-- dump date 20240506_002309 -- class Genbank::Contig -- table contig_comment -- id comment NC_014150.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001959.1.REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: CanadaREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microfloraREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: ChemoorganotrophREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequenceREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencingREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swineREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: SwineREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: HealthyREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tractREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tractREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39CREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequenceREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 14 of 28REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 14 of 28 Pseudo Genes (incomplete) :: 15 of 28REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 14 of 28 Pseudo Genes (incomplete) :: 15 of 28 Pseudo Genes (internal stop) :: 8 of 28REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 14 of 28 Pseudo Genes (incomplete) :: 15 of 28 Pseudo Genes (internal stop) :: 8 of 28 Pseudo Genes (multiple problems) :: 6 of 28REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 14 of 28 Pseudo Genes (incomplete) :: 15 of 28 Pseudo Genes (internal stop) :: 8 of 28 Pseudo Genes (multiple problems) :: 6 of 28 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 14 of 28 Pseudo Genes (incomplete) :: 15 of 28 Pseudo Genes (internal stop) :: 8 of 28 Pseudo Genes (multiple problems) :: 6 of 28 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001959.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083292 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Brachyspira murdochii 56-150, DSM 12563 collection_date :: 1992 lat_lon :: 52.939 -73.549 depth :: Missing alt_elev :: Missing country :: Canada environment :: Host, Intestinal microflora num_replicons :: 1 ref_biomaterial :: DSM 12563, ATCC 51284, CIP 105832 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished sequencing depth :: 19.7x Sanger, 48.9x pyrosequence GOLD Stamp ID :: Gc01276 Type Strain :: Yes Greengenes ID :: 88867 Funding Program :: DOE-GEBA 2007 Number of Reads :: 79829 Sanger, 861386 pyrosequencing Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: intestinal contents of healthy swine Host Name :: Swine Host Health :: Healthy Body Sample Site :: Gastrointestinal tract Body Sample Subsite :: Intestinal tract Cell Shape :: Spiral-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 39C Gram Staining :: gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 19.7x Sanger, 48.9x pyrosequence Sequencing Technology :: Sanger/454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/24/2023 09:37:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,898 CDSs (total) :: 2,857 Genes (coding) :: 2,829 CDSs (with protein) :: 2,829 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 14 of 28 Pseudo Genes (incomplete) :: 15 of 28 Pseudo Genes (internal stop) :: 8 of 28 Pseudo Genes (multiple problems) :: 6 of 28 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.