-- dump date 20240506_001454 -- class Genbank::Contig -- table contig_comment -- id comment NC_013172.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001643.1.REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIBREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGAREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernalREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litterREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30CREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: SoilREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24 CDSs (without protein) :: 24REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24 CDSs (without protein) :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24 CDSs (without protein) :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted) :: 11 of 24REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24 CDSs (without protein) :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted) :: 11 of 24 Pseudo Genes (incomplete) :: 12 of 24REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24 CDSs (without protein) :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted) :: 11 of 24 Pseudo Genes (incomplete) :: 12 of 24 Pseudo Genes (internal stop) :: 5 of 24REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24 CDSs (without protein) :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted) :: 11 of 24 Pseudo Genes (incomplete) :: 12 of 24 Pseudo Genes (internal stop) :: 5 of 24 Pseudo Genes (multiple problems) :: 4 of 24REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24 CDSs (without protein) :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted) :: 11 of 24 Pseudo Genes (incomplete) :: 12 of 24 Pseudo Genes (internal stop) :: 5 of 24 Pseudo Genes (multiple problems) :: 4 of 24 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001643.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082369 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Brachybacterium faecium 6-10, DSM 4810 Culture Collection ID :: DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 GOLD Stamp ID :: Gc01028 Greengenes ID :: 12526 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler 1.1.02.15, PGA Sequencing Depth :: 10x Sanger; 40x 454 Gene Calling Method :: Genemark 4.6b, tRNAScan-SE-1.23, infernal 0.81 Isolation Site :: Poultry deep litter Collection Date :: 1966 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25-30C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:23:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,189 CDSs (total) :: 3,127 Genes (coding) :: 3,103 CDSs (with protein) :: 3,103 Genes (RNA) :: 62 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 24 CDSs (without protein) :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted) :: 11 of 24 Pseudo Genes (incomplete) :: 12 of 24 Pseudo Genes (internal stop) :: 5 of 24 Pseudo Genes (multiple problems) :: 4 of 24 ##Genome-Annotation-Data-END## COMPLETENESS: full length.