-- dump date 20140619_004839 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002222487.1 203287472 6918628 complement(2174..3295) 1 NC_011244.1 vlp protein, alpha subfamily 3295 vlp-a 6918628 vlp-a Borrelia recurrentis A1 vlp protein, alpha subfamily YP_002222487.1 2174 R 412418 CDS YP_002222488.1 203287473 6918629 complement(6895..7989) 1 NC_011244.1 vlp protein, delta subfamily 7989 vlp-d 6918629 vlp-d Borrelia recurrentis A1 vlp protein, delta subfamily YP_002222488.1 6895 R 412418 CDS YP_002222489.1 203287474 6918631 12958..13524 1 NC_011244.1 hypothetical protein 13524 6918631 BRE_6 Borrelia recurrentis A1 hypothetical protein YP_002222489.1 12958 D 412418 CDS YP_002222490.1 203287475 6918632 complement(13640..14737) 1 NC_011244.1 beta-N-acetylhexosaminidase, putative 14737 6918632 BRE_7 Borrelia recurrentis A1 beta-N-acetylhexosaminidase, putative YP_002222490.1 13640 R 412418 CDS YP_002222491.1 203287476 6918633 complement(14670..16163) 1 NC_011244.1 2 amidation motifs (Prosite); hypothetical protein 16163 6918633 BRE_8 Borrelia recurrentis A1 hypothetical protein YP_002222491.1 14670 R 412418 CDS YP_002222492.1 203287477 6918634 16218..18008 1 NC_011244.1 phosphoglucomutase 18008 femD 6918634 femD Borrelia recurrentis A1 phosphoglucomutase YP_002222492.1 16218 D 412418 CDS YP_002222493.1 203287478 6918635 complement(18085..19137) 1 NC_011244.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 19137 trsA 6918635 trsA Borrelia recurrentis A1 tryptophanyl-tRNA synthetase YP_002222493.1 18085 R 412418 CDS YP_002222494.1 203287479 6918636 complement(19134..20225) 1 NC_011244.1 hypothetical protein 20225 6918636 BRE_11 Borrelia recurrentis A1 hypothetical protein YP_002222494.1 19134 R 412418 CDS YP_002222495.1 203287480 6918637 complement(20338..21195) 1 NC_011244.1 hypothetical protein 21195 6918637 BRE_12 Borrelia recurrentis A1 hypothetical protein YP_002222495.1 20338 R 412418 CDS YP_002222496.1 203287481 6918638 21315..22091 1 NC_011244.1 LEUCINE_ZIPPER motif (Prosite); hypothetical protein 22091 6918638 BRE_13 Borrelia recurrentis A1 hypothetical protein YP_002222496.1 21315 D 412418 CDS YP_002222497.1 203287482 6918639 22095..23087 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 23087 6918639 BRE_14 Borrelia recurrentis A1 hypothetical protein YP_002222497.1 22095 D 412418 CDS YP_002222498.1 203287483 6918640 23080..23469 1 NC_011244.1 holo-acyl-carrier protein synthase 23469 6918640 BRE_15 Borrelia recurrentis A1 holo-acyl-carrier protein synthase YP_002222498.1 23080 D 412418 CDS YP_002222499.1 203287484 6918641 23473..24321 1 NC_011244.1 hypothetical protein 24321 6918641 BRE_16 Borrelia recurrentis A1 hypothetical protein YP_002222499.1 23473 D 412418 CDS YP_002222500.1 203287485 6918642 24322..25059 1 NC_011244.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 25059 truA 6918642 truA Borrelia recurrentis A1 tRNA pseudouridine synthase A YP_002222500.1 24322 D 412418 CDS YP_002222501.1 203287486 6918643 25052..25621 1 NC_011244.1 hypothetical protein 25621 6918643 BRE_18 Borrelia recurrentis A1 hypothetical protein YP_002222501.1 25052 D 412418 CDS YP_002222502.1 203287487 6918644 25614..27590 1 NC_011244.1 primosomal protein N 27590 priA 6918644 priA Borrelia recurrentis A1 primosomal protein N YP_002222502.1 25614 D 412418 CDS YP_002222503.1 203287488 6918645 complement(27587..28207) 1 NC_011244.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 28207 udk 6918645 udk Borrelia recurrentis A1 uridine kinase YP_002222503.1 27587 R 412418 CDS YP_002222504.1 203287489 6918646 complement(28200..28589) 1 NC_011244.1 GlpE protein (GlpE) 28589 glpE 6918646 glpE Borrelia recurrentis A1 GlpE protein (GlpE) YP_002222504.1 28200 R 412418 CDS YP_002222505.1 203287490 6918647 28718..29683 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 29683 6918647 BRE_22 Borrelia recurrentis A1 hypothetical protein YP_002222505.1 28718 D 412418 CDS YP_002222506.1 203287491 6918648 complement(29680..30660) 1 NC_011244.1 ribosomal large subunit pseudouridine synthase D 30660 6918648 BRE_23 Borrelia recurrentis A1 ribosomal large subunit pseudouridine synthase D YP_002222506.1 29680 R 412418 CDS YP_002222507.1 203287492 6918649 complement(30661..31167) 1 NC_011244.1 hypothetical protein 31167 6918649 BRE_24 Borrelia recurrentis A1 hypothetical protein YP_002222507.1 30661 R 412418 CDS YP_002222508.1 203287493 6918650 complement(31175..32839) 1 NC_011244.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 32839 pfpB 6918650 pfpB Borrelia recurrentis A1 diphosphate--fructose-6-phosphate 1-phosphotransferase YP_002222508.1 31175 R 412418 CDS YP_002222509.1 203287494 6918651 complement(32909..33967) 1 NC_011244.1 S-adenosylmethionine-tRNA ribosyltransferase-isomerase (queuine synthetase) 33967 queA 6918651 queA Borrelia recurrentis A1 S-adenosylmethionine-tRNA ribosyltransferase-isomerase (queuine synthetase) YP_002222509.1 32909 R 412418 CDS YP_002222510.1 203287495 6918652 complement(33951..34973) 1 NC_011244.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 34973 ruvB 6918652 ruvB Borrelia recurrentis A1 Holliday junction DNA helicase RuvB YP_002222510.1 33951 R 412418 CDS YP_002222511.1 203287496 6918653 complement(35026..35616) 1 NC_011244.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 35616 ruvA 6918653 ruvA Borrelia recurrentis A1 Holliday junction DNA helicase RuvA YP_002222511.1 35026 R 412418 CDS YP_002222512.1 203287497 6918654 complement(35699..36430) 1 NC_011244.1 hypothetical protein 36430 6918654 BRE_29 Borrelia recurrentis A1 hypothetical protein YP_002222512.1 35699 R 412418 CDS YP_002222513.1 203287498 6918655 complement(36431..37372) 1 NC_011244.1 methylenetetrahydrofolate dehydrogenase 37372 folD 6918655 folD Borrelia recurrentis A1 methylenetetrahydrofolate dehydrogenase YP_002222513.1 36431 R 412418 CDS YP_002222514.1 203287499 6918656 37501..38136 1 NC_011244.1 MICROBODIES_CTER motif (Prosite); hypothetical protein 38136 6918656 BRE_31 Borrelia recurrentis A1 hypothetical protein YP_002222514.1 37501 D 412418 CDS YP_002222515.1 203287500 6918657 38144..39175 1 NC_011244.1 hypothetical protein 39175 6918657 BRE_32 Borrelia recurrentis A1 hypothetical protein YP_002222515.1 38144 D 412418 CDS YP_002222516.1 203287501 6918658 complement(39161..39592) 1 NC_011244.1 hypothetical protein 39592 6918658 BRE_33 Borrelia recurrentis A1 hypothetical protein YP_002222516.1 39161 R 412418 CDS YP_002222517.1 203287502 6918659 complement(39582..40217) 1 NC_011244.1 signal peptidase I 40217 lepB-1 6918659 lepB-1 Borrelia recurrentis A1 signal peptidase I YP_002222517.1 39582 R 412418 CDS YP_002222518.1 203287503 6918660 complement(40218..41198) 1 NC_011244.1 signal peptidase I 41198 lepB-2 6918660 lepB-2 Borrelia recurrentis A1 signal peptidase I YP_002222518.1 40218 R 412418 CDS YP_002222519.1 203287504 6918661 41400..42872 1 NC_011244.1 hypothetical protein 42872 6918661 BRE_36 Borrelia recurrentis A1 hypothetical protein YP_002222519.1 41400 D 412418 CDS YP_002222520.1 203287505 6918662 42875..43324 1 NC_011244.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 43324 smpB 6918662 smpB Borrelia recurrentis A1 SsrA-binding protein YP_002222520.1 42875 D 412418 CDS YP_002222521.1 203287506 6918663 complement(43481..44083) 1 NC_011244.1 hypothetical protein 44083 6918663 BRE_38 Borrelia recurrentis A1 hypothetical protein YP_002222521.1 43481 R 412418 CDS YP_002222522.1 203287507 6918664 complement(44104..45987) 1 NC_011244.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 45987 parC 6918664 parC Borrelia recurrentis A1 DNA topoisomerase IV subunit A YP_002222522.1 44104 R 412418 CDS YP_002222523.1 203287508 6918665 complement(45987..47783) 1 NC_011244.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 47783 parE 6918665 parE Borrelia recurrentis A1 DNA topoisomerase IV subunit B YP_002222523.1 45987 R 412418 CDS YP_002222524.1 203287509 6918666 complement(47795..48547) 1 NC_011244.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 48547 plsC 6918666 plsC Borrelia recurrentis A1 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002222524.1 47795 R 412418 CDS YP_002222525.1 203287510 6918667 complement(48555..50015) 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 50015 6918667 BRE_42 Borrelia recurrentis A1 putative lipoprotein YP_002222525.1 48555 R 412418 CDS YP_002222526.1 203287511 6918668 complement(50078..51586) 1 NC_011244.1 hypothetical protein 51586 6918668 BRE_43 Borrelia recurrentis A1 hypothetical protein YP_002222526.1 50078 R 412418 CDS YP_002222527.1 203287512 6918669 51775..52647 1 NC_011244.1 chemotaxis protein methyltransferase 52647 cheR-1 6918669 cheR-1 Borrelia recurrentis A1 chemotaxis protein methyltransferase YP_002222527.1 51775 D 412418 CDS YP_002222528.1 203287513 6918670 complement(52681..53358) 1 NC_011244.1 phosphate transport system regulatory protein 53358 phoU 6918670 phoU Borrelia recurrentis A1 phosphate transport system regulatory protein YP_002222528.1 52681 R 412418 CDS YP_002222529.1 203287514 6918671 complement(53365..54414) 1 NC_011244.1 hypothetical protein 54414 6918671 BRE_46 Borrelia recurrentis A1 hypothetical protein YP_002222529.1 53365 R 412418 CDS YP_002222530.1 203287515 6918672 complement(54411..54797) 1 NC_011244.1 hypothetical protein 54797 6918672 BRE_47 Borrelia recurrentis A1 hypothetical protein YP_002222530.1 54411 R 412418 CDS YP_002222531.1 203287516 6918673 complement(54825..57290) 1 NC_011244.1 ATP_GTP_A and LEUCINE_ZIPPER motif (Prosite); P115 protein 57290 6918673 BRE_48 Borrelia recurrentis A1 P115 protein YP_002222531.1 54825 R 412418 CDS YP_002222532.1 203287517 6918674 57348..57893 1 NC_011244.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 57893 rnhB 6918674 rnhB Borrelia recurrentis A1 ribonuclease HII YP_002222532.1 57348 D 412418 CDS YP_002222533.1 203287518 6918675 complement(57974..58267) 1 NC_011244.1 hypothetical protein 58267 6918675 BRE_50 Borrelia recurrentis A1 hypothetical protein YP_002222533.1 57974 R 412418 CDS YP_002222534.1 203287519 6918678 58999..59709 1 NC_011244.1 hypothetical protein 59709 6918678 BRE_53 Borrelia recurrentis A1 hypothetical protein YP_002222534.1 58999 D 412418 CDS YP_002222535.1 203287520 6918679 59754..60449 1 NC_011244.1 hypothetical protein 60449 6918679 BRE_54 Borrelia recurrentis A1 hypothetical protein YP_002222535.1 59754 D 412418 CDS YP_002222536.1 203287521 6918680 complement(60424..61080) 1 NC_011244.1 spoU protein 61080 spoU 6918680 spoU Borrelia recurrentis A1 spoU protein YP_002222536.1 60424 R 412418 CDS YP_002222537.1 203287522 6918681 61174..61845 1 NC_011244.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 61845 ung 6918681 ung Borrelia recurrentis A1 uracil-DNA glycosylase YP_002222537.1 61174 D 412418 CDS YP_002222538.1 203287523 6918682 complement(61903..62265) 1 NC_011244.1 preprotein translocase subunit SecG 62265 secG 6918682 secG Borrelia recurrentis A1 preprotein translocase subunit SecG YP_002222538.1 61903 R 412418 CDS YP_002222539.1 203287524 6918683 complement(62271..63035) 1 NC_011244.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 63035 tpiA 6918683 tpiA Borrelia recurrentis A1 triosephosphate isomerase YP_002222539.1 62271 R 412418 CDS YP_002222540.1 203287525 6918684 complement(63037..64215) 1 NC_011244.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 64215 pgk 6918684 pgk Borrelia recurrentis A1 phosphoglycerate kinase YP_002222540.1 63037 R 412418 CDS YP_002222541.1 203287526 6918685 complement(64245..65252) 1 NC_011244.1 glyceraldehyde 3-phosphate dehydrogenase (GAPDH) 65252 gap 6918685 gap Borrelia recurrentis A1 glyceraldehyde 3-phosphate dehydrogenase (GAPDH) YP_002222541.1 64245 R 412418 CDS YP_002222542.1 203287527 6918686 complement(65325..67310) 1 NC_011244.1 hypothetical protein 67310 6918686 BRE_61 Borrelia recurrentis A1 hypothetical protein YP_002222542.1 65325 R 412418 CDS YP_002222543.1 203287528 6918687 complement(67307..68086) 1 NC_011244.1 hemolysin 68086 tlyC 6918687 tlyC Borrelia recurrentis A1 hemolysin YP_002222543.1 67307 R 412418 CDS YP_002222544.1 203287529 6918688 complement(68083..68529) 1 NC_011244.1 UPF0054 motif (Prosite); putative metalloprotease 68529 6918688 BRE_63 Borrelia recurrentis A1 putative metalloprotease YP_002222544.1 68083 R 412418 CDS YP_002222545.1 203287530 6918689 complement(68616..68969) 1 NC_011244.1 thioredoxin 68969 trxA 6918689 trxA Borrelia recurrentis A1 thioredoxin YP_002222545.1 68616 R 412418 CDS YP_002222546.1 203287531 6918690 69047..69766 1 NC_011244.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 69766 6918690 BRE_65 Borrelia recurrentis A1 16S ribosomal RNA methyltransferase RsmE YP_002222546.1 69047 D 412418 CDS YP_002222547.1 203287532 6918691 complement(69840..70895) 1 NC_011244.1 hypothetical protein 70895 6918691 BRE_66 Borrelia recurrentis A1 hypothetical protein YP_002222547.1 69840 R 412418 CDS YP_002222548.1 203287533 6918692 complement(70923..71852) 1 NC_011244.1 methionyl-tRNA formyltransferase 71852 fmt 6918692 fmt Borrelia recurrentis A1 methionyl-tRNA formyltransferase YP_002222548.1 70923 R 412418 CDS YP_002222549.1 203287534 6918693 complement(71849..72346) 1 NC_011244.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 72346 def 6918693 def Borrelia recurrentis A1 peptide deformylase YP_002222549.1 71849 R 412418 CDS YP_002222550.1 203287535 6918694 complement(72374..73069) 1 NC_011244.1 hypothetical protein 73069 6918694 BRE_69 Borrelia recurrentis A1 hypothetical protein YP_002222550.1 72374 R 412418 CDS YP_002222551.1 203287536 6918695 complement(73066..74844) 1 NC_011244.1 MICROBODIES_CTER and DDC_GAD_HDC_YDC motifs (Prosite); peptidase, putative 74844 6918695 BRE_70 Borrelia recurrentis A1 peptidase, putative YP_002222551.1 73066 R 412418 CDS YP_002222552.1 203287537 6918696 74968..75861 1 NC_011244.1 COF_1 and COF_2 motifs (Prosite); hypothetical protein 75861 6918696 BRE_71 Borrelia recurrentis A1 hypothetical protein YP_002222552.1 74968 D 412418 CDS YP_002222553.1 203287538 6918697 75875..77113 1 NC_011244.1 aminopeptidase II 77113 6918697 BRE_72 Borrelia recurrentis A1 aminopeptidase II YP_002222553.1 75875 D 412418 CDS YP_002222554.1 203287539 6918698 77138..77611 1 NC_011244.1 hypothetical protein 77611 6918698 BRE_73 Borrelia recurrentis A1 hypothetical protein YP_002222554.1 77138 D 412418 CDS YP_002222555.1 203287540 6918699 77639..79105 1 NC_011244.1 Probable lipoprotein (SpLip); hypothetical protein 79105 6918699 BRE_74 Borrelia recurrentis A1 hypothetical protein YP_002222555.1 77639 D 412418 CDS YP_002222556.1 203287541 6918700 79105..81420 1 NC_011244.1 hypothetical protein 81420 6918700 BRE_75 Borrelia recurrentis A1 hypothetical protein YP_002222556.1 79105 D 412418 CDS YP_002222557.1 203287542 6918701 81417..81989 1 NC_011244.1 hypothetical protein 81989 6918701 BRE_76 Borrelia recurrentis A1 hypothetical protein YP_002222557.1 81417 D 412418 CDS YP_002222558.1 203287543 6918702 82023..83066 1 NC_011244.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 83066 prfB 6918702 prfB Borrelia recurrentis A1 peptide chain release factor 2 YP_002222558.1 82023 D 412418 CDS YP_002222559.1 203287544 6918703 83048..84457 1 NC_011244.1 hypothetical protein 84457 6918703 BRE_78 Borrelia recurrentis A1 hypothetical protein YP_002222559.1 83048 D 412418 CDS YP_002222560.1 203287545 6918704 84509..85354 1 NC_011244.1 signal recognition particle-docking protein 85354 ftsY 6918704 ftsY Borrelia recurrentis A1 signal recognition particle-docking protein YP_002222560.1 84509 D 412418 CDS YP_002222561.1 203287546 6918705 85351..86406 1 NC_011244.1 hypothetical protein 86406 6918705 BRE_80 Borrelia recurrentis A1 hypothetical protein YP_002222561.1 85351 D 412418 CDS YP_002222562.1 203287547 6918706 86393..87643 1 NC_011244.1 lipoprotein releasing system, permease protein, putative 87643 6918706 BRE_81 Borrelia recurrentis A1 lipoprotein releasing system, permease protein, putative YP_002222562.1 86393 D 412418 CDS YP_002222563.1 203287548 6918707 87644..88333 1 NC_011244.1 ABC transporter, ATP-binding protein 88333 6918707 BRE_82 Borrelia recurrentis A1 ABC transporter, ATP-binding protein YP_002222563.1 87644 D 412418 CDS YP_002222564.1 203287549 6918708 88330..89580 1 NC_011244.1 ABC transporter, permease protein 89580 6918708 BRE_83 Borrelia recurrentis A1 ABC transporter, permease protein YP_002222564.1 88330 D 412418 CDS YP_002222565.1 203287550 6918709 complement(89601..90887) 1 NC_011244.1 hypothetical protein 90887 6918709 BRE_84 Borrelia recurrentis A1 hypothetical protein YP_002222565.1 89601 R 412418 CDS YP_002222566.1 203287551 6918710 complement(90880..91197) 1 NC_011244.1 hypothetical protein 91197 6918710 BRE_85 Borrelia recurrentis A1 hypothetical protein YP_002222566.1 90880 R 412418 CDS YP_002222567.1 203287552 6918711 91362..92630 1 NC_011244.1 nifS protein 92630 nifS 6918711 nifS Borrelia recurrentis A1 nifS protein YP_002222567.1 91362 D 412418 CDS YP_002222568.1 203287553 6918712 92776..93171 1 NC_011244.1 hypothetical protein 93171 6918712 BRE_87 Borrelia recurrentis A1 hypothetical protein YP_002222568.1 92776 D 412418 CDS YP_002222569.1 203287554 6918713 93126..94733 1 NC_011244.1 ATP_GTP_A motif (Prosite); magnesium chelatase family protein 94733 6918713 BRE_88 Borrelia recurrentis A1 magnesium chelatase family protein YP_002222569.1 93126 D 412418 CDS YP_002222570.1 203287555 6918714 complement(94756..95718) 1 NC_011244.1 L-lactate dehydrogenase 95718 ldh 6918714 ldh Borrelia recurrentis A1 L-lactate dehydrogenase YP_002222570.1 94756 R 412418 CDS YP_002222571.1 203287556 6918715 complement(95896..97563) 1 NC_011244.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 97563 lepA 6918715 lepA Borrelia recurrentis A1 GTP-binding protein LepA YP_002222571.1 95896 R 412418 CDS YP_002222572.1 203287557 6918716 complement(97742..98746) 1 NC_011244.1 RGD motif (Prosite); hypothetical protein 98746 6918716 BRE_91 Borrelia recurrentis A1 hypothetical protein YP_002222572.1 97742 R 412418 CDS YP_002222573.1 203287558 6918717 complement(98783..99217) 1 NC_011244.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 99217 atpK 6918717 atpK Borrelia recurrentis A1 V-type ATP synthase subunit K YP_002222573.1 98783 R 412418 CDS YP_002222574.1 203287559 6918718 complement(99237..101072) 1 NC_011244.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 101072 atpI 6918718 atpI Borrelia recurrentis A1 V-type ATP synthase subunit I YP_002222574.1 99237 R 412418 CDS YP_002222575.1 203287560 6918719 complement(101077..101673) 1 NC_011244.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 101673 atpD 6918719 atpD Borrelia recurrentis A1 V-type ATP synthase subunit D YP_002222575.1 101077 R 412418 CDS YP_002222576.1 203287561 6918720 complement(101676..102983) 1 NC_011244.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 102983 atpB 6918720 atpB Borrelia recurrentis A1 V-type ATP synthase subunit B YP_002222576.1 101676 R 412418 CDS YP_002222577.1 203287562 6918721 complement(102987..104717) 1 NC_011244.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 104717 atpA 6918721 atpA Borrelia recurrentis A1 V-type ATP synthase subunit A YP_002222577.1 102987 R 412418 CDS YP_002222578.1 203287563 6918722 complement(104728..105273) 1 NC_011244.1 uncharacterized conserved motif-containing protein 105273 6918722 BRE_97 Borrelia recurrentis A1 uncharacterized conserved motif-containing protein YP_002222578.1 104728 R 412418 CDS YP_002222579.1 203287564 6918723 complement(105283..105879) 1 NC_011244.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E 105879 atpE 6918723 atpE Borrelia recurrentis A1 V-type ATP synthase subunit E YP_002222579.1 105283 R 412418 CDS YP_002222580.1 203287565 6918724 complement(105986..106381) 1 NC_011244.1 hypothetical protein 106381 6918724 BRE_99 Borrelia recurrentis A1 hypothetical protein YP_002222580.1 105986 R 412418 CDS YP_002222581.1 203287566 6918726 complement(108689..109630) 1 NC_011244.1 ATP_GTP_A motif (Prosite); hypothetical protein 109630 6918726 BRE_101 Borrelia recurrentis A1 hypothetical protein YP_002222581.1 108689 R 412418 CDS YP_002222582.1 203287567 6918727 complement(109627..110391) 1 NC_011244.1 glutamate racemase 110391 murI 6918727 murI Borrelia recurrentis A1 glutamate racemase YP_002222582.1 109627 R 412418 CDS YP_002222583.1 203287568 6918728 110510..111895 1 NC_011244.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 111895 asnC 6918728 asnC Borrelia recurrentis A1 asparaginyl-tRNA synthetase YP_002222583.1 110510 D 412418 CDS YP_002222584.1 203287569 6918729 111923..112471 1 NC_011244.1 hypothetical protein 112471 6918729 BRE_104 Borrelia recurrentis A1 hypothetical protein YP_002222584.1 111923 D 412418 CDS YP_002222585.1 203287570 6918730 complement(112474..113064) 1 NC_011244.1 predicted phosphoribosyltransferases; hypothetical protein 113064 6918730 BRE_105 Borrelia recurrentis A1 hypothetical protein YP_002222585.1 112474 R 412418 CDS YP_002222586.1 203287571 6918731 complement(113414..114871) 1 NC_011244.1 periplasmic serine protease DO 114871 htrA 6918731 htrA Borrelia recurrentis A1 periplasmic serine protease DO YP_002222586.1 113414 R 412418 CDS YP_002222587.1 203287572 6918732 complement(114912..115664) 1 NC_011244.1 methionine aminopeptidase 115664 map 6918732 map Borrelia recurrentis A1 methionine aminopeptidase YP_002222587.1 114912 R 412418 CDS YP_002222588.1 203287573 6918733 complement(115669..117318) 1 NC_011244.1 hypothetical protein 117318 6918733 BRE_108 Borrelia recurrentis A1 hypothetical protein YP_002222588.1 115669 R 412418 CDS YP_002222589.1 203287574 6918734 complement(117305..117745) 1 NC_011244.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 117745 nusB 6918734 nusB Borrelia recurrentis A1 transcription antitermination protein NusB YP_002222589.1 117305 R 412418 CDS YP_002222590.1 203287575 6918735 complement(117764..118774) 1 NC_011244.1 RGD motif (Prosite); basic membrane protein 118774 6918735 BRE_110 Borrelia recurrentis A1 basic membrane protein YP_002222590.1 117764 R 412418 CDS YP_002222591.1 203287576 6918736 complement(118865..120058) 1 NC_011244.1 acetyl-CoA C-acetyltransferase 120058 fadA 6918736 fadA Borrelia recurrentis A1 acetyl-CoA C-acetyltransferase YP_002222591.1 118865 R 412418 CDS YP_002222592.1 203287577 6918737 120249..121604 1 NC_011244.1 RGD motif (Prosite); hypothetical protein 121604 6918737 BRE_112 Borrelia recurrentis A1 hypothetical protein YP_002222592.1 120249 D 412418 CDS YP_002222593.1 203287578 6918738 complement(121645..123039) 1 NC_011244.1 replicative DNA helicase 123039 dnaB 6918738 dnaB Borrelia recurrentis A1 replicative DNA helicase YP_002222593.1 121645 R 412418 CDS YP_002222594.1 203287579 6918739 complement(123058..123552) 1 NC_011244.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 123552 rplI 6918739 rplI Borrelia recurrentis A1 50S ribosomal protein L9 YP_002222594.1 123058 R 412418 CDS YP_002222595.1 203287580 6918740 complement(123566..123856) 1 NC_011244.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 123856 rpsR 6918740 rpsR Borrelia recurrentis A1 30S ribosomal protein S18 YP_002222595.1 123566 R 412418 CDS YP_002222596.1 203287581 6918741 complement(123869..124309) 1 NC_011244.1 single-stranded DNA-binding protein 124309 ssb 6918741 ssb Borrelia recurrentis A1 single-stranded DNA-binding protein YP_002222596.1 123869 R 412418 CDS YP_002222597.1 203287582 6918742 complement(124321..124725) 1 NC_011244.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 124725 rpsF 6918742 rpsF Borrelia recurrentis A1 30S ribosomal protein S6 YP_002222597.1 124321 R 412418 CDS YP_002222598.1 203287583 6918745 complement(128044..129324) 1 NC_011244.1 ZINC_PROTEASE and amidation motifs (Prosite); zinc protease, putative 129324 6918745 BRE_120 Borrelia recurrentis A1 zinc protease, putative YP_002222598.1 128044 R 412418 CDS YP_002222599.1 203287584 6918746 complement(129341..130306) 1 NC_011244.1 phosphatidate cytidylyltransferase 130306 cdsA 6918746 cdsA Borrelia recurrentis A1 phosphatidate cytidylyltransferase YP_002222599.1 129341 R 412418 CDS YP_002222600.1 203287585 6918747 complement(130194..130886) 1 NC_011244.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 130886 uppS 6918747 uppS Borrelia recurrentis A1 undecaprenyl pyrophosphate synthase YP_002222600.1 130194 R 412418 CDS YP_002222601.1 203287586 6918748 complement(130891..131445) 1 NC_011244.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 131445 frr 6918748 frr Borrelia recurrentis A1 ribosome recycling factor YP_002222601.1 130891 R 412418 CDS YP_002222602.1 203287587 6918749 complement(131483..132319) 1 NC_011244.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 132319 tsf 6918749 tsf Borrelia recurrentis A1 elongation factor Ts YP_002222602.1 131483 R 412418 CDS YP_002222603.1 203287588 6918750 complement(132341..133105) 1 NC_011244.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 133105 rpsB 6918750 rpsB Borrelia recurrentis A1 30S ribosomal protein S2 YP_002222603.1 132341 R 412418 CDS YP_002222604.1 203287589 6918751 complement(133141..133740) 1 NC_011244.1 maf protein 133740 maf 6918751 maf Borrelia recurrentis A1 maf protein YP_002222604.1 133141 R 412418 CDS YP_002222605.1 203287590 6918752 complement(133730..134008) 1 NC_011244.1 hypothetical protein 134008 6918752 BRE_127 Borrelia recurrentis A1 hypothetical protein YP_002222605.1 133730 R 412418 CDS YP_002222606.1 203287591 6918753 complement(134022..134696) 1 NC_011244.1 hypothetical protein 134696 6918753 BRE_128 Borrelia recurrentis A1 hypothetical protein YP_002222606.1 134022 R 412418 CDS YP_002222607.1 203287592 6918754 complement(134816..135418) 1 NC_011244.1 hypothetical protein 135418 6918754 BRE_129 Borrelia recurrentis A1 hypothetical protein YP_002222607.1 134816 R 412418 CDS YP_002222608.1 203287593 6918755 complement(135411..137078) 1 NC_011244.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 137078 rpsA 6918755 rpsA Borrelia recurrentis A1 30S ribosomal protein S1 YP_002222608.1 135411 R 412418 CDS YP_002222609.1 203287594 6918756 complement(137086..137742) 1 NC_011244.1 cytidylate kinase 137742 cmk 6918756 cmk Borrelia recurrentis A1 cytidylate kinase YP_002222609.1 137086 R 412418 CDS YP_002222610.1 203287595 6918757 complement(137739..138485) 1 NC_011244.1 pseudouridylate synthase 138485 6918757 BRE_132 Borrelia recurrentis A1 pseudouridylate synthase YP_002222610.1 137739 R 412418 CDS YP_002222611.1 203287596 6918758 complement(138457..139230) 1 NC_011244.1 hypothetical protein 139230 6918758 BRE_133 Borrelia recurrentis A1 hypothetical protein YP_002222611.1 138457 R 412418 CDS YP_002222612.1 203287597 6918760 complement(140341..143043) 1 NC_011244.1 contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein 143043 greA 6918760 greA Borrelia recurrentis A1 transcript cleavage factor/unknown domain fusion protein YP_002222612.1 140341 R 412418 CDS YP_002222613.1 203287598 6918761 complement(143079..144023) 1 NC_011244.1 hypothetical protein 144023 6918761 BRE_136 Borrelia recurrentis A1 hypothetical protein YP_002222613.1 143079 R 412418 CDS YP_002222614.1 203287599 6918762 144210..145355 1 NC_011244.1 hypothetical protein 145355 6918762 BRE_137 Borrelia recurrentis A1 hypothetical protein YP_002222614.1 144210 D 412418 CDS YP_002222615.1 203287600 6918763 complement(145395..146765) 1 NC_011244.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 146765 hisS 6918763 hisS Borrelia recurrentis A1 histidyl-tRNA synthetase YP_002222615.1 145395 R 412418 CDS YP_002222616.1 203287601 6918764 146905..148785 1 NC_011244.1 penicillin-binding protein 148785 pbp-1 6918764 pbp-1 Borrelia recurrentis A1 penicillin-binding protein YP_002222616.1 146905 D 412418 CDS YP_002222617.1 203287602 6918765 complement(148787..150676) 1 NC_011244.1 long-chain-fatty-acid CoA ligase 150676 6918765 BRE_140 Borrelia recurrentis A1 long-chain-fatty-acid CoA ligase YP_002222617.1 148787 R 412418 CDS YP_002222618.1 203287603 6918766 complement(150892..151185) 1 NC_011244.1 hypothetical protein 151185 6918766 BRE_141 Borrelia recurrentis A1 hypothetical protein YP_002222618.1 150892 R 412418 CDS YP_002222619.1 203287604 6918767 complement(151198..154437) 1 NC_011244.1 acriflavine resistance protein 154437 acrB 6918767 acrB Borrelia recurrentis A1 acriflavine resistance protein YP_002222619.1 151198 R 412418 CDS YP_002222620.1 203287605 6918768 complement(154441..155247) 1 NC_011244.1 membrane fusion protein 155247 mtrC 6918768 mtrC Borrelia recurrentis A1 membrane fusion protein YP_002222620.1 154441 R 412418 CDS YP_002222621.1 203287606 6918769 complement(155427..156794) 1 NC_011244.1 LEUCINE_ZIPPER motif (Prosite); hypothetical protein 156794 6918769 BRE_144 Borrelia recurrentis A1 hypothetical protein YP_002222621.1 155427 R 412418 CDS YP_002222622.1 203287607 6918770 156784..157086 1 NC_011244.1 hypothetical protein 157086 hlyA 6918770 hlyA Borrelia recurrentis A1 hypothetical protein YP_002222622.1 156784 D 412418 CDS YP_002222623.1 203287608 6918771 complement(157075..157971) 1 NC_011244.1 Probable lipoprotein (SpLip); glycine betaine/L-proline transport system substrate-binding protein; lipoprotein 157971 proX 6918771 proX Borrelia recurrentis A1 glycine betaine/L-proline transport system substrate-binding protein; lipoprotein YP_002222623.1 157075 R 412418 CDS YP_002222624.1 203287609 6918772 complement(158008..158907) 1 NC_011244.1 glycine betaine/L-proline transport system permease protein 158907 proW 6918772 proW Borrelia recurrentis A1 glycine betaine/L-proline transport system permease protein YP_002222624.1 158008 R 412418 CDS YP_002222625.1 203287610 6918773 complement(158914..160032) 1 NC_011244.1 glycine betaine/L-proline transport system ATP-binding protein 160032 proV 6918773 proV Borrelia recurrentis A1 glycine betaine/L-proline transport system ATP-binding protein YP_002222625.1 158914 R 412418 CDS YP_002222626.1 203287611 6918774 complement(160157..161164) 1 NC_011244.1 structural flagella protein; flagellin 161164 flaB 6918774 flaB Borrelia recurrentis A1 flagellin YP_002222626.1 160157 R 412418 CDS YP_002222627.1 203287612 6918775 complement(161292..163292) 1 NC_011244.1 involved in flagellin assembly; flagellar hook-associated protein FliD 163292 fliD 6918775 fliD Borrelia recurrentis A1 flagellar hook-associated protein FliD YP_002222627.1 161292 R 412418 CDS YP_002222628.1 203287613 6918776 163467..164672 1 NC_011244.1 N-acetylglucosamine-6-phosphate deacetylase 164672 nagA 6918776 nagA Borrelia recurrentis A1 N-acetylglucosamine-6-phosphate deacetylase YP_002222628.1 163467 D 412418 CDS YP_002222629.1 203287614 6918777 164672..165508 1 NC_011244.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 165508 nagB 6918777 nagB Borrelia recurrentis A1 glucosamine-6-phosphate deaminase YP_002222629.1 164672 D 412418 CDS YP_002222630.1 203287615 6918778 complement(165664..166275) 1 NC_011244.1 superoxide dismutase 166275 sodA 6918778 sodA Borrelia recurrentis A1 superoxide dismutase YP_002222630.1 165664 R 412418 CDS YP_002222631.1 203287616 6918779 complement(166291..168999) 1 NC_011244.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 168999 secA 6918779 secA Borrelia recurrentis A1 preprotein translocase subunit SecA YP_002222631.1 166291 R 412418 CDS YP_002222632.1 203287617 6919361 169051..170184 1 NC_011244.1 putative lipoprotein 170184 6919361 BRE_155 Borrelia recurrentis A1 putative lipoprotein YP_002222632.1 169051 D 412418 CDS YP_002222633.1 203287618 6919362 170206..170631 1 NC_011244.1 hypothetical protein 170631 6919362 BRE_156 Borrelia recurrentis A1 hypothetical protein YP_002222633.1 170206 D 412418 CDS YP_002222634.1 203287619 6919363 170635..171051 1 NC_011244.1 hypothetical protein 171051 6919363 BRE_157 Borrelia recurrentis A1 hypothetical protein YP_002222634.1 170635 D 412418 CDS YP_002222635.1 203287620 6919364 171145..172257 1 NC_011244.1 alanine racemase 172257 alr 6919364 alr Borrelia recurrentis A1 alanine racemase YP_002222635.1 171145 D 412418 CDS YP_002222636.1 203287621 6919365 complement(172249..173934) 1 NC_011244.1 hypothetical protein 173934 6919365 BRE_159 Borrelia recurrentis A1 hypothetical protein YP_002222636.1 172249 R 412418 CDS YP_002222637.1 203287622 6919366 173918..174085 1 NC_011244.1 hypothetical protein 174085 6919366 BRE_160 Borrelia recurrentis A1 hypothetical protein YP_002222637.1 173918 D 412418 CDS YP_002222638.1 203287623 6919367 complement(174090..175847) 1 NC_011244.1 hypothetical protein 175847 6919367 BRE_161 Borrelia recurrentis A1 hypothetical protein YP_002222638.1 174090 R 412418 CDS YP_002222639.1 203287624 6919368 complement(175923..176900) 1 NC_011244.1 Na+/Ca+ exchange protein 176900 6919368 BRE_162 Borrelia recurrentis A1 Na+/Ca+ exchange protein YP_002222639.1 175923 R 412418 CDS YP_002222640.1 203287625 6919369 complement(176925..178790) 1 NC_011244.1 hypothetical protein 178790 6919369 BRE_163 Borrelia recurrentis A1 hypothetical protein YP_002222640.1 176925 R 412418 CDS YP_002222641.1 203287626 6919371 180493..181650 1 NC_011244.1 outer membrane protein 181650 tpn50 6919371 tpn50 Borrelia recurrentis A1 outer membrane protein YP_002222641.1 180493 D 412418 CDS YP_002222642.1 203287627 6919372 complement(181654..182037) 1 NC_011244.1 DnaK suppressor 182037 6919372 BRE_166 Borrelia recurrentis A1 DnaK suppressor YP_002222642.1 181654 R 412418 CDS YP_002222643.1 203287628 6919373 182206..182427 1 NC_011244.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 182427 infA 6919373 infA Borrelia recurrentis A1 translation initiation factor IF-1 YP_002222643.1 182206 D 412418 CDS YP_002222644.1 203287629 6919374 complement(182472..184514) 1 NC_011244.1 2 amidation motifs and one RGD (Prosite); hypothetical protein 184514 6919374 BRE_168 Borrelia recurrentis A1 hypothetical protein YP_002222644.1 182472 R 412418 CDS YP_002222645.1 203287630 6919375 complement(184463..185050) 1 NC_011244.1 RGD motif (Prosite); Probable lipoprotein (SpLip); hypothetical protein 185050 6919375 BRE_169 Borrelia recurrentis A1 hypothetical protein YP_002222645.1 184463 R 412418 CDS YP_002222646.1 203287631 6919376 complement(185032..186021) 1 NC_011244.1 hypothetical protein 186021 6919376 BRE_170 Borrelia recurrentis A1 hypothetical protein YP_002222646.1 185032 R 412418 CDS YP_002222647.1 203287632 6919377 complement(186018..187043) 1 NC_011244.1 hypothetical protein 187043 6919377 BRE_171 Borrelia recurrentis A1 hypothetical protein YP_002222647.1 186018 R 412418 CDS YP_002222648.1 203287633 6919378 complement(187006..187914) 1 NC_011244.1 hypothetical protein 187914 6919378 BRE_172 Borrelia recurrentis A1 hypothetical protein YP_002222648.1 187006 R 412418 CDS YP_002222649.1 203287634 6919379 complement(187911..188798) 1 NC_011244.1 hypothetical protein 188798 6919379 BRE_173 Borrelia recurrentis A1 hypothetical protein YP_002222649.1 187911 R 412418 CDS YP_002222650.1 203287635 6919380 complement(188806..189798) 1 NC_011244.1 methanol dehydrogenase regulator 189798 moxR 6919380 moxR Borrelia recurrentis A1 methanol dehydrogenase regulator YP_002222650.1 188806 R 412418 CDS YP_002222651.1 203287636 6919381 complement(189868..190500) 1 NC_011244.1 glucose inhibited division protein B 190500 gidB 6919381 gidB Borrelia recurrentis A1 glucose inhibited division protein B YP_002222651.1 189868 R 412418 CDS YP_002222652.1 203287637 6919382 complement(190497..192377) 1 NC_011244.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 192377 gidA 6919382 gidA Borrelia recurrentis A1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_002222652.1 190497 R 412418 CDS YP_002222653.1 203287638 6919383 complement(192362..193756) 1 NC_011244.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 193756 trmE 6919383 trmE Borrelia recurrentis A1 tRNA modification GTPase TrmE YP_002222653.1 192362 R 412418 CDS YP_002222654.1 203287639 6919384 193895..194389 1 NC_011244.1 putative flagellar protein 194389 6919384 BRE_178 Borrelia recurrentis A1 putative flagellar protein YP_002222654.1 193895 D 412418 CDS YP_002222655.1 203287640 6919385 194408..196291 1 NC_011244.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 196291 flgK 6919385 flgK Borrelia recurrentis A1 flagellar hook-associated protein FlgK YP_002222655.1 194408 D 412418 CDS YP_002222656.1 203287641 6919386 196295..197569 1 NC_011244.1 With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 197569 flgL 6919386 flgL Borrelia recurrentis A1 flagellar hook-associated protein FlgL YP_002222656.1 196295 D 412418 CDS YP_002222657.1 203287642 6919387 197571..197963 1 NC_011244.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 197963 6919387 BRE_181 Borrelia recurrentis A1 flagellar assembly protein FliW YP_002222657.1 197571 D 412418 CDS YP_002222658.1 203287643 6919388 197966..198202 1 NC_011244.1 carbon storage regulator 198202 csrA 6919388 csrA Borrelia recurrentis A1 carbon storage regulator YP_002222658.1 197966 D 412418 CDS YP_002222659.1 203287644 6919389 complement(198187..198876) 1 NC_011244.1 hypothetical protein 198876 6919389 BRE_183 Borrelia recurrentis A1 hypothetical protein YP_002222659.1 198187 R 412418 CDS YP_002222660.1 203287645 6919390 complement(198830..199258) 1 NC_011244.1 ATP_GTP_A motif (Prosite); hypothetical protein 199258 6919390 BRE_184 Borrelia recurrentis A1 hypothetical protein YP_002222660.1 198830 R 412418 CDS YP_002222661.1 203287646 6919391 complement(199255..199554) 1 NC_011244.1 hypothetical protein 199554 6919391 BRE_185 Borrelia recurrentis A1 hypothetical protein YP_002222661.1 199255 R 412418 CDS YP_002222662.1 203287647 6919392 complement(199720..200067) 1 NC_011244.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 200067 rplT 6919392 rplT Borrelia recurrentis A1 50S ribosomal protein L20 YP_002222662.1 199720 R 412418 CDS YP_002222663.1 203287648 6919393 complement(200088..200285) 1 NC_011244.1 50S ribosomal protein L35 200285 rpmI 6919393 rpmI Borrelia recurrentis A1 50S ribosomal protein L35 YP_002222663.1 200088 R 412418 CDS YP_002222664.1 203287649 6919394 complement(200308..200868) 1 NC_011244.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 200868 infC 6919394 infC Borrelia recurrentis A1 translation initiation factor IF-3 YP_002222664.1 200308 R 412418 CDS YP_002222665.1 203287650 6919395 201046..201708 1 NC_011244.1 hypothetical protein 201708 6919395 BRE_189 Borrelia recurrentis A1 hypothetical protein YP_002222665.1 201046 D 412418 CDS YP_002222666.1 203287651 6919396 201708..202454 1 NC_011244.1 Possible lipoprotein (SpLip); hypothetical protein 202454 6919396 BRE_190 Borrelia recurrentis A1 hypothetical protein YP_002222666.1 201708 D 412418 CDS YP_002222667.1 203287652 6919397 complement(202547..203344) 1 NC_011244.1 Tatd, Mg-dependent DNase 203344 6919397 BRE_191 Borrelia recurrentis A1 Tatd, Mg-dependent DNase YP_002222667.1 202547 R 412418 CDS YP_002222668.1 203287653 6919398 complement(203341..204483) 1 NC_011244.1 hypothetical protein 204483 6919398 BRE_192 Borrelia recurrentis A1 hypothetical protein YP_002222668.1 203341 R 412418 CDS YP_002222669.1 203287654 6919399 204782..205861 1 NC_011244.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 205861 prfA 6919399 prfA Borrelia recurrentis A1 peptide chain release factor 1 YP_002222669.1 204782 D 412418 CDS YP_002222670.1 203287655 6919400 205872..206705 1 NC_011244.1 AMIDATION and N6_MTASE motifs (Prosite); HemK family methylase 206705 6919400 BRE_194 Borrelia recurrentis A1 HemK family methylase YP_002222670.1 205872 D 412418 CDS YP_002222671.1 203287656 6919401 206689..208692 1 NC_011244.1 guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase 208692 spoT 6919401 spoT Borrelia recurrentis A1 guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase YP_002222671.1 206689 D 412418 CDS YP_002222672.1 203287657 6919402 208682..210925 1 NC_011244.1 hypothetical protein 210925 6919402 BRE_196 Borrelia recurrentis A1 hypothetical protein YP_002222672.1 208682 D 412418 CDS YP_002222673.1 203287658 6919403 complement(210922..212016) 1 NC_011244.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 212016 ddlA 6919403 ddlA Borrelia recurrentis A1 D-alanyl-alanine synthetase A YP_002222673.1 210922 R 412418 CDS YP_002222674.1 203287659 6919404 complement(212021..213547) 1 NC_011244.1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate 213547 murE 6919404 murE Borrelia recurrentis A1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate YP_002222674.1 212021 R 412418 CDS YP_002222675.1 203287660 6919406 213853..215094 1 NC_011244.1 hemolysin 215094 6919406 BRE_200 Borrelia recurrentis A1 hemolysin YP_002222675.1 213853 D 412418 CDS YP_002222676.1 203287661 6919407 215219..216151 1 NC_011244.1 amidation motif (Prosite); Lambda CII stability-governing protein 216151 hflK 6919407 hflK Borrelia recurrentis A1 Lambda CII stability-governing protein YP_002222676.1 215219 D 412418 CDS YP_002222677.1 203287662 6919408 216152..217123 1 NC_011244.1 Lambda CII stability-governing protein 217123 hflC 6919408 hflC Borrelia recurrentis A1 Lambda CII stability-governing protein YP_002222677.1 216152 D 412418 CDS YP_002222678.1 203287663 6919410 217821..219359 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 219359 6919410 BRE_204 Borrelia recurrentis A1 hypothetical protein YP_002222678.1 217821 D 412418 CDS YP_002222679.1 203287664 6919411 complement(219364..219960) 1 NC_011244.1 N6-adenine-specific methylase, putative 219960 6919411 BRE_205 Borrelia recurrentis A1 N6-adenine-specific methylase, putative YP_002222679.1 219364 R 412418 CDS YP_002222680.1 203287665 6919412 219995..220825 1 NC_011244.1 UTP--glucose-1-phosphate uridylyltransferase 220825 gtaB 6919412 gtaB Borrelia recurrentis A1 UTP--glucose-1-phosphate uridylyltransferase YP_002222680.1 219995 D 412418 CDS YP_002222681.1 203287666 6919413 220826..222541 1 NC_011244.1 hypothetical protein 222541 6919413 BRE_207 Borrelia recurrentis A1 hypothetical protein YP_002222681.1 220826 D 412418 CDS YP_002222682.1 203287667 6919414 222591..224867 1 NC_011244.1 hypothetical protein 224867 6919414 BRE_208 Borrelia recurrentis A1 hypothetical protein YP_002222682.1 222591 D 412418 CDS YP_002222683.1 203287668 6919415 224860..227205 1 NC_011244.1 surface-located membrane protein 1 227205 lmp1 6919415 lmp1 Borrelia recurrentis A1 surface-located membrane protein 1 YP_002222683.1 224860 D 412418 CDS YP_002222684.1 203287669 6919416 227202..229037 1 NC_011244.1 DNA mismatch repair protein 229037 mutL 6919416 mutL Borrelia recurrentis A1 DNA mismatch repair protein YP_002222684.1 227202 D 412418 CDS YP_002222685.1 203287670 6919417 229058..230098 1 NC_011244.1 hypothetical protein 230098 6919417 BRE_211 Borrelia recurrentis A1 hypothetical protein YP_002222685.1 229058 D 412418 CDS YP_002222686.1 203287671 6919419 complement(230230..230883) 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 230883 6919419 BRE_213 Borrelia recurrentis A1 putative lipoprotein YP_002222686.1 230230 R 412418 CDS YP_002222687.1 203287672 6919420 complement(230861..231439) 1 NC_011244.1 elongation factor EF-P 231439 efp 6919420 efp Borrelia recurrentis A1 elongation factor EF-P YP_002222687.1 230861 R 412418 CDS YP_002222688.1 203287673 6919421 231505..232407 1 NC_011244.1 phosphate ABC transporter, periplasmic phosphate-binding 232407 pstS 6919421 pstS Borrelia recurrentis A1 phosphate ABC transporter, periplasmic phosphate-binding YP_002222688.1 231505 D 412418 CDS YP_002222689.1 203287674 6919422 232495..233403 1 NC_011244.1 phosphate ABC transporter, permease protein 233403 pstC 6919422 pstC Borrelia recurrentis A1 phosphate ABC transporter, permease protein YP_002222689.1 232495 D 412418 CDS YP_002222690.1 203287675 6919423 233400..234938 1 NC_011244.1 phosphate ABC transporter, permease protein 234938 pstA 6919423 pstA Borrelia recurrentis A1 phosphate ABC transporter, permease protein YP_002222690.1 233400 D 412418 CDS YP_002222691.1 203287676 6919424 234942..235706 1 NC_011244.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 235706 pstB 6919424 pstB Borrelia recurrentis A1 phosphate ABC transporter ATP-binding protein YP_002222691.1 234942 D 412418 CDS YP_002222692.1 203287677 6919425 complement(235708..236529) 1 NC_011244.1 amidation motif (Prosite); GufA protein 236529 gufA 6919425 gufA Borrelia recurrentis A1 GufA protein YP_002222692.1 235708 R 412418 CDS YP_002222693.1 203287678 6919426 complement(236557..238335) 1 NC_011244.1 catalyzes a two-step reaction, first charging an alanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 238335 alaS 6919426 alaS Borrelia recurrentis A1 alanyl-tRNA synthetase YP_002222693.1 236557 R 412418 CDS YP_002222694.1 203287679 6919427 complement(238335..239582) 1 NC_011244.1 flagellar motor switch protein 239582 fliG-1 6919427 fliG-1 Borrelia recurrentis A1 flagellar motor switch protein YP_002222694.1 238335 R 412418 CDS YP_002222695.1 203287680 6919428 complement(239557..240261) 1 NC_011244.1 6-phosphogluconolactonase 240261 pgl 6919428 pgl Borrelia recurrentis A1 6-phosphogluconolactonase YP_002222695.1 239557 R 412418 CDS YP_002222696.1 203287681 6919429 complement(240278..240970) 1 NC_011244.1 hypothetical protein 240970 6919429 BRE_223 Borrelia recurrentis A1 hypothetical protein YP_002222696.1 240278 R 412418 CDS YP_002222697.1 203287682 6919430 241040..242047 1 NC_011244.1 tRNA-dihydrouridine synthase A 242047 6919430 BRE_224 Borrelia recurrentis A1 tRNA-dihydrouridine synthase A YP_002222697.1 241040 D 412418 CDS YP_002222698.1 203287683 6919431 complement(242037..243311) 1 NC_011244.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 243311 serS 6919431 serS Borrelia recurrentis A1 seryl-tRNA synthetase YP_002222698.1 242037 R 412418 CDS YP_002222699.1 203287684 6919432 243439..244173 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 244173 6919432 BRE_226 Borrelia recurrentis A1 putative lipoprotein YP_002222699.1 243439 D 412418 CDS YP_002222700.1 203287685 6919433 244186..247104 1 NC_011244.1 amidation motif (Prosite); Zn-dependent peptidase, insulinase-like protein 247104 6919433 BRE_227 Borrelia recurrentis A1 Zn-dependent peptidase, insulinase-like protein YP_002222700.1 244186 D 412418 CDS YP_002222701.1 203287686 6919434 complement(247132..247377) 1 NC_011244.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 247377 rpmE2 6919434 rpmE2 Borrelia recurrentis A1 50S ribosomal protein L31 type B YP_002222701.1 247132 R 412418 CDS YP_002222702.1 203287687 6919435 complement(247435..248979) 1 NC_011244.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 248979 rho 6919435 rho Borrelia recurrentis A1 transcription termination factor Rho YP_002222702.1 247435 R 412418 CDS YP_002222703.1 203287688 6919436 complement(249066..249473) 1 NC_011244.1 hypothetical protein 249473 6919436 BRE_230 Borrelia recurrentis A1 hypothetical protein YP_002222703.1 249066 R 412418 CDS YP_002222704.1 203287689 6919437 complement(249477..249803) 1 NC_011244.1 HISTONE_LIKE motif (Prosite); HbbU protein 249803 6919437 BRE_231 Borrelia recurrentis A1 HbbU protein YP_002222704.1 249477 R 412418 CDS YP_002222705.1 203287690 6919438 complement(249815..250141) 1 NC_011244.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 250141 rpsT 6919438 rpsT Borrelia recurrentis A1 30S ribosomal protein S20 YP_002222705.1 249815 R 412418 CDS YP_002222706.1 203287691 6919439 complement(250145..250966) 1 NC_011244.1 hypothetical protein 250966 6919439 BRE_233 Borrelia recurrentis A1 hypothetical protein YP_002222706.1 250145 R 412418 CDS YP_002222707.1 203287692 6919440 complement(250977..252083) 1 NC_011244.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 252083 6919440 BRE_234 Borrelia recurrentis A1 GTP-dependent nucleic acid-binding protein EngD YP_002222707.1 250977 R 412418 CDS YP_002222708.1 203287693 6919441 complement(252108..254171) 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 254171 6919441 BRE_235 Borrelia recurrentis A1 hypothetical protein YP_002222708.1 252108 R 412418 CDS YP_002222709.1 203287694 6919442 254271..255824 1 NC_011244.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 255824 lnt 6919442 lnt Borrelia recurrentis A1 apolipoprotein N-acyltransferase YP_002222709.1 254271 D 412418 CDS YP_002222710.1 203287695 6919443 complement(255788..256564) 1 NC_011244.1 hypothetical protein 256564 6919443 BRE_237 Borrelia recurrentis A1 hypothetical protein YP_002222710.1 255788 R 412418 CDS YP_002222711.1 203287696 6918780 complement(256624..257244) 1 NC_011244.1 deoxyguanosine/deoxyadenosine kinase(I) subunit 2 257244 dck 6918780 dck Borrelia recurrentis A1 deoxyguanosine/deoxyadenosine kinase(I) subunit 2 YP_002222711.1 256624 R 412418 CDS YP_002222712.1 203287697 6918781 257950..258711 1 NC_011244.1 glycerol uptake facilitator 258711 glpF 6918781 glpF Borrelia recurrentis A1 glycerol uptake facilitator YP_002222712.1 257950 D 412418 CDS YP_002222713.1 203287698 6918783 260390..261745 1 NC_011244.1 glycerol-3-phosphate transporter 261745 glpT 6918783 glpT Borrelia recurrentis A1 glycerol-3-phosphate transporter YP_002222713.1 260390 D 412418 CDS YP_002222714.1 203287699 6918784 261831..262832 1 NC_011244.1 Probable lipoprotein (SpLip); glycerophosphoryl diester phosphodiesterase, periplasmic precursor (glycerophosphodiester phosphodiesterase); lipoprotein 262832 glpQ 6918784 glpQ Borrelia recurrentis A1 glycerophosphoryl diester phosphodiesterase, periplasmic precursor (glycerophosphodiester phosphodiesterase); lipoprotein YP_002222714.1 261831 D 412418 CDS YP_002222715.1 203287700 6918786 complement(264527..265021) 1 NC_011244.1 hypothetical protein 265021 6918786 BRE_244 Borrelia recurrentis A1 hypothetical protein YP_002222715.1 264527 R 412418 CDS YP_002222716.1 203287701 6918787 complement(265011..265562) 1 NC_011244.1 hypothetical protein 265562 6918787 BRE_245 Borrelia recurrentis A1 hypothetical protein YP_002222716.1 265011 R 412418 CDS YP_002222717.1 203287702 6918788 complement(265563..266588) 1 NC_011244.1 hypothetical protein 266588 6918788 BRE_246 Borrelia recurrentis A1 hypothetical protein YP_002222717.1 265563 R 412418 CDS YP_002222718.1 203287703 6918789 266793..267392 1 NC_011244.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 267392 6918789 BRE_247 Borrelia recurrentis A1 putative deoxyribonucleotide triphosphate pyrophosphatase YP_002222718.1 266793 D 412418 CDS YP_002222719.1 203287704 6918790 267518..269287 1 NC_011244.1 oligoendopeptidase F 269287 pepF 6918790 pepF Borrelia recurrentis A1 oligoendopeptidase F YP_002222719.1 267518 D 412418 CDS YP_002222720.1 203287705 6918791 269302..270006 1 NC_011244.1 Phosphatidylserine synthase 270006 6918791 BRE_249 Borrelia recurrentis A1 Phosphatidylserine synthase YP_002222720.1 269302 D 412418 CDS YP_002222721.1 203287706 6918792 270017..270631 1 NC_011244.1 DedA protein 270631 dedA 6918792 dedA Borrelia recurrentis A1 DedA protein YP_002222721.1 270017 D 412418 CDS YP_002222722.1 203287707 6918794 270831..273359 1 NC_011244.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 273359 leuS 6918794 leuS Borrelia recurrentis A1 leucyl-tRNA synthetase YP_002222722.1 270831 D 412418 CDS YP_002222723.1 203287708 6918795 273370..275637 1 NC_011244.1 MICROBODIES_CTER motif (Prosite); hypothetical protein 275637 6918795 BRE_253 Borrelia recurrentis A1 hypothetical protein YP_002222723.1 273370 D 412418 CDS YP_002222724.1 203287709 6918796 complement(275700..278150) 1 NC_011244.1 ATP-dependent protease LA 278150 lon-1 6918796 lon-1 Borrelia recurrentis A1 ATP-dependent protease LA YP_002222724.1 275700 R 412418 CDS YP_002222725.1 203287710 6918797 278219..278905 1 NC_011244.1 hypothetical protein 278905 6918797 BRE_255 Borrelia recurrentis A1 hypothetical protein YP_002222725.1 278219 D 412418 CDS YP_002222726.1 203287711 6918798 278886..281045 1 NC_011244.1 single-stranded-DNA-specific exonuclease 281045 recJ1 6918798 recJ1 Borrelia recurrentis A1 single-stranded-DNA-specific exonuclease YP_002222726.1 278886 D 412418 CDS YP_002222727.1 203287712 6918799 281045..282001 1 NC_011244.1 hypothetical protein 282001 6918799 BRE_257 Borrelia recurrentis A1 hypothetical protein YP_002222727.1 281045 D 412418 CDS YP_002222728.1 203287713 6918800 282020..282229 1 NC_011244.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 282229 rpsU 6918800 rpsU Borrelia recurrentis A1 30S ribosomal protein S21 YP_002222728.1 282020 D 412418 CDS YP_002222729.1 203287714 6918801 complement(282279..284630) 1 NC_011244.1 FtsK/SpoIIIE family protein 284630 ftsK1 6918801 ftsK1 Borrelia recurrentis A1 FtsK/SpoIIIE family protein YP_002222729.1 282279 R 412418 CDS YP_002222730.1 203287715 6918804 287819..288775 1 NC_011244.1 Amidation motif (Prosite); hypothetical protein 288775 6918804 BRE_262 Borrelia recurrentis A1 hypothetical protein YP_002222730.1 287819 D 412418 CDS YP_002222731.1 203287716 6918805 288794..289003 1 NC_011244.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 289003 rpsU 6918805 rpsU Borrelia recurrentis A1 30S ribosomal protein S21 YP_002222731.1 288794 D 412418 CDS YP_002222732.1 203287717 6918806 complement(289053..291404) 1 NC_011244.1 DNA segregation ATPase FtsK/SpoIIIE 291404 ftsK2 6918806 ftsK2 Borrelia recurrentis A1 DNA segregation ATPase FtsK/SpoIIIE YP_002222732.1 289053 R 412418 CDS YP_002222733.1 203287718 6918807 complement(291417..292217) 1 NC_011244.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 292217 bacA 6918807 bacA Borrelia recurrentis A1 undecaprenyl pyrophosphate phosphatase YP_002222733.1 291417 R 412418 CDS YP_002222734.1 203287719 6918808 complement(292231..294381) 1 NC_011244.1 Probable lipoprotein (SpLip); hypothetical protein 294381 6918808 BRE_266 Borrelia recurrentis A1 hypothetical protein YP_002222734.1 292231 R 412418 CDS YP_002222735.1 203287720 6918809 complement(294362..295567) 1 NC_011244.1 LEUCINE_ZIPPER motif (Prosite); hypothetical protein 295567 6918809 BRE_267 Borrelia recurrentis A1 hypothetical protein YP_002222735.1 294362 R 412418 CDS YP_002222736.1 203287721 6918810 295727..297130 1 NC_011244.1 hypothetical protein 297130 6918810 BRE_268 Borrelia recurrentis A1 hypothetical protein YP_002222736.1 295727 D 412418 CDS YP_002222737.1 203287722 6918811 complement(297132..298400) 1 NC_011244.1 putative membrane proteins related to metalloendopeptidases; hypothetical protein 298400 6918811 BRE_269 Borrelia recurrentis A1 hypothetical protein YP_002222737.1 297132 R 412418 CDS YP_002222738.1 203287723 6918812 298470..298973 1 NC_011244.1 signal peptidase I 298973 lepB-3 6918812 lepB-3 Borrelia recurrentis A1 signal peptidase I YP_002222738.1 298470 D 412418 CDS YP_002222739.1 203287724 6918813 complement(299006..300514) 1 NC_011244.1 heat shock protein 70 300514 dnaK-1 6918813 dnaK-1 Borrelia recurrentis A1 heat shock protein 70 YP_002222739.1 299006 R 412418 CDS YP_002222740.1 203287725 6918814 complement(300511..301008) 1 NC_011244.1 hypothetical protein 301008 6918814 BRE_272 Borrelia recurrentis A1 hypothetical protein YP_002222740.1 300511 R 412418 CDS YP_002222741.1 203287726 6918815 complement(301029..301340) 1 NC_011244.1 hypothetical protein 301340 6918815 BRE_273 Borrelia recurrentis A1 hypothetical protein YP_002222741.1 301029 R 412418 CDS YP_002222742.1 203287727 6918816 complement(301364..303262) 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 303262 6918816 BRE_274 Borrelia recurrentis A1 hypothetical protein YP_002222742.1 301364 R 412418 CDS YP_002222743.1 203287728 6918817 complement(303265..303753) 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 303753 6918817 BRE_275 Borrelia recurrentis A1 hypothetical protein YP_002222743.1 303265 R 412418 CDS YP_002222744.1 203287729 6918818 complement(303760..304650) 1 NC_011244.1 ATP-binding protein 304650 ylxH-1 6918818 ylxH-1 Borrelia recurrentis A1 ATP-binding protein YP_002222744.1 303760 R 412418 CDS YP_002222745.1 203287730 6918819 complement(304660..305841) 1 NC_011244.1 Positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 305841 flhF 6918819 flhF Borrelia recurrentis A1 flagellar biosynthesis regulator FlhF YP_002222745.1 304660 R 412418 CDS YP_002222746.1 203287731 6918820 complement(305831..307918) 1 NC_011244.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 307918 flhA 6918820 flhA Borrelia recurrentis A1 flagellar biosynthesis protein FlhA YP_002222746.1 305831 R 412418 CDS YP_002222747.1 203287732 6918821 complement(307931..309052) 1 NC_011244.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 309052 flhB 6918821 flhB Borrelia recurrentis A1 flagellar biosynthesis protein FlhB YP_002222747.1 307931 R 412418 CDS YP_002222748.1 203287733 6918822 complement(309049..309837) 1 NC_011244.1 flagellar biosynthesis protein 309837 fliR 6918822 fliR Borrelia recurrentis A1 flagellar biosynthesis protein YP_002222748.1 309049 R 412418 CDS YP_002222749.1 203287734 6918823 complement(309854..310117) 1 NC_011244.1 flagellar biosynthesis protein 310117 fliQ 6918823 fliQ Borrelia recurrentis A1 flagellar biosynthesis protein YP_002222749.1 309854 R 412418 CDS YP_002222750.1 203287735 6918824 complement(310126..310890) 1 NC_011244.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 310890 fliP 6918824 fliP Borrelia recurrentis A1 flagellar biosynthesis protein FliP YP_002222750.1 310126 R 412418 CDS YP_002222751.1 203287736 6918825 complement(310900..311532) 1 NC_011244.1 possible structural component of the flagellum that anchors the rod to the membrane; flagellar biosynthesis protein FliZ 311532 fliZ 6918825 fliZ Borrelia recurrentis A1 flagellar biosynthesis protein FliZ YP_002222751.1 310900 R 412418 CDS YP_002222752.1 203287737 6918826 complement(311525..311869) 1 NC_011244.1 flagellar motor switch protein 311869 fliN 6918826 fliN Borrelia recurrentis A1 flagellar motor switch protein YP_002222752.1 311525 R 412418 CDS YP_002222753.1 203287738 6918827 complement(311916..312974) 1 NC_011244.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 312974 fliM 6918827 fliM Borrelia recurrentis A1 flagellar motor switch protein FliM YP_002222753.1 311916 R 412418 CDS YP_002222754.1 203287739 6918828 complement(312994..313530) 1 NC_011244.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 313530 fliL 6918828 fliL Borrelia recurrentis A1 flagellar basal body-associated protein FliL YP_002222754.1 312994 R 412418 CDS YP_002222755.1 203287740 6918829 complement(313574..314362) 1 NC_011244.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 314362 motB 6918829 motB Borrelia recurrentis A1 flagellar motor protein MotB YP_002222755.1 313574 R 412418 CDS YP_002222756.1 203287741 6918830 complement(314362..315147) 1 NC_011244.1 flagellar motor rotation protein A 315147 motA 6918830 motA Borrelia recurrentis A1 flagellar motor rotation protein A YP_002222756.1 314362 R 412418 CDS YP_002222757.1 203287742 6918831 complement(315144..315365) 1 NC_011244.1 flagellar protein 315365 flbD 6918831 flbD Borrelia recurrentis A1 flagellar protein YP_002222757.1 315144 R 412418 CDS YP_002222758.1 203287743 6918832 complement(315382..316707) 1 NC_011244.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 316707 flgE 6918832 flgE Borrelia recurrentis A1 flagellar hook protein FlgE YP_002222758.1 315382 R 412418 CDS YP_002222759.1 203287744 6918833 complement(316712..317152) 1 NC_011244.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 317152 flgD 6918833 flgD Borrelia recurrentis A1 flagellar basal body rod modification protein YP_002222759.1 316712 R 412418 CDS YP_002222760.1 203287745 6918834 complement(317165..318334) 1 NC_011244.1 flagellar protein 318334 flbC 6918834 flbC Borrelia recurrentis A1 flagellar protein YP_002222760.1 317165 R 412418 CDS YP_002222761.1 203287746 6918835 complement(318338..318952) 1 NC_011244.1 flagellar protein 318952 flbB 6918835 flbB Borrelia recurrentis A1 flagellar protein YP_002222761.1 318338 R 412418 CDS YP_002222762.1 203287747 6918836 complement(318945..319376) 1 NC_011244.1 flagellar protein 319376 flbA 6918836 flbA Borrelia recurrentis A1 flagellar protein YP_002222762.1 318945 R 412418 CDS YP_002222763.1 203287748 6918837 complement(319373..320683) 1 NC_011244.1 flagellum-specific ATP synthase 320683 fliI 6918837 fliI Borrelia recurrentis A1 flagellum-specific ATP synthase YP_002222763.1 319373 R 412418 CDS YP_002222764.1 203287749 6918838 complement(320697..321623) 1 NC_011244.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 321623 fliH 6918838 fliH Borrelia recurrentis A1 flagellar assembly protein H YP_002222764.1 320697 R 412418 CDS YP_002222765.1 203287750 6918839 complement(321632..322666) 1 NC_011244.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 322666 fliG 6918839 fliG Borrelia recurrentis A1 flagellar motor switch protein G YP_002222765.1 321632 R 412418 CDS YP_002222766.1 203287751 6918840 complement(322682..324388) 1 NC_011244.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 324388 fliF 6918840 fliF Borrelia recurrentis A1 flagellar MS-ring protein YP_002222766.1 322682 R 412418 CDS YP_002222767.1 203287752 6918841 complement(324402..324731) 1 NC_011244.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 324731 fliE 6918841 fliE Borrelia recurrentis A1 flagellar hook-basal body protein FliE YP_002222767.1 324402 R 412418 CDS YP_002222768.1 203287753 6918842 complement(324747..325211) 1 NC_011244.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 325211 flgC 6918842 flgC Borrelia recurrentis A1 flagellar basal body rod protein FlgC YP_002222768.1 324747 R 412418 CDS YP_002222769.1 203287754 6918843 complement(325234..325641) 1 NC_011244.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 325641 flgB 6918843 flgB Borrelia recurrentis A1 flagellar basal body rod protein FlgB YP_002222769.1 325234 R 412418 CDS YP_002222770.1 203287755 6918844 complement(325674..327029) 1 NC_011244.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 327029 hslU 6918844 hslU Borrelia recurrentis A1 ATP-dependent protease ATP-binding subunit HslU YP_002222770.1 325674 R 412418 CDS YP_002222771.1 203287756 6918845 complement(327026..327568) 1 NC_011244.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 327568 hslV 6918845 hslV Borrelia recurrentis A1 ATP-dependent protease peptidase subunit YP_002222771.1 327026 R 412418 CDS YP_002222772.1 203287757 6918847 complement(328531..329220) 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 329220 6918847 BRE_305 Borrelia recurrentis A1 putative lipoprotein YP_002222772.1 328531 R 412418 CDS YP_002222773.1 203287758 6918848 complement(329221..330417) 1 NC_011244.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 330417 ftsZ 6918848 ftsZ Borrelia recurrentis A1 cell division protein FtsZ YP_002222773.1 329221 R 412418 CDS YP_002222774.1 203287759 6918849 complement(330438..331679) 1 NC_011244.1 cell division protein 331679 ftsA 6918849 ftsA Borrelia recurrentis A1 cell division protein YP_002222774.1 330438 R 412418 CDS YP_002222775.1 203287760 6918850 complement(331679..332422) 1 NC_011244.1 cell division protein 332422 divIB 6918850 divIB Borrelia recurrentis A1 cell division protein YP_002222775.1 331679 R 412418 CDS YP_002222776.1 203287761 6918851 complement(332454..333557) 1 NC_011244.1 cell division protein 333557 ftsW 6918851 ftsW Borrelia recurrentis A1 cell division protein YP_002222776.1 332454 R 412418 CDS YP_002222777.1 203287762 6918852 complement(333568..334623) 1 NC_011244.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 334623 mraY 6918852 mraY Borrelia recurrentis A1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002222777.1 333568 R 412418 CDS YP_002222778.1 203287763 6918853 complement(334647..336044) 1 NC_011244.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase 336044 murF 6918853 murF Borrelia recurrentis A1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase YP_002222778.1 334647 R 412418 CDS YP_002222779.1 203287764 6918854 complement(336060..336341) 1 NC_011244.1 hypothetical protein 336341 6918854 BRE_312 Borrelia recurrentis A1 hypothetical protein YP_002222779.1 336060 R 412418 CDS YP_002222780.1 203287765 6918855 complement(336334..337227) 1 NC_011244.1 S-adenosyl-methyltransferase 337227 6918855 BRE_313 Borrelia recurrentis A1 S-adenosyl-methyltransferase YP_002222780.1 336334 R 412418 CDS YP_002222781.1 203287766 6918856 complement(337220..338050) 1 NC_011244.1 hypothetical protein 338050 6918856 BRE_314 Borrelia recurrentis A1 hypothetical protein YP_002222781.1 337220 R 412418 CDS YP_002222782.1 203287767 6918857 complement(338054..339142) 1 NC_011244.1 hypothetical protein 339142 6918857 BRE_315 Borrelia recurrentis A1 hypothetical protein YP_002222782.1 338054 R 412418 CDS YP_002222783.1 203287768 6918858 complement(339153..339911) 1 NC_011244.1 MULTICOPPER_OXIDASE1 motif (Prosite); hypothetical protein 339911 6918858 BRE_316 Borrelia recurrentis A1 hypothetical protein YP_002222783.1 339153 R 412418 CDS YP_002222784.1 203287769 6918859 complement(339943..341529) 1 NC_011244.1 DNA repair ATPase 341529 recN 6918859 recN Borrelia recurrentis A1 DNA repair ATPase YP_002222784.1 339943 R 412418 CDS YP_002222785.1 203287770 6918860 complement(341556..342455) 1 NC_011244.1 probable inorganic polyphosphate/ATP-NAD kinase 342455 6918860 BRE_318 Borrelia recurrentis A1 probable inorganic polyphosphate/ATP-NAD kinase YP_002222785.1 341556 R 412418 CDS YP_002222786.1 203287771 6918861 complement(342388..342915) 1 NC_011244.1 purine-binding chemotaxis protein 342915 cheW-1 6918861 cheW-1 Borrelia recurrentis A1 purine-binding chemotaxis protein YP_002222786.1 342388 R 412418 CDS YP_002222787.1 203287772 6918862 complement(342956..343537) 1 NC_011244.1 ribosomal RNA methyltransferase 343537 ftsJ 6918862 ftsJ Borrelia recurrentis A1 ribosomal RNA methyltransferase YP_002222787.1 342956 R 412418 CDS YP_002222788.1 203287773 6918863 343590..344636 1 NC_011244.1 octaprenyl-diphosphate synthase 344636 ispB 6918863 ispB Borrelia recurrentis A1 octaprenyl-diphosphate synthase YP_002222788.1 343590 D 412418 CDS YP_002222789.1 203287774 6918864 344633..345301 1 NC_011244.1 hypothetical protein 345301 6918864 BRE_322 Borrelia recurrentis A1 hypothetical protein YP_002222789.1 344633 D 412418 CDS YP_002222790.1 203287775 6918865 complement(345298..346104) 1 NC_011244.1 hypothetical protein 346104 6918865 BRE_323 Borrelia recurrentis A1 hypothetical protein YP_002222790.1 345298 R 412418 CDS YP_002222791.1 203287776 6918866 complement(346105..347037) 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 347037 6918866 BRE_324 Borrelia recurrentis A1 hypothetical protein YP_002222791.1 346105 R 412418 CDS YP_002222792.1 203287777 6918867 complement(347034..348491) 1 NC_011244.1 methylgalactoside ABC transporter, ATP-binding protein 348491 mglA-1 6918867 mglA-1 Borrelia recurrentis A1 methylgalactoside ABC transporter, ATP-binding protein YP_002222792.1 347034 R 412418 CDS YP_002222793.1 203287778 6918868 complement(348495..349568) 1 NC_011244.1 LEUCINE_ZIPPER motif (Prosite); exported protein 349568 tpn38b 6918868 tpn38b Borrelia recurrentis A1 exported protein YP_002222793.1 348495 R 412418 CDS YP_002222794.1 203287779 6918869 complement(349968..351059) 1 NC_011244.1 hypothetical protein 351059 6918869 BRE_327 Borrelia recurrentis A1 hypothetical protein YP_002222794.1 349968 R 412418 CDS YP_002222795.1 203287780 6918870 351560..352681 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 352681 6918870 BRE_328 Borrelia recurrentis A1 putative lipoprotein YP_002222795.1 351560 D 412418 CDS YP_002222796.1 203287781 6918871 352775..353137 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 353137 6918871 BRE_329 Borrelia recurrentis A1 putative lipoprotein YP_002222796.1 352775 D 412418 CDS YP_002222797.1 203287782 6918872 complement(353171..354286) 1 NC_011244.1 hypothetical protein 354286 6918872 BRE_330 Borrelia recurrentis A1 hypothetical protein YP_002222797.1 353171 R 412418 CDS YP_002222798.1 203287783 6918873 complement(354350..357205) 1 NC_011244.1 hypothetical protein 357205 6918873 BRE_331 Borrelia recurrentis A1 hypothetical protein YP_002222798.1 354350 R 412418 CDS YP_002222799.1 203287784 6918874 complement(357220..358113) 1 NC_011244.1 glycerol-3-phosphate O-acyltransferase 358113 6918874 BRE_332 Borrelia recurrentis A1 glycerol-3-phosphate O-acyltransferase YP_002222799.1 357220 R 412418 CDS YP_002222800.1 203287785 6918876 360242..361915 1 NC_011244.1 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein 361915 oppA-2 6918876 oppA-2 Borrelia recurrentis A1 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein YP_002222800.1 360242 D 412418 CDS YP_002222801.1 203287786 6918877 362280..363200 1 NC_011244.1 Possible lipoprotein (SpLip); oligopeptide ABC transporter, permease protein 363200 oppB-1 6918877 oppB-1 Borrelia recurrentis A1 oligopeptide ABC transporter, permease protein YP_002222801.1 362280 D 412418 CDS YP_002222802.1 203287787 6918878 363184..364269 1 NC_011244.1 oligopeptide transport system permease protein 364269 oppC-1 6918878 oppC-1 Borrelia recurrentis A1 oligopeptide transport system permease protein YP_002222802.1 363184 D 412418 CDS YP_002222803.1 203287788 6918879 364280..365152 1 NC_011244.1 oligopeptide transport system ATP-binding protein 365152 oppD 6918879 oppD Borrelia recurrentis A1 oligopeptide transport system ATP-binding protein YP_002222803.1 364280 D 412418 CDS YP_002222804.1 203287789 6918880 365153..366136 1 NC_011244.1 oligopeptide transport system ATP-binding protein 366136 oppF 6918880 oppF Borrelia recurrentis A1 oligopeptide transport system ATP-binding protein YP_002222804.1 365153 D 412418 CDS YP_002222805.1 203287790 6918881 complement(366262..367068) 1 NC_011244.1 P26 367068 6918881 BRE_339 Borrelia recurrentis A1 P26 YP_002222805.1 366262 R 412418 CDS YP_002222806.1 203287791 6918882 367146..368444 1 NC_011244.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 368444 eno 6918882 eno Borrelia recurrentis A1 phosphopyruvate hydratase YP_002222806.1 367146 D 412418 CDS YP_002222807.1 203287792 6918883 complement(368515..368925) 1 NC_011244.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 368925 rpsI 6918883 rpsI Borrelia recurrentis A1 30S ribosomal protein S9 YP_002222807.1 368515 R 412418 CDS YP_002222808.1 203287793 6918884 complement(368936..369385) 1 NC_011244.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 369385 rplM 6918884 rplM Borrelia recurrentis A1 50S ribosomal protein L13 YP_002222808.1 368936 R 412418 CDS YP_002222809.1 203287794 6918885 complement(369465..370250) 1 NC_011244.1 hypothetical protein 370250 6918885 BRE_343 Borrelia recurrentis A1 hypothetical protein YP_002222809.1 369465 R 412418 CDS YP_002222810.1 203287795 6918886 complement(370243..371700) 1 NC_011244.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 371700 gatB 6918886 gatB Borrelia recurrentis A1 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_002222810.1 370243 R 412418 CDS YP_002222811.1 203287796 6918887 complement(371690..373135) 1 NC_011244.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 373135 gatA 6918887 gatA Borrelia recurrentis A1 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_002222811.1 371690 R 412418 CDS YP_002222812.1 203287797 6918888 complement(373147..373422) 1 NC_011244.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 373422 gatC 6918888 gatC Borrelia recurrentis A1 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_002222812.1 373147 R 412418 CDS YP_002222813.1 203287798 6918889 complement(373432..375528) 1 NC_011244.1 DNA helicase 375528 uvrD 6918889 uvrD Borrelia recurrentis A1 DNA helicase YP_002222813.1 373432 R 412418 CDS YP_002222814.1 203287799 6918890 complement(375525..376727) 1 NC_011244.1 AMIDATION; hypothetical protein 376727 6918890 BRE_348 Borrelia recurrentis A1 hypothetical protein YP_002222814.1 375525 R 412418 CDS YP_002222815.1 203287800 6918891 complement(376739..377416) 1 NC_011244.1 hypothetical protein 377416 6918891 BRE_349 Borrelia recurrentis A1 hypothetical protein YP_002222815.1 376739 R 412418 CDS YP_002222816.1 203287801 6918892 377556..378965 1 NC_011244.1 fibronectin/fibrinogen-binding protein, putative 378965 6918892 BRE_350 Borrelia recurrentis A1 fibronectin/fibrinogen-binding protein, putative YP_002222816.1 377556 D 412418 CDS YP_002222817.1 203287802 6918893 379079..380512 1 NC_011244.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 380512 pyk 6918893 pyk Borrelia recurrentis A1 pyruvate kinase YP_002222817.1 379079 D 412418 CDS YP_002222818.1 203287803 6918894 complement(381286..381564) 1 NC_011244.1 required for 70S ribosome assembly; 50S ribosomal protein L28 381564 rpmB 6918894 rpmB Borrelia recurrentis A1 50S ribosomal protein L28 YP_002222818.1 381286 R 412418 CDS YP_002222819.1 203287804 6918895 complement(381574..383172) 1 NC_011244.1 hypothetical protein 383172 6918895 BRE_353 Borrelia recurrentis A1 hypothetical protein YP_002222819.1 381574 R 412418 CDS YP_002222820.1 203287805 6918896 383256..384371 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 384371 6918896 BRE_354 Borrelia recurrentis A1 putative lipoprotein YP_002222820.1 383256 D 412418 CDS YP_002222821.1 203287806 6918897 complement(384366..386180) 1 NC_011244.1 hypothetical protein 386180 6918897 BRE_355 Borrelia recurrentis A1 hypothetical protein YP_002222821.1 384366 R 412418 CDS YP_002222822.1 203287807 6918898 complement(386186..387130) 1 NC_011244.1 hypothetical protein 387130 6918898 BRE_356 Borrelia recurrentis A1 hypothetical protein YP_002222822.1 386186 R 412418 CDS YP_002222823.1 203287808 6918899 complement(387157..387651) 1 NC_011244.1 transcription factor, putative 387651 6918899 BRE_357 Borrelia recurrentis A1 transcription factor, putative YP_002222823.1 387157 R 412418 CDS YP_002222824.1 203287809 6918900 complement(387696..388289) 1 NC_011244.1 hypothetical protein 388289 6918900 BRE_358 Borrelia recurrentis A1 hypothetical protein YP_002222824.1 387696 R 412418 CDS YP_002222825.1 203287810 6918901 complement(388282..389010) 1 NC_011244.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 389010 6918901 BRE_359 Borrelia recurrentis A1 16S ribosomal RNA methyltransferase RsmE YP_002222825.1 388282 R 412418 CDS YP_002222826.1 203287811 6918902 complement(389014..390498) 1 NC_011244.1 carboxyl-terminal protease 390498 ctp 6918902 ctp Borrelia recurrentis A1 carboxyl-terminal protease YP_002222826.1 389014 R 412418 CDS YP_002222827.1 203287812 6918903 390541..390972 1 NC_011244.1 hypothetical protein 390972 6918903 BRE_361 Borrelia recurrentis A1 hypothetical protein YP_002222827.1 390541 D 412418 CDS YP_002222828.1 203287813 6918904 390976..392109 1 NC_011244.1 ATP-binding protein 392109 ylxH-2 6918904 ylxH-2 Borrelia recurrentis A1 ATP-binding protein YP_002222828.1 390976 D 412418 CDS YP_002222829.1 203287814 6918905 392120..393073 1 NC_011244.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 393073 lgt 6918905 lgt Borrelia recurrentis A1 prolipoprotein diacylglyceryl transferase YP_002222829.1 392120 D 412418 CDS YP_002222830.1 203287815 6918906 393131..395128 1 NC_011244.1 periplasmic protein 395128 6918906 BRE_364 Borrelia recurrentis A1 periplasmic protein YP_002222830.1 393131 D 412418 CDS YP_002222831.1 203287816 6918907 395261..396634 1 NC_011244.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 1 396634 yscI 6918907 yscI Borrelia recurrentis A1 putative aminopeptidase 1 YP_002222831.1 395261 D 412418 CDS YP_002222832.1 203287817 6918908 396585..396902 1 NC_011244.1 hypothetical protein 396902 6918908 BRE_366 Borrelia recurrentis A1 hypothetical protein YP_002222832.1 396585 D 412418 CDS YP_002222833.1 203287818 6918909 complement(396923..397975) 1 NC_011244.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 397975 gpsA 6918909 gpsA Borrelia recurrentis A1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002222833.1 396923 R 412418 CDS YP_002222834.1 203287819 6918911 complement(400301..401521) 1 NC_011244.1 tyrosyl-tRNA synthetase 401521 tyrS 6918911 tyrS Borrelia recurrentis A1 tyrosyl-tRNA synthetase YP_002222834.1 400301 R 412418 CDS YP_002222835.1 203287820 6918912 complement(401526..402863) 1 NC_011244.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 402863 glyS 6918912 glyS Borrelia recurrentis A1 glycyl-tRNA synthetase YP_002222835.1 401526 R 412418 CDS YP_002222836.1 203287821 6918913 complement(402878..404398) 1 NC_011244.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 404398 gltX 6918913 gltX Borrelia recurrentis A1 glutamyl-tRNA synthetase YP_002222836.1 402878 R 412418 CDS YP_002222837.1 203287822 6918914 complement(404367..405149) 1 NC_011244.1 hypothetical protein 405149 6918914 BRE_372 Borrelia recurrentis A1 hypothetical protein YP_002222837.1 404367 R 412418 CDS YP_002222838.1 203287823 6918915 405281..406426 1 NC_011244.1 hypothetical protein 406426 6918915 BRE_373 Borrelia recurrentis A1 hypothetical protein YP_002222838.1 405281 D 412418 CDS YP_002222839.1 203287824 6918916 406440..407153 1 NC_011244.1 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine 407153 pfs-1 6918916 pfs-1 Borrelia recurrentis A1 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine YP_002222839.1 406440 D 412418 CDS YP_002222840.1 203287825 6918917 407170..408339 1 NC_011244.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 408339 metK 6918917 metK Borrelia recurrentis A1 S-adenosylmethionine synthetase YP_002222840.1 407170 D 412418 CDS YP_002222841.1 203287826 6918918 408252..408809 1 NC_011244.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 408809 6918918 BRE_376 Borrelia recurrentis A1 S-ribosylhomocysteinase YP_002222841.1 408252 D 412418 CDS YP_002222842.1 203287827 6918919 complement(408938..409369) 1 NC_011244.1 protein kinase C1 inhibitor 409369 pkcI 6918919 pkcI Borrelia recurrentis A1 protein kinase C1 inhibitor YP_002222842.1 408938 R 412418 CDS YP_002222843.1 203287828 6918920 complement(409405..410766) 1 NC_011244.1 Mg2 transport protein 410766 mgtE 6918920 mgtE Borrelia recurrentis A1 Mg2 transport protein YP_002222843.1 409405 R 412418 CDS YP_002222844.1 203287829 6918921 complement(410821..412245) 1 NC_011244.1 hypothetical protein 412245 6918921 BRE_379 Borrelia recurrentis A1 hypothetical protein YP_002222844.1 410821 R 412418 CDS YP_002222845.1 203287830 6918922 complement(412519..413538) 1 NC_011244.1 basic membrane protein A 413538 bmpA-1 6918922 bmpA-1 Borrelia recurrentis A1 basic membrane protein A YP_002222845.1 412519 R 412418 CDS YP_002222846.1 203287831 6918923 complement(413594..414664) 1 NC_011244.1 Probable lipoprotein (SpLip); basic membrane protein C; lipoprotein 414664 bmpC 6918923 bmpC Borrelia recurrentis A1 basic membrane protein C; lipoprotein YP_002222846.1 413594 R 412418 CDS YP_002222847.1 203287832 6918924 complement(414823..415851) 1 NC_011244.1 Probable lipoprotein (SpLip); basic membrane protein A; lipoprotein 415851 bmpA-2 6918924 bmpA-2 Borrelia recurrentis A1 basic membrane protein A; lipoprotein YP_002222847.1 414823 R 412418 CDS YP_002222848.1 203287833 6918925 complement(415875..416921) 1 NC_011244.1 basic membrane protein D 416921 bmpD 6918925 bmpD Borrelia recurrentis A1 basic membrane protein D YP_002222848.1 415875 R 412418 CDS YP_002222849.1 203287834 6918926 complement(416985..417458) 1 NC_011244.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 417458 rpsG 6918926 rpsG Borrelia recurrentis A1 30S ribosomal protein S7 YP_002222849.1 416985 R 412418 CDS YP_002222850.1 203287835 6918927 complement(417473..417847) 1 NC_011244.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 417847 rpsL 6918927 rpsL Borrelia recurrentis A1 30S ribosomal protein S12 YP_002222850.1 417473 R 412418 CDS YP_002222851.1 203287836 6918928 complement(417910..422043) 1 NC_011244.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 422043 rpoC 6918928 rpoC Borrelia recurrentis A1 DNA-directed RNA polymerase subunit beta' YP_002222851.1 417910 R 412418 CDS YP_002222852.1 203287837 6918929 complement(422058..425525) 1 NC_011244.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 425525 rpoB 6918929 rpoB Borrelia recurrentis A1 DNA-directed RNA polymerase subunit beta YP_002222852.1 422058 R 412418 CDS YP_002222853.1 203287838 6918930 complement(425611..425982) 1 NC_011244.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 425982 rplL 6918930 rplL Borrelia recurrentis A1 50S ribosomal protein L7/L12 YP_002222853.1 425611 R 412418 CDS YP_002222854.1 203287839 6918931 complement(426056..426544) 1 NC_011244.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 426544 rplJ 6918931 rplJ Borrelia recurrentis A1 50S ribosomal protein L10 YP_002222854.1 426056 R 412418 CDS YP_002222855.1 203287840 6918932 complement(426555..427229) 1 NC_011244.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 427229 rplA 6918932 rplA Borrelia recurrentis A1 50S ribosomal protein L1 YP_002222855.1 426555 R 412418 CDS YP_002222856.1 203287841 6918933 complement(427229..427663) 1 NC_011244.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 427663 rplK 6918933 rplK Borrelia recurrentis A1 50S ribosomal protein L11 YP_002222856.1 427229 R 412418 CDS YP_002222857.1 203287842 6918934 complement(427719..428273) 1 NC_011244.1 transcription antitermination factor 428273 nusG 6918934 nusG Borrelia recurrentis A1 transcription antitermination factor YP_002222857.1 427719 R 412418 CDS YP_002222858.1 203287843 6918935 complement(428284..428454) 1 NC_011244.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 428454 secE 6918935 secE Borrelia recurrentis A1 preprotein translocase subunit SecE YP_002222858.1 428284 R 412418 CDS YP_002222859.1 203287844 6918937 complement(428567..428746) 1 NC_011244.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 428746 rpmG 6918937 rpmG Borrelia recurrentis A1 50S ribosomal protein L33 YP_002222859.1 428567 R 412418 CDS YP_002222860.1 203287845 6918939 complement(428944..429795) 1 NC_011244.1 hypothetical protein 429795 6918939 BRE_397 Borrelia recurrentis A1 hypothetical protein YP_002222860.1 428944 R 412418 CDS YP_002222861.1 203287846 6918940 complement(429806..430870) 1 NC_011244.1 Probable lipoprotein (SpLip); hypothetical protein 430870 6918940 BRE_398 Borrelia recurrentis A1 hypothetical protein YP_002222861.1 429806 R 412418 CDS YP_002222862.1 203287847 6918941 430853..432208 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 432208 6918941 BRE_399 Borrelia recurrentis A1 putative lipoprotein YP_002222862.1 430853 D 412418 CDS YP_002222863.1 203287848 6918942 432221..432877 1 NC_011244.1 hypothetical protein 432877 6918942 BRE_400 Borrelia recurrentis A1 hypothetical protein YP_002222863.1 432221 D 412418 CDS YP_002222864.1 203287849 6918943 433027..434217 1 NC_011244.1 glutamate transporter, putative 434217 6918943 BRE_401 Borrelia recurrentis A1 glutamate transporter, putative YP_002222864.1 433027 D 412418 CDS YP_002222865.1 203287850 6918944 complement(434244..435719) 1 NC_011244.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 435719 proS 6918944 proS Borrelia recurrentis A1 prolyl-tRNA synthetase YP_002222865.1 434244 R 412418 CDS YP_002222866.1 203287851 6918945 436493..437116 1 NC_011244.1 hypothetical protein 437116 6918945 BRE_403 Borrelia recurrentis A1 hypothetical protein YP_002222866.1 436493 D 412418 CDS YP_002222867.1 203287852 6918946 437140..437964 1 NC_011244.1 hypothetical protein 437964 6918946 BRE_404 Borrelia recurrentis A1 hypothetical protein YP_002222867.1 437140 D 412418 CDS YP_002222868.1 203287853 6918947 complement(438015..439136) 1 NC_011244.1 mannose-6-phosphate isomerase 439136 manA 6918947 manA Borrelia recurrentis A1 mannose-6-phosphate isomerase YP_002222868.1 438015 R 412418 CDS YP_002222869.1 203287854 6918948 complement(439249..441000) 1 NC_011244.1 PTS system, fructose-specific IIABC component 441000 fruA-1 6918948 fruA-1 Borrelia recurrentis A1 PTS system, fructose-specific IIABC component YP_002222869.1 439249 R 412418 CDS YP_002222870.1 203287855 6918949 441125..441805 1 NC_011244.1 hypothetical protein 441805 6918949 BRE_407 Borrelia recurrentis A1 hypothetical protein YP_002222870.1 441125 D 412418 CDS YP_002222871.1 203287856 6918950 441802..442686 1 NC_011244.1 endonuclease precursor 442686 nucA 6918950 nucA Borrelia recurrentis A1 endonuclease precursor YP_002222871.1 441802 D 412418 CDS YP_002222872.1 203287857 6918951 442683..443447 1 NC_011244.1 hypothetical protein 443447 6918951 BRE_409 Borrelia recurrentis A1 hypothetical protein YP_002222872.1 442683 D 412418 CDS YP_002222873.1 203287858 6918952 complement(443467..444063) 1 NC_011244.1 hypothetical protein 444063 6918952 BRE_410 Borrelia recurrentis A1 hypothetical protein YP_002222873.1 443467 R 412418 CDS YP_002222874.1 203287859 6918953 complement(444063..445082) 1 NC_011244.1 Probable lipoprotein (SpLip); peptidyl-prolyl cis-trans isomerase 445082 6918953 BRE_411 Borrelia recurrentis A1 peptidyl-prolyl cis-trans isomerase YP_002222874.1 444063 R 412418 CDS YP_002222875.1 203287860 6918954 445230..446093 1 NC_011244.1 chemotaxis protein methyltransferase 446093 cheR-2 6918954 cheR-2 Borrelia recurrentis A1 chemotaxis protein methyltransferase YP_002222875.1 445230 D 412418 CDS YP_002222876.1 203287861 6918955 446129..447289 1 NC_011244.1 protein-glutamate methylesterase 447289 cheB-1 6918955 cheB-1 Borrelia recurrentis A1 protein-glutamate methylesterase YP_002222876.1 446129 D 412418 CDS YP_002222877.1 203287862 6918956 447313..448521 1 NC_011244.1 pheromone shutdown protein 448521 traB 6918956 traB Borrelia recurrentis A1 pheromone shutdown protein YP_002222877.1 447313 D 412418 CDS YP_002222878.1 203287863 6918957 448561..449208 1 NC_011244.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 449208 adk 6918957 adk Borrelia recurrentis A1 adenylate kinase YP_002222878.1 448561 D 412418 CDS YP_002222879.1 203287864 6918958 449303..450379 1 NC_011244.1 hypothetical protein 450379 6918958 BRE_416 Borrelia recurrentis A1 hypothetical protein YP_002222879.1 449303 D 412418 CDS YP_002222880.1 203287865 6918959 complement(450395..451327) 1 NC_011244.1 response regulatory protein 451327 rrp-1 6918959 rrp-1 Borrelia recurrentis A1 response regulatory protein YP_002222880.1 450395 R 412418 CDS YP_002222881.1 203287866 6918960 complement(451324..455769) 1 NC_011244.1 sensory transduction histidine kinase 455769 6918960 BRE_418 Borrelia recurrentis A1 sensory transduction histidine kinase YP_002222881.1 451324 R 412418 CDS YP_002222882.1 203287867 6918963 complement(459041..459928) 1 NC_011244.1 hydrolase 459928 6918963 BRE_421 Borrelia recurrentis A1 hydrolase YP_002222882.1 459041 R 412418 CDS YP_002222883.1 203287868 6918964 460014..460538 1 NC_011244.1 hypoxanthine phosphoribosyltransferase 460538 hpt 6918964 hpt Borrelia recurrentis A1 hypoxanthine phosphoribosyltransferase YP_002222883.1 460014 D 412418 CDS YP_002222884.1 203287869 6918965 460548..461831 1 NC_011244.1 adenylosuccinate synthase 461831 purA 6918965 purA Borrelia recurrentis A1 adenylosuccinate synthase YP_002222884.1 460548 D 412418 CDS YP_002222885.1 203287870 6918966 461816..463210 1 NC_011244.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 463210 purB 6918966 purB Borrelia recurrentis A1 adenylosuccinate lyase YP_002222885.1 461816 D 412418 CDS YP_002222886.1 203287871 6918967 complement(463216..463806) 1 NC_011244.1 3-methyladenine DNA glycosylase 463806 mag 6918967 mag Borrelia recurrentis A1 3-methyladenine DNA glycosylase YP_002222886.1 463216 R 412418 CDS YP_002222887.1 203287872 6918971 complement(466526..467200) 1 NC_011244.1 RGD and UPF0011 motifs (Prosite); hypothetical protein 467200 6918971 BRE_429 Borrelia recurrentis A1 hypothetical protein YP_002222887.1 466526 R 412418 CDS YP_002222888.1 203287873 6918972 467457..467774 1 NC_011244.1 hypothetical protein 467774 6918972 BRE_430 Borrelia recurrentis A1 hypothetical protein YP_002222888.1 467457 D 412418 CDS YP_002222889.1 203287874 6918973 complement(467781..468170) 1 NC_011244.1 hypothetical protein 468170 6918973 BRE_431 Borrelia recurrentis A1 hypothetical protein YP_002222889.1 467781 R 412418 CDS YP_002222890.1 203287875 6918974 468284..468862 1 NC_011244.1 proline dipeptidase (PepQ) 468862 pepQ 6918974 pepQ Borrelia recurrentis A1 proline dipeptidase (PepQ) YP_002222890.1 468284 D 412418 CDS YP_002222891.1 203287876 6918976 complement(469469..470251) 1 NC_011244.1 stage 0 sporulation protein J 470251 spo0J 6918976 spo0J Borrelia recurrentis A1 stage 0 sporulation protein J YP_002222891.1 469469 R 412418 CDS YP_002222892.1 203287877 6918977 complement(470388..472835) 1 NC_011244.1 DNA gyrase, subunit A 472835 gyrA 6918977 gyrA Borrelia recurrentis A1 DNA gyrase, subunit A YP_002222892.1 470388 R 412418 CDS YP_002222893.1 203287878 6918978 complement(472832..474751) 1 NC_011244.1 DNA gyrase, subunit B 474751 gyrB 6918978 gyrB Borrelia recurrentis A1 DNA gyrase, subunit B YP_002222893.1 472832 R 412418 CDS YP_002222894.1 203287879 6918979 474985..476439 1 NC_011244.1 chromosomal replication initiator protein 476439 dnaA 6918979 dnaA Borrelia recurrentis A1 chromosomal replication initiator protein YP_002222894.1 474985 D 412418 CDS YP_002222895.1 203287880 6918980 476703..477863 1 NC_011244.1 DNA polymerase III, subunit beta 477863 dnaN 6918980 dnaN Borrelia recurrentis A1 DNA polymerase III, subunit beta YP_002222895.1 476703 D 412418 CDS YP_002222896.1 203287881 6918981 477884..478951 1 NC_011244.1 DNA replication and repair protein RecF 478951 recF 6918981 recF Borrelia recurrentis A1 DNA replication and repair protein RecF YP_002222896.1 477884 D 412418 CDS YP_002222897.1 203287882 6918982 478932..479231 1 NC_011244.1 hypothetical protein 479231 6918982 BRE_440 Borrelia recurrentis A1 hypothetical protein YP_002222897.1 478932 D 412418 CDS YP_002222898.1 203287883 6918983 479326..479481 1 NC_011244.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 479481 rpmH 6918983 rpmH Borrelia recurrentis A1 50S ribosomal protein L34 YP_002222898.1 479326 D 412418 CDS YP_002222899.1 203287884 6918984 479462..479806 1 NC_011244.1 ribonuclease P protein component 479806 rnpA 6918984 rnpA Borrelia recurrentis A1 ribonuclease P protein component YP_002222899.1 479462 D 412418 CDS YP_002222900.1 203287885 6918985 479803..481440 1 NC_011244.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 481440 6918985 BRE_443 Borrelia recurrentis A1 putative inner membrane protein translocase component YidC YP_002222900.1 479803 D 412418 CDS YP_002222901.1 203287886 6918986 481437..482159 1 NC_011244.1 spoIIIJ-associated protein 482159 jag 6918986 jag Borrelia recurrentis A1 spoIIIJ-associated protein YP_002222901.1 481437 D 412418 CDS YP_002222902.1 203287887 6918987 482216..483274 1 NC_011244.1 nucleotide sugar epimerase 483274 6918987 BRE_445 Borrelia recurrentis A1 nucleotide sugar epimerase YP_002222902.1 482216 D 412418 CDS YP_002222903.1 203287888 6918988 483413..484492 1 NC_011244.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 484492 fba 6918988 fba Borrelia recurrentis A1 fructose-bisphosphate aldolase YP_002222903.1 483413 D 412418 CDS YP_002222904.1 203287889 6918989 484724..485155 1 NC_011244.1 heat shock protein, HSP20 family 485155 6918989 BRE_447 Borrelia recurrentis A1 heat shock protein, HSP20 family YP_002222904.1 484724 D 412418 CDS YP_002222905.1 203287890 6918990 complement(485200..486951) 1 NC_011244.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 486951 aspS 6918990 aspS Borrelia recurrentis A1 aspartyl-tRNA synthetase YP_002222905.1 485200 R 412418 CDS YP_002222906.1 203287891 6918991 complement(486955..489075) 1 NC_011244.1 Na+ /H+ antiporter 489075 napA_1 6918991 napA_1 Borrelia recurrentis A1 Na+ /H+ antiporter YP_002222906.1 486955 R 412418 CDS YP_002222907.1 203287892 6918992 complement(489072..489350) 1 NC_011244.1 phosphocarrier protein HPr 489350 ptsH-1 6918992 ptsH-1 Borrelia recurrentis A1 phosphocarrier protein HPr YP_002222907.1 489072 R 412418 CDS YP_002222908.1 203287893 6918993 complement(489365..489676) 1 NC_011244.1 hypothetical protein 489676 6918993 BRE_451 Borrelia recurrentis A1 hypothetical protein YP_002222908.1 489365 R 412418 CDS YP_002222909.1 203287894 6918994 complement(489651..490907) 1 NC_011244.1 RNA polymerase sigma-54 factor 490907 ntrA 6918994 ntrA Borrelia recurrentis A1 RNA polymerase sigma-54 factor YP_002222909.1 489651 R 412418 CDS YP_002222910.1 203287895 6918995 complement(490910..491443) 1 NC_011244.1 chromate transport protein, putative 491443 6918995 BRE_453 Borrelia recurrentis A1 chromate transport protein, putative YP_002222910.1 490910 R 412418 CDS YP_002222911.1 203287896 6918996 complement(491409..492023) 1 NC_011244.1 AMIDATION and MICROBODIES_CTER motifs (Prosite); Chromate transport protein, putative 492023 6918996 BRE_454 Borrelia recurrentis A1 Chromate transport protein, putative YP_002222911.1 491409 R 412418 CDS YP_002222912.1 203287897 6918997 492147..493088 1 NC_011244.1 hypothetical protein 493088 6918997 BRE_455 Borrelia recurrentis A1 hypothetical protein YP_002222912.1 492147 D 412418 CDS YP_002222913.1 203287898 6918998 complement(493072..494238) 1 NC_011244.1 AMIDATION motif (Prosite); lipopolysaccharide biosynthesis-related protein 494238 6918998 BRE_456 Borrelia recurrentis A1 lipopolysaccharide biosynthesis-related protein YP_002222913.1 493072 R 412418 CDS YP_002222914.1 203287899 6918999 494306..495289 1 NC_011244.1 DNA polymerase III delta subunit 495289 6918999 BRE_457 Borrelia recurrentis A1 DNA polymerase III delta subunit YP_002222914.1 494306 D 412418 CDS YP_002222915.1 203287900 6919000 complement(495293..497101) 1 NC_011244.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 497101 uvrC 6919000 uvrC Borrelia recurrentis A1 excinuclease ABC subunit C YP_002222915.1 495293 R 412418 CDS YP_002222916.1 203287901 6919001 497212..498729 1 NC_011244.1 hypothetical protein 498729 6919001 BRE_459 Borrelia recurrentis A1 hypothetical protein YP_002222916.1 497212 D 412418 CDS YP_002222917.1 203287902 6919002 498665..500029 1 NC_011244.1 hypothetical protein 500029 6919002 BRE_460 Borrelia recurrentis A1 hypothetical protein YP_002222917.1 498665 D 412418 CDS YP_002222918.1 203287903 6919005 complement(500352..501083) 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 501083 6919005 BRE_463 Borrelia recurrentis A1 putative lipoprotein YP_002222918.1 500352 R 412418 CDS YP_002222919.1 203287904 6919008 501628..503295 1 NC_011244.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 503295 dnaX 6919008 dnaX Borrelia recurrentis A1 DNA polymerase III subunits gamma and tau YP_002222919.1 501628 D 412418 CDS YP_002222920.1 203287905 6919009 503298..503597 1 NC_011244.1 hypothetical protein 503597 6919009 BRE_467 Borrelia recurrentis A1 hypothetical protein YP_002222920.1 503298 D 412418 CDS YP_002222921.1 203287906 6919010 503601..504185 1 NC_011244.1 recombination protein RecR 504185 recR 6919010 recR Borrelia recurrentis A1 recombination protein RecR YP_002222921.1 503601 D 412418 CDS YP_002222922.1 203287907 6919011 504437..505018 1 NC_011244.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 505018 ndk 6919011 ndk Borrelia recurrentis A1 nucleoside diphosphate kinase YP_002222922.1 504437 D 412418 CDS YP_002222923.1 203287908 6919012 505022..505846 1 NC_011244.1 putative adenine-specific DNA methyltransferase 505846 6919012 BRE_470 Borrelia recurrentis A1 putative adenine-specific DNA methyltransferase YP_002222923.1 505022 D 412418 CDS YP_002222924.1 203287909 6919013 506060..506596 1 NC_011244.1 hypothetical protein 506596 6919013 BRE_471 Borrelia recurrentis A1 hypothetical protein YP_002222924.1 506060 D 412418 CDS YP_002222925.1 203287910 6919014 506593..507288 1 NC_011244.1 hypothetical protein 507288 6919014 BRE_472 Borrelia recurrentis A1 hypothetical protein YP_002222925.1 506593 D 412418 CDS YP_002222926.1 203287911 6919015 507224..508057 1 NC_011244.1 ABC transporter, ATP-binding protein 508057 6919015 BRE_473 Borrelia recurrentis A1 ABC transporter, ATP-binding protein YP_002222926.1 507224 D 412418 CDS YP_002222927.1 203287912 6919016 508054..508743 1 NC_011244.1 amidation and RGD motifs (Prosite); hypothetical protein 508743 6919016 BRE_474 Borrelia recurrentis A1 hypothetical protein YP_002222927.1 508054 D 412418 CDS YP_002222928.1 203287913 6919017 508745..509491 1 NC_011244.1 hypothetical protein 509491 6919017 BRE_475 Borrelia recurrentis A1 hypothetical protein YP_002222928.1 508745 D 412418 CDS YP_002222929.1 203287914 6919018 509501..510013 1 NC_011244.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; signal peptidase II 510013 lspA 6919018 lspA Borrelia recurrentis A1 signal peptidase II YP_002222929.1 509501 D 412418 CDS YP_002222930.1 203287915 6919019 510010..510234 1 NC_011244.1 hypothetical protein 510234 6919019 BRE_477 Borrelia recurrentis A1 hypothetical protein YP_002222930.1 510010 D 412418 CDS YP_002222931.1 203287916 6919020 510249..511067 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 511067 6919020 BRE_478 Borrelia recurrentis A1 hypothetical protein YP_002222931.1 510249 D 412418 CDS YP_002222932.1 203287917 6919021 511126..512406 1 NC_011244.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 512406 murA 6919021 murA Borrelia recurrentis A1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002222932.1 511126 D 412418 CDS YP_002222933.1 203287918 6919022 512643..514001 1 NC_011244.1 hypothetical protein 514001 6919022 BRE_480 Borrelia recurrentis A1 hypothetical protein YP_002222933.1 512643 D 412418 CDS YP_002222934.1 203287919 6919023 complement(514148..514471) 1 NC_011244.1 Probable lipoprotein (SpLip); hypothetical protein 514471 6919023 BRE_481 Borrelia recurrentis A1 hypothetical protein YP_002222934.1 514148 R 412418 CDS YP_002222935.1 203287920 6919024 514819..516003 1 NC_011244.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 516003 tuf 6919024 tuf Borrelia recurrentis A1 elongation factor Tu YP_002222935.1 514819 D 412418 CDS YP_002222936.1 203287921 6919025 516049..516360 1 NC_011244.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 516360 rpsJ 6919025 rpsJ Borrelia recurrentis A1 30S ribosomal protein S10 YP_002222936.1 516049 D 412418 CDS YP_002222937.1 203287922 6919026 516394..517023 1 NC_011244.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 517023 rplC 6919026 rplC Borrelia recurrentis A1 50S ribosomal protein L3 YP_002222937.1 516394 D 412418 CDS YP_002222938.1 203287923 6919027 517025..517654 1 NC_011244.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 517654 rplD 6919027 rplD Borrelia recurrentis A1 50S ribosomal protein L4 YP_002222938.1 517025 D 412418 CDS YP_002222939.1 203287924 6919028 517676..517972 1 NC_011244.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 517972 rplW 6919028 rplW Borrelia recurrentis A1 50S ribosomal protein L23 YP_002222939.1 517676 D 412418 CDS YP_002222940.1 203287925 6919029 517991..518824 1 NC_011244.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 518824 rplB 6919029 rplB Borrelia recurrentis A1 50S ribosomal protein L2 YP_002222940.1 517991 D 412418 CDS YP_002222941.1 203287926 6919030 518834..519112 1 NC_011244.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 519112 rpsS 6919030 rpsS Borrelia recurrentis A1 30S ribosomal protein S19 YP_002222941.1 518834 D 412418 CDS YP_002222942.1 203287927 6919031 519119..519481 1 NC_011244.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 519481 rplV 6919031 rplV Borrelia recurrentis A1 50S ribosomal protein L22 YP_002222942.1 519119 D 412418 CDS YP_002222943.1 203287928 6919032 519485..520315 1 NC_011244.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 520315 rpsC 6919032 rpsC Borrelia recurrentis A1 30S ribosomal protein S3 YP_002222943.1 519485 D 412418 CDS YP_002222944.1 203287929 6919033 520334..520750 1 NC_011244.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 520750 rplP 6919033 rplP Borrelia recurrentis A1 50S ribosomal protein L16 YP_002222944.1 520334 D 412418 CDS YP_002222945.1 203287930 6919034 520754..520954 1 NC_011244.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 520954 rpmC 6919034 rpmC Borrelia recurrentis A1 50S ribosomal protein L29 YP_002222945.1 520754 D 412418 CDS YP_002222946.1 203287931 6919035 520960..521214 1 NC_011244.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 521214 rpsQ 6919035 rpsQ Borrelia recurrentis A1 30S ribosomal protein S17 YP_002222946.1 520960 D 412418 CDS YP_002222947.1 203287932 6919036 521262..521630 1 NC_011244.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 521630 rplN 6919036 rplN Borrelia recurrentis A1 50S ribosomal protein L14 YP_002222947.1 521262 D 412418 CDS YP_002222948.1 203287933 6919037 521641..521946 1 NC_011244.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 521946 rplX 6919037 rplX Borrelia recurrentis A1 50S ribosomal protein L24 YP_002222948.1 521641 D 412418 CDS YP_002222949.1 203287934 6919038 521950..522498 1 NC_011244.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 522498 rplE 6919038 rplE Borrelia recurrentis A1 50S ribosomal protein L5 YP_002222949.1 521950 D 412418 CDS YP_002222950.1 203287935 6919039 522513..522698 1 NC_011244.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 522698 rpsN 6919039 rpsN Borrelia recurrentis A1 30S ribosomal protein S14 YP_002222950.1 522513 D 412418 CDS YP_002222951.1 203287936 6919040 522708..523106 1 NC_011244.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 523106 rpsH 6919040 rpsH Borrelia recurrentis A1 30S ribosomal protein S8 YP_002222951.1 522708 D 412418 CDS YP_002222952.1 203287937 6919041 523126..523668 1 NC_011244.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 523668 rplF 6919041 rplF Borrelia recurrentis A1 50S ribosomal protein L6 YP_002222952.1 523126 D 412418 CDS YP_002222953.1 203287938 6919042 523686..524045 1 NC_011244.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 524045 rplR 6919042 rplR Borrelia recurrentis A1 50S ribosomal protein L18 YP_002222953.1 523686 D 412418 CDS YP_002222954.1 203287939 6919043 524057..524551 1 NC_011244.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 524551 rpsE 6919043 rpsE Borrelia recurrentis A1 30S ribosomal protein S5 YP_002222954.1 524057 D 412418 CDS YP_002222955.1 203287940 6919044 524555..524866 1 NC_011244.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 524866 rpmD 6919044 rpmD Borrelia recurrentis A1 50S ribosomal protein L30 YP_002222955.1 524555 D 412418 CDS YP_002222956.1 203287941 6919045 524859..525296 1 NC_011244.1 late assembly protein; 50S ribosomal protein L15 525296 rplO 6919045 rplO Borrelia recurrentis A1 50S ribosomal protein L15 YP_002222956.1 524859 D 412418 CDS YP_002222957.1 203287942 6919046 525309..526613 1 NC_011244.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 526613 secY 6919046 secY Borrelia recurrentis A1 preprotein translocase subunit SecY YP_002222957.1 525309 D 412418 CDS YP_002222958.1 203287943 6919047 526623..526736 1 NC_011244.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 526736 rpmJ 6919047 rpmJ Borrelia recurrentis A1 50S ribosomal protein L36 YP_002222958.1 526623 D 412418 CDS YP_002222959.1 203287944 6919048 526746..527123 1 NC_011244.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 527123 rpsM 6919048 rpsM Borrelia recurrentis A1 30S ribosomal protein S13 YP_002222959.1 526746 D 412418 CDS YP_002222960.1 203287945 6919049 527154..527543 1 NC_011244.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 527543 rpsK 6919049 rpsK Borrelia recurrentis A1 30S ribosomal protein S11 YP_002222960.1 527154 D 412418 CDS YP_002222961.1 203287946 6919050 527559..528590 1 NC_011244.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 528590 rpoA 6919050 rpoA Borrelia recurrentis A1 DNA-directed RNA polymerase subunit alpha YP_002222961.1 527559 D 412418 CDS YP_002222962.1 203287947 6919051 528609..528980 1 NC_011244.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 528980 rplQ 6919051 rplQ Borrelia recurrentis A1 50S ribosomal protein L17 YP_002222962.1 528609 D 412418 CDS YP_002222963.1 203287948 6919052 529055..530596 1 NC_011244.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 530596 6919052 BRE_510 Borrelia recurrentis A1 phosphodiesterase YP_002222963.1 529055 D 412418 CDS YP_002222964.1 203287949 6919053 530565..531377 1 NC_011244.1 hypothetical protein 531377 6919053 BRE_511 Borrelia recurrentis A1 hypothetical protein YP_002222964.1 530565 D 412418 CDS YP_002222965.1 203287950 6919054 531358..532149 1 NC_011244.1 hemolysin 532149 tlyA 6919054 tlyA Borrelia recurrentis A1 hemolysin YP_002222965.1 531358 D 412418 CDS YP_002222966.1 203287951 6919055 complement(532146..532925) 1 NC_011244.1 LEUCINE_ZIPPER and MICROBODIES_CTER motifs (Prosite); hypothetical protein 532925 6919055 BRE_513 Borrelia recurrentis A1 hypothetical protein YP_002222966.1 532146 R 412418 CDS YP_002222967.1 203287952 6919056 532981..534303 1 NC_011244.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 534303 engA 6919056 engA Borrelia recurrentis A1 GTP-binding protein EngA YP_002222967.1 532981 D 412418 CDS YP_002222968.1 203287953 6919057 534300..535553 1 NC_011244.1 hypothetical protein 535553 6919057 BRE_515 Borrelia recurrentis A1 hypothetical protein YP_002222968.1 534300 D 412418 CDS YP_002222969.1 203287954 6919058 535559..536245 1 NC_011244.1 putative hydrolase 536245 6919058 BRE_516 Borrelia recurrentis A1 putative hydrolase YP_002222969.1 535559 D 412418 CDS YP_002222970.1 203287955 6919059 536264..543250 1 NC_011244.1 RGD and LEUCINE_ZIPPER motifs (Prosite); p-512 protein 543250 6919059 BRE_517 Borrelia recurrentis A1 p-512 protein YP_002222970.1 536264 D 412418 CDS YP_002222971.1 203287956 6919060 543261..544808 1 NC_011244.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit alpha 544808 pheS 6919060 pheS Borrelia recurrentis A1 phenylalanyl-tRNA synthetase subunit alpha YP_002222971.1 543261 D 412418 CDS YP_002222972.1 203287957 6919061 544801..546495 1 NC_011244.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit beta 546495 pheT 6919061 pheT Borrelia recurrentis A1 phenylalanyl-tRNA synthetase subunit beta YP_002222972.1 544801 D 412418 CDS YP_002222973.1 203287958 6919062 546584..547561 1 NC_011244.1 thioredoxin reductase 547561 trxB 6919062 trxB Borrelia recurrentis A1 thioredoxin reductase YP_002222973.1 546584 D 412418 CDS YP_002222974.1 203287959 6919063 complement(547590..548324) 1 NC_011244.1 rRNA methylase 548324 yacO 6919063 yacO Borrelia recurrentis A1 rRNA methylase YP_002222974.1 547590 R 412418 CDS YP_002222975.1 203287960 6919064 complement(548326..549426) 1 NC_011244.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 549426 dnaJ-1 6919064 dnaJ-1 Borrelia recurrentis A1 chaperone protein DnaJ YP_002222975.1 548326 R 412418 CDS YP_002222976.1 203287961 6919065 complement(549426..551324) 1 NC_011244.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 551324 dnaK 6919065 dnaK Borrelia recurrentis A1 molecular chaperone DnaK YP_002222976.1 549426 R 412418 CDS YP_002222977.1 203287962 6919066 complement(551368..551916) 1 NC_011244.1 chaperone protein GrpE 551916 grpE 6919066 grpE Borrelia recurrentis A1 chaperone protein GrpE YP_002222977.1 551368 R 412418 CDS YP_002222978.1 203287963 6919067 552280..553848 1 NC_011244.1 NH(3)-dependent NAD synthetase 553848 6919067 BRE_525 Borrelia recurrentis A1 NH(3)-dependent NAD synthetase YP_002222978.1 552280 D 412418 CDS YP_002222979.1 203287964 6919068 553835..555424 1 NC_011244.1 Response regulator receiver (CheY) modulated Serine phosphatase 555424 6919068 BRE_526 Borrelia recurrentis A1 Response regulator receiver (CheY) modulated Serine phosphatase YP_002222979.1 553835 D 412418 CDS YP_002222980.1 203287965 6919069 complement(555576..556031) 1 NC_011244.1 hypothetical protein 556031 6919069 BRE_527 Borrelia recurrentis A1 hypothetical protein YP_002222980.1 555576 R 412418 CDS YP_002222981.1 203287966 6919070 556139..557947 1 NC_011244.1 2 LEUCINE_ZIPPER motifs (Prosite); hypothetical protein 557947 6919070 BRE_528 Borrelia recurrentis A1 hypothetical protein YP_002222981.1 556139 D 412418 CDS YP_002222982.1 203287967 6919071 557937..558731 1 NC_011244.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 558731 6919071 BRE_529 Borrelia recurrentis A1 pantothenate kinase YP_002222982.1 557937 D 412418 CDS YP_002222983.1 203287968 6919072 complement(558709..559539) 1 NC_011244.1 LEUCINE_ZIPPER motif (Prosite); hypothetical protein 559539 6919072 BRE_530 Borrelia recurrentis A1 hypothetical protein YP_002222983.1 558709 R 412418 CDS YP_002222984.1 203287969 6919073 complement(559520..560131) 1 NC_011244.1 hypothetical protein 560131 6919073 BRE_531 Borrelia recurrentis A1 hypothetical protein YP_002222984.1 559520 R 412418 CDS YP_002222985.1 203287970 6919074 complement(560134..561423) 1 NC_011244.1 hypothetical protein 561423 6919074 BRE_532 Borrelia recurrentis A1 hypothetical protein YP_002222985.1 560134 R 412418 CDS YP_002222986.1 203287971 6919075 561584..562342 1 NC_011244.1 phnP protein 562342 phnP 6919075 phnP Borrelia recurrentis A1 phnP protein YP_002222986.1 561584 D 412418 CDS YP_002222987.1 203287972 6919076 562354..563118 1 NC_011244.1 exodeoxyribonuclease III 563118 exoA 6919076 exoA Borrelia recurrentis A1 exodeoxyribonuclease III YP_002222987.1 562354 D 412418 CDS YP_002222988.1 203287973 6919077 563142..563903 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 563903 6919077 BRE_535 Borrelia recurrentis A1 hypothetical protein YP_002222988.1 563142 D 412418 CDS YP_002222989.1 203287974 6919078 563900..566725 1 NC_011244.1 Probable lipoprotein (SpLip); zinc protease, putative; lipoprotein 566725 6919078 BRE_536 Borrelia recurrentis A1 zinc protease, putative; lipoprotein YP_002222989.1 563900 D 412418 CDS YP_002222990.1 203287975 6919079 complement(566748..568184) 1 NC_011244.1 ZINC_PROTEASE motif (Prosite); hypothetical protein 568184 6919079 BRE_537 Borrelia recurrentis A1 hypothetical protein YP_002222990.1 566748 R 412418 CDS YP_002222991.1 203287976 6919083 complement(568609..569256) 1 NC_011244.1 TPR domain protein 569256 6919083 BRE_541 Borrelia recurrentis A1 TPR domain protein YP_002222991.1 568609 R 412418 CDS YP_002222992.1 203287977 6919084 complement(569253..569603) 1 NC_011244.1 hypothetical protein 569603 6919084 BRE_542 Borrelia recurrentis A1 hypothetical protein YP_002222992.1 569253 R 412418 CDS YP_002222993.1 203287978 6919085 complement(569692..570387) 1 NC_011244.1 hypothetical protein 570387 6919085 BRE_543 Borrelia recurrentis A1 hypothetical protein YP_002222993.1 569692 R 412418 CDS YP_002222994.1 203287979 6919086 complement(570400..572481) 1 NC_011244.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 572481 fus-1 6919086 fus-1 Borrelia recurrentis A1 elongation factor G YP_002222994.1 570400 R 412418 CDS YP_002222995.1 203287980 6919087 573018..573260 1 NC_011244.1 hypothetical protein 573260 6919087 BRE_545 Borrelia recurrentis A1 hypothetical protein YP_002222995.1 573018 D 412418 CDS YP_002222996.1 203287981 6919088 573463..574548 1 NC_011244.1 LEUCINE_ZIPPER and AMIDATION motifs (Prosite); hypothetical protein 574548 6919088 BRE_546 Borrelia recurrentis A1 hypothetical protein YP_002222996.1 573463 D 412418 CDS YP_002222997.1 203287982 6919089 574652..575203 1 NC_011244.1 Probable lipoprotein (SpLip); hypothetical protein 575203 6919089 BRE_547 Borrelia recurrentis A1 hypothetical protein YP_002222997.1 574652 D 412418 CDS YP_002222998.1 203287983 6919090 575258..575926 1 NC_011244.1 hypothetical protein 575926 6919090 BRE_548 Borrelia recurrentis A1 hypothetical protein YP_002222998.1 575258 D 412418 CDS YP_002222999.1 203287984 6919091 576084..577304 1 NC_011244.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 577304 prs 6919091 prs Borrelia recurrentis A1 phosphoribosylpyrophosphate synthetase YP_002222999.1 576084 D 412418 CDS YP_002223000.1 203287985 6919092 577309..578673 1 NC_011244.1 xylulokinase 578673 xylB 6919092 xylB Borrelia recurrentis A1 xylulokinase YP_002223000.1 577309 D 412418 CDS YP_002223001.1 203287986 6919093 complement(578656..579360) 1 NC_011244.1 hypothetical protein 579360 6919093 BRE_551 Borrelia recurrentis A1 hypothetical protein YP_002223001.1 578656 R 412418 CDS YP_002223002.1 203287987 6919094 complement(579360..579956) 1 NC_011244.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 579956 coaE 6919094 coaE Borrelia recurrentis A1 dephospho-CoA kinase YP_002223002.1 579360 R 412418 CDS YP_002223003.1 203287988 6919095 complement(579935..582703) 1 NC_011244.1 DNA polymerase I 582703 polA 6919095 polA Borrelia recurrentis A1 DNA polymerase I YP_002223003.1 579935 R 412418 CDS YP_002223004.1 203287989 6919096 complement(582700..583104) 1 NC_011244.1 hypothetical protein 583104 6919096 BRE_554 Borrelia recurrentis A1 hypothetical protein YP_002223004.1 582700 R 412418 CDS YP_002223005.1 203287990 6919097 complement(583094..583516) 1 NC_011244.1 flagellar protein 583516 flaJ 6919097 flaJ Borrelia recurrentis A1 flagellar protein YP_002223005.1 583094 R 412418 CDS YP_002223006.1 203287991 6919098 complement(583527..583937) 1 NC_011244.1 chemotaxis response regulator 583937 cheY-1 6919098 cheY-1 Borrelia recurrentis A1 chemotaxis response regulator YP_002223006.1 583527 R 412418 CDS YP_002223007.1 203287992 6919099 584100..586109 1 NC_011244.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 586109 ligA 6919099 ligA Borrelia recurrentis A1 NAD-dependent DNA ligase LigA YP_002223007.1 584100 D 412418 CDS YP_002223008.1 203287993 6919100 complement(586112..588400) 1 NC_011244.1 hypothetical protein 588400 6919100 BRE_558 Borrelia recurrentis A1 hypothetical protein YP_002223008.1 586112 R 412418 CDS YP_002223009.1 203287994 6919101 588685..590553 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 590553 6919101 BRE_559 Borrelia recurrentis A1 hypothetical protein YP_002223009.1 588685 D 412418 CDS YP_002223010.1 203287995 6919102 590540..591001 1 NC_011244.1 hypothetical protein 591001 6919102 BRE_560 Borrelia recurrentis A1 hypothetical protein YP_002223010.1 590540 D 412418 CDS YP_002223011.1 203287996 6919103 590998..591858 1 NC_011244.1 hypothetical protein 591858 6919103 BRE_561 Borrelia recurrentis A1 hypothetical protein YP_002223011.1 590998 D 412418 CDS YP_002223012.1 203287997 6919104 592018..592278 1 NC_011244.1 phosphocarrier protein HPr 592278 ptsH-2 6919104 ptsH-2 Borrelia recurrentis A1 phosphocarrier protein HPr YP_002223012.1 592018 D 412418 CDS YP_002223013.1 203287998 6919105 592279..594015 1 NC_011244.1 phosphoenolpyruvate-protein phosphatase 594015 ptsI 6919105 ptsI Borrelia recurrentis A1 phosphoenolpyruvate-protein phosphatase YP_002223013.1 592279 D 412418 CDS YP_002223014.1 203287999 6919106 594019..594588 1 NC_011244.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 594588 crr 6919106 crr Borrelia recurrentis A1 PTS system glucose-specific transporter subunit YP_002223014.1 594019 D 412418 CDS YP_002223015.1 203288000 6919107 complement(594625..596472) 1 NC_011244.1 molecular chaperone; heat shock protein 90 596472 htpG 6919107 htpG Borrelia recurrentis A1 heat shock protein 90 YP_002223015.1 594625 R 412418 CDS YP_002223016.1 203288001 6919108 596587..597981 1 NC_011244.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 597981 gnd 6919108 gnd Borrelia recurrentis A1 6-phosphogluconate dehydrogenase YP_002223016.1 596587 D 412418 CDS YP_002223017.1 203288002 6919109 complement(597996..598532) 1 NC_011244.1 hypothetical protein 598532 6919109 BRE_567 Borrelia recurrentis A1 hypothetical protein YP_002223017.1 597996 R 412418 CDS YP_002223018.1 203288003 6919110 complement(598656..599174) 1 NC_011244.1 hypothetical protein 599174 6919110 BRE_568 Borrelia recurrentis A1 hypothetical protein YP_002223018.1 598656 R 412418 CDS YP_002223019.1 203288004 6919111 complement(599389..599898) 1 NC_011244.1 hypothetical protein 599898 6919111 BRE_569 Borrelia recurrentis A1 hypothetical protein YP_002223019.1 599389 R 412418 CDS YP_002223020.1 203288005 6919112 600237..600770 1 NC_011244.1 purine-binding chemotaxis protein 600770 cheW-2 6919112 cheW-2 Borrelia recurrentis A1 purine-binding chemotaxis protein YP_002223020.1 600237 D 412418 CDS YP_002223021.1 203288006 6919113 600776..601096 1 NC_011244.1 hypothetical protein 601096 6919113 BRE_571 Borrelia recurrentis A1 hypothetical protein YP_002223021.1 600776 D 412418 CDS YP_002223022.1 203288007 6919114 601120..603261 1 NC_011244.1 chemotaxis histidine kinase 603261 cheA-1 6919114 cheA-1 Borrelia recurrentis A1 chemotaxis histidine kinase YP_002223022.1 601120 D 412418 CDS YP_002223023.1 203288008 6919115 603323..604474 1 NC_011244.1 protein-glutamate methylesterase 604474 cheB-2 6919115 cheB-2 Borrelia recurrentis A1 protein-glutamate methylesterase YP_002223023.1 603323 D 412418 CDS YP_002223024.1 203288009 6919116 604453..606246 1 NC_011244.1 hypothetical protein 606246 6919116 BRE_574 Borrelia recurrentis A1 hypothetical protein YP_002223024.1 604453 D 412418 CDS YP_002223025.1 203288010 6919117 606283..606657 1 NC_011244.1 chemotaxis response regulator 606657 cheY-2 6919117 cheY-2 Borrelia recurrentis A1 chemotaxis response regulator YP_002223025.1 606283 D 412418 CDS YP_002223026.1 203288011 6919118 606700..608043 1 NC_011244.1 putative peptidase , M20/M25/M40 family; hypothetical protein 608043 6919118 BRE_576 Borrelia recurrentis A1 hypothetical protein YP_002223026.1 606700 D 412418 CDS YP_002223027.1 203288012 6919120 complement(608142..608831) 1 NC_011244.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 608831 pyrH 6919120 pyrH Borrelia recurrentis A1 uridylate kinase YP_002223027.1 608142 R 412418 CDS YP_002223028.1 203288013 6919121 609048..610112 1 NC_011244.1 glycosyl transferase 610112 lgtD 6919121 lgtD Borrelia recurrentis A1 glycosyl transferase YP_002223028.1 609048 D 412418 CDS YP_002223029.1 203288014 6919122 610174..610995 1 NC_011244.1 ABC transporter, ATP-binding protein 610995 6919122 BRE_580 Borrelia recurrentis A1 ABC transporter, ATP-binding protein YP_002223029.1 610174 D 412418 CDS YP_002223030.1 203288015 6919123 610988..611869 1 NC_011244.1 LEUCINE_ZIPPER motif (Prosite); hypothetical protein 611869 6919123 BRE_581 Borrelia recurrentis A1 hypothetical protein YP_002223030.1 610988 D 412418 CDS YP_002223031.1 203288016 6919124 612097..613752 1 NC_011244.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 613752 pyrG 6919124 pyrG Borrelia recurrentis A1 CTP synthetase YP_002223031.1 612097 D 412418 CDS YP_002223032.1 203288017 6919125 613815..614420 1 NC_011244.1 hypothetical protein 614420 6919125 BRE_583 Borrelia recurrentis A1 hypothetical protein YP_002223032.1 613815 D 412418 CDS YP_002223033.1 203288018 6919126 614529..615704 1 NC_011244.1 methyl-accepting chemotaxis protein 615704 mcp-1 6919126 mcp-1 Borrelia recurrentis A1 methyl-accepting chemotaxis protein YP_002223033.1 614529 D 412418 CDS YP_002223034.1 203288019 6919127 615828..619262 1 NC_011244.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 619262 dnaE 6919127 dnaE Borrelia recurrentis A1 DNA polymerase III subunit alpha YP_002223034.1 615828 D 412418 CDS YP_002223035.1 203288020 6919128 619274..619846 1 NC_011244.1 hypothetical protein 619846 6919128 BRE_586 Borrelia recurrentis A1 hypothetical protein YP_002223035.1 619274 D 412418 CDS YP_002223036.1 203288021 6919129 619856..621919 1 NC_011244.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 621919 recG 6919129 recG Borrelia recurrentis A1 ATP-dependent DNA helicase RecG YP_002223036.1 619856 D 412418 CDS YP_002223037.1 203288022 6919130 complement(621906..622763) 1 NC_011244.1 carboxypeptidase, putative 622763 6919130 BRE_588 Borrelia recurrentis A1 carboxypeptidase, putative YP_002223037.1 621906 R 412418 CDS YP_002223038.1 203288023 6919131 623204..624547 1 NC_011244.1 hypothetical protein 624547 6919131 BRE_589 Borrelia recurrentis A1 hypothetical protein YP_002223038.1 623204 D 412418 CDS YP_002223039.1 203288024 6919132 624572..625927 1 NC_011244.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase 625927 murD 6919132 murD Borrelia recurrentis A1 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002223039.1 624572 D 412418 CDS YP_002223040.1 203288025 6919133 complement(625924..626973) 1 NC_011244.1 FemA protein 626973 femA 6919133 femA Borrelia recurrentis A1 FemA protein YP_002223040.1 625924 R 412418 CDS YP_002223041.1 203288026 6919134 complement(626995..629175) 1 NC_011244.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 629175 metG 6919134 metG Borrelia recurrentis A1 methionyl-tRNA synthetase YP_002223041.1 626995 R 412418 CDS YP_002223042.1 203288027 6919135 629287..630357 1 NC_011244.1 phosphate acetyltransferase 630357 pta 6919135 pta Borrelia recurrentis A1 phosphate acetyltransferase YP_002223042.1 629287 D 412418 CDS YP_002223043.1 203288028 6919136 complement(630340..631164) 1 NC_011244.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 631164 ksgA 6919136 ksgA Borrelia recurrentis A1 dimethyladenosine transferase YP_002223043.1 630340 R 412418 CDS YP_002223044.1 203288029 6919137 complement(631199..632596) 1 NC_011244.1 competence locus E, putative 632596 6919137 BRE_595 Borrelia recurrentis A1 competence locus E, putative YP_002223044.1 631199 R 412418 CDS YP_002223045.1 203288030 6919138 632595..633320 1 NC_011244.1 hypothetical protein 633320 6919138 BRE_596 Borrelia recurrentis A1 hypothetical protein YP_002223045.1 632595 D 412418 CDS YP_002223046.1 203288031 6919139 633330..635261 1 NC_011244.1 long-chain-fatty-acid CoA ligase 635261 6919139 BRE_597 Borrelia recurrentis A1 long-chain-fatty-acid CoA ligase YP_002223046.1 633330 D 412418 CDS YP_002223047.1 203288032 6919140 complement(635293..637050) 1 NC_011244.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 637050 argS 6919140 argS Borrelia recurrentis A1 arginyl-tRNA synthetase YP_002223047.1 635293 R 412418 CDS YP_002223048.1 203288033 6919141 complement(637043..637621) 1 NC_011244.1 hypothetical protein 637621 6919141 BRE_599 Borrelia recurrentis A1 hypothetical protein YP_002223048.1 637043 R 412418 CDS YP_002223049.1 203288034 6919142 complement(637637..639853) 1 NC_011244.1 methyl-accepting chemotaxis protein 639853 mcp-2 6919142 mcp-2 Borrelia recurrentis A1 methyl-accepting chemotaxis protein YP_002223049.1 637637 R 412418 CDS YP_002223050.1 203288035 6919143 640009..642249 1 NC_011244.1 methyl-accepting chemotaxis protein 642249 mcp-3 6919143 mcp-3 Borrelia recurrentis A1 methyl-accepting chemotaxis protein YP_002223050.1 640009 D 412418 CDS YP_002223051.1 203288036 6919144 complement(642251..643204) 1 NC_011244.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 643204 murB 6919144 murB Borrelia recurrentis A1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002223051.1 642251 R 412418 CDS YP_002223052.1 203288037 6919145 643358..644815 1 NC_011244.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 644815 cysS 6919145 cysS Borrelia recurrentis A1 cysteinyl-tRNA synthetase YP_002223052.1 643358 D 412418 CDS YP_002223053.1 203288038 6919146 644819..646372 1 NC_011244.1 hypothetical protein 646372 6919146 BRE_604 Borrelia recurrentis A1 hypothetical protein YP_002223053.1 644819 D 412418 CDS YP_002223054.1 203288039 6919147 646362..647615 1 NC_011244.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 647615 glyA 6919147 glyA Borrelia recurrentis A1 serine hydroxymethyltransferase YP_002223054.1 646362 D 412418 CDS YP_002223055.1 203288040 6919148 647630..648394 1 NC_011244.1 chaperone protein DnaJ 648394 dnaJ 6919148 dnaJ Borrelia recurrentis A1 chaperone protein DnaJ YP_002223055.1 647630 D 412418 CDS YP_002223056.1 203288041 6919149 complement(648492..650330) 1 NC_011244.1 membrane-associated protein P66 650330 6919149 BRE_607 Borrelia recurrentis A1 membrane-associated protein P66 YP_002223056.1 648492 R 412418 CDS YP_002223057.1 203288042 6919150 complement(650554..652089) 1 NC_011244.1 L-lactate permease 652089 lctP 6919150 lctP Borrelia recurrentis A1 L-lactate permease YP_002223057.1 650554 R 412418 CDS YP_002223058.1 203288043 6919151 652059..653060 1 NC_011244.1 serine-type D-Ala-D-Ala carboxypeptidase 653060 dacA 6919151 dacA Borrelia recurrentis A1 serine-type D-Ala-D-Ala carboxypeptidase YP_002223058.1 652059 D 412418 CDS YP_002223059.1 203288044 6919152 653314..653817 1 NC_011244.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 653817 6919152 BRE_610 Borrelia recurrentis A1 chemoreceptor glutamine deamidase CheD YP_002223059.1 653314 D 412418 CDS YP_002223060.1 203288045 6919153 653996..655417 1 NC_011244.1 aminoacyl-histidine dipeptidase 655417 pepD 6919153 pepD Borrelia recurrentis A1 aminoacyl-histidine dipeptidase YP_002223060.1 653996 D 412418 CDS YP_002223061.1 203288046 6919158 655947..657293 1 NC_011244.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 657293 tig 6919158 tig Borrelia recurrentis A1 trigger factor YP_002223061.1 655947 D 412418 CDS YP_002223062.1 203288047 6919159 657293..657892 1 NC_011244.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 657892 clpP 6919159 clpP Borrelia recurrentis A1 ATP-dependent Clp protease proteolytic subunit YP_002223062.1 657293 D 412418 CDS YP_002223063.1 203288048 6919160 657915..659204 1 NC_011244.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 659204 clpX 6919160 clpX Borrelia recurrentis A1 ATP-dependent protease ATP-binding subunit ClpX YP_002223063.1 657915 D 412418 CDS YP_002223064.1 203288049 6919161 659149..661587 1 NC_011244.1 ATP-dependent protease LA 661587 lon-2 6919161 lon-2 Borrelia recurrentis A1 ATP-dependent protease LA YP_002223064.1 659149 D 412418 CDS YP_002223065.1 203288050 6919162 complement(661797..662423) 1 NC_011244.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 662423 rpsD 6919162 rpsD Borrelia recurrentis A1 30S ribosomal protein S4 YP_002223065.1 661797 R 412418 CDS YP_002223066.1 203288051 6919164 complement(662571..663839) 1 NC_011244.1 2 amidation motifs (Prosite); hypothetical protein 663839 6919164 BRE_622 Borrelia recurrentis A1 hypothetical protein YP_002223066.1 662571 R 412418 CDS YP_002223067.1 203288052 6919165 663941..664324 1 NC_011244.1 hypothetical protein 664324 6919165 BRE_623 Borrelia recurrentis A1 hypothetical protein YP_002223067.1 663941 D 412418 CDS YP_002223068.1 203288053 6919166 complement(664360..664815) 1 NC_011244.1 cytidine deaminase 664815 cdd 6919166 cdd Borrelia recurrentis A1 cytidine deaminase YP_002223068.1 664360 R 412418 CDS YP_002223069.1 203288054 6919167 664949..665908 1 NC_011244.1 hypothetical protein 665908 6919167 BRE_625 Borrelia recurrentis A1 hypothetical protein YP_002223069.1 664949 D 412418 CDS YP_002223070.1 203288055 6919168 complement(665898..667553) 1 NC_011244.1 beta-glucosidase, putative 667553 6919168 BRE_626 Borrelia recurrentis A1 beta-glucosidase, putative YP_002223070.1 665898 R 412418 CDS YP_002223071.1 203288056 6919170 667864..668409 1 NC_011244.1 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein 668409 thiJ 6919170 thiJ Borrelia recurrentis A1 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein YP_002223071.1 667864 D 412418 CDS YP_002223072.1 203288057 6919171 complement(668503..669729) 1 NC_011244.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 669729 ackA 6919171 ackA Borrelia recurrentis A1 acetate kinase YP_002223072.1 668503 R 412418 CDS YP_002223073.1 203288058 6919172 complement(669740..673117) 1 NC_011244.1 transcription-repair coupling factor 673117 mfd 6919172 mfd Borrelia recurrentis A1 transcription-repair coupling factor YP_002223073.1 669740 R 412418 CDS YP_002223074.1 203288059 6919173 673216..674178 1 NC_011244.1 hypothetical protein 674178 6919173 BRE_631 Borrelia recurrentis A1 hypothetical protein YP_002223074.1 673216 D 412418 CDS YP_002223075.1 203288060 6919174 674114..676213 1 NC_011244.1 N-acetylmuramoyl-L-alanine amidase, putative 676213 6919174 BRE_632 Borrelia recurrentis A1 N-acetylmuramoyl-L-alanine amidase, putative YP_002223075.1 674114 D 412418 CDS YP_002223076.1 203288061 6919176 complement(676903..678171) 1 NC_011244.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 678171 pepX 6919176 pepX Borrelia recurrentis A1 putative aminopeptidase 2 YP_002223076.1 676903 R 412418 CDS YP_002223077.1 203288062 6919177 678275..679000 1 NC_011244.1 putative lipoprotein 679000 6919177 BRE_635 Borrelia recurrentis A1 putative lipoprotein YP_002223077.1 678275 D 412418 CDS YP_002223078.1 203288063 6919178 complement(679044..680903) 1 NC_011244.1 PTS system, fructose-specific IIABC component 680903 fruA-2 6919178 fruA-2 Borrelia recurrentis A1 PTS system, fructose-specific IIABC component YP_002223078.1 679044 R 412418 CDS YP_002223079.1 203288064 6919179 681058..681975 1 NC_011244.1 1-phosphofructokinase 681975 fruK 6919179 fruK Borrelia recurrentis A1 1-phosphofructokinase YP_002223079.1 681058 D 412418 CDS YP_002223080.1 203288065 6919181 complement(682168..683994) 1 NC_011244.1 exodeoxyribonuclease V, alpha chain 683994 recD 6919181 recD Borrelia recurrentis A1 exodeoxyribonuclease V, alpha chain YP_002223080.1 682168 R 412418 CDS YP_002223081.1 203288066 6919182 complement(684003..687446) 1 NC_011244.1 exodeoxyribonuclease V, beta chain 687446 recB 6919182 recB Borrelia recurrentis A1 exodeoxyribonuclease V, beta chain YP_002223081.1 684003 R 412418 CDS YP_002223082.1 203288067 6919183 complement(687453..690665) 1 NC_011244.1 exodeoxyribonuclease V, gamma chain 690665 recC 6919183 recC Borrelia recurrentis A1 exodeoxyribonuclease V, gamma chain YP_002223082.1 687453 R 412418 CDS YP_002223083.1 203288068 6919184 complement(690670..692115) 1 NC_011244.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 692115 6919184 BRE_642 Borrelia recurrentis A1 nicotinate phosphoribosyltransferase YP_002223083.1 690670 R 412418 CDS YP_002223084.1 203288069 6919185 692286..693719 1 NC_011244.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 693719 zwf 6919185 zwf Borrelia recurrentis A1 glucose-6-phosphate 1-dehydrogenase YP_002223084.1 692286 D 412418 CDS YP_002223085.1 203288070 6919186 694644..695969 1 NC_011244.1 Na+/H+ antiporter 695969 nhaC-2 6919186 nhaC-2 Borrelia recurrentis A1 Na+/H+ antiporter YP_002223085.1 694644 D 412418 CDS YP_002223086.1 203288071 6919187 complement(696001..697056) 1 NC_011244.1 Probable lipoprotein (SpLip); spermidine/putrescine ABC transporter, binding periplasmic protein 697056 potD 6919187 potD Borrelia recurrentis A1 spermidine/putrescine ABC transporter, binding periplasmic protein YP_002223086.1 696001 R 412418 CDS YP_002223087.1 203288072 6919188 complement(697068..697859) 1 NC_011244.1 spermidine/putrescine ABC transporter, permease protein 697859 potC 6919188 potC Borrelia recurrentis A1 spermidine/putrescine ABC transporter, permease protein YP_002223087.1 697068 R 412418 CDS YP_002223088.1 203288073 6919189 complement(697869..698672) 1 NC_011244.1 spermidine/putrescine ABC transporter, permease protein 698672 potB 6919189 potB Borrelia recurrentis A1 spermidine/putrescine ABC transporter, permease protein YP_002223088.1 697869 R 412418 CDS YP_002223089.1 203288074 6919190 complement(698678..699721) 1 NC_011244.1 spermidine/putrescine ABC transporter, ATP-binding protein 699721 potA 6919190 potA Borrelia recurrentis A1 spermidine/putrescine ABC transporter, ATP-binding protein YP_002223089.1 698678 R 412418 CDS YP_002223090.1 203288075 6919191 complement(699808..700683) 1 NC_011244.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 700683 rbgA 6919191 rbgA Borrelia recurrentis A1 ribosomal biogenesis GTPase YP_002223090.1 699808 R 412418 CDS YP_002223091.1 203288076 6919192 700835..701500 1 NC_011244.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 701500 6919192 BRE_650 Borrelia recurrentis A1 N-acetylmannosamine-6-phosphate 2-epimerase YP_002223091.1 700835 D 412418 CDS YP_002223092.1 203288077 6919193 701540..703099 1 NC_011244.1 PTS system, glucose-specific IIBC component 703099 ptsG 6919193 ptsG Borrelia recurrentis A1 PTS system, glucose-specific IIBC component YP_002223092.1 701540 D 412418 CDS YP_002223093.1 203288078 6919194 complement(703128..704114) 1 NC_011244.1 hypothetical protein 704114 6919194 BRE_652 Borrelia recurrentis A1 hypothetical protein YP_002223093.1 703128 R 412418 CDS YP_002223094.1 203288079 6919195 complement(704127..704645) 1 NC_011244.1 ferric uptake regulation protein 704645 fur 6919195 fur Borrelia recurrentis A1 ferric uptake regulation protein YP_002223094.1 704127 R 412418 CDS YP_002223095.1 203288080 6919196 complement(704737..706431) 1 NC_011244.1 AMIDATION motif (Prosite); serine/threonine kinase, putative 706431 6919196 BRE_654 Borrelia recurrentis A1 serine/threonine kinase, putative YP_002223095.1 704737 R 412418 CDS YP_002223096.1 203288081 6919197 706652..708286 1 NC_011244.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 708286 groEL 6919197 groEL Borrelia recurrentis A1 chaperonin GroEL YP_002223096.1 706652 D 412418 CDS YP_002223097.1 203288082 6919198 708347..708643 1 NC_011244.1 hypothetical protein 708643 6919198 BRE_656 Borrelia recurrentis A1 hypothetical protein YP_002223097.1 708347 D 412418 CDS YP_002223098.1 203288083 6919199 708659..708982 1 NC_011244.1 preprotein translocase YajC subunit 708982 yajC 6919199 yajC Borrelia recurrentis A1 preprotein translocase YajC subunit YP_002223098.1 708659 D 412418 CDS YP_002223099.1 203288084 6919200 709063..710826 1 NC_011244.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 710826 secD 6919200 secD Borrelia recurrentis A1 preprotein translocase subunit SecD YP_002223099.1 709063 D 412418 CDS YP_002223100.1 203288085 6919201 710810..711706 1 NC_011244.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 711706 secF 6919201 secF Borrelia recurrentis A1 preprotein translocase subunit SecF YP_002223100.1 710810 D 412418 CDS YP_002223101.1 203288086 6919202 711730..712881 1 NC_011244.1 hypothetical protein 712881 6919202 BRE_660 Borrelia recurrentis A1 hypothetical protein YP_002223101.1 711730 D 412418 CDS YP_002223102.1 203288087 6919203 complement(712878..713726) 1 NC_011244.1 heat shock protein 713726 dnaJ-2 6919203 dnaJ-2 Borrelia recurrentis A1 heat shock protein YP_002223102.1 712878 R 412418 CDS YP_002223103.1 203288088 6919204 713847..714986 1 NC_011244.1 HemN-related protein 714986 6919204 BRE_662 Borrelia recurrentis A1 HemN-related protein YP_002223103.1 713847 D 412418 CDS YP_002223104.1 203288089 6919205 complement(714973..715659) 1 NC_011244.1 ribose 5-phosphate isomerase A 715659 rpi 6919205 rpi Borrelia recurrentis A1 ribose 5-phosphate isomerase A YP_002223104.1 714973 R 412418 CDS YP_002223105.1 203288090 6919206 715882..716634 1 NC_011244.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 716634 gpmA 6919206 gpmA Borrelia recurrentis A1 phosphoglyceromutase YP_002223105.1 715882 D 412418 CDS YP_002223106.1 203288091 6919207 complement(716720..718318) 1 NC_011244.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 718318 lysK 6919207 lysK Borrelia recurrentis A1 lysyl-tRNA synthetase YP_002223106.1 716720 R 412418 CDS YP_002223107.1 203288092 6919208 complement(718368..719240) 1 NC_011244.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 719240 era 6919208 era Borrelia recurrentis A1 GTP-binding protein Era YP_002223107.1 718368 R 412418 CDS YP_002223108.1 203288093 6919209 719337..719684 1 NC_011244.1 hypothetical protein 719684 6919209 BRE_667 Borrelia recurrentis A1 hypothetical protein YP_002223108.1 719337 D 412418 CDS YP_002223109.1 203288094 6919210 719697..720104 1 NC_011244.1 hypothetical protein 720104 6919210 BRE_668 Borrelia recurrentis A1 hypothetical protein YP_002223109.1 719697 D 412418 CDS YP_002223110.1 203288095 6919211 720101..720535 1 NC_011244.1 Possible lipoprotein (SpLip); hypothetical protein 720535 6919211 BRE_669 Borrelia recurrentis A1 hypothetical protein YP_002223110.1 720101 D 412418 CDS YP_002223111.1 203288096 6919212 complement(720537..721196) 1 NC_011244.1 Probable lipoprotein (SpLip); hypothetical protein 721196 6919212 BRE_670 Borrelia recurrentis A1 hypothetical protein YP_002223111.1 720537 R 412418 CDS YP_002223112.1 203288097 6919213 721242..722201 1 NC_011244.1 hypothetical protein 722201 6919213 BRE_671 Borrelia recurrentis A1 hypothetical protein YP_002223112.1 721242 D 412418 CDS YP_002223113.1 203288098 6919214 722164..723189 1 NC_011244.1 N-acetylmuramoyl-L-alanine amidase 723189 6919214 BRE_672 Borrelia recurrentis A1 N-acetylmuramoyl-L-alanine amidase YP_002223113.1 722164 D 412418 CDS YP_002223114.1 203288099 6919215 723170..723718 1 NC_011244.1 hypothetical protein 723718 6919215 BRE_673 Borrelia recurrentis A1 hypothetical protein YP_002223114.1 723170 D 412418 CDS YP_002223115.1 203288100 6919216 723795..724844 1 NC_011244.1 flagellar filament outer layer protein 724844 flaA 6919216 flaA Borrelia recurrentis A1 flagellar filament outer layer protein YP_002223115.1 723795 D 412418 CDS YP_002223116.1 203288101 6919217 724915..727506 1 NC_011244.1 chemotaxis histidine kinase 727506 cheA-2 6919217 cheA-2 Borrelia recurrentis A1 chemotaxis histidine kinase YP_002223116.1 724915 D 412418 CDS YP_002223117.1 203288102 6919218 727512..728909 1 NC_011244.1 purine-binding chemotaxis protein CheW 728909 cheW-3 6919218 cheW-3 Borrelia recurrentis A1 purine-binding chemotaxis protein CheW YP_002223117.1 727512 D 412418 CDS YP_002223118.1 203288103 6919219 728921..729406 1 NC_011244.1 chemotaxis protein CheX 729406 cheX 6919219 cheX Borrelia recurrentis A1 chemotaxis protein CheX YP_002223118.1 728921 D 412418 CDS YP_002223119.1 203288104 6919220 729455..729895 1 NC_011244.1 chemotaxis response regulator 729895 cheY3 6919220 cheY3 Borrelia recurrentis A1 chemotaxis response regulator YP_002223119.1 729455 D 412418 CDS YP_002223120.1 203288105 6919221 complement(729908..730423) 1 NC_011244.1 hypothetical protein 730423 6919221 BRE_679 Borrelia recurrentis A1 hypothetical protein YP_002223120.1 729908 R 412418 CDS YP_002223121.1 203288106 6919222 complement(730420..731469) 1 NC_011244.1 hypothetical protein 731469 6919222 BRE_680 Borrelia recurrentis A1 hypothetical protein YP_002223121.1 730420 R 412418 CDS YP_002223122.1 203288107 6919223 complement(731463..732326) 1 NC_011244.1 hypothetical protein 732326 6919223 BRE_681 Borrelia recurrentis A1 hypothetical protein YP_002223122.1 731463 R 412418 CDS YP_002223123.1 203288108 6919224 complement(732323..733009) 1 NC_011244.1 phosphoglycolate phosphatase 733009 gph 6919224 gph Borrelia recurrentis A1 phosphoglycolate phosphatase YP_002223123.1 732323 R 412418 CDS YP_002223124.1 203288109 6919225 733193..734776 1 NC_011244.1 ribose/galactose ABC transporter, ATP-binding protein 734776 mglA 6919225 mglA Borrelia recurrentis A1 ribose/galactose ABC transporter, ATP-binding protein YP_002223124.1 733193 D 412418 CDS YP_002223125.1 203288110 6919226 734780..735928 1 NC_011244.1 ribose/galactose ABC transporter, permease protein 735928 rbsC-1 6919226 rbsC-1 Borrelia recurrentis A1 ribose/galactose ABC transporter, permease protein YP_002223125.1 734780 D 412418 CDS YP_002223126.1 203288111 6919227 735900..736826 1 NC_011244.1 ribose/galactose ABC transporter, permease protein 736826 rbsC-2 6919227 rbsC-2 Borrelia recurrentis A1 ribose/galactose ABC transporter, permease protein YP_002223126.1 735900 D 412418 CDS YP_002223127.1 203288112 6919228 736994..739201 1 NC_011244.1 methyl-accepting chemotaxis protein 739201 mcp-4 6919228 mcp-4 Borrelia recurrentis A1 methyl-accepting chemotaxis protein YP_002223127.1 736994 D 412418 CDS YP_002223128.1 203288113 6919229 739231..741138 1 NC_011244.1 methyl-accepting chemotaxis protein 741138 mcp-5 6919229 mcp-5 Borrelia recurrentis A1 methyl-accepting chemotaxis protein YP_002223128.1 739231 D 412418 CDS YP_002223129.1 203288114 6919230 complement(741194..742258) 1 NC_011244.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 742258 mnmA 6919230 mnmA Borrelia recurrentis A1 tRNA-specific 2-thiouridylase MnmA YP_002223129.1 741194 R 412418 CDS YP_002223130.1 203288115 6919231 742356..743582 1 NC_011244.1 3-hydroxy-3-methylglutaryl-CoA synthase 743582 6919231 BRE_689 Borrelia recurrentis A1 3-hydroxy-3-methylglutaryl-CoA synthase YP_002223130.1 742356 D 412418 CDS YP_002223131.1 203288116 6919232 743551..744630 1 NC_011244.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 744630 6919232 BRE_690 Borrelia recurrentis A1 isopentenyl pyrophosphate isomerase YP_002223131.1 743551 D 412418 CDS YP_002223132.1 203288117 6919233 744620..745870 1 NC_011244.1 3-hydroxy-3-methylglutaryl-CoA reductase 745870 mvaA 6919233 mvaA Borrelia recurrentis A1 3-hydroxy-3-methylglutaryl-CoA reductase YP_002223132.1 744620 D 412418 CDS YP_002223133.1 203288118 6919234 745872..746813 1 NC_011244.1 mevalonate pyrophosphate decarboxylase 746813 mvaD 6919234 mvaD Borrelia recurrentis A1 mevalonate pyrophosphate decarboxylase YP_002223133.1 745872 D 412418 CDS YP_002223134.1 203288119 6919235 746801..747742 1 NC_011244.1 phosphomevalonate kinase, putative 747742 6919235 BRE_693 Borrelia recurrentis A1 phosphomevalonate kinase, putative YP_002223134.1 746801 D 412418 CDS YP_002223135.1 203288120 6919236 747743..748636 1 NC_011244.1 mevalonate kinase 748636 mvaK 6919236 mvaK Borrelia recurrentis A1 mevalonate kinase YP_002223135.1 747743 D 412418 CDS YP_002223136.1 203288121 6919238 complement(748888..749340) 1 NC_011244.1 Possible lipoprotein (SpLip); hypothetical protein 749340 6919238 BRE_696 Borrelia recurrentis A1 hypothetical protein YP_002223136.1 748888 R 412418 CDS YP_002223137.1 203288122 6919239 749410..749913 1 NC_011244.1 neutrophil activating protein 749913 napA_2 6919239 napA_2 Borrelia recurrentis A1 neutrophil activating protein YP_002223137.1 749410 D 412418 CDS YP_002223138.1 203288123 6919240 750044..752068 1 NC_011244.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 752068 fus-2 6919240 fus-2 Borrelia recurrentis A1 elongation factor G YP_002223138.1 750044 D 412418 CDS YP_002223139.1 203288124 6919241 752345..753553 1 NC_011244.1 xylose operon regulatory protein 753553 xylR-1 6919241 xylR-1 Borrelia recurrentis A1 xylose operon regulatory protein YP_002223139.1 752345 D 412418 CDS YP_002223140.1 203288125 6919242 753613..754962 1 NC_011244.1 signal recognition particle protein 754962 ffh 6919242 ffh Borrelia recurrentis A1 signal recognition particle protein YP_002223140.1 753613 D 412418 CDS YP_002223141.1 203288126 6919243 754959..755210 1 NC_011244.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 755210 rpsP 6919243 rpsP Borrelia recurrentis A1 30S ribosomal protein S16 YP_002223141.1 754959 D 412418 CDS YP_002223142.1 203288127 6919244 755220..755468 1 NC_011244.1 putative RNA-binding protein; amidation motif (Prosite); hypothetical protein 755468 6919244 BRE_702 Borrelia recurrentis A1 hypothetical protein YP_002223142.1 755220 D 412418 CDS YP_002223143.1 203288128 6919245 755472..755972 1 NC_011244.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 755972 rimM 6919245 rimM Borrelia recurrentis A1 16S rRNA-processing protein RimM YP_002223143.1 755472 D 412418 CDS YP_002223144.1 203288129 6919246 755969..756691 1 NC_011244.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 756691 trmD 6919246 trmD Borrelia recurrentis A1 tRNA (guanine-N(1)-)-methyltransferase YP_002223144.1 755969 D 412418 CDS YP_002223145.1 203288130 6919247 756666..757034 1 NC_011244.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 757034 rplS 6919247 rplS Borrelia recurrentis A1 50S ribosomal protein L19 YP_002223145.1 756666 D 412418 CDS YP_002223146.1 203288131 6919248 757965..758525 1 NC_011244.1 hypothetical protein 758525 6919248 BRE_706 Borrelia recurrentis A1 hypothetical protein YP_002223146.1 757965 D 412418 CDS YP_002223147.1 203288132 6919249 758528..759025 1 NC_011244.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 759025 coaD 6919249 coaD Borrelia recurrentis A1 phosphopantetheine adenylyltransferase YP_002223147.1 758528 D 412418 CDS YP_002223148.1 203288133 6919250 759077..759259 1 NC_011244.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 759259 rpmF 6919250 rpmF Borrelia recurrentis A1 50S ribosomal protein L32 YP_002223148.1 759077 D 412418 CDS YP_002223149.1 203288134 6919251 759261..759524 1 NC_011244.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 759524 acpP 6919251 acpP Borrelia recurrentis A1 acyl carrier protein YP_002223149.1 759261 D 412418 CDS YP_002223150.1 203288135 6919252 759530..760261 1 NC_011244.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 760261 rnc 6919252 rnc Borrelia recurrentis A1 ribonuclease III YP_002223150.1 759530 D 412418 CDS YP_002223151.1 203288136 6919253 complement(760233..761531) 1 NC_011244.1 tRNA nucleotidyltransferase (CCA-adding enzyme) 761531 papS 6919253 papS Borrelia recurrentis A1 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_002223151.1 760233 R 412418 CDS YP_002223152.1 203288137 6919254 761696..763348 1 NC_011244.1 LEUCINE_ZIPPER motif (Prosite); hypothetical protein 763348 6919254 BRE_712 Borrelia recurrentis A1 hypothetical protein YP_002223152.1 761696 D 412418 CDS YP_002223153.1 203288138 6919255 763355..763672 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 763672 6919255 BRE_713 Borrelia recurrentis A1 hypothetical protein YP_002223153.1 763355 D 412418 CDS YP_002223154.1 203288139 6919258 764139..765173 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 765173 6919258 BRE_716 Borrelia recurrentis A1 hypothetical protein YP_002223154.1 764139 D 412418 CDS YP_002223155.1 203288140 6919259 765181..766956 1 NC_011244.1 DNA primase 766956 dnaG 6919259 dnaG Borrelia recurrentis A1 DNA primase YP_002223155.1 765181 D 412418 CDS YP_002223156.1 203288141 6919260 766949..768841 1 NC_011244.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 768841 rpoD 6919260 rpoD Borrelia recurrentis A1 RNA polymerase sigma factor RpoD YP_002223156.1 766949 D 412418 CDS YP_002223157.1 203288142 6919261 768838..769614 1 NC_011244.1 hypothetical protein 769614 6919261 BRE_719 Borrelia recurrentis A1 hypothetical protein YP_002223157.1 768838 D 412418 CDS YP_002223158.1 203288143 6919262 770009..770974 1 NC_011244.1 hypothetical protein 770974 6919262 BRE_720 Borrelia recurrentis A1 hypothetical protein YP_002223158.1 770009 D 412418 CDS YP_002223159.1 203288144 6919263 770987..772036 1 NC_011244.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 772036 mreB-1 6919263 mreB-1 Borrelia recurrentis A1 rod shape-determining protein MreB YP_002223159.1 770987 D 412418 CDS YP_002223160.1 203288145 6919264 772039..772884 1 NC_011244.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 772884 mreC 6919264 mreC Borrelia recurrentis A1 rod shape-determining protein MreC YP_002223160.1 772039 D 412418 CDS YP_002223161.1 203288146 6919265 772881..773363 1 NC_011244.1 hypothetical protein 773363 6919265 BRE_723 Borrelia recurrentis A1 hypothetical protein YP_002223161.1 772881 D 412418 CDS YP_002223162.1 203288147 6919266 773369..775168 1 NC_011244.1 penicillin-binding protein 775168 pbp-2 6919266 pbp-2 Borrelia recurrentis A1 penicillin-binding protein YP_002223162.1 773369 D 412418 CDS YP_002223163.1 203288148 6919267 775172..776491 1 NC_011244.1 rod shape-determining protein 776491 mreB-2 6919267 mreB-2 Borrelia recurrentis A1 rod shape-determining protein YP_002223163.1 775172 D 412418 CDS YP_002223164.1 203288149 6919268 776649..778400 1 NC_011244.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 778400 thrS 6919268 thrS Borrelia recurrentis A1 threonyl-tRNA synthetase YP_002223164.1 776649 D 412418 CDS YP_002223165.1 203288150 6919269 778402..779025 1 NC_011244.1 Possible lipoprotein (SpLip); CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 779025 6919269 BRE_727 Borrelia recurrentis A1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002223165.1 778402 D 412418 CDS YP_002223166.1 203288151 6919270 779006..780454 1 NC_011244.1 hypothetical protein 780454 6919270 BRE_728 Borrelia recurrentis A1 hypothetical protein YP_002223166.1 779006 D 412418 CDS YP_002223167.1 203288152 6919271 complement(780431..780952) 1 NC_011244.1 adenylyl cyclase, CyaB-type, putative 780952 6919271 BRE_729 Borrelia recurrentis A1 adenylyl cyclase, CyaB-type, putative YP_002223167.1 780431 R 412418 CDS YP_002223168.1 203288153 6919272 781043..782362 1 NC_011244.1 K transport protein 782362 ntpJ 6919272 ntpJ Borrelia recurrentis A1 K transport protein YP_002223168.1 781043 D 412418 CDS YP_002223169.1 203288154 6919273 782369..783151 1 NC_011244.1 hypothetical protein 783151 6919273 BRE_731 Borrelia recurrentis A1 hypothetical protein YP_002223169.1 782369 D 412418 CDS YP_002223170.1 203288155 6919274 783164..784135 1 NC_011244.1 MinD-related ATP-binding protein 784135 ylxH-3 6919274 ylxH-3 Borrelia recurrentis A1 MinD-related ATP-binding protein YP_002223170.1 783164 D 412418 CDS YP_002223171.1 203288156 6919275 784172..785515 1 NC_011244.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 785515 pfk 6919275 pfk Borrelia recurrentis A1 diphosphate--fructose-6-phosphate 1-phosphotransferase YP_002223171.1 784172 D 412418 CDS YP_002223172.1 203288157 6919276 complement(785541..786872) 1 NC_011244.1 CoADR; specific for coenzyme A disulfide; requires NADH; involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide; coenzyme A disulfide reductase 786872 nox 6919276 nox Borrelia recurrentis A1 coenzyme A disulfide reductase YP_002223172.1 785541 R 412418 CDS YP_002223173.1 203288158 6919277 complement(786885..788267) 1 NC_011244.1 glutamate transporter 788267 gltP 6919277 gltP Borrelia recurrentis A1 glutamate transporter YP_002223173.1 786885 R 412418 CDS YP_002223174.1 203288159 6919278 complement(788311..789885) 1 NC_011244.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 789885 pgi 6919278 pgi Borrelia recurrentis A1 glucose-6-phosphate isomerase YP_002223174.1 788311 R 412418 CDS YP_002223175.1 203288160 6919279 complement(789922..790326) 1 NC_011244.1 hypothetical protein 790326 6919279 BRE_737 Borrelia recurrentis A1 hypothetical protein YP_002223175.1 789922 R 412418 CDS YP_002223176.1 203288161 6919280 complement(790333..793110) 1 NC_011244.1 penicillin-binding protein 793110 pbp-3 6919280 pbp-3 Borrelia recurrentis A1 penicillin-binding protein YP_002223176.1 790333 R 412418 CDS YP_002223177.1 203288162 6919281 793600..794388 1 NC_011244.1 hypothetical protein 794388 6919281 BRE_739 Borrelia recurrentis A1 hypothetical protein YP_002223177.1 793600 D 412418 CDS YP_002223178.1 203288163 6919282 794372..795484 1 NC_011244.1 TPR domain protein 795484 6919282 BRE_740 Borrelia recurrentis A1 TPR domain protein YP_002223178.1 794372 D 412418 CDS YP_002223179.1 203288164 6919283 complement(795492..796496) 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 796496 6919283 BRE_741 Borrelia recurrentis A1 hypothetical protein YP_002223179.1 795492 R 412418 CDS YP_002223180.1 203288165 6919284 796596..797426 1 NC_011244.1 rare lipoprotein A 797426 rlpA 6919284 rlpA Borrelia recurrentis A1 rare lipoprotein A YP_002223180.1 796596 D 412418 CDS YP_002223181.1 203288166 6919285 complement(797416..799470) 1 NC_011244.1 ATP-dependent helicase, DinG family 799470 6919285 BRE_743 Borrelia recurrentis A1 ATP-dependent helicase, DinG family YP_002223181.1 797416 R 412418 CDS YP_002223182.1 203288167 6919286 799704..800723 1 NC_011244.1 histidine phosphokinase/phophatase, putative 800723 6919286 BRE_744 Borrelia recurrentis A1 histidine phosphokinase/phophatase, putative YP_002223182.1 799704 D 412418 CDS YP_002223183.1 203288168 6919287 800723..803356 1 NC_011244.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 803356 valS 6919287 valS Borrelia recurrentis A1 valyl-tRNA synthetase YP_002223183.1 800723 D 412418 CDS YP_002223184.1 203288169 6919289 complement(804257..804535) 1 NC_011244.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 804535 groES 6919289 groES Borrelia recurrentis A1 co-chaperonin GroES YP_002223184.1 804257 R 412418 CDS YP_002223185.1 203288170 6919290 804673..806304 1 NC_011244.1 ABC transporter, ATP-binding protein 806304 6919290 BRE_748 Borrelia recurrentis A1 ABC transporter, ATP-binding protein YP_002223185.1 804673 D 412418 CDS YP_002223186.1 203288171 6919291 806327..808012 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 808012 6919291 BRE_749 Borrelia recurrentis A1 hypothetical protein YP_002223186.1 806327 D 412418 CDS YP_002223187.1 203288172 6919292 808141..810390 1 NC_011244.1 antigen, p83/100 810390 6919292 BRE_750 Borrelia recurrentis A1 antigen, p83/100 YP_002223187.1 808141 D 412418 CDS YP_002223188.1 203288173 6919295 810730..811347 1 NC_011244.1 endonuclease III 811347 nth 6919295 nth Borrelia recurrentis A1 endonuclease III YP_002223188.1 810730 D 412418 CDS YP_002223189.1 203288174 6919296 complement(811355..812206) 1 NC_011244.1 oligopeptide ABC transporter, permease protein 812206 oppC-2 6919296 oppC-2 Borrelia recurrentis A1 oligopeptide ABC transporter, permease protein YP_002223189.1 811355 R 412418 CDS YP_002223190.1 203288175 6919297 complement(812206..813153) 1 NC_011244.1 oligopeptide ABC transporter, permease protein 813153 oppB-2 6919297 oppB-2 Borrelia recurrentis A1 oligopeptide ABC transporter, permease protein YP_002223190.1 812206 R 412418 CDS YP_002223191.1 203288176 6919298 complement(813189..813629) 1 NC_011244.1 hypothetical protein 813629 6919298 BRE_756 Borrelia recurrentis A1 hypothetical protein YP_002223191.1 813189 R 412418 CDS YP_002223192.1 203288177 6919299 813781..815352 1 NC_011244.1 uncharaterized conserved protein 815352 6919299 BRE_757 Borrelia recurrentis A1 uncharaterized conserved protein YP_002223192.1 813781 D 412418 CDS YP_002223193.1 203288178 6919300 complement(815862..816911) 1 NC_011244.1 hypothetical protein 816911 6919300 BRE_758 Borrelia recurrentis A1 hypothetical protein YP_002223193.1 815862 R 412418 CDS YP_002223194.1 203288179 6919301 complement(816871..818373) 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 818373 6919301 BRE_759 Borrelia recurrentis A1 hypothetical protein YP_002223194.1 816871 R 412418 CDS YP_002223195.1 203288180 6919302 complement(818381..819115) 1 NC_011244.1 putative ABC-2 type transport system permease protein 819115 6919302 BRE_760 Borrelia recurrentis A1 putative ABC-2 type transport system permease protein YP_002223195.1 818381 R 412418 CDS YP_002223196.1 203288181 6919303 complement(819112..820038) 1 NC_011244.1 putative ABC-2 type transport system ATP-binding protein 820038 6919303 BRE_761 Borrelia recurrentis A1 putative ABC-2 type transport system ATP-binding protein YP_002223196.1 819112 R 412418 CDS YP_002223197.1 203288182 6919304 complement(820060..821019) 1 NC_011244.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 821019 6919304 BRE_762 Borrelia recurrentis A1 ribonuclease Z YP_002223197.1 820060 R 412418 CDS YP_002223198.1 203288183 6919305 complement(821325..822404) 1 NC_011244.1 AMIDATION motif (Prosite); hypothetical protein 822404 6919305 BRE_763 Borrelia recurrentis A1 hypothetical protein YP_002223198.1 821325 R 412418 CDS YP_002223199.1 203288184 6919306 822555..823145 1 NC_011244.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 823145 clpP 6919306 clpP Borrelia recurrentis A1 ATP-dependent Clp protease proteolytic subunit YP_002223199.1 822555 D 412418 CDS YP_002223200.1 203288185 6919307 823087..823851 1 NC_011244.1 LEUCINE_ZIPPER motif (Prosite); Possible lipoprotein (SpLip); putative lipoprotein 823851 6919307 BRE_765 Borrelia recurrentis A1 putative lipoprotein YP_002223200.1 823087 D 412418 CDS YP_002223201.1 203288186 6919309 complement(823996..824862) 1 NC_011244.1 hypothetical protein 824862 6919309 BRE_767 Borrelia recurrentis A1 hypothetical protein YP_002223201.1 823996 R 412418 CDS YP_002223202.1 203288187 6919310 complement(824897..825226) 1 NC_011244.1 hypothetical protein 825226 6919310 BRE_768 Borrelia recurrentis A1 hypothetical protein YP_002223202.1 824897 R 412418 CDS YP_002223203.1 203288188 6919311 825327..826214 1 NC_011244.1 RGD motif (Prosite); hypothetical protein 826214 6919311 BRE_769 Borrelia recurrentis A1 hypothetical protein YP_002223203.1 825327 D 412418 CDS YP_002223204.1 203288189 6919312 complement(826429..827784) 1 NC_011244.1 response regulatory protein 827784 rrp-2 6919312 rrp-2 Borrelia recurrentis A1 response regulatory protein YP_002223204.1 826429 R 412418 CDS YP_002223205.1 203288190 6919313 complement(827777..828937) 1 NC_011244.1 sensory transduction histidine kinase, putative 828937 6919313 BRE_771 Borrelia recurrentis A1 sensory transduction histidine kinase, putative YP_002223205.1 827777 R 412418 CDS YP_002223206.1 203288191 6919314 complement(828937..829980) 1 NC_011244.1 DNA polymerase III gamma and tau subunit 829980 6919314 BRE_772 Borrelia recurrentis A1 DNA polymerase III gamma and tau subunit YP_002223206.1 828937 R 412418 CDS YP_002223207.1 203288192 6919315 complement(829998..830492) 1 NC_011244.1 colicin V production protein, putative 830492 6919315 BRE_773 Borrelia recurrentis A1 colicin V production protein, putative YP_002223207.1 829998 R 412418 CDS YP_002223208.1 203288193 6919316 complement(830461..831570) 1 NC_011244.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 831570 murG 6919316 murG Borrelia recurrentis A1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_002223208.1 830461 R 412418 CDS YP_002223209.1 203288194 6919317 complement(831700..832494) 1 NC_011244.1 pyridoxal kinase 832494 pdxK 6919317 pdxK Borrelia recurrentis A1 pyridoxal kinase YP_002223209.1 831700 R 412418 CDS YP_002223210.1 203288195 6919318 complement(832491..833507) 1 NC_011244.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 833507 gcp 6919318 gcp Borrelia recurrentis A1 putative DNA-binding/iron metalloprotein/AP endonuclease YP_002223210.1 832491 R 412418 CDS YP_002223211.1 203288196 6919319 complement(833476..834399) 1 NC_011244.1 hypothetical protein 834399 6919319 BRE_777 Borrelia recurrentis A1 hypothetical protein YP_002223211.1 833476 R 412418 CDS YP_002223212.1 203288197 6919320 complement(834445..835248) 1 NC_011244.1 RNA polymerase sigma factor 835248 rpoS 6919320 rpoS Borrelia recurrentis A1 RNA polymerase sigma factor YP_002223212.1 834445 R 412418 CDS YP_002223213.1 203288198 6919321 complement(835360..835692) 1 NC_011244.1 flagellum-specific muramidase 835692 flgJ 6919321 flgJ Borrelia recurrentis A1 flagellum-specific muramidase YP_002223213.1 835360 R 412418 CDS YP_002223214.1 203288199 6919322 complement(835695..836675) 1 NC_011244.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body P-ring protein 836675 flgI 6919322 flgI Borrelia recurrentis A1 flagellar basal body P-ring protein YP_002223214.1 835695 R 412418 CDS YP_002223215.1 203288200 6919323 complement(836871..837509) 1 NC_011244.1 hypothetical protein 837509 6919323 BRE_781 Borrelia recurrentis A1 hypothetical protein YP_002223215.1 836871 R 412418 CDS YP_002223216.1 203288201 6919324 complement(837506..838303) 1 NC_011244.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 838303 flgG 6919324 flgG Borrelia recurrentis A1 flagellar basal body rod protein FlgG YP_002223216.1 837506 R 412418 CDS YP_002223217.1 203288202 6919325 complement(838318..839193) 1 NC_011244.1 flagellar hook-basal body complex protein 839193 flhO 6919325 flhO Borrelia recurrentis A1 flagellar hook-basal body complex protein YP_002223217.1 838318 R 412418 CDS YP_002223218.1 203288203 6919326 839395..839967 1 NC_011244.1 hypothetical protein 839967 6919326 BRE_784 Borrelia recurrentis A1 hypothetical protein YP_002223218.1 839395 D 412418 CDS YP_002223219.1 203288204 6919327 839972..840532 1 NC_011244.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 840532 apt 6919327 apt Borrelia recurrentis A1 adenine phosphoribosyltransferase YP_002223219.1 839972 D 412418 CDS YP_002223220.1 203288205 6919328 840661..840981 1 NC_011244.1 50S ribosomal protein L21 840981 rplU 6919328 rplU Borrelia recurrentis A1 50S ribosomal protein L21 YP_002223220.1 840661 D 412418 CDS YP_002223221.1 203288206 6919329 840985..841317 1 NC_011244.1 hypothetical protein 841317 6919329 BRE_787 Borrelia recurrentis A1 hypothetical protein YP_002223221.1 840985 D 412418 CDS YP_002223222.1 203288207 6919330 841304..841549 1 NC_011244.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 841549 rpmA 6919330 rpmA Borrelia recurrentis A1 50S ribosomal protein L27 YP_002223222.1 841304 D 412418 CDS YP_002223223.1 203288208 6919331 841599..842582 1 NC_011244.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 842582 obgE 6919331 obgE Borrelia recurrentis A1 GTPase ObgE YP_002223223.1 841599 D 412418 CDS YP_002223224.1 203288209 6919332 842674..843249 1 NC_011244.1 nicotinate-nucleotide adenylyltransferase 843249 nadD 6919332 nadD Borrelia recurrentis A1 nicotinate-nucleotide adenylyltransferase YP_002223224.1 842674 D 412418 CDS YP_002223225.1 203288210 6919333 843250..844434 1 NC_011244.1 hypothetical protein 844434 6919333 BRE_791 Borrelia recurrentis A1 hypothetical protein YP_002223225.1 843250 D 412418 CDS YP_002223226.1 203288211 6919334 844400..844759 1 NC_011244.1 hypothetical protein 844759 6919334 BRE_792 Borrelia recurrentis A1 hypothetical protein YP_002223226.1 844400 D 412418 CDS YP_002223227.1 203288212 6919335 844858..845148 1 NC_011244.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 845148 6919335 BRE_793 Borrelia recurrentis A1 regulatory protein SpoVG YP_002223227.1 844858 D 412418 CDS YP_002223228.1 203288213 6919337 845313..845861 1 NC_011244.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 845861 ctc 6919337 ctc Borrelia recurrentis A1 50S ribosomal protein L25/general stress protein Ctc YP_002223228.1 845313 D 412418 CDS YP_002223229.1 203288214 6919338 845867..846433 1 NC_011244.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 846433 pth 6919338 pth Borrelia recurrentis A1 peptidyl-tRNA hydrolase YP_002223229.1 845867 D 412418 CDS YP_002223230.1 203288215 6919339 846430..847749 1 NC_011244.1 cell cycle protein 847749 6919339 BRE_797 Borrelia recurrentis A1 cell cycle protein YP_002223230.1 846430 D 412418 CDS YP_002223231.1 203288216 6919340 847746..849656 1 NC_011244.1 cell division protein 849656 ftsH 6919340 ftsH Borrelia recurrentis A1 cell division protein YP_002223231.1 847746 D 412418 CDS YP_002223232.1 203288217 6919341 849679..851157 1 NC_011244.1 hypothetical protein 851157 6919341 BRE_799 Borrelia recurrentis A1 hypothetical protein YP_002223232.1 849679 D 412418 CDS YP_002223233.1 203288218 6919342 851171..852811 1 NC_011244.1 Possible lipoprotein (SpLip); trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain 852811 6919342 BRE_800 Borrelia recurrentis A1 trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain YP_002223233.1 851171 D 412418 CDS YP_002223234.1 203288219 6919343 852817..853953 1 NC_011244.1 thymidine kinase 853953 tdk 6919343 tdk Borrelia recurrentis A1 thymidine kinase YP_002223234.1 852817 D 412418 CDS YP_002223235.1 203288220 6919344 complement(853961..854578) 1 NC_011244.1 hypothetical protein 854578 6919344 BRE_802 Borrelia recurrentis A1 hypothetical protein YP_002223235.1 853961 R 412418 CDS YP_002223236.1 203288221 6919345 complement(854611..855219) 1 NC_011244.1 thymidylate kinase 855219 tmk 6919345 tmk Borrelia recurrentis A1 thymidylate kinase YP_002223236.1 854611 R 412418 CDS YP_002223237.1 203288222 6919346 855294..859685 1 NC_011244.1 SERPIN motif (Prosite); hypothetical protein 859685 6919346 BRE_804 Borrelia recurrentis A1 hypothetical protein YP_002223237.1 855294 D 412418 CDS YP_002223238.1 203288223 6919347 859633..862155 1 NC_011244.1 outer membrane protein 862155 6919347 BRE_805 Borrelia recurrentis A1 outer membrane protein YP_002223238.1 859633 D 412418 CDS YP_002223239.1 203288224 6919348 862188..862706 1 NC_011244.1 hypothetical protein 862706 6919348 BRE_806 Borrelia recurrentis A1 hypothetical protein YP_002223239.1 862188 D 412418 CDS YP_002223240.1 203288225 6919349 complement(862737..863246) 1 NC_011244.1 hypothetical protein 863246 6919349 BRE_807 Borrelia recurrentis A1 hypothetical protein YP_002223240.1 862737 R 412418 CDS YP_002223241.1 203288226 6919350 863306..865894 1 NC_011244.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 865894 mutS 6919350 mutS Borrelia recurrentis A1 DNA mismatch repair protein MutS YP_002223241.1 863306 D 412418 CDS YP_002223242.1 203288227 6919352 866626..867057 1 NC_011244.1 amidation motif (Prosite); hypothetical protein 867057 6919352 BRE_810 Borrelia recurrentis A1 hypothetical protein YP_002223242.1 866626 D 412418 CDS YP_002223243.1 203288228 6919353 867032..868516 1 NC_011244.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 868516 nusA 6919353 nusA Borrelia recurrentis A1 transcription elongation factor NusA YP_002223243.1 867032 D 412418 CDS YP_002223244.1 203288229 6919354 868497..871136 1 NC_011244.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 871136 infB 6919354 infB Borrelia recurrentis A1 translation initiation factor IF-2 YP_002223244.1 868497 D 412418 CDS YP_002223245.1 203288230 6919355 871126..871515 1 NC_011244.1 ribosome-binding factor A 871515 rbfA 6919355 rbfA Borrelia recurrentis A1 ribosome-binding factor A YP_002223245.1 871126 D 412418 CDS YP_002223246.1 203288231 6919356 871525..872370 1 NC_011244.1 tRNA pseudouridine 55 synthase 872370 truB 6919356 truB Borrelia recurrentis A1 tRNA pseudouridine 55 synthase YP_002223246.1 871525 D 412418 CDS YP_002223247.1 203288232 6919357 872592..872933 1 NC_011244.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 872933 rpsO 6919357 rpsO Borrelia recurrentis A1 30S ribosomal protein S15 YP_002223247.1 872592 D 412418 CDS YP_002223248.1 203288233 6919358 872947..875100 1 NC_011244.1 polynucleotide phosphorylase/polyadenylase 875100 pnpA 6919358 pnpA Borrelia recurrentis A1 polynucleotide phosphorylase/polyadenylase YP_002223248.1 872947 D 412418 CDS YP_002223249.1 203288234 6919359 875110..876621 1 NC_011244.1 Probable lipoprotein (SpLip); hypothetical protein 876621 6919359 BRE_817 Borrelia recurrentis A1 hypothetical protein YP_002223249.1 875110 D 412418 CDS YP_002223250.1 203288235 6919360 876596..877885 1 NC_011244.1 AKH motif (Prosite); hypothetical protein 877885 6919360 BRE_818 Borrelia recurrentis A1 hypothetical protein YP_002223250.1 876596 D 412418 CDS YP_002223251.1 203288236 6919444 877741..878949 1 NC_011244.1 hypothetical protein 878949 6919444 BRE_819 Borrelia recurrentis A1 hypothetical protein YP_002223251.1 877741 D 412418 CDS YP_002223252.1 203288237 6919445 878967..880094 1 NC_011244.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 880094 tgt 6919445 tgt Borrelia recurrentis A1 queuine tRNA-ribosyltransferase YP_002223252.1 878967 D 412418 CDS YP_002223253.1 203288238 6919446 880087..881610 1 NC_011244.1 virulence factor MviN protein 881610 mviN 6919446 mviN Borrelia recurrentis A1 virulence factor MviN protein YP_002223253.1 880087 D 412418 CDS YP_002223254.1 203288239 6919447 881607..883037 1 NC_011244.1 hypothetical protein 883037 6919447 BRE_822 Borrelia recurrentis A1 hypothetical protein YP_002223254.1 881607 D 412418 CDS YP_002223255.1 203288240 6919448 complement(883031..884293) 1 NC_011244.1 pantothenate metabolism flavoprotein 884293 dfp 6919448 dfp Borrelia recurrentis A1 pantothenate metabolism flavoprotein YP_002223255.1 883031 R 412418 CDS YP_002223256.1 203288241 6919449 884449..885870 1 NC_011244.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 885870 panF 6919449 panF Borrelia recurrentis A1 sodium/panthothenate symporter YP_002223256.1 884449 D 412418 CDS YP_002223257.1 203288242 6919450 885875..886849 1 NC_011244.1 RNA pseudouridylate synthase family protein 886849 rluA 6919450 rluA Borrelia recurrentis A1 RNA pseudouridylate synthase family protein YP_002223257.1 885875 D 412418 CDS YP_002223258.1 203288243 6919451 886818..887759 1 NC_011244.1 hypothetical protein 887759 6919451 BRE_826 Borrelia recurrentis A1 hypothetical protein YP_002223258.1 886818 D 412418 CDS YP_002223259.1 203288244 6919452 887707..889167 1 NC_011244.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 889167 murC 6919452 murC Borrelia recurrentis A1 UDP-N-acetylmuramate--L-alanine ligase YP_002223259.1 887707 D 412418 CDS YP_002223260.1 203288245 6919453 889179..890048 1 NC_011244.1 hypothetical protein 890048 6919453 BRE_828 Borrelia recurrentis A1 hypothetical protein YP_002223260.1 889179 D 412418 CDS YP_002223261.1 203288246 6919454 890045..890584 1 NC_011244.1 catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 890584 6919454 BRE_829 Borrelia recurrentis A1 cytidylate kinase YP_002223261.1 890045 D 412418 CDS YP_002223262.1 203288247 6919455 890574..890804 1 NC_011244.1 hypothetical protein 890804 6919455 BRE_830 Borrelia recurrentis A1 hypothetical protein YP_002223262.1 890574 D 412418 CDS YP_002223263.1 203288248 6919456 890791..891693 1 NC_011244.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 891693 miaA 6919456 miaA Borrelia recurrentis A1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002223263.1 890791 D 412418 CDS YP_002223264.1 203288249 6919457 complement(891849..892205) 1 NC_011244.1 Possible lipoprotein (SpLip); hypothetical protein 892205 6919457 BRE_832 Borrelia recurrentis A1 hypothetical protein YP_002223264.1 891849 R 412418 CDS YP_002223265.1 203288250 6919458 892283..892831 1 NC_011244.1 hypothetical protein 892831 6919458 BRE_833 Borrelia recurrentis A1 hypothetical protein YP_002223265.1 892283 D 412418 CDS YP_002223266.1 203288251 6919459 complement(892803..893612) 1 NC_011244.1 hypothetical protein 893612 6919459 BRE_834 Borrelia recurrentis A1 hypothetical protein YP_002223266.1 892803 R 412418 CDS YP_002223267.1 203288252 6919460 complement(893605..894117) 1 NC_011244.1 hypothetical protein 894117 6919460 BRE_835 Borrelia recurrentis A1 hypothetical protein YP_002223267.1 893605 R 412418 CDS YP_002223268.1 203288253 6919461 complement(894163..895599) 1 NC_011244.1 Sugar Specific PTS family, n-acetylglucosamine-specific enzyme IIABC 895599 nagE 6919461 nagE Borrelia recurrentis A1 Sugar Specific PTS family, n-acetylglucosamine-specific enzyme IIABC YP_002223268.1 894163 R 412418 CDS YP_002223269.1 203288254 6919462 complement(895689..898175) 1 NC_011244.1 ATP-dependent helicase 898175 hrpA 6919462 hrpA Borrelia recurrentis A1 ATP-dependent helicase YP_002223269.1 895689 R 412418 CDS YP_002223270.1 203288255 6919463 complement(898179..900716) 1 NC_011244.1 DNA topoisomerase I 900716 topA 6919463 topA Borrelia recurrentis A1 DNA topoisomerase I YP_002223270.1 898179 R 412418 CDS YP_002223271.1 203288256 6919464 900793..902025 1 NC_011244.1 exonuclease SbcD 902025 sbcD 6919464 sbcD Borrelia recurrentis A1 exonuclease SbcD YP_002223271.1 900793 D 412418 CDS YP_002223272.1 203288257 6919465 902012..904867 1 NC_011244.1 exonuclease SbcC 904867 sbcC 6919465 sbcC Borrelia recurrentis A1 exonuclease SbcC YP_002223272.1 902012 D 412418 CDS YP_002223273.1 203288258 6919467 905899..906486 1 NC_011244.1 copper homeostasis protein cutC 906486 cutC 6919467 cutC Borrelia recurrentis A1 copper homeostasis protein cutC YP_002223273.1 905899 D 412418 CDS YP_002223274.1 203288259 6919468 complement(906558..907382) 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 907382 6919468 BRE_843 Borrelia recurrentis A1 putative lipoprotein YP_002223274.1 906558 R 412418 CDS YP_002223275.1 203288260 6919469 complement(907370..910504) 1 NC_011244.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 910504 ileS 6919469 ileS Borrelia recurrentis A1 isoleucyl-tRNA synthetase YP_002223275.1 907370 R 412418 CDS YP_002223276.1 203288261 6919470 complement(910489..912723) 1 NC_011244.1 ATP-dependent Clp protease, subunit C 912723 clpC 6919470 clpC Borrelia recurrentis A1 ATP-dependent Clp protease, subunit C YP_002223276.1 910489 R 412418 CDS YP_002223277.1 203288262 6919471 complement(912740..914449) 1 NC_011244.1 phosphomannomutase 914449 cpsG 6919471 cpsG Borrelia recurrentis A1 phosphomannomutase YP_002223277.1 912740 R 412418 CDS YP_002223278.1 203288263 6919472 914565..916529 1 NC_011244.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 916529 uvrB 6919472 uvrB Borrelia recurrentis A1 excinuclease ABC subunit B YP_002223278.1 914565 D 412418 CDS YP_002223279.1 203288264 6919473 916557..919397 1 NC_011244.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 919397 uvrA 6919473 uvrA Borrelia recurrentis A1 excinuclease ABC subunit A YP_002223279.1 916557 D 412418 CDS YP_002223280.1 203288265 6919474 919352..922810 1 NC_011244.1 hypothetical protein 922810 6919474 BRE_849 Borrelia recurrentis A1 hypothetical protein YP_002223280.1 919352 D 412418 CDS YP_002223281.1 203288266 6919475 complement(922858..923451) 1 NC_011244.1 hypothetical protein 923451 6919475 BRE_850 Borrelia recurrentis A1 hypothetical protein YP_002223281.1 922858 R 412418 CDS YP_002223282.1 203288267 6919476 complement(923458..925032) 1 NC_011244.1 Probable lipoprotein (SpLip); putative lipoprotein 925032 6919476 BRE_851 Borrelia recurrentis A1 putative lipoprotein YP_002223282.1 923458 R 412418 CDS YP_002223283.1 203288268 6919477 925218..926447 1 NC_011244.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 926447 arcA 6919477 arcA Borrelia recurrentis A1 arginine deiminase YP_002223283.1 925218 D 412418 CDS YP_002223284.1 203288269 6919478 926411..927460 1 NC_011244.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 927460 arcB 6919478 arcB Borrelia recurrentis A1 ornithine carbamoyltransferase YP_002223284.1 926411 D 412418 CDS YP_002223285.1 203288270 6919479 927513..928928 1 NC_011244.1 hypothetical protein 928928 6919479 BRE_854 Borrelia recurrentis A1 hypothetical protein YP_002223285.1 927513 D 412418 CDS YP_002223286.1 203288271 6919481 930214..930951 1 NC_011244.1 putative permease 930951 6919481 BRE_856 Borrelia recurrentis A1 putative permease YP_002223286.1 930214 D 412418 CDS YP_002223323.1 203288273 6919549 complement(5..658) 1 NC_011246.1 hypothetical protein 658 6919549 BRE_1001 Borrelia recurrentis A1 hypothetical protein YP_002223323.1 5 R 412418 CDS YP_002223324.1 203288274 6919550 646..1497 1 NC_011246.1 hypothetical protein 1497 6919550 BRE_1002 Borrelia recurrentis A1 hypothetical protein YP_002223324.1 646 D 412418 CDS YP_002223325.1 203288275 6919551 1920..2939 1 NC_011246.1 Probable lipoprotein (SpLip); hypothetical protein 2939 6919551 BRE_1003 Borrelia recurrentis A1 hypothetical protein YP_002223325.1 1920 D 412418 CDS YP_002223326.1 203288276 6919552 complement(3198..3845) 1 NC_011246.1 hypothetical protein 3845 6919552 BRE_1004 Borrelia recurrentis A1 hypothetical protein YP_002223326.1 3198 R 412418 CDS YP_002223327.1 203288277 6919553 complement(4043..4837) 1 NC_011246.1 hypothetical protein 4837 6919553 BRE_1005 Borrelia recurrentis A1 hypothetical protein YP_002223327.1 4043 R 412418 CDS YP_002223328.1 203288278 6919554 complement(5146..6114) 1 NC_011246.1 Possible lipoprotein (SpLip); hypothetical protein 6114 6919554 BRE_1006 Borrelia recurrentis A1 hypothetical protein YP_002223328.1 5146 R 412418 CDS YP_002223329.1 203288279 6919555 complement(6357..7409) 1 NC_011246.1 hypothetical protein 7409 6919555 BRE_1007 Borrelia recurrentis A1 hypothetical protein YP_002223329.1 6357 R 412418 CDS YP_002223330.1 203288280 6919556 complement(7750..8787) 1 NC_011246.1 RGD motif (Prosite); Possible lipoprotein (SpLip); hypothetical protein 8787 6919556 BRE_1008 Borrelia recurrentis A1 hypothetical protein YP_002223330.1 7750 R 412418 CDS YP_002223331.1 203288281 6919557 complement(9128..10057) 1 NC_011246.1 RGD motif (Prosite); hypothetical protein 10057 6919557 BRE_1009 Borrelia recurrentis A1 hypothetical protein YP_002223331.1 9128 R 412418 CDS YP_002223332.1 203288282 6919559 complement(11357..12163) 1 NC_011246.1 hypothetical protein 12163 6919559 BRE_1011 Borrelia recurrentis A1 hypothetical protein YP_002223332.1 11357 R 412418 CDS YP_002223333.1 203288283 6919562 complement(14225..14998) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 14998 6919562 BRE_1014 Borrelia recurrentis A1 putative lipoprotein YP_002223333.1 14225 R 412418 CDS YP_002223334.1 203288284 6919563 complement(15560..16444) 1 NC_011246.1 hypothetical protein 16444 6919563 BRE_1015 Borrelia recurrentis A1 hypothetical protein YP_002223334.1 15560 R 412418 CDS YP_002223335.1 203288285 6919565 18280..19107 1 NC_011246.1 hypothetical protein 19107 6919565 BRE_1017 Borrelia recurrentis A1 hypothetical protein YP_002223335.1 18280 D 412418 CDS YP_002223336.1 203288286 6919566 19547..20353 1 NC_011246.1 hypothetical protein 20353 6919566 BRE_1018 Borrelia recurrentis A1 hypothetical protein YP_002223336.1 19547 D 412418 CDS YP_002223337.1 203288287 6919567 20683..21483 1 NC_011246.1 hypothetical protein 21483 6919567 BRE_1019 Borrelia recurrentis A1 hypothetical protein YP_002223337.1 20683 D 412418 CDS YP_002223338.1 203288288 6919569 complement(22854..23594) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 23594 6919569 BRE_1021 Borrelia recurrentis A1 putative lipoprotein YP_002223338.1 22854 R 412418 CDS YP_002223339.1 203288289 6919571 complement(25000..25875) 1 NC_011246.1 Possible lipoprotein (SpLip); hypothetical protein 25875 6919571 BRE_1023 Borrelia recurrentis A1 hypothetical protein YP_002223339.1 25000 R 412418 CDS YP_002223340.1 203288290 6919572 complement(26093..26890) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 26890 6919572 BRE_1024 Borrelia recurrentis A1 putative lipoprotein YP_002223340.1 26093 R 412418 CDS YP_002223341.1 203288291 6919573 complement(27026..27814) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 27814 6919573 BRE_1025 Borrelia recurrentis A1 putative lipoprotein YP_002223341.1 27026 R 412418 CDS YP_002223342.1 203288292 6919574 complement(27842..28618) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 28618 6919574 BRE_1026 Borrelia recurrentis A1 putative lipoprotein YP_002223342.1 27842 R 412418 CDS YP_002223343.1 203288293 6919575 complement(28637..29413) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 29413 6919575 BRE_1027 Borrelia recurrentis A1 putative lipoprotein YP_002223343.1 28637 R 412418 CDS YP_002223344.1 203288294 6919577 complement(31477..32364) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 32364 6919577 BRE_1029 Borrelia recurrentis A1 putative lipoprotein YP_002223344.1 31477 R 412418 CDS YP_002223345.1 203288295 6919578 complement(32596..33336) 1 NC_011246.1 SBP_BACTERIAL_3 motif (Prosite); hypothetical protein 33336 6919578 BRE_1030 Borrelia recurrentis A1 hypothetical protein YP_002223345.1 32596 R 412418 CDS YP_002223346.1 203288296 6919579 complement(33572..34633) 1 NC_011246.1 Probable lipoprotein (SpLip); hypothetical protein 34633 6919579 BRE_1031 Borrelia recurrentis A1 hypothetical protein YP_002223346.1 33572 R 412418 CDS YP_002223347.1 203288297 6919580 complement(34971..35813) 1 NC_011246.1 PRENYLATION motif (Prosite); Probable lipoprotein (SpLip); hypothetical protein 35813 6919580 BRE_1032 Borrelia recurrentis A1 hypothetical protein YP_002223347.1 34971 R 412418 CDS YP_002223348.1 203288298 6919582 complement(36870..37466) 1 NC_011246.1 hypothetical protein 37466 6919582 BRE_1034 Borrelia recurrentis A1 hypothetical protein YP_002223348.1 36870 R 412418 CDS YP_002223349.1 203288299 6919583 complement(37632..38240) 1 NC_011246.1 hypothetical protein 38240 6919583 BRE_1035 Borrelia recurrentis A1 hypothetical protein YP_002223349.1 37632 R 412418 CDS YP_002223350.1 203288300 6919584 complement(38426..38770) 1 NC_011246.1 RGD motif (Prosite); hypothetical protein 38770 6919584 BRE_1036 Borrelia recurrentis A1 hypothetical protein YP_002223350.1 38426 R 412418 CDS YP_002223351.1 203288301 6919585 complement(38812..39189) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 39189 6919585 BRE_1037 Borrelia recurrentis A1 putative lipoprotein YP_002223351.1 38812 R 412418 CDS YP_002223352.1 203288302 6919586 complement(39396..40529) 1 NC_011246.1 transposase IS605 OrfB 40529 6919586 BRE_1038 Borrelia recurrentis A1 transposase IS605 OrfB YP_002223352.1 39396 R 412418 CDS YP_002223353.1 203288303 6919587 40563..40982 1 NC_011246.1 transposase IS200-like protein 40982 6919587 BRE_1039 Borrelia recurrentis A1 transposase IS200-like protein YP_002223353.1 40563 D 412418 CDS YP_002223354.1 203288304 6919588 complement(41143..42039) 1 NC_011246.1 hypothetical protein 42039 6919588 BRE_1040 Borrelia recurrentis A1 hypothetical protein YP_002223354.1 41143 R 412418 CDS YP_002223355.1 203288305 6919589 complement(43168..43932) 1 NC_011246.1 Probable lipoprotein (SpLip); hypothetical protein 43932 6919589 BRE_1041 Borrelia recurrentis A1 hypothetical protein YP_002223355.1 43168 R 412418 CDS YP_002223356.1 203288306 6919590 complement(44121..44840) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 44840 6919590 BRE_1042 Borrelia recurrentis A1 putative lipoprotein YP_002223356.1 44121 R 412418 CDS YP_002223357.1 203288307 6919591 complement(44990..45787) 1 NC_011246.1 Probable lipoprotein (SpLip); hypothetical protein 45787 6919591 BRE_1043 Borrelia recurrentis A1 hypothetical protein YP_002223357.1 44990 R 412418 CDS YP_002223358.1 203288308 6919592 complement(46106..46795) 1 NC_011246.1 Probable lipoprotein (SpLip); hypothetical protein 46795 6919592 BRE_1044 Borrelia recurrentis A1 hypothetical protein YP_002223358.1 46106 R 412418 CDS YP_002223359.1 203288309 6919593 complement(47132..48097) 1 NC_011246.1 ribonucleoside-diphosphate reductase subunit beta 48097 nrdF 6919593 nrdF Borrelia recurrentis A1 ribonucleoside-diphosphate reductase subunit beta YP_002223359.1 47132 R 412418 CDS YP_002223360.1 203288310 6919484 complement(48142..50265) 1 NC_011246.1 ribonucleoside-diphosphate reductase subunit alpha 50265 nrdE 6919484 nrdE Borrelia recurrentis A1 ribonucleoside-diphosphate reductase subunit alpha YP_002223360.1 48142 R 412418 CDS YP_002223361.1 203288311 6919485 complement(50189..50554) 1 NC_011246.1 ribonucleoprotein 50554 nrdI 6919485 nrdI Borrelia recurrentis A1 ribonucleoprotein YP_002223361.1 50189 R 412418 CDS YP_002223362.1 203288312 6919486 complement(50630..51448) 1 NC_011246.1 thymidylate synthase protein 51448 6919486 BRE_1048 Borrelia recurrentis A1 thymidylate synthase protein YP_002223362.1 50630 R 412418 CDS YP_002223363.1 203288313 6919487 51874..52710 1 NC_011246.1 Probable lipoprotein (SpLip); p23-like cell envelope protein 52710 6919487 BRE_1049 Borrelia recurrentis A1 p23-like cell envelope protein YP_002223363.1 51874 D 412418 CDS YP_002223364.1 203288314 6919488 53012..53842 1 NC_011246.1 Possible lipoprotein (SpLip); p23-like cell envelope protein 53842 6919488 BRE_1050 Borrelia recurrentis A1 p23-like cell envelope protein YP_002223364.1 53012 D 412418 CDS YP_002223365.1 203288315 6919489 complement(54062..54559) 1 NC_011246.1 hypothetical protein 54559 6919489 BRE_1051 Borrelia recurrentis A1 hypothetical protein YP_002223365.1 54062 R 412418 CDS YP_002223366.1 203288316 6919490 complement(54734..55351) 1 NC_011246.1 hypothetical protein 55351 6919490 BRE_1052 Borrelia recurrentis A1 hypothetical protein YP_002223366.1 54734 R 412418 CDS YP_002223367.1 203288317 6919492 complement(56442..57434) 1 NC_011246.1 outer membrane protein 57434 6919492 BRE_1054 Borrelia recurrentis A1 outer membrane protein YP_002223367.1 56442 R 412418 CDS YP_002223368.1 203288318 6919493 complement(57473..58039) 1 NC_011246.1 hypothetical protein 58039 6919493 BRE_1055 Borrelia recurrentis A1 hypothetical protein YP_002223368.1 57473 R 412418 CDS YP_002223369.1 203288319 6919494 complement(58064..59530) 1 NC_011246.1 hypothetical protein 59530 6919494 BRE_1056 Borrelia recurrentis A1 hypothetical protein YP_002223369.1 58064 R 412418 CDS YP_002223370.1 203288320 6919495 complement(59544..59762) 1 NC_011246.1 hypothetical protein 59762 6919495 BRE_1057 Borrelia recurrentis A1 hypothetical protein YP_002223370.1 59544 R 412418 CDS YP_002223371.1 203288321 6919496 complement(59787..60209) 1 NC_011246.1 hypothetical protein 60209 6919496 BRE_1058 Borrelia recurrentis A1 hypothetical protein YP_002223371.1 59787 R 412418 CDS YP_002223372.1 203288322 6919497 complement(60213..60635) 1 NC_011246.1 hypothetical protein 60635 6919497 BRE_1059 Borrelia recurrentis A1 hypothetical protein YP_002223372.1 60213 R 412418 CDS YP_002223373.1 203288323 6919498 complement(60632..61708) 1 NC_011246.1 hypothetical protein 61708 6919498 BRE_1060 Borrelia recurrentis A1 hypothetical protein YP_002223373.1 60632 R 412418 CDS YP_002223374.1 203288324 6919499 complement(61754..62302) 1 NC_011246.1 hypothetical protein 62302 6919499 BRE_1061 Borrelia recurrentis A1 hypothetical protein YP_002223374.1 61754 R 412418 CDS YP_002223375.1 203288325 6919500 complement(62335..62709) 1 NC_011246.1 hypothetical protein 62709 6919500 BRE_1062 Borrelia recurrentis A1 hypothetical protein YP_002223375.1 62335 R 412418 CDS YP_002223376.1 203288326 6919501 complement(62706..63110) 1 NC_011246.1 hypothetical protein 63110 6919501 BRE_1063 Borrelia recurrentis A1 hypothetical protein YP_002223376.1 62706 R 412418 CDS YP_002223377.1 203288327 6919502 complement(63101..64024) 1 NC_011246.1 hypothetical protein 64024 6919502 BRE_1064 Borrelia recurrentis A1 hypothetical protein YP_002223377.1 63101 R 412418 CDS YP_002223378.1 203288328 6919506 complement(66773..68053) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 68053 6919506 BRE_1068 Borrelia recurrentis A1 putative lipoprotein YP_002223378.1 66773 R 412418 CDS YP_002223379.1 203288329 6919507 68307..69386 1 NC_011246.1 putative Viral A-type inclusion protein repeat 69386 6919507 BRE_1069 Borrelia recurrentis A1 putative Viral A-type inclusion protein repeat YP_002223379.1 68307 D 412418 CDS YP_002223380.1 203288330 6919508 69709..70311 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 70311 6919508 BRE_1070 Borrelia recurrentis A1 putative lipoprotein YP_002223380.1 69709 D 412418 CDS YP_002223381.1 203288331 6919510 72217..74085 1 NC_011246.1 Viral A-type inclusion protein repeat 74085 6919510 BRE_1072 Borrelia recurrentis A1 Viral A-type inclusion protein repeat YP_002223381.1 72217 D 412418 CDS YP_002223382.1 203288332 6919511 74289..76148 1 NC_011246.1 Possible lipoprotein (SpLip); putative lipoprotein 76148 6919511 BRE_1073 Borrelia recurrentis A1 putative lipoprotein YP_002223382.1 74289 D 412418 CDS YP_002223383.1 203288333 6919512 76293..77726 1 NC_011246.1 Possible lipoprotein (SpLip); putative lipoprotein 77726 6919512 BRE_1074 Borrelia recurrentis A1 putative lipoprotein YP_002223383.1 76293 D 412418 CDS YP_002223384.1 203288334 6919513 complement(79150..81447) 1 NC_011246.1 ATP_GTP_A motif (Prosite); hypothetical protein 81447 6919513 BRE_1075 Borrelia recurrentis A1 hypothetical protein YP_002223384.1 79150 R 412418 CDS YP_002223385.1 203288335 6919514 complement(81637..82623) 1 NC_011246.1 hypothetical protein 82623 6919514 BRE_1076 Borrelia recurrentis A1 hypothetical protein YP_002223385.1 81637 R 412418 CDS YP_002223386.1 203288336 6919515 complement(82817..83449) 1 NC_011246.1 hypothetical protein 83449 6919515 BRE_1077 Borrelia recurrentis A1 hypothetical protein YP_002223386.1 82817 R 412418 CDS YP_002223387.1 203288337 6919516 complement(83720..84148) 1 NC_011246.1 hypothetical protein 84148 6919516 BRE_1078 Borrelia recurrentis A1 hypothetical protein YP_002223387.1 83720 R 412418 CDS YP_002223388.1 203288338 6919517 84384..85196 1 NC_011246.1 Possible lipoprotein (SpLip); p23-like cell envelope protein 85196 6919517 BRE_1079 Borrelia recurrentis A1 p23-like cell envelope protein YP_002223388.1 84384 D 412418 CDS YP_002223389.1 203288339 6919518 85460..86260 1 NC_011246.1 p23-like cell envelope protein 86260 6919518 BRE_1080 Borrelia recurrentis A1 p23-like cell envelope protein YP_002223389.1 85460 D 412418 CDS YP_002223390.1 203288340 6919519 86782..87312 1 NC_011246.1 hypothetical protein 87312 6919519 BRE_1081 Borrelia recurrentis A1 hypothetical protein YP_002223390.1 86782 D 412418 CDS YP_002223391.1 203288341 6919520 complement(87690..88928) 1 NC_011246.1 bsr protein 88928 bsr 6919520 bsr Borrelia recurrentis A1 bsr protein YP_002223391.1 87690 R 412418 CDS YP_002223392.1 203288342 6919521 complement(89046..89597) 1 NC_011246.1 hypothetical protein 89597 6919521 BRE_1083 Borrelia recurrentis A1 hypothetical protein YP_002223392.1 89046 R 412418 CDS YP_002223393.1 203288343 6919522 complement(90415..90966) 1 NC_011246.1 PF49 plasmid partition protein 90966 pf49 6919522 pf49 Borrelia recurrentis A1 PF49 plasmid partition protein YP_002223393.1 90415 R 412418 CDS YP_002223394.1 203288344 6919523 complement(91017..91772) 1 NC_011246.1 PF32 plasmid partition protein 91772 pf32 6919523 pf32 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223394.1 91017 R 412418 CDS YP_002223395.1 203288345 6919524 complement(91748..92311) 1 NC_011246.1 plasmid partitioning associated protein-1 92311 ppap1 6919524 ppap1 Borrelia recurrentis A1 plasmid partitioning associated protein-1 YP_002223395.1 91748 R 412418 CDS YP_002223396.1 203288346 6919525 complement(92339..93448) 1 NC_011246.1 plasmid partioning associated protein 2 93448 ppap2 6919525 ppap2 Borrelia recurrentis A1 plasmid partioning associated protein 2 YP_002223396.1 92339 R 412418 CDS YP_002223397.1 203288347 6919526 complement(93930..94295) 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 94295 6919526 BRE_1088 Borrelia recurrentis A1 putative lipoprotein YP_002223397.1 93930 R 412418 CDS YP_002223398.1 203288348 6919527 complement(94292..94675) 1 NC_011246.1 hypothetical protein 94675 6919527 BRE_1089 Borrelia recurrentis A1 hypothetical protein YP_002223398.1 94292 R 412418 CDS YP_002223399.1 203288349 6919528 complement(95014..96126) 1 NC_011246.1 hypothetical protein 96126 6919528 BRE_1090 Borrelia recurrentis A1 hypothetical protein YP_002223399.1 95014 R 412418 CDS YP_002223400.1 203288350 6919530 complement(96750..97610) 1 NC_011246.1 hypothetical protein 97610 6919530 BRE_1092 Borrelia recurrentis A1 hypothetical protein YP_002223400.1 96750 R 412418 CDS YP_002223401.1 203288351 6919531 complement(97614..97928) 1 NC_011246.1 hypothetical protein 97928 6919531 BRE_1093 Borrelia recurrentis A1 hypothetical protein YP_002223401.1 97614 R 412418 CDS YP_002223402.1 203288352 6919532 99271..99915 1 NC_011246.1 Probable lipoprotein (SpLip); putative lipoprotein 99915 6919532 BRE_1094 Borrelia recurrentis A1 putative lipoprotein YP_002223402.1 99271 D 412418 CDS YP_002223403.1 203288353 6919533 100544..101647 1 NC_011246.1 hypothetical protein 101647 6919533 BRE_1095 Borrelia recurrentis A1 hypothetical protein YP_002223403.1 100544 D 412418 CDS YP_002223404.1 203288354 6919535 103124..104182 1 NC_011246.1 Probable lipoprotein (SpLip); hypothetical protein 104182 6919535 BRE_1097 Borrelia recurrentis A1 hypothetical protein YP_002223404.1 103124 D 412418 CDS YP_002223405.1 203288355 6919538 108369..109166 1 NC_011246.1 putative lipoprotein 109166 6919538 BRE_1100 Borrelia recurrentis A1 putative lipoprotein YP_002223405.1 108369 D 412418 CDS YP_002223406.1 203288356 6919540 111063..112715 1 NC_011246.1 putative lipoprotein 112715 6919540 BRE_1102 Borrelia recurrentis A1 putative lipoprotein YP_002223406.1 111063 D 412418 CDS YP_002223407.1 203288357 6919541 113038..113673 1 NC_011246.1 hypothetical protein 113673 6919541 BRE_1103 Borrelia recurrentis A1 hypothetical protein YP_002223407.1 113038 D 412418 CDS YP_002223408.1 203288358 6919543 115386..116000 1 NC_011246.1 pyrazinamidase/nicotinamidase (pncA) 116000 pncA 6919543 pncA Borrelia recurrentis A1 pyrazinamidase/nicotinamidase (pncA) YP_002223408.1 115386 D 412418 CDS YP_002223409.1 203288359 6919544 116208..117080 1 NC_011246.1 hypothetical protein 117080 6919544 BRE_1106 Borrelia recurrentis A1 hypothetical protein YP_002223409.1 116208 D 412418 CDS YP_002223410.1 203288360 6919545 117250..117531 1 NC_011246.1 hypothetical protein 117531 6919545 BRE_1107 Borrelia recurrentis A1 hypothetical protein YP_002223410.1 117250 D 412418 CDS YP_002223411.1 203288361 6919546 118098..119639 1 NC_011246.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 119639 guaA 6919546 guaA Borrelia recurrentis A1 GMP synthase YP_002223411.1 118098 D 412418 CDS YP_002223412.1 203288362 6919547 119669..121120 1 NC_011246.1 inosine-5'-monophosphate dehydrogenase 121120 6919547 BRE_1109 Borrelia recurrentis A1 inosine-5'-monophosphate dehydrogenase YP_002223412.1 119669 D 412418 CDS YP_002223413.1 203288363 6919548 121396..122361 1 NC_011246.1 Probable lipoprotein (SpLip); hypothetical protein 122361 6919548 BRE_1110 Borrelia recurrentis A1 hypothetical protein YP_002223413.1 121396 D 412418 CDS YP_002223633.1 203288365 6919597 complement(5082..6437) 1 NC_011252.1 guanine-hypoxanthine permease 6437 6919597 BRE_6004 Borrelia recurrentis A1 guanine-hypoxanthine permease YP_002223633.1 5082 R 412418 CDS YP_002223634.1 203288366 6919598 complement(6559..7017) 1 NC_011252.1 putative lipoprotein 7017 6919598 BRE_6005 Borrelia recurrentis A1 putative lipoprotein YP_002223634.1 6559 R 412418 CDS YP_002223635.1 203288367 6919599 complement(7056..7568) 1 NC_011252.1 Probable lipoprotein (SpLip); putative lipoprotein 7568 6919599 BRE_6006 Borrelia recurrentis A1 putative lipoprotein YP_002223635.1 7056 R 412418 CDS YP_002223636.1 203288368 6919601 complement(8318..8884) 1 NC_011252.1 Probable lipoprotein (SpLip); putative lipoprotein 8884 6919601 BRE_6008 Borrelia recurrentis A1 putative lipoprotein YP_002223636.1 8318 R 412418 CDS YP_002223637.1 203288369 6919602 8981..10237 1 NC_011252.1 hypothetical protein 10237 6919602 BRE_6009 Borrelia recurrentis A1 hypothetical protein YP_002223637.1 8981 D 412418 CDS YP_002223638.1 203288370 6919603 11054..12685 1 NC_011252.1 PTS system, maltose and glucose-specific IIABC component 12685 malX 6919603 malX Borrelia recurrentis A1 PTS system, maltose and glucose-specific IIABC component YP_002223638.1 11054 D 412418 CDS YP_002223639.1 203288371 6919604 12768..13052 1 NC_011252.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 13052 acyP 6919604 acyP Borrelia recurrentis A1 acylphosphatase YP_002223639.1 12768 D 412418 CDS YP_002223640.1 203288372 6919605 complement(13027..13518) 1 NC_011252.1 hypothetical protein 13518 6919605 BRE_6012 Borrelia recurrentis A1 hypothetical protein YP_002223640.1 13027 R 412418 CDS YP_002223641.1 203288373 6919606 complement(13574..14932) 1 NC_011252.1 amidation motif (Prosite); telomere resolvase 14932 resT 6919606 resT Borrelia recurrentis A1 telomere resolvase YP_002223641.1 13574 R 412418 CDS YP_002223642.1 203288374 6919607 complement(15020..15661) 1 NC_011252.1 Probable lipoprotein (SpLip); hypothetical protein 15661 6919607 BRE_6014 Borrelia recurrentis A1 hypothetical protein YP_002223642.1 15020 R 412418 CDS YP_002223643.1 203288375 6919608 15925..16863 1 NC_011252.1 hypothetical protein 16863 6919608 BRE_6015 Borrelia recurrentis A1 hypothetical protein YP_002223643.1 15925 D 412418 CDS YP_002223644.1 203288376 6919609 16886..17446 1 NC_011252.1 plasmid partitioning associated protein-1 17446 ppap1 6919609 ppap1 Borrelia recurrentis A1 plasmid partitioning associated protein-1 YP_002223644.1 16886 D 412418 CDS YP_002223645.1 203288377 6919610 17422..18186 1 NC_011252.1 PF32 plasmid partition protein 18186 pf32 6919610 pf32 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223645.1 17422 D 412418 CDS YP_002223646.1 203288378 6919611 18242..18796 1 NC_011252.1 PF49 plasmid partition protein 18796 pf49 6919611 pf49 Borrelia recurrentis A1 PF49 plasmid partition protein YP_002223646.1 18242 D 412418 CDS YP_002223647.1 203288379 6919612 complement(19198..19737) 1 NC_011252.1 Probable lipoprotein (SpLip); hypothetical protein 19737 6919612 BRE_6019 Borrelia recurrentis A1 hypothetical protein YP_002223647.1 19198 R 412418 CDS YP_002223648.1 203288380 6919613 20295..21386 1 NC_011252.1 Probable lipoprotein (SpLip); vlp protein, beta subfamily 21386 vlp-b 6919613 vlp-b Borrelia recurrentis A1 vlp protein, beta subfamily YP_002223648.1 20295 D 412418 CDS YP_002223649.1 203288381 6919614 complement(22154..22582) 1 NC_011252.1 family 88-like protein 22582 6919614 BRE_6021 Borrelia recurrentis A1 family 88-like protein YP_002223649.1 22154 R 412418 CDS YP_002223650.1 203288383 6919646 complement(375..884) 1 NC_011253.1 BdrQ-like protein 884 bdr_1 6919646 bdr_1 Borrelia recurrentis A1 BdrQ-like protein YP_002223650.1 375 R 412418 CDS YP_002223651.1 203288384 6919617 complement(1164..1406) 1 NC_011253.1 hypothetical protein 1406 6919617 BRE_5002 Borrelia recurrentis A1 hypothetical protein YP_002223651.1 1164 R 412418 CDS YP_002223652.1 203288385 6919618 complement(1694..1999) 1 NC_011253.1 hypothetical protein 1999 6919618 BRE_5003 Borrelia recurrentis A1 hypothetical protein YP_002223652.1 1694 R 412418 CDS YP_002223653.1 203288386 6919624 8521..9198 1 NC_011253.1 hypothetical protein 9198 6919624 BRE_5009 Borrelia recurrentis A1 hypothetical protein YP_002223653.1 8521 D 412418 CDS YP_002223654.1 203288387 6919625 9182..9784 1 NC_011253.1 plasmid partitioning associated protein-1 9784 ppap1 6919625 ppap1 Borrelia recurrentis A1 plasmid partitioning associated protein-1 YP_002223654.1 9182 D 412418 CDS YP_002223655.1 203288388 6919626 9760..10512 1 NC_011253.1 PF32 plasmid partition protein 10512 pf32 6919626 pf32 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223655.1 9760 D 412418 CDS YP_002223656.1 203288389 6919627 10535..11134 1 NC_011253.1 PF49 plasmid partition protein 11134 pf49 6919627 pf49 Borrelia recurrentis A1 PF49 plasmid partition protein YP_002223656.1 10535 D 412418 CDS YP_002223657.1 203288390 6919629 13336..14223 1 NC_011253.1 Probable lipoprotein (SpLip); putative lipoprotein 14223 6919629 BRE_5014 Borrelia recurrentis A1 putative lipoprotein YP_002223657.1 13336 D 412418 CDS YP_002223658.1 203288391 6919630 complement(14439..14969) 1 NC_011253.1 Probable lipoprotein (SpLip); putative lipoprotein 14969 6919630 BRE_5015 Borrelia recurrentis A1 putative lipoprotein YP_002223658.1 14439 R 412418 CDS YP_002223659.1 203288392 6919631 15782..16375 1 NC_011253.1 hypothetical protein 16375 6919631 BRE_5016 Borrelia recurrentis A1 hypothetical protein YP_002223659.1 15782 D 412418 CDS YP_002223660.1 203288393 6919633 17194..18240 1 NC_011253.1 Probable lipoprotein (SpLip); vlp protein, delta subfamily 18240 vlp-d_1 6919633 vlp-d_1 Borrelia recurrentis A1 vlp protein, delta subfamily YP_002223660.1 17194 D 412418 CDS YP_002223661.1 203288394 6919635 complement(20211..20918) 1 NC_011253.1 Probable lipoprotein (SpLip); ORFk-like protein, lipoprotein 20918 6919635 BRE_5020 Borrelia recurrentis A1 ORFk-like protein, lipoprotein YP_002223661.1 20211 R 412418 CDS YP_002223662.1 203288395 6919638 22497..23315 1 NC_011253.1 bdr proitein 23315 bdr_2 6919638 bdr_2 Borrelia recurrentis A1 bdr proitein YP_002223662.1 22497 D 412418 CDS YP_002223663.1 203288396 6919640 25763..26233 1 NC_011253.1 bdr proitein 26233 bdr_3 6919640 bdr_3 Borrelia recurrentis A1 bdr proitein YP_002223663.1 25763 D 412418 CDS YP_002223664.1 203288397 6919642 27849..28460 1 NC_011253.1 vsp protein 28460 vsp_1 6919642 vsp_1 Borrelia recurrentis A1 vsp protein YP_002223664.1 27849 D 412418 CDS YP_002223665.1 203288398 6919644 29972..31084 1 NC_011253.1 vlp protein, delta subfamily 31084 vlp-d_2 6919644 vlp-d_2 Borrelia recurrentis A1 vlp protein, delta subfamily YP_002223665.1 29972 D 412418 CDS YP_002223666.1 203288399 6919645 31362..31943 1 NC_011253.1 vsp protein 31943 vsp_2 6919645 vsp_2 Borrelia recurrentis A1 vsp protein YP_002223666.1 31362 D 412418 CDS YP_002223687.1 203288401 6919648 complement(1496..1993) 1 NC_011255.1 BBK32-like protein 1993 6919648 BRE_4002 Borrelia recurrentis A1 BBK32-like protein YP_002223687.1 1496 R 412418 CDS YP_002223688.1 203288402 6919649 complement(3385..4521) 1 NC_011255.1 vlp protein 4521 vlp_1 6919649 vlp_1 Borrelia recurrentis A1 vlp protein YP_002223688.1 3385 R 412418 CDS YP_002223689.1 203288403 6919651 complement(6301..6993) 1 NC_011255.1 bdr proitein 6993 bdr_1 6919651 bdr_1 Borrelia recurrentis A1 bdr proitein YP_002223689.1 6301 R 412418 CDS YP_002223690.1 203288404 6919654 8903..9598 1 NC_011255.1 ORFk-like protein 9598 6919654 BRE_4008 Borrelia recurrentis A1 ORFk-like protein YP_002223690.1 8903 D 412418 CDS YP_002223691.1 203288405 6919655 9763..10272 1 NC_011255.1 Probable lipoprotein (SpLip); MlpL-like protein; lipoprotein 10272 6919655 BRE_4009 Borrelia recurrentis A1 MlpL-like protein; lipoprotein YP_002223691.1 9763 D 412418 CDS YP_002223692.1 203288406 6919662 15721..16425 1 NC_011255.1 hypothetical protein 16425 6919662 BRE_4016 Borrelia recurrentis A1 hypothetical protein YP_002223692.1 15721 D 412418 CDS YP_002223693.1 203288407 6919663 16454..17014 1 NC_011255.1 plasmid partitioning associated protein-1 17014 ppap1 6919663 ppap1 Borrelia recurrentis A1 plasmid partitioning associated protein-1 YP_002223693.1 16454 D 412418 CDS YP_002223694.1 203288408 6919664 16990..17739 1 NC_011255.1 PF32 plasmid partition protein 17739 pf32 6919664 pf32 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223694.1 16990 D 412418 CDS YP_002223695.1 203288409 6919665 17796..18371 1 NC_011255.1 PF49 plasmid partition protein 18371 pf49 6919665 pf49 Borrelia recurrentis A1 PF49 plasmid partition protein YP_002223695.1 17796 D 412418 CDS YP_002223696.1 203288410 6919670 complement(22583..23014) 1 NC_011255.1 MlpL-like protein 23014 6919670 BRE_4024 Borrelia recurrentis A1 MlpL-like protein YP_002223696.1 22583 R 412418 CDS YP_002223697.1 203288411 6919671 24060..24599 1 NC_011255.1 family 115-like protein 24599 6919671 BRE_4025 Borrelia recurrentis A1 family 115-like protein YP_002223697.1 24060 D 412418 CDS YP_002223698.1 203288412 6919673 26002..26475 1 NC_011255.1 bdr proitein 26475 bdr_2 6919673 bdr_2 Borrelia recurrentis A1 bdr proitein YP_002223698.1 26002 D 412418 CDS YP_002223699.1 203288413 6919676 28035..28739 1 NC_011255.1 vsp protein 28739 vsp 6919676 vsp Borrelia recurrentis A1 vsp protein YP_002223699.1 28035 D 412418 CDS YP_002223700.1 203288414 6919679 30872..32008 1 NC_011255.1 vlp protein 32008 vlp_2 6919679 vlp_2 Borrelia recurrentis A1 vlp protein YP_002223700.1 30872 D 412418 CDS YP_002223701.1 203288415 6919680 33400..34647 1 NC_011255.1 antigenic protein P35 34647 6919680 BRE_4034 Borrelia recurrentis A1 antigenic protein P35 YP_002223701.1 33400 D 412418 CDS YP_002223768.1 203288417 6919683 1073..1924 1 NC_011258.1 antigen P35-like protein 1924 6919683 BRE_3002 Borrelia recurrentis A1 antigen P35-like protein YP_002223768.1 1073 D 412418 CDS YP_002223769.1 203288418 6919684 complement(2333..3325) 1 NC_011258.1 Probable lipoprotein (SpLip); putative lipoprotein 3325 6919684 BRE_3003 Borrelia recurrentis A1 putative lipoprotein YP_002223769.1 2333 R 412418 CDS YP_002223770.1 203288419 6919686 complement(6191..7024) 1 NC_011258.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 7024 thyX 6919686 thyX Borrelia recurrentis A1 FAD-dependent thymidylate synthase YP_002223770.1 6191 R 412418 CDS YP_002223771.1 203288420 6919687 complement(7263..8027) 1 NC_011258.1 hypothetical protein 8027 6919687 BRE_3006 Borrelia recurrentis A1 hypothetical protein YP_002223771.1 7263 R 412418 CDS YP_002223772.1 203288421 6919688 8318..9274 1 NC_011258.1 Probable lipoprotein (SpLip); BBK01-like protein 9274 6919688 BRE_3007 Borrelia recurrentis A1 BBK01-like protein YP_002223772.1 8318 D 412418 CDS YP_002223773.1 203288422 6919689 9822..10415 1 NC_011258.1 Probable lipoprotein (SpLip); hypothetical protein 10415 6919689 BRE_3008 Borrelia recurrentis A1 hypothetical protein YP_002223773.1 9822 D 412418 CDS YP_002223774.1 203288423 6919690 10546..11742 1 NC_011258.1 Probable lipoprotein (SpLip); immunogenic protein P35 11742 6919690 BRE_3009 Borrelia recurrentis A1 immunogenic protein P35 YP_002223774.1 10546 D 412418 CDS YP_002223775.1 203288424 6919692 complement(13171..14163) 1 NC_011258.1 vlp protein, delta subfamily 14163 vlp-d_1 6919692 vlp-d_1 Borrelia recurrentis A1 vlp protein, delta subfamily YP_002223775.1 13171 R 412418 CDS YP_002223776.1 203288425 6919693 complement(14770..15795) 1 NC_011258.1 vlp protein, gamma subfamily 15795 vlp-c 6919693 vlp-c Borrelia recurrentis A1 vlp protein, gamma subfamily YP_002223776.1 14770 R 412418 CDS YP_002223777.1 203288426 6919694 16063..16653 1 NC_011258.1 bdr proitein 16653 bdr 6919694 bdr Borrelia recurrentis A1 bdr proitein YP_002223777.1 16063 D 412418 CDS YP_002223778.1 203288427 6919696 complement(18123..18884) 1 NC_011258.1 PF32 plasmid partition protein 18884 pf32 6919696 pf32 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223778.1 18123 R 412418 CDS YP_002223779.1 203288428 6919697 complement(18860..19435) 1 NC_011258.1 plasmid partitioning associated protein-1 19435 ppap1 6919697 ppap1 Borrelia recurrentis A1 plasmid partitioning associated protein-1 YP_002223779.1 18860 R 412418 CDS YP_002223780.1 203288429 6919698 complement(19508..20191) 1 NC_011258.1 hypothetical protein 20191 6919698 BRE_3017 Borrelia recurrentis A1 hypothetical protein YP_002223780.1 19508 R 412418 CDS YP_002223781.1 203288430 6919699 21328..22302 1 NC_011258.1 vlp protein, alpha subfamily 22302 vlp-a 6919699 vlp-a Borrelia recurrentis A1 vlp protein, alpha subfamily YP_002223781.1 21328 D 412418 CDS YP_002223782.1 203288431 6919700 22933..23577 1 NC_011258.1 Probable lipoprotein (SpLip); vsp protein 23577 vsp_1 6919700 vsp_1 Borrelia recurrentis A1 vsp protein YP_002223782.1 22933 D 412418 CDS YP_002223783.1 203288432 6919701 23823..24917 1 NC_011258.1 vlp protein, delta subfamily 24917 vlp-d_2 6919701 vlp-d_2 Borrelia recurrentis A1 vlp protein, delta subfamily YP_002223783.1 23823 D 412418 CDS YP_002223784.1 203288433 6919702 25266..25847 1 NC_011258.1 vsp protein 25847 vsp_2 6919702 vsp_2 Borrelia recurrentis A1 vsp protein YP_002223784.1 25266 D 412418 CDS YP_002223785.1 203288434 6919704 27359..28471 1 NC_011258.1 vlp protein, delta subfamily 28471 vlp-d_3 6919704 vlp-d_3 Borrelia recurrentis A1 vlp protein, delta subfamily YP_002223785.1 27359 D 412418 CDS YP_002223786.1 203288435 6919705 28749..29330 1 NC_011258.1 vsp protein 29330 vsp_3 6919705 vsp_3 Borrelia recurrentis A1 vsp protein YP_002223786.1 28749 D 412418 CDS YP_002223799.1 203288437 6919714 complement(850..1386) 1 NC_011260.1 bdr proitein 1386 bdr_1 6919714 bdr_1 Borrelia recurrentis A1 bdr proitein YP_002223799.1 850 R 412418 CDS YP_002223800.1 203288438 6919717 4153..4662 1 NC_011260.1 Probable lipoprotein (SpLip); lipoprotein 4662 mlpA 6919717 mlpA Borrelia recurrentis A1 lipoprotein YP_002223800.1 4153 D 412418 CDS YP_002223801.1 203288439 6919718 4952..5638 1 NC_011260.1 hypothetical protein 5638 6919718 BRE_2006 Borrelia recurrentis A1 hypothetical protein YP_002223801.1 4952 D 412418 CDS YP_002223802.1 203288440 6919719 5642..6217 1 NC_011260.1 plasmid partitioning associated protein-1 6217 ppap1_1 6919719 ppap1_1 Borrelia recurrentis A1 plasmid partitioning associated protein-1 YP_002223802.1 5642 D 412418 CDS YP_002223803.1 203288441 6919720 6193..6945 1 NC_011260.1 PF32 plasmid partition protein 6945 pf32_1 6919720 pf32_1 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223803.1 6193 D 412418 CDS YP_002223804.1 203288442 6919721 6985..7557 1 NC_011260.1 PF49 plasmid partition protein 7557 pf49_1 6919721 pf49_1 Borrelia recurrentis A1 PF49 plasmid partition protein YP_002223804.1 6985 D 412418 CDS YP_002223805.1 203288443 6919722 8261..8842 1 NC_011260.1 vsp protein 8842 vsp_1 6919722 vsp_1 Borrelia recurrentis A1 vsp protein YP_002223805.1 8261 D 412418 CDS YP_002223806.1 203288444 6919725 complement(10520..11002) 1 NC_011260.1 bdr proitein 11002 bdr_2 6919725 bdr_2 Borrelia recurrentis A1 bdr proitein YP_002223806.1 10520 R 412418 CDS YP_002223807.1 203288445 6919727 complement(12372..12911) 1 NC_011260.1 family 115-like protein 12911 6919727 BRE_2015 Borrelia recurrentis A1 family 115-like protein YP_002223807.1 12372 R 412418 CDS YP_002223808.1 203288446 6919731 complement(15588..16121) 1 NC_011260.1 PF-49 plasmid partition protein 16121 pf49_2 6919731 pf49_2 Borrelia recurrentis A1 PF-49 plasmid partition protein YP_002223808.1 15588 R 412418 CDS YP_002223809.1 203288447 6919732 complement(16163..16906) 1 NC_011260.1 PF32 plasmid partition protein 16906 pf32_2 6919732 pf32_2 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223809.1 16163 R 412418 CDS YP_002223810.1 203288448 6919733 complement(16882..17442) 1 NC_011260.1 plasmid partitioning associated protein-1 17442 ppap1_2 6919733 ppap1_2 Borrelia recurrentis A1 plasmid partitioning associated protein-1 YP_002223810.1 16882 R 412418 CDS YP_002223811.1 203288449 6919734 complement(17452..18582) 1 NC_011260.1 plasmid partioning associated protein 2 18582 ppap2 6919734 ppap2 Borrelia recurrentis A1 plasmid partioning associated protein 2 YP_002223811.1 17452 R 412418 CDS YP_002223812.1 203288450 6919738 complement(20104..20856) 1 NC_011260.1 BppC 20856 bppC_2 6919738 bppC_2 Borrelia recurrentis A1 BppC YP_002223812.1 20104 R 412418 CDS YP_002223813.1 203288451 6919739 complement(21288..21707) 1 NC_011260.1 Probable lipoprotein (SpLip); MlpL-like protein; lipoprotein 21707 6919739 BRE_2027 Borrelia recurrentis A1 MlpL-like protein; lipoprotein YP_002223813.1 21288 R 412418 CDS YP_002223814.1 203288452 6919742 24197..24754 1 NC_011260.1 bdr proitein 24754 bdr_3 6919742 bdr_3 Borrelia recurrentis A1 bdr proitein YP_002223814.1 24197 D 412418 CDS YP_002223815.1 203288453 6919748 complement(28788..29780) 1 NC_011260.1 vlp protein, delta subfamily 29780 vlp-d_1 6919748 vlp-d_1 Borrelia recurrentis A1 vlp protein, delta subfamily YP_002223815.1 28788 R 412418 CDS YP_002223816.1 203288454 6919749 complement(30387..31412) 1 NC_011260.1 vlp protein, gamma subfamily 31412 vlp-c 6919749 vlp-c Borrelia recurrentis A1 vlp protein, gamma subfamily YP_002223816.1 30387 R 412418 CDS YP_002223817.1 203288455 6919750 31680..32270 1 NC_011260.1 bdr proitein 32270 bdr_4 6919750 bdr_4 Borrelia recurrentis A1 bdr proitein YP_002223817.1 31680 D 412418 CDS YP_002223818.1 203288456 6919752 complement(33740..34501) 1 NC_011260.1 PF32 plasmid partition protein 34501 pf32_3 6919752 pf32_3 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223818.1 33740 R 412418 CDS YP_002223819.1 203288457 6919753 complement(34477..35052) 1 NC_011260.1 plasmid partitioning associated protein-1 35052 ppap1_3 6919753 ppap1_3 Borrelia recurrentis A1 plasmid partitioning associated protein-1 YP_002223819.1 34477 R 412418 CDS YP_002223820.1 203288458 6919754 complement(35125..35808) 1 NC_011260.1 hypothetical protein 35808 6919754 BRE_2042 Borrelia recurrentis A1 hypothetical protein YP_002223820.1 35125 R 412418 CDS YP_002223821.1 203288459 6919755 36945..37919 1 NC_011260.1 vlp protein, alpha subfamily 37919 vlp-a 6919755 vlp-a Borrelia recurrentis A1 vlp protein, alpha subfamily YP_002223821.1 36945 D 412418 CDS YP_002223822.1 203288460 6919756 38550..39194 1 NC_011260.1 Probable lipoprotein (SpLip); vsp protein 39194 vsp_2 6919756 vsp_2 Borrelia recurrentis A1 vsp protein YP_002223822.1 38550 D 412418 CDS YP_002223823.1 203288461 6919757 39440..40534 1 NC_011260.1 vlp protein, delta subfamily 40534 vlp-d_2 6919757 vlp-d_2 Borrelia recurrentis A1 vlp protein, delta subfamily YP_002223823.1 39440 D 412418 CDS YP_002223824.1 203288462 6919758 40852..41463 1 NC_011260.1 vsp protein 41463 vsp_3 6919758 vsp_3 Borrelia recurrentis A1 vsp protein YP_002223824.1 40852 D 412418 CDS YP_002223825.1 203288463 6919760 42975..44087 1 NC_011260.1 vlp protein, delta subfamily 44087 vlp-d_3 6919760 vlp-d_3 Borrelia recurrentis A1 vlp protein, delta subfamily YP_002223825.1 42975 D 412418 CDS YP_002223826.1 203288464 6919761 44365..44946 1 NC_011260.1 vsp protein 44946 vsp_4 6919761 vsp_4 Borrelia recurrentis A1 vsp protein YP_002223826.1 44365 D 412418 CDS YP_002223881.1 203288466 6919773 complement(166..681) 1 NC_011263.1 PF49 plasmid partition protein 681 pf49 6919773 pf49 Borrelia recurrentis A1 PF49 plasmid partition protein YP_002223881.1 166 R 412418 CDS YP_002223882.1 203288467 6919770 complement(744..1505) 1 NC_011263.1 PF32 plasmid partition protein 1505 pf32 6919770 pf32 Borrelia recurrentis A1 PF32 plasmid partition protein YP_002223882.1 744 R 412418 CDS YP_002223883.1 203288468 6919771 2242..2766 1 NC_011263.1 hypothetical protein 2766 6919771 BRE_7003 Borrelia recurrentis A1 hypothetical protein YP_002223883.1 2242 D 412418 CDS