58144..58953) Burkholderia ambifaria MC40-6 6181622 YP_001812243.1 CDS BamMC406_6569 NC_010553.1 58950 60209 R PFAM: conjugation TrbI family protein; KEGG: bmu:Bmul_5547 conjugation TrbI family protein; conjugation TrbI family protein complement(58950..60209) Burkholderia ambifaria MC40-6 6181623 YP_001812244.1 CDS BamMC406_6570 NC_010553.1 60219 61100 R PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bvi:Bcep1808_7057 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX complement(60219..61100) Burkholderia ambifaria MC40-6 6181624 YP_001812245.1 CDS BamMC406_6571 NC_010553.1 61097 61813 R KEGG: bvi:Bcep1808_7056 hypothetical protein; hypothetical protein complement(61097..61813) Burkholderia ambifaria MC40-6 6181625 YP_001812246.1 CDS BamMC406_6572 NC_010553.1 62097 62645 D KEGG: bvi:Bcep1808_7055 hypothetical protein; hypothetical protein 62097..62645 Burkholderia ambifaria MC40-6 6181626 YP_001812247.1 CDS BamMC406_6573 NC_010553.1 62866 63426 D KEGG: bvi:Bcep1808_7055 hypothetical protein; hypothetical protein 62866..63426 Burkholderia ambifaria MC40-6 6181573 YP_001812248.1 CDS BamMC406_6574 NC_010553.1 63494 64891 R KEGG: bxe:Bxe_C1368 hypothetical protein; hypothetical protein complement(63494..64891) Burkholderia ambifaria MC40-6 6181574 YP_001812249.1 CDS BamMC406_6575 NC_010553.1 65689 66897 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: reu:Reut_C6162 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 65689..66897 Burkholderia ambifaria MC40-6 6181575 YP_001812250.1 CDS BamMC406_6576 NC_010553.1 66894 67868 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: reu:Reut_C6163 helix-turn-helix, fis-type:ParB-like partition protein; parB-like partition protein 66894..67868 Burkholderia ambifaria MC40-6 6181576 YP_001812251.1 CDS BamMC406_6577 NC_010553.1 68348 70480 R PFAM: integrase family protein; KEGG: bvi:Bcep1808_7050 phage integrase family protein; integrase family protein complement(68348..70480) Burkholderia ambifaria MC40-6 6181577 YP_001812252.1 CDS BamMC406_6578 NC_010553.1 71555 71749 D PFAM: YcfA family protein; KEGG: bte:BTH_II1999 hypothetical protein; YcfA family protein 71555..71749 Burkholderia ambifaria MC40-6 6181578 YP_001812253.1 CDS BamMC406_6579 NC_010553.1 71816 72229 D PFAM: protein of unknown function UPF0150; KEGG: bte:BTH_II1998 hypothetical protein; hypothetical protein 71816..72229 Burkholderia ambifaria MC40-6 6181579 YP_001812254.1 CDS BamMC406_6580 NC_010553.1 72930 73955 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_A3762 putative transposase; transposase IS116/IS110/IS902 family protein 72930..73955 Burkholderia ambifaria MC40-6 6181580 YP_001812255.1 CDS BamMC406_6582 NC_010553.1 74303 74977 D KEGG: bte:BTH_II0366 transposase; transposase 74303..74977 Burkholderia ambifaria MC40-6 6181807 YP_001812256.1 CDS BamMC406_6584 NC_010553.1 75296 77992 R PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bur:Bcep18194_B0441 outer membrane protein, haemagluttinin-like; YadA domain-containing protein complement(75296..77992) Burkholderia ambifaria MC40-6 6181808 YP_001812257.1 CDS BamMC406_6587 NC_010553.1 78859 80016 D PFAM: Integrase catalytic region; KEGG: bxe:Bxe_C0741 putative transposase IS30; integrase catalytic region 78859..80016 Burkholderia ambifaria MC40-6 6181810 YP_001812258.1 CDS BamMC406_6588 NC_010553.1 80050 80940 D PFAM: Integrase catalytic region; KEGG: bxe:Bxe_A3769 putative transposase; integrase catalytic region 80050..80940 Burkholderia ambifaria MC40-6 6181584 YP_001812259.1 CDS BamMC406_6589 NC_010553.1 80978 82312 R KEGG: bch:Bcen2424_5598 hypothetical protein; hypothetical protein complement(80978..82312) Burkholderia ambifaria MC40-6 6181585 YP_001812260.1 CDS BamMC406_6590 NC_010553.1 82871 83692 D KEGG: bvi:Bcep1808_6262 hypothetical protein; hypothetical protein 82871..83692 Burkholderia ambifaria MC40-6 6181586 YP_001812261.1 CDS BamMC406_6591 NC_010553.1 83676 84632 D PFAM: Domain of unknown function DUF1814; KEGG: aav:Aave_3364 hypothetical protein; hypothetical protein 83676..84632 Burkholderia ambifaria MC40-6 6181587 YP_001812262.1 CDS BamMC406_6592 NC_010553.1 84747 85067 D KEGG: bmu:Bmul_5759 putative remnant of a transposase gene protein; hypothetical protein 84747..85067 Burkholderia ambifaria MC40-6 6181588 YP_001812263.1 CDS BamMC406_6593 NC_010553.1 85207 85827 R KEGG: bam:Bamb_4433 hypothetical protein; hypothetical protein complement(85207..85827) Burkholderia ambifaria MC40-6 6181589 YP_001812264.1 CDS BamMC406_6594 NC_010553.1 86043 86930 R PFAM: transposase mutator type; KEGG: bvi:Bcep1808_0454 transposase, mutator type; transposase mutator type complement(86043..86930) Burkholderia ambifaria MC40-6 6181590 YP_001812265.1 CDS BamMC406_6595 NC_010553.1 87164 88792 D PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: bvi:Bcep1808_6126 integrase, catalytic region; transposase 87164..88792 Burkholderia ambifaria MC40-6 6181818 YP_001812266.1 CDS BamMC406_6596 NC_010553.1 88801 89670 D PFAM: TniB family protein; KEGG: bvi:Bcep1808_6127 TniB family protein; TniB family protein 88801..89670 Burkholderia ambifaria MC40-6 6181819 YP_001812267.1 CDS BamMC406_6597 NC_010553.1 89648 90253 D KEGG: bvi:Bcep1808_6128 hypothetical protein; hypothetical protein 89648..90253 Burkholderia ambifaria MC40-6 6181820 YP_001812268.1 CDS BamMC406_6598 NC_010553.1 90250 90396 D KEGG: bxe:Bxe_B1865 transposase IS66 family; transposase IS66 family 90250..90396 Burkholderia ambifaria MC40-6 6181821 YP_001812269.1 CDS BamMC406_6599 NC_010553.1 90805 91482 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mlo:mll6988 transcriptional regulator; GntR family transcriptional regulator 90805..91482 Burkholderia ambifaria MC40-6 6181822 YP_001812270.1 CDS BamMC406_6600 NC_010553.1 91611 92408 D PFAM: extracellular solute-binding protein family 3; KEGG: mpt:Mpe_A2879 putative amino acid binding protein; extracellular solute-binding protein 91611..92408 Burkholderia ambifaria MC40-6 6181823 YP_001812271.1 CDS BamMC406_6601 NC_010553.1 92408 93184 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_3309 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter, inner membrane subunit 92408..93184 Burkholderia ambifaria MC40-6 6181824 YP_001812272.1 CDS BamMC406_6602 NC_010553.1 93181 93921 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A2881 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter, inner membrane subunit 93181..93921 Burkholderia ambifaria MC40-6 6181825 YP_001812273.1 CDS BamMC406_6603 NC_010553.1 93918 94568 D PFAM: ABC transporter related; KEGG: bpd:BURPS668_A1442 amino acid ABC transporter, ATP-binding protein; ABC transporter related 93918..94568 Burkholderia ambifaria MC40-6 6181826 YP_001812274.1 CDS BamMC406_6604 NC_010553.1 94648 96018 D PFAM: aminotransferase class-III; KEGG: ret:RHE_CH02145 aminotransferase; aminotransferase 94648..96018 Burkholderia ambifaria MC40-6 6181827 YP_001812275.1 CDS BamMC406_6605 NC_010553.1 96035 97624 D PFAM: gamma-glutamyltranspeptidase; KEGG: dac:Daci_3783 gamma-glutamyltransferase; gamma-glutamyltransferase 96035..97624 Burkholderia ambifaria MC40-6 6181828 YP_001812276.1 CDS BamMC406_6607 NC_010553.1 98803 100251 D KEGG: bch:Bcen2424_6313 porin, gram-negative type; hypothetical protein 98803..100251 Burkholderia ambifaria MC40-6 6181811 YP_001812277.1 CDS BamMC406_6608 NC_010553.1 100248 100817 D PFAM: Resolvase domain; KEGG: bpm:BURPS1710b_2172 recombinase; resolvase domain-containing protein 100248..100817 Burkholderia ambifaria MC40-6 6181830 YP_001812278.1 CDS BamMC406_6609 NC_010553.1 100888 101079 R KEGG: bxe:Bxe_A1736 transposase and inactivated derivatives; transposase and inactivated derivatives complement(100888..101079) Burkholderia ambifaria MC40-6 6181831 YP_001812279.1 CDS BamMC406_6610 NC_010553.1 101183 101761 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: bxe:Bxe_C1218 putative invertase; resolvase domain-containing protein complement(101183..101761) Burkholderia ambifaria MC40-6 6181832 YP_001812280.1 CDS BamMC406_6614 NC_010553.1 105549 106052 R KEGG: bvi:Bcep1808_3481 hypothetical protein; hypothetical protein complement(105549..106052) Burkholderia ambifaria MC40-6 6181814 YP_001812281.1 CDS BamMC406_6616 NC_010553.1 106749 108068 R KEGG: bvi:Bcep1808_3481 hypothetical protein; hypothetical protein complement(106749..108068) Burkholderia ambifaria MC40-6 6181815 YP_001812282.1 CDS BamMC406_6617 NC_010553.1 108076 109338 R KEGG: lma:LmjF14.1120 kinesin K39, putative; kinesin K39, putative complement(108076..109338) Burkholderia ambifaria MC40-6 6181835 YP_001812283.1 CDS BamMC406_6618 NC_010553.1 109600 110346 D PFAM: OmpA/MotB domain protein; KEGG: bvi:Bcep1808_3483 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 109600..110346 Burkholderia ambifaria MC40-6 6181711 YP_001812284.1 CDS BamMC406_6619 NC_010553.1 110970 111305 D KEGG: bps:BPSL1706 putative HNS-like protein; putative HNS-like protein 110970..111305 Burkholderia ambifaria MC40-6 6181712 YP_001812285.1 CDS BamMC406_6620 NC_010553.1 111351 111749 D hypothetical protein 111351..111749 Burkholderia ambifaria MC40-6 6181713 YP_001812286.1 CDS BamMC406_6621 NC_010553.1 111917 112930 D KEGG: bch:Bcen2424_5225 hypothetical protein; hypothetical protein 111917..112930 Burkholderia ambifaria MC40-6 6181714 YP_001812287.1 CDS BamMC406_6622 NC_010553.1 112945 114093 D KEGG: bch:Bcen2424_5226 hypothetical protein; hypothetical protein 112945..114093 Burkholderia ambifaria MC40-6 6181715 YP_001812288.1 CDS BamMC406_6623 NC_010553.1 114134 114595 D KEGG: bch:Bcen2424_5227 hypothetical protein; hypothetical protein 114134..114595 Burkholderia ambifaria MC40-6 6181716 YP_001812289.1 CDS BamMC406_6624 NC_010553.1 114677 115039 D KEGG: rso:RSp0990 TIS1421-transposase protein A; TIS1421-transposase protein A 114677..115039 Burkholderia ambifaria MC40-6 6181717 YP_001812290.1 CDS BamMC406_6625 NC_010553.1 115085 115870 D KEGG: bch:Bcen2424_3202 hypothetical protein; hypothetical protein 115085..115870 Burkholderia ambifaria MC40-6 6181718 YP_001812291.1 CDS BamMC406_6626 NC_010553.1 115933 117687 D KEGG: sde:Sde_3915 glucosamine-fructose-6-phosphate aminotransferase, isomerising; glucosamine-fructose-6-phosphate aminotransferase, isomerising 115933..117687 Burkholderia ambifaria MC40-6 6181719 YP_001812292.1 CDS BamMC406_6627 NC_010553.1 118137 119972 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bps:BPSS1438 hypothetical protein; TPR repeat-containing protein 118137..119972 Burkholderia ambifaria MC40-6 6181720 YP_001812293.1 CDS BamMC406_6628 NC_010553.1 120015 121781 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bcn:Bcen_2088 tetratricopeptide TPR_2; TPR repeat-containing protein 120015..121781 Burkholderia ambifaria MC40-6 6181721 YP_001812294.1 CDS BamMC406_6629 NC_010553.1 121898 122137 D KEGG: mmr:Mmar10_1591 hypothetical protein; hypothetical protein 121898..122137 Burkholderia ambifaria MC40-6 6181722 YP_001812295.1 CDS BamMC406_6630 NC_010553.1 122475 122897 R PFAM: helix-turn-helix domain protein; KEGG: eca:ECA3391 putative prophage regulatory ptotein; XRE family transcriptional regulator complement(122475..122897) Burkholderia ambifaria MC40-6 6181723 YP_001812296.1 CDS BamMC406_6631 NC_010553.1 123236 124510 D KEGG: bch:Bcen2424_4586 hypothetical protein; hypothetical protein 123236..124510 Burkholderia ambifaria MC40-6 6181724 YP_001812297.1 CDS BamMC406_6632 NC_010553.1 124569 124916 R hypothetical protein complement(124569..124916) Burkholderia ambifaria MC40-6 6181725 YP_001812298.1 CDS BamMC406_6633 NC_010553.1 125444 126262 R TIGRFAM: methyltransferase FkbM family; KEGG: gbe:GbCGDNIH1_1197 hypothetical cytosolic protein; FkbM family methyltransferase complement(125444..126262) Burkholderia ambifaria MC40-6 6181726 YP_001812299.1 CDS BamMC406_6634 NC_010553.1 126468 127064 D PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: pap:PSPA7_0108 TnpR; resolvase domain-containing protein 126468..127064 Burkholderia ambifaria MC40-6 6181727 YP_001812300.1 CDS BamMC406_6635 NC_010553.1 127069 128190 D KEGG: stm:PSLT044 putative integrase protein; putative integrase protein 127069..128190 Burkholderia ambifaria MC40-6 6181728 YP_001812301.1 CDS BamMC406_6636 NC_010553.1 128548 129096 D PFAM: Fimbrial protein; KEGG: reu:Reut_A0840 fimbrial protein; fimbrial protein 128548..129096 Burkholderia ambifaria MC40-6 6181783 YP_001812302.1 CDS BamMC406_6637 NC_010553.1 129176 129928 D PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: bam:Bamb_4023 pili assembly chaperone; Pili assembly chaperone, N-terminal 129176..129928 Burkholderia ambifaria MC40-6 6181784 YP_001812303.1 CDS BamMC406_6638 NC_010553.1 130037 132691 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bxe:Bxe_B2970 putative fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 130037..132691 Burkholderia ambifaria MC40-6 6181785 YP_001812304.1 CDS BamMC406_6639 NC_010553.1 132871 133701 D KEGG: spe:Spro_4138 hypothetical protein; hypothetical protein 132871..133701 Burkholderia ambifaria MC40-6 6181786 YP_001812305.1 CDS BamMC406_6640 NC_010553.1 133876 134832 D PFAM: Fimbrial protein; KEGG: pae:PA5284 hypothetical protein; fimbrial protein 133876..134832 Burkholderia ambifaria MC40-6 6181787 YP_001812306.1 CDS BamMC406_6641 NC_010553.1 135703 136860 D PFAM: Integrase catalytic region; KEGG: bxe:Bxe_C0741 putative transposase IS30; integrase catalytic region 135703..136860 Burkholderia ambifaria MC40-6 6181788 YP_001812307.1 CDS BamMC406_6643 NC_010553.1 137466 138287 D KEGG: spe:Spro_0217 putative fimbrial protein; putative fimbrial protein 137466..138287 Burkholderia ambifaria MC40-6 6181816 YP_001812308.1 CDS BamMC406_6644 NC_010553.1 138291 138791 D PFAM: CS1 type fimbrial major subunit; KEGG: spe:Spro_0216 CS1 type fimbrial major subunit; CS1 type fimbrial major subunit 138291..138791 Burkholderia ambifaria MC40-6 6181790 YP_001812309.1 CDS BamMC406_6645 NC_010553.1 138870 141572 D KEGG: spe:Spro_0215 outermembrane fimbrial usher protein; outermembrane fimbrial usher protein 138870..141572 Burkholderia ambifaria MC40-6 6181791 YP_001812310.1 CDS BamMC406_6646 NC_010553.1 141731 142807 D PFAM: CblD family pilus biogenesis initiator protein; KEGG: spe:Spro_0214 CblD family pilus biogenesis initiator protein; CblD family pilus biogenesis initiator protein 141731..142807 Burkholderia ambifaria MC40-6 6181792 YP_001812311.1 CDS BamMC406_6650 NC_010553.1 145788 146729 D PFAM: Fimbrial protein; KEGG: pau:PA14_69760 putative fimbrial protein; fimbrial protein 145788..146729 Burkholderia ambifaria MC40-6 6181700 YP_001812312.1 CDS BamMC406_6651 NC_010553.1 147094 147945 D PFAM: protein of unknown function DUF1460; KEGG: bam:Bamb_4347 protein of unknown function DUF1460; hypothetical protein 147094..147945 Burkholderia ambifaria MC40-6 6181794 YP_001812313.1 CDS BamMC406_6653 NC_010553.1 148870 149586 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cvi:CV_2401 capsula synthesis response regulator transcription regulator protein; two component LuxR family transcriptional regulator complement(148870..149586) Burkholderia ambifaria MC40-6 6181701 YP_001812314.1 CDS BamMC406_6654 NC_010553.1 149979 152468 D KEGG: bte:BTH_II0144 sensor protein EvgS precursor; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3; Hpt sensor hybrid histidine kinase 149979..152468 Burkholderia ambifaria MC40-6 6181796 YP_001812315.1 CDS BamMC406_6655 NC_010553.1 152523 154589 R KEGG: bam:Bamb_2834 Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; histidine kinase complement(152523..154589) Burkholderia ambifaria MC40-6 6181797 YP_001812316.1 CDS BamMC406_6659 NC_010553.1 158173 158796 D PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bur:Bcep18194_B0880 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 158173..158796 Burkholderia ambifaria MC40-6 6181704 YP_001812317.1 CDS BamMC406_6662 NC_010553.1 159613 159879 R PFAM: transposase IS3/IS911 family protein; KEGG: bvi:Bcep1808_5538 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(159613..159879) Burkholderia ambifaria MC40-6 6181706 YP_001812318.1 CDS BamMC406_6664 NC_010553.1 160230 160676 D hypothetical protein 160230..160676 Burkholderia ambifaria MC40-6 6181707 YP_001812319.1 CDS BamMC406_6665 NC_010553.1 160975 161652 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_4205 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 160975..161652 Burkholderia ambifaria MC40-6 6181555 YP_001812320.1 CDS BamMC406_6667 NC_010553.1 162652 163275 D PFAM: Fimbrial protein; KEGG: bpd:BURPS668_A0150 fimbrial protein; fimbrial protein 162652..163275 Burkholderia ambifaria MC40-6 6181708 YP_001812321.1 CDS BamMC406_6668 NC_010553.1 163366 164100 D PFAM: Pili assembly chaperone, N-terminal; KEGG: bpl:BURPS1106A_A0127 fimbrial assembly chaperone protein; Pili assembly chaperone, N-terminal 163366..164100 Burkholderia ambifaria MC40-6 6181557 YP_001812322.1 CDS BamMC406_6669 NC_010553.1 164304 166874 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bpl:BURPS1106A_A0128 fimbrial usher protein; fimbrial biogenesis outer membrane usher protein 164304..166874 Burkholderia ambifaria MC40-6 6181558 YP_001812323.1 CDS BamMC406_6670 NC_010553.1 166920 167465 D PFAM: Fimbrial protein; KEGG: bpd:BURPS668_A0153 major fimbrial subunit protein; fimbrial protein 166920..167465 Burkholderia ambifaria MC40-6 6181559 YP_001812324.1 CDS BamMC406_6671 NC_010553.1 167500 168183 D KEGG: bps:BPSS0095 hypothetical protein; hypothetical protein 167500..168183 Burkholderia ambifaria MC40-6 6181560 YP_001812325.1 CDS BamMC406_6672 NC_010553.1 168180 169838 D PFAM: OmpA/MotB domain protein; KEGG: bte:BTH_II0120 unnamed protein product; similar to putative exported protein; OmpA/MotB domain-containing protein 168180..169838 Burkholderia ambifaria MC40-6 6181561 YP_001812326.1 CDS BamMC406_6673 NC_010553.1 170205 170762 D TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: bte:BTH_II0121 protein of unknown function (DUF770) superfamily; type VI secretion protein 170205..170762 Burkholderia ambifaria MC40-6 6181562 YP_001812327.1 CDS BamMC406_6674 NC_010553.1 170814 172313 D TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: bte:BTH_II0122 protein of unknown function (DUF877) superfamily; EvpB family type VI secretion protein 170814..172313 Burkholderia ambifaria MC40-6 6181563 YP_001812328.1 CDS BamMC406_6675 NC_010553.1 172518 173000 D PFAM: protein of unknown function DUF796; KEGG: bpd:BURPS668_A0159 SciM protein; hypothetical protein 172518..173000 Burkholderia ambifaria MC40-6 6181564 YP_001812329.1 CDS BamMC406_6676 NC_010553.1 173099 173638 D KEGG: bte:BTH_II0124 lipoprotein, putative; putative lipoprotein 173099..173638 Burkholderia ambifaria MC40-6 6181565 YP_001812330.1 CDS BamMC406_6677 NC_010553.1 173642 174991 D TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bte:BTH_II0125 bacterial protein of unknown function (DUF876) superfamily; type VI secretion protein 173642..174991 Burkholderia ambifaria MC40-6 6181566 YP_001812331.1 CDS BamMC406_6678 NC_010553.1 174988 176298 D TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bpl:BURPS1106A_A0139 hypothetical protein; hypothetical protein 174988..176298 Burkholderia ambifaria MC40-6 6181567 YP_001812332.1 CDS BamMC406_6679 NC_010553.1 176307 180215 D TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bte:BTH_II0127 lipoprotein, putative; type VI secretion protein IcmF 176307..180215 Burkholderia ambifaria MC40-6 6181568 YP_001812333.1 CDS BamMC406_6680 NC_010553.1 180212 181018 D KEGG: stm:STM0286 putative cytoplasmic protein; putative cytoplasmic protein 180212..181018 Burkholderia ambifaria MC40-6 6181569 YP_001812334.1 CDS BamMC406_6681 NC_010553.1 180999 181562 D KEGG: bpd:BURPS668_A0165 hypothetical protein; hypothetical protein 180999..181562 Burkholderia ambifaria MC40-6 6181570 YP_001812335.1 CDS BamMC406_6682 NC_010553.1 181653 184826 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bpd:BURPS668_A0166 rhs element Vgr protein; type VI secretion system Vgr family protein 181653..184826 Burkholderia ambifaria MC40-6 6181571 YP_001812336.1 CDS BamMC406_6683 NC_010553.1 184938 185204 D PFAM: PAAR repeat-containing protein; KEGG: bte:BTH_II0130 rhs family protein; PAAR repeat-containing protein 184938..185204 Burkholderia ambifaria MC40-6 6181572 YP_001812337.1 CDS BamMC406_6684 NC_010553.1 185225 188674 D TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: bte:BTH_II0131 rhs1 protein; YD repeat-containing protein 185225..188674 Burkholderia ambifaria MC40-6 6181591 YP_001812338.1 CDS BamMC406_6685 NC_010553.1 188880 190232 R KEGG: bpm:BURPS1710b_A1616 hypothetical protein; hypothetical protein complement(188880..190232) Burkholderia ambifaria MC40-6 6181592 YP_001812339.1 CDS BamMC406_6686 NC_010553.1 190263 191291 R PFAM: Fimbrial protein; KEGG: bpd:BURPS668_A0169 hypothetical protein; fimbrial protein complement(190263..191291) Burkholderia ambifaria MC40-6 6181593 YP_001812340.1 CDS BamMC406_6687 NC_010553.1 191342 192406 R PFAM: ImpA domain protein; KEGG: bpd:BURPS668_A0170 ImpA-related N-terminal family protein; ImpA domain-containing protein complement(191342..192406) Burkholderia ambifaria MC40-6 6181594 YP_001812341.1 CDS BamMC406_6688 NC_010553.1 192403 193464 R TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: bte:BTH_II0135 putative cytoplasmic protein; type VI secretion protein complement(192403..193464) Burkholderia ambifaria MC40-6 6181595 YP_001812342.1 CDS BamMC406_6689 NC_010553.1 193468 195348 R TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bpd:BURPS668_A0172 hypothetical protein; type VI secretion protein complement(193468..195348) Burkholderia ambifaria MC40-6 6181596 YP_001812343.1 CDS BamMC406_6690 NC_010553.1 195350 195871 R TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: bpd:BURPS668_A0173 hypothetical protein; type VI secretion system lysozyme-related protein complement(195350..195871) Burkholderia ambifaria MC40-6 6181597 YP_001812344.1 CDS BamMC406_6691 NC_010553.1 195855 196715 R PFAM: virulence protein SciE type; KEGG: bte:BTH_II0138 ImpE protein superfamily; virulence protein SciE type complement(195855..196715) Burkholderia ambifaria MC40-6 6181598 YP_001812345.1 CDS BamMC406_6692 NC_010553.1 196696 197721 R KEGG: bps:BPSS0115 hypothetical protein; hypothetical protein complement(196696..197721) Burkholderia ambifaria MC40-6 6181599 YP_001812346.1 CDS BamMC406_6693 NC_010553.1 198229 200898 D KEGG: bte:BTH_II0140 ClpA/B type protease; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase 198229..200898 Burkholderia ambifaria MC40-6 6181600 YP_001812347.1 CDS BamMC406_6695 NC_010553.1 202460 202663 R hypothetical protein complement(202460..202663) Burkholderia ambifaria MC40-6 6181709 YP_001812348.1 CDS BamMC406_6696 NC_010553.1 202908 203204 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bmu:Bmul_5655 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(202908..203204) Burkholderia ambifaria MC40-6 6181602 YP_001812349.1 CDS BamMC406_6697 NC_010553.1 203604 203933 R hypothetical protein complement(203604..203933) Burkholderia ambifaria MC40-6 6181603 YP_001812350.1 CDS BamMC406_6698 NC_010553.1 203943 204506 R hypothetical protein complement(203943..204506) Burkholderia ambifaria MC40-6 6181604 YP_001812351.1 CDS BamMC406_6700 NC_010553.1 205118 205513 R KEGG: bch:Bcen2424_5941 hypothetical protein; hypothetical protein complement(205118..205513) Burkholderia ambifaria MC40-6 6181710 YP_001812352.1 CDS BamMC406_6701 NC_010553.1 205686 206924 R PFAM: sodium:dicarboxylate symporter; KEGG: bch:Bcen2424_5942 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(205686..206924) Burkholderia ambifaria MC40-6 6181606 YP_001812353.1 CDS BamMC406_6702 NC_010553.1 206908 207570 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bch:Bcen2424_5943 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(206908..207570) Burkholderia ambifaria MC40-6 6181607 YP_001812354.1 CDS BamMC406_6703 NC_010553.1 207721 208185 D PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_5944 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 207721..208185 Burkholderia ambifaria MC40-6 6181608 YP_001812355.1 CDS BamMC406_6704 NC_010553.1 208988 209893 R KEGG: shn:Shewana3_2179 hypothetical protein; hypothetical protein complement(208988..209893) Burkholderia ambifaria MC40-6 6181627 YP_001812356.1 CDS BamMC406_6705 NC_010553.1 210041 210196 R hypothetical protein complement(210041..210196) Burkholderia ambifaria MC40-6 6181628 YP_001812357.1 CDS BamMC406_6706 NC_010553.1 210226 210978 R KEGG: dps:DP0415 hypothetical protein; hypothetical protein complement(210226..210978) Burkholderia ambifaria MC40-6 6181629 YP_001812358.1 CDS BamMC406_6707 NC_010553.1 211034 211288 R hypothetical protein complement(211034..211288) Burkholderia ambifaria MC40-6 6181630 YP_001812359.1 CDS BamMC406_6708 NC_010553.1 211486 212616 R KEGG: bvi:Bcep1808_7338 hypothetical protein; hypothetical protein complement(211486..212616) Burkholderia ambifaria MC40-6 6181631 YP_001812360.1 CDS BamMC406_6709 NC_010553.1 212688 213113 R KEGG: eba:p1D12 weak: Alr7543 protein; hypothetical protein complement(212688..213113) Burkholderia ambifaria MC40-6 6181632 YP_001812361.1 CDS BamMC406_6710 NC_010553.1 213420 213638 D hypothetical protein 213420..213638 Burkholderia ambifaria MC40-6 6181633 YP_001812362.1 CDS BamMC406_6711 NC_010553.1 213967 214110 R hypothetical protein complement(213967..214110) Burkholderia ambifaria MC40-6 6181634 YP_001812363.1 CDS BamMC406_6712 NC_010553.1 215083 215709 D hypothetical protein 215083..215709 Burkholderia ambifaria MC40-6 6181635 YP_001812364.1 CDS BamMC406_6713 NC_010553.1 215835 216011 R hypothetical protein complement(215835..216011) Burkholderia ambifaria MC40-6 6181636 YP_001812365.1 CDS BamMC406_6714 NC_010553.1 216293 216514 R KEGG: ade:Adeh_3278 hypothetical protein; hypothetical protein complement(216293..216514) Burkholderia ambifaria MC40-6 6181637 YP_001812366.1 CDS BamMC406_6715 NC_010553.1 216687 217034 R hypothetical protein complement(216687..217034) Burkholderia ambifaria MC40-6 6181638 YP_001812367.1 CDS BamMC406_6716 NC_010553.1 217240 217491 R hypothetical protein complement(217240..217491) Burkholderia ambifaria MC40-6 6181639 YP_001812368.1 CDS BamMC406_6717 NC_010553.1 217534 217782 R KEGG: bch:Bcen2424_6887 hypothetical protein; hypothetical protein complement(217534..217782) Burkholderia ambifaria MC40-6 6181640 YP_001812369.1 CDS BamMC406_6718 NC_010553.1 217795 218277 R KEGG: bvi:Bcep1808_6889 hypothetical protein; hypothetical protein complement(217795..218277) Burkholderia ambifaria MC40-6 6181641 YP_001812370.1 CDS BamMC406_6719 NC_010553.1 218528 218752 R hypothetical protein complement(218528..218752) Burkholderia ambifaria MC40-6 6181642 YP_001812371.1 CDS BamMC406_6720 NC_010553.1 218799 219011 R KEGG: bra:BRADO1846 hypothetical protein; hypothetical protein complement(218799..219011) Burkholderia ambifaria MC40-6 6181643 YP_001812372.1 CDS BamMC406_6721 NC_010553.1 219129 219296 R hypothetical protein complement(219129..219296) Burkholderia ambifaria MC40-6 6181644 YP_001812373.1 CDS BamMC406_6722 NC_010553.1 219586 219852 R hypothetical protein complement(219586..219852) Burkholderia ambifaria MC40-6 6181663 YP_001812374.1 CDS BamMC406_6723 NC_010553.1 219868 220299 R hypothetical protein complement(219868..220299) Burkholderia ambifaria MC40-6 6181664 YP_001812375.1 CDS BamMC406_6724 NC_010553.1 220268 220459 R hypothetical protein complement(220268..220459) Burkholderia ambifaria MC40-6 6181665 YP_001812376.1 CDS BamMC406_6725 NC_010553.1 220685 221314 R hypothetical protein complement(220685..221314) Burkholderia ambifaria MC40-6 6181666 YP_001812377.1 CDS BamMC406_6726 NC_010553.1 221346 221507 R hypothetical protein complement(221346..221507) Burkholderia ambifaria MC40-6 6181667 YP_001812378.1 CDS BamMC406_6727 NC_010553.1 221703 222047 R KEGG: scl:sce1778 hypothetical protein; hypothetical protein complement(221703..222047) Burkholderia ambifaria MC40-6 6181668 YP_001812379.1 CDS BamMC406_6728 NC_010553.1 222185 222427 R KEGG: psb:Psyr_1432 hypothetical protein; hypothetical protein complement(222185..222427) Burkholderia ambifaria MC40-6 6181669 YP_001812380.1 CDS BamMC406_6729 NC_010553.1 222440 222859 R KEGG: hin:HI1406 hypothetical protein; hypothetical protein complement(222440..222859) Burkholderia ambifaria MC40-6 6181670 YP_001812381.1 CDS BamMC406_6730 NC_010553.1 222884 223336 R KEGG: bur:Bcep18194_B2519 hypothetical protein; hypothetical protein complement(222884..223336) Burkholderia ambifaria MC40-6 6181671 YP_001812382.1 CDS BamMC406_6731 NC_010553.1 223443 224180 R KEGG: bxe:Bxe_C0810 hypothetical protein; hypothetical protein complement(223443..224180) Burkholderia ambifaria MC40-6 6181672 YP_001812383.1 CDS BamMC406_6732 NC_010553.1 224236 224565 R KEGG: aba:Acid345_1310 hypothetical protein; hypothetical protein complement(224236..224565) Burkholderia ambifaria MC40-6 6181673 YP_001812384.1 CDS BamMC406_6733 NC_010553.1 224593 225567 R hypothetical protein complement(224593..225567) Burkholderia ambifaria MC40-6 6181674 YP_001812385.1 CDS BamMC406_6734 NC_010553.1 225581 226093 R KEGG: eba:ebA7272 hypothetical protein; hypothetical protein complement(225581..226093) Burkholderia ambifaria MC40-6 6181675 YP_001812386.1 CDS BamMC406_6735 NC_010553.1 226112 226840 R KEGG: pna:Pnap_4010 hypothetical protein; hypothetical protein complement(226112..226840) Burkholderia ambifaria MC40-6 6181676 YP_001812387.1 CDS BamMC406_6736 NC_010553.1 226948 227394 R hypothetical protein complement(226948..227394) Burkholderia ambifaria MC40-6 6181677 YP_001812388.1 CDS BamMC406_6737 NC_010553.1 228245 228511 R hypothetical protein complement(228245..228511) Burkholderia ambifaria MC40-6 6181678 YP_001812389.1 CDS BamMC406_6738 NC_010553.1 228527 228877 R hypothetical protein complement(228527..228877) Burkholderia ambifaria MC40-6 6181679 YP_001812390.1 CDS BamMC406_6739 NC_010553.1 228932 229099 R hypothetical protein complement(228932..229099) Burkholderia ambifaria MC40-6 6181680 YP_001812391.1 CDS BamMC406_6740 NC_010553.1 229122 229442 R PFAM: PemK family protein; KEGG: bvi:Bcep1808_5564 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin, MazF complement(229122..229442) Burkholderia ambifaria MC40-6 6181645 YP_001812392.1 CDS BamMC406_6741 NC_010553.1 229436 229663 R KEGG: bvi:Bcep1808_5563 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin, MazE complement(229436..229663) Burkholderia ambifaria MC40-6 6181646 YP_001812393.1 CDS BamMC406_6742 NC_010553.1 229772 230482 R PFAM: integrase family protein; KEGG: eba:p1B207 putative site-specific recombinase; integrase family protein complement(229772..230482) Burkholderia ambifaria MC40-6 6181647 YP_001812394.1 CDS BamMC406_6743 NC_010553.1 230634 230960 D SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: bmu:Bmul_5701 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 230634..230960 Burkholderia ambifaria MC40-6 6181648 YP_001812395.1 CDS BamMC406_6744 NC_010553.1 231088 231879 D KEGG: bch:Bcen2424_6868 putative uncharacterized conserved protein; hypothetical protein 231088..231879 Burkholderia ambifaria MC40-6 6181649 YP_001812396.1 CDS BamMC406_6745 NC_010553.1 232122 232448 R hypothetical protein complement(232122..232448) Burkholderia ambifaria MC40-6 6181650 YP_001812397.1 CDS BamMC406_6746 NC_010553.1 232641 233528 R PFAM: protein of unknown function DUF955; KEGG: xau:Xaut_0551 protein of unknown function DUF955; hypothetical protein complement(232641..233528) Burkholderia ambifaria MC40-6 6181651 YP_001812398.1 CDS BamMC406_6747 NC_010553.1 233532 233879 R PFAM: helix-turn-helix domain protein; KEGG: xau:Xaut_0552 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(233532..233879) Burkholderia ambifaria MC40-6 6181652 YP_001812399.1 CDS BamMC406_6748 NC_010553.1 233981 234946 D KEGG: mes:Meso_4404 DNA polymerase, beta-like region; DNA polymerase, beta-like region 233981..234946 Burkholderia ambifaria MC40-6 6181653 YP_001812400.1 CDS BamMC406_6749 NC_010553.1 234957 235469 D KEGG: nha:Nham_4494 hypothetical protein; hypothetical protein 234957..235469 Burkholderia ambifaria MC40-6 6181654 YP_001812401.1 CDS BamMC406_6750 NC_010553.1 235469 236404 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: nha:Nham_4495 AAA ATPase, central region; ATPase central domain-containing protein 235469..236404 Burkholderia ambifaria MC40-6 6181655 YP_001812402.1 CDS BamMC406_6751 NC_010553.1 236401 237129 D KEGG: ajs:Ajs_1271 hypothetical protein; hypothetical protein 236401..237129 Burkholderia ambifaria MC40-6 6181656 YP_001812403.1 CDS BamMC406_6752 NC_010553.1 237188 237628 R KEGG: bmu:Bmul_5713 TetR family transcriptional regulator-like protein; TetR family transcriptional regulator-like protein complement(237188..237628) Burkholderia ambifaria MC40-6 6181657 YP_001812404.1 CDS BamMC406_6753 NC_010553.1 237625 239577 R KEGG: bmu:Bmul_5714 site-specific recombinase, phage integrase family protein; site-specific recombinase, phage integrase family protein complement(237625..239577) Burkholderia ambifaria MC40-6 6181658 YP_001812405.1 CDS BamMC406_6754 NC_010553.1 239574 241475 R KEGG: bmu:Bmul_6273 hypothetical protein; hypothetical protein complement(239574..241475) Burkholderia ambifaria MC40-6 6181659 YP_001812406.1 CDS BamMC406_6755 NC_010553.1 241490 242668 R PFAM: integrase family protein; KEGG: bmu:Bmul_5720 integrase family protein; integrase family protein complement(241490..242668) Burkholderia ambifaria MC40-6 6181660 YP_001812407.1 CDS BamMC406_6756 NC_010553.1 243389 243892 D KEGG: reh:H16_B1262 hypothetical protein; hypothetical protein 243389..243892 Burkholderia ambifaria MC40-6 6181661 YP_001812408.1 CDS BamMC406_6757 NC_010553.1 243889 244368 D PFAM: RES domain protein; KEGG: reh:H16_B1263 hypothetical membrane protein; RES domain-containing protein 243889..244368 Burkholderia ambifaria MC40-6 6181662 YP_001812409.1 CDS BamMC406_6758 NC_010553.1 244381 245418 R KEGG: bur:Bcep18194_B3114 hypothetical protein; hypothetical protein complement(244381..245418) Burkholderia ambifaria MC40-6 6181681 YP_001812410.1 CDS BamMC406_6759 NC_010553.1 245415 245873 R KEGG: bmn:BMA10247_A1209 hypothetical protein; hypothetical protein complement(245415..245873) Burkholderia ambifaria MC40-6 6181682 YP_001812411.1 CDS BamMC406_6760 NC_010553.1 245886 246734 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bch:Bcen2424_5787 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(245886..246734) Burkholderia ambifaria MC40-6 6181683 YP_001812412.1 CDS BamMC406_6761 NC_010553.1 246735 248528 R PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: bam:Bamb_5444 polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein complement(246735..248528) Burkholderia ambifaria MC40-6 6181684 YP_001812413.1 CDS BamMC406_6762 NC_010553.1 248528 248677 R hypothetical protein complement(248528..248677) Burkholderia ambifaria MC40-6 6181685 YP_001812414.1 CDS BamMC406_6763 NC_010553.1 248674 250710 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bxe:Bxe_B0152 filamentous haemagglutinin; filamentous haemagglutinin outer membrane protein complement(248674..250710) Burkholderia ambifaria MC40-6 6181686 YP_001812415.1 CDS BamMC406_6764 NC_010553.1 250816 251451 D PFAM: phosphotransferase KptA/Tpt1; KEGG: pfl:PFL_5848 RNA 2'-phosphotransferase-like protein; phosphate acetyltransferase 250816..251451 Burkholderia ambifaria MC40-6 6181687 YP_001812416.1 CDS BamMC406_6765 NC_010553.1 251453 251845 R hypothetical protein complement(251453..251845) Burkholderia ambifaria MC40-6 6181688 YP_001812417.1 CDS BamMC406_6766 NC_010553.1 251842 260298 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bam:Bamb_5446 adhesin HecA family; filamentous haemagglutinin outer membrane protein complement(251842..260298) Burkholderia ambifaria MC40-6 6181689 YP_001812418.1 CDS BamMC406_6767 NC_010553.1 260855 261571 D KEGG: bch:Bcen2424_6829 hypothetical protein; hypothetical protein 260855..261571 Burkholderia ambifaria MC40-6 6181690 YP_001812419.1 CDS BamMC406_6768 NC_010553.1 261510 262970 D KEGG: bmu:Bmul_6270 hypothetical protein; hypothetical protein 261510..262970 Burkholderia ambifaria MC40-6 6181691 YP_001812420.1 CDS BamMC406_6769 NC_010553.1 262977 266126 D KEGG: bch:Bcen2424_6871 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III, alpha subunit 262977..266126 Burkholderia ambifaria MC40-6 6181692 YP_001812421.1 CDS BamMC406_6770 NC_010553.1 266211 267677 R PFAM: outer membrane efflux protein; KEGG: bvi:Bcep1808_6077 transcriptional regulator, fis family; outer membrane efflux protein complement(266211..267677) Burkholderia ambifaria MC40-6 6181693 YP_001812422.1 CDS BamMC406_6771 NC_010553.1 267769 269196 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bvi:Bcep1808_6078 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein complement(267769..269196) Burkholderia ambifaria MC40-6 6181694 YP_001812423.1 CDS BamMC406_6772 NC_010553.1 269193 271331 R KEGG: cvi:CV_0513 hemolysin B; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; type I secretion system ATPase complement(269193..271331) Burkholderia ambifaria MC40-6 6181695 YP_001812424.1 CDS BamMC406_6773 NC_010553.1 271439 277216 R PFAM: Hemolysin-type calcium-binding region; Haemolysin-type calcium binding domain protein; KEGG: psp:PSPPH_1896 iron-regulated protein FrpC, putative; hemolysin-type calcium binding domain-containing protein complement(271439..277216) Burkholderia ambifaria MC40-6 6181696 YP_001812425.1 CDS BamMC406_6774 NC_010553.1 277242 277787 R KEGG: plu:plu0638 hypothetical protein; hypothetical protein complement(277242..277787) Burkholderia ambifaria MC40-6 6181697 YP_001812426.1 CDS BamMC406_6777 NC_010553.1 280212 280511 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bvi:Bcep1808_7141 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 280212..280511 Burkholderia ambifaria MC40-6 6181729 YP_001812427.1 CDS BamMC406_6778 NC_010553.1 280603 280995 D KEGG: bvi:Bcep1808_7140 hypothetical protein; hypothetical protein 280603..280995 Burkholderia ambifaria MC40-6 6181730 YP_001812428.1 CDS BamMC406_6779 NC_010553.1 281214 282143 D PFAM: integrase family protein; KEGG: bvi:Bcep1808_7139 phage integrase family protein; integrase family protein 281214..282143 Burkholderia ambifaria MC40-6 6181731 YP_001812429.1 CDS BamMC406_6780 NC_010553.1 282214 282693 D KEGG: bvi:Bcep1808_7138 hypothetical protein; hypothetical protein 282214..282693 Burkholderia ambifaria MC40-6 6181732 YP_001812430.1 CDS BamMC406_6781 NC_010553.1 283033 283698 R hypothetical protein complement(283033..283698) Burkholderia ambifaria MC40-6 6181733 YP_001812431.1 CDS BamMC406_6782 NC_010553.1 284279 286081 R KEGG: bvi:Bcep1808_7014 hypothetical protein; hypothetical protein complement(284279..286081) Burkholderia ambifaria MC40-6 6181734 YP_001812432.1 CDS BamMC406_6783 NC_010553.1 286154 286714 R KEGG: bvi:Bcep1808_7132 putative endonuclease; putative endonuclease complement(286154..286714) Burkholderia ambifaria MC40-6 6181735 YP_001812433.1 CDS BamMC406_6784 NC_010553.1 286785 286982 R hypothetical protein complement(286785..286982) Burkholderia ambifaria MC40-6 6181736 YP_001812434.1 CDS BamMC406_6785 NC_010553.1 286998 287180 R hypothetical protein complement(286998..287180) Burkholderia ambifaria MC40-6 6181737 YP_001812435.1 CDS BamMC406_6786 NC_010553.1 287260 289581 R KEGG: bvi:Bcep1808_7131 putative ATPase involved in DNA repair; putative ATPase involved in DNA repair complement(287260..289581) Burkholderia ambifaria MC40-6 6181738 YP_001812436.1 CDS BamMC406_6787 NC_010553.1 289569 290090 R KEGG: bvi:Bcep1808_7130 hypothetical protein; hypothetical protein complement(289569..290090) Burkholderia ambifaria MC40-6 6181739 YP_001812437.1 CDS BamMC406_6788 NC_010553.1 290292 291659 R KEGG: bvi:Bcep1808_7129 DNA repair exonuclease-like protein; DNA repair exonuclease-like protein complement(290292..291659) Burkholderia ambifaria MC40-6 6181740 YP_001812438.1 CDS BamMC406_6789 NC_010553.1 291735 292220 R PFAM: conserved hypothetical protein; KEGG: bvi:Bcep1808_7128 conserved hypothetical protein CHP02464; hypothetical protein complement(291735..292220) Burkholderia ambifaria MC40-6 6181741 YP_001812439.1 CDS BamMC406_6790 NC_010553.1 292389 293699 R KEGG: bvi:Bcep1808_7127 hypothetical protein; hypothetical protein complement(292389..293699) Burkholderia ambifaria MC40-6 6181742 YP_001812440.1 CDS BamMC406_6791 NC_010553.1 293696 293962 R KEGG: bvi:Bcep1808_7126 hypothetical protein; hypothetical protein complement(293696..293962) Burkholderia ambifaria MC40-6 6181743 YP_001812441.1 CDS BamMC406_6792 NC_010553.1 294583 295200 D KEGG: bvi:Bcep1808_7125 hypothetical protein; hypothetical protein 294583..295200 Burkholderia ambifaria MC40-6 6181744 YP_001812442.1 CDS BamMC406_6793 NC_010553.1 295373 296107 D KEGG: xau:Xaut_0293 translation initiation factor IF-2; hypothetical protein 295373..296107 Burkholderia ambifaria MC40-6 6181745 YP_001812443.1 CDS BamMC406_6794 NC_010553.1 296118 296525 D PFAM: protein of unknown function DUF583; KEGG: bvi:Bcep1808_7123 protein of unknown function DUF583; hypothetical protein 296118..296525 Burkholderia ambifaria MC40-6 6181746 YP_001812444.1 CDS BamMC406_6795 NC_010553.1 296925 298640 R PFAM: UvrD/REP helicase; KEGG: bvi:Bcep1808_7122 UvrD/REP helicase; UvrD/REP helicase complement(296925..298640) Burkholderia ambifaria MC40-6 6181801 YP_001812445.1 CDS BamMC406_6796 NC_010553.1 298650 299546 R KEGG: bmu:Bmul_5617 hypothetical protein; hypothetical protein complement(298650..299546) Burkholderia ambifaria MC40-6 6181802 YP_001812446.1 CDS BamMC406_6797 NC_010553.1 299769 300206 R KEGG: bbt:BBta_3367 conjugal transfer protein TrbE; hypothetical protein complement(299769..300206) Burkholderia ambifaria MC40-6 6181803 YP_001812447.1 CDS BamMC406_6798 NC_010553.1 300231 300836 R KEGG: bvi:Bcep1808_7120 hypothetical protein; hypothetical protein complement(300231..300836) Burkholderia ambifaria MC40-6 6181804 YP_001812448.1 CDS BamMC406_6799 NC_010553.1 300826 301110 R KEGG: bmu:Bmul_5615 hypothetical protein; hypothetical protein complement(300826..301110) Burkholderia ambifaria MC40-6 6181805 YP_001812449.1 CDS BamMC406_6800 NC_010553.1 301067 301585 R KEGG: bmu:Bmul_5614 hypothetical protein; hypothetical protein complement(301067..301585) Burkholderia ambifaria MC40-6 6181806 YP_001815513.1 CDS BamMC406_5516 NC_010557.1 39 851 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_5749 transcriptional regulator, TetR family; TetR family transcriptional regulator 39..851 Burkholderia ambifaria MC40-6 6181994 YP_001815514.1 CDS BamMC406_5517 NC_010557.1 909 1763 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bam:Bamb_5750 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase FAD-binding 909..1763 Burkholderia ambifaria MC40-6 6181973 YP_001815515.1 CDS BamMC406_5518 NC_010557.1 1744 4566 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_5751 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1744..4566 Burkholderia ambifaria MC40-6 6181974 YP_001815516.1 CDS BamMC406_5519 NC_010557.1 4595 5872 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5752 major facilitator superfamily MFS_1; major facilitator transporter 4595..5872 Burkholderia ambifaria MC40-6 6181975 YP_001815517.1 CDS BamMC406_5520 NC_010557.1 5945 6724 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_5753 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5945..6724) Burkholderia ambifaria MC40-6 6181976 YP_001815518.1 CDS BamMC406_5521 NC_010557.1 6875 10396 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(6875..10396) Burkholderia ambifaria MC40-6 6181977 YP_001815519.1 CDS BamMC406_5523 NC_010557.1 11683 13338 D PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_5763 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 11683..13338 Burkholderia ambifaria MC40-6 6182420 YP_001815520.1 CDS BamMC406_5524 NC_010557.1 13335 14222 D KEGG: bam:Bamb_5764 hypothetical protein; hypothetical protein 13335..14222 Burkholderia ambifaria MC40-6 6181979 YP_001815521.1 CDS BamMC406_5525 NC_010557.1 14222 15328 D PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: bam:Bamb_5765 3-oxoacyl-(acyl-carrier-protein) synthase; Beta-ketoacyl-acyl-carrier-protein synthase I 14222..15328 Burkholderia ambifaria MC40-6 6181980 YP_001815522.1 CDS BamMC406_5526 NC_010557.1 15325 16323 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 15325..16323 Burkholderia ambifaria MC40-6 6181981 YP_001815523.1 CDS BamMC406_5527 NC_010557.1 16329 17225 D PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_5767 beta-lactamase domain protein; beta-lactamase domain-containing protein 16329..17225 Burkholderia ambifaria MC40-6 6181982 YP_001815524.1 CDS BamMC406_5528 NC_010557.1 17315 21133 D PFAM: AMP-dependent synthetase and ligase; acyl-CoA dehydrogenase domain protein; phosphopantetheine-binding; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_5768 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 17315..21133 Burkholderia ambifaria MC40-6 6181983 YP_001815525.1 CDS BamMC406_5529 NC_010557.1 21145 23283 D KEGG: bam:Bamb_5769 hypothetical protein; hypothetical protein 21145..23283 Burkholderia ambifaria MC40-6 6181984 YP_001815526.1 CDS BamMC406_5530 NC_010557.1 23463 24317 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bam:Bamb_5770 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase complement(23463..24317) Burkholderia ambifaria MC40-6 6181985 YP_001815527.1 CDS BamMC406_5531 NC_010557.1 24356 25549 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(24356..25549) Burkholderia ambifaria MC40-6 6181986 YP_001815528.1 CDS BamMC406_5532 NC_010557.1 25597 27270 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: bur:Bcep18194_C6873 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(25597..27270) Burkholderia ambifaria MC40-6 6181987 YP_001815529.1 CDS BamMC406_5533 NC_010557.1 27305 29095 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_5773 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(27305..29095) Burkholderia ambifaria MC40-6 6181988 YP_001815530.1 CDS BamMC406_5534 NC_010557.1 29590 30507 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5774 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(29590..30507) Burkholderia ambifaria MC40-6 6181989 YP_001815531.1 CDS BamMC406_5535 NC_010557.1 30647 31411 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5775 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 30647..31411 Burkholderia ambifaria MC40-6 6181990 YP_001815532.1 CDS BamMC406_5536 NC_010557.1 31486 32193 D PFAM: Pirin domain protein; KEGG: bam:Bamb_5776 pirin domain protein domain protein; pirin domain-containing protein 31486..32193 Burkholderia ambifaria MC40-6 6181991 YP_001815533.1 CDS BamMC406_5537 NC_010557.1 32271 32867 R PFAM: oxidoreductase domain protein; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mlo:mlr5281 hypothetical protein; coenzyme F420-dependent NADP oxidoreductase complement(32271..32867) Burkholderia ambifaria MC40-6 6181992 YP_001815534.1 CDS BamMC406_5538 NC_010557.1 32895 33662 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bat:BAS1712 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(32895..33662) Burkholderia ambifaria MC40-6 6181993 YP_001815535.1 CDS BamMC406_5539 NC_010557.1 33676 34410 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr5278 glucose dehydrogenase; short-chain dehydrogenase/reductase SDR complement(33676..34410) Burkholderia ambifaria MC40-6 6182338 YP_001815536.1 CDS BamMC406_5540 NC_010557.1 34517 35458 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A1130 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 34517..35458 Burkholderia ambifaria MC40-6 6182339 YP_001815537.1 CDS BamMC406_5541 NC_010557.1 35852 36442 D KEGG: bam:Bamb_5777 putative transcriptional regulator protein; putative transcriptional regulator protein 35852..36442 Burkholderia ambifaria MC40-6 6182340 YP_001815538.1 CDS pntA NC_010557.1 36988 38589 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 36988..38589 Burkholderia ambifaria MC40-6 6182341 YP_001815539.1 CDS BamMC406_5543 NC_010557.1 38603 40015 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: bam:Bamb_5779 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 38603..40015 Burkholderia ambifaria MC40-6 6182342 YP_001815540.1 CDS BamMC406_5544 NC_010557.1 40125 41198 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bam:Bamb_5780 dihydrokaempferol 4-reductase; NAD-dependent epimerase/dehydratase 40125..41198 Burkholderia ambifaria MC40-6 6182343 YP_001815541.1 CDS BamMC406_5545 NC_010557.1 41198 41371 D hypothetical protein 41198..41371 Burkholderia ambifaria MC40-6 6182344 YP_001815542.1 CDS BamMC406_5546 NC_010557.1 41353 42474 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5781 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(41353..42474) Burkholderia ambifaria MC40-6 6182345 YP_001815543.1 CDS BamMC406_5547 NC_010557.1 42516 44150 R PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_5782 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(42516..44150) Burkholderia ambifaria MC40-6 6182346 YP_001815544.1 CDS BamMC406_5548 NC_010557.1 44470 45570 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5783 transcriptional regulator, AraC family; AraC family transcriptional regulator 44470..45570 Burkholderia ambifaria MC40-6 6182347 YP_001815545.1 CDS BamMC406_5549 NC_010557.1 45597 47093 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5784 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(45597..47093) Burkholderia ambifaria MC40-6 6182348 YP_001815546.1 CDS BamMC406_5550 NC_010557.1 47090 47809 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_5785 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(47090..47809) Burkholderia ambifaria MC40-6 6182349 YP_001815547.1 CDS BamMC406_5551 NC_010557.1 48389 48718 R KEGG: cvi:CV_2750 hypothetical protein; hypothetical protein complement(48389..48718) Burkholderia ambifaria MC40-6 6182350 YP_001815548.1 CDS BamMC406_5552 NC_010557.1 48830 50278 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bpd:BURPS668_A0390 radical SAM domain protein; radical SAM domain-containing protein complement(48830..50278) Burkholderia ambifaria MC40-6 6182351 YP_001815549.1 CDS BamMC406_5553 NC_010557.1 50378 50962 R PFAM: Domain of unknown function DUF1842; Domain of unknown function DUF1843; KEGG: rso:RSc1727 hypothetical protein; hypothetical protein complement(50378..50962) Burkholderia ambifaria MC40-6 6182352 YP_001815550.1 CDS BamMC406_5554 NC_010557.1 51009 51626 R PFAM: Domain of unknown function DUF1842; Domain of unknown function DUF1843; KEGG: rso:RSc1726 hypothetical protein; hypothetical protein complement(51009..51626) Burkholderia ambifaria MC40-6 6182353 YP_001815551.1 CDS BamMC406_5555 NC_010557.1 51675 51863 R PFAM: Domain of unknown function DUF1843; KEGG: bte:BTH_II2184 hypothetical protein; hypothetical protein complement(51675..51863) Burkholderia ambifaria MC40-6 6182354 YP_001815552.1 CDS BamMC406_5556 NC_010557.1 52243 54525 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cvi:CV_3148 hypothetical protein; putative sigma-54 specific transcriptional regulator complement(52243..54525) Burkholderia ambifaria MC40-6 6182355 YP_001815553.1 CDS BamMC406_5557 NC_010557.1 55353 56390 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5786 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(55353..56390) Burkholderia ambifaria MC40-6 6182356 YP_001815554.1 CDS BamMC406_5558 NC_010557.1 56473 57216 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: bam:Bamb_5787 NmrA family protein; NmrA family protein complement(56473..57216) Burkholderia ambifaria MC40-6 6182357 YP_001815555.1 CDS BamMC406_5559 NC_010557.1 57412 58908 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_5788 transcriptional regulator, GntR family; transcriptional regulator 57412..58908 Burkholderia ambifaria MC40-6 6182358 YP_001815556.1 CDS BamMC406_5560 NC_010557.1 59269 59769 D PFAM: OsmC family protein; KEGG: bam:Bamb_5789 OsmC family protein; OsmC family protein 59269..59769 Burkholderia ambifaria MC40-6 6182359 YP_001815557.1 CDS BamMC406_5561 NC_010557.1 59885 61093 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reh:H16_A1765 putative dehydrogenase, oxidoreductase FAD flavoprotein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(59885..61093) Burkholderia ambifaria MC40-6 6182360 YP_001815558.1 CDS BamMC406_5562 NC_010557.1 61363 62364 D KEGG: bam:Bamb_5790 membrane protein-like protein; hypothetical protein 61363..62364 Burkholderia ambifaria MC40-6 6182489 YP_001815559.1 CDS BamMC406_5563 NC_010557.1 62821 63600 D converts acetoacetate to acetone and carbon dioxide; acetoacetate decarboxylase 62821..63600 Burkholderia ambifaria MC40-6 6182490 YP_001815560.1 CDS BamMC406_5564 NC_010557.1 63616 64398 D catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 63616..64398 Burkholderia ambifaria MC40-6 6182491 YP_001815561.1 CDS BamMC406_5565 NC_010557.1 64409 65692 D PFAM: Patatin; KEGG: bvi:Bcep1808_3779 patatin; patatin 64409..65692 Burkholderia ambifaria MC40-6 6182492 YP_001815562.1 CDS BamMC406_5566 NC_010557.1 65827 66804 D KEGG: bvi:Bcep1808_3700 rhodanese domain protein; rhodanese domain-containing protein 65827..66804 Burkholderia ambifaria MC40-6 6182493 YP_001815563.1 CDS BamMC406_5567 NC_010557.1 67009 67923 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B5280 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(67009..67923) Burkholderia ambifaria MC40-6 6182494 YP_001815564.1 CDS BamMC406_5568 NC_010557.1 68093 69526 D PFAM: C4-dicarboxylate anaerobic carrier; KEGG: btl:BALH_2987 possible transporter; C4-dicarboxylate anaerobic carrier 68093..69526 Burkholderia ambifaria MC40-6 6182495 YP_001815565.1 CDS BamMC406_5569 NC_010557.1 69552 70757 D KEGG: bpd:BURPS668_A0476 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 69552..70757 Burkholderia ambifaria MC40-6 6182496 YP_001815566.1 CDS BamMC406_5570 NC_010557.1 70815 70928 D hypothetical protein 70815..70928 Burkholderia ambifaria MC40-6 6182497 YP_001815567.1 CDS BamMC406_5571 NC_010557.1 71245 71571 D KEGG: bam:Bamb_6117 hypothetical protein; hypothetical protein 71245..71571 Burkholderia ambifaria MC40-6 6182498 YP_001815568.1 CDS BamMC406_5572 NC_010557.1 71962 72387 R KEGG: hau:Haur_2057 hypothetical protein; hypothetical protein complement(71962..72387) Burkholderia ambifaria MC40-6 6182499 YP_001815569.1 CDS BamMC406_5573 NC_010557.1 72992 74545 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5791 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(72992..74545) Burkholderia ambifaria MC40-6 6182500 YP_001815570.1 CDS BamMC406_5574 NC_010557.1 74542 75984 R PFAM: secretion protein HlyD family protein; KEGG: bpd:BURPS668_1744 multidrug resistance protein; secretion protein HlyD family protein complement(74542..75984) Burkholderia ambifaria MC40-6 6182501 YP_001815571.1 CDS BamMC406_5575 NC_010557.1 76019 78127 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reu:Reut_C6204 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein complement(76019..78127) Burkholderia ambifaria MC40-6 6182502 YP_001815572.1 CDS BamMC406_5576 NC_010557.1 78596 79096 D PFAM: OsmC family protein; KEGG: bam:Bamb_5793 OsmC family protein; OsmC family protein 78596..79096 Burkholderia ambifaria MC40-6 6182503 YP_001815573.1 CDS BamMC406_5577 NC_010557.1 79292 79771 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_5794 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 79292..79771 Burkholderia ambifaria MC40-6 6182504 YP_001815574.1 CDS BamMC406_5578 NC_010557.1 79776 80180 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_5795 cupin 2, conserved barrel domain protein; cupin 79776..80180 Burkholderia ambifaria MC40-6 6182505 YP_001815575.1 CDS BamMC406_5579 NC_010557.1 80761 81336 D catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 80761..81336 Burkholderia ambifaria MC40-6 6182506 YP_001815576.1 CDS BamMC406_5580 NC_010557.1 81531 81866 R KEGG: bvi:Bcep1808_4499 hypothetical protein; hypothetical protein complement(81531..81866) Burkholderia ambifaria MC40-6 6182507 YP_001815577.1 CDS BamMC406_5581 NC_010557.1 82241 82444 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bam:Bamb_5798 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 82241..82444 Burkholderia ambifaria MC40-6 6182508 YP_001815578.1 CDS BamMC406_5582 NC_010557.1 82684 82839 D KEGG: bam:Bamb_5799 hypothetical protein; hypothetical protein 82684..82839 Burkholderia ambifaria MC40-6 6182509 YP_001815579.1 CDS BamMC406_5583 NC_010557.1 83176 83460 D KEGG: bam:Bamb_5800 hypothetical protein; hypothetical protein 83176..83460 Burkholderia ambifaria MC40-6 6182510 YP_001815580.1 CDS BamMC406_5584 NC_010557.1 83477 83716 D KEGG: bam:Bamb_5801 hypothetical protein; hypothetical protein 83477..83716 Burkholderia ambifaria MC40-6 6182667 YP_001815581.1 CDS rpsU NC_010557.1 83750 83962 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 83750..83962 Burkholderia ambifaria MC40-6 6182668 YP_001815582.1 CDS BamMC406_5586 NC_010557.1 83972 84178 D hypothetical protein 83972..84178 Burkholderia ambifaria MC40-6 6182669 YP_001815583.1 CDS BamMC406_5587 NC_010557.1 84226 84567 D KEGG: bch:Bcen2424_6503 hypothetical protein; hypothetical protein 84226..84567 Burkholderia ambifaria MC40-6 6182670 YP_001815584.1 CDS BamMC406_5588 NC_010557.1 84625 84840 D KEGG: bam:Bamb_5804 hypothetical protein; hypothetical protein 84625..84840 Burkholderia ambifaria MC40-6 6182671 YP_001815585.1 CDS BamMC406_5589 NC_010557.1 84975 85259 D KEGG: bam:Bamb_5805 hypothetical protein; hypothetical protein 84975..85259 Burkholderia ambifaria MC40-6 6182672 YP_001815586.1 CDS BamMC406_5590 NC_010557.1 85570 86262 R PFAM: protein of unknown function DUF1275; KEGG: bam:Bamb_5806 protein of unknown function DUF1275; hypothetical protein complement(85570..86262) Burkholderia ambifaria MC40-6 6182673 YP_001815587.1 CDS BamMC406_5591 NC_010557.1 86349 86795 R PFAM: DoxX family protein; KEGG: bam:Bamb_5807 DoxX family protein; DoxX family protein complement(86349..86795) Burkholderia ambifaria MC40-6 6182674 YP_001815588.1 CDS BamMC406_5592 NC_010557.1 86797 88689 R PFAM: Amidohydrolase 3; KEGG: bam:Bamb_5808 amidohydrolase 3; amidohydrolase 3 complement(86797..88689) Burkholderia ambifaria MC40-6 6182675 YP_001815589.1 CDS BamMC406_5593 NC_010557.1 88708 88875 R PFAM: protein of unknown function DUF1427; KEGG: bam:Bamb_5809 protein of unknown function DUF1427; hypothetical protein complement(88708..88875) Burkholderia ambifaria MC40-6 6182676 YP_001815590.1 CDS BamMC406_5594 NC_010557.1 89041 89727 R PFAM: isochorismatase hydrolase; KEGG: bam:Bamb_5810 isochorismatase hydrolase; isochorismatase hydrolase complement(89041..89727) Burkholderia ambifaria MC40-6 6182677 YP_001815591.1 CDS BamMC406_5595 NC_010557.1 90034 90315 D PFAM: protein of unknown function DUF1427; KEGG: bam:Bamb_5811 protein of unknown function DUF1427; hypothetical protein 90034..90315 Burkholderia ambifaria MC40-6 6182678 YP_001815592.1 CDS BamMC406_5596 NC_010557.1 90391 91299 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5812 transcriptional regulator, LysR family; LysR family transcriptional regulator 90391..91299 Burkholderia ambifaria MC40-6 6182679 YP_001815593.1 CDS BamMC406_5597 NC_010557.1 91406 93181 R PFAM: transcriptional regulator domain protein; KEGG: bam:Bamb_5813 transcriptional regulator, winged helix family; transcriptional regulator complement(91406..93181) Burkholderia ambifaria MC40-6 6182680 YP_001815594.1 CDS BamMC406_5598 NC_010557.1 93546 94367 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5814 alpha/beta hydrolase fold; alpha/beta hydrolase complement(93546..94367) Burkholderia ambifaria MC40-6 6182681 YP_001815595.1 CDS BamMC406_5599 NC_010557.1 94436 94861 R KEGG: bam:Bamb_5815 hypothetical protein; hypothetical protein complement(94436..94861) Burkholderia ambifaria MC40-6 6182682 YP_001815596.1 CDS BamMC406_5600 NC_010557.1 95264 96238 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5816 alpha/beta hydrolase fold; alpha/beta hydrolase 95264..96238 Burkholderia ambifaria MC40-6 6182683 YP_001815597.1 CDS BamMC406_5601 NC_010557.1 96573 97853 D PFAM: cytochrome c class I; KEGG: bam:Bamb_5818 cytochrome c, class I; gluconate 2-dehydrogenase (acceptor) 96573..97853 Burkholderia ambifaria MC40-6 6182684 YP_001815598.1 CDS BamMC406_5602 NC_010557.1 97850 98350 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_5819 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 97850..98350 Burkholderia ambifaria MC40-6 6182685 YP_001815599.1 CDS BamMC406_5603 NC_010557.1 98350 100611 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_5820 putative aldehyde dehydrogenase; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 98350..100611 Burkholderia ambifaria MC40-6 6182686 YP_001815600.1 CDS BamMC406_5604 NC_010557.1 100679 101596 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5821 transcriptional regulator, LysR family; LysR family transcriptional regulator 100679..101596 Burkholderia ambifaria MC40-6 6182687 YP_001815601.1 CDS BamMC406_5605 NC_010557.1 101838 103055 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5822 major facilitator superfamily MFS_1; major facilitator transporter 101838..103055 Burkholderia ambifaria MC40-6 6182688 YP_001815602.1 CDS BamMC406_5606 NC_010557.1 103224 104336 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bam:Bamb_5823 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 103224..104336 Burkholderia ambifaria MC40-6 6182689 YP_001815603.1 CDS BamMC406_5607 NC_010557.1 104412 105083 R KEGG: bam:Bamb_5824 metal-dependent phosphohydrolase; metal-dependent phosphohydrolase complement(104412..105083) Burkholderia ambifaria MC40-6 6182690 YP_001815604.1 CDS BamMC406_5608 NC_010557.1 105158 107038 R PFAM: Amidohydrolase 3; KEGG: bam:Bamb_5825 amidohydrolase 3; amidohydrolase 3 complement(105158..107038) Burkholderia ambifaria MC40-6 6182691 YP_001815605.1 CDS BamMC406_5609 NC_010557.1 107196 110042 R PFAM: transcriptional regulator domain protein; KEGG: bam:Bamb_5826 transcriptional regulator, winged helix family; transcriptional regulator complement(107196..110042) Burkholderia ambifaria MC40-6 6182692 YP_001815606.1 CDS BamMC406_5610 NC_010557.1 110433 111341 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5827 transcriptional regulator, AraC family; AraC family transcriptional regulator 110433..111341 Burkholderia ambifaria MC40-6 6182693 YP_001815607.1 CDS BamMC406_5611 NC_010557.1 111442 112383 R PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_5828 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(111442..112383) Burkholderia ambifaria MC40-6 6182694 YP_001815608.1 CDS BamMC406_5612 NC_010557.1 112617 113522 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5829 transcriptional regulator, LysR family; LysR family transcriptional regulator 112617..113522 Burkholderia ambifaria MC40-6 6182695 YP_001815609.1 CDS BamMC406_5613 NC_010557.1 113541 115016 R KEGG: bam:Bamb_5830 hypothetical protein; hypothetical protein complement(113541..115016) Burkholderia ambifaria MC40-6 6182696 YP_001815610.1 CDS BamMC406_5614 NC_010557.1 115016 115945 R KEGG: bam:Bamb_5831 hypothetical protein; hypothetical protein complement(115016..115945) Burkholderia ambifaria MC40-6 6182697 YP_001815611.1 CDS BamMC406_5615 NC_010557.1 116095 116634 R KEGG: bam:Bamb_5832 hypothetical protein; hypothetical protein complement(116095..116634) Burkholderia ambifaria MC40-6 6182698 YP_001815612.1 CDS BamMC406_5616 NC_010557.1 116773 117822 R PFAM: Patatin; KEGG: bam:Bamb_5833 patatin; patatin complement(116773..117822) Burkholderia ambifaria MC40-6 6182699 YP_001815613.1 CDS BamMC406_5617 NC_010557.1 117899 121354 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_5834 adenylate/guanylate cyclase; TPR repeat-containing adenylate/guanylate cyclase complement(117899..121354) Burkholderia ambifaria MC40-6 6182700 YP_001815614.1 CDS BamMC406_5618 NC_010557.1 121443 122198 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bam:Bamb_5835 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor complement(121443..122198) Burkholderia ambifaria MC40-6 6182701 YP_001815615.1 CDS BamMC406_5619 NC_010557.1 122253 123746 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: bam:Bamb_5836 phenylalanine/histidine ammonia-lyase; phenylalanine/histidine ammonia-lyase complement(122253..123746) Burkholderia ambifaria MC40-6 6182702 YP_001815616.1 CDS BamMC406_5620 NC_010557.1 123754 124545 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_5837 ABC transporter related; ABC transporter complement(123754..124545) Burkholderia ambifaria MC40-6 6182703 YP_001815617.1 CDS BamMC406_5621 NC_010557.1 124574 125320 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_5838 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(124574..125320) Burkholderia ambifaria MC40-6 6182704 YP_001815618.1 CDS BamMC406_5622 NC_010557.1 125333 126055 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_5839 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(125333..126055) Burkholderia ambifaria MC40-6 6182705 YP_001815619.1 CDS BamMC406_5623 NC_010557.1 126148 127008 R PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_5840 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(126148..127008) Burkholderia ambifaria MC40-6 6182706 YP_001815620.1 CDS BamMC406_5624 NC_010557.1 127371 127829 R TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: bam:Bamb_5841 pseudoazurin; pseudoazurin complement(127371..127829) Burkholderia ambifaria MC40-6 6182707 YP_001815621.1 CDS BamMC406_5625 NC_010557.1 127887 130112 R TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: bam:Bamb_5842 catalase/peroxidase HPI; catalase/peroxidase HPI complement(127887..130112) Burkholderia ambifaria MC40-6 6182708 YP_001815622.1 CDS BamMC406_5626 NC_010557.1 130389 131588 R KEGG: bam:Bamb_5843 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(130389..131588) Burkholderia ambifaria MC40-6 6182709 YP_001815623.1 CDS BamMC406_5627 NC_010557.1 131668 133002 R KEGG: bam:Bamb_5844 hypothetical protein; hypothetical protein complement(131668..133002) Burkholderia ambifaria MC40-6 6182710 YP_001815624.1 CDS BamMC406_5628 NC_010557.1 133051 134568 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_5845 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase complement(133051..134568) Burkholderia ambifaria MC40-6 6182711 YP_001815625.1 CDS BamMC406_5629 NC_010557.1 134623 135495 R PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bam:Bamb_5846 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(134623..135495) Burkholderia ambifaria MC40-6 6182712 YP_001815626.1 CDS BamMC406_5630 NC_010557.1 135639 136547 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5847 transcriptional regulator, LysR family; LysR family transcriptional regulator 135639..136547 Burkholderia ambifaria MC40-6 6182445 YP_001815627.1 CDS BamMC406_5631 NC_010557.1 136711 137100 R KEGG: bam:Bamb_5848 hypothetical protein; hypothetical protein complement(136711..137100) Burkholderia ambifaria MC40-6 6182446 YP_001815628.1 CDS BamMC406_5632 NC_010557.1 137168 137974 R TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: bam:Bamb_5849 type III secretion protein SpaR/YscT/HrcT; type III secretion protein SpaR/YscT/HrcT complement(137168..137974) Burkholderia ambifaria MC40-6 6182447 YP_001815629.1 CDS BamMC406_5633 NC_010557.1 138026 138511 R KEGG: bam:Bamb_5850 putative type III secretory pathway protein; putative type III secretory pathway protein complement(138026..138511) Burkholderia ambifaria MC40-6 6182448 YP_001815630.1 CDS BamMC406_5634 NC_010557.1 138527 139918 R KEGG: bam:Bamb_5851 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; type III secretion system ATPase complement(138527..139918) Burkholderia ambifaria MC40-6 6182449 YP_001815631.1 CDS BamMC406_5635 NC_010557.1 139969 140976 R TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: flagellar assembly protein FliH; KEGG: bam:Bamb_5852 type III secretion apparatus protein, HrpE/YscL family; HrpE/YscL family type III secretion apparatus protein complement(139969..140976) Burkholderia ambifaria MC40-6 6182450 YP_001815632.1 CDS BamMC406_5636 NC_010557.1 140970 141728 R KEGG: bam:Bamb_5853 hypothetical protein; hypothetical protein complement(140970..141728) Burkholderia ambifaria MC40-6 6182451 YP_001815633.1 CDS BamMC406_5637 NC_010557.1 141781 142575 R TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: bam:Bamb_5854 type III secretion apparatus lipoprotein, YscJ/HrcJ family; YscJ/HrcJ family type III secretion apparatus lipoprotein complement(141781..142575) Burkholderia ambifaria MC40-6 6182452 YP_001815634.1 CDS BamMC406_5638 NC_010557.1 142969 143367 R KEGG: bam:Bamb_5855 hrpB2; type III secretion protein HrpB2; hrpB2; type III secretion protein HrpB2 complement(142969..143367) Burkholderia ambifaria MC40-6 6182453 YP_001815635.1 CDS BamMC406_5639 NC_010557.1 143396 143965 R KEGG: bam:Bamb_5856 hypothetical protein; hypothetical protein complement(143396..143965) Burkholderia ambifaria MC40-6 6182454 YP_001815636.1 CDS BamMC406_5640 NC_010557.1 144358 145416 D PFAM: type III secretion exporter; KEGG: bam:Bamb_5857 type III secretion system protein; type III secretion system protein HrcU 144358..145416 Burkholderia ambifaria MC40-6 6182455 YP_001815637.1 CDS BamMC406_5641 NC_010557.1 145422 147398 D TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: bam:Bamb_5858 type III secretion protein, HrcV family; HrcV family type III secretion protein 145422..147398 Burkholderia ambifaria MC40-6 6182456 YP_001815638.1 CDS BamMC406_5642 NC_010557.1 147415 148368 D KEGG: bam:Bamb_5859 hypothetical protein; hypothetical protein 147415..148368 Burkholderia ambifaria MC40-6 6182457 YP_001815639.1 CDS BamMC406_5643 NC_010557.1 148376 149500 D TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: bam:Bamb_5860 type III secretion system apparatus protein YscQ/HrcQ; type III secretion system apparatus protein YscQ/HrcQ 148376..149500 Burkholderia ambifaria MC40-6 6182458 YP_001815640.1 CDS BamMC406_5644 NC_010557.1 149487 150143 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 149487..150143 Burkholderia ambifaria MC40-6 6182459 YP_001815641.1 CDS BamMC406_5645 NC_010557.1 150154 150417 D TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: bam:Bamb_5862 type III secretion protein, HrpO family; HrpO family type III secretion protein 150154..150417 Burkholderia ambifaria MC40-6 6182460 YP_001815642.1 CDS BamMC406_5646 NC_010557.1 150414 151640 D KEGG: bam:Bamb_5863 hypothetical protein; hypothetical protein 150414..151640 Burkholderia ambifaria MC40-6 6182461 YP_001815643.1 CDS BamMC406_5647 NC_010557.1 151728 152813 D KEGG: bam:Bamb_5864 SctD; secretion-associated protein; SctD; secretion-associated protein 151728..152813 Burkholderia ambifaria MC40-6 6182462 YP_001815644.1 CDS BamMC406_5648 NC_010557.1 152837 153097 D KEGG: bam:Bamb_5865 putative type III secretion protein; putative type III secretion protein 152837..153097 Burkholderia ambifaria MC40-6 6182463 YP_001815645.1 CDS BamMC406_5649 NC_010557.1 153271 153480 D KEGG: bam:Bamb_5866 hypothetical protein; hypothetical protein 153271..153480 Burkholderia ambifaria MC40-6 6182464 YP_001815646.1 CDS BamMC406_5650 NC_010557.1 153602 154057 D KEGG: bam:Bamb_5867 hypothetical protein; hypothetical protein 153602..154057 Burkholderia ambifaria MC40-6 6182465 YP_001815647.1 CDS BamMC406_5651 NC_010557.1 154193 155533 R PFAM: NolW domain protein; KEGG: bam:Bamb_5868 type II/III secretion system family protein; NolW domain-containing protein complement(154193..155533) Burkholderia ambifaria MC40-6 6182466 YP_001815648.1 CDS BamMC406_5652 NC_010557.1 155617 156417 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_5869 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(155617..156417) Burkholderia ambifaria MC40-6 6182107 YP_001815649.1 CDS BamMC406_5653 NC_010557.1 156506 157714 R PFAM: ATP-binding region ATPase domain protein; KEGG: bam:Bamb_5870 PAS/PAC sensor signal transduction histidine kinase; histidine kinase complement(156506..157714) Burkholderia ambifaria MC40-6 6182108 YP_001815650.1 CDS BamMC406_5654 NC_010557.1 157755 159524 R TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: bam:Bamb_5871 type III secretion outer membrane pore, YscC/HrcC family; YscC/HrcC family type III secretion outer membrane protein complement(157755..159524) Burkholderia ambifaria MC40-6 6182109 YP_001815651.1 CDS BamMC406_5655 NC_010557.1 159634 160734 D PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: bam:Bamb_5872 type II secretion system protein E; type II secretion system protein E 159634..160734 Burkholderia ambifaria MC40-6 6182110 YP_001815652.1 CDS BamMC406_5656 NC_010557.1 160841 162538 R KEGG: bam:Bamb_5873 type IV prepilin; type IV prepilin complement(160841..162538) Burkholderia ambifaria MC40-6 6182111 YP_001815653.1 CDS BamMC406_5657 NC_010557.1 162531 163010 R KEGG: bam:Bamb_5874 PilM; PilM; protein PilM complement(162531..163010) Burkholderia ambifaria MC40-6 6182112 YP_001815654.1 CDS BamMC406_5658 NC_010557.1 163063 163617 R PFAM: PilS domain protein; KEGG: bam:Bamb_5875 putative type IV pilus biogenesis protein; PilS domain-containing protein complement(163063..163617) Burkholderia ambifaria MC40-6 6182113 YP_001815655.1 CDS BamMC406_5659 NC_010557.1 163732 164808 R PFAM: type II secretion system protein; KEGG: bam:Bamb_5876 type II secretion system protein; type II secretion system protein complement(163732..164808) Burkholderia ambifaria MC40-6 6182114 YP_001815656.1 CDS BamMC406_5660 NC_010557.1 164798 166582 R PFAM: type II secretion system protein E; KEGG: bam:Bamb_5877 type II secretion system protein E; type II secretion system protein E complement(164798..166582) Burkholderia ambifaria MC40-6 6182115 YP_001815657.1 CDS BamMC406_5661 NC_010557.1 166587 167177 R KEGG: bam:Bamb_5878 hypothetical protein; hypothetical protein complement(166587..167177) Burkholderia ambifaria MC40-6 6182116 YP_001815658.1 CDS BamMC406_5662 NC_010557.1 167167 168483 R KEGG: bam:Bamb_5879 PilO; putative type IV pilus biosynthesis protein; PilO; putative type IV pilus biosynthesis protein complement(167167..168483) Burkholderia ambifaria MC40-6 6182117 YP_001815659.1 CDS BamMC406_5663 NC_010557.1 168509 170242 R TIGRFAM: type IVB pilus formation outer membrane protein, R64 PilN family; PFAM: type II and III secretion system protein; Secretin domain protein; KEGG: bam:Bamb_5880 type IVB pilus formation outer membrane protein, R64 PilN family; type IVB pilus formation outer membrane protein complement(168509..170242) Burkholderia ambifaria MC40-6 6182118 YP_001815660.1 CDS BamMC406_5664 NC_010557.1 170242 171402 R KEGG: bam:Bamb_5881 hypothetical protein; hypothetical protein complement(170242..171402) Burkholderia ambifaria MC40-6 6182119 YP_001815661.1 CDS BamMC406_5665 NC_010557.1 172202 173635 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5882 transcriptional regulator, AraC family; AraC family transcriptional regulator 172202..173635 Burkholderia ambifaria MC40-6 6182120 YP_001815662.1 CDS BamMC406_5666 NC_010557.1 173810 174277 D PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_5883 lytic transglycosylase, catalytic; lytic transglycosylase 173810..174277 Burkholderia ambifaria MC40-6 6182121 YP_001815663.1 CDS BamMC406_5667 NC_010557.1 174498 175031 R KEGG: bam:Bamb_5884 hypothetical protein; hypothetical protein complement(174498..175031) Burkholderia ambifaria MC40-6 6182122 YP_001815664.1 CDS BamMC406_5668 NC_010557.1 175595 177769 D KEGG: bam:Bamb_5885 hypothetical protein; hypothetical protein 175595..177769 Burkholderia ambifaria MC40-6 6182123 YP_001815665.1 CDS BamMC406_5669 NC_010557.1 178030 178845 D KEGG: bam:Bamb_5886 hypothetical protein; hypothetical protein 178030..178845 Burkholderia ambifaria MC40-6 6182124 YP_001815666.1 CDS BamMC406_5670 NC_010557.1 179252 179611 R KEGG: bam:Bamb_5888 hypothetical protein; hypothetical protein complement(179252..179611) Burkholderia ambifaria MC40-6 6182125 YP_001815667.1 CDS BamMC406_5671 NC_010557.1 179631 179936 R KEGG: bam:Bamb_5889 hypothetical protein; hypothetical protein complement(179631..179936) Burkholderia ambifaria MC40-6 6182126 YP_001815668.1 CDS BamMC406_5672 NC_010557.1 180170 181930 D KEGG: bam:Bamb_5890 hypothetical protein; hypothetical protein 180170..181930 Burkholderia ambifaria MC40-6 6182127 YP_001815669.1 CDS BamMC406_5673 NC_010557.1 182099 182953 D PFAM: formyl transferase domain protein; KEGG: bam:Bamb_5891 formyl transferase domain protein; formyl transferase domain-containing protein 182099..182953 Burkholderia ambifaria MC40-6 6182128 YP_001815670.1 CDS BamMC406_5674 NC_010557.1 183120 184250 R KEGG: bam:Bamb_5892 hypothetical protein; hypothetical protein complement(183120..184250) Burkholderia ambifaria MC40-6 6182129 YP_001815671.1 CDS BamMC406_5675 NC_010557.1 184403 184891 R KEGG: bam:Bamb_5893 hypothetical protein; hypothetical protein complement(184403..184891) Burkholderia ambifaria MC40-6 6182085 YP_001815672.1 CDS BamMC406_5676 NC_010557.1 185550 186521 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_5899 ferredoxin; ferredoxin complement(185550..186521) Burkholderia ambifaria MC40-6 6182086 YP_001815673.1 CDS BamMC406_5677 NC_010557.1 186544 187941 R PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: bam:Bamb_5900 sodium/sulphate symporter; sodium/sulfate symporter complement(186544..187941) Burkholderia ambifaria MC40-6 6182087 YP_001815674.1 CDS BamMC406_5678 NC_010557.1 187938 189164 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_5901 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(187938..189164) Burkholderia ambifaria MC40-6 6182088 YP_001815675.1 CDS BamMC406_5679 NC_010557.1 189438 189998 D KEGG: bam:Bamb_5902 Rossmann fold nucleotide-binding protein-like protein; Rossmann fold nucleotide-binding protein-like protein 189438..189998 Burkholderia ambifaria MC40-6 6182089 YP_001815676.1 CDS BamMC406_5680 NC_010557.1 190056 191372 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(190056..191372) Burkholderia ambifaria MC40-6 6182090 YP_001815677.1 CDS BamMC406_5681 NC_010557.1 191372 192349 R TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: bam:Bamb_5904 dihydroorotate dehydrogenase family protein; dihydroorotate dehydrogenase family protein complement(191372..192349) Burkholderia ambifaria MC40-6 6182091 YP_001815678.1 CDS BamMC406_5682 NC_010557.1 192342 193208 R PFAM: Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_5905 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit complement(192342..193208) Burkholderia ambifaria MC40-6 6182092 YP_001815679.1 CDS BamMC406_5683 NC_010557.1 193248 194495 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5906 major facilitator superfamily MFS_1; major facilitator transporter complement(193248..194495) Burkholderia ambifaria MC40-6 6182093 YP_001815680.1 CDS BamMC406_5684 NC_010557.1 194646 194969 R KEGG: bam:Bamb_5907 hypothetical protein; hypothetical protein complement(194646..194969) Burkholderia ambifaria MC40-6 6182094 YP_001815681.1 CDS BamMC406_5685 NC_010557.1 195074 196147 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_5908 porin, gram-negative type; porin complement(195074..196147) Burkholderia ambifaria MC40-6 6182095 YP_001815682.1 CDS BamMC406_5686 NC_010557.1 196480 197394 D PFAM: helix-turn-helix domain protein; KEGG: ppg:PputGB1_1773 transcriptional regulator, XRE family; XRE family transcriptional regulator 196480..197394 Burkholderia ambifaria MC40-6 6182096 YP_001815683.1 CDS BamMC406_5687 NC_010557.1 197512 198282 R PFAM: Thioesterase; KEGG: amr:AM1_A0220 thioesterase; thioesterase complement(197512..198282) Burkholderia ambifaria MC40-6 6182097 YP_001815684.1 CDS BamMC406_5688 NC_010557.1 198279 201827 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(198279..201827) Burkholderia ambifaria MC40-6 6182098 YP_001815685.1 CDS BamMC406_5689 NC_010557.1 201824 202666 R PFAM: alpha/beta hydrolase fold; KEGG: rpb:RPB_1208 alpha/beta hydrolase; alpha/beta hydrolase complement(201824..202666) Burkholderia ambifaria MC40-6 6182099 YP_001815686.1 CDS BamMC406_5690 NC_010557.1 202641 204191 R PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_6454 major facilitator superfamily MFS_1; major facilitator transporter complement(202641..204191) Burkholderia ambifaria MC40-6 6182100 YP_001815687.1 CDS BamMC406_5691 NC_010557.1 204225 205037 R KEGG: bam:Bamb_6047 hypothetical protein; hypothetical protein complement(204225..205037) Burkholderia ambifaria MC40-6 6182101 YP_001815688.1 CDS BamMC406_5692 NC_010557.1 205122 205496 R PFAM: protein of unknown function DUF1486; Limonene-12-epoxide hydrolase; KEGG: bvi:Bcep1808_6455 limonene-1,2-epoxide hydrolase; hypothetical protein complement(205122..205496) Burkholderia ambifaria MC40-6 6182102 YP_001815689.1 CDS BamMC406_5693 NC_010557.1 205581 206552 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: bxe:Bxe_A0098 3-oxoacyl-(acyl-carrier protein) synthase; Beta-ketoacyl-acyl-carrier-protein synthase I complement(205581..206552) Burkholderia ambifaria MC40-6 6182103 YP_001815690.1 CDS BamMC406_5694 NC_010557.1 206570 207628 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: mex:Mext_2805 beta-ketoacyl-acyl-carrier-protein synthase I; Beta-ketoacyl-acyl-carrier-protein synthase I complement(206570..207628) Burkholderia ambifaria MC40-6 6182104 YP_001815691.1 CDS BamMC406_5695 NC_010557.1 207629 207859 R KEGG: mex:Mext_2804 hypothetical protein; hypothetical protein complement(207629..207859) Burkholderia ambifaria MC40-6 6182105 YP_001815692.1 CDS BamMC406_5696 NC_010557.1 207846 208541 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCP1.235 hypothetical protein, mmyp; HAD family hydrolase complement(207846..208541) Burkholderia ambifaria MC40-6 6182106 YP_001815693.1 CDS BamMC406_5697 NC_010557.1 208586 209287 R KEGG: sil:SPOA0342 hypothetical protein; hypothetical protein complement(208586..209287) Burkholderia ambifaria MC40-6 6181950 YP_001815694.1 CDS BamMC406_5698 NC_010557.1 209496 211091 D PFAM: monooxygenase FAD-binding; KEGG: xau:Xaut_2227 monooxygenase FAD-binding; monooxygenase FAD-binding 209496..211091 Burkholderia ambifaria MC40-6 6181951 YP_001815695.1 CDS BamMC406_5699 NC_010557.1 211136 211855 R PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: bvi:Bcep1808_6456 autoinducer-binding domain protein; LuxR family transcriptional regulator complement(211136..211855) Burkholderia ambifaria MC40-6 6181952 YP_001815696.1 CDS BamMC406_5700 NC_010557.1 212474 212755 R PFAM: regulatory protein LysR; KEGG: bvi:Bcep1808_6041 DNA-binding transcriptional regulator CynR; LysR family transcriptional regulator complement(212474..212755) Burkholderia ambifaria MC40-6 6181953 YP_001815697.1 CDS BamMC406_5701 NC_010557.1 212908 213567 D PFAM: carbonic anhydrase; KEGG: bam:Bamb_5945 carbonate dehydratase; carbonate dehydratase 212908..213567 Burkholderia ambifaria MC40-6 6181954 YP_001815698.1 CDS BamMC406_5702 NC_010557.1 213629 214099 D catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 213629..214099 Burkholderia ambifaria MC40-6 6181955 YP_001815699.1 CDS BamMC406_5703 NC_010557.1 214245 214724 D PFAM: protein of unknown function DUF1348; KEGG: bam:Bamb_5947 protein of unknown function DUF1348; hypothetical protein 214245..214724 Burkholderia ambifaria MC40-6 6181956 YP_001815700.1 CDS BamMC406_5704 NC_010557.1 214945 215202 D KEGG: bam:Bamb_5948 hypothetical protein; hypothetical protein 214945..215202 Burkholderia ambifaria MC40-6 6181957 YP_001815701.1 CDS BamMC406_5705 NC_010557.1 215435 216322 R controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source; DNA-binding transcriptional regulator CynR complement(215435..216322) Burkholderia ambifaria MC40-6 6181958 YP_001815702.1 CDS BamMC406_5706 NC_010557.1 216747 217493 R hypothetical protein complement(216747..217493) Burkholderia ambifaria MC40-6 6181959 YP_001815703.1 CDS BamMC406_5707 NC_010557.1 217890 218369 R PFAM: protein of unknown function DUF1348; KEGG: bam:Bamb_5951 protein of unknown function DUF1348; hypothetical protein complement(217890..218369) Burkholderia ambifaria MC40-6 6181960 YP_001815704.1 CDS BamMC406_5708 NC_010557.1 218496 218744 R KEGG: bam:Bamb_5952 hypothetical protein; hypothetical protein complement(218496..218744) Burkholderia ambifaria MC40-6 6181961 YP_001815705.1 CDS BamMC406_5709 NC_010557.1 218909 219496 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_5953 transcriptional regulator, TetR family; TetR family transcriptional regulator 218909..219496 Burkholderia ambifaria MC40-6 6181962 YP_001815706.1 CDS BamMC406_5710 NC_010557.1 219942 220253 R KEGG: bvi:Bcep1808_7503 hypothetical protein; hypothetical protein complement(219942..220253) Burkholderia ambifaria MC40-6 6181963 YP_001815707.1 CDS BamMC406_5712 NC_010557.1 221381 222415 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bam:Bamb_5954 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(221381..222415) Burkholderia ambifaria MC40-6 6182421 YP_001815708.1 CDS BamMC406_5713 NC_010557.1 222483 222908 R PFAM: OsmC family protein; KEGG: bvi:Bcep1808_6607 OsmC family protein; OsmC family protein complement(222483..222908) Burkholderia ambifaria MC40-6 6181965 YP_001815709.1 CDS BamMC406_5714 NC_010557.1 223133 223699 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_5956 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(223133..223699) Burkholderia ambifaria MC40-6 6181966 YP_001815710.1 CDS BamMC406_5715 NC_010557.1 223985 224500 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: bam:Bamb_5959 methionine-R-sulfoxide reductase; methionine-R-sulfoxide reductase 223985..224500 Burkholderia ambifaria MC40-6 6181967 YP_001815711.1 CDS BamMC406_5716 NC_010557.1 224536 226404 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: bam:Bamb_5960 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein transmembrane region 224536..226404 Burkholderia ambifaria MC40-6 6181968 YP_001815712.1 CDS BamMC406_5717 NC_010557.1 226457 227197 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 226457..227197 Burkholderia ambifaria MC40-6 6181969 YP_001815713.1 CDS BamMC406_5718 NC_010557.1 227395 228516 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_5962 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 227395..228516 Burkholderia ambifaria MC40-6 6181970 YP_001815714.1 CDS BamMC406_5719 NC_010557.1 228578 230035 R catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase complement(228578..230035) Burkholderia ambifaria MC40-6 6181971 YP_001815715.1 CDS BamMC406_5720 NC_010557.1 230082 231590 R TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bam:Bamb_5964 NCS1 nucleoside transporter family; NCS1 nucleoside transporter complement(230082..231590) Burkholderia ambifaria MC40-6 6181972 YP_001815716.1 CDS BamMC406_5721 NC_010557.1 231690 232997 R catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase complement(231690..232997) Burkholderia ambifaria MC40-6 6181905 YP_001815717.1 CDS BamMC406_5722 NC_010557.1 233070 234407 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase complement(233070..234407) Burkholderia ambifaria MC40-6 6181906 YP_001815718.1 CDS BamMC406_5723 NC_010557.1 234537 235817 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(234537..235817) Burkholderia ambifaria MC40-6 6181907 YP_001815719.1 CDS BamMC406_5724 NC_010557.1 236180 236872 D PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: bam:Bamb_5968 transcriptional regulator, TetR family; TetR family transcriptional regulator 236180..236872 Burkholderia ambifaria MC40-6 6181908 YP_001815720.1 CDS BamMC406_5725 NC_010557.1 236984 238174 R KEGG: bam:Bamb_5969 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(236984..238174) Burkholderia ambifaria MC40-6 6181909 YP_001815721.1 CDS BamMC406_5726 NC_010557.1 238205 238972 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5970 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(238205..238972) Burkholderia ambifaria MC40-6 6181910 YP_001815722.1 CDS BamMC406_5727 NC_010557.1 238993 240666 R PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_5971 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(238993..240666) Burkholderia ambifaria MC40-6 6181911 YP_001815723.1 CDS BamMC406_5728 NC_010557.1 240803 241807 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5972 transcriptional regulator, AraC family; AraC family transcriptional regulator 240803..241807 Burkholderia ambifaria MC40-6 6181912 YP_001815724.1 CDS BamMC406_5729 NC_010557.1 241975 242346 D KEGG: bam:Bamb_5974 hypothetical protein; hypothetical protein 241975..242346 Burkholderia ambifaria MC40-6 6181913 YP_001815725.1 CDS BamMC406_5730 NC_010557.1 248535 248900 D KEGG: bam:Bamb_5975 hypothetical protein; hypothetical protein 248535..248900 Burkholderia ambifaria MC40-6 6182388 YP_001815726.1 CDS BamMC406_5731 NC_010557.1 249067 249750 R KEGG: bam:Bamb_5976 hypothetical protein; hypothetical protein complement(249067..249750) Burkholderia ambifaria MC40-6 6181915 YP_001815727.1 CDS BamMC406_5732 NC_010557.1 249760 250284 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bam:Bamb_5977 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(249760..250284) Burkholderia ambifaria MC40-6 6181916 YP_001815728.1 CDS BamMC406_5733 NC_010557.1 250406 253876 R KEGG: bam:Bamb_5978 hypothetical protein; hypothetical protein complement(250406..253876) Burkholderia ambifaria MC40-6 6181917 YP_001815729.1 CDS BamMC406_5734 NC_010557.1 253880 255130 R PFAM: metallophosphoesterase; KEGG: bam:Bamb_5979 metallophosphoesterase; metallophosphoesterase complement(253880..255130) Burkholderia ambifaria MC40-6 6181918 YP_001815730.1 CDS BamMC406_5735 NC_010557.1 255653 256204 R KEGG: bam:Bamb_5980 late embryogenesis abundant protein; late embryogenesis abundant protein complement(255653..256204) Burkholderia ambifaria MC40-6 6181919 YP_001815731.1 CDS BamMC406_5736 NC_010557.1 256451 256873 R KEGG: bam:Bamb_5981 hypothetical protein; hypothetical protein complement(256451..256873) Burkholderia ambifaria MC40-6 6181920 YP_001815732.1 CDS BamMC406_5737 NC_010557.1 256968 258956 R PFAM: gamma-glutamyltranspeptidase; KEGG: bam:Bamb_5982 gamma-glutamyltransferase; gamma-glutamyltransferase complement(256968..258956) Burkholderia ambifaria MC40-6 6181921 YP_001815733.1 CDS BamMC406_5738 NC_010557.1 259285 259560 R hypothetical protein complement(259285..259560) Burkholderia ambifaria MC40-6 6181922 YP_001815734.1 CDS BamMC406_5739 NC_010557.1 259557 259838 R KEGG: bam:Bamb_5983 hypothetical protein; hypothetical protein complement(259557..259838) Burkholderia ambifaria MC40-6 6181923 YP_001815735.1 CDS BamMC406_5740 NC_010557.1 260107 263337 D PFAM: acriflavin resistance protein; KEGG: bam:Bamb_5984 acriflavin resistance protein; acriflavin resistance protein 260107..263337 Burkholderia ambifaria MC40-6 6181924 YP_001815736.1 CDS BamMC406_5741 NC_010557.1 263387 264754 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_5985 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 263387..264754 Burkholderia ambifaria MC40-6 6181925 YP_001815737.1 CDS BamMC406_5742 NC_010557.1 264785 266278 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_5986 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 264785..266278 Burkholderia ambifaria MC40-6 6181926 YP_001815738.1 CDS BamMC406_5743 NC_010557.1 266259 267740 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5987 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase complement(266259..267740) Burkholderia ambifaria MC40-6 6181860 YP_001815739.1 CDS BamMC406_5744 NC_010557.1 267737 268414 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_5988 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator complement(267737..268414) Burkholderia ambifaria MC40-6 6181861 YP_001815740.1 CDS BamMC406_5745 NC_010557.1 268757 269236 R PFAM: RES domain protein; KEGG: bam:Bamb_5989 hypothetical protein; RES domain-containing protein complement(268757..269236) Burkholderia ambifaria MC40-6 6181862 YP_001815741.1 CDS BamMC406_5746 NC_010557.1 269233 269688 R PFAM: conserved hypothetical protein; KEGG: bam:Bamb_5990 hypothetical protein; hypothetical protein complement(269233..269688) Burkholderia ambifaria MC40-6 6181863 YP_001815742.1 CDS BamMC406_5747 NC_010557.1 270015 270656 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bam:Bamb_5991 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(270015..270656) Burkholderia ambifaria MC40-6 6181864 YP_001815743.1 CDS BamMC406_5748 NC_010557.1 270883 271848 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_5992 transcriptional regulator, AraC family; AraC family transcriptional regulator 270883..271848 Burkholderia ambifaria MC40-6 6181865 YP_001815744.1 CDS BamMC406_5749 NC_010557.1 272262 272573 D KEGG: bam:Bamb_5993 hypothetical protein; hypothetical protein 272262..272573 Burkholderia ambifaria MC40-6 6181866 YP_001815745.1 CDS BamMC406_5750 NC_010557.1 272886 273599 D PFAM: dienelactone hydrolase; KEGG: bam:Bamb_5994 carboxymethylenebutenolidase; carboxymethylenebutenolidase 272886..273599 Burkholderia ambifaria MC40-6 6181867 YP_001815746.1 CDS BamMC406_5751 NC_010557.1 273706 274677 R TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_5995 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; aliphatic sulfonate ABC transporter substrate-binding protein complement(273706..274677) Burkholderia ambifaria MC40-6 6181868 YP_001815747.1 CDS BamMC406_5752 NC_010557.1 274945 275886 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5996 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(274945..275886) Burkholderia ambifaria MC40-6 6181869 YP_001815748.1 CDS BamMC406_5753 NC_010557.1 276123 277412 R PFAM: adenylosuccinate synthetase; KEGG: bam:Bamb_5997 adenylosuccinate synthase; adenylosuccinate synthase complement(276123..277412) Burkholderia ambifaria MC40-6 6181870 YP_001815749.1 CDS BamMC406_5754 NC_010557.1 277553 278455 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5998 transcriptional regulator, LysR family; LysR family transcriptional regulator 277553..278455 Burkholderia ambifaria MC40-6 6181871 YP_001815750.1 CDS BamMC406_5755 NC_010557.1 278672 278992 R KEGG: bam:Bamb_5999 hypothetical protein; hypothetical protein complement(278672..278992) Burkholderia ambifaria MC40-6 6181872 YP_001815751.1 CDS BamMC406_5756 NC_010557.1 281473 282789 D KEGG: bam:Bamb_6000 hypothetical protein; hypothetical protein 281473..282789 Burkholderia ambifaria MC40-6 6181873 YP_001815752.1 CDS BamMC406_5757 NC_010557.1 282881 283912 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: bam:Bamb_6001 ParB-like partition proteins; parB-like partition protein complement(282881..283912) Burkholderia ambifaria MC40-6 6181874 YP_001815753.1 CDS BamMC406_5758 NC_010557.1 283905 284600 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bam:Bamb_6002 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(283905..284600) Burkholderia ambifaria MC40-6 6181875 YP_001815754.1 CDS BamMC406_5759 NC_010557.1 286516 287640 R KEGG: bam:Bamb_6004 Zn-dependent hydrolase of the beta-lactamase fold-like protein; Zn-dependent hydrolase of the beta-lactamase fold-like protein complement(286516..287640) Burkholderia ambifaria MC40-6 6181876 YP_001815755.1 CDS BamMC406_5760 NC_010557.1 287751 288377 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_6005 transcriptional regulator, TetR family; TetR family transcriptional regulator 287751..288377 Burkholderia ambifaria MC40-6 6181877 YP_001815756.1 CDS BamMC406_5761 NC_010557.1 288632 289123 D PFAM: flavodoxin/nitric oxide synthase; KEGG: bam:Bamb_6006 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 288632..289123 Burkholderia ambifaria MC40-6 6181878 YP_001815757.1 CDS BamMC406_5762 NC_010557.1 289301 289885 R KEGG: bam:Bamb_6007 hypothetical protein; hypothetical protein complement(289301..289885) Burkholderia ambifaria MC40-6 6181879 YP_001815758.1 CDS BamMC406_5763 NC_010557.1 290000 290170 R hypothetical protein complement(290000..290170) Burkholderia ambifaria MC40-6 6181880 YP_001815759.1 CDS BamMC406_5764 NC_010557.1 290542 291216 D PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: bam:Bamb_6008 ProQ activator of osmoprotectant transporter ProP; ProQ activator of osmoprotectant transporter ProP 290542..291216 Burkholderia ambifaria MC40-6 6181881 YP_001815760.1 CDS BamMC406_5765 NC_010557.1 291902 292963 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_6009 protein of unknown function DUF6, transmembrane; hypothetical protein 291902..292963 Burkholderia ambifaria MC40-6 6181882 YP_001815761.1 CDS BamMC406_5766 NC_010557.1 293053 293418 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_6010 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(293053..293418) Burkholderia ambifaria MC40-6 6182511 YP_001815762.1 CDS BamMC406_5767 NC_010557.1 293590 294015 R PFAM: TOBE domain protein; KEGG: bam:Bamb_6011 molybdenum-pterin binding; TOBE domain-containing protein complement(293590..294015) Burkholderia ambifaria MC40-6 6182512 YP_001815763.1 CDS BamMC406_5768 NC_010557.1 294197 295696 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_6012 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(294197..295696) Burkholderia ambifaria MC40-6 6182513 YP_001815764.1 CDS BamMC406_5769 NC_010557.1 295693 296661 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_6013 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(295693..296661) Burkholderia ambifaria MC40-6 6182514 YP_001815765.1 CDS BamMC406_5770 NC_010557.1 296664 296876 R PFAM: protein of unknown function DUF1656; KEGG: bam:Bamb_6014 protein of unknown function DUF1656; hypothetical protein complement(296664..296876) Burkholderia ambifaria MC40-6 6182515 YP_001815766.1 CDS BamMC406_5771 NC_010557.1 296911 299070 R PFAM: Fusaric acid resistance protein conserved region; KEGG: bam:Bamb_6015 fusaric acid resistance protein conserved region; fusaric acid resistance protein region complement(296911..299070) Burkholderia ambifaria MC40-6 6182516 YP_001815767.1 CDS BamMC406_5772 NC_010557.1 299067 299546 R PFAM: regulatory protein MarR; KEGG: bam:Bamb_6016 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(299067..299546) Burkholderia ambifaria MC40-6 6182517 YP_001815768.1 CDS BamMC406_5773 NC_010557.1 299955 301367 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_6017 transcriptional regulator, GntR family; transcriptional regulator 299955..301367 Burkholderia ambifaria MC40-6 6182518 YP_001815769.1 CDS eutB NC_010557.1 301473 302444 D catalyzes the formation of 2-oxobutanoate from L-threonine; involved in ectoine utilization; threonine dehydratase 301473..302444 Burkholderia ambifaria MC40-6 6182519 YP_001815770.1 CDS BamMC406_5775 NC_010557.1 302446 303450 D putative cyclodeaminase; ectoine utilization protein EutC 302446..303450 Burkholderia ambifaria MC40-6 6182520 YP_001815771.1 CDS BamMC406_5776 NC_010557.1 303461 304669 D TIGRFAM: ectoine utilization protein EutD; PFAM: creatinase; peptidase M24; KEGG: bam:Bamb_6020 peptidase M24; ectoine utilization protein EutD 303461..304669 Burkholderia ambifaria MC40-6 6182521 YP_001815772.1 CDS BamMC406_5777 NC_010557.1 304674 305699 D TIGRFAM: ectoine utilization protein EutE; PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bam:Bamb_6021 succinylglutamate desuccinylase/aspartoacylase; ectoine utilization protein EutE 304674..305699 Burkholderia ambifaria MC40-6 6182522 YP_001815773.1 CDS BamMC406_5778 NC_010557.1 305713 306183 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_6022 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 305713..306183 Burkholderia ambifaria MC40-6 6182523 YP_001815774.1 CDS BamMC406_5779 NC_010557.1 306307 307785 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_6023 succinate-semialdehyde dehydrogenase (NAD(P)(+)); aldehyde dehydrogenase 306307..307785 Burkholderia ambifaria MC40-6 6182524 YP_001815775.1 CDS BamMC406_5780 NC_010557.1 307806 309200 D PFAM: aminotransferase class-III; KEGG: bam:Bamb_6024 hypothetical protein; hypothetical protein 307806..309200 Burkholderia ambifaria MC40-6 6182525 YP_001815776.1 CDS BamMC406_5781 NC_010557.1 309326 310258 R PFAM: beta-lactamase domain protein; KEGG: bam:Bamb_6025 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(309326..310258) Burkholderia ambifaria MC40-6 6182526 YP_001815777.1 CDS BamMC406_5782 NC_010557.1 310482 312134 R PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_6026 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(310482..312134) Burkholderia ambifaria MC40-6 6182527 YP_001815778.1 CDS BamMC406_5783 NC_010557.1 312149 312913 R PFAM: nitroreductase; KEGG: bam:Bamb_6027 nitroreductase; nitroreductase complement(312149..312913) Burkholderia ambifaria MC40-6 6182528 YP_001815779.1 CDS BamMC406_5784 NC_010557.1 312994 314352 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6028 major facilitator superfamily MFS_1; major facilitator transporter complement(312994..314352) Burkholderia ambifaria MC40-6 6182529 YP_001815780.1 CDS BamMC406_5785 NC_010557.1 314690 315940 D PFAM: transposase mutator type; KEGG: bch:Bcen2424_3752 transposase, mutator type; transposase mutator type 314690..315940 Burkholderia ambifaria MC40-6 6182530 YP_001815781.1 CDS BamMC406_5786 NC_010557.1 316091 317779 R PFAM: Tannase and feruloyl esterase; KEGG: bam:Bamb_6029 tannase and feruloyl esterase; tannase and feruloyl esterase complement(316091..317779) Burkholderia ambifaria MC40-6 6182531 YP_001815782.1 CDS BamMC406_5787 NC_010557.1 318272 319288 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_6030 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(318272..319288) Burkholderia ambifaria MC40-6 6182532 YP_001815783.1 CDS BamMC406_5788 NC_010557.1 319552 320937 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6031 general substrate transporter; general substrate transporter complement(319552..320937) Burkholderia ambifaria MC40-6 6182039 YP_001815784.1 CDS BamMC406_5789 NC_010557.1 321153 321935 R PFAM: Dak phosphatase; KEGG: bam:Bamb_6032 glycerone kinase; Dak phosphatase complement(321153..321935) Burkholderia ambifaria MC40-6 6182040 YP_001815785.1 CDS BamMC406_5791 NC_010557.1 322419 322919 D PFAM: Integrase catalytic region; KEGG: rme:Rmet_5497 integrase, catalytic region; integrase catalytic region 322419..322919 Burkholderia ambifaria MC40-6 6182389 YP_001815786.1 CDS BamMC406_5792 NC_010557.1 323349 324920 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: reh:H16_A2758 altronate dehydratase; altronate dehydratase complement(323349..324920) Burkholderia ambifaria MC40-6 6182042 YP_001815787.1 CDS BamMC406_5793 NC_010557.1 325022 325717 R KEGG: atc:AGR_L_563 hypothetical protein; hypothetical protein complement(325022..325717) Burkholderia ambifaria MC40-6 6182043 YP_001815788.1 CDS BamMC406_5794 NC_010557.1 325745 326638 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bam:Bamb_4450 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(325745..326638) Burkholderia ambifaria MC40-6 6182044 YP_001815789.1 CDS BamMC406_5795 NC_010557.1 326651 327454 R KEGG: bmu:Bmul_5380 2-keto-4-pentenoate hydratase-like protein; 2-keto-4-pentenoate hydratase complement(326651..327454) Burkholderia ambifaria MC40-6 6182045 YP_001815790.1 CDS BamMC406_5796 NC_010557.1 327457 328194 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: atc:AGR_L_554 hypothetical protein; IclR family transcriptional regulator complement(327457..328194) Burkholderia ambifaria MC40-6 6182046 YP_001815791.1 CDS BamMC406_5797 NC_010557.1 328351 329784 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:bll5462 hypothetical metabolite transport protein; major facilitator transporter 328351..329784 Burkholderia ambifaria MC40-6 6182047 YP_001815792.1 CDS BamMC406_5798 NC_010557.1 329906 330358 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: bur:Bcep18194_B2367 hypothetical protein; cupin 329906..330358 Burkholderia ambifaria MC40-6 6182048 YP_001815793.1 CDS BamMC406_5799 NC_010557.1 330534 331370 D PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: xau:Xaut_1616 shikimate dehydrogenase substrate binding domain protein; shikimate dehydrogenase 330534..331370 Burkholderia ambifaria MC40-6 6182049 YP_001815794.1 CDS BamMC406_5800 NC_010557.1 331496 332512 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcs:BCAN_B0405 hypothetical protein; oxidoreductase domain-containing protein 331496..332512 Burkholderia ambifaria MC40-6 6182050 YP_001815795.1 CDS BamMC406_5801 NC_010557.1 332858 334042 D KEGG: bxe:Bxe_C1358 hypothetical protein; hypothetical protein 332858..334042 Burkholderia ambifaria MC40-6 6182051 YP_001815796.1 CDS BamMC406_5802 NC_010557.1 334076 335518 D PFAM: Aldehyde Dehydrogenase_; KEGG: bxe:Bxe_C1357 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 334076..335518 Burkholderia ambifaria MC40-6 6182052 YP_001815797.1 CDS BamMC406_5803 NC_010557.1 335836 336966 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_6033 sigma54 specific transcriptional regulator, fis family; putative sigma-54 specific transcriptional regulator complement(335836..336966) Burkholderia ambifaria MC40-6 6182053 YP_001815798.1 CDS BamMC406_5804 NC_010557.1 337479 338039 D PFAM: NADPH-dependent FMN reductase; KEGG: bam:Bamb_6034 FMN reductase; FMN reductase 337479..338039 Burkholderia ambifaria MC40-6 6182054 YP_001815799.1 CDS BamMC406_5805 NC_010557.1 338069 339172 D PFAM: Luciferase-like monooxygenase; KEGG: bam:Bamb_6035 luciferase family protein; luciferase-like monooxygenase 338069..339172 Burkholderia ambifaria MC40-6 6182055 YP_001815800.1 CDS BamMC406_5806 NC_010557.1 339335 339982 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_6036 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(339335..339982) Burkholderia ambifaria MC40-6 6182056 YP_001815801.1 CDS BamMC406_5807 NC_010557.1 340094 340945 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6037 transcriptional regulator, LysR family; LysR family transcriptional regulator 340094..340945 Burkholderia ambifaria MC40-6 6182057 YP_001815802.1 CDS BamMC406_5808 NC_010557.1 340970 341860 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6038 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(340970..341860) Burkholderia ambifaria MC40-6 6182058 YP_001815803.1 CDS BamMC406_5809 NC_010557.1 342014 345067 D PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_6039 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 342014..345067 Burkholderia ambifaria MC40-6 6182059 YP_001815804.1 CDS BamMC406_5810 NC_010557.1 345284 345970 R PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; Bacterio-opsin activator HTH domain protein; KEGG: bam:Bamb_6040 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(345284..345970) Burkholderia ambifaria MC40-6 6182060 YP_001815805.1 CDS BamMC406_5811 NC_010557.1 346554 347153 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_6041 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(346554..347153) Burkholderia ambifaria MC40-6 6182061 YP_001815806.1 CDS BamMC406_5812 NC_010557.1 347373 348215 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6042 transcriptional regulator, LysR family; LysR family transcriptional regulator 347373..348215 Burkholderia ambifaria MC40-6 6182153 YP_001815807.1 CDS BamMC406_5813 NC_010557.1 348433 349677 D PFAM: sodium/hydrogen exchanger; KEGG: bam:Bamb_6043 sodium/hydrogen exchanger; sodium/hydrogen exchanger 348433..349677 Burkholderia ambifaria MC40-6 6182154 YP_001815808.1 CDS BamMC406_5814 NC_010557.1 349746 350948 R PFAM: aminotransferase class I and II; KEGG: bam:Bamb_6044 aminotransferase, class I and II; GntR family transcriptional regulator complement(349746..350948) Burkholderia ambifaria MC40-6 6182155 YP_001815809.1 CDS BamMC406_5815 NC_010557.1 351082 351903 R KEGG: bam:Bamb_6045 hypothetical protein; hypothetical protein complement(351082..351903) Burkholderia ambifaria MC40-6 6182156 YP_001815810.1 CDS BamMC406_5816 NC_010557.1 351928 352977 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bam:Bamb_6046 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(351928..352977) Burkholderia ambifaria MC40-6 6182157 YP_001815811.1 CDS BamMC406_5817 NC_010557.1 352977 353798 R KEGG: bam:Bamb_6047 hypothetical protein; hypothetical protein complement(352977..353798) Burkholderia ambifaria MC40-6 6182158 YP_001815812.1 CDS BamMC406_5818 NC_010557.1 353846 354112 R PFAM: phosphopantetheine-binding; KEGG: bam:Bamb_6048 phosphopantetheine-binding; phosphopantetheine-binding protein complement(353846..354112) Burkholderia ambifaria MC40-6 6182159 YP_001815813.1 CDS BamMC406_5819 NC_010557.1 354185 355111 R TIGRFAM: chlorinating enzyme; PFAM: Phytanoyl-CoA dioxygenase; KEGG: bam:Bamb_6049 chlorinating enzyme; chlorinating enzyme complement(354185..355111) Burkholderia ambifaria MC40-6 6182160 YP_001815814.1 CDS BamMC406_5820 NC_010557.1 355190 355438 R KEGG: bam:Bamb_6050 acyl carrier protein; acyl carrier protein complement(355190..355438) Burkholderia ambifaria MC40-6 6182161 YP_001815815.1 CDS BamMC406_5821 NC_010557.1 355455 356975 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: bam:Bamb_6051 amino acid adenylation domain; amino acid adenylation domain-containing protein complement(355455..356975) Burkholderia ambifaria MC40-6 6182162 YP_001815816.1 CDS BamMC406_5822 NC_010557.1 356972 357832 R KEGG: bam:Bamb_6052 alpha/beta hydrolase fold; alpha/beta hydrolase complement(356972..357832) Burkholderia ambifaria MC40-6 6182163 YP_001815817.1 CDS BamMC406_5823 NC_010557.1 357912 358517 R PFAM: autoinducer synthesis protein; KEGG: bam:Bamb_6053 autoinducer synthesis protein; autoinducer synthesis protein complement(357912..358517) Burkholderia ambifaria MC40-6 6182164 YP_001815818.1 CDS BamMC406_5824 NC_010557.1 358582 359004 R KEGG: bam:Bamb_6054 hypothetical protein; hypothetical protein complement(358582..359004) Burkholderia ambifaria MC40-6 6182165 YP_001815819.1 CDS BamMC406_5825 NC_010557.1 359516 360142 D KEGG: bam:Bamb_6055 hypothetical protein; hypothetical protein 359516..360142 Burkholderia ambifaria MC40-6 6182166 YP_001815820.1 CDS BamMC406_5826 NC_010557.1 360199 361002 D PFAM: Thioesterase; KEGG: bam:Bamb_6056 thioesterase; thioesterase 360199..361002 Burkholderia ambifaria MC40-6 6182167 YP_001815821.1 CDS BamMC406_5827 NC_010557.1 361097 361783 D PFAM: phenylacetic acid catabolic family protein; KEGG: cvi:CV_2659 probable phenylacetic acid degradation protein PaaA; phenylacetic acid catabolic family protein 361097..361783 Burkholderia ambifaria MC40-6 6182168 YP_001815822.1 CDS BamMC406_5828 NC_010557.1 361780 362946 D PFAM: Radical SAM domain protein; KEGG: bmu:Bmul_2872 radical SAM domain protein; radical SAM domain-containing protein 361780..362946 Burkholderia ambifaria MC40-6 6182169 YP_001815823.1 CDS BamMC406_5829 NC_010557.1 362943 363497 D KEGG: mxa:MXAN_1515 thioesterase family protein; hypothetical protein 362943..363497 Burkholderia ambifaria MC40-6 6182170 YP_001815824.1 CDS BamMC406_5830 NC_010557.1 363618 363920 R KEGG: bvi:Bcep1808_6615 hypothetical protein; hypothetical protein complement(363618..363920) Burkholderia ambifaria MC40-6 6182171 YP_001815825.1 CDS BamMC406_5831 NC_010557.1 364008 365162 R PFAM: Extracellular ligand-binding receptor; KEGG: bam:Bamb_6057 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(364008..365162) Burkholderia ambifaria MC40-6 6182172 YP_001815826.1 CDS BamMC406_5832 NC_010557.1 365762 366658 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_6058 protein of unknown function DUF6, transmembrane; hypothetical protein complement(365762..366658) Burkholderia ambifaria MC40-6 6182173 YP_001815827.1 CDS BamMC406_5833 NC_010557.1 366716 367735 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6059 transcriptional regulator, LysR family; LysR family transcriptional regulator 366716..367735 Burkholderia ambifaria MC40-6 6182174 YP_001815828.1 CDS BamMC406_5834 NC_010557.1 367863 368522 D KEGG: bam:Bamb_6060 hypothetical protein; hypothetical protein 367863..368522 Burkholderia ambifaria MC40-6 6182175 YP_001815829.1 CDS BamMC406_5835 NC_010557.1 368560 369027 D KEGG: bam:Bamb_6061 hypothetical protein; hypothetical protein 368560..369027 Burkholderia ambifaria MC40-6 6182645 YP_001815830.1 CDS BamMC406_5836 NC_010557.1 369182 369658 D KEGG: bam:Bamb_6062 hypothetical protein; hypothetical protein 369182..369658 Burkholderia ambifaria MC40-6 6182646 YP_001815831.1 CDS BamMC406_5837 NC_010557.1 369734 370906 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_6063 porin, gram-negative type; porin complement(369734..370906) Burkholderia ambifaria MC40-6 6182647 YP_001815832.1 CDS BamMC406_5838 NC_010557.1 371328 371699 D PFAM: LrgA family protein; KEGG: bam:Bamb_6074 LrgA family protein; LrgA family protein 371328..371699 Burkholderia ambifaria MC40-6 6182648 YP_001815833.1 CDS BamMC406_5839 NC_010557.1 371696 372430 D PFAM: LrgB family protein; KEGG: bam:Bamb_6075 LrgB family protein; LrgB family protein 371696..372430 Burkholderia ambifaria MC40-6 6182649 YP_001815834.1 CDS BamMC406_5840 NC_010557.1 372676 372999 D KEGG: bam:Bamb_6076 hypothetical protein; hypothetical protein 372676..372999 Burkholderia ambifaria MC40-6 6182650 YP_001815835.1 CDS BamMC406_5841 NC_010557.1 373115 373717 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(373115..373717) Burkholderia ambifaria MC40-6 6182651 YP_001815836.1 CDS BamMC406_5842 NC_010557.1 373784 374509 R PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_6078 pirin domain protein domain protein; pirin domain-containing protein complement(373784..374509) Burkholderia ambifaria MC40-6 6182652 YP_001815837.1 CDS BamMC406_5843 NC_010557.1 374637 375521 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6079 transcriptional regulator, LysR family; LysR family transcriptional regulator 374637..375521 Burkholderia ambifaria MC40-6 6182653 YP_001815838.1 CDS BamMC406_5844 NC_010557.1 375689 376714 D KEGG: bam:Bamb_6080 hypothetical protein; hypothetical protein 375689..376714 Burkholderia ambifaria MC40-6 6182654 YP_001815839.1 CDS BamMC406_5845 NC_010557.1 376955 377413 D PFAM: MEKHLA domain protein; KEGG: bam:Bamb_6081 hypothetical protein; MEKHLA domain-containing protein 376955..377413 Burkholderia ambifaria MC40-6 6182655 YP_001815840.1 CDS BamMC406_5846 NC_010557.1 377645 378148 D PFAM: conserved hypothetical protein; KEGG: bvi:Bcep1808_7247 hypothetical protein; hypothetical protein 377645..378148 Burkholderia ambifaria MC40-6 6182656 YP_001815841.1 CDS BamMC406_5847 NC_010557.1 378145 378618 D PFAM: RES domain protein; KEGG: bvi:Bcep1808_7246 hypothetical protein; RES domain-containing protein 378145..378618 Burkholderia ambifaria MC40-6 6182657 YP_001815842.1 CDS BamMC406_5848 NC_010557.1 379004 379417 D PFAM: DoxX family protein; KEGG: bam:Bamb_6086 DoxX family protein; DoxX family protein 379004..379417 Burkholderia ambifaria MC40-6 6182658 YP_001815843.1 CDS BamMC406_5849 NC_010557.1 379579 380523 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bam:Bamb_6087 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 379579..380523 Burkholderia ambifaria MC40-6 6182659 YP_001815844.1 CDS BamMC406_5851 NC_010557.1 381369 381698 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bam:Bamb_6089 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 381369..381698 Burkholderia ambifaria MC40-6 6182390 YP_001815845.1 CDS BamMC406_5854 NC_010557.1 382491 383750 D PFAM: Saccharopine dehydrogenase; KEGG: bam:Bamb_6092 saccharopine dehydrogenase; saccharopine dehydrogenase (NAD(+), L-glutamate-forming) 382491..383750 Burkholderia ambifaria MC40-6 6182392 YP_001815846.1 CDS BamMC406_5855 NC_010557.1 383919 385076 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_6093 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(383919..385076) Burkholderia ambifaria MC40-6 6182662 YP_001815847.1 CDS BamMC406_5856 NC_010557.1 385327 386718 D PFAM: amino acid permease-associated region; KEGG: bam:Bamb_6094 amino acid permease-associated region; amino acid permease 385327..386718 Burkholderia ambifaria MC40-6 6182663 YP_001815848.1 CDS BamMC406_5857 NC_010557.1 386777 388174 D PFAM: aminotransferase class-III; KEGG: bam:Bamb_6095 hypothetical protein; hypothetical protein 386777..388174 Burkholderia ambifaria MC40-6 6182664 YP_001815849.1 CDS BamMC406_5858 NC_010557.1 388210 389634 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_6096 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 388210..389634 Burkholderia ambifaria MC40-6 6182665 YP_001815850.1 CDS BamMC406_5859 NC_010557.1 389688 391190 D PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: bam:Bamb_6097 MlrC domain protein; MlrC domain-containing protein 389688..391190 Burkholderia ambifaria MC40-6 6182666 YP_001815851.1 CDS BamMC406_5860 NC_010557.1 391310 392497 D KEGG: bam:Bamb_6098 hypothetical protein; hypothetical protein 391310..392497 Burkholderia ambifaria MC40-6 6182759 YP_001815852.1 CDS BamMC406_5861 NC_010557.1 392600 392737 R KEGG: bam:Bamb_6099 hypothetical protein; hypothetical protein complement(392600..392737) Burkholderia ambifaria MC40-6 6182760 YP_001815853.1 CDS BamMC406_5862 NC_010557.1 393119 393574 D KEGG: bam:Bamb_6101 hypothetical protein; hypothetical protein 393119..393574 Burkholderia ambifaria MC40-6 6182761 YP_001815854.1 CDS BamMC406_5863 NC_010557.1 393685 394497 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6102 alpha/beta hydrolase fold; alpha/beta hydrolase 393685..394497 Burkholderia ambifaria MC40-6 6182762 YP_001815855.1 CDS ampC NC_010557.1 394683 395852 D PFAM: beta-lactamase; KEGG: bam:Bamb_6103 beta-lactamase; beta-lactamase 394683..395852 Burkholderia ambifaria MC40-6 6182763 YP_001815856.1 CDS BamMC406_5865 NC_010557.1 395877 397913 R KEGG: bam:Bamb_6104 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene-hopene cyclase complement(395877..397913) Burkholderia ambifaria MC40-6 6182764 YP_001815857.1 CDS BamMC406_5866 NC_010557.1 397978 398688 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_6105 transcriptional regulator, TetR family; TetR family transcriptional regulator 397978..398688 Burkholderia ambifaria MC40-6 6182765 YP_001815858.1 CDS BamMC406_5867 NC_010557.1 398941 399195 D KEGG: bam:Bamb_6106 hypothetical protein; hypothetical protein 398941..399195 Burkholderia ambifaria MC40-6 6182766 YP_001815859.1 CDS BamMC406_5868 NC_010557.1 399488 400429 R PFAM: dihydrodipicolinate synthetase; KEGG: bam:Bamb_6107 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(399488..400429) Burkholderia ambifaria MC40-6 6182767 YP_001815860.1 CDS BamMC406_5869 NC_010557.1 401017 402396 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6108 major facilitator superfamily MFS_1; major facilitator transporter 401017..402396 Burkholderia ambifaria MC40-6 6182768 YP_001815861.1 CDS BamMC406_5870 NC_010557.1 402994 403623 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_6109 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(402994..403623) Burkholderia ambifaria MC40-6 6182769 YP_001815862.1 CDS BamMC406_5871 NC_010557.1 403995 405125 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6110 alpha/beta hydrolase fold; alpha/beta hydrolase 403995..405125 Burkholderia ambifaria MC40-6 6182770 YP_001815863.1 CDS BamMC406_5873 NC_010557.1 405630 406016 D KEGG: bur:Bcep18194_A5989 hypothetical protein; hypothetical protein 405630..406016 Burkholderia ambifaria MC40-6 6182393 YP_001815864.1 CDS BamMC406_5874 NC_010557.1 405940 406977 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6111 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(405940..406977) Burkholderia ambifaria MC40-6 6182772 YP_001815865.1 CDS BamMC406_5875 NC_010557.1 407201 408067 D PFAM: NmrA family protein; KEGG: bam:Bamb_6112 NmrA family protein; NmrA family protein 407201..408067 Burkholderia ambifaria MC40-6 6182773 YP_001815866.1 CDS BamMC406_5876 NC_010557.1 408161 408964 D KEGG: bam:Bamb_6113 hypothetical protein; hypothetical protein 408161..408964 Burkholderia ambifaria MC40-6 6182774 YP_001815867.1 CDS BamMC406_5877 NC_010557.1 409094 410035 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmu:Bmul_6135 transcriptional regulator, LysR family; LysR family transcriptional regulator 409094..410035 Burkholderia ambifaria MC40-6 6182775 YP_001815868.1 CDS BamMC406_5878 NC_010557.1 410110 411519 D catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 410110..411519 Burkholderia ambifaria MC40-6 6182776 YP_001815869.1 CDS BamMC406_5879 NC_010557.1 411506 412720 D TIGRFAM: CitB domain protein; KEGG: bmu:Bmul_6133 CitB domain protein; CitB domain-containing protein 411506..412720 Burkholderia ambifaria MC40-6 6182777 YP_001815870.1 CDS BamMC406_5880 NC_010557.1 412776 414098 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bmu:Bmul_6132 metabolite/H+ symporter, major facilitator superfamily (MFS); major facilitator superfamily metabolite/H(+) symporter 412776..414098 Burkholderia ambifaria MC40-6 6182778 YP_001815871.1 CDS BamMC406_5881 NC_010557.1 414603 415283 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bam:Bamb_6120 transcriptional regulator, GntR family; GntR family transcriptional regulator 414603..415283 Burkholderia ambifaria MC40-6 6182779 YP_001815872.1 CDS BamMC406_5882 NC_010557.1 415384 415578 R KEGG: bam:Bamb_6121 hypothetical protein; hypothetical protein complement(415384..415578) Burkholderia ambifaria MC40-6 6182780 YP_001815873.1 CDS BamMC406_5883 NC_010557.1 416489 417475 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bam:Bamb_6123 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 416489..417475 Burkholderia ambifaria MC40-6 6182781 YP_001815874.1 CDS BamMC406_5884 NC_010557.1 417472 418050 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bam:Bamb_6124 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 417472..418050 Burkholderia ambifaria MC40-6 6182467 YP_001815875.1 CDS BamMC406_5885 NC_010557.1 418055 419407 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bam:Bamb_6125 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 418055..419407 Burkholderia ambifaria MC40-6 6182468 YP_001815876.1 CDS BamMC406_5886 NC_010557.1 419507 420598 D KEGG: bam:Bamb_6126 hypothetical protein; 6-phosphogluconolactonase 419507..420598 Burkholderia ambifaria MC40-6 6182469 YP_001815877.1 CDS BamMC406_5887 NC_010557.1 420683 422242 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bam:Bamb_6127 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 420683..422242 Burkholderia ambifaria MC40-6 6182470 YP_001815878.1 CDS BamMC406_5888 NC_010557.1 422428 423252 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6154 alpha/beta hydrolase fold; alpha/beta hydrolase 422428..423252 Burkholderia ambifaria MC40-6 6182471 YP_001815879.1 CDS BamMC406_5889 NC_010557.1 423331 424800 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6155 general substrate transporter; general substrate transporter complement(423331..424800) Burkholderia ambifaria MC40-6 6182472 YP_001815880.1 CDS BamMC406_5890 NC_010557.1 425323 426390 R PFAM: porin Gram-negative type; KEGG: bam:Bamb_6157 porin, gram-negative type; porin complement(425323..426390) Burkholderia ambifaria MC40-6 6182473 YP_001815881.1 CDS BamMC406_5891 NC_010557.1 426619 428613 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(426619..428613) Burkholderia ambifaria MC40-6 6182474 YP_001815882.1 CDS BamMC406_5892 NC_010557.1 428865 430730 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: bam:Bamb_6159 RNA polymerase, sigma 28 subunit; RpoD family RNA polymerase sigma factor complement(428865..430730) Burkholderia ambifaria MC40-6 6182475 YP_001815883.1 CDS BamMC406_5893 NC_010557.1 430747 431064 R PFAM: High potential iron-sulfur protein; KEGG: bam:Bamb_6160 high potential iron-sulfur protein; high potential iron-sulfur protein complement(430747..431064) Burkholderia ambifaria MC40-6 6182476 YP_001815884.1 CDS BamMC406_5894 NC_010557.1 431140 432405 R PFAM: cytochrome c class I; SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6161 cytochrome c, class I; cytochrome c class I complement(431140..432405) Burkholderia ambifaria MC40-6 6182477 YP_001815885.1 CDS BamMC406_5895 NC_010557.1 432476 434203 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: bam:Bamb_6162 pyrrolo-quinoline quinone; methanol/ethanol family PQQ-dependent dehydrogenase complement(432476..434203) Burkholderia ambifaria MC40-6 6182478 YP_001815886.1 CDS BamMC406_5896 NC_010557.1 434976 435980 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6163 prolyl aminopeptidase; prolyl aminopeptidase complement(434976..435980) Burkholderia ambifaria MC40-6 6182479 YP_001815887.1 CDS BamMC406_5897 NC_010557.1 436309 438318 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_6164 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 436309..438318 Burkholderia ambifaria MC40-6 6182480 YP_001815888.1 CDS BamMC406_5898 NC_010557.1 438750 439673 D possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 438750..439673 Burkholderia ambifaria MC40-6 6182481 YP_001815889.1 CDS BamMC406_5899 NC_010557.1 439676 440395 D Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 439676..440395 Burkholderia ambifaria MC40-6 6182482 YP_001815890.1 CDS BamMC406_5900 NC_010557.1 440392 440673 D PFAM: coenzyme PQQ synthesis D; KEGG: bvi:Bcep1808_6555 coenzyme PQQ synthesis D; coenzyme PQQ synthesis D 440392..440673 Burkholderia ambifaria MC40-6 6182483 YP_001815891.1 CDS BamMC406_5901 NC_010557.1 440675 441799 D KEGG: bam:Bamb_6168 pyrroloquinoline quinone biosynthesis protein PqqE; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 440675..441799 Burkholderia ambifaria MC40-6 6182484 YP_001815892.1 CDS BamMC406_5902 NC_010557.1 442878 443948 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_6170 transcriptional regulator, AraC family; AraC family transcriptional regulator 442878..443948 Burkholderia ambifaria MC40-6 6182485 YP_001815893.1 CDS BamMC406_5903 NC_010557.1 444164 444769 R KEGG: bur:Bcep18194_C7402 hypothetical protein; hypothetical protein complement(444164..444769) Burkholderia ambifaria MC40-6 6182486 YP_001815894.1 CDS BamMC406_5904 NC_010557.1 444789 445865 D KEGG: bam:Bamb_6172 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 444789..445865 Burkholderia ambifaria MC40-6 6182487 YP_001815895.1 CDS BamMC406_5905 NC_010557.1 446071 447228 D PFAM: polysaccharide export protein; KEGG: bam:Bamb_6173 polysaccharide export protein; polysaccharide export protein 446071..447228 Burkholderia ambifaria MC40-6 6182488 YP_001815896.1 CDS BamMC406_5906 NC_010557.1 447225 447659 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bam:Bamb_6174 protein tyrosine phosphatase; protein tyrosine phosphatase 447225..447659 Burkholderia ambifaria MC40-6 6182267 YP_001815897.1 CDS BamMC406_5907 NC_010557.1 447713 449950 D KEGG: bam:Bamb_6175 exopolysaccharide transport protein family; TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide transport family protein 447713..449950 Burkholderia ambifaria MC40-6 6182268 YP_001815898.1 CDS BamMC406_5908 NC_010557.1 450017 451249 D PFAM: polysaccharide biosynthesis protein; KEGG: bam:Bamb_6176 hypothetical protein; polysaccharide biosynthesis protein 450017..451249 Burkholderia ambifaria MC40-6 6182269 YP_001815899.1 CDS BamMC406_5909 NC_010557.1 451278 452477 D PFAM: Capsule polysaccharide biosynthesis protein; KEGG: bam:Bamb_6177 capsule polysaccharide biosynthesis; capsule polysaccharide biosynthesis protein 451278..452477 Burkholderia ambifaria MC40-6 6182270 YP_001815900.1 CDS BamMC406_5910 NC_010557.1 452479 453009 D KEGG: bam:Bamb_6178 transferase, hexapeptide repeat; hexapaptide repeat-containing transferase 452479..453009 Burkholderia ambifaria MC40-6 6182271 YP_001815901.1 CDS BamMC406_5911 NC_010557.1 453006 453998 D KEGG: bam:Bamb_6179 hypothetical protein; hypothetical protein 453006..453998 Burkholderia ambifaria MC40-6 6182272 YP_001815902.1 CDS BamMC406_5912 NC_010557.1 454053 455135 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_6180 glycosyl transferase, group 1; group 1 glycosyl transferase 454053..455135 Burkholderia ambifaria MC40-6 6182273 YP_001815903.1 CDS BamMC406_5913 NC_010557.1 455229 456074 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 455229..456074 Burkholderia ambifaria MC40-6 6182274 YP_001815904.1 CDS BamMC406_5914 NC_010557.1 456071 456631 D TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: bam:Bamb_6183 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 456071..456631 Burkholderia ambifaria MC40-6 6182275 YP_001815905.1 CDS BamMC406_5915 NC_010557.1 456615 457418 D KEGG: bam:Bamb_6184 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 456615..457418 Burkholderia ambifaria MC40-6 6182276 YP_001815906.1 CDS BamMC406_5916 NC_010557.1 457399 458331 D KEGG: bam:Bamb_6185 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 457399..458331 Burkholderia ambifaria MC40-6 6182277 YP_001815907.1 CDS BamMC406_5917 NC_010557.1 458393 459529 R PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: bam:Bamb_6186 glycosyl hydrolase, BNR repeat-containing protein; glycosyl hydrolase BNR repeat-containing glycosyl hydrolase complement(458393..459529) Burkholderia ambifaria MC40-6 6182278 YP_001815908.1 CDS BamMC406_5918 NC_010557.1 459592 460785 R KEGG: bam:Bamb_6187 hypothetical protein; hypothetical protein complement(459592..460785) Burkholderia ambifaria MC40-6 6182279 YP_001815909.1 CDS BamMC406_5919 NC_010557.1 461043 461636 R PFAM: phosphoesterase PA-phosphatase related; KEGG: bam:Bamb_6188 phosphoesterase, PA-phosphatase related; PA-phosphatase like phosphoesterase complement(461043..461636) Burkholderia ambifaria MC40-6 6182280 YP_001815910.1 CDS BamMC406_5920 NC_010557.1 461662 462546 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bam:Bamb_6189 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase complement(461662..462546) Burkholderia ambifaria MC40-6 6182281 YP_001815911.1 CDS BamMC406_5921 NC_010557.1 462905 463138 D KEGG: bam:Bamb_6190 putative flagellar transcriptional activator FlhD; putative flagellar transcriptional activator FlhD 462905..463138 Burkholderia ambifaria MC40-6 6182282 YP_001815912.1 CDS BamMC406_5922 NC_010557.1 463257 463565 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bam:Bamb_6191 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 463257..463565 Burkholderia ambifaria MC40-6 6182283 YP_001815913.1 CDS BamMC406_5923 NC_010557.1 463587 464663 R KEGG: bam:Bamb_6192 DNA topoisomerase, type I, putative; DNA topoisomerase complement(463587..464663) Burkholderia ambifaria MC40-6 6182284 YP_001815914.1 CDS BamMC406_5924 NC_010557.1 465161 466123 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_6193 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 465161..466123 Burkholderia ambifaria MC40-6 6182285 YP_001815915.1 CDS BamMC406_5925 NC_010557.1 466190 467704 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_6194 ABC transporter related; ABC transporter 466190..467704 Burkholderia ambifaria MC40-6 6182286 YP_001815916.1 CDS BamMC406_5926 NC_010557.1 467701 468741 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_6195 inner-membrane translocator; monosaccharide-transporting ATPase 467701..468741 Burkholderia ambifaria MC40-6 6182287 YP_001815917.1 CDS BamMC406_5927 NC_010557.1 468738 469826 D membrane component of a putative sugar ABC transporter system; inner membrane ABC transporter permease YjfF 468738..469826 Burkholderia ambifaria MC40-6 6182288 YP_001815918.1 CDS BamMC406_5928 NC_010557.1 469913 472246 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_6197 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(469913..472246) Burkholderia ambifaria MC40-6 6182289 YP_001815919.1 CDS BamMC406_5929 NC_010557.1 472239 473072 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bam:Bamb_6198 two component transcriptional regulator, AraC family; two component AraC family transcriptional regulator complement(472239..473072) Burkholderia ambifaria MC40-6 6182176 YP_001815920.1 CDS BamMC406_5930 NC_010557.1 474539 478843 D PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bch:Bcen2424_5983 YadA C-terminal domain protein; YadA domain-containing protein 474539..478843 Burkholderia ambifaria MC40-6 6182177 YP_001815921.1 CDS BamMC406_5931 NC_010557.1 478969 479631 D PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_6202 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 478969..479631 Burkholderia ambifaria MC40-6 6182178 YP_001815922.1 CDS BamMC406_5932 NC_010557.1 479845 480033 R KEGG: bvi:Bcep1808_3821 hypothetical protein; hypothetical protein complement(479845..480033) Burkholderia ambifaria MC40-6 6182179 YP_001815923.1 CDS BamMC406_5933 NC_010557.1 480136 480339 D KEGG: bam:Bamb_6204 hypothetical protein; hypothetical protein 480136..480339 Burkholderia ambifaria MC40-6 6182180 YP_001815924.1 CDS BamMC406_5934 NC_010557.1 480388 480897 D KEGG: bam:Bamb_6207 hypothetical protein; hypothetical protein 480388..480897 Burkholderia ambifaria MC40-6 6182181 YP_001815925.1 CDS BamMC406_5935 NC_010557.1 481164 481679 D KEGG: bam:Bamb_6208 hypothetical protein; hypothetical protein 481164..481679 Burkholderia ambifaria MC40-6 6182182 YP_001815926.1 CDS BamMC406_5936 NC_010557.1 482020 483168 D PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: bam:Bamb_6209 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 482020..483168 Burkholderia ambifaria MC40-6 6182183 YP_001815927.1 CDS BamMC406_5937 NC_010557.1 483182 484942 D KEGG: bam:Bamb_6210 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 483182..484942 Burkholderia ambifaria MC40-6 6182184 YP_001815928.1 CDS BamMC406_5938 NC_010557.1 484939 485550 D KEGG: bam:Bamb_6211 heme/copper-type cytochrome/quinol oxidase subunit 3-like protein; heme/copper-type cytochrome/quinol oxidase subunit 3-like protein 484939..485550 Burkholderia ambifaria MC40-6 6182185 YP_001815929.1 CDS BamMC406_5939 NC_010557.1 485547 486269 D PFAM: cytochrome c oxidase subunit III; KEGG: bam:Bamb_6212 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 485547..486269 Burkholderia ambifaria MC40-6 6182186 YP_001815930.1 CDS BamMC406_5940 NC_010557.1 486278 486619 D KEGG: bam:Bamb_6213 small integral membrane protein; small integral membrane protein 486278..486619 Burkholderia ambifaria MC40-6 6182187 YP_001815931.1 CDS BamMC406_5941 NC_010557.1 486650 486964 D PFAM: High potential iron-sulfur protein; KEGG: bam:Bamb_6214 high potential iron-sulfur protein; high potential iron-sulfur protein 486650..486964 Burkholderia ambifaria MC40-6 6182188 YP_001815932.1 CDS BamMC406_5942 NC_010557.1 487089 488003 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6215 transcriptional regulator, LysR family; LysR family transcriptional regulator 487089..488003 Burkholderia ambifaria MC40-6 6182189 YP_001815933.1 CDS BamMC406_5943 NC_010557.1 488187 489461 D PFAM: sodium:dicarboxylate symporter; KEGG: bam:Bamb_6216 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 488187..489461 Burkholderia ambifaria MC40-6 6182190 YP_001815934.1 CDS BamMC406_5944 NC_010557.1 489461 490930 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: bam:Bamb_6217 aspartate racemase; aspartate racemase 489461..490930 Burkholderia ambifaria MC40-6 6182191 YP_001815935.1 CDS BamMC406_5945 NC_010557.1 491025 497015 D KEGG: bam:Bamb_6248 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 491025..497015 Burkholderia ambifaria MC40-6 6182192 YP_001815936.1 CDS BamMC406_5946 NC_010557.1 497096 498037 R PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6249 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(497096..498037) Burkholderia ambifaria MC40-6 6182193 YP_001815937.1 CDS BamMC406_5947 NC_010557.1 498051 499358 R PFAM: sodium:dicarboxylate symporter; KEGG: bam:Bamb_6250 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(498051..499358) Burkholderia ambifaria MC40-6 6182194 YP_001815938.1 CDS BamMC406_5948 NC_010557.1 499593 499778 D KEGG: bam:Bamb_6253 aminotransferase, class V; hypothetical protein 499593..499778 Burkholderia ambifaria MC40-6 6182195 YP_001815939.1 CDS BamMC406_5950 NC_010557.1 500275 501150 D PFAM: HpcH/HpaI aldolase; KEGG: bam:Bamb_6255 HpcH/HpaI aldolase; HpcH/HpaI aldolase 500275..501150 Burkholderia ambifaria MC40-6 6182394 YP_001815940.1 CDS BamMC406_5951 NC_010557.1 501215 502132 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6256 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(501215..502132) Burkholderia ambifaria MC40-6 6182197 YP_001815941.1 CDS BamMC406_5952 NC_010557.1 502259 502657 D PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_6257 endoribonuclease L-PSP; endoribonuclease L-PSP 502259..502657 Burkholderia ambifaria MC40-6 6182198 YP_001815942.1 CDS BamMC406_5953 NC_010557.1 502717 503664 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_6258 transcriptional regulator, AraC family; AraC family transcriptional regulator 502717..503664 Burkholderia ambifaria MC40-6 6182245 YP_001815943.1 CDS BamMC406_5954 NC_010557.1 503730 504212 R KEGG: bam:Bamb_6259 hypothetical protein; hypothetical protein complement(503730..504212) Burkholderia ambifaria MC40-6 6182246 YP_001815944.1 CDS BamMC406_5955 NC_010557.1 504334 505188 R PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_6260 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein complement(504334..505188) Burkholderia ambifaria MC40-6 6182247 YP_001815945.1 CDS BamMC406_5956 NC_010557.1 505291 506037 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_6261 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(505291..506037) Burkholderia ambifaria MC40-6 6182248 YP_001815946.1 CDS BamMC406_5957 NC_010557.1 506429 507469 D PFAM: lipase class 3; KEGG: bam:Bamb_6262 lipase, class 3; lipase class 3 506429..507469 Burkholderia ambifaria MC40-6 6182249 YP_001815947.1 CDS BamMC406_5958 NC_010557.1 507941 509053 D PFAM: aldo/keto reductase; KEGG: bam:Bamb_6263 aldo/keto reductase; aldo/keto reductase 507941..509053 Burkholderia ambifaria MC40-6 6182250 YP_001815948.1 CDS BamMC406_5959 NC_010557.1 509028 509732 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_6299 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(509028..509732) Burkholderia ambifaria MC40-6 6182251 YP_001815949.1 CDS BamMC406_5960 NC_010557.1 509744 510550 R PFAM: regulatory protein DeoR; KEGG: bch:Bcen2424_6298 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(509744..510550) Burkholderia ambifaria MC40-6 6182252 YP_001815950.1 CDS BamMC406_5961 NC_010557.1 510655 511842 R PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: bch:Bcen2424_6297 glycosyl hydrolase, BNR repeat-containing protein; glycosyl hydrolase BNR repeat-containing glycosyl hydrolase complement(510655..511842) Burkholderia ambifaria MC40-6 6182253 YP_001815951.1 CDS BamMC406_5962 NC_010557.1 511866 513284 R PFAM: Na+/solute symporter; KEGG: bch:Bcen2424_6296 Na+/solute symporter; Na+/solute symporter complement(511866..513284) Burkholderia ambifaria MC40-6 6182254 YP_001815952.1 CDS pdxA NC_010557.1 513403 514422 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(513403..514422) Burkholderia ambifaria MC40-6 6182255 YP_001815953.1 CDS BamMC406_5964 NC_010557.1 514434 515717 R KEGG: bch:Bcen2424_6294 type III effector Hrp-dependent outers; Hrp-dependent type III effector protein complement(514434..515717) Burkholderia ambifaria MC40-6 6182256 YP_001815954.1 CDS BamMC406_5965 NC_010557.1 515714 516880 R PFAM: iron-containing alcohol dehydrogenase; KEGG: bch:Bcen2424_6293 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(515714..516880) Burkholderia ambifaria MC40-6 6182257 YP_001815955.1 CDS BamMC406_5966 NC_010557.1 516895 517791 R KEGG: bch:Bcen2424_6292 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase complement(516895..517791) Burkholderia ambifaria MC40-6 6182258 YP_001815956.1 CDS BamMC406_5967 NC_010557.1 518242 519675 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bam:Bamb_6264 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 518242..519675 Burkholderia ambifaria MC40-6 6182259 YP_001815957.1 CDS BamMC406_5968 NC_010557.1 520553 520786 R KEGG: amr:AM1_0785 hypothetical protein; hypothetical protein complement(520553..520786) Burkholderia ambifaria MC40-6 6182260 YP_001815958.1 CDS BamMC406_5969 NC_010557.1 521050 521532 D hypothetical protein 521050..521532 Burkholderia ambifaria MC40-6 6182261 YP_001815959.1 CDS BamMC406_5970 NC_010557.1 521974 522180 R hypothetical protein complement(521974..522180) Burkholderia ambifaria MC40-6 6182262 YP_001815960.1 CDS BamMC406_5971 NC_010557.1 522550 523428 R KEGG: bam:Bamb_6267 putative signal peptide protein; putative signal peptide protein complement(522550..523428) Burkholderia ambifaria MC40-6 6182263 YP_001815961.1 CDS BamMC406_5972 NC_010557.1 523723 525111 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6268 major facilitator superfamily MFS_1; major facilitator transporter complement(523723..525111) Burkholderia ambifaria MC40-6 6182264 YP_001815962.1 CDS BamMC406_5973 NC_010557.1 525212 526390 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_6269 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(525212..526390) Burkholderia ambifaria MC40-6 6182265 YP_001815963.1 CDS BamMC406_5974 NC_010557.1 526405 527562 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bam:Bamb_6270 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(526405..527562) Burkholderia ambifaria MC40-6 6182266 YP_001815964.1 CDS BamMC406_5975 NC_010557.1 527593 528438 R KEGG: bam:Bamb_6271 hypothetical protein; hypothetical protein complement(527593..528438) Burkholderia ambifaria MC40-6 6181927 YP_001815965.1 CDS BamMC406_5976 NC_010557.1 528578 529528 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6272 transcriptional regulator, LysR family; LysR family transcriptional regulator 528578..529528 Burkholderia ambifaria MC40-6 6181928 YP_001815966.1 CDS BamMC406_5977 NC_010557.1 529612 530346 R SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6273 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(529612..530346) Burkholderia ambifaria MC40-6 6181929 YP_001815967.1 CDS BamMC406_5978 NC_010557.1 530441 530734 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bam:Bamb_6274 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(530441..530734) Burkholderia ambifaria MC40-6 6181930 YP_001815968.1 CDS BamMC406_5979 NC_010557.1 531068 531505 D KEGG: bam:Bamb_6275 hypothetical protein; hypothetical protein 531068..531505 Burkholderia ambifaria MC40-6 6181931 YP_001815969.1 CDS BamMC406_5980 NC_010557.1 531611 533020 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; KEGG: bam:Bamb_6276 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 531611..533020 Burkholderia ambifaria MC40-6 6181932 YP_001815970.1 CDS BamMC406_5981 NC_010557.1 533099 534907 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; KEGG: bam:Bamb_6277 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 533099..534907 Burkholderia ambifaria MC40-6 6181933 YP_001815971.1 CDS BamMC406_5982 NC_010557.1 534932 536008 R KEGG: bam:Bamb_6278 poly(3-hydroxybutyrate) depolymerase-like protein; poly(3-hydroxybutyrate) depolymerase-like protein complement(534932..536008) Burkholderia ambifaria MC40-6 6181934 YP_001815972.1 CDS BamMC406_5983 NC_010557.1 536353 537261 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6279 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(536353..537261) Burkholderia ambifaria MC40-6 6181935 YP_001815973.1 CDS BamMC406_5984 NC_010557.1 537543 538484 D PFAM: pyruvate carboxyltransferase; KEGG: bam:Bamb_6280 pyruvate carboxyltransferase; pyruvate carboxyltransferase 537543..538484 Burkholderia ambifaria MC40-6 6181936 YP_001815974.1 CDS BamMC406_5985 NC_010557.1 538492 539643 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_6281 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 538492..539643 Burkholderia ambifaria MC40-6 6181937 YP_001815975.1 CDS BamMC406_5986 NC_010557.1 539803 541242 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6282 major facilitator superfamily MFS_1; major facilitator transporter 539803..541242 Burkholderia ambifaria MC40-6 6181938 YP_001815976.1 CDS BamMC406_5987 NC_010557.1 541285 541668 R PFAM: GtrA family protein; KEGG: bam:Bamb_6283 GtrA family protein; GtrA family protein complement(541285..541668) Burkholderia ambifaria MC40-6 6181939 YP_001815977.1 CDS BamMC406_5988 NC_010557.1 541684 542727 R PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_6284 glycosyl transferase, family 2; ribonuclease III complement(541684..542727) Burkholderia ambifaria MC40-6 6181940 YP_001815978.1 CDS BamMC406_5989 NC_010557.1 542751 544130 R KEGG: bam:Bamb_6285 hypothetical protein; hypothetical protein complement(542751..544130) Burkholderia ambifaria MC40-6 6181941 YP_001815979.1 CDS BamMC406_5990 NC_010557.1 544127 545365 R KEGG: bam:Bamb_6286 hypothetical protein; hypothetical protein complement(544127..545365) Burkholderia ambifaria MC40-6 6181942 YP_001815980.1 CDS BamMC406_5991 NC_010557.1 546404 546586 D PFAM: Flp/Fap pilin component; KEGG: bam:Bamb_6287 Flp/Fap pilin component; Flp/Fap pilin component 546404..546586 Burkholderia ambifaria MC40-6 6181943 YP_001815981.1 CDS BamMC406_5992 NC_010557.1 546754 546960 D PFAM: Flp/Fap pilin component; KEGG: bam:Bamb_6288 Flp/Fap pilin component; Flp/Fap pilin component 546754..546960 Burkholderia ambifaria MC40-6 6181944 YP_001815982.1 CDS BamMC406_5993 NC_010557.1 546992 547531 D PFAM: peptidase A24A prepilin type IV; KEGG: bam:Bamb_6289 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 546992..547531 Burkholderia ambifaria MC40-6 6181945 YP_001815983.1 CDS BamMC406_5994 NC_010557.1 547564 548964 D SMART: AAA ATPase; KEGG: bam:Bamb_6290 AAA ATPase; AAA ATPase 547564..548964 Burkholderia ambifaria MC40-6 6181946 YP_001815984.1 CDS BamMC406_5995 NC_010557.1 549000 549845 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bam:Bamb_6291 Flp pilus assembly CpaB; Flp pilus assembly protein CpaB 549000..549845 Burkholderia ambifaria MC40-6 6181947 YP_001815985.1 CDS BamMC406_5996 NC_010557.1 549959 551929 D PFAM: type II and III secretion system protein; transport-associated; KEGG: bam:Bamb_6292 type II and III secretion system protein; type II and III secretion system protein 549959..551929 Burkholderia ambifaria MC40-6 6181948 YP_001815986.1 CDS BamMC406_5997 NC_010557.1 551950 552246 D KEGG: bam:Bamb_6293 hypothetical protein; hypothetical protein 551950..552246 Burkholderia ambifaria MC40-6 6181949 YP_001815987.1 CDS BamMC406_5998 NC_010557.1 552272 553543 D KEGG: bam:Bamb_6294 hypothetical protein; hypothetical protein 552272..553543 Burkholderia ambifaria MC40-6 6181883 YP_001815988.1 CDS BamMC406_5999 NC_010557.1 553557 554090 D PFAM: TadE family protein; KEGG: bam:Bamb_6295 TadE family protein; TadE family protein 553557..554090 Burkholderia ambifaria MC40-6 6181884 YP_001815989.1 CDS BamMC406_6000 NC_010557.1 554087 554530 D PFAM: TadE family protein; KEGG: bam:Bamb_6296 TadE family protein; TadE family protein 554087..554530 Burkholderia ambifaria MC40-6 6181885 YP_001815990.1 CDS BamMC406_6001 NC_010557.1 554551 555759 D PFAM: response regulator receiver; KEGG: bam:Bamb_6297 response regulator receiver protein; response regulator receiver protein 554551..555759 Burkholderia ambifaria MC40-6 6181886 YP_001815991.1 CDS BamMC406_6002 NC_010557.1 555779 557146 D PFAM: type II secretion system protein E; KEGG: bam:Bamb_6298 type II secretion system protein E; type II secretion system protein E 555779..557146 Burkholderia ambifaria MC40-6 6181887 YP_001815992.1 CDS BamMC406_6003 NC_010557.1 557180 558157 D PFAM: type II secretion system protein; KEGG: bam:Bamb_6299 type II secretion system protein; type II secretion system protein 557180..558157 Burkholderia ambifaria MC40-6 6181888 YP_001815993.1 CDS BamMC406_6004 NC_010557.1 558196 559170 D PFAM: type II secretion system protein; KEGG: bam:Bamb_6300 type II secretion system protein; type II secretion system protein 558196..559170 Burkholderia ambifaria MC40-6 6181889 YP_001815994.1 CDS BamMC406_6005 NC_010557.1 559754 562483 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_6301 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 559754..562483 Burkholderia ambifaria MC40-6 6181890 YP_001815995.1 CDS BamMC406_6006 NC_010557.1 562480 562998 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_6302 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 562480..562998 Burkholderia ambifaria MC40-6 6181891 YP_001815996.1 CDS BamMC406_6007 NC_010557.1 562995 563996 D KEGG: bam:Bamb_6303 hypothetical protein; hypothetical protein 562995..563996 Burkholderia ambifaria MC40-6 6181892 YP_001815997.1 CDS BamMC406_6008 NC_010557.1 564025 565287 R PFAM: beta-lactamase; KEGG: bam:Bamb_6304 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(564025..565287) Burkholderia ambifaria MC40-6 6181893 YP_001815998.1 CDS BamMC406_6009 NC_010557.1 565432 566391 R KEGG: bam:Bamb_6305 protein involved in MetA-pathway of phenol degradation-like protein; protein involved in MetA-pathway of phenol degradation-like protein complement(565432..566391) Burkholderia ambifaria MC40-6 6181894 YP_001815999.1 CDS BamMC406_6010 NC_010557.1 566425 566952 R PFAM: flavin reductase domain protein FMN-binding; KEGG: bam:Bamb_6306 flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein complement(566425..566952) Burkholderia ambifaria MC40-6 6181895 YP_001816000.1 CDS BamMC406_6011 NC_010557.1 566958 568196 R KEGG: bam:Bamb_6307 hypothetical protein; hypothetical protein complement(566958..568196) Burkholderia ambifaria MC40-6 6181896 YP_001816001.1 CDS BamMC406_6012 NC_010557.1 568260 569048 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_6308 short chain dehydrogenase; short chain dehydrogenase complement(568260..569048) Burkholderia ambifaria MC40-6 6181897 YP_001816002.1 CDS BamMC406_6013 NC_010557.1 569128 570357 R PFAM: dienelactone hydrolase; KEGG: bam:Bamb_6309 carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(569128..570357) Burkholderia ambifaria MC40-6 6181898 YP_001816003.1 CDS BamMC406_6014 NC_010557.1 570450 571502 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_4247 transposase, IS605 OrfB family; IS605 family transposase OrfB 570450..571502 Burkholderia ambifaria MC40-6 6181899 YP_001816004.1 CDS BamMC406_6015 NC_010557.1 571842 572867 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_6310 transcriptional regulator, AraC family; AraC family transcriptional regulator 571842..572867 Burkholderia ambifaria MC40-6 6181900 YP_001816005.1 CDS BamMC406_6016 NC_010557.1 573074 574183 R TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_6311 alcohol dehydrogenase GroES domain protein; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(573074..574183) Burkholderia ambifaria MC40-6 6181901 YP_001816006.1 CDS BamMC406_6017 NC_010557.1 574240 574515 R formaldehyde-induced negative regulator of the frmRAB operon; regulator protein FrmR complement(574240..574515) Burkholderia ambifaria MC40-6 6181902 YP_001816007.1 CDS BamMC406_6018 NC_010557.1 574615 575577 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6318 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(574615..575577) Burkholderia ambifaria MC40-6 6181903 YP_001816008.1 CDS BamMC406_6019 NC_010557.1 575723 576892 D KEGG: bam:Bamb_6319 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 575723..576892 Burkholderia ambifaria MC40-6 6181904 YP_001816009.1 CDS BamMC406_6020 NC_010557.1 576946 577740 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6320 extracellular solute-binding protein, family 3; extracellular solute-binding protein 576946..577740 Burkholderia ambifaria MC40-6 6181837 YP_001816010.1 CDS BamMC406_6021 NC_010557.1 577759 578379 D KEGG: bam:Bamb_6321 porin, gram-negative type; porin 577759..578379 Burkholderia ambifaria MC40-6 6181838 YP_001816011.1 CDS BamMC406_6022 NC_010557.1 578508 579521 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bam:Bamb_6322 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(578508..579521) Burkholderia ambifaria MC40-6 6181839 YP_001816012.1 CDS BamMC406_6023 NC_010557.1 579757 580911 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_6323 ABC transporter related; ABC transporter 579757..580911 Burkholderia ambifaria MC40-6 6181840 YP_001816013.1 CDS BamMC406_6024 NC_010557.1 580980 582218 D PFAM: extracellular solute-binding protein family 1; KEGG: bam:Bamb_6324 extracellular solute-binding protein, family 1; extracellular solute-binding protein 580980..582218 Burkholderia ambifaria MC40-6 6181841 YP_001816014.1 CDS BamMC406_6025 NC_010557.1 582338 583255 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_6325 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 582338..583255 Burkholderia ambifaria MC40-6 6181842 YP_001816015.1 CDS BamMC406_6026 NC_010557.1 583267 584118 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_6326 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 583267..584118 Burkholderia ambifaria MC40-6 6181843 YP_001816016.1 CDS BamMC406_6027 NC_010557.1 584157 586127 D PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bam:Bamb_6327 beta-galactosidase; beta-galactosidase 584157..586127 Burkholderia ambifaria MC40-6 6181844 YP_001816017.1 CDS BamMC406_6028 NC_010557.1 586132 587427 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_6328 major facilitator superfamily MFS_1; major facilitator transporter 586132..587427 Burkholderia ambifaria MC40-6 6181845 YP_001816018.1 CDS BamMC406_6029 NC_010557.1 587487 588659 R PFAM: glycosyl hydrolase 53 domain protein; KEGG: bam:Bamb_6329 arabinogalactan endo-1,4-beta-galactosidase; arabinogalactan endo-1,4-beta-galactosidase complement(587487..588659) Burkholderia ambifaria MC40-6 6181846 YP_001816019.1 CDS BamMC406_6030 NC_010557.1 588827 589915 R PFAM: Aldose 1-epimerase; KEGG: bam:Bamb_6330 aldose 1-epimerase; aldose 1-epimerase complement(588827..589915) Burkholderia ambifaria MC40-6 6181847 YP_001816020.1 CDS BamMC406_6031 NC_010557.1 589943 591136 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_6331 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(589943..591136) Burkholderia ambifaria MC40-6 6181848 YP_001816021.1 CDS BamMC406_6032 NC_010557.1 591402 592724 D catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 591402..592724 Burkholderia ambifaria MC40-6 6181849 YP_001816022.1 CDS BamMC406_6033 NC_010557.1 592729 594207 D TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bam:Bamb_6333 xylulokinase; xylulokinase 592729..594207 Burkholderia ambifaria MC40-6 6181850 YP_001816023.1 CDS BamMC406_6034 NC_010557.1 594265 595293 D KEGG: bam:Bamb_6334 D-xylose ABC transporter, periplasmic substrate-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; D-xylose ABC transporter periplasmic substrate-binding protein 594265..595293 Burkholderia ambifaria MC40-6 6181851 YP_001816024.1 CDS BamMC406_6035 NC_010557.1 595365 596924 D with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit 595365..596924 Burkholderia ambifaria MC40-6 6181852 YP_001816025.1 CDS BamMC406_6036 NC_010557.1 596921 598120 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_6336 inner-membrane translocator; monosaccharide-transporting ATPase 596921..598120 Burkholderia ambifaria MC40-6 6181853 YP_001816026.1 CDS BamMC406_6037 NC_010557.1 598139 599041 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6337 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(598139..599041) Burkholderia ambifaria MC40-6 6181854 YP_001816027.1 CDS BamMC406_6038 NC_010557.1 599141 600016 D PFAM: aldo/keto reductase; KEGG: bam:Bamb_6338 aldo/keto reductase; putative oxidoreductase 599141..600016 Burkholderia ambifaria MC40-6 6181855 YP_001816028.1 CDS BamMC406_6039 NC_010557.1 600085 600483 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_6339 cupin 2, conserved barrel domain protein; cupin complement(600085..600483) Burkholderia ambifaria MC40-6 6181856 YP_001816029.1 CDS BamMC406_6040 NC_010557.1 600841 601011 R KEGG: bam:Bamb_6342 hypothetical protein; hypothetical protein complement(600841..601011) Burkholderia ambifaria MC40-6 6181857 YP_001816030.1 CDS BamMC406_6041 NC_010557.1 601011 601979 R PFAM: protein of unknown function DUF72; KEGG: bam:Bamb_6343 protein of unknown function DUF72; hypothetical protein complement(601011..601979) Burkholderia ambifaria MC40-6 6181858 YP_001816031.1 CDS BamMC406_6042 NC_010557.1 602162 604261 R PFAM: CoA-binding domain protein; KEGG: reu:Reut_B4596 CoA-binding; CoA-binding domain-containing protein complement(602162..604261) Burkholderia ambifaria MC40-6 6181859 YP_001816032.1 CDS BamMC406_6043 NC_010557.1 604281 605057 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_B1439 enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase/isomerase complement(604281..605057) Burkholderia ambifaria MC40-6 6182062 YP_001816033.1 CDS BamMC406_6044 NC_010557.1 605332 606663 D PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_1075 major facilitator superfamily MFS_1; major facilitator transporter 605332..606663 Burkholderia ambifaria MC40-6 6182063 YP_001816034.1 CDS BamMC406_6045 NC_010557.1 606691 607497 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B4595 regulatory protein, IclR; IclR family transcriptional regulator complement(606691..607497) Burkholderia ambifaria MC40-6 6182064 YP_001816035.1 CDS BamMC406_6046 NC_010557.1 607622 608407 D PFAM: extracellular solute-binding protein family 1; KEGG: xau:Xaut_2276 extracellular solute-binding protein family 1; extracellular solute-binding protein 607622..608407 Burkholderia ambifaria MC40-6 6182065 YP_001816036.1 CDS BamMC406_6047 NC_010557.1 608492 610450 R TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: phosphoesterase PA-phosphatase related; KEGG: bam:Bamb_6344 autotransporter-associated beta strand repeat protein; beta strand repeat-containing protein complement(608492..610450) Burkholderia ambifaria MC40-6 6182066 YP_001816037.1 CDS BamMC406_6048 NC_010557.1 610689 612209 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bam:Bamb_6345 diguanylate cyclase; diguanylate cyclase complement(610689..612209) Burkholderia ambifaria MC40-6 6182067 YP_001816038.1 CDS BamMC406_6049 NC_010557.1 612427 613899 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_6346 succinate-semialdehyde dehydrogenase (NAD(P)(+)); aldehyde dehydrogenase complement(612427..613899) Burkholderia ambifaria MC40-6 6182068 YP_001816039.1 CDS BamMC406_6050 NC_010557.1 614010 614501 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_6347 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(614010..614501) Burkholderia ambifaria MC40-6 6182069 YP_001816040.1 CDS BamMC406_6051 NC_010557.1 614588 615988 R PFAM: aminotransferase class-III; KEGG: bam:Bamb_6348 hypothetical protein; hypothetical protein complement(614588..615988) Burkholderia ambifaria MC40-6 6182070 YP_001816041.1 CDS BamMC406_6052 NC_010557.1 615985 616113 R hypothetical protein complement(615985..616113) Burkholderia ambifaria MC40-6 6182071 YP_001816042.1 CDS BamMC406_6053 NC_010557.1 616150 617076 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_6349 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(616150..617076) Burkholderia ambifaria MC40-6 6182072 YP_001816043.1 CDS BamMC406_6054 NC_010557.1 617089 617949 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_6350 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(617089..617949) Burkholderia ambifaria MC40-6 6182073 YP_001816044.1 CDS BamMC406_6055 NC_010557.1 618429 619097 D TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_6351 haloacid dehalogenase, type II; haloacid dehalogenase 618429..619097 Burkholderia ambifaria MC40-6 6182074 YP_001816045.1 CDS BamMC406_6056 NC_010557.1 619270 620808 D PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bam:Bamb_6352 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 619270..620808 Burkholderia ambifaria MC40-6 6182075 YP_001816046.1 CDS BamMC406_6057 NC_010557.1 621502 623085 D PFAM: extracellular solute-binding protein family 5; KEGG: bam:Bamb_6354 extracellular solute-binding protein, family 5; extracellular solute-binding protein 621502..623085 Burkholderia ambifaria MC40-6 6182076 YP_001816047.1 CDS BamMC406_6058 NC_010557.1 623165 624118 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_6355 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 623165..624118 Burkholderia ambifaria MC40-6 6182077 YP_001816048.1 CDS BamMC406_6059 NC_010557.1 624149 625105 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bvi:Bcep1808_6416 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 624149..625105 Burkholderia ambifaria MC40-6 6182078 YP_001816049.1 CDS BamMC406_6060 NC_010557.1 625105 626970 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_6357 ABC transporter related; ABC transporter 625105..626970 Burkholderia ambifaria MC40-6 6182079 YP_001816050.1 CDS BamMC406_6061 NC_010557.1 627167 628444 D PFAM: FAD dependent oxidoreductase; KEGG: bch:Bcen2424_6675 FAD dependent oxidoreductase; FAD dependent oxidoreductase 627167..628444 Burkholderia ambifaria MC40-6 6182080 YP_001816051.1 CDS BamMC406_6062 NC_010557.1 628530 628985 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_6359 transcriptional regulator, AraC family; AraC family transcriptional regulator 628530..628985 Burkholderia ambifaria MC40-6 6182081 YP_001816052.1 CDS BamMC406_6063 NC_010557.1 629106 629840 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: bch:Bcen2424_6673 protein of unknown function DUF861, cupin_3; hypothetical protein 629106..629840 Burkholderia ambifaria MC40-6 6182082 YP_001816053.1 CDS BamMC406_6064 NC_010557.1 629843 631168 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_6361 FAD dependent oxidoreductase; FAD dependent oxidoreductase 629843..631168 Burkholderia ambifaria MC40-6 6182083 YP_001816054.1 CDS BamMC406_6065 NC_010557.1 631258 632583 D PFAM: FAD dependent oxidoreductase; KEGG: bam:Bamb_6362 FAD dependent oxidoreductase; FAD dependent oxidoreductase 631258..632583 Burkholderia ambifaria MC40-6 6182084 YP_001816055.1 CDS BamMC406_6066 NC_010557.1 632580 634049 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_6363 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 632580..634049 Burkholderia ambifaria MC40-6 6182017 YP_001816056.1 CDS BamMC406_6067 NC_010557.1 634081 635268 D KEGG: bam:Bamb_6364 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 634081..635268 Burkholderia ambifaria MC40-6 6182018 YP_001816057.1 CDS BamMC406_6068 NC_010557.1 635439 636341 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_6365 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 635439..636341 Burkholderia ambifaria MC40-6 6182019 YP_001816058.1 CDS BamMC406_6069 NC_010557.1 636373 638592 R SMART: LamG domain protein jellyroll fold domain protein; KEGG: bam:Bamb_6366 putative transmembrane protein; LamG domain-containing protein complement(636373..638592) Burkholderia ambifaria MC40-6 6182020 YP_001816059.1 CDS BamMC406_6070 NC_010557.1 639300 641489 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bam:Bamb_6367 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 639300..641489 Burkholderia ambifaria MC40-6 6182021 YP_001816060.1 CDS BamMC406_6071 NC_010557.1 641514 642329 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bam:Bamb_6368 two component transcriptional regulator, AraC family; two component AraC family transcriptional regulator complement(641514..642329) Burkholderia ambifaria MC40-6 6182022 YP_001816061.1 CDS BamMC406_6072 NC_010557.1 643237 646614 D PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bvi:Bcep1808_6367 YadA C-terminal domain protein; YadA domain-containing protein 643237..646614 Burkholderia ambifaria MC40-6 6182023 YP_001816062.1 CDS BamMC406_6073 NC_010557.1 646730 648103 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_6370 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein complement(646730..648103) Burkholderia ambifaria MC40-6 6182024 YP_001816063.1 CDS BamMC406_6074 NC_010557.1 648284 659488 R KEGG: bam:Bamb_6371 hypothetical protein; hypothetical protein complement(648284..659488) Burkholderia ambifaria MC40-6 6182025 YP_001816064.1 CDS BamMC406_6075 NC_010557.1 659578 661002 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_6372 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein complement(659578..661002) Burkholderia ambifaria MC40-6 6182026 YP_001816065.1 CDS BamMC406_6076 NC_010557.1 660986 663187 R KEGG: bam:Bamb_6373 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase complement(660986..663187) Burkholderia ambifaria MC40-6 6182027 YP_001816066.1 CDS BamMC406_6077 NC_010557.1 663695 664936 R PFAM: Citrate synthase; KEGG: bam:Bamb_6374 citrate synthase; citrate synthase complement(663695..664936) Burkholderia ambifaria MC40-6 6182028 YP_001816067.1 CDS BamMC406_6078 NC_010557.1 664997 665389 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_6375 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(664997..665389) Burkholderia ambifaria MC40-6 6182029 YP_001816068.1 CDS BamMC406_6079 NC_010557.1 665448 666689 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6376 major facilitator superfamily MFS_1; major facilitator transporter complement(665448..666689) Burkholderia ambifaria MC40-6 6182030 YP_001816069.1 CDS BamMC406_6080 NC_010557.1 666831 667589 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_6377 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(666831..667589) Burkholderia ambifaria MC40-6 6182031 YP_001816070.1 CDS BamMC406_6081 NC_010557.1 667904 668866 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bam:Bamb_6378 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 667904..668866 Burkholderia ambifaria MC40-6 6182032 YP_001816071.1 CDS BamMC406_6082 NC_010557.1 669487 671607 D KEGG: bam:Bamb_6380 putative outer membrane protein; putative outer membrane protein 669487..671607 Burkholderia ambifaria MC40-6 6182033 YP_001816072.1 CDS BamMC406_6083 NC_010557.1 671660 672874 D KEGG: bam:Bamb_6381 family S53 non-peptidase; hypothetical protein 671660..672874 Burkholderia ambifaria MC40-6 6182034 YP_001816073.1 CDS BamMC406_6084 NC_010557.1 673390 673689 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bam:Bamb_6382 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 673390..673689 Burkholderia ambifaria MC40-6 6182035 YP_001816074.1 CDS BamMC406_6085 NC_010557.1 673712 673921 D KEGG: bam:Bamb_6383 hypothetical protein; hypothetical protein 673712..673921 Burkholderia ambifaria MC40-6 6182036 YP_001816075.1 CDS BamMC406_6086 NC_010557.1 673934 674137 D hypothetical protein 673934..674137 Burkholderia ambifaria MC40-6 6182037 YP_001816076.1 CDS BamMC406_6087 NC_010557.1 674203 674658 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_6384 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase complement(674203..674658) Burkholderia ambifaria MC40-6 6182038 YP_001816077.1 CDS BamMC406_6088 NC_010557.1 674684 675100 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: bam:Bamb_6385 cupin 2, conserved barrel domain protein; cupin complement(674684..675100) Burkholderia ambifaria MC40-6 6182199 YP_001816078.1 CDS BamMC406_6089 NC_010557.1 675220 676632 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_6386 transcriptional regulator, GntR family; transcriptional regulator complement(675220..676632) Burkholderia ambifaria MC40-6 6182200 YP_001816079.1 CDS BamMC406_6090 NC_010557.1 676744 677436 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bam:Bamb_6387 metal-dependent phosphohydrolase, HD subdomain; metal dependent phosphohydrolase 676744..677436 Burkholderia ambifaria MC40-6 6182201 YP_001816080.1 CDS BamMC406_6091 NC_010557.1 677749 678189 D PFAM: heat shock protein Hsp20; KEGG: bam:Bamb_6388 heat shock protein HSP20; heat shock protein Hsp20 677749..678189 Burkholderia ambifaria MC40-6 6182202 YP_001816081.1 CDS BamMC406_6092 NC_010557.1 678205 678612 D PFAM: heat shock protein Hsp20; KEGG: bam:Bamb_6389 heat shock protein HSP20; heat shock protein Hsp20 678205..678612 Burkholderia ambifaria MC40-6 6182203 YP_001816082.1 CDS BamMC406_6093 NC_010557.1 678709 679272 D PFAM: heat shock protein Hsp20; KEGG: bam:Bamb_6390 heat shock protein HSP20; heat shock protein Hsp20 678709..679272 Burkholderia ambifaria MC40-6 6182204 YP_001816083.1 CDS BamMC406_6094 NC_010557.1 679309 679563 R KEGG: bam:Bamb_6391 hypothetical protein; hypothetical protein complement(679309..679563) Burkholderia ambifaria MC40-6 6182205 YP_001816084.1 CDS BamMC406_6095 NC_010557.1 679656 680708 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_4247 transposase, IS605 OrfB family; IS605 family transposase OrfB 679656..680708 Burkholderia ambifaria MC40-6 6182206 YP_001816085.1 CDS groEL NC_010557.1 680831 682453 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; chaperonin GroEL complement(680831..682453) Burkholderia ambifaria MC40-6 6182207 YP_001816086.1 CDS BamMC406_6097 NC_010557.1 682531 682848 R PFAM: chaperonin Cpn10; KEGG: bam:Bamb_6393 chaperonin Cpn10; chaperonin Cpn10 complement(682531..682848) Burkholderia ambifaria MC40-6 6182208 YP_001816087.1 CDS BamMC406_6098 NC_010557.1 683020 683658 R KEGG: bam:Bamb_6394 hypothetical protein; hypothetical protein complement(683020..683658) Burkholderia ambifaria MC40-6 6182209 YP_001816088.1 CDS BamMC406_6100 NC_010557.1 684281 684517 D KEGG: bam:Bamb_6395 hypothetical protein; hypothetical protein 684281..684517 Burkholderia ambifaria MC40-6 6182395 YP_001816089.1 CDS BamMC406_6101 NC_010557.1 684663 684905 D KEGG: bch:Bcen2424_6656 hypothetical protein; hypothetical protein 684663..684905 Burkholderia ambifaria MC40-6 6182211 YP_001816090.1 CDS BamMC406_6102 NC_010557.1 685120 685359 D KEGG: bam:Bamb_6397 hypothetical protein; hypothetical protein 685120..685359 Burkholderia ambifaria MC40-6 6182212 YP_001816091.1 CDS BamMC406_6103 NC_010557.1 685422 685637 D KEGG: bam:Bamb_6398 hypothetical protein; hypothetical protein 685422..685637 Burkholderia ambifaria MC40-6 6182213 YP_001816092.1 CDS BamMC406_6104 NC_010557.1 685687 685998 R KEGG: bam:Bamb_6399 hypothetical protein; hypothetical protein complement(685687..685998) Burkholderia ambifaria MC40-6 6182214 YP_001816093.1 CDS BamMC406_6105 NC_010557.1 686068 686304 R KEGG: bam:Bamb_6400 hypothetical protein; hypothetical protein complement(686068..686304) Burkholderia ambifaria MC40-6 6182215 YP_001816094.1 CDS BamMC406_6106 NC_010557.1 686830 687144 R KEGG: bam:Bamb_6401 hypothetical protein; hypothetical protein complement(686830..687144) Burkholderia ambifaria MC40-6 6182216 YP_001816095.1 CDS BamMC406_6108 NC_010557.1 687760 688086 D KEGG: bam:Bamb_6403 hypothetical protein; hypothetical protein 687760..688086 Burkholderia ambifaria MC40-6 6182396 YP_001816096.1 CDS BamMC406_6109 NC_010557.1 688086 688616 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_6404 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 688086..688616 Burkholderia ambifaria MC40-6 6182218 YP_001816097.1 CDS BamMC406_6110 NC_010557.1 689064 690173 D PFAM: Extracellular ligand-binding receptor; KEGG: bpd:BURPS668_3831 putative amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 689064..690173 Burkholderia ambifaria MC40-6 6182219 YP_001816098.1 CDS BamMC406_6111 NC_010557.1 690765 691946 D PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_1376 aminotransferase, class I and II; class I and II aminotransferase 690765..691946 Burkholderia ambifaria MC40-6 6182220 YP_001816099.1 CDS BamMC406_6112 NC_010557.1 691986 692936 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_2544 inner-membrane translocator; inner-membrane translocator 691986..692936 Burkholderia ambifaria MC40-6 6182221 YP_001816100.1 CDS BamMC406_6113 NC_010557.1 692956 694125 D PFAM: inner-membrane translocator; KEGG: bam:Bamb_2543 inner-membrane translocator; inner-membrane translocator 692956..694125 Burkholderia ambifaria MC40-6 6182315 YP_001816101.1 CDS BamMC406_6114 NC_010557.1 694147 694920 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2542 ABC transporter related; ABC transporter 694147..694920 Burkholderia ambifaria MC40-6 6182316 YP_001816102.1 CDS BamMC406_6115 NC_010557.1 694920 695636 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_2541 ABC transporter related; ABC transporter 694920..695636 Burkholderia ambifaria MC40-6 6182317 YP_001816103.1 CDS BamMC406_6116 NC_010557.1 695963 697195 D PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_03456 hypothetical protein; MarR family transcriptional regulator 695963..697195 Burkholderia ambifaria MC40-6 6182318 YP_001816104.1 CDS BamMC406_6117 NC_010557.1 697585 699039 R PFAM: Amidase; KEGG: bam:Bamb_6405 amidase; amidase complement(697585..699039) Burkholderia ambifaria MC40-6 6182319 YP_001816105.1 CDS BamMC406_6118 NC_010557.1 699076 700305 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_6406 major facilitator superfamily MFS_1; major facilitator transporter complement(699076..700305) Burkholderia ambifaria MC40-6 6182320 YP_001816106.1 CDS BamMC406_6119 NC_010557.1 700328 701266 R KEGG: bam:Bamb_6407 hypothetical protein; hypothetical protein complement(700328..701266) Burkholderia ambifaria MC40-6 6182321 YP_001816107.1 CDS BamMC406_6120 NC_010557.1 701345 702373 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_6408 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(701345..702373) Burkholderia ambifaria MC40-6 6182322 YP_001816108.1 CDS BamMC406_6121 NC_010557.1 702640 703509 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bam:Bamb_6409 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(702640..703509) Burkholderia ambifaria MC40-6 6182323 YP_001816109.1 CDS BamMC406_6122 NC_010557.1 703839 704903 D KEGG: bam:Bamb_6410 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase 703839..704903 Burkholderia ambifaria MC40-6 6182324 YP_001816110.1 CDS BamMC406_6123 NC_010557.1 705122 706603 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_6411 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 705122..706603 Burkholderia ambifaria MC40-6 6182325 YP_001816111.1 CDS BamMC406_6124 NC_010557.1 706808 707344 D KEGG: bam:Bamb_6412 hypothetical protein; hypothetical protein 706808..707344 Burkholderia ambifaria MC40-6 6182326 YP_001816112.1 CDS BamMC406_6125 NC_010557.1 707358 707927 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: bam:Bamb_6413 thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate binding domain-containing protein 707358..707927 Burkholderia ambifaria MC40-6 6182327 YP_001816113.1 CDS BamMC406_6126 NC_010557.1 708091 709800 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: bam:Bamb_6414 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 708091..709800 Burkholderia ambifaria MC40-6 6182328 YP_001816114.1 CDS BamMC406_6127 NC_010557.1 709748 710632 R PFAM: HpcH/HpaI aldolase; KEGG: bam:Bamb_6415 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(709748..710632) Burkholderia ambifaria MC40-6 6182329 YP_001816115.1 CDS BamMC406_6128 NC_010557.1 710652 711068 R PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_6416 hypothetical protein; thioesterase superfamily protein complement(710652..711068) Burkholderia ambifaria MC40-6 6182330 YP_001816116.1 CDS BamMC406_6129 NC_010557.1 711089 712345 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_6417 formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F complement(711089..712345) Burkholderia ambifaria MC40-6 6182331 YP_001816117.1 CDS BamMC406_6130 NC_010557.1 712468 713370 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6418 transcriptional regulator, LysR family; LysR family transcriptional regulator 712468..713370 Burkholderia ambifaria MC40-6 6182332 YP_001816118.1 CDS BamMC406_6131 NC_010557.1 713503 714435 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_5947 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(713503..714435) Burkholderia ambifaria MC40-6 6182333 YP_001816119.1 CDS BamMC406_6132 NC_010557.1 714578 715789 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_6420 major facilitator superfamily MFS_1; major facilitator transporter 714578..715789 Burkholderia ambifaria MC40-6 6182334 YP_001816120.1 CDS BamMC406_6133 NC_010557.1 715795 716691 D KEGG: bam:Bamb_6421 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 715795..716691 Burkholderia ambifaria MC40-6 6182335 YP_001816121.1 CDS BamMC406_6134 NC_010557.1 717009 718673 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6422 major facilitator superfamily MFS_1; major facilitator transporter 717009..718673 Burkholderia ambifaria MC40-6 6182336 YP_001816122.1 CDS BamMC406_6135 NC_010557.1 718813 719517 D TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_6423 haloacid dehalogenase, type II; haloacid dehalogenase 718813..719517 Burkholderia ambifaria MC40-6 6182337 YP_001816123.1 CDS BamMC406_6136 NC_010557.1 719719 720663 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6424 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(719719..720663) Burkholderia ambifaria MC40-6 6182293 YP_001816124.1 CDS BamMC406_6137 NC_010557.1 720997 722223 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bam:Bamb_6425 diaminopropionate ammonia-lyase; diaminopropionate ammonia-lyase 720997..722223 Burkholderia ambifaria MC40-6 6182294 YP_001816125.1 CDS BamMC406_6138 NC_010557.1 722460 722921 D PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_6426 endoribonuclease L-PSP; endoribonuclease L-PSP 722460..722921 Burkholderia ambifaria MC40-6 6182295 YP_001816126.1 CDS BamMC406_6139 NC_010557.1 723039 724355 D PFAM: sodium:dicarboxylate symporter; KEGG: bam:Bamb_6427 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 723039..724355 Burkholderia ambifaria MC40-6 6182296 YP_001816127.1 CDS BamMC406_6140 NC_010557.1 724454 725359 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6428 transcriptional regulator, LysR family; LysR family transcriptional regulator 724454..725359 Burkholderia ambifaria MC40-6 6182297 YP_001816128.1 CDS BamMC406_6141 NC_010557.1 725608 726225 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: bam:Bamb_6429 aspartate racemase; aspartate racemase 725608..726225 Burkholderia ambifaria MC40-6 6182298 YP_001816129.1 CDS BamMC406_6142 NC_010557.1 726498 726962 R PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C6642 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(726498..726962) Burkholderia ambifaria MC40-6 6182299 YP_001816130.1 CDS BamMC406_6143 NC_010557.1 727445 727765 D KEGG: bam:Bamb_6430 hypothetical protein; hypothetical protein 727445..727765 Burkholderia ambifaria MC40-6 6182300 YP_001816131.1 CDS BamMC406_6144 NC_010557.1 728230 729486 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bam:Bamb_6437 hypothetical protein; hypothetical protein complement(728230..729486) Burkholderia ambifaria MC40-6 6182301 YP_001816132.1 CDS BamMC406_6145 NC_010557.1 729546 730895 R TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bam:Bamb_6438 glutathione-disulfide reductase; glutathione-disulfide reductase complement(729546..730895) Burkholderia ambifaria MC40-6 6182302 YP_001816133.1 CDS BamMC406_6146 NC_010557.1 730892 731800 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bam:Bamb_6439 protein of unknown function DUF6, transmembrane; hypothetical protein complement(730892..731800) Burkholderia ambifaria MC40-6 6182303 YP_001816134.1 CDS BamMC406_6147 NC_010557.1 731856 732773 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bam:Bamb_6440 cysteine synthase A; cysteine synthase A complement(731856..732773) Burkholderia ambifaria MC40-6 6182304 YP_001816135.1 CDS BamMC406_6148 NC_010557.1 732824 733855 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_6441 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(732824..733855) Burkholderia ambifaria MC40-6 6182305 YP_001816136.1 CDS BamMC406_6149 NC_010557.1 734015 734767 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_6442 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(734015..734767) Burkholderia ambifaria MC40-6 6182306 YP_001816137.1 CDS BamMC406_6150 NC_010557.1 734809 736035 R PFAM: OsmC family protein; KEGG: bam:Bamb_6443 OsmC family protein; OsmC family protein complement(734809..736035) Burkholderia ambifaria MC40-6 6182307 YP_001816138.1 CDS BamMC406_6151 NC_010557.1 736046 737209 R PFAM: amine oxidase; KEGG: bam:Bamb_6444 amine oxidase; amine oxidase complement(736046..737209) Burkholderia ambifaria MC40-6 6182308 YP_001816139.1 CDS BamMC406_6152 NC_010557.1 737212 737880 R KEGG: bam:Bamb_6445 anti-ECFsigma factor, ChrR; anti-ECFsigma factor ChrR complement(737212..737880) Burkholderia ambifaria MC40-6 6182309 YP_001816140.1 CDS BamMC406_6153 NC_010557.1 737958 738302 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_6446 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase complement(737958..738302) Burkholderia ambifaria MC40-6 6182310 YP_001816141.1 CDS BamMC406_6154 NC_010557.1 738363 738644 R KEGG: bam:Bamb_6447 hypothetical protein; hypothetical protein complement(738363..738644) Burkholderia ambifaria MC40-6 6182311 YP_001816142.1 CDS BamMC406_6155 NC_010557.1 738709 739482 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_6448 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(738709..739482) Burkholderia ambifaria MC40-6 6182312 YP_001816143.1 CDS BamMC406_6156 NC_010557.1 739791 740717 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6449 transcriptional regulator, LysR family; LysR family transcriptional regulator 739791..740717 Burkholderia ambifaria MC40-6 6182313 YP_001816144.1 CDS BamMC406_6157 NC_010557.1 740790 741362 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_6450 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(740790..741362) Burkholderia ambifaria MC40-6 6182314 YP_001816145.1 CDS BamMC406_6158 NC_010557.1 741477 742364 D KEGG: bam:Bamb_6451 peptidase S15; peptidase S15 741477..742364 Burkholderia ambifaria MC40-6 6182577 YP_001816146.1 CDS BamMC406_6159 NC_010557.1 742382 743209 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_6452 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 742382..743209 Burkholderia ambifaria MC40-6 6182578 YP_001816147.1 CDS BamMC406_6160 NC_010557.1 743632 744180 D PFAM: OsmC family protein; KEGG: bam:Bamb_6453 OsmC family protein; OsmC family protein 743632..744180 Burkholderia ambifaria MC40-6 6182579 YP_001816148.1 CDS BamMC406_6161 NC_010557.1 744268 745146 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: bam:Bamb_6454 phenazine biosynthesis protein PhzF family; PhzF family phenazine biosynthesis protein 744268..745146 Burkholderia ambifaria MC40-6 6182580 YP_001816149.1 CDS BamMC406_6162 NC_010557.1 745395 745925 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_6455 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 745395..745925 Burkholderia ambifaria MC40-6 6182581 YP_001816150.1 CDS BamMC406_6163 NC_010557.1 745953 746831 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6456 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(745953..746831) Burkholderia ambifaria MC40-6 6182582 YP_001816151.1 CDS BamMC406_6164 NC_010557.1 746958 748391 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 746958..748391 Burkholderia ambifaria MC40-6 6182583 YP_001816152.1 CDS BamMC406_6165 NC_010557.1 748385 749278 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_6458 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 748385..749278 Burkholderia ambifaria MC40-6 6182584 YP_001816153.1 CDS BamMC406_6166 NC_010557.1 749275 750078 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_6459 ABC transporter related; ABC transporter 749275..750078 Burkholderia ambifaria MC40-6 6182585 YP_001816154.1 CDS BamMC406_6167 NC_010557.1 750159 750992 D PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6460 extracellular solute-binding protein, family 3; extracellular solute-binding protein 750159..750992 Burkholderia ambifaria MC40-6 6182586 YP_001816155.1 CDS BamMC406_6168 NC_010557.1 751000 751872 D PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_6461 polysaccharide deacetylase; polysaccharide deacetylase 751000..751872 Burkholderia ambifaria MC40-6 6182587 YP_001816156.1 CDS BamMC406_6169 NC_010557.1 751869 752777 D PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_6462 polysaccharide deacetylase; polysaccharide deacetylase 751869..752777 Burkholderia ambifaria MC40-6 6182588 YP_001816157.1 CDS BamMC406_6170 NC_010557.1 752774 754150 D PFAM: MmgE/PrpD family protein; KEGG: bam:Bamb_6463 MmgE/PrpD family protein; MmgE/PrpD family protein 752774..754150 Burkholderia ambifaria MC40-6 6182589 YP_001816158.1 CDS BamMC406_6171 NC_010557.1 754602 758978 D TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_6464 outer membrane autotransporter barrel domain; outer membrane autotransporter 754602..758978 Burkholderia ambifaria MC40-6 6182590 YP_001816159.1 CDS BamMC406_6172 NC_010557.1 759639 761267 D PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bxe:Bxe_B2628 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 759639..761267 Burkholderia ambifaria MC40-6 6182591 YP_001816160.1 CDS BamMC406_6173 NC_010557.1 761948 764461 D KEGG: bvi:Bcep1808_5674 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 761948..764461 Burkholderia ambifaria MC40-6 6182592 YP_001816161.1 CDS BamMC406_6174 NC_010557.1 764676 765242 D KEGG: bte:BTH_II1776 hypothetical protein; hypothetical protein 764676..765242 Burkholderia ambifaria MC40-6 6182593 YP_001816162.1 CDS BamMC406_6175 NC_010557.1 765244 765675 D hypothetical protein 765244..765675 Burkholderia ambifaria MC40-6 6182594 YP_001816163.1 CDS BamMC406_6176 NC_010557.1 766099 766539 D hypothetical protein 766099..766539 Burkholderia ambifaria MC40-6 6182595 YP_001816164.1 CDS BamMC406_6177 NC_010557.1 766536 766985 D PFAM: CBS domain containing protein; KEGG: bmu:Bmul_5931 CBS domain containing protein; hypothetical protein 766536..766985 Burkholderia ambifaria MC40-6 6182596 YP_001816165.1 CDS BamMC406_6178 NC_010557.1 767103 767543 D KEGG: bmu:Bmul_5928 hypothetical protein; hypothetical protein 767103..767543 Burkholderia ambifaria MC40-6 6182597 YP_001816166.1 CDS BamMC406_6179 NC_010557.1 767622 768998 D TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: bmu:Bmul_5927 nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase 767622..768998 Burkholderia ambifaria MC40-6 6182598 YP_001816167.1 CDS BamMC406_6180 NC_010557.1 768995 769201 D KEGG: bmu:Bmul_5924 hypothetical protein; hypothetical protein 768995..769201 Burkholderia ambifaria MC40-6 6182599 YP_001816168.1 CDS BamMC406_6181 NC_010557.1 769467 771200 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmu:Bmul_5923 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 769467..771200 Burkholderia ambifaria MC40-6 6182422 YP_001816169.1 CDS BamMC406_6182 NC_010557.1 771246 772589 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmu:Bmul_5922 ABC transporter related; ABC transporter 771246..772589 Burkholderia ambifaria MC40-6 6182423 YP_001816170.1 CDS BamMC406_6183 NC_010557.1 772706 774250 R KEGG: bmu:Bmul_5918 hypothetical protein; hypothetical protein complement(772706..774250) Burkholderia ambifaria MC40-6 6182424 YP_001816171.1 CDS BamMC406_6184 NC_010557.1 774688 775128 D KEGG: bmu:Bmul_5917 hypothetical protein; hypothetical protein 774688..775128 Burkholderia ambifaria MC40-6 6182425 YP_001816172.1 CDS BamMC406_6185 NC_010557.1 775376 775849 D PFAM: UspA domain protein; KEGG: bmu:Bmul_5916 UspA domain protein; UspA domain-containing protein 775376..775849 Burkholderia ambifaria MC40-6 6182426 YP_001816173.1 CDS BamMC406_6186 NC_010557.1 775860 776159 D KEGG: bmu:Bmul_5915 periplasmic protein of unknown function, DUF1488; hypothetical protein 775860..776159 Burkholderia ambifaria MC40-6 6182427 YP_001816174.1 CDS BamMC406_6187 NC_010557.1 776338 776772 D PFAM: heat shock protein Hsp20; KEGG: bmu:Bmul_5914 heat shock protein HSP20; heat shock protein Hsp20 776338..776772 Burkholderia ambifaria MC40-6 6182428 YP_001816175.1 CDS BamMC406_6188 NC_010557.1 776877 777542 R KEGG: bmu:Bmul_5913 hypothetical protein; hypothetical protein complement(776877..777542) Burkholderia ambifaria MC40-6 6182429 YP_001816176.1 CDS BamMC406_6189 NC_010557.1 777773 778423 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bmu:Bmul_5912 transport-associated protein; transport-associated 777773..778423 Burkholderia ambifaria MC40-6 6182430 YP_001816177.1 CDS BamMC406_6190 NC_010557.1 778477 778716 D KEGG: bmu:Bmul_5911 hypothetical protein; hypothetical protein 778477..778716 Burkholderia ambifaria MC40-6 6182431 YP_001816178.1 CDS BamMC406_6191 NC_010557.1 778746 778961 R KEGG: bmu:Bmul_5909 hypothetical protein; hypothetical protein complement(778746..778961) Burkholderia ambifaria MC40-6 6182432 YP_001816179.1 CDS BamMC406_6192 NC_010557.1 779100 780128 R PFAM: conserved hypothetical protein; KEGG: bmu:Bmul_5908 hypothetical protein; hypothetical protein complement(779100..780128) Burkholderia ambifaria MC40-6 6182433 YP_001816180.1 CDS BamMC406_6193 NC_010557.1 780151 780486 R KEGG: bvi:Bcep1808_6341 cytochrome c, class I; cytochrome c, class I complement(780151..780486) Burkholderia ambifaria MC40-6 6182434 YP_001816181.1 CDS BamMC406_6194 NC_010557.1 780506 781513 R KEGG: bmu:Bmul_5906 hypothetical protein; hypothetical protein complement(780506..781513) Burkholderia ambifaria MC40-6 6182435 YP_001816182.1 CDS BamMC406_6195 NC_010557.1 781833 782606 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bam:Bamb_3812 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(781833..782606) Burkholderia ambifaria MC40-6 6182436 YP_001816183.1 CDS BamMC406_6196 NC_010557.1 783070 783717 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bmu:Bmul_5903 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(783070..783717) Burkholderia ambifaria MC40-6 6182437 YP_001816184.1 CDS BamMC406_6197 NC_010557.1 783714 785711 R KEGG: bmu:Bmul_5902 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(783714..785711) Burkholderia ambifaria MC40-6 6182438 YP_001816185.1 CDS BamMC406_6198 NC_010557.1 785959 786429 D PFAM: UspA domain protein; KEGG: bvi:Bcep1808_6336 UspA domain protein; UspA domain-containing protein 785959..786429 Burkholderia ambifaria MC40-6 6182439 YP_001816186.1 CDS BamMC406_6199 NC_010557.1 786481 787314 R PFAM: UspA domain protein; KEGG: bam:Bamb_3814 UspA domain protein; UspA domain-containing protein complement(786481..787314) Burkholderia ambifaria MC40-6 6182440 YP_001816187.1 CDS BamMC406_6200 NC_010557.1 787311 787802 R PFAM: UspA domain protein; KEGG: bam:Bamb_3815 UspA domain protein; UspA domain-containing protein complement(787311..787802) Burkholderia ambifaria MC40-6 6182441 YP_001816188.1 CDS BamMC406_6201 NC_010557.1 787872 788009 R hypothetical protein complement(787872..788009) Burkholderia ambifaria MC40-6 6182442 YP_001816189.1 CDS BamMC406_6202 NC_010557.1 788021 789433 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bam:Bamb_6526 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(788021..789433) Burkholderia ambifaria MC40-6 6182443 YP_001816190.1 CDS BamMC406_6203 NC_010557.1 789710 789871 D KEGG: bmu:Bmul_5890 hypothetical protein; hypothetical protein 789710..789871 Burkholderia ambifaria MC40-6 6182444 YP_001816191.1 CDS BamMC406_6204 NC_010557.1 789936 790121 R KEGG: bam:Bamb_3823 hypothetical protein; hypothetical protein complement(789936..790121) Burkholderia ambifaria MC40-6 6181995 YP_001816192.1 CDS BamMC406_6205 NC_010557.1 790280 791404 R PFAM: ABC-2 type transporter; KEGG: bmu:Bmul_5884 ABC-2 type transporter; ABC-2 type transporter complement(790280..791404) Burkholderia ambifaria MC40-6 6181996 YP_001816193.1 CDS BamMC406_6206 NC_010557.1 791407 794217 R PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: bmu:Bmul_5883 ABC transporter related; ABC transporter complement(791407..794217) Burkholderia ambifaria MC40-6 6181997 YP_001816194.1 CDS BamMC406_6207 NC_010557.1 794214 795287 R PFAM: secretion protein HlyD family protein; KEGG: bmu:Bmul_5882 secretion protein HlyD family protein; secretion protein HlyD family protein complement(794214..795287) Burkholderia ambifaria MC40-6 6181998 YP_001816195.1 CDS BamMC406_6208 NC_010557.1 795284 796777 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bmu:Bmul_5881 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(795284..796777) Burkholderia ambifaria MC40-6 6181999 YP_001816196.1 CDS BamMC406_6209 NC_010557.1 797025 797672 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bmu:Bmul_5879 transport-associated protein; transport-associated 797025..797672 Burkholderia ambifaria MC40-6 6182000 YP_001816197.1 CDS BamMC406_6210 NC_010557.1 797712 798221 D KEGG: bvi:Bcep1808_6312 hypothetical protein; hypothetical protein 797712..798221 Burkholderia ambifaria MC40-6 6182001 YP_001816198.1 CDS BamMC406_6211 NC_010557.1 798255 800162 D KEGG: bmu:Bmul_5877 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 798255..800162 Burkholderia ambifaria MC40-6 6182002 YP_001816199.1 CDS BamMC406_6212 NC_010557.1 800218 802014 R class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides; ribonucleotide reductase-like protein complement(800218..802014) Burkholderia ambifaria MC40-6 6182003 YP_001816200.1 CDS BamMC406_6213 NC_010557.1 802211 803146 D TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: bmu:Bmul_5875 1-phosphofructokinase; 1-phosphofructokinase 802211..803146 Burkholderia ambifaria MC40-6 6182004 YP_001816201.1 CDS BamMC406_6214 NC_010557.1 803265 804059 D PFAM: polysaccharide deacetylase; KEGG: bmu:Bmul_5874 polysaccharide deacetylase; polysaccharide deacetylase 803265..804059 Burkholderia ambifaria MC40-6 6182005 YP_001816202.1 CDS BamMC406_6215 NC_010557.1 804052 805308 D KEGG: bmu:Bmul_5873 hypothetical protein; hypothetical protein 804052..805308 Burkholderia ambifaria MC40-6 6182006 YP_001816203.1 CDS BamMC406_6216 NC_010557.1 805387 805542 D KEGG: reu:Reut_A1221 hypothetical protein; hypothetical protein 805387..805542 Burkholderia ambifaria MC40-6 6182007 YP_001816204.1 CDS BamMC406_6217 NC_010557.1 805801 806277 D KEGG: bmu:Bmul_5871 hypothetical protein; hypothetical protein 805801..806277 Burkholderia ambifaria MC40-6 6182008 YP_001816205.1 CDS BamMC406_6218 NC_010557.1 806388 808766 D PFAM: beta-lactamase; conserved hypothetical protein; KEGG: bmu:Bmul_5870 hypothetical protein; hypothetical protein 806388..808766 Burkholderia ambifaria MC40-6 6182009 YP_001816206.1 CDS BamMC406_6219 NC_010557.1 808791 809072 D PFAM: heat shock protein Hsp20; KEGG: bte:BTH_II0924 heat shock protein, family; heat shock protein Hsp20 808791..809072 Burkholderia ambifaria MC40-6 6182010 YP_001816207.1 CDS BamMC406_6220 NC_010557.1 809580 810272 D PFAM: CBS domain containing protein; transport-associated; KEGG: bxe:Bxe_A1873 hypothetical protein; signal-transduction protein 809580..810272 Burkholderia ambifaria MC40-6 6182011 YP_001816208.1 CDS BamMC406_6221 NC_010557.1 810627 811100 R KEGG: bvi:Bcep1808_6302 hypothetical protein; hypothetical protein complement(810627..811100) Burkholderia ambifaria MC40-6 6182012 YP_001816209.1 CDS BamMC406_6222 NC_010557.1 811239 811724 R KEGG: bte:BTH_II0065 CreA protein, putative; CreA protein complement(811239..811724) Burkholderia ambifaria MC40-6 6182013 YP_001816210.1 CDS BamMC406_6223 NC_010557.1 812010 812426 D PFAM: Domain of unknown function DUF1924; KEGG: bvi:Bcep1808_6301 cytochrome c, monohaem; hypothetical protein 812010..812426 Burkholderia ambifaria MC40-6 6182014 YP_001816211.1 CDS BamMC406_6224 NC_010557.1 812439 812945 D PFAM: multihaem cytochrome; KEGG: bmu:Bmul_5868 multihaem cytochrome; multiheme cytochrome 812439..812945 Burkholderia ambifaria MC40-6 6182015 YP_001816212.1 CDS BamMC406_6225 NC_010557.1 812911 813648 D PFAM: cytochrome B561; KEGG: bmu:Bmul_5867 cytochrome b561; cytochrome B561 812911..813648 Burkholderia ambifaria MC40-6 6182016 YP_001816213.1 CDS BamMC406_6226 NC_010557.1 813673 814338 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_5866 two component transcriptional regulator, winged helix family; two component transcriptional regulator 813673..814338 Burkholderia ambifaria MC40-6 6182361 YP_001816214.1 CDS BamMC406_6227 NC_010557.1 814335 815723 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bmu:Bmul_5865 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 814335..815723 Burkholderia ambifaria MC40-6 6182362 YP_001816215.1 CDS BamMC406_6228 NC_010557.1 815841 816233 R KEGG: bvi:Bcep1808_6297 hypothetical protein; hypothetical protein complement(815841..816233) Burkholderia ambifaria MC40-6 6182363 YP_001816216.1 CDS BamMC406_6229 NC_010557.1 816261 816377 R hypothetical protein complement(816261..816377) Burkholderia ambifaria MC40-6 6182364 YP_001816217.1 CDS BamMC406_6230 NC_010557.1 816444 816791 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bvi:Bcep1808_6296 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 816444..816791 Burkholderia ambifaria MC40-6 6182365 YP_001816218.1 CDS BamMC406_6231 NC_010557.1 816887 817786 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bvi:Bcep1808_6295 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 816887..817786 Burkholderia ambifaria MC40-6 6182366 YP_001816219.1 CDS BamMC406_6232 NC_010557.1 817837 818454 R KEGG: bmu:Bmul_5861 hypothetical protein; hypothetical protein complement(817837..818454) Burkholderia ambifaria MC40-6 6182367 YP_001816220.1 CDS BamMC406_6233 NC_010557.1 818762 820975 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; Hemerythrin HHE cation binding domain protein; KEGG: bvi:Bcep1808_6293 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 818762..820975 Burkholderia ambifaria MC40-6 6182368 YP_001816221.1 CDS BamMC406_6234 NC_010557.1 820988 821938 R PFAM: UspA domain protein; KEGG: bvi:Bcep1808_6292 UspA domain protein; UspA domain-containing protein complement(820988..821938) Burkholderia ambifaria MC40-6 6182369 YP_001816222.1 CDS BamMC406_6235 NC_010557.1 822237 822821 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bvi:Bcep1808_6291 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein complement(822237..822821) Burkholderia ambifaria MC40-6 6182370 YP_001816223.1 CDS BamMC406_6236 NC_010557.1 823647 825011 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_C7098 major facilitator superfamily (MFS_1) transporter; major facilitator transporter complement(823647..825011) Burkholderia ambifaria MC40-6 6182371 YP_001816224.1 CDS BamMC406_6237 NC_010557.1 825388 825558 R KEGG: bam:Bamb_6516 integrase, catalytic region; integrase, catalytic region complement(825388..825558) Burkholderia ambifaria MC40-6 6182372 YP_001816225.1 CDS BamMC406_6238 NC_010557.1 826116 826931 D PFAM: protein of unknown function DUF817; KEGG: atc:AGR_C_3514 hypothetical protein; hypothetical protein 826116..826931 Burkholderia ambifaria MC40-6 6182373 YP_001816226.1 CDS BamMC406_6239 NC_010557.1 827133 828056 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6523 transcriptional regulator, LysR family; LysR family transcriptional regulator 827133..828056 Burkholderia ambifaria MC40-6 6182374 YP_001816227.1 CDS BamMC406_6240 NC_010557.1 828171 829433 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_6524 major facilitator superfamily MFS_1; major facilitator transporter complement(828171..829433) Burkholderia ambifaria MC40-6 6182375 YP_001816228.1 CDS BamMC406_6242 NC_010557.1 830278 831183 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6527 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(830278..831183) Burkholderia ambifaria MC40-6 6182397 YP_001816229.1 CDS BamMC406_6243 NC_010557.1 831294 832244 D KEGG: bam:Bamb_6528 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 831294..832244 Burkholderia ambifaria MC40-6 6182377 YP_001816230.1 CDS BamMC406_6244 NC_010557.1 832241 832633 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_6529 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 832241..832633 Burkholderia ambifaria MC40-6 6182378 YP_001816231.1 CDS BamMC406_6245 NC_010557.1 832636 833094 D PFAM: MaoC domain protein dehydratase; KEGG: bam:Bamb_6530 MaoC domain protein dehydratase; dehydratase 832636..833094 Burkholderia ambifaria MC40-6 6182379 YP_001816232.1 CDS BamMC406_6246 NC_010557.1 833094 834317 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_6531 formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F 833094..834317 Burkholderia ambifaria MC40-6 6182380 YP_001816233.1 CDS BamMC406_6247 NC_010557.1 834314 835147 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: bam:Bamb_6532 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 834314..835147 Burkholderia ambifaria MC40-6 6182381 YP_001816234.1 CDS BamMC406_6248 NC_010557.1 835196 836083 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_6533 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(835196..836083) Burkholderia ambifaria MC40-6 6182382 YP_001816235.1 CDS BamMC406_6249 NC_010557.1 836080 837021 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_6534 ABC transporter related; ABC transporter complement(836080..837021) Burkholderia ambifaria MC40-6 6182383 YP_001816236.1 CDS BamMC406_6250 NC_010557.1 837146 838201 R KEGG: bam:Bamb_6535 ABC transporter substrate binding protein; ABC transporter substrate binding protein complement(837146..838201) Burkholderia ambifaria MC40-6 6182805 YP_001816237.1 CDS BamMC406_6251 NC_010557.1 838249 839175 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bam:Bamb_6536 taurine dioxygenase; taurine dioxygenase complement(838249..839175) Burkholderia ambifaria MC40-6 6182806 YP_001816238.1 CDS BamMC406_6252 NC_010557.1 839552 841744 D KEGG: bam:Bamb_6537 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase 839552..841744 Burkholderia ambifaria MC40-6 6182807 YP_001816239.1 CDS BamMC406_6253 NC_010557.1 841800 842510 R PFAM: MgtC/SapB transporter; KEGG: bam:Bamb_6538 MgtC/SapB transporter; MgtC/SapB transporter complement(841800..842510) Burkholderia ambifaria MC40-6 6182808 YP_001816240.1 CDS BamMC406_6254 NC_010557.1 842819 843103 D PFAM: helix-turn-helix domain protein; KEGG: bvi:Bcep1808_5885 helix-turn-helix domain protein; helix-turn-helix domain-containing protein 842819..843103 Burkholderia ambifaria MC40-6 6182809 YP_001816241.1 CDS BamMC406_6255 NC_010557.1 843093 844397 D TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bam:Bamb_6540 HipA domain protein; HipA domain-containing protein 843093..844397 Burkholderia ambifaria MC40-6 6182810 YP_001816242.1 CDS BamMC406_6256 NC_010557.1 844639 845883 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bam:Bamb_6542 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(844639..845883) Burkholderia ambifaria MC40-6 6182811 YP_001816243.1 CDS BamMC406_6257 NC_010557.1 845880 846533 R PFAM: nitrile hydratase beta subunit; KEGG: bam:Bamb_6543 nitrile hydratase; nitrile hydratase complement(845880..846533) Burkholderia ambifaria MC40-6 6182812 YP_001816244.1 CDS BamMC406_6258 NC_010557.1 846578 847177 R KEGG: bam:Bamb_6544 nitrile hydratase, alpha subunit; TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain; nitrile hydratase subunit alpha complement(846578..847177) Burkholderia ambifaria MC40-6 6182813 YP_001816245.1 CDS BamMC406_6259 NC_010557.1 847602 848498 D KEGG: bam:Bamb_6545 hypothetical protein; hypothetical protein 847602..848498 Burkholderia ambifaria MC40-6 6182814 YP_001816246.1 CDS BamMC406_6260 NC_010557.1 848597 849649 D KEGG: bam:Bamb_6546 putative phenylacetaldoxime dehydratase; phenylacetaldoxime dehydratase 848597..849649 Burkholderia ambifaria MC40-6 6182815 YP_001816247.1 CDS BamMC406_6261 NC_010557.1 849707 851233 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 849707..851233 Burkholderia ambifaria MC40-6 6182816 YP_001816248.1 CDS BamMC406_6262 NC_010557.1 851351 852409 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_6548 transcriptional regulator, AraC family; AraC family transcriptional regulator 851351..852409 Burkholderia ambifaria MC40-6 6182817 YP_001816249.1 CDS BamMC406_6263 NC_010557.1 852614 852826 R KEGG: bam:Bamb_6549 hypothetical protein; hypothetical protein complement(852614..852826) Burkholderia ambifaria MC40-6 6182818 YP_001816250.1 CDS BamMC406_6264 NC_010557.1 852823 853173 R KEGG: bam:Bamb_6550 hypothetical protein; hypothetical protein complement(852823..853173) Burkholderia ambifaria MC40-6 6182819 YP_001816251.1 CDS BamMC406_6265 NC_010557.1 853485 854243 D PFAM: protein of unknown function DUF1275; KEGG: bam:Bamb_6551 protein of unknown function DUF1275; hypothetical protein 853485..854243 Burkholderia ambifaria MC40-6 6182820 YP_001816252.1 CDS BamMC406_6266 NC_010557.1 854336 854521 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: bur:Bcep18194_C7064 helix-turn-helix protein, CopG family; CopG/DNA-binding domain-containing protein 854336..854521 Burkholderia ambifaria MC40-6 6182821 YP_001816253.1 CDS BamMC406_6267 NC_010557.1 854555 855391 R KEGG: bam:Bamb_6553 spermidine synthase-like protein; spermidine synthase-like protein complement(854555..855391) Burkholderia ambifaria MC40-6 6182822 YP_001816254.1 CDS BamMC406_6268 NC_010557.1 855436 855780 R TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: bam:Bamb_6554 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA complement(855436..855780) Burkholderia ambifaria MC40-6 6182823 YP_001816255.1 CDS BamMC406_6269 NC_010557.1 856068 856397 D PFAM: phosphocarrier HPr protein; KEGG: bam:Bamb_6555 phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr 856068..856397 Burkholderia ambifaria MC40-6 6182824 YP_001816256.1 CDS BamMC406_6270 NC_010557.1 856463 856684 D KEGG: bam:Bamb_6556 hypothetical protein; hypothetical protein 856463..856684 Burkholderia ambifaria MC40-6 6182825 YP_001816257.1 CDS BamMC406_6271 NC_010557.1 857033 857587 D PFAM: GCN5-related N-acetyltransferase; KEGG: bvi:Bcep1808_5875 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 857033..857587 Burkholderia ambifaria MC40-6 6182826 YP_001816258.1 CDS BamMC406_6272 NC_010557.1 857675 859351 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_6558 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(857675..859351) Burkholderia ambifaria MC40-6 6182713 YP_001816259.1 CDS BamMC406_6273 NC_010557.1 859354 860958 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_6559 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(859354..860958) Burkholderia ambifaria MC40-6 6182714 YP_001816260.1 CDS BamMC406_6274 NC_010557.1 861044 862426 R PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_6560 secretion protein HlyD family protein; secretion protein HlyD family protein complement(861044..862426) Burkholderia ambifaria MC40-6 6182715 YP_001816261.1 CDS BamMC406_6275 NC_010557.1 862730 863215 R KEGG: bam:Bamb_6561 hypothetical protein; hypothetical protein complement(862730..863215) Burkholderia ambifaria MC40-6 6182716 YP_001816262.1 CDS BamMC406_6276 NC_010557.1 863329 863868 R PFAM: transport-associated; KEGG: bam:Bamb_6562 transport-associated; transport-associated complement(863329..863868) Burkholderia ambifaria MC40-6 6182717 YP_001816263.1 CDS BamMC406_6277 NC_010557.1 864034 864774 R PFAM: FRG domain protein; KEGG: bam:Bamb_6563 hypothetical protein; FRG domain-containing protein complement(864034..864774) Burkholderia ambifaria MC40-6 6182718 YP_001816264.1 CDS BamMC406_6278 NC_010557.1 864973 865365 R PFAM: protein of unknown function DUF305; KEGG: bam:Bamb_6564 protein of unknown function DUF305; hypothetical protein complement(864973..865365) Burkholderia ambifaria MC40-6 6182719 YP_001816265.1 CDS BamMC406_6279 NC_010557.1 865425 867095 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bmu:Bmul_5509 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(865425..867095) Burkholderia ambifaria MC40-6 6182720 YP_001816266.1 CDS BamMC406_6280 NC_010557.1 867085 867744 R KEGG: bam:Bamb_6566 hypothetical protein; hypothetical protein complement(867085..867744) Burkholderia ambifaria MC40-6 6182721 YP_001816267.1 CDS BamMC406_6281 NC_010557.1 867741 868592 R KEGG: bam:Bamb_6567 hypothetical protein; hypothetical protein complement(867741..868592) Burkholderia ambifaria MC40-6 6182722 YP_001816268.1 CDS BamMC406_6282 NC_010557.1 868635 869735 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bam:Bamb_6568 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein complement(868635..869735) Burkholderia ambifaria MC40-6 6182723 YP_001816269.1 CDS BamMC406_6283 NC_010557.1 869887 871713 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bam:Bamb_6569 pyruvate decarboxylase; thiamine pyrophosphate protein 869887..871713 Burkholderia ambifaria MC40-6 6182724 YP_001816270.1 CDS BamMC406_6284 NC_010557.1 871827 873605 R PFAM: glycoside hydrolase 15-related; KEGG: bam:Bamb_6570 glycoside hydrolase 15-related; glycoside hydrolase 15-related complement(871827..873605) Burkholderia ambifaria MC40-6 6182725 YP_001816271.1 CDS BamMC406_6285 NC_010557.1 873611 874594 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_6571 short chain dehydrogenase; short chain dehydrogenase complement(873611..874594) Burkholderia ambifaria MC40-6 6182726 YP_001816272.1 CDS BamMC406_6286 NC_010557.1 874874 875932 D TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: bam:Bamb_6572 cytochrome c, monohaem; cytochrome c oxidase subunit II 874874..875932 Burkholderia ambifaria MC40-6 6182727 YP_001816273.1 CDS BamMC406_6287 NC_010557.1 875947 878586 D KEGG: bam:Bamb_6573 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit III; cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 875947..878586 Burkholderia ambifaria MC40-6 6182728 YP_001816274.1 CDS BamMC406_6288 NC_010557.1 878583 878984 D KEGG: bam:Bamb_6574 hypothetical protein; hypothetical protein 878583..878984 Burkholderia ambifaria MC40-6 6182729 YP_001816275.1 CDS BamMC406_6289 NC_010557.1 878975 880567 D PFAM: cytochrome c class I; KEGG: bam:Bamb_6575 cytochrome c, class I; gluconate 2-dehydrogenase (acceptor) 878975..880567 Burkholderia ambifaria MC40-6 6182730 YP_001816276.1 CDS BamMC406_6290 NC_010557.1 880916 882376 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bam:Bamb_6576 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(880916..882376) Burkholderia ambifaria MC40-6 6182731 YP_001816277.1 CDS BamMC406_6291 NC_010557.1 882453 883070 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_6577 transcriptional regulator, TetR family; TetR family transcriptional regulator 882453..883070 Burkholderia ambifaria MC40-6 6182732 YP_001816278.1 CDS BamMC406_6292 NC_010557.1 883153 884262 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_6578 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 883153..884262 Burkholderia ambifaria MC40-6 6182733 YP_001816279.1 CDS BamMC406_6293 NC_010557.1 884259 887396 D PFAM: acriflavin resistance protein; KEGG: bam:Bamb_6579 acriflavin resistance protein; acriflavin resistance protein 884259..887396 Burkholderia ambifaria MC40-6 6182734 YP_001816280.1 CDS BamMC406_6294 NC_010557.1 887432 887566 D KEGG: bch:Bcen2424_6530 short chain dehydrogenase; hypothetical protein 887432..887566 Burkholderia ambifaria MC40-6 6182735 YP_001816281.1 CDS BamMC406_6295 NC_010557.1 887530 887922 R PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_6580 endoribonuclease L-PSP; endoribonuclease L-PSP complement(887530..887922) Burkholderia ambifaria MC40-6 6182736 YP_001816282.1 CDS benD NC_010557.1 888039 888809 R catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase complement(888039..888809) Burkholderia ambifaria MC40-6 6182737 YP_001816283.1 CDS BamMC406_6297 NC_010557.1 888812 889837 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_6582 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit complement(888812..889837) Burkholderia ambifaria MC40-6 6182738 YP_001816284.1 CDS BamMC406_6298 NC_010557.1 889876 890364 R KEGG: bam:Bamb_6583 2-chlorobenzoate 1,2-dioxygenase; TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; benzoate 1,2-dioxygenase small subunit complement(889876..890364) Burkholderia ambifaria MC40-6 6182739 YP_001816285.1 CDS BamMC406_6299 NC_010557.1 890361 891719 R PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: bam:Bamb_6584 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(890361..891719) Burkholderia ambifaria MC40-6 6182740 YP_001816286.1 CDS BamMC406_6300 NC_010557.1 891834 892787 R TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bam:Bamb_6585 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase complement(891834..892787) Burkholderia ambifaria MC40-6 6182741 YP_001816287.1 CDS BamMC406_6301 NC_010557.1 892863 893150 R KEGG: bam:Bamb_6586 muconolactone delta-isomerase; TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase complement(892863..893150) Burkholderia ambifaria MC40-6 6182742 YP_001816288.1 CDS BamMC406_6302 NC_010557.1 893186 894322 R KEGG: bam:Bamb_6587 muconate and chloromuconate cycloisomerases; TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; muconate and chloromuconate cycloisomerase complement(893186..894322) Burkholderia ambifaria MC40-6 6182743 YP_001816289.1 CDS BamMC406_6303 NC_010557.1 895390 895602 R hypothetical protein complement(895390..895602) Burkholderia ambifaria MC40-6 6182744 YP_001816290.1 CDS BamMC406_6304 NC_010557.1 896060 896563 R KEGG: bvi:Bcep1808_3433 hypothetical protein; hypothetical protein complement(896060..896563) Burkholderia ambifaria MC40-6 6182745 YP_001816291.1 CDS BamMC406_6305 NC_010557.1 897643 899121 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_5579 benzaldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 897643..899121 Burkholderia ambifaria MC40-6 6182746 YP_001816292.1 CDS BamMC406_6306 NC_010557.1 899136 900263 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_5580 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 899136..900263 Burkholderia ambifaria MC40-6 6182747 YP_001816293.1 CDS BamMC406_6307 NC_010557.1 900431 901600 D PFAM: helix-turn-helix Fis-type; KEGG: bam:Bamb_5581 helix-turn-helix, fis-type; Fis family transcriptional regulator 900431..901600 Burkholderia ambifaria MC40-6 6182748 YP_001816294.1 CDS BamMC406_6308 NC_010557.1 901873 903057 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5582 sugar efflux transporter; sugar efflux transporter complement(901873..903057) Burkholderia ambifaria MC40-6 6182749 YP_001816295.1 CDS BamMC406_6309 NC_010557.1 903251 903925 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bch:Bcen2424_6512 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 903251..903925 Burkholderia ambifaria MC40-6 6182750 YP_001816296.1 CDS BamMC406_6310 NC_010557.1 904046 904288 R KEGG: bam:Bamb_5584 hypothetical protein; hypothetical protein complement(904046..904288) Burkholderia ambifaria MC40-6 6182751 YP_001816297.1 CDS BamMC406_6312 NC_010557.1 904702 905040 D KEGG: bam:Bamb_5586 hypothetical protein; hypothetical protein 904702..905040 Burkholderia ambifaria MC40-6 6182398 YP_001816298.1 CDS BamMC406_6313 NC_010557.1 905037 907256 D PFAM: phospholipase D/Transphosphatidylase; SNARE associated Golgi protein; KEGG: bam:Bamb_5587 phospholipase D/transphosphatidylase; hypothetical protein 905037..907256 Burkholderia ambifaria MC40-6 6182753 YP_001816299.1 CDS BamMC406_6314 NC_010557.1 907247 908056 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bam:Bamb_5588 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 907247..908056 Burkholderia ambifaria MC40-6 6182754 YP_001816300.1 CDS BamMC406_6315 NC_010557.1 908069 908557 D KEGG: bam:Bamb_5589 hypothetical protein; hypothetical protein 908069..908557 Burkholderia ambifaria MC40-6 6182755 YP_001816301.1 CDS BamMC406_6316 NC_010557.1 908650 910089 R KEGG: rme:Rmet_0632 hypothetical protein; hypothetical protein complement(908650..910089) Burkholderia ambifaria MC40-6 6182756 YP_001816302.1 CDS BamMC406_6317 NC_010557.1 910116 910403 R KEGG: bmu:Bmul_3620 hypothetical protein; hypothetical protein complement(910116..910403) Burkholderia ambifaria MC40-6 6182757 YP_001816303.1 CDS BamMC406_6318 NC_010557.1 910405 911823 R KEGG: bvi:Bcep1808_4434 hypothetical protein; hypothetical protein complement(910405..911823) Burkholderia ambifaria MC40-6 6182758 YP_001816304.1 CDS BamMC406_6319 NC_010557.1 911813 915406 R TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein; KEGG: bvi:Bcep1808_4432 rhs element Vgr protein; Rhs element Vgr protein complement(911813..915406) Burkholderia ambifaria MC40-6 6182623 YP_001816305.1 CDS BamMC406_6320 NC_010557.1 915825 919226 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bam:Bamb_5590 alpha amylase, catalytic region; alpha amylase 915825..919226 Burkholderia ambifaria MC40-6 6182624 YP_001816306.1 CDS BamMC406_6321 NC_010557.1 919223 922636 D KEGG: bam:Bamb_5591 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 919223..922636 Burkholderia ambifaria MC40-6 6182625 YP_001816307.1 CDS BamMC406_6322 NC_010557.1 922633 924834 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 922633..924834 Burkholderia ambifaria MC40-6 6182626 YP_001816308.1 CDS BamMC406_6323 NC_010557.1 924869 926983 D KEGG: bam:Bamb_5593 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 924869..926983 Burkholderia ambifaria MC40-6 6182627 YP_001816309.1 CDS BamMC406_6324 NC_010557.1 926993 928864 D KEGG: bam:Bamb_5594 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 926993..928864 Burkholderia ambifaria MC40-6 6182628 YP_001816310.1 CDS BamMC406_6325 NC_010557.1 928861 931092 D KEGG: bam:Bamb_5595 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 928861..931092 Burkholderia ambifaria MC40-6 6182629 YP_001816311.1 CDS BamMC406_6326 NC_010557.1 931089 933863 D KEGG: bam:Bamb_5596 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose synthase 931089..933863 Burkholderia ambifaria MC40-6 6182630 YP_001816312.1 CDS BamMC406_6327 NC_010557.1 933973 934695 R TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bam:Bamb_5598 NADPH-dependent FMN reductase; arsenical resistance protein ArsH complement(933973..934695) Burkholderia ambifaria MC40-6 6182631 YP_001816313.1 CDS BamMC406_6328 NC_010557.1 934716 935786 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: bam:Bamb_5599 bile acid:sodium symporter; arsenical-resistance protein complement(934716..935786) Burkholderia ambifaria MC40-6 6182632 YP_001816314.1 CDS BamMC406_6329 NC_010557.1 935853 936347 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bam:Bamb_5600 protein tyrosine phosphatase; protein tyrosine phosphatase complement(935853..936347) Burkholderia ambifaria MC40-6 6182633 YP_001816315.1 CDS BamMC406_6330 NC_010557.1 936370 936705 R PFAM: regulatory protein ArsR; KEGG: bam:Bamb_5601 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(936370..936705) Burkholderia ambifaria MC40-6 6182634 YP_001816316.1 CDS BamMC406_6331 NC_010557.1 936833 937084 R KEGG: bam:Bamb_1618 hypothetical protein; hypothetical protein complement(936833..937084) Burkholderia ambifaria MC40-6 6182635 YP_001816317.1 CDS BamMC406_6332 NC_010557.1 937209 938456 D PFAM: phosphatidylserine decarboxylase-related; KEGG: bam:Bamb_5602 phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase 937209..938456 Burkholderia ambifaria MC40-6 6182636 YP_001816318.1 CDS BamMC406_6333 NC_010557.1 938518 938727 R KEGG: bam:Bamb_5603 hypothetical protein; hypothetical protein complement(938518..938727) Burkholderia ambifaria MC40-6 6182637 YP_001816319.1 CDS BamMC406_6334 NC_010557.1 938999 939340 R KEGG: bam:Bamb_5604 hypothetical protein; hypothetical protein complement(938999..939340) Burkholderia ambifaria MC40-6 6182638 YP_001816320.1 CDS BamMC406_6335 NC_010557.1 939344 939892 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bam:Bamb_5605 intracellular protease, PfpI family; PfpI family intracellular peptidase complement(939344..939892) Burkholderia ambifaria MC40-6 6182639 YP_001816321.1 CDS BamMC406_6336 NC_010557.1 940134 940499 R KEGG: bam:Bamb_5606 hypothetical protein; hypothetical protein complement(940134..940499) Burkholderia ambifaria MC40-6 6182640 YP_001816322.1 CDS BamMC406_6337 NC_010557.1 940591 941007 R KEGG: bam:Bamb_5607 hypothetical protein; hypothetical protein complement(940591..941007) Burkholderia ambifaria MC40-6 6182641 YP_001816323.1 CDS BamMC406_6338 NC_010557.1 941152 941508 D KEGG: bam:Bamb_5608 hypothetical protein; hypothetical protein 941152..941508 Burkholderia ambifaria MC40-6 6182642 YP_001816324.1 CDS BamMC406_6339 NC_010557.1 941551 942876 D PFAM: sodium/hydrogen exchanger; KEGG: bam:Bamb_5609 sodium/hydrogen exchanger; sodium/hydrogen exchanger 941551..942876 Burkholderia ambifaria MC40-6 6182643 YP_001816325.1 CDS BamMC406_6340 NC_010557.1 942882 945731 R TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: bam:Bamb_5610 ATP dependent DNA ligase; DNA ligase D complement(942882..945731) Burkholderia ambifaria MC40-6 6182644 YP_001816326.1 CDS BamMC406_6341 NC_010557.1 945756 946763 R TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: bam:Bamb_5611 Ku domain protein; Ku protein complement(945756..946763) Burkholderia ambifaria MC40-6 6182600 YP_001816327.1 CDS katE NC_010557.1 946822 948930 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II complement(946822..948930) Burkholderia ambifaria MC40-6 6182601 YP_001816328.1 CDS BamMC406_6343 NC_010557.1 949091 949477 R KEGG: bam:Bamb_5613 hypothetical protein; hypothetical protein complement(949091..949477) Burkholderia ambifaria MC40-6 6182602 YP_001816329.1 CDS BamMC406_6344 NC_010557.1 949474 949635 R PFAM: protein of unknown function DUF1328; KEGG: bam:Bamb_5614 protein of unknown function DUF1328; hypothetical protein complement(949474..949635) Burkholderia ambifaria MC40-6 6182603 YP_001816330.1 CDS BamMC406_6345 NC_010557.1 949690 949872 R KEGG: bam:Bamb_5615 hypothetical protein; hypothetical protein complement(949690..949872) Burkholderia ambifaria MC40-6 6182604 YP_001816331.1 CDS BamMC406_6346 NC_010557.1 949942 951381 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(949942..951381) Burkholderia ambifaria MC40-6 6182605 YP_001816332.1 CDS BamMC406_6347 NC_010557.1 951729 952037 R KEGG: bam:Bamb_5617 hypothetical protein; hypothetical protein complement(951729..952037) Burkholderia ambifaria MC40-6 6182606 YP_001816333.1 CDS BamMC406_6348 NC_010557.1 952087 952398 R KEGG: bam:Bamb_5618 hypothetical protein; hypothetical protein complement(952087..952398) Burkholderia ambifaria MC40-6 6182607 YP_001816334.1 CDS BamMC406_6349 NC_010557.1 952395 952652 R KEGG: bch:Bcen2424_6474 hypothetical protein; hypothetical protein complement(952395..952652) Burkholderia ambifaria MC40-6 6182608 YP_001816335.1 CDS BamMC406_6350 NC_010557.1 953049 953354 R KEGG: bam:Bamb_5619 hypothetical protein; hypothetical protein complement(953049..953354) Burkholderia ambifaria MC40-6 6182609 YP_001816336.1 CDS BamMC406_6351 NC_010557.1 953506 953757 D KEGG: bam:Bamb_5620 hypothetical protein; hypothetical protein 953506..953757 Burkholderia ambifaria MC40-6 6182610 YP_001816337.1 CDS BamMC406_6352 NC_010557.1 953851 954282 D PFAM: CBS domain containing protein; KEGG: bam:Bamb_5621 CBS domain containing membrane protein; hypothetical protein 953851..954282 Burkholderia ambifaria MC40-6 6182611 YP_001816338.1 CDS BamMC406_6353 NC_010557.1 954373 954855 D PFAM: PRC-barrel domain protein; KEGG: bam:Bamb_5622 PRC-barrel domain protein; PRC-barrel domain-containing protein 954373..954855 Burkholderia ambifaria MC40-6 6182612 YP_001816339.1 CDS BamMC406_6354 NC_010557.1 955138 955296 R hypothetical protein complement(955138..955296) Burkholderia ambifaria MC40-6 6182613 YP_001816340.1 CDS BamMC406_6355 NC_010557.1 956175 956441 R hypothetical protein complement(956175..956441) Burkholderia ambifaria MC40-6 6182614 YP_001816341.1 CDS BamMC406_6356 NC_010557.1 958830 960032 R KEGG: bpm:BURPS1710b_2228 DNA-directed RNA polymerase II, large subunit, putative; DNA-directed RNA polymerase II, large subunit complement(958830..960032) Burkholderia ambifaria MC40-6 6182615 YP_001816342.1 CDS BamMC406_6357 NC_010557.1 960306 960941 R KEGG: bvi:Bcep1808_3481 hypothetical protein; hypothetical protein complement(960306..960941) Burkholderia ambifaria MC40-6 6182616 YP_001816343.1 CDS BamMC406_6358 NC_010557.1 961074 961592 R KEGG: bpm:BURPS1710b_2228 DNA-directed RNA polymerase II, large subunit, putative; hypothetical protein complement(961074..961592) Burkholderia ambifaria MC40-6 6182617 YP_001816344.1 CDS BamMC406_6359 NC_010557.1 961608 962189 R KEGG: bml:BMA10299_0815 hypothetical protein; hypothetical protein complement(961608..962189) Burkholderia ambifaria MC40-6 6182618 YP_001816345.1 CDS BamMC406_6362 NC_010557.1 964890 966341 R KEGG: bpd:BURPS668_A2041 chromosome segregation ATPases; chromosome segregation ATPase complement(964890..966341) Burkholderia ambifaria MC40-6 6182620 YP_001816346.1 CDS BamMC406_6363 NC_010557.1 966558 966836 R KEGG: bpm:BURPS1710b_2228 DNA-directed RNA polymerase II, large subunit, putative; hypothetical protein complement(966558..966836) Burkholderia ambifaria MC40-6 6182621 YP_001816347.1 CDS BamMC406_6364 NC_010557.1 967186 967881 D PFAM: OmpA/MotB domain protein; KEGG: bam:Bamb_6202 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 967186..967881 Burkholderia ambifaria MC40-6 6182622 YP_001816348.1 CDS BamMC406_6365 NC_010557.1 968030 969190 D KEGG: bpm:BURPS1710b_A0465 hypothetical protein; hypothetical protein 968030..969190 Burkholderia ambifaria MC40-6 6182130 YP_001816349.1 CDS BamMC406_6366 NC_010557.1 969187 970290 D KEGG: bvi:Bcep1808_3485 hypothetical protein; hypothetical protein 969187..970290 Burkholderia ambifaria MC40-6 6182131 YP_001816350.1 CDS BamMC406_6367 NC_010557.1 970332 971480 D KEGG: bpd:BURPS668_A2052 hypothetical protein; hypothetical protein 970332..971480 Burkholderia ambifaria MC40-6 6182132 YP_001816351.1 CDS BamMC406_6368 NC_010557.1 971507 972346 D KEGG: bch:Bcen2424_5787 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 971507..972346 Burkholderia ambifaria MC40-6 6182133 YP_001816352.1 CDS BamMC406_6369 NC_010557.1 972343 974166 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bpd:BURPS668_A2044 TPR domain protein; hypothetical protein 972343..974166 Burkholderia ambifaria MC40-6 6182134 YP_001816353.1 CDS BamMC406_6370 NC_010557.1 974163 975164 D KEGG: bxe:Bxe_A0175 outer membrane porin, OmpA/MotB family; hypothetical protein 974163..975164 Burkholderia ambifaria MC40-6 6182135 YP_001816354.1 CDS BamMC406_6371 NC_010557.1 975491 976786 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5623 metabolite/H+ symporter, major facilitator superfamily (MFS); major facilitator superfamily metabolite/H(+) symporter 975491..976786 Burkholderia ambifaria MC40-6 6182136 YP_001816355.1 CDS BamMC406_6372 NC_010557.1 976793 977632 D KEGG: bam:Bamb_5624 extracellular solute-binding protein, family 1; extracellular solute-binding protein 976793..977632 Burkholderia ambifaria MC40-6 6182137 YP_001816356.1 CDS BamMC406_6373 NC_010557.1 977657 978928 R PFAM: sodium:dicarboxylate symporter; KEGG: bam:Bamb_5625 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(977657..978928) Burkholderia ambifaria MC40-6 6182138 YP_001816357.1 CDS BamMC406_6374 NC_010557.1 979032 979973 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5626 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(979032..979973) Burkholderia ambifaria MC40-6 6182139 YP_001816358.1 CDS BamMC406_6375 NC_010557.1 980048 980941 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5627 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(980048..980941) Burkholderia ambifaria MC40-6 6182140 YP_001816359.1 CDS BamMC406_6376 NC_010557.1 981162 981425 D KEGG: bam:Bamb_5628 hypothetical protein; hypothetical protein 981162..981425 Burkholderia ambifaria MC40-6 6182141 YP_001816360.1 CDS BamMC406_6377 NC_010557.1 981473 982687 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5629 major facilitator superfamily MFS_1; major facilitator transporter 981473..982687 Burkholderia ambifaria MC40-6 6182142 YP_001816361.1 CDS BamMC406_6378 NC_010557.1 982715 983191 R PFAM: response regulator receiver; KEGG: bam:Bamb_5630 response regulator receiver protein; response regulator receiver protein complement(982715..983191) Burkholderia ambifaria MC40-6 6182143 YP_001816362.1 CDS BamMC406_6379 NC_010557.1 983427 984080 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bam:Bamb_5631 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-related protein 983427..984080 Burkholderia ambifaria MC40-6 6182144 YP_001816363.1 CDS BamMC406_6380 NC_010557.1 984077 985429 D KEGG: bvi:Bcep1808_5716 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 984077..985429 Burkholderia ambifaria MC40-6 6182145 YP_001816364.1 CDS BamMC406_6381 NC_010557.1 985575 986186 R KEGG: bam:Bamb_5633 hypothetical protein; hypothetical protein complement(985575..986186) Burkholderia ambifaria MC40-6 6182146 YP_001816365.1 CDS BamMC406_6382 NC_010557.1 986246 986857 R KEGG: bam:Bamb_5634 hypothetical protein; hypothetical protein complement(986246..986857) Burkholderia ambifaria MC40-6 6182147 YP_001816366.1 CDS BamMC406_6383 NC_010557.1 986886 987743 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5635 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(986886..987743) Burkholderia ambifaria MC40-6 6182148 YP_001816367.1 CDS BamMC406_6384 NC_010557.1 987874 988440 R KEGG: bam:Bamb_5636 hypothetical protein; hypothetical protein complement(987874..988440) Burkholderia ambifaria MC40-6 6182149 YP_001816368.1 CDS BamMC406_6385 NC_010557.1 988529 988828 R KEGG: bam:Bamb_5637 hypothetical protein; hypothetical protein complement(988529..988828) Burkholderia ambifaria MC40-6 6182150 YP_001816369.1 CDS BamMC406_6386 NC_010557.1 988868 989896 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5638 short chain dehydrogenase; short chain dehydrogenase complement(988868..989896) Burkholderia ambifaria MC40-6 6182151 YP_001816370.1 CDS BamMC406_6387 NC_010557.1 989924 990328 R PFAM: transport-associated; KEGG: bam:Bamb_5639 transport-associated; transport-associated complement(989924..990328) Burkholderia ambifaria MC40-6 6182152 YP_001816371.1 CDS BamMC406_6388 NC_010557.1 990571 991887 D PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_5640 glycosyl transferase, group 1; group 1 glycosyl transferase 990571..991887 Burkholderia ambifaria MC40-6 6182533 YP_001816372.1 CDS BamMC406_6389 NC_010557.1 991884 992933 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bam:Bamb_5641 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 991884..992933 Burkholderia ambifaria MC40-6 6182534 YP_001816373.1 CDS BamMC406_6390 NC_010557.1 993002 995314 R KEGG: bam:Bamb_5642 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(993002..995314) Burkholderia ambifaria MC40-6 6182535 YP_001816374.1 CDS BamMC406_6391 NC_010557.1 995455 996162 D PFAM: LmbE family protein; KEGG: bam:Bamb_5643 hypothetical protein; LmbE family protein 995455..996162 Burkholderia ambifaria MC40-6 6182536 YP_001816375.1 CDS BamMC406_6392 NC_010557.1 996141 997064 D PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_5644 glycosyl transferase, family 2; glycosyl transferase family protein 996141..997064 Burkholderia ambifaria MC40-6 6182537 YP_001816376.1 CDS BamMC406_6393 NC_010557.1 997082 998449 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_5645 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(997082..998449) Burkholderia ambifaria MC40-6 6182538 YP_001816377.1 CDS BamMC406_6394 NC_010557.1 998796 999866 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bam:Bamb_5646 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 998796..999866 Burkholderia ambifaria MC40-6 6182539 YP_001816378.1 CDS BamMC406_6395 NC_010557.1 999915 1000865 R PFAM: glycosyl transferase group 1; KEGG: bam:Bamb_5647 glycosyl transferase, group 1; group 1 glycosyl transferase complement(999915..1000865) Burkholderia ambifaria MC40-6 6182540 YP_001816379.1 CDS BamMC406_6396 NC_010557.1 1000855 1001931 R PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_5648 glycosyl transferase, family 9; glycosyl transferase family protein complement(1000855..1001931) Burkholderia ambifaria MC40-6 6182541 YP_001816380.1 CDS BamMC406_6397 NC_010557.1 1001928 1002929 R PFAM: glycosyl transferase family 2; KEGG: bam:Bamb_5649 glycosyl transferase, family 2; glycosyl transferase family protein complement(1001928..1002929) Burkholderia ambifaria MC40-6 6182542 YP_001816381.1 CDS BamMC406_6398 NC_010557.1 1002926 1004671 R PFAM: Carbamoyltransferase; KEGG: bam:Bamb_5650 carbamoyltransferase; carbamoyltransferase complement(1002926..1004671) Burkholderia ambifaria MC40-6 6182543 YP_001816382.1 CDS BamMC406_6399 NC_010557.1 1004675 1005877 R PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_5651 glycosyl transferase, family 9; glycosyl transferase family protein complement(1004675..1005877) Burkholderia ambifaria MC40-6 6182544 YP_001816383.1 CDS BamMC406_6400 NC_010557.1 1005874 1006485 R TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_5652 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein complement(1005874..1006485) Burkholderia ambifaria MC40-6 6182545 YP_001816384.1 CDS BamMC406_6401 NC_010557.1 1006476 1007225 R PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: bam:Bamb_5653 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1006476..1007225) Burkholderia ambifaria MC40-6 6182546 YP_001816385.1 CDS BamMC406_6402 NC_010557.1 1007413 1007940 R KEGG: bmu:Bmul_5438 hypothetical protein; hypothetical protein complement(1007413..1007940) Burkholderia ambifaria MC40-6 6182547 YP_001816386.1 CDS BamMC406_6403 NC_010557.1 1007882 1010692 R PFAM: ABC transporter transmembrane region; response regulator receiver; ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_5655 response regulator receiver protein; response regulator receiver protein complement(1007882..1010692) Burkholderia ambifaria MC40-6 6182548 YP_001816387.1 CDS BamMC406_6404 NC_010557.1 1010740 1011600 R PFAM: transport-associated; KEGG: bam:Bamb_5656 transport-associated; transport-associated complement(1010740..1011600) Burkholderia ambifaria MC40-6 6182549 YP_001816388.1 CDS BamMC406_6405 NC_010557.1 1011875 1012240 R KEGG: bam:Bamb_5657 hypothetical protein; hypothetical protein complement(1011875..1012240) Burkholderia ambifaria MC40-6 6182550 YP_001816389.1 CDS BamMC406_6406 NC_010557.1 1012534 1014120 D KEGG: bam:Bamb_5658 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1012534..1014120 Burkholderia ambifaria MC40-6 6182551 YP_001816390.1 CDS BamMC406_6407 NC_010557.1 1014184 1014516 R PFAM: protein of unknown function DUF326; KEGG: bam:Bamb_5659 protein of unknown function DUF326; hypothetical protein complement(1014184..1014516) Burkholderia ambifaria MC40-6 6182552 YP_001816391.1 CDS BamMC406_6409 NC_010557.1 1015059 1016597 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_5661 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1015059..1016597) Burkholderia ambifaria MC40-6 6182399 YP_001816392.1 CDS BamMC406_6410 NC_010557.1 1016891 1018315 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_5662 transcriptional regulator, GntR family; transcriptional regulator complement(1016891..1018315) Burkholderia ambifaria MC40-6 6182554 YP_001816393.1 CDS BamMC406_6411 NC_010557.1 1018869 1019324 R KEGG: bam:Bamb_5663 membrane protein; membrane protein complement(1018869..1019324) Burkholderia ambifaria MC40-6 6182222 YP_001816394.1 CDS BamMC406_6412 NC_010557.1 1019506 1019958 R PFAM: phosphate-starvation-inducible E; KEGG: bam:Bamb_5664 phosphate-starvation-inducible E; phosphate-starvation-inducible E complement(1019506..1019958) Burkholderia ambifaria MC40-6 6182223 YP_001816395.1 CDS BamMC406_6413 NC_010557.1 1019955 1020062 R hypothetical protein complement(1019955..1020062) Burkholderia ambifaria MC40-6 6182224 YP_001816396.1 CDS BamMC406_6414 NC_010557.1 1020499 1021548 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: bam:Bamb_5665 Dyp-type peroxidase family; Dyp-type peroxidase family protein 1020499..1021548 Burkholderia ambifaria MC40-6 6182225 YP_001816397.1 CDS BamMC406_6415 NC_010557.1 1021541 1022356 D PFAM: Linocin_M18 bacteriocin protein; KEGG: bam:Bamb_5666 Linocin_M18 bacteriocin protein; Linocin_M18 bacteriocin protein 1021541..1022356 Burkholderia ambifaria MC40-6 6182226 YP_001816398.1 CDS BamMC406_6416 NC_010557.1 1022457 1022726 D KEGG: bam:Bamb_5667 hypothetical protein; hypothetical protein 1022457..1022726 Burkholderia ambifaria MC40-6 6182227 YP_001816399.1 CDS BamMC406_6417 NC_010557.1 1023170 1026031 D PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_5668 ATPase AAA-2 domain protein; ATPase 1023170..1026031 Burkholderia ambifaria MC40-6 6182228 YP_001816400.1 CDS BamMC406_6418 NC_010557.1 1026131 1028410 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bam:Bamb_5669 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase alpha (molybdopterin) subunit 1026131..1028410 Burkholderia ambifaria MC40-6 6182229 YP_001816401.1 CDS BamMC406_6419 NC_010557.1 1028546 1029967 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bam:Bamb_5670 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease complement(1028546..1029967) Burkholderia ambifaria MC40-6 6182230 YP_001816402.1 CDS BamMC406_6420 NC_010557.1 1030319 1031242 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5671 transcriptional regulator, LysR family; LysR family transcriptional regulator 1030319..1031242 Burkholderia ambifaria MC40-6 6182231 YP_001816403.1 CDS BamMC406_6421 NC_010557.1 1031304 1032476 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(1031304..1032476) Burkholderia ambifaria MC40-6 6182232 YP_001816404.1 CDS BamMC406_6422 NC_010557.1 1032469 1033146 R PFAM: protein of unknown function DUF1028; KEGG: bam:Bamb_5673 protein of unknown function DUF1028; hypothetical protein complement(1032469..1033146) Burkholderia ambifaria MC40-6 6182233 YP_001816405.1 CDS BamMC406_6423 NC_010557.1 1033155 1033592 R PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_5674 endoribonuclease L-PSP; endoribonuclease L-PSP complement(1033155..1033592) Burkholderia ambifaria MC40-6 6182234 YP_001816406.1 CDS BamMC406_6424 NC_010557.1 1033718 1035064 R PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_5675 flavin-containing monooxygenase FMO; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1033718..1035064) Burkholderia ambifaria MC40-6 6182235 YP_001816407.1 CDS BamMC406_6425 NC_010557.1 1035405 1035908 R PFAM: pentapeptide repeat protein; KEGG: bch:Bcen2424_6421 hypothetical protein; pentapeptide repeat-containing protein complement(1035405..1035908) Burkholderia ambifaria MC40-6 6182236 YP_001816408.1 CDS BamMC406_6426 NC_010557.1 1035905 1036204 R hypothetical protein complement(1035905..1036204) Burkholderia ambifaria MC40-6 6182237 YP_001816409.1 CDS BamMC406_6427 NC_010557.1 1036216 1037754 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: bch:Bcen2424_6420 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(1036216..1037754) Burkholderia ambifaria MC40-6 6182238 YP_001816410.1 CDS BamMC406_6428 NC_010557.1 1037889 1039970 R PFAM: phospholipase D/Transphosphatidylase; KEGG: bch:Bcen2424_6419 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(1037889..1039970) Burkholderia ambifaria MC40-6 6182239 YP_001816411.1 CDS BamMC406_6429 NC_010557.1 1040006 1042873 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bch:Bcen2424_6418 rhs element Vgr protein; ImpA family type VI secretion-associated protein complement(1040006..1042873) Burkholderia ambifaria MC40-6 6182240 YP_001816412.1 CDS BamMC406_6430 NC_010557.1 1043407 1043562 D KEGG: bam:Bamb_5679 hypothetical protein; hypothetical protein 1043407..1043562 Burkholderia ambifaria MC40-6 6182241 YP_001816413.1 CDS BamMC406_6431 NC_010557.1 1043772 1044785 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 1043772..1044785 Burkholderia ambifaria MC40-6 6182242 YP_001816414.1 CDS BamMC406_6433 NC_010557.1 1045371 1047182 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bvi:Bcep1808_1199 protein of unknown function DUF879; type VI secretion protein 1045371..1047182 Burkholderia ambifaria MC40-6 6182400 YP_001816415.1 CDS BamMC406_6434 NC_010557.1 1047233 1047484 R PFAM: PAAR repeat-containing protein; KEGG: bvi:Bcep1808_1198 PaaR repeat-containing protein; PAAR repeat-containing protein complement(1047233..1047484) Burkholderia ambifaria MC40-6 6182244 YP_001816416.1 CDS BamMC406_6435 NC_010557.1 1047522 1048259 R KEGG: bvi:Bcep1808_1197 hypothetical protein; hypothetical protein complement(1047522..1048259) Burkholderia ambifaria MC40-6 6182782 YP_001816417.1 CDS BamMC406_6436 NC_010557.1 1048289 1048540 R PFAM: PAAR repeat-containing protein; KEGG: bvi:Bcep1808_1198 PaaR repeat-containing protein; PAAR repeat-containing protein complement(1048289..1048540) Burkholderia ambifaria MC40-6 6182783 YP_001816418.1 CDS BamMC406_6437 NC_010557.1 1048552 1049283 R KEGG: bvi:Bcep1808_1197 hypothetical protein; hypothetical protein complement(1048552..1049283) Burkholderia ambifaria MC40-6 6182784 YP_001816419.1 CDS BamMC406_6438 NC_010557.1 1049280 1052180 R KEGG: bvi:Bcep1808_1196 hypothetical protein; hypothetical protein complement(1049280..1052180) Burkholderia ambifaria MC40-6 6182785 YP_001816420.1 CDS BamMC406_6439 NC_010557.1 1052224 1053198 R KEGG: bvi:Bcep1808_1194 hypothetical protein; hypothetical protein complement(1052224..1053198) Burkholderia ambifaria MC40-6 6182786 YP_001816421.1 CDS BamMC406_6440 NC_010557.1 1053205 1055736 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bvi:Bcep1808_1193 rhs element Vgr protein; ImpA family type VI secretion-associated protein complement(1053205..1055736) Burkholderia ambifaria MC40-6 6182787 YP_001816422.1 CDS BamMC406_6441 NC_010557.1 1056049 1056969 R PFAM: protein of unknown function UPF0187; KEGG: bam:Bamb_5683 protein of unknown function UPF0187; hypothetical protein complement(1056049..1056969) Burkholderia ambifaria MC40-6 6182788 YP_001816423.1 CDS BamMC406_6442 NC_010557.1 1057070 1058077 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: bam:Bamb_5684 cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase, subunit II complement(1057070..1058077) Burkholderia ambifaria MC40-6 6182789 YP_001816424.1 CDS BamMC406_6443 NC_010557.1 1058081 1059481 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bam:Bamb_5685 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(1058081..1059481) Burkholderia ambifaria MC40-6 6182790 YP_001816425.1 CDS BamMC406_6444 NC_010557.1 1059899 1060771 D TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: bam:Bamb_5686 formate dehydrogenase family accessory protein FdhD; formate dehydrogenase family accessory protein FdhD 1059899..1060771 Burkholderia ambifaria MC40-6 6182791 YP_001816426.1 CDS BamMC406_6445 NC_010557.1 1060768 1061982 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: bam:Bamb_5687 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 1060768..1061982 Burkholderia ambifaria MC40-6 6182792 YP_001816427.1 CDS BamMC406_6446 NC_010557.1 1062173 1063288 D KEGG: bam:Bamb_5688 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1062173..1063288 Burkholderia ambifaria MC40-6 6182793 YP_001816428.1 CDS BamMC406_6447 NC_010557.1 1063336 1063899 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: bam:Bamb_5689 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein 1063336..1063899 Burkholderia ambifaria MC40-6 6182794 YP_001816429.1 CDS BamMC406_6448 NC_010557.1 1063970 1064227 D PFAM: thiamineS protein; KEGG: bam:Bamb_5690 thiamineS protein; sulfur carrier protein ThiS 1063970..1064227 Burkholderia ambifaria MC40-6 6182795 YP_001816430.1 CDS BamMC406_6450 NC_010557.1 1065010 1067595 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1065010..1067595 Burkholderia ambifaria MC40-6 6182290 YP_001816431.1 CDS BamMC406_6453 NC_010557.1 1069032 1070459 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bam:Bamb_5696 transcriptional regulator, GntR family; transcriptional regulator complement(1069032..1070459) Burkholderia ambifaria MC40-6 6182292 YP_001816432.1 CDS BamMC406_6454 NC_010557.1 1071163 1072575 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bch:Bcen2424_6395 transcriptional regulator, GntR family; transcriptional regulator complement(1071163..1072575) Burkholderia ambifaria MC40-6 6182798 YP_001816433.1 CDS BamMC406_6455 NC_010557.1 1072807 1074036 D PFAM: FAD dependent oxidoreductase; KEGG: bch:Bcen2424_6394 D-amino-acid dehydrogenase; FAD dependent oxidoreductase 1072807..1074036 Burkholderia ambifaria MC40-6 6182799 YP_001816434.1 CDS BamMC406_6456 NC_010557.1 1074073 1075224 D PFAM: Extracellular ligand-binding receptor; KEGG: bch:Bcen2424_6393 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1074073..1075224 Burkholderia ambifaria MC40-6 6182800 YP_001816435.1 CDS BamMC406_6457 NC_010557.1 1075256 1076158 R KEGG: bam:Bamb_5703 hypothetical protein; hypothetical protein complement(1075256..1076158) Burkholderia ambifaria MC40-6 6182801 YP_001816436.1 CDS BamMC406_6458 NC_010557.1 1076387 1078129 R PFAM: integrase family protein; KEGG: bam:Bamb_5705 phage integrase family protein; integrase family protein complement(1076387..1078129) Burkholderia ambifaria MC40-6 6182802 YP_001816437.1 CDS BamMC406_6459 NC_010557.1 1078227 1079492 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5706 major facilitator superfamily MFS_1; major facilitator transporter complement(1078227..1079492) Burkholderia ambifaria MC40-6 6182803 YP_001816438.1 CDS BamMC406_6460 NC_010557.1 1079508 1080296 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bam:Bamb_5707 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1079508..1080296) Burkholderia ambifaria MC40-6 6182804 YP_001816439.1 CDS BamMC406_6461 NC_010557.1 1080306 1080989 R KEGG: bam:Bamb_5708 respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma complement(1080306..1080989) Burkholderia ambifaria MC40-6 6182555 YP_001816440.1 CDS BamMC406_6462 NC_010557.1 1081014 1081715 R TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: bam:Bamb_5709 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone complement(1081014..1081715) Burkholderia ambifaria MC40-6 6182556 YP_001816441.1 CDS BamMC406_6463 NC_010557.1 1081712 1083247 R TIGRFAM: nitrate reductase, beta subunit; KEGG: bam:Bamb_5710 nitrate reductase, beta subunit; nitrate reductase subunit beta complement(1081712..1083247) Burkholderia ambifaria MC40-6 6182557 YP_001816442.1 CDS BamMC406_6464 NC_010557.1 1083244 1087089 R TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bam:Bamb_5711 nitrate reductase, alpha subunit; nitrate reductase subunit alpha complement(1083244..1087089) Burkholderia ambifaria MC40-6 6182558 YP_001816443.1 CDS BamMC406_6465 NC_010557.1 1087442 1088632 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_5712 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1087442..1088632 Burkholderia ambifaria MC40-6 6182559 YP_001816444.1 CDS BamMC406_6466 NC_010557.1 1088739 1088930 R KEGG: bam:Bamb_5713 hypothetical protein; hypothetical protein complement(1088739..1088930) Burkholderia ambifaria MC40-6 6182560 YP_001816445.1 CDS BamMC406_6467 NC_010557.1 1088945 1089424 R PFAM: UspA domain protein; KEGG: bam:Bamb_5714 UspA domain protein; UspA domain-containing protein complement(1088945..1089424) Burkholderia ambifaria MC40-6 6182561 YP_001816446.1 CDS BamMC406_6468 NC_010557.1 1089689 1090450 D KEGG: bam:Bamb_5715 2-keto-4-pentenoate hydratase-like protein; 2-keto-4-pentenoate hydratase 1089689..1090450 Burkholderia ambifaria MC40-6 6182562 YP_001816447.1 CDS BamMC406_6469 NC_010557.1 1090745 1092157 D KEGG: bam:Bamb_5717 hypothetical protein; hypothetical protein 1090745..1092157 Burkholderia ambifaria MC40-6 6182563 YP_001816448.1 CDS BamMC406_6470 NC_010557.1 1092203 1093255 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5718 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1092203..1093255) Burkholderia ambifaria MC40-6 6182564 YP_001816449.1 CDS BamMC406_6471 NC_010557.1 1093402 1093728 R KEGG: bam:Bamb_5719 hypothetical protein; hypothetical protein complement(1093402..1093728) Burkholderia ambifaria MC40-6 6182565 YP_001816450.1 CDS BamMC406_6472 NC_010557.1 1093760 1095265 R KEGG: bam:Bamb_5720 hypothetical protein; hypothetical protein complement(1093760..1095265) Burkholderia ambifaria MC40-6 6182566 YP_001816451.1 CDS BamMC406_6473 NC_010557.1 1095686 1097857 D KEGG: bam:Bamb_5721 hypothetical protein; hypothetical protein 1095686..1097857 Burkholderia ambifaria MC40-6 6182567 YP_001816452.1 CDS BamMC406_6474 NC_010557.1 1097865 1098572 D KEGG: bam:Bamb_5722 hypothetical protein; hypothetical protein 1097865..1098572 Burkholderia ambifaria MC40-6 6182568 YP_001816453.1 CDS BamMC406_6475 NC_010557.1 1098653 1099489 R PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5723 alpha/beta hydrolase fold; alpha/beta hydrolase complement(1098653..1099489) Burkholderia ambifaria MC40-6 6182569 YP_001816454.1 CDS BamMC406_6476 NC_010557.1 1099667 1100719 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: bam:Bamb_6181 transposase, IS605 OrfB family; IS605 family transposase OrfB complement(1099667..1100719) Burkholderia ambifaria MC40-6 6182570 YP_001816455.1 CDS BamMC406_6477 NC_010557.1 1100897 1101271 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bam:Bamb_5724 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1100897..1101271 Burkholderia ambifaria MC40-6 6182571 YP_001816456.1 CDS BamMC406_6478 NC_010557.1 1101352 1102185 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bam:Bamb_5725 short chain dehydrogenase; short chain dehydrogenase complement(1101352..1102185) Burkholderia ambifaria MC40-6 6182572 YP_001816457.1 CDS BamMC406_6479 NC_010557.1 1102280 1103251 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: bam:Bamb_5726 transcriptional regulator, AraC family; AraC family transcriptional regulator 1102280..1103251 Burkholderia ambifaria MC40-6 6182573 YP_001816458.1 CDS BamMC406_6480 NC_010557.1 1103282 1104454 R PFAM: Aldose 1-epimerase; KEGG: bam:Bamb_5727 aldose 1-epimerase; aldose 1-epimerase complement(1103282..1104454) Burkholderia ambifaria MC40-6 6182574 YP_001816459.1 CDS BamMC406_6481 NC_010557.1 1104630 1105958 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_5728 major facilitator superfamily MFS_1; major facilitator transporter complement(1104630..1105958) Burkholderia ambifaria MC40-6 6182575 YP_001816460.1 CDS BamMC406_6482 NC_010557.1 1106199 1107104 D KEGG: bam:Bamb_5729 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 1106199..1107104 Burkholderia ambifaria MC40-6 6182576 YP_001816461.1 CDS BamMC406_6483 NC_010557.1 1107404 1108321 R KEGG: bam:Bamb_5730 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor complement(1107404..1108321) Burkholderia ambifaria MC40-6 6182401 YP_001816462.1 CDS BamMC406_6484 NC_010557.1 1108318 1108866 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bam:Bamb_5731 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(1108318..1108866) Burkholderia ambifaria MC40-6 6182402 YP_001816463.1 CDS BamMC406_6485 NC_010557.1 1109069 1109914 R PFAM: Abortive infection protein; KEGG: bam:Bamb_5732 abortive infection protein; abortive infection protein complement(1109069..1109914) Burkholderia ambifaria MC40-6 6182403 YP_001816464.1 CDS BamMC406_6486 NC_010557.1 1109972 1110388 R PFAM: OsmC family protein; KEGG: bam:Bamb_5733 OsmC family protein; OsmC family protein complement(1109972..1110388) Burkholderia ambifaria MC40-6 6182404 YP_001816465.1 CDS BamMC406_6487 NC_010557.1 1110438 1110683 R KEGG: bam:Bamb_5734 hypothetical protein; hypothetical protein complement(1110438..1110683) Burkholderia ambifaria MC40-6 6182405 YP_001816466.1 CDS BamMC406_6488 NC_010557.1 1111009 1111455 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: bam:Bamb_5735 protein of unknown function DUF861, cupin_3; hypothetical protein 1111009..1111455 Burkholderia ambifaria MC40-6 6182406 YP_001816467.1 CDS BamMC406_6489 NC_010557.1 1111548 1112801 D PFAM: condensation domain protein; KEGG: bam:Bamb_5736 condensation domain protein; condensation domain-containing protein 1111548..1112801 Burkholderia ambifaria MC40-6 6182407 YP_001816468.1 CDS BamMC406_6490 NC_010557.1 1112894 1114087 R PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5737 major facilitator superfamily MFS_1; major facilitator transporter complement(1112894..1114087) Burkholderia ambifaria MC40-6 6182408 YP_001816469.1 CDS BamMC406_6491 NC_010557.1 1114273 1114695 R KEGG: bam:Bamb_5738 hypothetical protein; hypothetical protein complement(1114273..1114695) Burkholderia ambifaria MC40-6 6182409 YP_001816470.1 CDS BamMC406_6492 NC_010557.1 1114718 1115566 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: bam:Bamb_5739 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1114718..1115566) Burkholderia ambifaria MC40-6 6182410 YP_001816471.1 CDS BamMC406_6493 NC_010557.1 1115814 1116941 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5740 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1115814..1116941) Burkholderia ambifaria MC40-6 6182411 YP_001816472.1 CDS BamMC406_6494 NC_010557.1 1117077 1117460 R PFAM: response regulator receiver; KEGG: bam:Bamb_5741 response regulator receiver protein; response regulator receiver protein complement(1117077..1117460) Burkholderia ambifaria MC40-6 6182412 YP_001816473.1 CDS BamMC406_6495 NC_010557.1 1117688 1118332 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_5742 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1117688..1118332) Burkholderia ambifaria MC40-6 6182413 YP_001816474.1 CDS BamMC406_6496 NC_010557.1 1118465 1123522 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: bam:Bamb_5743 ATP-binding region, ATPase domain protein domain protein; ATPase domain-containing protein complement(1118465..1123522) Burkholderia ambifaria MC40-6 6182414 YP_001816475.1 CDS BamMC406_6497 NC_010557.1 1123876 1124493 D KEGG: bam:Bamb_5744 hypothetical protein; hypothetical protein 1123876..1124493 Burkholderia ambifaria MC40-6 6182415 YP_001816476.1 CDS BamMC406_6498 NC_010557.1 1124701 1125132 D KEGG: bam:Bamb_5745 hypothetical protein; hypothetical protein 1124701..1125132 Burkholderia ambifaria MC40-6 6182416 YP_001816477.1 CDS BamMC406_6499 NC_010557.1 1125209 1125649 R KEGG: bam:Bamb_5746 hypothetical protein; hypothetical protein complement(1125209..1125649) Burkholderia ambifaria MC40-6 6182417 YP_001816478.1 CDS BamMC406_6500 NC_010557.1 1125746 1126135 R KEGG: bam:Bamb_5747 hypothetical protein; hypothetical protein complement(1125746..1126135) Burkholderia ambifaria MC40-6 6182418 YP_001816479.1 CDS BamMC406_6501 NC_010557.1 1126374 1127786 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5748 GAF sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase complement(1126374..1127786) Burkholderia ambifaria MC40-6 6182419 BamMC406_R0004 tRNA BamMC406_R0004 NC_010551.1 29016 29092 D tRNA-Val 29016..29092 Burkholderia ambifaria MC40-6 6176068 BamMC406_R0005 tRNA BamMC406_R0005 NC_010551.1 178088 178163 D tRNA-Arg 178088..178163 Burkholderia ambifaria MC40-6 6177176 BamMC406_R0006 tRNA BamMC406_R0006 NC_010551.1 254695 254770 D tRNA-Ala 254695..254770 Burkholderia ambifaria MC40-6 6177927 BamMC406_R0008 tRNA BamMC406_R0008 NC_010551.1 300513 300589 D tRNA-Ile 300513..300589 Burkholderia ambifaria MC40-6 6177969 BamMC406_R0009 tRNA BamMC406_R0009 NC_010551.1 300686 300761 D tRNA-Ala 300686..300761 Burkholderia ambifaria MC40-6 6177685 BamMC406_R0012 tRNA BamMC406_R0012 NC_010551.1 306448 306533 D tRNA-Tyr 306448..306533 Burkholderia ambifaria MC40-6 6177620 BamMC406_R0013 tRNA BamMC406_R0013 NC_010551.1 306577 306650 D tRNA-Gly 306577..306650 Burkholderia ambifaria MC40-6 6176244 BamMC406_R0014 tRNA BamMC406_R0014 NC_010551.1 306676 306750 D tRNA-Thr 306676..306750 Burkholderia ambifaria MC40-6 6179053 BamMC406_R0015 tRNA BamMC406_R0015 NC_010551.1 308066 308141 D tRNA-Trp 308066..308141 Burkholderia ambifaria MC40-6 6177650 BamMC406_R0016 tRNA BamMC406_R0016 NC_010551.1 411556 411631 D tRNA-Thr 411556..411631 Burkholderia ambifaria MC40-6 6178291 BamMC406_R0018 tRNA BamMC406_R0018 NC_010551.1 533150 533226 D tRNA-Ile 533150..533226 Burkholderia ambifaria MC40-6 6178466 BamMC406_R0019 tRNA BamMC406_R0019 NC_010551.1 533316 533391 D tRNA-Ala 533316..533391 Burkholderia ambifaria MC40-6 6178429 BamMC406_R0022 tRNA BamMC406_R0022 NC_010551.1 576217 576293 R tRNA-Pro complement(576217..576293) Burkholderia ambifaria MC40-6 6178848 BamMC406_R0024 tRNA BamMC406_R0024 NC_010551.1 779427 779503 R tRNA-Lys complement(779427..779503) Burkholderia ambifaria MC40-6 6176114 BamMC406_R0025 tRNA BamMC406_R0025 NC_010551.1 899189 899263 R tRNA-Gly complement(899189..899263) Burkholderia ambifaria MC40-6 6179008 BamMC406_R0026 tRNA BamMC406_R0026 NC_010551.1 942701 942791 D tRNA-Ser 942701..942791 Burkholderia ambifaria MC40-6 6176318 BamMC406_R0027 tRNA BamMC406_R0027 NC_010551.1 954530 954617 R tRNA-Ser complement(954530..954617) Burkholderia ambifaria MC40-6 6178585 BamMC406_R0028 tRNA BamMC406_R0028 NC_010551.1 962012 962088 R tRNA-Arg complement(962012..962088) Burkholderia ambifaria MC40-6 6176233 BamMC406_R0029 tRNA BamMC406_R0029 NC_010551.1 962150 962226 R tRNA-Arg complement(962150..962226) Burkholderia ambifaria MC40-6 6178538 BamMC406_R0030 tRNA BamMC406_R0030 NC_010551.1 962293 962369 R tRNA-Arg complement(962293..962369) Burkholderia ambifaria MC40-6 6178437 BamMC406_R0031 tRNA BamMC406_R0031 NC_010551.1 975613 975688 R tRNA-Thr complement(975613..975688) Burkholderia ambifaria MC40-6 6176204 BamMC406_R0033 tRNA BamMC406_R0033 NC_010551.1 1068678 1068753 R tRNA-Asn complement(1068678..1068753) Burkholderia ambifaria MC40-6 6177279 BamMC406_R0034 tRNA BamMC406_R0034 NC_010551.1 1068825 1068900 R tRNA-Asn complement(1068825..1068900) Burkholderia ambifaria MC40-6 6176877 BamMC406_R0035 tRNA BamMC406_R0035 NC_010551.1 1116421 1116496 D tRNA-Gly 1116421..1116496 Burkholderia ambifaria MC40-6 6176670 BamMC406_R0036 tRNA BamMC406_R0036 NC_010551.1 1116549 1116624 D tRNA-Gly 1116549..1116624 Burkholderia ambifaria MC40-6 6176760 BamMC406_R0037 tRNA BamMC406_R0037 NC_010551.1 1116675 1116750 D tRNA-Gly 1116675..1116750 Burkholderia ambifaria MC40-6 6176832 BamMC406_R0038 tRNA BamMC406_R0038 NC_010551.1 1116851 1116924 D tRNA-Cys 1116851..1116924 Burkholderia ambifaria MC40-6 6177224 BamMC406_R0039 tRNA BamMC406_R0039 NC_010551.1 1348688 1348764 R tRNA-Pro complement(1348688..1348764) Burkholderia ambifaria MC40-6 6177592 BamMC406_R0040 tRNA BamMC406_R0040 NC_010551.1 1358080 1358156 D tRNA-Arg 1358080..1358156 Burkholderia ambifaria MC40-6 6177102 BamMC406_R0041 tRNA BamMC406_R0041 NC_010551.1 1552100 1552176 D tRNA-Val 1552100..1552176 Burkholderia ambifaria MC40-6 6176577 BamMC406_R0042 tRNA BamMC406_R0042 NC_010551.1 1564075 1564151 D tRNA-Pro 1564075..1564151 Burkholderia ambifaria MC40-6 6176089 BamMC406_R0043 tRNA BamMC406_R0043 NC_010551.1 1632954 1633040 R tRNA-Leu complement(1632954..1633040) Burkholderia ambifaria MC40-6 6178544 BamMC406_R0044 tRNA BamMC406_R0044 NC_010551.1 1633442 1633528 R tRNA-Leu complement(1633442..1633528) Burkholderia ambifaria MC40-6 6177846 BamMC406_R0045 tRNA BamMC406_R0045 NC_010551.1 1634964 1635050 R tRNA-Leu complement(1634964..1635050) Burkholderia ambifaria MC40-6 6178737 BamMC406_R0046 tRNA BamMC406_R0046 NC_010551.1 1647861 1647937 R tRNA-Met complement(1647861..1647937) Burkholderia ambifaria MC40-6 6176792 BamMC406_R0047 tRNA BamMC406_R0047 NC_010551.1 1656120 1656195 D tRNA-His 1656120..1656195 Burkholderia ambifaria MC40-6 6177453 BamMC406_R0049 tRNA BamMC406_R0049 NC_010551.1 2050298 2050374 R tRNA-Asp complement(2050298..2050374) Burkholderia ambifaria MC40-6 6176396 BamMC406_R0050 tRNA BamMC406_R0050 NC_010551.1 2050398 2050473 R tRNA-Val complement(2050398..2050473) Burkholderia ambifaria MC40-6 6179056 BamMC406_R0051 tRNA BamMC406_R0051 NC_010551.1 2061711 2061797 R tRNA-Leu complement(2061711..2061797) Burkholderia ambifaria MC40-6 6177229 BamMC406_R0052 tRNA BamMC406_R0052 NC_010551.1 2180386 2180462 R tRNA-Asp complement(2180386..2180462) Burkholderia ambifaria MC40-6 6178393 BamMC406_R0053 tRNA BamMC406_R0053 NC_010551.1 2180536 2180611 R tRNA-Glu complement(2180536..2180611) Burkholderia ambifaria MC40-6 6178372 BamMC406_R0054 tRNA BamMC406_R0054 NC_010551.1 2180676 2180752 R tRNA-Asp complement(2180676..2180752) Burkholderia ambifaria MC40-6 6178408 BamMC406_R0055 tRNA BamMC406_R0055 NC_010551.1 2180833 2180908 R tRNA-Glu complement(2180833..2180908) Burkholderia ambifaria MC40-6 6178397 BamMC406_R0056 tRNA BamMC406_R0056 NC_010551.1 2180972 2181048 R tRNA-Asp complement(2180972..2181048) Burkholderia ambifaria MC40-6 6178409 BamMC406_R0057 tRNA BamMC406_R0057 NC_010551.1 2181128 2181203 R tRNA-Glu complement(2181128..2181203) Burkholderia ambifaria MC40-6 6178491 BamMC406_R0058 tRNA BamMC406_R0058 NC_010551.1 2181343 2181418 R tRNA-Ala complement(2181343..2181418) Burkholderia ambifaria MC40-6 6178463 BamMC406_R0059 tRNA BamMC406_R0059 NC_010551.1 2207596 2207689 R tRNA-Ser complement(2207596..2207689) Burkholderia ambifaria MC40-6 6178493 BamMC406_R0060 tRNA BamMC406_R0060 NC_010551.1 2292893 2292969 R tRNA-Met complement(2292893..2292969) Burkholderia ambifaria MC40-6 6176341 BamMC406_R0061 tRNA BamMC406_R0061 NC_010551.1 2322142 2322216 D tRNA-Val 2322142..2322216 Burkholderia ambifaria MC40-6 6176951 BamMC406_R0062 tRNA BamMC406_R0062 NC_010551.1 2349286 2349376 D tRNA-Ser 2349286..2349376 Burkholderia ambifaria MC40-6 6177429 BamMC406_R0065 tRNA BamMC406_R0065 NC_010551.1 2384348 2384423 R tRNA-Ala complement(2384348..2384423) Burkholderia ambifaria MC40-6 6177275 BamMC406_R0066 tRNA BamMC406_R0066 NC_010551.1 2384520 2384596 R tRNA-Ile complement(2384520..2384596) Burkholderia ambifaria MC40-6 6176431 BamMC406_R0068 tRNA BamMC406_R0068 NC_010551.1 2417149 2417233 R tRNA-Leu complement(2417149..2417233) Burkholderia ambifaria MC40-6 6177577 BamMC406_R0069 tRNA BamMC406_R0069 NC_010551.1 2543258 2543332 D tRNA-Arg 2543258..2543332 Burkholderia ambifaria MC40-6 6176702 BamMC406_R0070 tRNA BamMC406_R0070 NC_010551.1 2546206 2546282 D tRNA-Met 2546206..2546282 Burkholderia ambifaria MC40-6 6176762 BamMC406_R0072 tRNA BamMC406_R0072 NC_010551.1 2664443 2664527 D tRNA-Leu 2664443..2664527 Burkholderia ambifaria MC40-6 6178844 BamMC406_R0073 tRNA BamMC406_R0073 NC_010551.1 2861706 2861782 D tRNA-Met 2861706..2861782 Burkholderia ambifaria MC40-6 6178903 BamMC406_R0074 tRNA BamMC406_R0074 NC_010551.1 3018514 3018590 D tRNA-Gln 3018514..3018590 Burkholderia ambifaria MC40-6 6178990 BamMC406_R0075 tRNA BamMC406_R0075 NC_010551.1 3395696 3395771 R tRNA-Phe complement(3395696..3395771) Burkholderia ambifaria MC40-6 6178252 BamMC406_R0076 tRNA BamMC406_R0076 NC_010551.1 3413177 3413252 D tRNA-Lys 3413177..3413252 Burkholderia ambifaria MC40-6 6178112 BamMC406_R0077 tRNA BamMC406_R0077 NC_010552.1 526000 526072 R tRNA-Cys complement(526000..526072) Burkholderia ambifaria MC40-6 6180464 BamMC406_R0078 tRNA BamMC406_R0078 NC_010552.1 758764 758839 D tRNA-Met 758764..758839 Burkholderia ambifaria MC40-6 6179378 BamMC406_R0079 tRNA BamMC406_R0079 NC_010552.1 883433 883524 D tRNA-Sec 883433..883524 Burkholderia ambifaria MC40-6 6179621 BamMC406_R0080 tRNA BamMC406_R0080 NC_010552.1 2076683 2076767 D tRNA-Leu 2076683..2076767 Burkholderia ambifaria MC40-6 6180946 BamMC406_R0083 tRNA BamMC406_R0083 NC_010552.1 2377488 2377563 R tRNA-Ala complement(2377488..2377563) Burkholderia ambifaria MC40-6 6179340 BamMC406_R0084 tRNA BamMC406_R0084 NC_010552.1 2377660 2377736 R tRNA-Ile complement(2377660..2377736) Burkholderia ambifaria MC40-6 6179957 BamMC406_R0088 tRNA BamMC406_R0088 NC_010557.1 245993 246068 R tRNA-Ala complement(245993..246068) Burkholderia ambifaria MC40-6 6182385 BamMC406_R0089 tRNA BamMC406_R0089 NC_010557.1 246165 246241 R tRNA-Ile complement(246165..246241) Burkholderia ambifaria MC40-6 6182386 BamMC406_R0001 rRNA BamMC406_R0001 NC_010551.1 18347 18459 R 5S ribosomal RNA complement(18347..18459) Burkholderia ambifaria MC40-6 6176771 BamMC406_R0002 rRNA BamMC406_R0002 NC_010551.1 18688 21569 R 23S ribosomal RNA complement(18688..21569) Burkholderia ambifaria MC40-6 6177231 BamMC406_R0003 rRNA BamMC406_R0003 NC_010551.1 21951 23476 R 16S ribosomal RNA complement(21951..23476) Burkholderia ambifaria MC40-6 6176398 BamMC406_R0007 rRNA BamMC406_R0007 NC_010551.1 298925 300450 D 16S ribosomal RNA 298925..300450 Burkholderia ambifaria MC40-6 6177658 BamMC406_R0010 rRNA BamMC406_R0010 NC_010551.1 301054 303935 D 23S ribosomal RNA 301054..303935 Burkholderia ambifaria MC40-6 6177933 BamMC406_R0011 rRNA BamMC406_R0011 NC_010551.1 304123 304235 D 5S ribosomal RNA 304123..304235 Burkholderia ambifaria MC40-6 6177982 BamMC406_R0017 rRNA BamMC406_R0017 NC_010551.1 531562 533087 D 16S ribosomal RNA 531562..533087 Burkholderia ambifaria MC40-6 6177811 BamMC406_R0020 rRNA BamMC406_R0020 NC_010551.1 533673 536554 D 23S ribosomal RNA 533673..536554 Burkholderia ambifaria MC40-6 6178535 BamMC406_R0021 rRNA BamMC406_R0021 NC_010551.1 536708 536820 D 5S ribosomal RNA 536708..536820 Burkholderia ambifaria MC40-6 6177669 BamMC406_R0063 rRNA BamMC406_R0063 NC_010551.1 2380929 2381041 R 5S ribosomal RNA complement(2380929..2381041) Burkholderia ambifaria MC40-6 6176896 BamMC406_R0064 rRNA BamMC406_R0064 NC_010551.1 2381195 2384076 R 23S ribosomal RNA complement(2381195..2384076) Burkholderia ambifaria MC40-6 6177152 BamMC406_R0067 rRNA BamMC406_R0067 NC_010551.1 2384659 2386184 R 16S ribosomal RNA complement(2384659..2386184) Burkholderia ambifaria MC40-6 6175967 BamMC406_R0081 rRNA BamMC406_R0081 NC_010552.1 2374057 2374169 R 5S ribosomal RNA complement(2374057..2374169) Burkholderia ambifaria MC40-6 6180892 BamMC406_R0082 rRNA BamMC406_R0082 NC_010552.1 2374325 2377206 R 23S ribosomal RNA complement(2374325..2377206) Burkholderia ambifaria MC40-6 6181302 BamMC406_R0085 rRNA BamMC406_R0085 NC_010552.1 2377799 2379324 R 16S ribosomal RNA complement(2377799..2379324) Burkholderia ambifaria MC40-6 6181045 BamMC406_R0086 rRNA BamMC406_R0086 NC_010557.1 242560 242672 R 5S ribosomal RNA complement(242560..242672) Burkholderia ambifaria MC40-6 6181914 BamMC406_R0087 rRNA BamMC406_R0087 NC_010557.1 242828 245709 R 23S ribosomal RNA complement(242828..245709) Burkholderia ambifaria MC40-6 6182384 BamMC406_R0090 rRNA BamMC406_R0090 NC_010557.1 246305 247830 R 16S ribosomal RNA complement(246305..247830) Burkholderia ambifaria MC40-6 6182387