-- dump date 20140619_004838 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 412418000001 SEQ_END SEQ_END NC_011244.1 930981 930981 DR NC_011244.1; contig end 930981..930981 Borrelia recurrentis A1 412418000002 SEQ_END SEQ_END NC_011246.1 123937 123937 DR NC_011246.1; contig end 123937..123937 Borrelia recurrentis A1 412418000003 SEQ_END SEQ_END NC_011252.1 22945 22945 DR NC_011252.1; contig end 22945..22945 Borrelia recurrentis A1 412418000004 SEQ_END SEQ_END NC_011253.1 33213 33213 DR NC_011253.1; contig end 33213..33213 Borrelia recurrentis A1 412418000005 SEQ_END SEQ_END NC_011255.1 35315 35315 DR NC_011255.1; contig end 35315..35315 Borrelia recurrentis A1 412418000006 SEQ_END SEQ_END NC_011258.1 36869 36869 DR NC_011258.1; contig end 36869..36869 Borrelia recurrentis A1 412418000007 SEQ_END SEQ_END NC_011260.1 52772 52772 DR NC_011260.1; contig end 52772..52772 Borrelia recurrentis A1 412418000008 SEQ_END SEQ_END NC_011263.1 6131 6131 DR NC_011263.1; contig end 6131..6131 Borrelia recurrentis A1 YP_002222487.1 CDS vlp-a NC_011244.1 2174 3295 R vlp protein, alpha subfamily complement(2174..3295) Borrelia recurrentis A1 6918628 YP_002222488.1 CDS vlp-d NC_011244.1 6895 7989 R vlp protein, delta subfamily complement(6895..7989) Borrelia recurrentis A1 6918629 YP_002222489.1 CDS BRE_6 NC_011244.1 12958 13524 D hypothetical protein 12958..13524 Borrelia recurrentis A1 6918631 YP_002222490.1 CDS BRE_7 NC_011244.1 13640 14737 R beta-N-acetylhexosaminidase, putative complement(13640..14737) Borrelia recurrentis A1 6918632 YP_002222491.1 CDS BRE_8 NC_011244.1 14670 16163 R 2 amidation motifs (Prosite); hypothetical protein complement(14670..16163) Borrelia recurrentis A1 6918633 YP_002222492.1 CDS femD NC_011244.1 16218 18008 D phosphoglucomutase 16218..18008 Borrelia recurrentis A1 6918634 YP_002222493.1 CDS trsA NC_011244.1 18085 19137 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(18085..19137) Borrelia recurrentis A1 6918635 YP_002222494.1 CDS BRE_11 NC_011244.1 19134 20225 R hypothetical protein complement(19134..20225) Borrelia recurrentis A1 6918636 YP_002222495.1 CDS BRE_12 NC_011244.1 20338 21195 R hypothetical protein complement(20338..21195) Borrelia recurrentis A1 6918637 YP_002222496.1 CDS BRE_13 NC_011244.1 21315 22091 D LEUCINE_ZIPPER motif (Prosite); hypothetical protein 21315..22091 Borrelia recurrentis A1 6918638 YP_002222497.1 CDS BRE_14 NC_011244.1 22095 23087 D amidation motif (Prosite); hypothetical protein 22095..23087 Borrelia recurrentis A1 6918639 YP_002222498.1 CDS BRE_15 NC_011244.1 23080 23469 D holo-acyl-carrier protein synthase 23080..23469 Borrelia recurrentis A1 6918640 YP_002222499.1 CDS BRE_16 NC_011244.1 23473 24321 D hypothetical protein 23473..24321 Borrelia recurrentis A1 6918641 YP_002222500.1 CDS truA NC_011244.1 24322 25059 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 24322..25059 Borrelia recurrentis A1 6918642 YP_002222501.1 CDS BRE_18 NC_011244.1 25052 25621 D hypothetical protein 25052..25621 Borrelia recurrentis A1 6918643 YP_002222502.1 CDS priA NC_011244.1 25614 27590 D primosomal protein N 25614..27590 Borrelia recurrentis A1 6918644 YP_002222503.1 CDS udk NC_011244.1 27587 28207 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(27587..28207) Borrelia recurrentis A1 6918645 YP_002222504.1 CDS glpE NC_011244.1 28200 28589 R GlpE protein (GlpE) complement(28200..28589) Borrelia recurrentis A1 6918646 YP_002222505.1 CDS BRE_22 NC_011244.1 28718 29683 D amidation motif (Prosite); hypothetical protein 28718..29683 Borrelia recurrentis A1 6918647 YP_002222506.1 CDS BRE_23 NC_011244.1 29680 30660 R ribosomal large subunit pseudouridine synthase D complement(29680..30660) Borrelia recurrentis A1 6918648 YP_002222507.1 CDS BRE_24 NC_011244.1 30661 31167 R hypothetical protein complement(30661..31167) Borrelia recurrentis A1 6918649 YP_002222508.1 CDS pfpB NC_011244.1 31175 32839 R catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase complement(31175..32839) Borrelia recurrentis A1 6918650 YP_002222509.1 CDS queA NC_011244.1 32909 33967 R S-adenosylmethionine-tRNA ribosyltransferase-isomerase (queuine synthetase) complement(32909..33967) Borrelia recurrentis A1 6918651 YP_002222510.1 CDS ruvB NC_011244.1 33951 34973 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(33951..34973) Borrelia recurrentis A1 6918652 YP_002222511.1 CDS ruvA NC_011244.1 35026 35616 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(35026..35616) Borrelia recurrentis A1 6918653 YP_002222512.1 CDS BRE_29 NC_011244.1 35699 36430 R hypothetical protein complement(35699..36430) Borrelia recurrentis A1 6918654 YP_002222513.1 CDS folD NC_011244.1 36431 37372 R methylenetetrahydrofolate dehydrogenase complement(36431..37372) Borrelia recurrentis A1 6918655 YP_002222514.1 CDS BRE_31 NC_011244.1 37501 38136 D MICROBODIES_CTER motif (Prosite); hypothetical protein 37501..38136 Borrelia recurrentis A1 6918656 YP_002222515.1 CDS BRE_32 NC_011244.1 38144 39175 D hypothetical protein 38144..39175 Borrelia recurrentis A1 6918657 YP_002222516.1 CDS BRE_33 NC_011244.1 39161 39592 R hypothetical protein complement(39161..39592) Borrelia recurrentis A1 6918658 YP_002222517.1 CDS lepB-1 NC_011244.1 39582 40217 R signal peptidase I complement(39582..40217) Borrelia recurrentis A1 6918659 YP_002222518.1 CDS lepB-2 NC_011244.1 40218 41198 R signal peptidase I complement(40218..41198) Borrelia recurrentis A1 6918660 YP_002222519.1 CDS BRE_36 NC_011244.1 41400 42872 D hypothetical protein 41400..42872 Borrelia recurrentis A1 6918661 YP_002222520.1 CDS smpB NC_011244.1 42875 43324 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 42875..43324 Borrelia recurrentis A1 6918662 YP_002222521.1 CDS BRE_38 NC_011244.1 43481 44083 R hypothetical protein complement(43481..44083) Borrelia recurrentis A1 6918663 YP_002222522.1 CDS parC NC_011244.1 44104 45987 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(44104..45987) Borrelia recurrentis A1 6918664 YP_002222523.1 CDS parE NC_011244.1 45987 47783 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(45987..47783) Borrelia recurrentis A1 6918665 YP_002222524.1 CDS plsC NC_011244.1 47795 48547 R 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(47795..48547) Borrelia recurrentis A1 6918666 YP_002222525.1 CDS BRE_42 NC_011244.1 48555 50015 R Probable lipoprotein (SpLip); putative lipoprotein complement(48555..50015) Borrelia recurrentis A1 6918667 YP_002222526.1 CDS BRE_43 NC_011244.1 50078 51586 R hypothetical protein complement(50078..51586) Borrelia recurrentis A1 6918668 YP_002222527.1 CDS cheR-1 NC_011244.1 51775 52647 D chemotaxis protein methyltransferase 51775..52647 Borrelia recurrentis A1 6918669 YP_002222528.1 CDS phoU NC_011244.1 52681 53358 R phosphate transport system regulatory protein complement(52681..53358) Borrelia recurrentis A1 6918670 YP_002222529.1 CDS BRE_46 NC_011244.1 53365 54414 R hypothetical protein complement(53365..54414) Borrelia recurrentis A1 6918671 YP_002222530.1 CDS BRE_47 NC_011244.1 54411 54797 R hypothetical protein complement(54411..54797) Borrelia recurrentis A1 6918672 YP_002222531.1 CDS BRE_48 NC_011244.1 54825 57290 R ATP_GTP_A and LEUCINE_ZIPPER motif (Prosite); P115 protein complement(54825..57290) Borrelia recurrentis A1 6918673 YP_002222532.1 CDS rnhB NC_011244.1 57348 57893 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 57348..57893 Borrelia recurrentis A1 6918674 YP_002222533.1 CDS BRE_50 NC_011244.1 57974 58267 R hypothetical protein complement(57974..58267) Borrelia recurrentis A1 6918675 YP_002222534.1 CDS BRE_53 NC_011244.1 58999 59709 D hypothetical protein 58999..59709 Borrelia recurrentis A1 6918678 YP_002222535.1 CDS BRE_54 NC_011244.1 59754 60449 D hypothetical protein 59754..60449 Borrelia recurrentis A1 6918679 YP_002222536.1 CDS spoU NC_011244.1 60424 61080 R spoU protein complement(60424..61080) Borrelia recurrentis A1 6918680 YP_002222537.1 CDS ung NC_011244.1 61174 61845 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 61174..61845 Borrelia recurrentis A1 6918681 YP_002222538.1 CDS secG NC_011244.1 61903 62265 R preprotein translocase subunit SecG complement(61903..62265) Borrelia recurrentis A1 6918682 YP_002222539.1 CDS tpiA NC_011244.1 62271 63035 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(62271..63035) Borrelia recurrentis A1 6918683 YP_002222540.1 CDS pgk NC_011244.1 63037 64215 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(63037..64215) Borrelia recurrentis A1 6918684 YP_002222541.1 CDS gap NC_011244.1 64245 65252 R glyceraldehyde 3-phosphate dehydrogenase (GAPDH) complement(64245..65252) Borrelia recurrentis A1 6918685 YP_002222542.1 CDS BRE_61 NC_011244.1 65325 67310 R hypothetical protein complement(65325..67310) Borrelia recurrentis A1 6918686 YP_002222543.1 CDS tlyC NC_011244.1 67307 68086 R hemolysin complement(67307..68086) Borrelia recurrentis A1 6918687 YP_002222544.1 CDS BRE_63 NC_011244.1 68083 68529 R UPF0054 motif (Prosite); putative metalloprotease complement(68083..68529) Borrelia recurrentis A1 6918688 YP_002222545.1 CDS trxA NC_011244.1 68616 68969 R thioredoxin complement(68616..68969) Borrelia recurrentis A1 6918689 YP_002222546.1 CDS BRE_65 NC_011244.1 69047 69766 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 69047..69766 Borrelia recurrentis A1 6918690 YP_002222547.1 CDS BRE_66 NC_011244.1 69840 70895 R hypothetical protein complement(69840..70895) Borrelia recurrentis A1 6918691 YP_002222548.1 CDS fmt NC_011244.1 70923 71852 R methionyl-tRNA formyltransferase complement(70923..71852) Borrelia recurrentis A1 6918692 YP_002222549.1 CDS def NC_011244.1 71849 72346 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(71849..72346) Borrelia recurrentis A1 6918693 YP_002222550.1 CDS BRE_69 NC_011244.1 72374 73069 R hypothetical protein complement(72374..73069) Borrelia recurrentis A1 6918694 YP_002222551.1 CDS BRE_70 NC_011244.1 73066 74844 R MICROBODIES_CTER and DDC_GAD_HDC_YDC motifs (Prosite); peptidase, putative complement(73066..74844) Borrelia recurrentis A1 6918695 YP_002222552.1 CDS BRE_71 NC_011244.1 74968 75861 D COF_1 and COF_2 motifs (Prosite); hypothetical protein 74968..75861 Borrelia recurrentis A1 6918696 YP_002222553.1 CDS BRE_72 NC_011244.1 75875 77113 D aminopeptidase II 75875..77113 Borrelia recurrentis A1 6918697 YP_002222554.1 CDS BRE_73 NC_011244.1 77138 77611 D hypothetical protein 77138..77611 Borrelia recurrentis A1 6918698 YP_002222555.1 CDS BRE_74 NC_011244.1 77639 79105 D Probable lipoprotein (SpLip); hypothetical protein 77639..79105 Borrelia recurrentis A1 6918699 YP_002222556.1 CDS BRE_75 NC_011244.1 79105 81420 D hypothetical protein 79105..81420 Borrelia recurrentis A1 6918700 YP_002222557.1 CDS BRE_76 NC_011244.1 81417 81989 D hypothetical protein 81417..81989 Borrelia recurrentis A1 6918701 YP_002222558.1 CDS prfB NC_011244.1 82023 83066 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 82023..83066 Borrelia recurrentis A1 6918702 YP_002222559.1 CDS BRE_78 NC_011244.1 83048 84457 D hypothetical protein 83048..84457 Borrelia recurrentis A1 6918703 YP_002222560.1 CDS ftsY NC_011244.1 84509 85354 D signal recognition particle-docking protein 84509..85354 Borrelia recurrentis A1 6918704 YP_002222561.1 CDS BRE_80 NC_011244.1 85351 86406 D hypothetical protein 85351..86406 Borrelia recurrentis A1 6918705 YP_002222562.1 CDS BRE_81 NC_011244.1 86393 87643 D lipoprotein releasing system, permease protein, putative 86393..87643 Borrelia recurrentis A1 6918706 YP_002222563.1 CDS BRE_82 NC_011244.1 87644 88333 D ABC transporter, ATP-binding protein 87644..88333 Borrelia recurrentis A1 6918707 YP_002222564.1 CDS BRE_83 NC_011244.1 88330 89580 D ABC transporter, permease protein 88330..89580 Borrelia recurrentis A1 6918708 YP_002222565.1 CDS BRE_84 NC_011244.1 89601 90887 R hypothetical protein complement(89601..90887) Borrelia recurrentis A1 6918709 YP_002222566.1 CDS BRE_85 NC_011244.1 90880 91197 R hypothetical protein complement(90880..91197) Borrelia recurrentis A1 6918710 YP_002222567.1 CDS nifS NC_011244.1 91362 92630 D nifS protein 91362..92630 Borrelia recurrentis A1 6918711 YP_002222568.1 CDS BRE_87 NC_011244.1 92776 93171 D hypothetical protein 92776..93171 Borrelia recurrentis A1 6918712 YP_002222569.1 CDS BRE_88 NC_011244.1 93126 94733 D ATP_GTP_A motif (Prosite); magnesium chelatase family protein 93126..94733 Borrelia recurrentis A1 6918713 YP_002222570.1 CDS ldh NC_011244.1 94756 95718 R L-lactate dehydrogenase complement(94756..95718) Borrelia recurrentis A1 6918714 YP_002222571.1 CDS lepA NC_011244.1 95896 97563 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(95896..97563) Borrelia recurrentis A1 6918715 YP_002222572.1 CDS BRE_91 NC_011244.1 97742 98746 R RGD motif (Prosite); hypothetical protein complement(97742..98746) Borrelia recurrentis A1 6918716 YP_002222573.1 CDS atpK NC_011244.1 98783 99217 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(98783..99217) Borrelia recurrentis A1 6918717 YP_002222574.1 CDS atpI NC_011244.1 99237 101072 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(99237..101072) Borrelia recurrentis A1 6918718 YP_002222575.1 CDS atpD NC_011244.1 101077 101673 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(101077..101673) Borrelia recurrentis A1 6918719 YP_002222576.1 CDS atpB NC_011244.1 101676 102983 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(101676..102983) Borrelia recurrentis A1 6918720 YP_002222577.1 CDS atpA NC_011244.1 102987 104717 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(102987..104717) Borrelia recurrentis A1 6918721 YP_002222578.1 CDS BRE_97 NC_011244.1 104728 105273 R uncharacterized conserved motif-containing protein complement(104728..105273) Borrelia recurrentis A1 6918722 YP_002222579.1 CDS atpE NC_011244.1 105283 105879 R produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E complement(105283..105879) Borrelia recurrentis A1 6918723 YP_002222580.1 CDS BRE_99 NC_011244.1 105986 106381 R hypothetical protein complement(105986..106381) Borrelia recurrentis A1 6918724 YP_002222581.1 CDS BRE_101 NC_011244.1 108689 109630 R ATP_GTP_A motif (Prosite); hypothetical protein complement(108689..109630) Borrelia recurrentis A1 6918726 YP_002222582.1 CDS murI NC_011244.1 109627 110391 R glutamate racemase complement(109627..110391) Borrelia recurrentis A1 6918727 YP_002222583.1 CDS asnC NC_011244.1 110510 111895 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 110510..111895 Borrelia recurrentis A1 6918728 YP_002222584.1 CDS BRE_104 NC_011244.1 111923 112471 D hypothetical protein 111923..112471 Borrelia recurrentis A1 6918729 YP_002222585.1 CDS BRE_105 NC_011244.1 112474 113064 R predicted phosphoribosyltransferases; hypothetical protein complement(112474..113064) Borrelia recurrentis A1 6918730 YP_002222586.1 CDS htrA NC_011244.1 113414 114871 R periplasmic serine protease DO complement(113414..114871) Borrelia recurrentis A1 6918731 YP_002222587.1 CDS map NC_011244.1 114912 115664 R methionine aminopeptidase complement(114912..115664) Borrelia recurrentis A1 6918732 YP_002222588.1 CDS BRE_108 NC_011244.1 115669 117318 R hypothetical protein complement(115669..117318) Borrelia recurrentis A1 6918733 YP_002222589.1 CDS nusB NC_011244.1 117305 117745 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(117305..117745) Borrelia recurrentis A1 6918734 YP_002222590.1 CDS BRE_110 NC_011244.1 117764 118774 R RGD motif (Prosite); basic membrane protein complement(117764..118774) Borrelia recurrentis A1 6918735 YP_002222591.1 CDS fadA NC_011244.1 118865 120058 R acetyl-CoA C-acetyltransferase complement(118865..120058) Borrelia recurrentis A1 6918736 YP_002222592.1 CDS BRE_112 NC_011244.1 120249 121604 D RGD motif (Prosite); hypothetical protein 120249..121604 Borrelia recurrentis A1 6918737 YP_002222593.1 CDS dnaB NC_011244.1 121645 123039 R replicative DNA helicase complement(121645..123039) Borrelia recurrentis A1 6918738 YP_002222594.1 CDS rplI NC_011244.1 123058 123552 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(123058..123552) Borrelia recurrentis A1 6918739 YP_002222595.1 CDS rpsR NC_011244.1 123566 123856 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(123566..123856) Borrelia recurrentis A1 6918740 YP_002222596.1 CDS ssb NC_011244.1 123869 124309 R single-stranded DNA-binding protein complement(123869..124309) Borrelia recurrentis A1 6918741 YP_002222597.1 CDS rpsF NC_011244.1 124321 124725 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(124321..124725) Borrelia recurrentis A1 6918742 YP_002222598.1 CDS BRE_120 NC_011244.1 128044 129324 R ZINC_PROTEASE and amidation motifs (Prosite); zinc protease, putative complement(128044..129324) Borrelia recurrentis A1 6918745 YP_002222599.1 CDS cdsA NC_011244.1 129341 130306 R phosphatidate cytidylyltransferase complement(129341..130306) Borrelia recurrentis A1 6918746 YP_002222600.1 CDS uppS NC_011244.1 130194 130886 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(130194..130886) Borrelia recurrentis A1 6918747 YP_002222601.1 CDS frr NC_011244.1 130891 131445 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(130891..131445) Borrelia recurrentis A1 6918748 YP_002222602.1 CDS tsf NC_011244.1 131483 132319 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(131483..132319) Borrelia recurrentis A1 6918749 YP_002222603.1 CDS rpsB NC_011244.1 132341 133105 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(132341..133105) Borrelia recurrentis A1 6918750 YP_002222604.1 CDS maf NC_011244.1 133141 133740 R maf protein complement(133141..133740) Borrelia recurrentis A1 6918751 YP_002222605.1 CDS BRE_127 NC_011244.1 133730 134008 R hypothetical protein complement(133730..134008) Borrelia recurrentis A1 6918752 YP_002222606.1 CDS BRE_128 NC_011244.1 134022 134696 R hypothetical protein complement(134022..134696) Borrelia recurrentis A1 6918753 YP_002222607.1 CDS BRE_129 NC_011244.1 134816 135418 R hypothetical protein complement(134816..135418) Borrelia recurrentis A1 6918754 YP_002222608.1 CDS rpsA NC_011244.1 135411 137078 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(135411..137078) Borrelia recurrentis A1 6918755 YP_002222609.1 CDS cmk NC_011244.1 137086 137742 R cytidylate kinase complement(137086..137742) Borrelia recurrentis A1 6918756 YP_002222610.1 CDS BRE_132 NC_011244.1 137739 138485 R pseudouridylate synthase complement(137739..138485) Borrelia recurrentis A1 6918757 YP_002222611.1 CDS BRE_133 NC_011244.1 138457 139230 R hypothetical protein complement(138457..139230) Borrelia recurrentis A1 6918758 YP_002222612.1 CDS greA NC_011244.1 140341 143043 R contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein complement(140341..143043) Borrelia recurrentis A1 6918760 YP_002222613.1 CDS BRE_136 NC_011244.1 143079 144023 R hypothetical protein complement(143079..144023) Borrelia recurrentis A1 6918761 YP_002222614.1 CDS BRE_137 NC_011244.1 144210 145355 D hypothetical protein 144210..145355 Borrelia recurrentis A1 6918762 YP_002222615.1 CDS hisS NC_011244.1 145395 146765 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(145395..146765) Borrelia recurrentis A1 6918763 YP_002222616.1 CDS pbp-1 NC_011244.1 146905 148785 D penicillin-binding protein 146905..148785 Borrelia recurrentis A1 6918764 YP_002222617.1 CDS BRE_140 NC_011244.1 148787 150676 R long-chain-fatty-acid CoA ligase complement(148787..150676) Borrelia recurrentis A1 6918765 YP_002222618.1 CDS BRE_141 NC_011244.1 150892 151185 R hypothetical protein complement(150892..151185) Borrelia recurrentis A1 6918766 YP_002222619.1 CDS acrB NC_011244.1 151198 154437 R acriflavine resistance protein complement(151198..154437) Borrelia recurrentis A1 6918767 YP_002222620.1 CDS mtrC NC_011244.1 154441 155247 R membrane fusion protein complement(154441..155247) Borrelia recurrentis A1 6918768 YP_002222621.1 CDS BRE_144 NC_011244.1 155427 156794 R LEUCINE_ZIPPER motif (Prosite); hypothetical protein complement(155427..156794) Borrelia recurrentis A1 6918769 YP_002222622.1 CDS hlyA NC_011244.1 156784 157086 D hypothetical protein 156784..157086 Borrelia recurrentis A1 6918770 YP_002222623.1 CDS proX NC_011244.1 157075 157971 R Probable lipoprotein (SpLip); glycine betaine/L-proline transport system substrate-binding protein; lipoprotein complement(157075..157971) Borrelia recurrentis A1 6918771 YP_002222624.1 CDS proW NC_011244.1 158008 158907 R glycine betaine/L-proline transport system permease protein complement(158008..158907) Borrelia recurrentis A1 6918772 YP_002222625.1 CDS proV NC_011244.1 158914 160032 R glycine betaine/L-proline transport system ATP-binding protein complement(158914..160032) Borrelia recurrentis A1 6918773 YP_002222626.1 CDS flaB NC_011244.1 160157 161164 R structural flagella protein; flagellin complement(160157..161164) Borrelia recurrentis A1 6918774 YP_002222627.1 CDS fliD NC_011244.1 161292 163292 R involved in flagellin assembly; flagellar hook-associated protein FliD complement(161292..163292) Borrelia recurrentis A1 6918775 YP_002222628.1 CDS nagA NC_011244.1 163467 164672 D N-acetylglucosamine-6-phosphate deacetylase 163467..164672 Borrelia recurrentis A1 6918776 YP_002222629.1 CDS nagB NC_011244.1 164672 165508 D catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 164672..165508 Borrelia recurrentis A1 6918777 YP_002222630.1 CDS sodA NC_011244.1 165664 166275 R superoxide dismutase complement(165664..166275) Borrelia recurrentis A1 6918778 YP_002222631.1 CDS secA NC_011244.1 166291 168999 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(166291..168999) Borrelia recurrentis A1 6918779 YP_002222632.1 CDS BRE_155 NC_011244.1 169051 170184 D putative lipoprotein 169051..170184 Borrelia recurrentis A1 6919361 YP_002222633.1 CDS BRE_156 NC_011244.1 170206 170631 D hypothetical protein 170206..170631 Borrelia recurrentis A1 6919362 YP_002222634.1 CDS BRE_157 NC_011244.1 170635 171051 D hypothetical protein 170635..171051 Borrelia recurrentis A1 6919363 YP_002222635.1 CDS alr NC_011244.1 171145 172257 D alanine racemase 171145..172257 Borrelia recurrentis A1 6919364 YP_002222636.1 CDS BRE_159 NC_011244.1 172249 173934 R hypothetical protein complement(172249..173934) Borrelia recurrentis A1 6919365 YP_002222637.1 CDS BRE_160 NC_011244.1 173918 174085 D hypothetical protein 173918..174085 Borrelia recurrentis A1 6919366 YP_002222638.1 CDS BRE_161 NC_011244.1 174090 175847 R hypothetical protein complement(174090..175847) Borrelia recurrentis A1 6919367 YP_002222639.1 CDS BRE_162 NC_011244.1 175923 176900 R Na+/Ca+ exchange protein complement(175923..176900) Borrelia recurrentis A1 6919368 YP_002222640.1 CDS BRE_163 NC_011244.1 176925 178790 R hypothetical protein complement(176925..178790) Borrelia recurrentis A1 6919369 YP_002222641.1 CDS tpn50 NC_011244.1 180493 181650 D outer membrane protein 180493..181650 Borrelia recurrentis A1 6919371 YP_002222642.1 CDS BRE_166 NC_011244.1 181654 182037 R DnaK suppressor complement(181654..182037) Borrelia recurrentis A1 6919372 YP_002222643.1 CDS infA NC_011244.1 182206 182427 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 182206..182427 Borrelia recurrentis A1 6919373 YP_002222644.1 CDS BRE_168 NC_011244.1 182472 184514 R 2 amidation motifs and one RGD (Prosite); hypothetical protein complement(182472..184514) Borrelia recurrentis A1 6919374 YP_002222645.1 CDS BRE_169 NC_011244.1 184463 185050 R RGD motif (Prosite); Probable lipoprotein (SpLip); hypothetical protein complement(184463..185050) Borrelia recurrentis A1 6919375 YP_002222646.1 CDS BRE_170 NC_011244.1 185032 186021 R hypothetical protein complement(185032..186021) Borrelia recurrentis A1 6919376 YP_002222647.1 CDS BRE_171 NC_011244.1 186018 187043 R hypothetical protein complement(186018..187043) Borrelia recurrentis A1 6919377 YP_002222648.1 CDS BRE_172 NC_011244.1 187006 187914 R hypothetical protein complement(187006..187914) Borrelia recurrentis A1 6919378 YP_002222649.1 CDS BRE_173 NC_011244.1 187911 188798 R hypothetical protein complement(187911..188798) Borrelia recurrentis A1 6919379 YP_002222650.1 CDS moxR NC_011244.1 188806 189798 R methanol dehydrogenase regulator complement(188806..189798) Borrelia recurrentis A1 6919380 YP_002222651.1 CDS gidB NC_011244.1 189868 190500 R glucose inhibited division protein B complement(189868..190500) Borrelia recurrentis A1 6919381 YP_002222652.1 CDS gidA NC_011244.1 190497 192377 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(190497..192377) Borrelia recurrentis A1 6919382 YP_002222653.1 CDS trmE NC_011244.1 192362 193756 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(192362..193756) Borrelia recurrentis A1 6919383 YP_002222654.1 CDS BRE_178 NC_011244.1 193895 194389 D putative flagellar protein 193895..194389 Borrelia recurrentis A1 6919384 YP_002222655.1 CDS flgK NC_011244.1 194408 196291 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 194408..196291 Borrelia recurrentis A1 6919385 YP_002222656.1 CDS flgL NC_011244.1 196295 197569 D With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 196295..197569 Borrelia recurrentis A1 6919386 YP_002222657.1 CDS BRE_181 NC_011244.1 197571 197963 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 197571..197963 Borrelia recurrentis A1 6919387 YP_002222658.1 CDS csrA NC_011244.1 197966 198202 D carbon storage regulator 197966..198202 Borrelia recurrentis A1 6919388 YP_002222659.1 CDS BRE_183 NC_011244.1 198187 198876 R hypothetical protein complement(198187..198876) Borrelia recurrentis A1 6919389 YP_002222660.1 CDS BRE_184 NC_011244.1 198830 199258 R ATP_GTP_A motif (Prosite); hypothetical protein complement(198830..199258) Borrelia recurrentis A1 6919390 YP_002222661.1 CDS BRE_185 NC_011244.1 199255 199554 R hypothetical protein complement(199255..199554) Borrelia recurrentis A1 6919391 YP_002222662.1 CDS rplT NC_011244.1 199720 200067 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(199720..200067) Borrelia recurrentis A1 6919392 YP_002222663.1 CDS rpmI NC_011244.1 200088 200285 R 50S ribosomal protein L35 complement(200088..200285) Borrelia recurrentis A1 6919393 YP_002222664.1 CDS infC NC_011244.1 200308 200868 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(200308..200868) Borrelia recurrentis A1 6919394 YP_002222665.1 CDS BRE_189 NC_011244.1 201046 201708 D hypothetical protein 201046..201708 Borrelia recurrentis A1 6919395 YP_002222666.1 CDS BRE_190 NC_011244.1 201708 202454 D Possible lipoprotein (SpLip); hypothetical protein 201708..202454 Borrelia recurrentis A1 6919396 YP_002222667.1 CDS BRE_191 NC_011244.1 202547 203344 R Tatd, Mg-dependent DNase complement(202547..203344) Borrelia recurrentis A1 6919397 YP_002222668.1 CDS BRE_192 NC_011244.1 203341 204483 R hypothetical protein complement(203341..204483) Borrelia recurrentis A1 6919398 YP_002222669.1 CDS prfA NC_011244.1 204782 205861 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 204782..205861 Borrelia recurrentis A1 6919399 YP_002222670.1 CDS BRE_194 NC_011244.1 205872 206705 D AMIDATION and N6_MTASE motifs (Prosite); HemK family methylase 205872..206705 Borrelia recurrentis A1 6919400 YP_002222671.1 CDS spoT NC_011244.1 206689 208692 D guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase 206689..208692 Borrelia recurrentis A1 6919401 YP_002222672.1 CDS BRE_196 NC_011244.1 208682 210925 D hypothetical protein 208682..210925 Borrelia recurrentis A1 6919402 YP_002222673.1 CDS ddlA NC_011244.1 210922 212016 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(210922..212016) Borrelia recurrentis A1 6919403 YP_002222674.1 CDS murE NC_011244.1 212021 213547 R UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate complement(212021..213547) Borrelia recurrentis A1 6919404 YP_002222675.1 CDS BRE_200 NC_011244.1 213853 215094 D hemolysin 213853..215094 Borrelia recurrentis A1 6919406 YP_002222676.1 CDS hflK NC_011244.1 215219 216151 D amidation motif (Prosite); Lambda CII stability-governing protein 215219..216151 Borrelia recurrentis A1 6919407 YP_002222677.1 CDS hflC NC_011244.1 216152 217123 D Lambda CII stability-governing protein 216152..217123 Borrelia recurrentis A1 6919408 YP_002222678.1 CDS BRE_204 NC_011244.1 217821 219359 D amidation motif (Prosite); hypothetical protein 217821..219359 Borrelia recurrentis A1 6919410 YP_002222679.1 CDS BRE_205 NC_011244.1 219364 219960 R N6-adenine-specific methylase, putative complement(219364..219960) Borrelia recurrentis A1 6919411 YP_002222680.1 CDS gtaB NC_011244.1 219995 220825 D UTP--glucose-1-phosphate uridylyltransferase 219995..220825 Borrelia recurrentis A1 6919412 YP_002222681.1 CDS BRE_207 NC_011244.1 220826 222541 D hypothetical protein 220826..222541 Borrelia recurrentis A1 6919413 YP_002222682.1 CDS BRE_208 NC_011244.1 222591 224867 D hypothetical protein 222591..224867 Borrelia recurrentis A1 6919414 YP_002222683.1 CDS lmp1 NC_011244.1 224860 227205 D surface-located membrane protein 1 224860..227205 Borrelia recurrentis A1 6919415 YP_002222684.1 CDS mutL NC_011244.1 227202 229037 D DNA mismatch repair protein 227202..229037 Borrelia recurrentis A1 6919416 YP_002222685.1 CDS BRE_211 NC_011244.1 229058 230098 D hypothetical protein 229058..230098 Borrelia recurrentis A1 6919417 YP_002222686.1 CDS BRE_213 NC_011244.1 230230 230883 R Probable lipoprotein (SpLip); putative lipoprotein complement(230230..230883) Borrelia recurrentis A1 6919419 YP_002222687.1 CDS efp NC_011244.1 230861 231439 R elongation factor EF-P complement(230861..231439) Borrelia recurrentis A1 6919420 YP_002222688.1 CDS pstS NC_011244.1 231505 232407 D phosphate ABC transporter, periplasmic phosphate-binding 231505..232407 Borrelia recurrentis A1 6919421 YP_002222689.1 CDS pstC NC_011244.1 232495 233403 D phosphate ABC transporter, permease protein 232495..233403 Borrelia recurrentis A1 6919422 YP_002222690.1 CDS pstA NC_011244.1 233400 234938 D phosphate ABC transporter, permease protein 233400..234938 Borrelia recurrentis A1 6919423 YP_002222691.1 CDS pstB NC_011244.1 234942 235706 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 234942..235706 Borrelia recurrentis A1 6919424 YP_002222692.1 CDS gufA NC_011244.1 235708 236529 R amidation motif (Prosite); GufA protein complement(235708..236529) Borrelia recurrentis A1 6919425 YP_002222693.1 CDS alaS NC_011244.1 236557 238335 R catalyzes a two-step reaction, first charging an alanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(236557..238335) Borrelia recurrentis A1 6919426 YP_002222694.1 CDS fliG-1 NC_011244.1 238335 239582 R flagellar motor switch protein complement(238335..239582) Borrelia recurrentis A1 6919427 YP_002222695.1 CDS pgl NC_011244.1 239557 240261 R 6-phosphogluconolactonase complement(239557..240261) Borrelia recurrentis A1 6919428 YP_002222696.1 CDS BRE_223 NC_011244.1 240278 240970 R hypothetical protein complement(240278..240970) Borrelia recurrentis A1 6919429 YP_002222697.1 CDS BRE_224 NC_011244.1 241040 242047 D tRNA-dihydrouridine synthase A 241040..242047 Borrelia recurrentis A1 6919430 YP_002222698.1 CDS serS NC_011244.1 242037 243311 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(242037..243311) Borrelia recurrentis A1 6919431 YP_002222699.1 CDS BRE_226 NC_011244.1 243439 244173 D Probable lipoprotein (SpLip); putative lipoprotein 243439..244173 Borrelia recurrentis A1 6919432 YP_002222700.1 CDS BRE_227 NC_011244.1 244186 247104 D amidation motif (Prosite); Zn-dependent peptidase, insulinase-like protein 244186..247104 Borrelia recurrentis A1 6919433 YP_002222701.1 CDS rpmE2 NC_011244.1 247132 247377 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B complement(247132..247377) Borrelia recurrentis A1 6919434 YP_002222702.1 CDS rho NC_011244.1 247435 248979 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(247435..248979) Borrelia recurrentis A1 6919435 YP_002222703.1 CDS BRE_230 NC_011244.1 249066 249473 R hypothetical protein complement(249066..249473) Borrelia recurrentis A1 6919436 YP_002222704.1 CDS BRE_231 NC_011244.1 249477 249803 R HISTONE_LIKE motif (Prosite); HbbU protein complement(249477..249803) Borrelia recurrentis A1 6919437 YP_002222705.1 CDS rpsT NC_011244.1 249815 250141 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(249815..250141) Borrelia recurrentis A1 6919438 YP_002222706.1 CDS BRE_233 NC_011244.1 250145 250966 R hypothetical protein complement(250145..250966) Borrelia recurrentis A1 6919439 YP_002222707.1 CDS BRE_234 NC_011244.1 250977 252083 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(250977..252083) Borrelia recurrentis A1 6919440 YP_002222708.1 CDS BRE_235 NC_011244.1 252108 254171 R amidation motif (Prosite); hypothetical protein complement(252108..254171) Borrelia recurrentis A1 6919441 YP_002222709.1 CDS lnt NC_011244.1 254271 255824 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 254271..255824 Borrelia recurrentis A1 6919442 YP_002222710.1 CDS BRE_237 NC_011244.1 255788 256564 R hypothetical protein complement(255788..256564) Borrelia recurrentis A1 6919443 YP_002222711.1 CDS dck NC_011244.1 256624 257244 R deoxyguanosine/deoxyadenosine kinase(I) subunit 2 complement(256624..257244) Borrelia recurrentis A1 6918780 YP_002222712.1 CDS glpF NC_011244.1 257950 258711 D glycerol uptake facilitator 257950..258711 Borrelia recurrentis A1 6918781 YP_002222713.1 CDS glpT NC_011244.1 260390 261745 D glycerol-3-phosphate transporter 260390..261745 Borrelia recurrentis A1 6918783 YP_002222714.1 CDS glpQ NC_011244.1 261831 262832 D Probable lipoprotein (SpLip); glycerophosphoryl diester phosphodiesterase, periplasmic precursor (glycerophosphodiester phosphodiesterase); lipoprotein 261831..262832 Borrelia recurrentis A1 6918784 YP_002222715.1 CDS BRE_244 NC_011244.1 264527 265021 R hypothetical protein complement(264527..265021) Borrelia recurrentis A1 6918786 YP_002222716.1 CDS BRE_245 NC_011244.1 265011 265562 R hypothetical protein complement(265011..265562) Borrelia recurrentis A1 6918787 YP_002222717.1 CDS BRE_246 NC_011244.1 265563 266588 R hypothetical protein complement(265563..266588) Borrelia recurrentis A1 6918788 YP_002222718.1 CDS BRE_247 NC_011244.1 266793 267392 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 266793..267392 Borrelia recurrentis A1 6918789 YP_002222719.1 CDS pepF NC_011244.1 267518 269287 D oligoendopeptidase F 267518..269287 Borrelia recurrentis A1 6918790 YP_002222720.1 CDS BRE_249 NC_011244.1 269302 270006 D Phosphatidylserine synthase 269302..270006 Borrelia recurrentis A1 6918791 YP_002222721.1 CDS dedA NC_011244.1 270017 270631 D DedA protein 270017..270631 Borrelia recurrentis A1 6918792 YP_002222722.1 CDS leuS NC_011244.1 270831 273359 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 270831..273359 Borrelia recurrentis A1 6918794 YP_002222723.1 CDS BRE_253 NC_011244.1 273370 275637 D MICROBODIES_CTER motif (Prosite); hypothetical protein 273370..275637 Borrelia recurrentis A1 6918795 YP_002222724.1 CDS lon-1 NC_011244.1 275700 278150 R ATP-dependent protease LA complement(275700..278150) Borrelia recurrentis A1 6918796 YP_002222725.1 CDS BRE_255 NC_011244.1 278219 278905 D hypothetical protein 278219..278905 Borrelia recurrentis A1 6918797 YP_002222726.1 CDS recJ1 NC_011244.1 278886 281045 D single-stranded-DNA-specific exonuclease 278886..281045 Borrelia recurrentis A1 6918798 YP_002222727.1 CDS BRE_257 NC_011244.1 281045 282001 D hypothetical protein 281045..282001 Borrelia recurrentis A1 6918799 YP_002222728.1 CDS rpsU NC_011244.1 282020 282229 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 282020..282229 Borrelia recurrentis A1 6918800 YP_002222729.1 CDS ftsK1 NC_011244.1 282279 284630 R FtsK/SpoIIIE family protein complement(282279..284630) Borrelia recurrentis A1 6918801 YP_002222730.1 CDS BRE_262 NC_011244.1 287819 288775 D Amidation motif (Prosite); hypothetical protein 287819..288775 Borrelia recurrentis A1 6918804 YP_002222731.1 CDS rpsU NC_011244.1 288794 289003 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 288794..289003 Borrelia recurrentis A1 6918805 YP_002222732.1 CDS ftsK2 NC_011244.1 289053 291404 R DNA segregation ATPase FtsK/SpoIIIE complement(289053..291404) Borrelia recurrentis A1 6918806 YP_002222733.1 CDS bacA NC_011244.1 291417 292217 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(291417..292217) Borrelia recurrentis A1 6918807 YP_002222734.1 CDS BRE_266 NC_011244.1 292231 294381 R Probable lipoprotein (SpLip); hypothetical protein complement(292231..294381) Borrelia recurrentis A1 6918808 YP_002222735.1 CDS BRE_267 NC_011244.1 294362 295567 R LEUCINE_ZIPPER motif (Prosite); hypothetical protein complement(294362..295567) Borrelia recurrentis A1 6918809 YP_002222736.1 CDS BRE_268 NC_011244.1 295727 297130 D hypothetical protein 295727..297130 Borrelia recurrentis A1 6918810 YP_002222737.1 CDS BRE_269 NC_011244.1 297132 298400 R putative membrane proteins related to metalloendopeptidases; hypothetical protein complement(297132..298400) Borrelia recurrentis A1 6918811 YP_002222738.1 CDS lepB-3 NC_011244.1 298470 298973 D signal peptidase I 298470..298973 Borrelia recurrentis A1 6918812 YP_002222739.1 CDS dnaK-1 NC_011244.1 299006 300514 R heat shock protein 70 complement(299006..300514) Borrelia recurrentis A1 6918813 YP_002222740.1 CDS BRE_272 NC_011244.1 300511 301008 R hypothetical protein complement(300511..301008) Borrelia recurrentis A1 6918814 YP_002222741.1 CDS BRE_273 NC_011244.1 301029 301340 R hypothetical protein complement(301029..301340) Borrelia recurrentis A1 6918815 YP_002222742.1 CDS BRE_274 NC_011244.1 301364 303262 R amidation motif (Prosite); hypothetical protein complement(301364..303262) Borrelia recurrentis A1 6918816 YP_002222743.1 CDS BRE_275 NC_011244.1 303265 303753 R amidation motif (Prosite); hypothetical protein complement(303265..303753) Borrelia recurrentis A1 6918817 YP_002222744.1 CDS ylxH-1 NC_011244.1 303760 304650 R ATP-binding protein complement(303760..304650) Borrelia recurrentis A1 6918818 YP_002222745.1 CDS flhF NC_011244.1 304660 305841 R Positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(304660..305841) Borrelia recurrentis A1 6918819 YP_002222746.1 CDS flhA NC_011244.1 305831 307918 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(305831..307918) Borrelia recurrentis A1 6918820 YP_002222747.1 CDS flhB NC_011244.1 307931 309052 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(307931..309052) Borrelia recurrentis A1 6918821 YP_002222748.1 CDS fliR NC_011244.1 309049 309837 R flagellar biosynthesis protein complement(309049..309837) Borrelia recurrentis A1 6918822 YP_002222749.1 CDS fliQ NC_011244.1 309854 310117 R flagellar biosynthesis protein complement(309854..310117) Borrelia recurrentis A1 6918823 YP_002222750.1 CDS fliP NC_011244.1 310126 310890 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(310126..310890) Borrelia recurrentis A1 6918824 YP_002222751.1 CDS fliZ NC_011244.1 310900 311532 R possible structural component of the flagellum that anchors the rod to the membrane; flagellar biosynthesis protein FliZ complement(310900..311532) Borrelia recurrentis A1 6918825 YP_002222752.1 CDS fliN NC_011244.1 311525 311869 R flagellar motor switch protein complement(311525..311869) Borrelia recurrentis A1 6918826 YP_002222753.1 CDS fliM NC_011244.1 311916 312974 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(311916..312974) Borrelia recurrentis A1 6918827 YP_002222754.1 CDS fliL NC_011244.1 312994 313530 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(312994..313530) Borrelia recurrentis A1 6918828 YP_002222755.1 CDS motB NC_011244.1 313574 314362 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(313574..314362) Borrelia recurrentis A1 6918829 YP_002222756.1 CDS motA NC_011244.1 314362 315147 R flagellar motor rotation protein A complement(314362..315147) Borrelia recurrentis A1 6918830 YP_002222757.1 CDS flbD NC_011244.1 315144 315365 R flagellar protein complement(315144..315365) Borrelia recurrentis A1 6918831 YP_002222758.1 CDS flgE NC_011244.1 315382 316707 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(315382..316707) Borrelia recurrentis A1 6918832 YP_002222759.1 CDS flgD NC_011244.1 316712 317152 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein complement(316712..317152) Borrelia recurrentis A1 6918833 YP_002222760.1 CDS flbC NC_011244.1 317165 318334 R flagellar protein complement(317165..318334) Borrelia recurrentis A1 6918834 YP_002222761.1 CDS flbB NC_011244.1 318338 318952 R flagellar protein complement(318338..318952) Borrelia recurrentis A1 6918835 YP_002222762.1 CDS flbA NC_011244.1 318945 319376 R flagellar protein complement(318945..319376) Borrelia recurrentis A1 6918836 YP_002222763.1 CDS fliI NC_011244.1 319373 320683 R flagellum-specific ATP synthase complement(319373..320683) Borrelia recurrentis A1 6918837 YP_002222764.1 CDS fliH NC_011244.1 320697 321623 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(320697..321623) Borrelia recurrentis A1 6918838 YP_002222765.1 CDS fliG NC_011244.1 321632 322666 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(321632..322666) Borrelia recurrentis A1 6918839 YP_002222766.1 CDS fliF NC_011244.1 322682 324388 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(322682..324388) Borrelia recurrentis A1 6918840 YP_002222767.1 CDS fliE NC_011244.1 324402 324731 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(324402..324731) Borrelia recurrentis A1 6918841 YP_002222768.1 CDS flgC NC_011244.1 324747 325211 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(324747..325211) Borrelia recurrentis A1 6918842 YP_002222769.1 CDS flgB NC_011244.1 325234 325641 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB complement(325234..325641) Borrelia recurrentis A1 6918843 YP_002222770.1 CDS hslU NC_011244.1 325674 327029 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(325674..327029) Borrelia recurrentis A1 6918844 YP_002222771.1 CDS hslV NC_011244.1 327026 327568 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(327026..327568) Borrelia recurrentis A1 6918845 YP_002222772.1 CDS BRE_305 NC_011244.1 328531 329220 R Probable lipoprotein (SpLip); putative lipoprotein complement(328531..329220) Borrelia recurrentis A1 6918847 YP_002222773.1 CDS ftsZ NC_011244.1 329221 330417 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(329221..330417) Borrelia recurrentis A1 6918848 YP_002222774.1 CDS ftsA NC_011244.1 330438 331679 R cell division protein complement(330438..331679) Borrelia recurrentis A1 6918849 YP_002222775.1 CDS divIB NC_011244.1 331679 332422 R cell division protein complement(331679..332422) Borrelia recurrentis A1 6918850 YP_002222776.1 CDS ftsW NC_011244.1 332454 333557 R cell division protein complement(332454..333557) Borrelia recurrentis A1 6918851 YP_002222777.1 CDS mraY NC_011244.1 333568 334623 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(333568..334623) Borrelia recurrentis A1 6918852 YP_002222778.1 CDS murF NC_011244.1 334647 336044 R UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase complement(334647..336044) Borrelia recurrentis A1 6918853 YP_002222779.1 CDS BRE_312 NC_011244.1 336060 336341 R hypothetical protein complement(336060..336341) Borrelia recurrentis A1 6918854 YP_002222780.1 CDS BRE_313 NC_011244.1 336334 337227 R S-adenosyl-methyltransferase complement(336334..337227) Borrelia recurrentis A1 6918855 YP_002222781.1 CDS BRE_314 NC_011244.1 337220 338050 R hypothetical protein complement(337220..338050) Borrelia recurrentis A1 6918856 YP_002222782.1 CDS BRE_315 NC_011244.1 338054 339142 R hypothetical protein complement(338054..339142) Borrelia recurrentis A1 6918857 YP_002222783.1 CDS BRE_316 NC_011244.1 339153 339911 R MULTICOPPER_OXIDASE1 motif (Prosite); hypothetical protein complement(339153..339911) Borrelia recurrentis A1 6918858 YP_002222784.1 CDS recN NC_011244.1 339943 341529 R DNA repair ATPase complement(339943..341529) Borrelia recurrentis A1 6918859 YP_002222785.1 CDS BRE_318 NC_011244.1 341556 342455 R probable inorganic polyphosphate/ATP-NAD kinase complement(341556..342455) Borrelia recurrentis A1 6918860 YP_002222786.1 CDS cheW-1 NC_011244.1 342388 342915 R purine-binding chemotaxis protein complement(342388..342915) Borrelia recurrentis A1 6918861 YP_002222787.1 CDS ftsJ NC_011244.1 342956 343537 R ribosomal RNA methyltransferase complement(342956..343537) Borrelia recurrentis A1 6918862 YP_002222788.1 CDS ispB NC_011244.1 343590 344636 D octaprenyl-diphosphate synthase 343590..344636 Borrelia recurrentis A1 6918863 YP_002222789.1 CDS BRE_322 NC_011244.1 344633 345301 D hypothetical protein 344633..345301 Borrelia recurrentis A1 6918864 YP_002222790.1 CDS BRE_323 NC_011244.1 345298 346104 R hypothetical protein complement(345298..346104) Borrelia recurrentis A1 6918865 YP_002222791.1 CDS BRE_324 NC_011244.1 346105 347037 R amidation motif (Prosite); hypothetical protein complement(346105..347037) Borrelia recurrentis A1 6918866 YP_002222792.1 CDS mglA-1 NC_011244.1 347034 348491 R methylgalactoside ABC transporter, ATP-binding protein complement(347034..348491) Borrelia recurrentis A1 6918867 YP_002222793.1 CDS tpn38b NC_011244.1 348495 349568 R LEUCINE_ZIPPER motif (Prosite); exported protein complement(348495..349568) Borrelia recurrentis A1 6918868 YP_002222794.1 CDS BRE_327 NC_011244.1 349968 351059 R hypothetical protein complement(349968..351059) Borrelia recurrentis A1 6918869 YP_002222795.1 CDS BRE_328 NC_011244.1 351560 352681 D Probable lipoprotein (SpLip); putative lipoprotein 351560..352681 Borrelia recurrentis A1 6918870 YP_002222796.1 CDS BRE_329 NC_011244.1 352775 353137 D Probable lipoprotein (SpLip); putative lipoprotein 352775..353137 Borrelia recurrentis A1 6918871 YP_002222797.1 CDS BRE_330 NC_011244.1 353171 354286 R hypothetical protein complement(353171..354286) Borrelia recurrentis A1 6918872 YP_002222798.1 CDS BRE_331 NC_011244.1 354350 357205 R hypothetical protein complement(354350..357205) Borrelia recurrentis A1 6918873 YP_002222799.1 CDS BRE_332 NC_011244.1 357220 358113 R glycerol-3-phosphate O-acyltransferase complement(357220..358113) Borrelia recurrentis A1 6918874 YP_002222800.1 CDS oppA-2 NC_011244.1 360242 361915 D oligopeptide ABC transporter, periplasmic oligopeptide-binding protein 360242..361915 Borrelia recurrentis A1 6918876 YP_002222801.1 CDS oppB-1 NC_011244.1 362280 363200 D Possible lipoprotein (SpLip); oligopeptide ABC transporter, permease protein 362280..363200 Borrelia recurrentis A1 6918877 YP_002222802.1 CDS oppC-1 NC_011244.1 363184 364269 D oligopeptide transport system permease protein 363184..364269 Borrelia recurrentis A1 6918878 YP_002222803.1 CDS oppD NC_011244.1 364280 365152 D oligopeptide transport system ATP-binding protein 364280..365152 Borrelia recurrentis A1 6918879 YP_002222804.1 CDS oppF NC_011244.1 365153 366136 D oligopeptide transport system ATP-binding protein 365153..366136 Borrelia recurrentis A1 6918880 YP_002222805.1 CDS BRE_339 NC_011244.1 366262 367068 R P26 complement(366262..367068) Borrelia recurrentis A1 6918881 YP_002222806.1 CDS eno NC_011244.1 367146 368444 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 367146..368444 Borrelia recurrentis A1 6918882 YP_002222807.1 CDS rpsI NC_011244.1 368515 368925 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(368515..368925) Borrelia recurrentis A1 6918883 YP_002222808.1 CDS rplM NC_011244.1 368936 369385 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(368936..369385) Borrelia recurrentis A1 6918884 YP_002222809.1 CDS BRE_343 NC_011244.1 369465 370250 R hypothetical protein complement(369465..370250) Borrelia recurrentis A1 6918885 YP_002222810.1 CDS gatB NC_011244.1 370243 371700 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(370243..371700) Borrelia recurrentis A1 6918886 YP_002222811.1 CDS gatA NC_011244.1 371690 373135 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(371690..373135) Borrelia recurrentis A1 6918887 YP_002222812.1 CDS gatC NC_011244.1 373147 373422 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(373147..373422) Borrelia recurrentis A1 6918888 YP_002222813.1 CDS uvrD NC_011244.1 373432 375528 R DNA helicase complement(373432..375528) Borrelia recurrentis A1 6918889 YP_002222814.1 CDS BRE_348 NC_011244.1 375525 376727 R AMIDATION; hypothetical protein complement(375525..376727) Borrelia recurrentis A1 6918890 YP_002222815.1 CDS BRE_349 NC_011244.1 376739 377416 R hypothetical protein complement(376739..377416) Borrelia recurrentis A1 6918891 YP_002222816.1 CDS BRE_350 NC_011244.1 377556 378965 D fibronectin/fibrinogen-binding protein, putative 377556..378965 Borrelia recurrentis A1 6918892 YP_002222817.1 CDS pyk NC_011244.1 379079 380512 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 379079..380512 Borrelia recurrentis A1 6918893 YP_002222818.1 CDS rpmB NC_011244.1 381286 381564 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(381286..381564) Borrelia recurrentis A1 6918894 YP_002222819.1 CDS BRE_353 NC_011244.1 381574 383172 R hypothetical protein complement(381574..383172) Borrelia recurrentis A1 6918895 YP_002222820.1 CDS BRE_354 NC_011244.1 383256 384371 D Probable lipoprotein (SpLip); putative lipoprotein 383256..384371 Borrelia recurrentis A1 6918896 YP_002222821.1 CDS BRE_355 NC_011244.1 384366 386180 R hypothetical protein complement(384366..386180) Borrelia recurrentis A1 6918897 YP_002222822.1 CDS BRE_356 NC_011244.1 386186 387130 R hypothetical protein complement(386186..387130) Borrelia recurrentis A1 6918898 YP_002222823.1 CDS BRE_357 NC_011244.1 387157 387651 R transcription factor, putative complement(387157..387651) Borrelia recurrentis A1 6918899 YP_002222824.1 CDS BRE_358 NC_011244.1 387696 388289 R hypothetical protein complement(387696..388289) Borrelia recurrentis A1 6918900 YP_002222825.1 CDS BRE_359 NC_011244.1 388282 389010 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(388282..389010) Borrelia recurrentis A1 6918901 YP_002222826.1 CDS ctp NC_011244.1 389014 390498 R carboxyl-terminal protease complement(389014..390498) Borrelia recurrentis A1 6918902 YP_002222827.1 CDS BRE_361 NC_011244.1 390541 390972 D hypothetical protein 390541..390972 Borrelia recurrentis A1 6918903 YP_002222828.1 CDS ylxH-2 NC_011244.1 390976 392109 D ATP-binding protein 390976..392109 Borrelia recurrentis A1 6918904 YP_002222829.1 CDS lgt NC_011244.1 392120 393073 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 392120..393073 Borrelia recurrentis A1 6918905 YP_002222830.1 CDS BRE_364 NC_011244.1 393131 395128 D periplasmic protein 393131..395128 Borrelia recurrentis A1 6918906 YP_002222831.1 CDS yscI NC_011244.1 395261 396634 D catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 1 395261..396634 Borrelia recurrentis A1 6918907 YP_002222832.1 CDS BRE_366 NC_011244.1 396585 396902 D hypothetical protein 396585..396902 Borrelia recurrentis A1 6918908 YP_002222833.1 CDS gpsA NC_011244.1 396923 397975 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(396923..397975) Borrelia recurrentis A1 6918909 YP_002222834.1 CDS tyrS NC_011244.1 400301 401521 R tyrosyl-tRNA synthetase complement(400301..401521) Borrelia recurrentis A1 6918911 YP_002222835.1 CDS glyS NC_011244.1 401526 402863 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(401526..402863) Borrelia recurrentis A1 6918912 YP_002222836.1 CDS gltX NC_011244.1 402878 404398 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(402878..404398) Borrelia recurrentis A1 6918913 YP_002222837.1 CDS BRE_372 NC_011244.1 404367 405149 R hypothetical protein complement(404367..405149) Borrelia recurrentis A1 6918914 YP_002222838.1 CDS BRE_373 NC_011244.1 405281 406426 D hypothetical protein 405281..406426 Borrelia recurrentis A1 6918915 YP_002222839.1 CDS pfs-1 NC_011244.1 406440 407153 D 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine 406440..407153 Borrelia recurrentis A1 6918916 YP_002222840.1 CDS metK NC_011244.1 407170 408339 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 407170..408339 Borrelia recurrentis A1 6918917 YP_002222841.1 CDS BRE_376 NC_011244.1 408252 408809 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 408252..408809 Borrelia recurrentis A1 6918918 YP_002222842.1 CDS pkcI NC_011244.1 408938 409369 R protein kinase C1 inhibitor complement(408938..409369) Borrelia recurrentis A1 6918919 YP_002222843.1 CDS mgtE NC_011244.1 409405 410766 R Mg2 transport protein complement(409405..410766) Borrelia recurrentis A1 6918920 YP_002222844.1 CDS BRE_379 NC_011244.1 410821 412245 R hypothetical protein complement(410821..412245) Borrelia recurrentis A1 6918921 YP_002222845.1 CDS bmpA-1 NC_011244.1 412519 413538 R basic membrane protein A complement(412519..413538) Borrelia recurrentis A1 6918922 YP_002222846.1 CDS bmpC NC_011244.1 413594 414664 R Probable lipoprotein (SpLip); basic membrane protein C; lipoprotein complement(413594..414664) Borrelia recurrentis A1 6918923 YP_002222847.1 CDS bmpA-2 NC_011244.1 414823 415851 R Probable lipoprotein (SpLip); basic membrane protein A; lipoprotein complement(414823..415851) Borrelia recurrentis A1 6918924 YP_002222848.1 CDS bmpD NC_011244.1 415875 416921 R basic membrane protein D complement(415875..416921) Borrelia recurrentis A1 6918925 YP_002222849.1 CDS rpsG NC_011244.1 416985 417458 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(416985..417458) Borrelia recurrentis A1 6918926 YP_002222850.1 CDS rpsL NC_011244.1 417473 417847 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(417473..417847) Borrelia recurrentis A1 6918927 YP_002222851.1 CDS rpoC NC_011244.1 417910 422043 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(417910..422043) Borrelia recurrentis A1 6918928 YP_002222852.1 CDS rpoB NC_011244.1 422058 425525 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(422058..425525) Borrelia recurrentis A1 6918929 YP_002222853.1 CDS rplL NC_011244.1 425611 425982 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(425611..425982) Borrelia recurrentis A1 6918930 YP_002222854.1 CDS rplJ NC_011244.1 426056 426544 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(426056..426544) Borrelia recurrentis A1 6918931 YP_002222855.1 CDS rplA NC_011244.1 426555 427229 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(426555..427229) Borrelia recurrentis A1 6918932 YP_002222856.1 CDS rplK NC_011244.1 427229 427663 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(427229..427663) Borrelia recurrentis A1 6918933 YP_002222857.1 CDS nusG NC_011244.1 427719 428273 R transcription antitermination factor complement(427719..428273) Borrelia recurrentis A1 6918934 YP_002222858.1 CDS secE NC_011244.1 428284 428454 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(428284..428454) Borrelia recurrentis A1 6918935 YP_002222859.1 CDS rpmG NC_011244.1 428567 428746 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(428567..428746) Borrelia recurrentis A1 6918937 YP_002222860.1 CDS BRE_397 NC_011244.1 428944 429795 R hypothetical protein complement(428944..429795) Borrelia recurrentis A1 6918939 YP_002222861.1 CDS BRE_398 NC_011244.1 429806 430870 R Probable lipoprotein (SpLip); hypothetical protein complement(429806..430870) Borrelia recurrentis A1 6918940 YP_002222862.1 CDS BRE_399 NC_011244.1 430853 432208 D Probable lipoprotein (SpLip); putative lipoprotein 430853..432208 Borrelia recurrentis A1 6918941 YP_002222863.1 CDS BRE_400 NC_011244.1 432221 432877 D hypothetical protein 432221..432877 Borrelia recurrentis A1 6918942 YP_002222864.1 CDS BRE_401 NC_011244.1 433027 434217 D glutamate transporter, putative 433027..434217 Borrelia recurrentis A1 6918943 YP_002222865.1 CDS proS NC_011244.1 434244 435719 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(434244..435719) Borrelia recurrentis A1 6918944 YP_002222866.1 CDS BRE_403 NC_011244.1 436493 437116 D hypothetical protein 436493..437116 Borrelia recurrentis A1 6918945 YP_002222867.1 CDS BRE_404 NC_011244.1 437140 437964 D hypothetical protein 437140..437964 Borrelia recurrentis A1 6918946 YP_002222868.1 CDS manA NC_011244.1 438015 439136 R mannose-6-phosphate isomerase complement(438015..439136) Borrelia recurrentis A1 6918947 YP_002222869.1 CDS fruA-1 NC_011244.1 439249 441000 R PTS system, fructose-specific IIABC component complement(439249..441000) Borrelia recurrentis A1 6918948 YP_002222870.1 CDS BRE_407 NC_011244.1 441125 441805 D hypothetical protein 441125..441805 Borrelia recurrentis A1 6918949 YP_002222871.1 CDS nucA NC_011244.1 441802 442686 D endonuclease precursor 441802..442686 Borrelia recurrentis A1 6918950 YP_002222872.1 CDS BRE_409 NC_011244.1 442683 443447 D hypothetical protein 442683..443447 Borrelia recurrentis A1 6918951 YP_002222873.1 CDS BRE_410 NC_011244.1 443467 444063 R hypothetical protein complement(443467..444063) Borrelia recurrentis A1 6918952 YP_002222874.1 CDS BRE_411 NC_011244.1 444063 445082 R Probable lipoprotein (SpLip); peptidyl-prolyl cis-trans isomerase complement(444063..445082) Borrelia recurrentis A1 6918953 YP_002222875.1 CDS cheR-2 NC_011244.1 445230 446093 D chemotaxis protein methyltransferase 445230..446093 Borrelia recurrentis A1 6918954 YP_002222876.1 CDS cheB-1 NC_011244.1 446129 447289 D protein-glutamate methylesterase 446129..447289 Borrelia recurrentis A1 6918955 YP_002222877.1 CDS traB NC_011244.1 447313 448521 D pheromone shutdown protein 447313..448521 Borrelia recurrentis A1 6918956 YP_002222878.1 CDS adk NC_011244.1 448561 449208 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 448561..449208 Borrelia recurrentis A1 6918957 YP_002222879.1 CDS BRE_416 NC_011244.1 449303 450379 D hypothetical protein 449303..450379 Borrelia recurrentis A1 6918958 YP_002222880.1 CDS rrp-1 NC_011244.1 450395 451327 R response regulatory protein complement(450395..451327) Borrelia recurrentis A1 6918959 YP_002222881.1 CDS BRE_418 NC_011244.1 451324 455769 R sensory transduction histidine kinase complement(451324..455769) Borrelia recurrentis A1 6918960 YP_002222882.1 CDS BRE_421 NC_011244.1 459041 459928 R hydrolase complement(459041..459928) Borrelia recurrentis A1 6918963 YP_002222883.1 CDS hpt NC_011244.1 460014 460538 D hypoxanthine phosphoribosyltransferase 460014..460538 Borrelia recurrentis A1 6918964 YP_002222884.1 CDS purA NC_011244.1 460548 461831 D adenylosuccinate synthase 460548..461831 Borrelia recurrentis A1 6918965 YP_002222885.1 CDS purB NC_011244.1 461816 463210 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 461816..463210 Borrelia recurrentis A1 6918966 YP_002222886.1 CDS mag NC_011244.1 463216 463806 R 3-methyladenine DNA glycosylase complement(463216..463806) Borrelia recurrentis A1 6918967 YP_002222887.1 CDS BRE_429 NC_011244.1 466526 467200 R RGD and UPF0011 motifs (Prosite); hypothetical protein complement(466526..467200) Borrelia recurrentis A1 6918971 YP_002222888.1 CDS BRE_430 NC_011244.1 467457 467774 D hypothetical protein 467457..467774 Borrelia recurrentis A1 6918972 YP_002222889.1 CDS BRE_431 NC_011244.1 467781 468170 R hypothetical protein complement(467781..468170) Borrelia recurrentis A1 6918973 YP_002222890.1 CDS pepQ NC_011244.1 468284 468862 D proline dipeptidase (PepQ) 468284..468862 Borrelia recurrentis A1 6918974 YP_002222891.1 CDS spo0J NC_011244.1 469469 470251 R stage 0 sporulation protein J complement(469469..470251) Borrelia recurrentis A1 6918976 YP_002222892.1 CDS gyrA NC_011244.1 470388 472835 R DNA gyrase, subunit A complement(470388..472835) Borrelia recurrentis A1 6918977 YP_002222893.1 CDS gyrB NC_011244.1 472832 474751 R DNA gyrase, subunit B complement(472832..474751) Borrelia recurrentis A1 6918978 YP_002222894.1 CDS dnaA NC_011244.1 474985 476439 D chromosomal replication initiator protein 474985..476439 Borrelia recurrentis A1 6918979 YP_002222895.1 CDS dnaN NC_011244.1 476703 477863 D DNA polymerase III, subunit beta 476703..477863 Borrelia recurrentis A1 6918980 YP_002222896.1 CDS recF NC_011244.1 477884 478951 D DNA replication and repair protein RecF 477884..478951 Borrelia recurrentis A1 6918981 YP_002222897.1 CDS BRE_440 NC_011244.1 478932 479231 D hypothetical protein 478932..479231 Borrelia recurrentis A1 6918982 YP_002222898.1 CDS rpmH NC_011244.1 479326 479481 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 479326..479481 Borrelia recurrentis A1 6918983 YP_002222899.1 CDS rnpA NC_011244.1 479462 479806 D ribonuclease P protein component 479462..479806 Borrelia recurrentis A1 6918984 YP_002222900.1 CDS BRE_443 NC_011244.1 479803 481440 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 479803..481440 Borrelia recurrentis A1 6918985 YP_002222901.1 CDS jag NC_011244.1 481437 482159 D spoIIIJ-associated protein 481437..482159 Borrelia recurrentis A1 6918986 YP_002222902.1 CDS BRE_445 NC_011244.1 482216 483274 D nucleotide sugar epimerase 482216..483274 Borrelia recurrentis A1 6918987 YP_002222903.1 CDS fba NC_011244.1 483413 484492 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 483413..484492 Borrelia recurrentis A1 6918988 YP_002222904.1 CDS BRE_447 NC_011244.1 484724 485155 D heat shock protein, HSP20 family 484724..485155 Borrelia recurrentis A1 6918989 YP_002222905.1 CDS aspS NC_011244.1 485200 486951 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(485200..486951) Borrelia recurrentis A1 6918990 YP_002222906.1 CDS napA_1 NC_011244.1 486955 489075 R Na+ /H+ antiporter complement(486955..489075) Borrelia recurrentis A1 6918991 YP_002222907.1 CDS ptsH-1 NC_011244.1 489072 489350 R phosphocarrier protein HPr complement(489072..489350) Borrelia recurrentis A1 6918992 YP_002222908.1 CDS BRE_451 NC_011244.1 489365 489676 R hypothetical protein complement(489365..489676) Borrelia recurrentis A1 6918993 YP_002222909.1 CDS ntrA NC_011244.1 489651 490907 R RNA polymerase sigma-54 factor complement(489651..490907) Borrelia recurrentis A1 6918994 YP_002222910.1 CDS BRE_453 NC_011244.1 490910 491443 R chromate transport protein, putative complement(490910..491443) Borrelia recurrentis A1 6918995 YP_002222911.1 CDS BRE_454 NC_011244.1 491409 492023 R AMIDATION and MICROBODIES_CTER motifs (Prosite); Chromate transport protein, putative complement(491409..492023) Borrelia recurrentis A1 6918996 YP_002222912.1 CDS BRE_455 NC_011244.1 492147 493088 D hypothetical protein 492147..493088 Borrelia recurrentis A1 6918997 YP_002222913.1 CDS BRE_456 NC_011244.1 493072 494238 R AMIDATION motif (Prosite); lipopolysaccharide biosynthesis-related protein complement(493072..494238) Borrelia recurrentis A1 6918998 YP_002222914.1 CDS BRE_457 NC_011244.1 494306 495289 D DNA polymerase III delta subunit 494306..495289 Borrelia recurrentis A1 6918999 YP_002222915.1 CDS uvrC NC_011244.1 495293 497101 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(495293..497101) Borrelia recurrentis A1 6919000 YP_002222916.1 CDS BRE_459 NC_011244.1 497212 498729 D hypothetical protein 497212..498729 Borrelia recurrentis A1 6919001 YP_002222917.1 CDS BRE_460 NC_011244.1 498665 500029 D hypothetical protein 498665..500029 Borrelia recurrentis A1 6919002 YP_002222918.1 CDS BRE_463 NC_011244.1 500352 501083 R Probable lipoprotein (SpLip); putative lipoprotein complement(500352..501083) Borrelia recurrentis A1 6919005 YP_002222919.1 CDS dnaX NC_011244.1 501628 503295 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 501628..503295 Borrelia recurrentis A1 6919008 YP_002222920.1 CDS BRE_467 NC_011244.1 503298 503597 D hypothetical protein 503298..503597 Borrelia recurrentis A1 6919009 YP_002222921.1 CDS recR NC_011244.1 503601 504185 D recombination protein RecR 503601..504185 Borrelia recurrentis A1 6919010 YP_002222922.1 CDS ndk NC_011244.1 504437 505018 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 504437..505018 Borrelia recurrentis A1 6919011 YP_002222923.1 CDS BRE_470 NC_011244.1 505022 505846 D putative adenine-specific DNA methyltransferase 505022..505846 Borrelia recurrentis A1 6919012 YP_002222924.1 CDS BRE_471 NC_011244.1 506060 506596 D hypothetical protein 506060..506596 Borrelia recurrentis A1 6919013 YP_002222925.1 CDS BRE_472 NC_011244.1 506593 507288 D hypothetical protein 506593..507288 Borrelia recurrentis A1 6919014 YP_002222926.1 CDS BRE_473 NC_011244.1 507224 508057 D ABC transporter, ATP-binding protein 507224..508057 Borrelia recurrentis A1 6919015 YP_002222927.1 CDS BRE_474 NC_011244.1 508054 508743 D amidation and RGD motifs (Prosite); hypothetical protein 508054..508743 Borrelia recurrentis A1 6919016 YP_002222928.1 CDS BRE_475 NC_011244.1 508745 509491 D hypothetical protein 508745..509491 Borrelia recurrentis A1 6919017 YP_002222929.1 CDS lspA NC_011244.1 509501 510013 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; signal peptidase II 509501..510013 Borrelia recurrentis A1 6919018 YP_002222930.1 CDS BRE_477 NC_011244.1 510010 510234 D hypothetical protein 510010..510234 Borrelia recurrentis A1 6919019 YP_002222931.1 CDS BRE_478 NC_011244.1 510249 511067 D amidation motif (Prosite); hypothetical protein 510249..511067 Borrelia recurrentis A1 6919020 YP_002222932.1 CDS murA NC_011244.1 511126 512406 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 511126..512406 Borrelia recurrentis A1 6919021 YP_002222933.1 CDS BRE_480 NC_011244.1 512643 514001 D hypothetical protein 512643..514001 Borrelia recurrentis A1 6919022 YP_002222934.1 CDS BRE_481 NC_011244.1 514148 514471 R Probable lipoprotein (SpLip); hypothetical protein complement(514148..514471) Borrelia recurrentis A1 6919023 YP_002222935.1 CDS tuf NC_011244.1 514819 516003 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 514819..516003 Borrelia recurrentis A1 6919024 YP_002222936.1 CDS rpsJ NC_011244.1 516049 516360 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 516049..516360 Borrelia recurrentis A1 6919025 YP_002222937.1 CDS rplC NC_011244.1 516394 517023 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 516394..517023 Borrelia recurrentis A1 6919026 YP_002222938.1 CDS rplD NC_011244.1 517025 517654 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 517025..517654 Borrelia recurrentis A1 6919027 YP_002222939.1 CDS rplW NC_011244.1 517676 517972 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 517676..517972 Borrelia recurrentis A1 6919028 YP_002222940.1 CDS rplB NC_011244.1 517991 518824 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 517991..518824 Borrelia recurrentis A1 6919029 YP_002222941.1 CDS rpsS NC_011244.1 518834 519112 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 518834..519112 Borrelia recurrentis A1 6919030 YP_002222942.1 CDS rplV NC_011244.1 519119 519481 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 519119..519481 Borrelia recurrentis A1 6919031 YP_002222943.1 CDS rpsC NC_011244.1 519485 520315 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 519485..520315 Borrelia recurrentis A1 6919032 YP_002222944.1 CDS rplP NC_011244.1 520334 520750 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 520334..520750 Borrelia recurrentis A1 6919033 YP_002222945.1 CDS rpmC NC_011244.1 520754 520954 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 520754..520954 Borrelia recurrentis A1 6919034 YP_002222946.1 CDS rpsQ NC_011244.1 520960 521214 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 520960..521214 Borrelia recurrentis A1 6919035 YP_002222947.1 CDS rplN NC_011244.1 521262 521630 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 521262..521630 Borrelia recurrentis A1 6919036 YP_002222948.1 CDS rplX NC_011244.1 521641 521946 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 521641..521946 Borrelia recurrentis A1 6919037 YP_002222949.1 CDS rplE NC_011244.1 521950 522498 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 521950..522498 Borrelia recurrentis A1 6919038 YP_002222950.1 CDS rpsN NC_011244.1 522513 522698 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 522513..522698 Borrelia recurrentis A1 6919039 YP_002222951.1 CDS rpsH NC_011244.1 522708 523106 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 522708..523106 Borrelia recurrentis A1 6919040 YP_002222952.1 CDS rplF NC_011244.1 523126 523668 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 523126..523668 Borrelia recurrentis A1 6919041 YP_002222953.1 CDS rplR NC_011244.1 523686 524045 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 523686..524045 Borrelia recurrentis A1 6919042 YP_002222954.1 CDS rpsE NC_011244.1 524057 524551 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 524057..524551 Borrelia recurrentis A1 6919043 YP_002222955.1 CDS rpmD NC_011244.1 524555 524866 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 524555..524866 Borrelia recurrentis A1 6919044 YP_002222956.1 CDS rplO NC_011244.1 524859 525296 D late assembly protein; 50S ribosomal protein L15 524859..525296 Borrelia recurrentis A1 6919045 YP_002222957.1 CDS secY NC_011244.1 525309 526613 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 525309..526613 Borrelia recurrentis A1 6919046 YP_002222958.1 CDS rpmJ NC_011244.1 526623 526736 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 526623..526736 Borrelia recurrentis A1 6919047 YP_002222959.1 CDS rpsM NC_011244.1 526746 527123 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 526746..527123 Borrelia recurrentis A1 6919048 YP_002222960.1 CDS rpsK NC_011244.1 527154 527543 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 527154..527543 Borrelia recurrentis A1 6919049 YP_002222961.1 CDS rpoA NC_011244.1 527559 528590 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 527559..528590 Borrelia recurrentis A1 6919050 YP_002222962.1 CDS rplQ NC_011244.1 528609 528980 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 528609..528980 Borrelia recurrentis A1 6919051 YP_002222963.1 CDS BRE_510 NC_011244.1 529055 530596 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 529055..530596 Borrelia recurrentis A1 6919052 YP_002222964.1 CDS BRE_511 NC_011244.1 530565 531377 D hypothetical protein 530565..531377 Borrelia recurrentis A1 6919053 YP_002222965.1 CDS tlyA NC_011244.1 531358 532149 D hemolysin 531358..532149 Borrelia recurrentis A1 6919054 YP_002222966.1 CDS BRE_513 NC_011244.1 532146 532925 R LEUCINE_ZIPPER and MICROBODIES_CTER motifs (Prosite); hypothetical protein complement(532146..532925) Borrelia recurrentis A1 6919055 YP_002222967.1 CDS engA NC_011244.1 532981 534303 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 532981..534303 Borrelia recurrentis A1 6919056 YP_002222968.1 CDS BRE_515 NC_011244.1 534300 535553 D hypothetical protein 534300..535553 Borrelia recurrentis A1 6919057 YP_002222969.1 CDS BRE_516 NC_011244.1 535559 536245 D putative hydrolase 535559..536245 Borrelia recurrentis A1 6919058 YP_002222970.1 CDS BRE_517 NC_011244.1 536264 543250 D RGD and LEUCINE_ZIPPER motifs (Prosite); p-512 protein 536264..543250 Borrelia recurrentis A1 6919059 YP_002222971.1 CDS pheS NC_011244.1 543261 544808 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit alpha 543261..544808 Borrelia recurrentis A1 6919060 YP_002222972.1 CDS pheT NC_011244.1 544801 546495 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit beta 544801..546495 Borrelia recurrentis A1 6919061 YP_002222973.1 CDS trxB NC_011244.1 546584 547561 D thioredoxin reductase 546584..547561 Borrelia recurrentis A1 6919062 YP_002222974.1 CDS yacO NC_011244.1 547590 548324 R rRNA methylase complement(547590..548324) Borrelia recurrentis A1 6919063 YP_002222975.1 CDS dnaJ-1 NC_011244.1 548326 549426 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(548326..549426) Borrelia recurrentis A1 6919064 YP_002222976.1 CDS dnaK NC_011244.1 549426 551324 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(549426..551324) Borrelia recurrentis A1 6919065 YP_002222977.1 CDS grpE NC_011244.1 551368 551916 R chaperone protein GrpE complement(551368..551916) Borrelia recurrentis A1 6919066 YP_002222978.1 CDS BRE_525 NC_011244.1 552280 553848 D NH(3)-dependent NAD synthetase 552280..553848 Borrelia recurrentis A1 6919067 YP_002222979.1 CDS BRE_526 NC_011244.1 553835 555424 D Response regulator receiver (CheY) modulated Serine phosphatase 553835..555424 Borrelia recurrentis A1 6919068 YP_002222980.1 CDS BRE_527 NC_011244.1 555576 556031 R hypothetical protein complement(555576..556031) Borrelia recurrentis A1 6919069 YP_002222981.1 CDS BRE_528 NC_011244.1 556139 557947 D 2 LEUCINE_ZIPPER motifs (Prosite); hypothetical protein 556139..557947 Borrelia recurrentis A1 6919070 YP_002222982.1 CDS BRE_529 NC_011244.1 557937 558731 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 557937..558731 Borrelia recurrentis A1 6919071 YP_002222983.1 CDS BRE_530 NC_011244.1 558709 559539 R LEUCINE_ZIPPER motif (Prosite); hypothetical protein complement(558709..559539) Borrelia recurrentis A1 6919072 YP_002222984.1 CDS BRE_531 NC_011244.1 559520 560131 R hypothetical protein complement(559520..560131) Borrelia recurrentis A1 6919073 YP_002222985.1 CDS BRE_532 NC_011244.1 560134 561423 R hypothetical protein complement(560134..561423) Borrelia recurrentis A1 6919074 YP_002222986.1 CDS phnP NC_011244.1 561584 562342 D phnP protein 561584..562342 Borrelia recurrentis A1 6919075 YP_002222987.1 CDS exoA NC_011244.1 562354 563118 D exodeoxyribonuclease III 562354..563118 Borrelia recurrentis A1 6919076 YP_002222988.1 CDS BRE_535 NC_011244.1 563142 563903 D amidation motif (Prosite); hypothetical protein 563142..563903 Borrelia recurrentis A1 6919077 YP_002222989.1 CDS BRE_536 NC_011244.1 563900 566725 D Probable lipoprotein (SpLip); zinc protease, putative; lipoprotein 563900..566725 Borrelia recurrentis A1 6919078 YP_002222990.1 CDS BRE_537 NC_011244.1 566748 568184 R ZINC_PROTEASE motif (Prosite); hypothetical protein complement(566748..568184) Borrelia recurrentis A1 6919079 YP_002222991.1 CDS BRE_541 NC_011244.1 568609 569256 R TPR domain protein complement(568609..569256) Borrelia recurrentis A1 6919083 YP_002222992.1 CDS BRE_542 NC_011244.1 569253 569603 R hypothetical protein complement(569253..569603) Borrelia recurrentis A1 6919084 YP_002222993.1 CDS BRE_543 NC_011244.1 569692 570387 R hypothetical protein complement(569692..570387) Borrelia recurrentis A1 6919085 YP_002222994.1 CDS fus-1 NC_011244.1 570400 572481 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(570400..572481) Borrelia recurrentis A1 6919086 YP_002222995.1 CDS BRE_545 NC_011244.1 573018 573260 D hypothetical protein 573018..573260 Borrelia recurrentis A1 6919087 YP_002222996.1 CDS BRE_546 NC_011244.1 573463 574548 D LEUCINE_ZIPPER and AMIDATION motifs (Prosite); hypothetical protein 573463..574548 Borrelia recurrentis A1 6919088 YP_002222997.1 CDS BRE_547 NC_011244.1 574652 575203 D Probable lipoprotein (SpLip); hypothetical protein 574652..575203 Borrelia recurrentis A1 6919089 YP_002222998.1 CDS BRE_548 NC_011244.1 575258 575926 D hypothetical protein 575258..575926 Borrelia recurrentis A1 6919090 YP_002222999.1 CDS prs NC_011244.1 576084 577304 D Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 576084..577304 Borrelia recurrentis A1 6919091 YP_002223000.1 CDS xylB NC_011244.1 577309 578673 D xylulokinase 577309..578673 Borrelia recurrentis A1 6919092 YP_002223001.1 CDS BRE_551 NC_011244.1 578656 579360 R hypothetical protein complement(578656..579360) Borrelia recurrentis A1 6919093 YP_002223002.1 CDS coaE NC_011244.1 579360 579956 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(579360..579956) Borrelia recurrentis A1 6919094 YP_002223003.1 CDS polA NC_011244.1 579935 582703 R DNA polymerase I complement(579935..582703) Borrelia recurrentis A1 6919095 YP_002223004.1 CDS BRE_554 NC_011244.1 582700 583104 R hypothetical protein complement(582700..583104) Borrelia recurrentis A1 6919096 YP_002223005.1 CDS flaJ NC_011244.1 583094 583516 R flagellar protein complement(583094..583516) Borrelia recurrentis A1 6919097 YP_002223006.1 CDS cheY-1 NC_011244.1 583527 583937 R chemotaxis response regulator complement(583527..583937) Borrelia recurrentis A1 6919098 YP_002223007.1 CDS ligA NC_011244.1 584100 586109 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 584100..586109 Borrelia recurrentis A1 6919099 YP_002223008.1 CDS BRE_558 NC_011244.1 586112 588400 R hypothetical protein complement(586112..588400) Borrelia recurrentis A1 6919100 YP_002223009.1 CDS BRE_559 NC_011244.1 588685 590553 D amidation motif (Prosite); hypothetical protein 588685..590553 Borrelia recurrentis A1 6919101 YP_002223010.1 CDS BRE_560 NC_011244.1 590540 591001 D hypothetical protein 590540..591001 Borrelia recurrentis A1 6919102 YP_002223011.1 CDS BRE_561 NC_011244.1 590998 591858 D hypothetical protein 590998..591858 Borrelia recurrentis A1 6919103 YP_002223012.1 CDS ptsH-2 NC_011244.1 592018 592278 D phosphocarrier protein HPr 592018..592278 Borrelia recurrentis A1 6919104 YP_002223013.1 CDS ptsI NC_011244.1 592279 594015 D phosphoenolpyruvate-protein phosphatase 592279..594015 Borrelia recurrentis A1 6919105 YP_002223014.1 CDS crr NC_011244.1 594019 594588 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 594019..594588 Borrelia recurrentis A1 6919106 YP_002223015.1 CDS htpG NC_011244.1 594625 596472 R molecular chaperone; heat shock protein 90 complement(594625..596472) Borrelia recurrentis A1 6919107 YP_002223016.1 CDS gnd NC_011244.1 596587 597981 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 596587..597981 Borrelia recurrentis A1 6919108 YP_002223017.1 CDS BRE_567 NC_011244.1 597996 598532 R hypothetical protein complement(597996..598532) Borrelia recurrentis A1 6919109 YP_002223018.1 CDS BRE_568 NC_011244.1 598656 599174 R hypothetical protein complement(598656..599174) Borrelia recurrentis A1 6919110 YP_002223019.1 CDS BRE_569 NC_011244.1 599389 599898 R hypothetical protein complement(599389..599898) Borrelia recurrentis A1 6919111 YP_002223020.1 CDS cheW-2 NC_011244.1 600237 600770 D purine-binding chemotaxis protein 600237..600770 Borrelia recurrentis A1 6919112 YP_002223021.1 CDS BRE_571 NC_011244.1 600776 601096 D hypothetical protein 600776..601096 Borrelia recurrentis A1 6919113 YP_002223022.1 CDS cheA-1 NC_011244.1 601120 603261 D chemotaxis histidine kinase 601120..603261 Borrelia recurrentis A1 6919114 YP_002223023.1 CDS cheB-2 NC_011244.1 603323 604474 D protein-glutamate methylesterase 603323..604474 Borrelia recurrentis A1 6919115 YP_002223024.1 CDS BRE_574 NC_011244.1 604453 606246 D hypothetical protein 604453..606246 Borrelia recurrentis A1 6919116 YP_002223025.1 CDS cheY-2 NC_011244.1 606283 606657 D chemotaxis response regulator 606283..606657 Borrelia recurrentis A1 6919117 YP_002223026.1 CDS BRE_576 NC_011244.1 606700 608043 D putative peptidase , M20/M25/M40 family; hypothetical protein 606700..608043 Borrelia recurrentis A1 6919118 YP_002223027.1 CDS pyrH NC_011244.1 608142 608831 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(608142..608831) Borrelia recurrentis A1 6919120 YP_002223028.1 CDS lgtD NC_011244.1 609048 610112 D glycosyl transferase 609048..610112 Borrelia recurrentis A1 6919121 YP_002223029.1 CDS BRE_580 NC_011244.1 610174 610995 D ABC transporter, ATP-binding protein 610174..610995 Borrelia recurrentis A1 6919122 YP_002223030.1 CDS BRE_581 NC_011244.1 610988 611869 D LEUCINE_ZIPPER motif (Prosite); hypothetical protein 610988..611869 Borrelia recurrentis A1 6919123 YP_002223031.1 CDS pyrG NC_011244.1 612097 613752 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 612097..613752 Borrelia recurrentis A1 6919124 YP_002223032.1 CDS BRE_583 NC_011244.1 613815 614420 D hypothetical protein 613815..614420 Borrelia recurrentis A1 6919125 YP_002223033.1 CDS mcp-1 NC_011244.1 614529 615704 D methyl-accepting chemotaxis protein 614529..615704 Borrelia recurrentis A1 6919126 YP_002223034.1 CDS dnaE NC_011244.1 615828 619262 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 615828..619262 Borrelia recurrentis A1 6919127 YP_002223035.1 CDS BRE_586 NC_011244.1 619274 619846 D hypothetical protein 619274..619846 Borrelia recurrentis A1 6919128 YP_002223036.1 CDS recG NC_011244.1 619856 621919 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 619856..621919 Borrelia recurrentis A1 6919129 YP_002223037.1 CDS BRE_588 NC_011244.1 621906 622763 R carboxypeptidase, putative complement(621906..622763) Borrelia recurrentis A1 6919130 YP_002223038.1 CDS BRE_589 NC_011244.1 623204 624547 D hypothetical protein 623204..624547 Borrelia recurrentis A1 6919131 YP_002223039.1 CDS murD NC_011244.1 624572 625927 D UDP-N-acetylmuramoylalanine--D-glutamate ligase 624572..625927 Borrelia recurrentis A1 6919132 YP_002223040.1 CDS femA NC_011244.1 625924 626973 R FemA protein complement(625924..626973) Borrelia recurrentis A1 6919133 YP_002223041.1 CDS metG NC_011244.1 626995 629175 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(626995..629175) Borrelia recurrentis A1 6919134 YP_002223042.1 CDS pta NC_011244.1 629287 630357 D phosphate acetyltransferase 629287..630357 Borrelia recurrentis A1 6919135 YP_002223043.1 CDS ksgA NC_011244.1 630340 631164 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(630340..631164) Borrelia recurrentis A1 6919136 YP_002223044.1 CDS BRE_595 NC_011244.1 631199 632596 R competence locus E, putative complement(631199..632596) Borrelia recurrentis A1 6919137 YP_002223045.1 CDS BRE_596 NC_011244.1 632595 633320 D hypothetical protein 632595..633320 Borrelia recurrentis A1 6919138 YP_002223046.1 CDS BRE_597 NC_011244.1 633330 635261 D long-chain-fatty-acid CoA ligase 633330..635261 Borrelia recurrentis A1 6919139 YP_002223047.1 CDS argS NC_011244.1 635293 637050 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(635293..637050) Borrelia recurrentis A1 6919140 YP_002223048.1 CDS BRE_599 NC_011244.1 637043 637621 R hypothetical protein complement(637043..637621) Borrelia recurrentis A1 6919141 YP_002223049.1 CDS mcp-2 NC_011244.1 637637 639853 R methyl-accepting chemotaxis protein complement(637637..639853) Borrelia recurrentis A1 6919142 YP_002223050.1 CDS mcp-3 NC_011244.1 640009 642249 D methyl-accepting chemotaxis protein 640009..642249 Borrelia recurrentis A1 6919143 YP_002223051.1 CDS murB NC_011244.1 642251 643204 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(642251..643204) Borrelia recurrentis A1 6919144 YP_002223052.1 CDS cysS NC_011244.1 643358 644815 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 643358..644815 Borrelia recurrentis A1 6919145 YP_002223053.1 CDS BRE_604 NC_011244.1 644819 646372 D hypothetical protein 644819..646372 Borrelia recurrentis A1 6919146 YP_002223054.1 CDS glyA NC_011244.1 646362 647615 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 646362..647615 Borrelia recurrentis A1 6919147 YP_002223055.1 CDS dnaJ NC_011244.1 647630 648394 D chaperone protein DnaJ 647630..648394 Borrelia recurrentis A1 6919148 YP_002223056.1 CDS BRE_607 NC_011244.1 648492 650330 R membrane-associated protein P66 complement(648492..650330) Borrelia recurrentis A1 6919149 YP_002223057.1 CDS lctP NC_011244.1 650554 652089 R L-lactate permease complement(650554..652089) Borrelia recurrentis A1 6919150 YP_002223058.1 CDS dacA NC_011244.1 652059 653060 D serine-type D-Ala-D-Ala carboxypeptidase 652059..653060 Borrelia recurrentis A1 6919151 YP_002223059.1 CDS BRE_610 NC_011244.1 653314 653817 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 653314..653817 Borrelia recurrentis A1 6919152 YP_002223060.1 CDS pepD NC_011244.1 653996 655417 D aminoacyl-histidine dipeptidase 653996..655417 Borrelia recurrentis A1 6919153 YP_002223061.1 CDS tig NC_011244.1 655947 657293 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 655947..657293 Borrelia recurrentis A1 6919158 YP_002223062.1 CDS clpP NC_011244.1 657293 657892 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 657293..657892 Borrelia recurrentis A1 6919159 YP_002223063.1 CDS clpX NC_011244.1 657915 659204 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 657915..659204 Borrelia recurrentis A1 6919160 YP_002223064.1 CDS lon-2 NC_011244.1 659149 661587 D ATP-dependent protease LA 659149..661587 Borrelia recurrentis A1 6919161 YP_002223065.1 CDS rpsD NC_011244.1 661797 662423 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(661797..662423) Borrelia recurrentis A1 6919162 YP_002223066.1 CDS BRE_622 NC_011244.1 662571 663839 R 2 amidation motifs (Prosite); hypothetical protein complement(662571..663839) Borrelia recurrentis A1 6919164 YP_002223067.1 CDS BRE_623 NC_011244.1 663941 664324 D hypothetical protein 663941..664324 Borrelia recurrentis A1 6919165 YP_002223068.1 CDS cdd NC_011244.1 664360 664815 R cytidine deaminase complement(664360..664815) Borrelia recurrentis A1 6919166 YP_002223069.1 CDS BRE_625 NC_011244.1 664949 665908 D hypothetical protein 664949..665908 Borrelia recurrentis A1 6919167 YP_002223070.1 CDS BRE_626 NC_011244.1 665898 667553 R beta-glucosidase, putative complement(665898..667553) Borrelia recurrentis A1 6919168 YP_002223071.1 CDS thiJ NC_011244.1 667864 668409 D 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein 667864..668409 Borrelia recurrentis A1 6919170 YP_002223072.1 CDS ackA NC_011244.1 668503 669729 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(668503..669729) Borrelia recurrentis A1 6919171 YP_002223073.1 CDS mfd NC_011244.1 669740 673117 R transcription-repair coupling factor complement(669740..673117) Borrelia recurrentis A1 6919172 YP_002223074.1 CDS BRE_631 NC_011244.1 673216 674178 D hypothetical protein 673216..674178 Borrelia recurrentis A1 6919173 YP_002223075.1 CDS BRE_632 NC_011244.1 674114 676213 D N-acetylmuramoyl-L-alanine amidase, putative 674114..676213 Borrelia recurrentis A1 6919174 YP_002223076.1 CDS pepX NC_011244.1 676903 678171 R catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 complement(676903..678171) Borrelia recurrentis A1 6919176 YP_002223077.1 CDS BRE_635 NC_011244.1 678275 679000 D putative lipoprotein 678275..679000 Borrelia recurrentis A1 6919177 YP_002223078.1 CDS fruA-2 NC_011244.1 679044 680903 R PTS system, fructose-specific IIABC component complement(679044..680903) Borrelia recurrentis A1 6919178 YP_002223079.1 CDS fruK NC_011244.1 681058 681975 D 1-phosphofructokinase 681058..681975 Borrelia recurrentis A1 6919179 YP_002223080.1 CDS recD NC_011244.1 682168 683994 R exodeoxyribonuclease V, alpha chain complement(682168..683994) Borrelia recurrentis A1 6919181 YP_002223081.1 CDS recB NC_011244.1 684003 687446 R exodeoxyribonuclease V, beta chain complement(684003..687446) Borrelia recurrentis A1 6919182 YP_002223082.1 CDS recC NC_011244.1 687453 690665 R exodeoxyribonuclease V, gamma chain complement(687453..690665) Borrelia recurrentis A1 6919183 YP_002223083.1 CDS BRE_642 NC_011244.1 690670 692115 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(690670..692115) Borrelia recurrentis A1 6919184 YP_002223084.1 CDS zwf NC_011244.1 692286 693719 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 692286..693719 Borrelia recurrentis A1 6919185 YP_002223085.1 CDS nhaC-2 NC_011244.1 694644 695969 D Na+/H+ antiporter 694644..695969 Borrelia recurrentis A1 6919186 YP_002223086.1 CDS potD NC_011244.1 696001 697056 R Probable lipoprotein (SpLip); spermidine/putrescine ABC transporter, binding periplasmic protein complement(696001..697056) Borrelia recurrentis A1 6919187 YP_002223087.1 CDS potC NC_011244.1 697068 697859 R spermidine/putrescine ABC transporter, permease protein complement(697068..697859) Borrelia recurrentis A1 6919188 YP_002223088.1 CDS potB NC_011244.1 697869 698672 R spermidine/putrescine ABC transporter, permease protein complement(697869..698672) Borrelia recurrentis A1 6919189 YP_002223089.1 CDS potA NC_011244.1 698678 699721 R spermidine/putrescine ABC transporter, ATP-binding protein complement(698678..699721) Borrelia recurrentis A1 6919190 YP_002223090.1 CDS rbgA NC_011244.1 699808 700683 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(699808..700683) Borrelia recurrentis A1 6919191 YP_002223091.1 CDS BRE_650 NC_011244.1 700835 701500 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 700835..701500 Borrelia recurrentis A1 6919192 YP_002223092.1 CDS ptsG NC_011244.1 701540 703099 D PTS system, glucose-specific IIBC component 701540..703099 Borrelia recurrentis A1 6919193 YP_002223093.1 CDS BRE_652 NC_011244.1 703128 704114 R hypothetical protein complement(703128..704114) Borrelia recurrentis A1 6919194 YP_002223094.1 CDS fur NC_011244.1 704127 704645 R ferric uptake regulation protein complement(704127..704645) Borrelia recurrentis A1 6919195 YP_002223095.1 CDS BRE_654 NC_011244.1 704737 706431 R AMIDATION motif (Prosite); serine/threonine kinase, putative complement(704737..706431) Borrelia recurrentis A1 6919196 YP_002223096.1 CDS groEL NC_011244.1 706652 708286 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 706652..708286 Borrelia recurrentis A1 6919197 YP_002223097.1 CDS BRE_656 NC_011244.1 708347 708643 D hypothetical protein 708347..708643 Borrelia recurrentis A1 6919198 YP_002223098.1 CDS yajC NC_011244.1 708659 708982 D preprotein translocase YajC subunit 708659..708982 Borrelia recurrentis A1 6919199 YP_002223099.1 CDS secD NC_011244.1 709063 710826 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 709063..710826 Borrelia recurrentis A1 6919200 YP_002223100.1 CDS secF NC_011244.1 710810 711706 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 710810..711706 Borrelia recurrentis A1 6919201 YP_002223101.1 CDS BRE_660 NC_011244.1 711730 712881 D hypothetical protein 711730..712881 Borrelia recurrentis A1 6919202 YP_002223102.1 CDS dnaJ-2 NC_011244.1 712878 713726 R heat shock protein complement(712878..713726) Borrelia recurrentis A1 6919203 YP_002223103.1 CDS BRE_662 NC_011244.1 713847 714986 D HemN-related protein 713847..714986 Borrelia recurrentis A1 6919204 YP_002223104.1 CDS rpi NC_011244.1 714973 715659 R ribose 5-phosphate isomerase A complement(714973..715659) Borrelia recurrentis A1 6919205 YP_002223105.1 CDS gpmA NC_011244.1 715882 716634 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 715882..716634 Borrelia recurrentis A1 6919206 YP_002223106.1 CDS lysK NC_011244.1 716720 718318 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(716720..718318) Borrelia recurrentis A1 6919207 YP_002223107.1 CDS era NC_011244.1 718368 719240 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(718368..719240) Borrelia recurrentis A1 6919208 YP_002223108.1 CDS BRE_667 NC_011244.1 719337 719684 D hypothetical protein 719337..719684 Borrelia recurrentis A1 6919209 YP_002223109.1 CDS BRE_668 NC_011244.1 719697 720104 D hypothetical protein 719697..720104 Borrelia recurrentis A1 6919210 YP_002223110.1 CDS BRE_669 NC_011244.1 720101 720535 D Possible lipoprotein (SpLip); hypothetical protein 720101..720535 Borrelia recurrentis A1 6919211 YP_002223111.1 CDS BRE_670 NC_011244.1 720537 721196 R Probable lipoprotein (SpLip); hypothetical protein complement(720537..721196) Borrelia recurrentis A1 6919212 YP_002223112.1 CDS BRE_671 NC_011244.1 721242 722201 D hypothetical protein 721242..722201 Borrelia recurrentis A1 6919213 YP_002223113.1 CDS BRE_672 NC_011244.1 722164 723189 D N-acetylmuramoyl-L-alanine amidase 722164..723189 Borrelia recurrentis A1 6919214 YP_002223114.1 CDS BRE_673 NC_011244.1 723170 723718 D hypothetical protein 723170..723718 Borrelia recurrentis A1 6919215 YP_002223115.1 CDS flaA NC_011244.1 723795 724844 D flagellar filament outer layer protein 723795..724844 Borrelia recurrentis A1 6919216 YP_002223116.1 CDS cheA-2 NC_011244.1 724915 727506 D chemotaxis histidine kinase 724915..727506 Borrelia recurrentis A1 6919217 YP_002223117.1 CDS cheW-3 NC_011244.1 727512 728909 D purine-binding chemotaxis protein CheW 727512..728909 Borrelia recurrentis A1 6919218 YP_002223118.1 CDS cheX NC_011244.1 728921 729406 D chemotaxis protein CheX 728921..729406 Borrelia recurrentis A1 6919219 YP_002223119.1 CDS cheY3 NC_011244.1 729455 729895 D chemotaxis response regulator 729455..729895 Borrelia recurrentis A1 6919220 YP_002223120.1 CDS BRE_679 NC_011244.1 729908 730423 R hypothetical protein complement(729908..730423) Borrelia recurrentis A1 6919221 YP_002223121.1 CDS BRE_680 NC_011244.1 730420 731469 R hypothetical protein complement(730420..731469) Borrelia recurrentis A1 6919222 YP_002223122.1 CDS BRE_681 NC_011244.1 731463 732326 R hypothetical protein complement(731463..732326) Borrelia recurrentis A1 6919223 YP_002223123.1 CDS gph NC_011244.1 732323 733009 R phosphoglycolate phosphatase complement(732323..733009) Borrelia recurrentis A1 6919224 YP_002223124.1 CDS mglA NC_011244.1 733193 734776 D ribose/galactose ABC transporter, ATP-binding protein 733193..734776 Borrelia recurrentis A1 6919225 YP_002223125.1 CDS rbsC-1 NC_011244.1 734780 735928 D ribose/galactose ABC transporter, permease protein 734780..735928 Borrelia recurrentis A1 6919226 YP_002223126.1 CDS rbsC-2 NC_011244.1 735900 736826 D ribose/galactose ABC transporter, permease protein 735900..736826 Borrelia recurrentis A1 6919227 YP_002223127.1 CDS mcp-4 NC_011244.1 736994 739201 D methyl-accepting chemotaxis protein 736994..739201 Borrelia recurrentis A1 6919228 YP_002223128.1 CDS mcp-5 NC_011244.1 739231 741138 D methyl-accepting chemotaxis protein 739231..741138 Borrelia recurrentis A1 6919229 YP_002223129.1 CDS mnmA NC_011244.1 741194 742258 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(741194..742258) Borrelia recurrentis A1 6919230 YP_002223130.1 CDS BRE_689 NC_011244.1 742356 743582 D 3-hydroxy-3-methylglutaryl-CoA synthase 742356..743582 Borrelia recurrentis A1 6919231 YP_002223131.1 CDS BRE_690 NC_011244.1 743551 744630 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 743551..744630 Borrelia recurrentis A1 6919232 YP_002223132.1 CDS mvaA NC_011244.1 744620 745870 D 3-hydroxy-3-methylglutaryl-CoA reductase 744620..745870 Borrelia recurrentis A1 6919233 YP_002223133.1 CDS mvaD NC_011244.1 745872 746813 D mevalonate pyrophosphate decarboxylase 745872..746813 Borrelia recurrentis A1 6919234 YP_002223134.1 CDS BRE_693 NC_011244.1 746801 747742 D phosphomevalonate kinase, putative 746801..747742 Borrelia recurrentis A1 6919235 YP_002223135.1 CDS mvaK NC_011244.1 747743 748636 D mevalonate kinase 747743..748636 Borrelia recurrentis A1 6919236 YP_002223136.1 CDS BRE_696 NC_011244.1 748888 749340 R Possible lipoprotein (SpLip); hypothetical protein complement(748888..749340) Borrelia recurrentis A1 6919238 YP_002223137.1 CDS napA_2 NC_011244.1 749410 749913 D neutrophil activating protein 749410..749913 Borrelia recurrentis A1 6919239 YP_002223138.1 CDS fus-2 NC_011244.1 750044 752068 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 750044..752068 Borrelia recurrentis A1 6919240 YP_002223139.1 CDS xylR-1 NC_011244.1 752345 753553 D xylose operon regulatory protein 752345..753553 Borrelia recurrentis A1 6919241 YP_002223140.1 CDS ffh NC_011244.1 753613 754962 D signal recognition particle protein 753613..754962 Borrelia recurrentis A1 6919242 YP_002223141.1 CDS rpsP NC_011244.1 754959 755210 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 754959..755210 Borrelia recurrentis A1 6919243 YP_002223142.1 CDS BRE_702 NC_011244.1 755220 755468 D putative RNA-binding protein; amidation motif (Prosite); hypothetical protein 755220..755468 Borrelia recurrentis A1 6919244 YP_002223143.1 CDS rimM NC_011244.1 755472 755972 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 755472..755972 Borrelia recurrentis A1 6919245 YP_002223144.1 CDS trmD NC_011244.1 755969 756691 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 755969..756691 Borrelia recurrentis A1 6919246 YP_002223145.1 CDS rplS NC_011244.1 756666 757034 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 756666..757034 Borrelia recurrentis A1 6919247 YP_002223146.1 CDS BRE_706 NC_011244.1 757965 758525 D hypothetical protein 757965..758525 Borrelia recurrentis A1 6919248 YP_002223147.1 CDS coaD NC_011244.1 758528 759025 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 758528..759025 Borrelia recurrentis A1 6919249 YP_002223148.1 CDS rpmF NC_011244.1 759077 759259 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 759077..759259 Borrelia recurrentis A1 6919250 YP_002223149.1 CDS acpP NC_011244.1 759261 759524 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 759261..759524 Borrelia recurrentis A1 6919251 YP_002223150.1 CDS rnc NC_011244.1 759530 760261 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 759530..760261 Borrelia recurrentis A1 6919252 YP_002223151.1 CDS papS NC_011244.1 760233 761531 R tRNA nucleotidyltransferase (CCA-adding enzyme) complement(760233..761531) Borrelia recurrentis A1 6919253 YP_002223152.1 CDS BRE_712 NC_011244.1 761696 763348 D LEUCINE_ZIPPER motif (Prosite); hypothetical protein 761696..763348 Borrelia recurrentis A1 6919254 YP_002223153.1 CDS BRE_713 NC_011244.1 763355 763672 D amidation motif (Prosite); hypothetical protein 763355..763672 Borrelia recurrentis A1 6919255 YP_002223154.1 CDS BRE_716 NC_011244.1 764139 765173 D amidation motif (Prosite); hypothetical protein 764139..765173 Borrelia recurrentis A1 6919258 YP_002223155.1 CDS dnaG NC_011244.1 765181 766956 D DNA primase 765181..766956 Borrelia recurrentis A1 6919259 YP_002223156.1 CDS rpoD NC_011244.1 766949 768841 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 766949..768841 Borrelia recurrentis A1 6919260 YP_002223157.1 CDS BRE_719 NC_011244.1 768838 769614 D hypothetical protein 768838..769614 Borrelia recurrentis A1 6919261 YP_002223158.1 CDS BRE_720 NC_011244.1 770009 770974 D hypothetical protein 770009..770974 Borrelia recurrentis A1 6919262 YP_002223159.1 CDS mreB-1 NC_011244.1 770987 772036 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 770987..772036 Borrelia recurrentis A1 6919263 YP_002223160.1 CDS mreC NC_011244.1 772039 772884 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 772039..772884 Borrelia recurrentis A1 6919264 YP_002223161.1 CDS BRE_723 NC_011244.1 772881 773363 D hypothetical protein 772881..773363 Borrelia recurrentis A1 6919265 YP_002223162.1 CDS pbp-2 NC_011244.1 773369 775168 D penicillin-binding protein 773369..775168 Borrelia recurrentis A1 6919266 YP_002223163.1 CDS mreB-2 NC_011244.1 775172 776491 D rod shape-determining protein 775172..776491 Borrelia recurrentis A1 6919267 YP_002223164.1 CDS thrS NC_011244.1 776649 778400 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 776649..778400 Borrelia recurrentis A1 6919268 YP_002223165.1 CDS BRE_727 NC_011244.1 778402 779025 D Possible lipoprotein (SpLip); CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 778402..779025 Borrelia recurrentis A1 6919269 YP_002223166.1 CDS BRE_728 NC_011244.1 779006 780454 D hypothetical protein 779006..780454 Borrelia recurrentis A1 6919270 YP_002223167.1 CDS BRE_729 NC_011244.1 780431 780952 R adenylyl cyclase, CyaB-type, putative complement(780431..780952) Borrelia recurrentis A1 6919271 YP_002223168.1 CDS ntpJ NC_011244.1 781043 782362 D K transport protein 781043..782362 Borrelia recurrentis A1 6919272 YP_002223169.1 CDS BRE_731 NC_011244.1 782369 783151 D hypothetical protein 782369..783151 Borrelia recurrentis A1 6919273 YP_002223170.1 CDS ylxH-3 NC_011244.1 783164 784135 D MinD-related ATP-binding protein 783164..784135 Borrelia recurrentis A1 6919274 YP_002223171.1 CDS pfk NC_011244.1 784172 785515 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 784172..785515 Borrelia recurrentis A1 6919275 YP_002223172.1 CDS nox NC_011244.1 785541 786872 R CoADR; specific for coenzyme A disulfide; requires NADH; involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide; coenzyme A disulfide reductase complement(785541..786872) Borrelia recurrentis A1 6919276 YP_002223173.1 CDS gltP NC_011244.1 786885 788267 R glutamate transporter complement(786885..788267) Borrelia recurrentis A1 6919277 YP_002223174.1 CDS pgi NC_011244.1 788311 789885 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(788311..789885) Borrelia recurrentis A1 6919278 YP_002223175.1 CDS BRE_737 NC_011244.1 789922 790326 R hypothetical protein complement(789922..790326) Borrelia recurrentis A1 6919279 YP_002223176.1 CDS pbp-3 NC_011244.1 790333 793110 R penicillin-binding protein complement(790333..793110) Borrelia recurrentis A1 6919280 YP_002223177.1 CDS BRE_739 NC_011244.1 793600 794388 D hypothetical protein 793600..794388 Borrelia recurrentis A1 6919281 YP_002223178.1 CDS BRE_740 NC_011244.1 794372 795484 D TPR domain protein 794372..795484 Borrelia recurrentis A1 6919282 YP_002223179.1 CDS BRE_741 NC_011244.1 795492 796496 R amidation motif (Prosite); hypothetical protein complement(795492..796496) Borrelia recurrentis A1 6919283 YP_002223180.1 CDS rlpA NC_011244.1 796596 797426 D rare lipoprotein A 796596..797426 Borrelia recurrentis A1 6919284 YP_002223181.1 CDS BRE_743 NC_011244.1 797416 799470 R ATP-dependent helicase, DinG family complement(797416..799470) Borrelia recurrentis A1 6919285 YP_002223182.1 CDS BRE_744 NC_011244.1 799704 800723 D histidine phosphokinase/phophatase, putative 799704..800723 Borrelia recurrentis A1 6919286 YP_002223183.1 CDS valS NC_011244.1 800723 803356 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 800723..803356 Borrelia recurrentis A1 6919287 YP_002223184.1 CDS groES NC_011244.1 804257 804535 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(804257..804535) Borrelia recurrentis A1 6919289 YP_002223185.1 CDS BRE_748 NC_011244.1 804673 806304 D ABC transporter, ATP-binding protein 804673..806304 Borrelia recurrentis A1 6919290 YP_002223186.1 CDS BRE_749 NC_011244.1 806327 808012 D amidation motif (Prosite); hypothetical protein 806327..808012 Borrelia recurrentis A1 6919291 YP_002223187.1 CDS BRE_750 NC_011244.1 808141 810390 D antigen, p83/100 808141..810390 Borrelia recurrentis A1 6919292 YP_002223188.1 CDS nth NC_011244.1 810730 811347 D endonuclease III 810730..811347 Borrelia recurrentis A1 6919295 YP_002223189.1 CDS oppC-2 NC_011244.1 811355 812206 R oligopeptide ABC transporter, permease protein complement(811355..812206) Borrelia recurrentis A1 6919296 YP_002223190.1 CDS oppB-2 NC_011244.1 812206 813153 R oligopeptide ABC transporter, permease protein complement(812206..813153) Borrelia recurrentis A1 6919297 YP_002223191.1 CDS BRE_756 NC_011244.1 813189 813629 R hypothetical protein complement(813189..813629) Borrelia recurrentis A1 6919298 YP_002223192.1 CDS BRE_757 NC_011244.1 813781 815352 D uncharaterized conserved protein 813781..815352 Borrelia recurrentis A1 6919299 YP_002223193.1 CDS BRE_758 NC_011244.1 815862 816911 R hypothetical protein complement(815862..816911) Borrelia recurrentis A1 6919300 YP_002223194.1 CDS BRE_759 NC_011244.1 816871 818373 R amidation motif (Prosite); hypothetical protein complement(816871..818373) Borrelia recurrentis A1 6919301 YP_002223195.1 CDS BRE_760 NC_011244.1 818381 819115 R putative ABC-2 type transport system permease protein complement(818381..819115) Borrelia recurrentis A1 6919302 YP_002223196.1 CDS BRE_761 NC_011244.1 819112 820038 R putative ABC-2 type transport system ATP-binding protein complement(819112..820038) Borrelia recurrentis A1 6919303 YP_002223197.1 CDS BRE_762 NC_011244.1 820060 821019 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(820060..821019) Borrelia recurrentis A1 6919304 YP_002223198.1 CDS BRE_763 NC_011244.1 821325 822404 R AMIDATION motif (Prosite); hypothetical protein complement(821325..822404) Borrelia recurrentis A1 6919305 YP_002223199.1 CDS clpP NC_011244.1 822555 823145 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 822555..823145 Borrelia recurrentis A1 6919306 YP_002223200.1 CDS BRE_765 NC_011244.1 823087 823851 D LEUCINE_ZIPPER motif (Prosite); Possible lipoprotein (SpLip); putative lipoprotein 823087..823851 Borrelia recurrentis A1 6919307 YP_002223201.1 CDS BRE_767 NC_011244.1 823996 824862 R hypothetical protein complement(823996..824862) Borrelia recurrentis A1 6919309 YP_002223202.1 CDS BRE_768 NC_011244.1 824897 825226 R hypothetical protein complement(824897..825226) Borrelia recurrentis A1 6919310 YP_002223203.1 CDS BRE_769 NC_011244.1 825327 826214 D RGD motif (Prosite); hypothetical protein 825327..826214 Borrelia recurrentis A1 6919311 YP_002223204.1 CDS rrp-2 NC_011244.1 826429 827784 R response regulatory protein complement(826429..827784) Borrelia recurrentis A1 6919312 YP_002223205.1 CDS BRE_771 NC_011244.1 827777 828937 R sensory transduction histidine kinase, putative complement(827777..828937) Borrelia recurrentis A1 6919313 YP_002223206.1 CDS BRE_772 NC_011244.1 828937 829980 R DNA polymerase III gamma and tau subunit complement(828937..829980) Borrelia recurrentis A1 6919314 YP_002223207.1 CDS BRE_773 NC_011244.1 829998 830492 R colicin V production protein, putative complement(829998..830492) Borrelia recurrentis A1 6919315 YP_002223208.1 CDS murG NC_011244.1 830461 831570 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(830461..831570) Borrelia recurrentis A1 6919316 YP_002223209.1 CDS pdxK NC_011244.1 831700 832494 R pyridoxal kinase complement(831700..832494) Borrelia recurrentis A1 6919317 YP_002223210.1 CDS gcp NC_011244.1 832491 833507 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(832491..833507) Borrelia recurrentis A1 6919318 YP_002223211.1 CDS BRE_777 NC_011244.1 833476 834399 R hypothetical protein complement(833476..834399) Borrelia recurrentis A1 6919319 YP_002223212.1 CDS rpoS NC_011244.1 834445 835248 R RNA polymerase sigma factor complement(834445..835248) Borrelia recurrentis A1 6919320 YP_002223213.1 CDS flgJ NC_011244.1 835360 835692 R flagellum-specific muramidase complement(835360..835692) Borrelia recurrentis A1 6919321 YP_002223214.1 CDS flgI NC_011244.1 835695 836675 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body P-ring protein complement(835695..836675) Borrelia recurrentis A1 6919322 YP_002223215.1 CDS BRE_781 NC_011244.1 836871 837509 R hypothetical protein complement(836871..837509) Borrelia recurrentis A1 6919323 YP_002223216.1 CDS flgG NC_011244.1 837506 838303 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(837506..838303) Borrelia recurrentis A1 6919324 YP_002223217.1 CDS flhO NC_011244.1 838318 839193 R flagellar hook-basal body complex protein complement(838318..839193) Borrelia recurrentis A1 6919325 YP_002223218.1 CDS BRE_784 NC_011244.1 839395 839967 D hypothetical protein 839395..839967 Borrelia recurrentis A1 6919326 YP_002223219.1 CDS apt NC_011244.1 839972 840532 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 839972..840532 Borrelia recurrentis A1 6919327 YP_002223220.1 CDS rplU NC_011244.1 840661 840981 D 50S ribosomal protein L21 840661..840981 Borrelia recurrentis A1 6919328 YP_002223221.1 CDS BRE_787 NC_011244.1 840985 841317 D hypothetical protein 840985..841317 Borrelia recurrentis A1 6919329 YP_002223222.1 CDS rpmA NC_011244.1 841304 841549 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 841304..841549 Borrelia recurrentis A1 6919330 YP_002223223.1 CDS obgE NC_011244.1 841599 842582 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 841599..842582 Borrelia recurrentis A1 6919331 YP_002223224.1 CDS nadD NC_011244.1 842674 843249 D nicotinate-nucleotide adenylyltransferase 842674..843249 Borrelia recurrentis A1 6919332 YP_002223225.1 CDS BRE_791 NC_011244.1 843250 844434 D hypothetical protein 843250..844434 Borrelia recurrentis A1 6919333 YP_002223226.1 CDS BRE_792 NC_011244.1 844400 844759 D hypothetical protein 844400..844759 Borrelia recurrentis A1 6919334 YP_002223227.1 CDS BRE_793 NC_011244.1 844858 845148 D stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 844858..845148 Borrelia recurrentis A1 6919335 YP_002223228.1 CDS ctc NC_011244.1 845313 845861 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 845313..845861 Borrelia recurrentis A1 6919337 YP_002223229.1 CDS pth NC_011244.1 845867 846433 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 845867..846433 Borrelia recurrentis A1 6919338 YP_002223230.1 CDS BRE_797 NC_011244.1 846430 847749 D cell cycle protein 846430..847749 Borrelia recurrentis A1 6919339 YP_002223231.1 CDS ftsH NC_011244.1 847746 849656 D cell division protein 847746..849656 Borrelia recurrentis A1 6919340 YP_002223232.1 CDS BRE_799 NC_011244.1 849679 851157 D hypothetical protein 849679..851157 Borrelia recurrentis A1 6919341 YP_002223233.1 CDS BRE_800 NC_011244.1 851171 852811 D Possible lipoprotein (SpLip); trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain 851171..852811 Borrelia recurrentis A1 6919342 YP_002223234.1 CDS tdk NC_011244.1 852817 853953 D thymidine kinase 852817..853953 Borrelia recurrentis A1 6919343 YP_002223235.1 CDS BRE_802 NC_011244.1 853961 854578 R hypothetical protein complement(853961..854578) Borrelia recurrentis A1 6919344 YP_002223236.1 CDS tmk NC_011244.1 854611 855219 R thymidylate kinase complement(854611..855219) Borrelia recurrentis A1 6919345 YP_002223237.1 CDS BRE_804 NC_011244.1 855294 859685 D SERPIN motif (Prosite); hypothetical protein 855294..859685 Borrelia recurrentis A1 6919346 YP_002223238.1 CDS BRE_805 NC_011244.1 859633 862155 D outer membrane protein 859633..862155 Borrelia recurrentis A1 6919347 YP_002223239.1 CDS BRE_806 NC_011244.1 862188 862706 D hypothetical protein 862188..862706 Borrelia recurrentis A1 6919348 YP_002223240.1 CDS BRE_807 NC_011244.1 862737 863246 R hypothetical protein complement(862737..863246) Borrelia recurrentis A1 6919349 YP_002223241.1 CDS mutS NC_011244.1 863306 865894 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 863306..865894 Borrelia recurrentis A1 6919350 YP_002223242.1 CDS BRE_810 NC_011244.1 866626 867057 D amidation motif (Prosite); hypothetical protein 866626..867057 Borrelia recurrentis A1 6919352 YP_002223243.1 CDS nusA NC_011244.1 867032 868516 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 867032..868516 Borrelia recurrentis A1 6919353 YP_002223244.1 CDS infB NC_011244.1 868497 871136 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 868497..871136 Borrelia recurrentis A1 6919354 YP_002223245.1 CDS rbfA NC_011244.1 871126 871515 D ribosome-binding factor A 871126..871515 Borrelia recurrentis A1 6919355 YP_002223246.1 CDS truB NC_011244.1 871525 872370 D tRNA pseudouridine 55 synthase 871525..872370 Borrelia recurrentis A1 6919356 YP_002223247.1 CDS rpsO NC_011244.1 872592 872933 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 872592..872933 Borrelia recurrentis A1 6919357 YP_002223248.1 CDS pnpA NC_011244.1 872947 875100 D polynucleotide phosphorylase/polyadenylase 872947..875100 Borrelia recurrentis A1 6919358 YP_002223249.1 CDS BRE_817 NC_011244.1 875110 876621 D Probable lipoprotein (SpLip); hypothetical protein 875110..876621 Borrelia recurrentis A1 6919359 YP_002223250.1 CDS BRE_818 NC_011244.1 876596 877885 D AKH motif (Prosite); hypothetical protein 876596..877885 Borrelia recurrentis A1 6919360 YP_002223251.1 CDS BRE_819 NC_011244.1 877741 878949 D hypothetical protein 877741..878949 Borrelia recurrentis A1 6919444 YP_002223252.1 CDS tgt NC_011244.1 878967 880094 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 878967..880094 Borrelia recurrentis A1 6919445 YP_002223253.1 CDS mviN NC_011244.1 880087 881610 D virulence factor MviN protein 880087..881610 Borrelia recurrentis A1 6919446 YP_002223254.1 CDS BRE_822 NC_011244.1 881607 883037 D hypothetical protein 881607..883037 Borrelia recurrentis A1 6919447 YP_002223255.1 CDS dfp NC_011244.1 883031 884293 R pantothenate metabolism flavoprotein complement(883031..884293) Borrelia recurrentis A1 6919448 YP_002223256.1 CDS panF NC_011244.1 884449 885870 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 884449..885870 Borrelia recurrentis A1 6919449 YP_002223257.1 CDS rluA NC_011244.1 885875 886849 D RNA pseudouridylate synthase family protein 885875..886849 Borrelia recurrentis A1 6919450 YP_002223258.1 CDS BRE_826 NC_011244.1 886818 887759 D hypothetical protein 886818..887759 Borrelia recurrentis A1 6919451 YP_002223259.1 CDS murC NC_011244.1 887707 889167 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 887707..889167 Borrelia recurrentis A1 6919452 YP_002223260.1 CDS BRE_828 NC_011244.1 889179 890048 D hypothetical protein 889179..890048 Borrelia recurrentis A1 6919453 YP_002223261.1 CDS BRE_829 NC_011244.1 890045 890584 D catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 890045..890584 Borrelia recurrentis A1 6919454 YP_002223262.1 CDS BRE_830 NC_011244.1 890574 890804 D hypothetical protein 890574..890804 Borrelia recurrentis A1 6919455 YP_002223263.1 CDS miaA NC_011244.1 890791 891693 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 890791..891693 Borrelia recurrentis A1 6919456 YP_002223264.1 CDS BRE_832 NC_011244.1 891849 892205 R Possible lipoprotein (SpLip); hypothetical protein complement(891849..892205) Borrelia recurrentis A1 6919457 YP_002223265.1 CDS BRE_833 NC_011244.1 892283 892831 D hypothetical protein 892283..892831 Borrelia recurrentis A1 6919458 YP_002223266.1 CDS BRE_834 NC_011244.1 892803 893612 R hypothetical protein complement(892803..893612) Borrelia recurrentis A1 6919459 YP_002223267.1 CDS BRE_835 NC_011244.1 893605 894117 R hypothetical protein complement(893605..894117) Borrelia recurrentis A1 6919460 YP_002223268.1 CDS nagE NC_011244.1 894163 895599 R Sugar Specific PTS family, n-acetylglucosamine-specific enzyme IIABC complement(894163..895599) Borrelia recurrentis A1 6919461 YP_002223269.1 CDS hrpA NC_011244.1 895689 898175 R ATP-dependent helicase complement(895689..898175) Borrelia recurrentis A1 6919462 YP_002223270.1 CDS topA NC_011244.1 898179 900716 R DNA topoisomerase I complement(898179..900716) Borrelia recurrentis A1 6919463 YP_002223271.1 CDS sbcD NC_011244.1 900793 902025 D exonuclease SbcD 900793..902025 Borrelia recurrentis A1 6919464 YP_002223272.1 CDS sbcC NC_011244.1 902012 904867 D exonuclease SbcC 902012..904867 Borrelia recurrentis A1 6919465 YP_002223273.1 CDS cutC NC_011244.1 905899 906486 D copper homeostasis protein cutC 905899..906486 Borrelia recurrentis A1 6919467 YP_002223274.1 CDS BRE_843 NC_011244.1 906558 907382 R Probable lipoprotein (SpLip); putative lipoprotein complement(906558..907382) Borrelia recurrentis A1 6919468 YP_002223275.1 CDS ileS NC_011244.1 907370 910504 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(907370..910504) Borrelia recurrentis A1 6919469 YP_002223276.1 CDS clpC NC_011244.1 910489 912723 R ATP-dependent Clp protease, subunit C complement(910489..912723) Borrelia recurrentis A1 6919470 YP_002223277.1 CDS cpsG NC_011244.1 912740 914449 R phosphomannomutase complement(912740..914449) Borrelia recurrentis A1 6919471 YP_002223278.1 CDS uvrB NC_011244.1 914565 916529 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 914565..916529 Borrelia recurrentis A1 6919472 YP_002223279.1 CDS uvrA NC_011244.1 916557 919397 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 916557..919397 Borrelia recurrentis A1 6919473 YP_002223280.1 CDS BRE_849 NC_011244.1 919352 922810 D hypothetical protein 919352..922810 Borrelia recurrentis A1 6919474 YP_002223281.1 CDS BRE_850 NC_011244.1 922858 923451 R hypothetical protein complement(922858..923451) Borrelia recurrentis A1 6919475 YP_002223282.1 CDS BRE_851 NC_011244.1 923458 925032 R Probable lipoprotein (SpLip); putative lipoprotein complement(923458..925032) Borrelia recurrentis A1 6919476 YP_002223283.1 CDS arcA NC_011244.1 925218 926447 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 925218..926447 Borrelia recurrentis A1 6919477 YP_002223284.1 CDS arcB NC_011244.1 926411 927460 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 926411..927460 Borrelia recurrentis A1 6919478 YP_002223285.1 CDS BRE_854 NC_011244.1 927513 928928 D hypothetical protein 927513..928928 Borrelia recurrentis A1 6919479 YP_002223286.1 CDS BRE_856 NC_011244.1 930214 930951 D putative permease 930214..930951 Borrelia recurrentis A1 6919481 YP_002223323.1 CDS BRE_1001 NC_011246.1 5 658 R hypothetical protein complement(5..658) Borrelia recurrentis A1 6919549 YP_002223324.1 CDS BRE_1002 NC_011246.1 646 1497 D hypothetical protein 646..1497 Borrelia recurrentis A1 6919550 YP_002223325.1 CDS BRE_1003 NC_011246.1 1920 2939 D Probable lipoprotein (SpLip); hypothetical protein 1920..2939 Borrelia recurrentis A1 6919551 YP_002223326.1 CDS BRE_1004 NC_011246.1 3198 3845 R hypothetical protein complement(3198..3845) Borrelia recurrentis A1 6919552 YP_002223327.1 CDS BRE_1005 NC_011246.1 4043 4837 R hypothetical protein complement(4043..4837) Borrelia recurrentis A1 6919553 YP_002223328.1 CDS BRE_1006 NC_011246.1 5146 6114 R Possible lipoprotein (SpLip); hypothetical protein complement(5146..6114) Borrelia recurrentis A1 6919554 YP_002223329.1 CDS BRE_1007 NC_011246.1 6357 7409 R hypothetical protein complement(6357..7409) Borrelia recurrentis A1 6919555 YP_002223330.1 CDS BRE_1008 NC_011246.1 7750 8787 R RGD motif (Prosite); Possible lipoprotein (SpLip); hypothetical protein complement(7750..8787) Borrelia recurrentis A1 6919556 YP_002223331.1 CDS BRE_1009 NC_011246.1 9128 10057 R RGD motif (Prosite); hypothetical protein complement(9128..10057) Borrelia recurrentis A1 6919557 YP_002223332.1 CDS BRE_1011 NC_011246.1 11357 12163 R hypothetical protein complement(11357..12163) Borrelia recurrentis A1 6919559 YP_002223333.1 CDS BRE_1014 NC_011246.1 14225 14998 R Probable lipoprotein (SpLip); putative lipoprotein complement(14225..14998) Borrelia recurrentis A1 6919562 YP_002223334.1 CDS BRE_1015 NC_011246.1 15560 16444 R hypothetical protein complement(15560..16444) Borrelia recurrentis A1 6919563 YP_002223335.1 CDS BRE_1017 NC_011246.1 18280 19107 D hypothetical protein 18280..19107 Borrelia recurrentis A1 6919565 YP_002223336.1 CDS BRE_1018 NC_011246.1 19547 20353 D hypothetical protein 19547..20353 Borrelia recurrentis A1 6919566 YP_002223337.1 CDS BRE_1019 NC_011246.1 20683 21483 D hypothetical protein 20683..21483 Borrelia recurrentis A1 6919567 YP_002223338.1 CDS BRE_1021 NC_011246.1 22854 23594 R Probable lipoprotein (SpLip); putative lipoprotein complement(22854..23594) Borrelia recurrentis A1 6919569 YP_002223339.1 CDS BRE_1023 NC_011246.1 25000 25875 R Possible lipoprotein (SpLip); hypothetical protein complement(25000..25875) Borrelia recurrentis A1 6919571 YP_002223340.1 CDS BRE_1024 NC_011246.1 26093 26890 R Probable lipoprotein (SpLip); putative lipoprotein complement(26093..26890) Borrelia recurrentis A1 6919572 YP_002223341.1 CDS BRE_1025 NC_011246.1 27026 27814 R Probable lipoprotein (SpLip); putative lipoprotein complement(27026..27814) Borrelia recurrentis A1 6919573 YP_002223342.1 CDS BRE_1026 NC_011246.1 27842 28618 R Probable lipoprotein (SpLip); putative lipoprotein complement(27842..28618) Borrelia recurrentis A1 6919574 YP_002223343.1 CDS BRE_1027 NC_011246.1 28637 29413 R Probable lipoprotein (SpLip); putative lipoprotein complement(28637..29413) Borrelia recurrentis A1 6919575 YP_002223344.1 CDS BRE_1029 NC_011246.1 31477 32364 R Probable lipoprotein (SpLip); putative lipoprotein complement(31477..32364) Borrelia recurrentis A1 6919577 YP_002223345.1 CDS BRE_1030 NC_011246.1 32596 33336 R SBP_BACTERIAL_3 motif (Prosite); hypothetical protein complement(32596..33336) Borrelia recurrentis A1 6919578 YP_002223346.1 CDS BRE_1031 NC_011246.1 33572 34633 R Probable lipoprotein (SpLip); hypothetical protein complement(33572..34633) Borrelia recurrentis A1 6919579 YP_002223347.1 CDS BRE_1032 NC_011246.1 34971 35813 R PRENYLATION motif (Prosite); Probable lipoprotein (SpLip); hypothetical protein complement(34971..35813) Borrelia recurrentis A1 6919580 YP_002223348.1 CDS BRE_1034 NC_011246.1 36870 37466 R hypothetical protein complement(36870..37466) Borrelia recurrentis A1 6919582 YP_002223349.1 CDS BRE_1035 NC_011246.1 37632 38240 R hypothetical protein complement(37632..38240) Borrelia recurrentis A1 6919583 YP_002223350.1 CDS BRE_1036 NC_011246.1 38426 38770 R RGD motif (Prosite); hypothetical protein complement(38426..38770) Borrelia recurrentis A1 6919584 YP_002223351.1 CDS BRE_1037 NC_011246.1 38812 39189 R Probable lipoprotein (SpLip); putative lipoprotein complement(38812..39189) Borrelia recurrentis A1 6919585 YP_002223352.1 CDS BRE_1038 NC_011246.1 39396 40529 R transposase IS605 OrfB complement(39396..40529) Borrelia recurrentis A1 6919586 YP_002223353.1 CDS BRE_1039 NC_011246.1 40563 40982 D transposase IS200-like protein 40563..40982 Borrelia recurrentis A1 6919587 YP_002223354.1 CDS BRE_1040 NC_011246.1 41143 42039 R hypothetical protein complement(41143..42039) Borrelia recurrentis A1 6919588 YP_002223355.1 CDS BRE_1041 NC_011246.1 43168 43932 R Probable lipoprotein (SpLip); hypothetical protein complement(43168..43932) Borrelia recurrentis A1 6919589 YP_002223356.1 CDS BRE_1042 NC_011246.1 44121 44840 R Probable lipoprotein (SpLip); putative lipoprotein complement(44121..44840) Borrelia recurrentis A1 6919590 YP_002223357.1 CDS BRE_1043 NC_011246.1 44990 45787 R Probable lipoprotein (SpLip); hypothetical protein complement(44990..45787) Borrelia recurrentis A1 6919591 YP_002223358.1 CDS BRE_1044 NC_011246.1 46106 46795 R Probable lipoprotein (SpLip); hypothetical protein complement(46106..46795) Borrelia recurrentis A1 6919592 YP_002223359.1 CDS nrdF NC_011246.1 47132 48097 R ribonucleoside-diphosphate reductase subunit beta complement(47132..48097) Borrelia recurrentis A1 6919593 YP_002223360.1 CDS nrdE NC_011246.1 48142 50265 R ribonucleoside-diphosphate reductase subunit alpha complement(48142..50265) Borrelia recurrentis A1 6919484 YP_002223361.1 CDS nrdI NC_011246.1 50189 50554 R ribonucleoprotein complement(50189..50554) Borrelia recurrentis A1 6919485 YP_002223362.1 CDS BRE_1048 NC_011246.1 50630 51448 R thymidylate synthase protein complement(50630..51448) Borrelia recurrentis A1 6919486 YP_002223363.1 CDS BRE_1049 NC_011246.1 51874 52710 D Probable lipoprotein (SpLip); p23-like cell envelope protein 51874..52710 Borrelia recurrentis A1 6919487 YP_002223364.1 CDS BRE_1050 NC_011246.1 53012 53842 D Possible lipoprotein (SpLip); p23-like cell envelope protein 53012..53842 Borrelia recurrentis A1 6919488 YP_002223365.1 CDS BRE_1051 NC_011246.1 54062 54559 R hypothetical protein complement(54062..54559) Borrelia recurrentis A1 6919489 YP_002223366.1 CDS BRE_1052 NC_011246.1 54734 55351 R hypothetical protein complement(54734..55351) Borrelia recurrentis A1 6919490 YP_002223367.1 CDS BRE_1054 NC_011246.1 56442 57434 R outer membrane protein complement(56442..57434) Borrelia recurrentis A1 6919492 YP_002223368.1 CDS BRE_1055 NC_011246.1 57473 58039 R hypothetical protein complement(57473..58039) Borrelia recurrentis A1 6919493 YP_002223369.1 CDS BRE_1056 NC_011246.1 58064 59530 R hypothetical protein complement(58064..59530) Borrelia recurrentis A1 6919494 YP_002223370.1 CDS BRE_1057 NC_011246.1 59544 59762 R hypothetical protein complement(59544..59762) Borrelia recurrentis A1 6919495 YP_002223371.1 CDS BRE_1058 NC_011246.1 59787 60209 R hypothetical protein complement(59787..60209) Borrelia recurrentis A1 6919496 YP_002223372.1 CDS BRE_1059 NC_011246.1 60213 60635 R hypothetical protein complement(60213..60635) Borrelia recurrentis A1 6919497 YP_002223373.1 CDS BRE_1060 NC_011246.1 60632 61708 R hypothetical protein complement(60632..61708) Borrelia recurrentis A1 6919498 YP_002223374.1 CDS BRE_1061 NC_011246.1 61754 62302 R hypothetical protein complement(61754..62302) Borrelia recurrentis A1 6919499 YP_002223375.1 CDS BRE_1062 NC_011246.1 62335 62709 R hypothetical protein complement(62335..62709) Borrelia recurrentis A1 6919500 YP_002223376.1 CDS BRE_1063 NC_011246.1 62706 63110 R hypothetical protein complement(62706..63110) Borrelia recurrentis A1 6919501 YP_002223377.1 CDS BRE_1064 NC_011246.1 63101 64024 R hypothetical protein complement(63101..64024) Borrelia recurrentis A1 6919502 YP_002223378.1 CDS BRE_1068 NC_011246.1 66773 68053 R Probable lipoprotein (SpLip); putative lipoprotein complement(66773..68053) Borrelia recurrentis A1 6919506 YP_002223379.1 CDS BRE_1069 NC_011246.1 68307 69386 D putative Viral A-type inclusion protein repeat 68307..69386 Borrelia recurrentis A1 6919507 YP_002223380.1 CDS BRE_1070 NC_011246.1 69709 70311 D Probable lipoprotein (SpLip); putative lipoprotein 69709..70311 Borrelia recurrentis A1 6919508 YP_002223381.1 CDS BRE_1072 NC_011246.1 72217 74085 D Viral A-type inclusion protein repeat 72217..74085 Borrelia recurrentis A1 6919510 YP_002223382.1 CDS BRE_1073 NC_011246.1 74289 76148 D Possible lipoprotein (SpLip); putative lipoprotein 74289..76148 Borrelia recurrentis A1 6919511 YP_002223383.1 CDS BRE_1074 NC_011246.1 76293 77726 D Possible lipoprotein (SpLip); putative lipoprotein 76293..77726 Borrelia recurrentis A1 6919512 YP_002223384.1 CDS BRE_1075 NC_011246.1 79150 81447 R ATP_GTP_A motif (Prosite); hypothetical protein complement(79150..81447) Borrelia recurrentis A1 6919513 YP_002223385.1 CDS BRE_1076 NC_011246.1 81637 82623 R hypothetical protein complement(81637..82623) Borrelia recurrentis A1 6919514 YP_002223386.1 CDS BRE_1077 NC_011246.1 82817 83449 R hypothetical protein complement(82817..83449) Borrelia recurrentis A1 6919515 YP_002223387.1 CDS BRE_1078 NC_011246.1 83720 84148 R hypothetical protein complement(83720..84148) Borrelia recurrentis A1 6919516 YP_002223388.1 CDS BRE_1079 NC_011246.1 84384 85196 D Possible lipoprotein (SpLip); p23-like cell envelope protein 84384..85196 Borrelia recurrentis A1 6919517 YP_002223389.1 CDS BRE_1080 NC_011246.1 85460 86260 D p23-like cell envelope protein 85460..86260 Borrelia recurrentis A1 6919518 YP_002223390.1 CDS BRE_1081 NC_011246.1 86782 87312 D hypothetical protein 86782..87312 Borrelia recurrentis A1 6919519 YP_002223391.1 CDS bsr NC_011246.1 87690 88928 R bsr protein complement(87690..88928) Borrelia recurrentis A1 6919520 YP_002223392.1 CDS BRE_1083 NC_011246.1 89046 89597 R hypothetical protein complement(89046..89597) Borrelia recurrentis A1 6919521 YP_002223393.1 CDS pf49 NC_011246.1 90415 90966 R PF49 plasmid partition protein complement(90415..90966) Borrelia recurrentis A1 6919522 YP_002223394.1 CDS pf32 NC_011246.1 91017 91772 R PF32 plasmid partition protein complement(91017..91772) Borrelia recurrentis A1 6919523 YP_002223395.1 CDS ppap1 NC_011246.1 91748 92311 R plasmid partitioning associated protein-1 complement(91748..92311) Borrelia recurrentis A1 6919524 YP_002223396.1 CDS ppap2 NC_011246.1 92339 93448 R plasmid partioning associated protein 2 complement(92339..93448) Borrelia recurrentis A1 6919525 YP_002223397.1 CDS BRE_1088 NC_011246.1 93930 94295 R Probable lipoprotein (SpLip); putative lipoprotein complement(93930..94295) Borrelia recurrentis A1 6919526 YP_002223398.1 CDS BRE_1089 NC_011246.1 94292 94675 R hypothetical protein complement(94292..94675) Borrelia recurrentis A1 6919527 YP_002223399.1 CDS BRE_1090 NC_011246.1 95014 96126 R hypothetical protein complement(95014..96126) Borrelia recurrentis A1 6919528 YP_002223400.1 CDS BRE_1092 NC_011246.1 96750 97610 R hypothetical protein complement(96750..97610) Borrelia recurrentis A1 6919530 YP_002223401.1 CDS BRE_1093 NC_011246.1 97614 97928 R hypothetical protein complement(97614..97928) Borrelia recurrentis A1 6919531 YP_002223402.1 CDS BRE_1094 NC_011246.1 99271 99915 D Probable lipoprotein (SpLip); putative lipoprotein 99271..99915 Borrelia recurrentis A1 6919532 YP_002223403.1 CDS BRE_1095 NC_011246.1 100544 101647 D hypothetical protein 100544..101647 Borrelia recurrentis A1 6919533 YP_002223404.1 CDS BRE_1097 NC_011246.1 103124 104182 D Probable lipoprotein (SpLip); hypothetical protein 103124..104182 Borrelia recurrentis A1 6919535 YP_002223405.1 CDS BRE_1100 NC_011246.1 108369 109166 D putative lipoprotein 108369..109166 Borrelia recurrentis A1 6919538 YP_002223406.1 CDS BRE_1102 NC_011246.1 111063 112715 D putative lipoprotein 111063..112715 Borrelia recurrentis A1 6919540 YP_002223407.1 CDS BRE_1103 NC_011246.1 113038 113673 D hypothetical protein 113038..113673 Borrelia recurrentis A1 6919541 YP_002223408.1 CDS pncA NC_011246.1 115386 116000 D pyrazinamidase/nicotinamidase (pncA) 115386..116000 Borrelia recurrentis A1 6919543 YP_002223409.1 CDS BRE_1106 NC_011246.1 116208 117080 D hypothetical protein 116208..117080 Borrelia recurrentis A1 6919544 YP_002223410.1 CDS BRE_1107 NC_011246.1 117250 117531 D hypothetical protein 117250..117531 Borrelia recurrentis A1 6919545 YP_002223411.1 CDS guaA NC_011246.1 118098 119639 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 118098..119639 Borrelia recurrentis A1 6919546 YP_002223412.1 CDS BRE_1109 NC_011246.1 119669 121120 D inosine-5'-monophosphate dehydrogenase 119669..121120 Borrelia recurrentis A1 6919547 YP_002223413.1 CDS BRE_1110 NC_011246.1 121396 122361 D Probable lipoprotein (SpLip); hypothetical protein 121396..122361 Borrelia recurrentis A1 6919548 YP_002223633.1 CDS BRE_6004 NC_011252.1 5082 6437 R guanine-hypoxanthine permease complement(5082..6437) Borrelia recurrentis A1 6919597 YP_002223634.1 CDS BRE_6005 NC_011252.1 6559 7017 R putative lipoprotein complement(6559..7017) Borrelia recurrentis A1 6919598 YP_002223635.1 CDS BRE_6006 NC_011252.1 7056 7568 R Probable lipoprotein (SpLip); putative lipoprotein complement(7056..7568) Borrelia recurrentis A1 6919599 YP_002223636.1 CDS BRE_6008 NC_011252.1 8318 8884 R Probable lipoprotein (SpLip); putative lipoprotein complement(8318..8884) Borrelia recurrentis A1 6919601 YP_002223637.1 CDS BRE_6009 NC_011252.1 8981 10237 D hypothetical protein 8981..10237 Borrelia recurrentis A1 6919602 YP_002223638.1 CDS malX NC_011252.1 11054 12685 D PTS system, maltose and glucose-specific IIABC component 11054..12685 Borrelia recurrentis A1 6919603 YP_002223639.1 CDS acyP NC_011252.1 12768 13052 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 12768..13052 Borrelia recurrentis A1 6919604 YP_002223640.1 CDS BRE_6012 NC_011252.1 13027 13518 R hypothetical protein complement(13027..13518) Borrelia recurrentis A1 6919605 YP_002223641.1 CDS resT NC_011252.1 13574 14932 R amidation motif (Prosite); telomere resolvase complement(13574..14932) Borrelia recurrentis A1 6919606 YP_002223642.1 CDS BRE_6014 NC_011252.1 15020 15661 R Probable lipoprotein (SpLip); hypothetical protein complement(15020..15661) Borrelia recurrentis A1 6919607 YP_002223643.1 CDS BRE_6015 NC_011252.1 15925 16863 D hypothetical protein 15925..16863 Borrelia recurrentis A1 6919608 YP_002223644.1 CDS ppap1 NC_011252.1 16886 17446 D plasmid partitioning associated protein-1 16886..17446 Borrelia recurrentis A1 6919609 YP_002223645.1 CDS pf32 NC_011252.1 17422 18186 D PF32 plasmid partition protein 17422..18186 Borrelia recurrentis A1 6919610 YP_002223646.1 CDS pf49 NC_011252.1 18242 18796 D PF49 plasmid partition protein 18242..18796 Borrelia recurrentis A1 6919611 YP_002223647.1 CDS BRE_6019 NC_011252.1 19198 19737 R Probable lipoprotein (SpLip); hypothetical protein complement(19198..19737) Borrelia recurrentis A1 6919612 YP_002223648.1 CDS vlp-b NC_011252.1 20295 21386 D Probable lipoprotein (SpLip); vlp protein, beta subfamily 20295..21386 Borrelia recurrentis A1 6919613 YP_002223649.1 CDS BRE_6021 NC_011252.1 22154 22582 R family 88-like protein complement(22154..22582) Borrelia recurrentis A1 6919614 YP_002223650.1 CDS bdr_1 NC_011253.1 375 884 R BdrQ-like protein complement(375..884) Borrelia recurrentis A1 6919646 YP_002223651.1 CDS BRE_5002 NC_011253.1 1164 1406 R hypothetical protein complement(1164..1406) Borrelia recurrentis A1 6919617 YP_002223652.1 CDS BRE_5003 NC_011253.1 1694 1999 R hypothetical protein complement(1694..1999) Borrelia recurrentis A1 6919618 YP_002223653.1 CDS BRE_5009 NC_011253.1 8521 9198 D hypothetical protein 8521..9198 Borrelia recurrentis A1 6919624 YP_002223654.1 CDS ppap1 NC_011253.1 9182 9784 D plasmid partitioning associated protein-1 9182..9784 Borrelia recurrentis A1 6919625 YP_002223655.1 CDS pf32 NC_011253.1 9760 10512 D PF32 plasmid partition protein 9760..10512 Borrelia recurrentis A1 6919626 YP_002223656.1 CDS pf49 NC_011253.1 10535 11134 D PF49 plasmid partition protein 10535..11134 Borrelia recurrentis A1 6919627 YP_002223657.1 CDS BRE_5014 NC_011253.1 13336 14223 D Probable lipoprotein (SpLip); putative lipoprotein 13336..14223 Borrelia recurrentis A1 6919629 YP_002223658.1 CDS BRE_5015 NC_011253.1 14439 14969 R Probable lipoprotein (SpLip); putative lipoprotein complement(14439..14969) Borrelia recurrentis A1 6919630 YP_002223659.1 CDS BRE_5016 NC_011253.1 15782 16375 D hypothetical protein 15782..16375 Borrelia recurrentis A1 6919631 YP_002223660.1 CDS vlp-d_1 NC_011253.1 17194 18240 D Probable lipoprotein (SpLip); vlp protein, delta subfamily 17194..18240 Borrelia recurrentis A1 6919633 YP_002223661.1 CDS BRE_5020 NC_011253.1 20211 20918 R Probable lipoprotein (SpLip); ORFk-like protein, lipoprotein complement(20211..20918) Borrelia recurrentis A1 6919635 YP_002223662.1 CDS bdr_2 NC_011253.1 22497 23315 D bdr proitein 22497..23315 Borrelia recurrentis A1 6919638 YP_002223663.1 CDS bdr_3 NC_011253.1 25763 26233 D bdr proitein 25763..26233 Borrelia recurrentis A1 6919640 YP_002223664.1 CDS vsp_1 NC_011253.1 27849 28460 D vsp protein 27849..28460 Borrelia recurrentis A1 6919642 YP_002223665.1 CDS vlp-d_2 NC_011253.1 29972 31084 D vlp protein, delta subfamily 29972..31084 Borrelia recurrentis A1 6919644 YP_002223666.1 CDS vsp_2 NC_011253.1 31362 31943 D vsp protein 31362..31943 Borrelia recurrentis A1 6919645 YP_002223687.1 CDS BRE_4002 NC_011255.1 1496 1993 R BBK32-like protein complement(1496..1993) Borrelia recurrentis A1 6919648 YP_002223688.1 CDS vlp_1 NC_011255.1 3385 4521 R vlp protein complement(3385..4521) Borrelia recurrentis A1 6919649 YP_002223689.1 CDS bdr_1 NC_011255.1 6301 6993 R bdr proitein complement(6301..6993) Borrelia recurrentis A1 6919651 YP_002223690.1 CDS BRE_4008 NC_011255.1 8903 9598 D ORFk-like protein 8903..9598 Borrelia recurrentis A1 6919654 YP_002223691.1 CDS BRE_4009 NC_011255.1 9763 10272 D Probable lipoprotein (SpLip); MlpL-like protein; lipoprotein 9763..10272 Borrelia recurrentis A1 6919655 YP_002223692.1 CDS BRE_4016 NC_011255.1 15721 16425 D hypothetical protein 15721..16425 Borrelia recurrentis A1 6919662 YP_002223693.1 CDS ppap1 NC_011255.1 16454 17014 D plasmid partitioning associated protein-1 16454..17014 Borrelia recurrentis A1 6919663 YP_002223694.1 CDS pf32 NC_011255.1 16990 17739 D PF32 plasmid partition protein 16990..17739 Borrelia recurrentis A1 6919664 YP_002223695.1 CDS pf49 NC_011255.1 17796 18371 D PF49 plasmid partition protein 17796..18371 Borrelia recurrentis A1 6919665 YP_002223696.1 CDS BRE_4024 NC_011255.1 22583 23014 R MlpL-like protein complement(22583..23014) Borrelia recurrentis A1 6919670 YP_002223697.1 CDS BRE_4025 NC_011255.1 24060 24599 D family 115-like protein 24060..24599 Borrelia recurrentis A1 6919671 YP_002223698.1 CDS bdr_2 NC_011255.1 26002 26475 D bdr proitein 26002..26475 Borrelia recurrentis A1 6919673 YP_002223699.1 CDS vsp NC_011255.1 28035 28739 D vsp protein 28035..28739 Borrelia recurrentis A1 6919676 YP_002223700.1 CDS vlp_2 NC_011255.1 30872 32008 D vlp protein 30872..32008 Borrelia recurrentis A1 6919679 YP_002223701.1 CDS BRE_4034 NC_011255.1 33400 34647 D antigenic protein P35 33400..34647 Borrelia recurrentis A1 6919680 YP_002223768.1 CDS BRE_3002 NC_011258.1 1073 1924 D antigen P35-like protein 1073..1924 Borrelia recurrentis A1 6919683 YP_002223769.1 CDS BRE_3003 NC_011258.1 2333 3325 R Probable lipoprotein (SpLip); putative lipoprotein complement(2333..3325) Borrelia recurrentis A1 6919684 YP_002223770.1 CDS thyX NC_011258.1 6191 7024 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(6191..7024) Borrelia recurrentis A1 6919686 YP_002223771.1 CDS BRE_3006 NC_011258.1 7263 8027 R hypothetical protein complement(7263..8027) Borrelia recurrentis A1 6919687 YP_002223772.1 CDS BRE_3007 NC_011258.1 8318 9274 D Probable lipoprotein (SpLip); BBK01-like protein 8318..9274 Borrelia recurrentis A1 6919688 YP_002223773.1 CDS BRE_3008 NC_011258.1 9822 10415 D Probable lipoprotein (SpLip); hypothetical protein 9822..10415 Borrelia recurrentis A1 6919689 YP_002223774.1 CDS BRE_3009 NC_011258.1 10546 11742 D Probable lipoprotein (SpLip); immunogenic protein P35 10546..11742 Borrelia recurrentis A1 6919690 YP_002223775.1 CDS vlp-d_1 NC_011258.1 13171 14163 R vlp protein, delta subfamily complement(13171..14163) Borrelia recurrentis A1 6919692 YP_002223776.1 CDS vlp-c NC_011258.1 14770 15795 R vlp protein, gamma subfamily complement(14770..15795) Borrelia recurrentis A1 6919693 YP_002223777.1 CDS bdr NC_011258.1 16063 16653 D bdr proitein 16063..16653 Borrelia recurrentis A1 6919694 YP_002223778.1 CDS pf32 NC_011258.1 18123 18884 R PF32 plasmid partition protein complement(18123..18884) Borrelia recurrentis A1 6919696 YP_002223779.1 CDS ppap1 NC_011258.1 18860 19435 R plasmid partitioning associated protein-1 complement(18860..19435) Borrelia recurrentis A1 6919697 YP_002223780.1 CDS BRE_3017 NC_011258.1 19508 20191 R hypothetical protein complement(19508..20191) Borrelia recurrentis A1 6919698 YP_002223781.1 CDS vlp-a NC_011258.1 21328 22302 D vlp protein, alpha subfamily 21328..22302 Borrelia recurrentis A1 6919699 YP_002223782.1 CDS vsp_1 NC_011258.1 22933 23577 D Probable lipoprotein (SpLip); vsp protein 22933..23577 Borrelia recurrentis A1 6919700 YP_002223783.1 CDS vlp-d_2 NC_011258.1 23823 24917 D vlp protein, delta subfamily 23823..24917 Borrelia recurrentis A1 6919701 YP_002223784.1 CDS vsp_2 NC_011258.1 25266 25847 D vsp protein 25266..25847 Borrelia recurrentis A1 6919702 YP_002223785.1 CDS vlp-d_3 NC_011258.1 27359 28471 D vlp protein, delta subfamily 27359..28471 Borrelia recurrentis A1 6919704 YP_002223786.1 CDS vsp_3 NC_011258.1 28749 29330 D vsp protein 28749..29330 Borrelia recurrentis A1 6919705 YP_002223799.1 CDS bdr_1 NC_011260.1 850 1386 R bdr proitein complement(850..1386) Borrelia recurrentis A1 6919714 YP_002223800.1 CDS mlpA NC_011260.1 4153 4662 D Probable lipoprotein (SpLip); lipoprotein 4153..4662 Borrelia recurrentis A1 6919717 YP_002223801.1 CDS BRE_2006 NC_011260.1 4952 5638 D hypothetical protein 4952..5638 Borrelia recurrentis A1 6919718 YP_002223802.1 CDS ppap1_1 NC_011260.1 5642 6217 D plasmid partitioning associated protein-1 5642..6217 Borrelia recurrentis A1 6919719 YP_002223803.1 CDS pf32_1 NC_011260.1 6193 6945 D PF32 plasmid partition protein 6193..6945 Borrelia recurrentis A1 6919720 YP_002223804.1 CDS pf49_1 NC_011260.1 6985 7557 D PF49 plasmid partition protein 6985..7557 Borrelia recurrentis A1 6919721 YP_002223805.1 CDS vsp_1 NC_011260.1 8261 8842 D vsp protein 8261..8842 Borrelia recurrentis A1 6919722 YP_002223806.1 CDS bdr_2 NC_011260.1 10520 11002 R bdr proitein complement(10520..11002) Borrelia recurrentis A1 6919725 YP_002223807.1 CDS BRE_2015 NC_011260.1 12372 12911 R family 115-like protein complement(12372..12911) Borrelia recurrentis A1 6919727 YP_002223808.1 CDS pf49_2 NC_011260.1 15588 16121 R PF-49 plasmid partition protein complement(15588..16121) Borrelia recurrentis A1 6919731 YP_002223809.1 CDS pf32_2 NC_011260.1 16163 16906 R PF32 plasmid partition protein complement(16163..16906) Borrelia recurrentis A1 6919732 YP_002223810.1 CDS ppap1_2 NC_011260.1 16882 17442 R plasmid partitioning associated protein-1 complement(16882..17442) Borrelia recurrentis A1 6919733 YP_002223811.1 CDS ppap2 NC_011260.1 17452 18582 R plasmid partioning associated protein 2 complement(17452..18582) Borrelia recurrentis A1 6919734 YP_002223812.1 CDS bppC_2 NC_011260.1 20104 20856 R BppC complement(20104..20856) Borrelia recurrentis A1 6919738 YP_002223813.1 CDS BRE_2027 NC_011260.1 21288 21707 R Probable lipoprotein (SpLip); MlpL-like protein; lipoprotein complement(21288..21707) Borrelia recurrentis A1 6919739 YP_002223814.1 CDS bdr_3 NC_011260.1 24197 24754 D bdr proitein 24197..24754 Borrelia recurrentis A1 6919742 YP_002223815.1 CDS vlp-d_1 NC_011260.1 28788 29780 R vlp protein, delta subfamily complement(28788..29780) Borrelia recurrentis A1 6919748 YP_002223816.1 CDS vlp-c NC_011260.1 30387 31412 R vlp protein, gamma subfamily complement(30387..31412) Borrelia recurrentis A1 6919749 YP_002223817.1 CDS bdr_4 NC_011260.1 31680 32270 D bdr proitein 31680..32270 Borrelia recurrentis A1 6919750 YP_002223818.1 CDS pf32_3 NC_011260.1 33740 34501 R PF32 plasmid partition protein complement(33740..34501) Borrelia recurrentis A1 6919752 YP_002223819.1 CDS ppap1_3 NC_011260.1 34477 35052 R plasmid partitioning associated protein-1 complement(34477..35052) Borrelia recurrentis A1 6919753 YP_002223820.1 CDS BRE_2042 NC_011260.1 35125 35808 R hypothetical protein complement(35125..35808) Borrelia recurrentis A1 6919754 YP_002223821.1 CDS vlp-a NC_011260.1 36945 37919 D vlp protein, alpha subfamily 36945..37919 Borrelia recurrentis A1 6919755 YP_002223822.1 CDS vsp_2 NC_011260.1 38550 39194 D Probable lipoprotein (SpLip); vsp protein 38550..39194 Borrelia recurrentis A1 6919756 YP_002223823.1 CDS vlp-d_2 NC_011260.1 39440 40534 D vlp protein, delta subfamily 39440..40534 Borrelia recurrentis A1 6919757 YP_002223824.1 CDS vsp_3 NC_011260.1 40852 41463 D vsp protein 40852..41463 Borrelia recurrentis A1 6919758 YP_002223825.1 CDS vlp-d_3 NC_011260.1 42975 44087 D vlp protein, delta subfamily 42975..44087 Borrelia recurrentis A1 6919760 YP_002223826.1 CDS vsp_4 NC_011260.1 44365 44946 D vsp protein 44365..44946 Borrelia recurrentis A1 6919761 YP_002223881.1 CDS pf49 NC_011263.1 166 681 R PF49 plasmid partition protein complement(166..681) Borrelia recurrentis A1 6919773 YP_002223882.1 CDS pf32 NC_011263.1 744 1505 R PF32 plasmid partition protein complement(744..1505) Borrelia recurrentis A1 6919770 YP_002223883.1 CDS BRE_7003 NC_011263.1 2242 2766 D hypothetical protein 2242..2766 Borrelia recurrentis A1 6919771 BRE_51 tRNA BRE_51 NC_011244.1 58407 58478 D tRNA-Gly 58407..58478 Borrelia recurrentis A1 6918676 BRE_199 tRNA BRE_199 NC_011244.1 213692 213764 D tRNA-Cys 213692..213764 Borrelia recurrentis A1 6919405 BRE_203 tRNA BRE_203 NC_011244.1 217548 217620 D tRNA-Phe 217548..217620 Borrelia recurrentis A1 6919409 BRE_212 tRNA BRE_212 NC_011244.1 230154 230227 D tRNA-Met 230154..230227 Borrelia recurrentis A1 6919418 BRE_251 tRNA BRE_251 NC_011244.1 270650 270733 D tRNA-Leu 270650..270733 Borrelia recurrentis A1 6918793 BRE_394 tRNA BRE_394 NC_011244.1 428485 428556 R tRNA-Trp complement(428485..428556) Borrelia recurrentis A1 6918936 BRE_396 tRNA BRE_396 NC_011244.1 428770 428841 R tRNA-Thr complement(428770..428841) Borrelia recurrentis A1 6918938 BRE_426 tRNA BRE_426 NC_011244.1 463937 464010 D tRNA-Ile 463937..464010 Borrelia recurrentis A1 6918968 BRE_427 tRNA BRE_427 NC_011244.1 464334 464407 R tRNA-Ala complement(464334..464407) Borrelia recurrentis A1 6918969 BRE_461 tRNA BRE_461 NC_011244.1 500099 500188 D tRNA-Ser 500099..500188 Borrelia recurrentis A1 6919003 BRE_462 tRNA BRE_462 NC_011244.1 500254 500339 D tRNA-Ser 500254..500339 Borrelia recurrentis A1 6919004 BRE_464 tRNA BRE_464 NC_011244.1 501206 501279 D tRNA-Arg 501206..501279 Borrelia recurrentis A1 6919006 BRE_465 tRNA BRE_465 NC_011244.1 501295 501381 D tRNA-Ser 501295..501381 Borrelia recurrentis A1 6919007 BRE_538 tRNA BRE_538 NC_011244.1 568243 568315 R tRNA-Glu complement(568243..568315) Borrelia recurrentis A1 6919080 BRE_539 tRNA BRE_539 NC_011244.1 568323 568395 R tRNA-Lys complement(568323..568395) Borrelia recurrentis A1 6919081 BRE_540 tRNA BRE_540 NC_011244.1 568487 568560 R tRNA-Lys complement(568487..568560) Borrelia recurrentis A1 6919082 BRE_577 tRNA BRE_577 NC_011244.1 608047 608133 R tRNA-Leu complement(608047..608133) Borrelia recurrentis A1 6919119 BRE_612 tRNA BRE_612 NC_011244.1 655519 655592 D tRNA-His 655519..655592 Borrelia recurrentis A1 6919154 BRE_613 tRNA BRE_613 NC_011244.1 655611 655684 D tRNA-Arg 655611..655684 Borrelia recurrentis A1 6919155 BRE_614 tRNA BRE_614 NC_011244.1 655742 655822 D tRNA-Leu 655742..655822 Borrelia recurrentis A1 6919156 BRE_615 tRNA BRE_615 NC_011244.1 655828 655898 D tRNA-Gly 655828..655898 Borrelia recurrentis A1 6919157 BRE_621 tRNA BRE_621 NC_011244.1 662442 662515 R tRNA-Met complement(662442..662515) Borrelia recurrentis A1 6919163 BRE_627 tRNA BRE_627 NC_011244.1 667774 667847 D tRNA-Met 667774..667847 Borrelia recurrentis A1 6919169 BRE_633 tRNA BRE_633 NC_011244.1 676289 676360 D tRNA-Asn 676289..676360 Borrelia recurrentis A1 6919175 BRE_638 tRNA BRE_638 NC_011244.1 682047 682120 R tRNA-Asp complement(682047..682120) Borrelia recurrentis A1 6919180 BRE_695 tRNA BRE_695 NC_011244.1 748772 748845 R tRNA-Val complement(748772..748845) Borrelia recurrentis A1 6919237 BRE_714 tRNA BRE_714 NC_011244.1 763746 763820 D tRNA-Thr 763746..763820 Borrelia recurrentis A1 6919256 BRE_715 tRNA BRE_715 NC_011244.1 763825 763906 D tRNA-Tyr 763825..763906 Borrelia recurrentis A1 6919257 BRE_751 tRNA BRE_751 NC_011244.1 810471 810543 R tRNA-Pro complement(810471..810543) Borrelia recurrentis A1 6919293 BRE_752 tRNA BRE_752 NC_011244.1 810553 810626 R tRNA-Arg complement(810553..810626) Borrelia recurrentis A1 6919294 BRE_766 tRNA BRE_766 NC_011244.1 823910 823993 D tRNA-Leu 823910..823993 Borrelia recurrentis A1 6919308 BRE_794 tRNA BRE_794 NC_011244.1 845219 845290 D tRNA-Gln 845219..845290 Borrelia recurrentis A1 6919336 BRE_419 rRNA BRE_419 NC_011244.1 455827 455939 R 5S ribosomal RNA complement(455827..455939) Borrelia recurrentis A1 6918961 BRE_420 rRNA BRE_420 NC_011244.1 455959 458902 R 23S ribosomal RNA complement(455959..458902) Borrelia recurrentis A1 6918962 BRE_428 rRNA BRE_428 NC_011244.1 464493 466031 R 16S ribosomal RNA complement(464493..466031) Borrelia recurrentis A1 6918970