-- dump date 20240506_012215 -- class Genbank::Contig -- table contig_comment -- id comment NC_020453.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to AP012603.1.REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 dataREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil.REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/ConsedREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5xREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX TitaniumREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78 Pseudo Genes (ambiguous residues) :: 0 of 78REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78 Pseudo Genes (ambiguous residues) :: 0 of 78 Pseudo Genes (frameshifted) :: 30 of 78REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78 Pseudo Genes (ambiguous residues) :: 0 of 78 Pseudo Genes (frameshifted) :: 30 of 78 Pseudo Genes (incomplete) :: 61 of 78REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78 Pseudo Genes (ambiguous residues) :: 0 of 78 Pseudo Genes (frameshifted) :: 30 of 78 Pseudo Genes (incomplete) :: 61 of 78 Pseudo Genes (internal stop) :: 10 of 78REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78 Pseudo Genes (ambiguous residues) :: 0 of 78 Pseudo Genes (frameshifted) :: 30 of 78 Pseudo Genes (incomplete) :: 61 of 78 Pseudo Genes (internal stop) :: 10 of 78 Pseudo Genes (multiple problems) :: 19 of 78REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78 Pseudo Genes (ambiguous residues) :: 0 of 78 Pseudo Genes (frameshifted) :: 30 of 78 Pseudo Genes (incomplete) :: 61 of 78 Pseudo Genes (internal stop) :: 10 of 78 Pseudo Genes (multiple problems) :: 19 of 78 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to AP012603.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ the hybrid assembly of Sanger and 454 data an oligotrophic bacterium isolated from paddy field soil. ##Genome-Assembly-Data-START## Assembly Method :: Newbler; Phred/Phrap/Consed Genome Coverage :: 4.5x Sequencing Technology :: ABI 3730xl; Roche 454 GS FLX Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 11:19:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,274 CDSs (total) :: 7,210 Genes (coding) :: 7,132 CDSs (with protein) :: 7,132 Genes (RNA) :: 64 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78 Pseudo Genes (ambiguous residues) :: 0 of 78 Pseudo Genes (frameshifted) :: 30 of 78 Pseudo Genes (incomplete) :: 61 of 78 Pseudo Genes (internal stop) :: 10 of 78 Pseudo Genes (multiple problems) :: 19 of 78 ##Genome-Annotation-Data-END## COMPLETENESS: full length.