-- dump date   	20140619_004349
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
521010000001	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000002	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000003	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000004	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000005	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000006	Protein of unknown function (DUF1506); Region: DUF1506; pfam07405
521010000007	Borrelia burgdorferi protein of unknown function (DUF764); Region: DUF764; pfam05561
521010000008	Borrelia burgdorferi protein of unknown function (DUF787); Region: DUF787; pfam05619
521010000009	Protein of unknown function (DUF1463); Region: DUF1463; pfam07316
521010000010	Protein of unknown function (DUF1473); Region: DUF1473; pfam07341
521010000011	Protein of unknown function (DUF1322); Region: DUF1322; pfam07032
521010000012	Borrelia burgdorferi protein of unknown function (DUF759); Region: DUF759; pfam05537
521010000013	Borrelia burgdorferi protein of unknown function (DUF759); Region: DUF759; pfam05537
521010000014	Borrelia burgdorferi protein of unknown function (DUF792); Region: DUF792; pfam05632
521010000015	Protein of unknown function (DUF693); Region: DUF693; pfam05113
521010000016	Borrelia burgdorferi protein of unknown function (DUF777); Region: DUF777; pfam05606
521010000017	Protein of unknown function (DUF1371); Region: DUF1371; pfam07115
521010000018	DUF276; Region: DUF276; pfam03434
521010000019	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000020	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000021	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000022	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000023	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000024	Membrane-bound metallopeptidase [Cell division and chromosome partitioning]; Region: COG4942
521010000025	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000026	ERF superfamily; Region: ERF; pfam04404
521010000027	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000028	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000029	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000030	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000031	P-loop; other site
521010000032	Magnesium ion binding site [ion binding]; other site
521010000033	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000034	Magnesium ion binding site [ion binding]; other site
521010000035	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000036	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000037	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000038	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000039	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000040	active site
521010000041	catalytic residues [active]
521010000042	DNA binding site [nucleotide binding]
521010000043	Int/Topo IB signature motif; other site
521010000044	Erp protein C-terminus; Region: Erp_C; pfam06780
521010000045	Protein of unknown function (DUF643); Region: DUF643; pfam04867
521010000046	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000047	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000048	Terminase-like family; Region: Terminase_6; pfam03237
521010000049	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000050	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000051	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000052	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000053	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000054	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000055	Domain of unknown function (DUF3890); Region: DUF3890; pfam13029
521010000056	Protein of unknown function (DUF1506); Region: DUF1506; pfam07405
521010000057	Borrelia burgdorferi protein of unknown function (DUF764); Region: DUF764; pfam05561
521010000058	Borrelia burgdorferi protein of unknown function (DUF787); Region: DUF787; pfam05619
521010000059	Protein of unknown function (DUF1463); Region: DUF1463; pfam07316
521010000060	Protein of unknown function (DUF1473); Region: DUF1473; pfam07341
521010000061	Protein of unknown function (DUF1322); Region: DUF1322; pfam07032
521010000062	Borrelia burgdorferi protein of unknown function (DUF759); Region: DUF759; pfam05537
521010000063	Borrelia burgdorferi protein of unknown function (DUF792); Region: DUF792; pfam05632
521010000064	Protein of unknown function (DUF693); Region: DUF693; pfam05113
521010000065	Borrelia burgdorferi protein of unknown function (DUF777); Region: DUF777; pfam05606
521010000066	Protein of unknown function (DUF1371); Region: DUF1371; pfam07115
521010000067	DUF276; Region: DUF276; pfam03434
521010000068	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000069	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000070	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000071	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000072	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000073	Protein of unknown function (DUF1664); Region: DUF1664; pfam07889
521010000074	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000075	ERF superfamily; Region: ERF; pfam04404
521010000076	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000077	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000078	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000079	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000080	P-loop; other site
521010000081	Magnesium ion binding site [ion binding]; other site
521010000082	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000083	Magnesium ion binding site [ion binding]; other site
521010000084	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000085	Protein of unknown function (DUF3584); Region: DUF3584; pfam12128
521010000086	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000087	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000088	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000089	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000090	active site
521010000091	catalytic residues [active]
521010000092	DNA binding site [nucleotide binding]
521010000093	Int/Topo IB signature motif; other site
521010000094	Borrelia outer surface protein E; Region: OspE; pfam02471
521010000095	Erp protein C-terminus; Region: Erp_C; pfam06780
521010000096	Protein of unknown function (DUF643); Region: DUF643; pfam04867
521010000097	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000098	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000099	Terminase-like family; Region: Terminase_6; pfam03237
521010000100	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000101	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000102	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000103	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000104	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000105	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000106	Domain of unknown function (DUF3890); Region: DUF3890; pfam13029
521010000107	Protein of unknown function (DUF1506); Region: DUF1506; pfam07405
521010000108	Borrelia burgdorferi protein of unknown function (DUF764); Region: DUF764; pfam05561
521010000109	Borrelia burgdorferi protein of unknown function (DUF787); Region: DUF787; pfam05619
521010000110	Protein of unknown function (DUF1463); Region: DUF1463; pfam07316
521010000111	Protein of unknown function (DUF1473); Region: DUF1473; pfam07341
521010000112	Protein of unknown function (DUF1322); Region: DUF1322; pfam07032
521010000113	Borrelia burgdorferi protein of unknown function (DUF759); Region: DUF759; pfam05537
521010000114	Borrelia burgdorferi protein of unknown function (DUF792); Region: DUF792; pfam05632
521010000115	Protein of unknown function (DUF693); Region: DUF693; pfam05113
521010000116	Borrelia burgdorferi protein of unknown function (DUF777); Region: DUF777; pfam05606
521010000117	Protein of unknown function (DUF1371); Region: DUF1371; pfam07115
521010000118	DUF276; Region: DUF276; pfam03434
521010000119	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000120	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000121	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000122	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000123	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000124	ERF superfamily; Region: ERF; pfam04404
521010000125	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000126	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000127	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000128	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000129	P-loop; other site
521010000130	Magnesium ion binding site [ion binding]; other site
521010000131	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000132	Magnesium ion binding site [ion binding]; other site
521010000133	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000134	Domain of unknown function (DUF4407); Region: DUF4407; pfam14362
521010000135	YqaJ-like viral recombinase domain; Region: YqaJ; cl09232
521010000136	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000137	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000138	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000139	active site
521010000140	catalytic residues [active]
521010000141	DNA binding site [nucleotide binding]
521010000142	Int/Topo IB signature motif; other site
521010000143	Erp protein C-terminus; Region: Erp_C; pfam06780
521010000144	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000145	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000146	Terminase-like family; Region: Terminase_6; pfam03237
521010000147	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000148	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000149	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000150	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000151	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000152	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000153	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000154	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000155	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000156	ERF superfamily; Region: ERF; pfam04404
521010000157	ERF superfamily; Region: ERF; pfam04404
521010000158	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000159	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000160	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000161	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000162	P-loop; other site
521010000163	Magnesium ion binding site [ion binding]; other site
521010000164	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000165	Magnesium ion binding site [ion binding]; other site
521010000166	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000167	AAA domain; Region: AAA_13; pfam13166
521010000168	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000169	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000170	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000171	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000172	active site
521010000173	catalytic residues [active]
521010000174	DNA binding site [nucleotide binding]
521010000175	Int/Topo IB signature motif; other site
521010000176	Exported protein precursor (EppA/BapA); Region: EppA_BapA; pfam07268
521010000177	TM2 domain; Region: TM2; pfam05154
521010000178	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000179	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000180	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000181	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000182	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000183	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000184	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000185	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000186	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000187	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000188	Magnesium ion binding site [ion binding]; other site
521010000189	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000190	Haemolysin XhlA; Region: XhlA; pfam10779
521010000191	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000192	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000193	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000194	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000195	Protein of unknown function (DUF643); Region: DUF643; pfam04867
521010000196	Erp protein C-terminus; Region: Erp_C; pfam06780
521010000197	Borrelia outer surface protein E; Region: OspE; pfam02471
521010000198	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
521010000199	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000200	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000201	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000202	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
521010000203	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000204	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000205	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000206	P-loop; other site
521010000207	Magnesium ion binding site [ion binding]; other site
521010000208	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000209	Magnesium ion binding site [ion binding]; other site
521010000210	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000211	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000212	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000213	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000214	Protein of unknown function (DUF1664); Region: DUF1664; pfam07889
521010000215	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000216	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000217	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000218	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000219	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000220	DUF276; Region: DUF276; pfam03434
521010000221	Protein of unknown function (DUF1371); Region: DUF1371; pfam07115
521010000222	Borrelia burgdorferi protein of unknown function (DUF777); Region: DUF777; pfam05606
521010000223	Protein of unknown function (DUF1506); Region: DUF1506; pfam07405
521010000224	Domain of unknown function (DUF3890); Region: DUF3890; pfam13029
521010000225	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000226	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000227	Terminase-like family; Region: Terminase_6; pfam03237
521010000228	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000229	Terminase-like family; Region: Terminase_6; pfam03237
521010000230	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000231	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000232	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000233	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000234	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000235	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000236	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000237	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000238	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000239	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000240	P-loop; other site
521010000241	Magnesium ion binding site [ion binding]; other site
521010000242	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000243	Magnesium ion binding site [ion binding]; other site
521010000244	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000245	UV radiation resistance protein and autophagy-related subunit 14; Region: Atg14; pfam10186
521010000246	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000247	Exported protein precursor (EppA/BapA); Region: EppA_BapA; pfam07268
521010000248	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000249	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000250	Terminase-like family; Region: Terminase_6; pfam03237
521010000251	Acylphosphatase; Region: Acylphosphatase; cl00551
521010000252	cellobiose phosphotransferase system IIC component; Reviewed; Region: celD; PRK09592
521010000253	Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]; Region: CelB; cl17295
521010000254	PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_lac; cd00215
521010000255	methionine cluster; other site
521010000256	active site
521010000257	phosphorylation site [posttranslational modification]
521010000258	metal binding site [ion binding]; metal-binding site
521010000259	PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N; Region: PTS_IIB_chitobiose_lichenan; cd05564
521010000260	active site
521010000261	Uncharacterized conserved protein [Function unknown]; Region: COG3589
521010000262	Bacterial protein of unknown function (DUF871); Region: DUF871; pfam05913
521010000263	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000264	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000265	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000266	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000267	P-loop; other site
521010000268	Magnesium ion binding site [ion binding]; other site
521010000269	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000270	Magnesium ion binding site [ion binding]; other site
521010000271	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000272	Protein of unknown function (DUF1187); Region: DUF1187; cl11638
521010000273	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
521010000274	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
521010000275	peptide binding site [polypeptide binding]; other site
521010000276	inosine 5-monophosphate dehydrogenase; Validated; Region: PRK06843
521010000277	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
521010000278	active site
521010000279	GMP synthase; Reviewed; Region: guaA; PRK00074
521010000280	Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742
521010000281	AMP/PPi binding site [chemical binding]; other site
521010000282	candidate oxyanion hole; other site
521010000283	catalytic triad [active]
521010000284	potential glutamine specificity residues [chemical binding]; other site
521010000285	The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997
521010000286	ATP Binding subdomain [chemical binding]; other site
521010000287	Ligand Binding sites [chemical binding]; other site
521010000288	Dimerization subdomain; other site
521010000289	Lipoprotein; Region: Lipoprotein_6; pfam01441
521010000290	Permease family; Region: Xan_ur_permease; pfam00860
521010000291	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
521010000292	Predicted Zn peptidase [Amino acid transport and metabolism]; Region: COG2856
521010000293	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
521010000294	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
521010000295	PTS system, glucose-specific IIBC component; Region: PTS-II-BC-glcB; TIGR02002
521010000296	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
521010000297	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
521010000298	active site turn [active]
521010000299	phosphorylation site [posttranslational modification]
521010000300	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000301	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000302	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000303	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000304	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000305	Domain of unknown function (DUF3890); Region: DUF3890; pfam13029
521010000306	Protein of unknown function (DUF1506); Region: DUF1506; pfam07405
521010000307	Borrelia burgdorferi protein of unknown function (DUF764); Region: DUF764; pfam05561
521010000308	Borrelia burgdorferi protein of unknown function (DUF787); Region: DUF787; pfam05619
521010000309	Protein of unknown function (DUF1463); Region: DUF1463; pfam07316
521010000310	Protein of unknown function (DUF1473); Region: DUF1473; pfam07341
521010000311	Protein of unknown function (DUF1322); Region: DUF1322; pfam07032
521010000312	Borrelia burgdorferi protein of unknown function (DUF759); Region: DUF759; pfam05537
521010000313	Borrelia burgdorferi protein of unknown function (DUF792); Region: DUF792; pfam05632
521010000314	Protein of unknown function (DUF693); Region: DUF693; pfam05113
521010000315	Borrelia burgdorferi protein of unknown function (DUF777); Region: DUF777; pfam05606
521010000316	Protein of unknown function (DUF1371); Region: DUF1371; pfam07115
521010000317	DUF276; Region: DUF276; pfam03434
521010000318	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000319	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000320	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000321	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000322	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000323	Uncharacterized conserved protein [Function unknown]; Region: COG2433
521010000324	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000325	ERF superfamily; Region: ERF; pfam04404
521010000326	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000327	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000328	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000329	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000330	P-loop; other site
521010000331	Magnesium ion binding site [ion binding]; other site
521010000332	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000333	Magnesium ion binding site [ion binding]; other site
521010000334	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000335	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
521010000336	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000337	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000338	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000339	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000340	active site
521010000341	catalytic residues [active]
521010000342	DNA binding site [nucleotide binding]
521010000343	Int/Topo IB signature motif; other site
521010000344	Erp protein C-terminus; Region: Erp_C; pfam06780
521010000345	Protein of unknown function (DUF643); Region: DUF643; pfam04867
521010000346	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000347	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000348	Terminase-like family; Region: Terminase_6; pfam03237
521010000349	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000350	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000351	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000352	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000353	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000354	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000355	Domain of unknown function (DUF3890); Region: DUF3890; pfam13029
521010000356	Protein of unknown function (DUF1506); Region: DUF1506; pfam07405
521010000357	Borrelia burgdorferi protein of unknown function (DUF764); Region: DUF764; pfam05561
521010000358	Borrelia burgdorferi protein of unknown function (DUF787); Region: DUF787; pfam05619
521010000359	Protein of unknown function (DUF1463); Region: DUF1463; pfam07316
521010000360	Protein of unknown function (DUF1473); Region: DUF1473; pfam07341
521010000361	Protein of unknown function (DUF1322); Region: DUF1322; pfam07032
521010000362	Borrelia burgdorferi protein of unknown function (DUF759); Region: DUF759; pfam05537
521010000363	Borrelia burgdorferi protein of unknown function (DUF792); Region: DUF792; pfam05632
521010000364	Protein of unknown function (DUF693); Region: DUF693; pfam05113
521010000365	Borrelia burgdorferi protein of unknown function (DUF777); Region: DUF777; pfam05606
521010000366	Protein of unknown function (DUF1371); Region: DUF1371; pfam07115
521010000367	DUF276; Region: DUF276; pfam03434
521010000368	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000369	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000370	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000371	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000372	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000373	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000374	ERF superfamily; Region: ERF; pfam04404
521010000375	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000376	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000377	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000378	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000379	Magnesium ion binding site [ion binding]; other site
521010000380	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000381	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
521010000382	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000383	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000384	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000385	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000386	active site
521010000387	catalytic residues [active]
521010000388	DNA binding site [nucleotide binding]
521010000389	Int/Topo IB signature motif; other site
521010000390	Erp protein C-terminus; Region: Erp_C; pfam06780
521010000391	Protein of unknown function (DUF643); Region: DUF643; pfam04867
521010000392	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000393	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000394	Terminase-like family; Region: Terminase_6; pfam03237
521010000395	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000396	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000397	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000398	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000399	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000400	Domain of unknown function (DUF3890); Region: DUF3890; pfam13029
521010000401	Protein of unknown function (DUF1506); Region: DUF1506; pfam07405
521010000402	Borrelia burgdorferi protein of unknown function (DUF764); Region: DUF764; pfam05561
521010000403	Borrelia burgdorferi protein of unknown function (DUF787); Region: DUF787; pfam05619
521010000404	Protein of unknown function (DUF1463); Region: DUF1463; pfam07316
521010000405	Protein of unknown function (DUF1473); Region: DUF1473; pfam07341
521010000406	Protein of unknown function (DUF1322); Region: DUF1322; pfam07032
521010000407	Borrelia burgdorferi protein of unknown function (DUF759); Region: DUF759; pfam05537
521010000408	Borrelia burgdorferi protein of unknown function (DUF792); Region: DUF792; pfam05632
521010000409	Protein of unknown function (DUF693); Region: DUF693; pfam05113
521010000410	Borrelia burgdorferi protein of unknown function (DUF777); Region: DUF777; pfam05606
521010000411	Protein of unknown function (DUF1371); Region: DUF1371; pfam07115
521010000412	DUF276; Region: DUF276; pfam03434
521010000413	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000414	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000415	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000416	Borrelia burgdorferi BBR25 lipoprotein; Region: Borrelia_lipo_2; pfam06238
521010000417	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000418	Mlp lipoprotein family; Region: Mlp; pfam03304
521010000419	ERF superfamily; Region: ERF; pfam04404
521010000420	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000421	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000422	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000423	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000424	P-loop; other site
521010000425	Magnesium ion binding site [ion binding]; other site
521010000426	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000427	Magnesium ion binding site [ion binding]; other site
521010000428	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000429	AAA domain; Region: AAA_13; pfam13166
521010000430	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000431	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000432	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000433	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000434	active site
521010000435	catalytic residues [active]
521010000436	DNA binding site [nucleotide binding]
521010000437	Int/Topo IB signature motif; other site
521010000438	TM2 domain; Region: TM2; pfam05154
521010000439	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000440	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000441	Terminase-like family; Region: Terminase_6; pfam03237
521010000442	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000443	Z1 domain; Region: Z1; pfam10593
521010000444	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000445	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000446	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000447	P-loop; other site
521010000448	Magnesium ion binding site [ion binding]; other site
521010000449	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000450	Magnesium ion binding site [ion binding]; other site
521010000451	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000452	ERF superfamily; Region: ERF; pfam04404
521010000453	Exported protein precursor (EppA/BapA); Region: EppA_BapA; pfam07268
521010000454	V-type ATP synthase subunit I; Validated; Region: PRK05771
521010000455	putative allyl alcohol dehydrogenase; Provisional; Region: PLN03154
521010000456	Borrelia burgdorferi REV protein; Region: Borrelia_REV; pfam03978
521010000457	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
521010000458	active site
521010000459	catalytic residues [active]
521010000460	DNA binding site [nucleotide binding]
521010000461	Int/Topo IB signature motif; other site
521010000462	YqaJ-like viral recombinase domain; Region: YqaJ; pfam09588
521010000463	Uncharacterized protein family (ORF7) DUF; Region: DUF244; pfam03112
521010000464	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000465	Predicted membrane protein [Function unknown]; Region: XynA; COG2314
521010000466	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000467	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000468	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000469	CobQ/CobB/MinD/ParA nucleotide binding domain; Region: CbiA; pfam01656
521010000470	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000471	P-loop; other site
521010000472	Magnesium ion binding site [ion binding]; other site
521010000473	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000474	valyl-tRNA synthetase-like protein; Provisional; Region: PTZ00419
521010000475	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000476	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cl17904
521010000477	Type II restriction enzyme, methylase subunits [Defense mechanisms]; Region: COG1002
521010000478	Exported protein precursor (EppA/BapA); Region: EppA_BapA; pfam07268
521010000479	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000480	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000481	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000482	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000483	P-loop; other site
521010000484	Magnesium ion binding site [ion binding]; other site
521010000485	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000486	Magnesium ion binding site [ion binding]; other site
521010000487	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000488	Borrelia membrane protein P13; Region: Borrelia_P13; pfam05628
521010000489	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000490	Borrelia hemolysin accessory protein; Region: BLYB; pfam05289
521010000491	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000492	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000493	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000494	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000495	P-loop; other site
521010000496	Magnesium ion binding site [ion binding]; other site
521010000497	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000498	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000499	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000500	Nucleoside phosphorylase [Nucleotide transport and metabolism]; Region: Pfs; COG0775
521010000501	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000502	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000503	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG0675
521010000504	Helix-turn-helix domain; Region: HTH_OrfB_IS605; pfam12323
521010000505	Probable transposase; Region: OrfB_IS605; pfam01385
521010000506	transposase, IS605 OrfB family, central region; Region: tspaseT_teng_C; TIGR01766
521010000507	Borrelia membrane protein P13; Region: Borrelia_P13; pfam05628
521010000508	Erp protein C-terminus; Region: Erp_C; pfam06780
521010000509	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000510	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000511	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2859
521010000512	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000513	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000514	adenine deaminase; Region: ade; TIGR01178
521010000515	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
521010000516	Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source...; Region: AdeC; cd01295
521010000517	active site
521010000518	Adenine deaminase C-terminal domain; Region: Adenine_deam_C; pfam13382
521010000519	Borrelia membrane protein P13; Region: Borrelia_P13; pfam05628
521010000520	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000521	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000522	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000523	P-loop; other site
521010000524	Magnesium ion binding site [ion binding]; other site
521010000525	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000526	Magnesium ion binding site [ion binding]; other site
521010000527	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000528	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000529	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000530	TcdA/TcdB pore forming domain; Region: TcdA_TcdB_pore; pfam12920
521010000531	Borrelia membrane protein P13; Region: Borrelia_P13; pfam05628
521010000532	Protein of unknown function (DUF1371); Region: DUF1371; pfam07115
521010000533	DUF276; Region: DUF276; pfam03434
521010000534	Protein of unknown function (DUF735); Region: DUF735; pfam05246
521010000535	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000536	Protein of unknown function (DUF685); Region: DUF685; pfam05085
521010000537	holin, BlyA family; Region: Holin_BlyA; cl15434
521010000538	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000539	Borrelia lipoprotein; Region: Lipoprotein_1; pfam00820
521010000540	Borrelia lipoprotein; Region: Lipoprotein_1; pfam00820
521010000541	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000542	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000543	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000544	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000545	P-loop; other site
521010000546	Magnesium ion binding site [ion binding]; other site
521010000547	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000548	Magnesium ion binding site [ion binding]; other site
521010000549	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000550	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000551	Decorin binding protein; Region: Decorin_bind; pfam02352
521010000552	Decorin binding protein; Region: Decorin_bind; pfam02352
521010000553	Protein of unknown function, DUF603; Region: DUF603; pfam04645
521010000554	Phage terminase large subunit; Region: Terminase_3; cl12054
521010000555	Terminase-like family; Region: Terminase_6; pfam03237
521010000556	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
521010000557	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
521010000558	peptide binding site [polypeptide binding]; other site
521010000559	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
521010000560	Protein of unknown function (DUF1357); Region: DUF1357; pfam07094
521010000561	Lyme disease proteins of unknown function; Region: DUF228; pfam02989
521010000562	Domain of unknown function (DUF3890); Region: DUF3890; pfam13029
521010000563	Protein of unknown function (DUF1506); Region: DUF1506; pfam07405
521010000564	Borrelia burgdorferi protein of unknown function (DUF764); Region: DUF764; pfam05561
521010000565	Borrelia burgdorferi protein of unknown function (DUF787); Region: DUF787; pfam05619
521010000566	Protein of unknown function (DUF1463); Region: DUF1463; pfam07316
521010000567	Protein of unknown function (DUF1473); Region: DUF1473; pfam07341
521010000568	Protein of unknown function (DUF1322); Region: DUF1322; pfam07032
521010000569	Borrelia burgdorferi protein of unknown function (DUF792); Region: DUF792; pfam05632
521010000570	Protein of unknown function (DUF693); Region: DUF693; pfam05113
521010000571	Borrelia burgdorferi protein of unknown function (DUF777); Region: DUF777; pfam05606
521010000572	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714
521010000573	OMS28 porin; Region: OMS28_porin; pfam03532
521010000574	FAD-dependent thymidylate synthase; Reviewed; Region: thyX; PRK00847
521010000575	Type II restriction enzyme, methylase subunits [Defense mechanisms]; Region: COG1002
521010000576	Borrelia membrane protein P13; Region: Borrelia_P13; pfam05628
521010000577	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010000578	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010000579	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000580	P-loop; other site
521010000581	Magnesium ion binding site [ion binding]; other site
521010000582	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010000583	Magnesium ion binding site [ion binding]; other site
521010000584	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000585	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000586	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000587	phage-related protein, HI1409 family; Region: phge_rel_HI1409; TIGR01555
521010000588	Phage terminase large subunit [General function prediction only]; Region: XtmB; COG1783
521010000589	Right handed beta helix region; Region: Beta_helix; pfam13229
521010000590	Borrelia orf-D family; Region: Borrelia_orfD; pfam02999
521010000591	Protein of unknown function, DUF261; Region: DUF261; pfam03196
521010000592	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000593	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010000594	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010000595	DnaB-like helicase C terminal domain; Region: DnaB_C; pfam03796
521010000596	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
521010000597	Walker A motif; other site
521010000598	ATP binding site [chemical binding]; other site
521010000599	Walker B motif; other site
521010000600	AAA domain; Region: AAA_13; pfam13166
521010000601	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
521010000602	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; cl07971
521010000603	UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]; Region: COG4284
521010000604	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
521010000605	Phosphomannomutase [Carbohydrate transport and metabolism]; Region: {ManB}; COG1109
521010000606	The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine...; Region: phosphohexomutase; cl03757
521010000607	active site
521010000608	substrate binding site [chemical binding]; other site
521010000609	metal binding site [ion binding]; metal-binding site
521010000610	tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282
521010000611	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
521010000612	active site
521010000613	HIGH motif; other site
521010000614	dimer interface [polypeptide binding]; other site
521010000615	KMSKS motif; other site
521010000616	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628
521010000617	Domain of unknown function DUF20; Region: UPF0118; pfam01594
521010000618	haloacid dehalogenase-like hydrolase; Region: HAD; cl17202
521010000619	TIGR00159 family protein; Region: TIGR00159
521010000620	DisA bacterial checkpoint controller nucleotide-binding; Region: DisA_N; pfam02457
521010000621	YbbR-like protein; Region: YbbR; pfam07949
521010000622	phosphopantetheine--protein transferase domain; Region: pantethn_trn; TIGR00556
521010000623	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1655
521010000624	Uncharacterized protein conserved in bacteria (DUF2225); Region: DUF2225; pfam09986
521010000625	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
521010000626	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
521010000627	dimerization interface 3.5A [polypeptide binding]; other site
521010000628	active site
521010000629	Uracil-DNA glycosylases (UDG) and related enzymes; Region: UDG_like; cl00483
521010000630	primosomal protein N' Region: priA; TIGR00595
521010000631	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
521010000632	ATP binding site [chemical binding]; other site
521010000633	putative Mg++ binding site [ion binding]; other site
521010000634	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
521010000635	nucleotide binding region [chemical binding]; other site
521010000636	ATP-binding site [chemical binding]; other site
521010000637	Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway; Region: UMPK; cd02023
521010000638	Uridine kinase [Nucleotide transport and metabolism]; Region: Udk; COG0572
521010000639	Sugar specificity; other site
521010000640	Pyrimidine base specificity; other site
521010000641	ATP-binding site [chemical binding]; other site
521010000642	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
521010000643	active site residue [active]
521010000644	Uncharacterized conserved protein [Function unknown]; Region: COG1284
521010000645	Uncharacterized BCR, YitT family COG1284; Region: DUF161; pfam02588
521010000646	Uncharacterized protein conserved in bacteria (DUF2179); Region: DUF2179; pfam10035
521010000647	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
521010000648	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
521010000649	active site
521010000650	Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent...; Region: Pyrophosphate_PFK; cd00765
521010000651	pyrophosphate-dependent phosphofructokinase; Region: PLN02251
521010000652	active site
521010000653	pyrophosphate binding site [ion binding]; other site
521010000654	dimerization interface [polypeptide binding]; other site
521010000655	fructose-6-phosphate binding site; other site
521010000656	Queuosine biosynthesis protein; Region: Queuosine_synth; pfam02547
521010000657	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Region: queA; TIGR00113
521010000658	Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080
521010000659	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010000660	Walker A motif; other site
521010000661	ATP binding site [chemical binding]; other site
521010000662	Walker B motif; other site
521010000663	arginine finger; other site
521010000664	Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491
521010000665	Holliday junction DNA helicase RuvA; Provisional; Region: ruvA; PRK13901
521010000666	RuvA N terminal domain; Region: RuvA_N; pfam01330
521010000667	Reversibly glycosylated polypeptide; Region: RGP; cl07847
521010000668	Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]; Region: COG2133
521010000669	hypothetical protein; Validated; Region: PRK00110
521010000670	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]; Region: FolD; COG0190
521010000671	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763
521010000672	NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080
521010000673	homodimer interface [polypeptide binding]; other site
521010000674	NADP binding site [chemical binding]; other site
521010000675	substrate binding site [chemical binding]; other site
521010000676	Uncharacterized BCR, YaiI/YqxD family COG1671; Region: DUF188; cl00727
521010000677	signal peptidase I, bacterial type; Region: sigpep_I_bact; TIGR02227
521010000678	Signal peptidase I [Intracellular trafficking and secretion]; Region: LepB; COG0681
521010000679	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
521010000680	Catalytic site [active]
521010000681	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
521010000682	PEGA domain; Region: PEGA; pfam08308
521010000683	Formylglycine-generating sulfatase enzyme; Region: FGE-sulfatase; pfam03781
521010000684	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
521010000685	SmpB-tmRNA interface; other site
521010000686	Borrelia membrane protein P13; Region: Borrelia_P13; pfam05628
521010000687	DNA topoisomerase IV subunit A; Provisional; Region: PRK09631
521010000688	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cl00148
521010000689	CAP-like domain; other site
521010000690	active site
521010000691	primary dimer interface [polypeptide binding]; other site
521010000692	DNA topoisomerase IV subunit B; Reviewed; Region: PRK05559
521010000693	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075
521010000694	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
521010000695	anchoring element; other site
521010000696	dimer interface [polypeptide binding]; other site
521010000697	ATP binding site [chemical binding]; other site
521010000698	TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands...; Region: TOPRIM_TopoIIA_like; cd01030
521010000699	active site
521010000700	putative metal-binding site [ion binding]; other site
521010000701	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
521010000702	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
521010000703	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
521010000704	putative acyl-acceptor binding pocket; other site
521010000705	PPIC-type PPIASE domain; Region: Rotamase_2; cl08278
521010000706	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
521010000707	Methyltransferase, chemotaxis proteins; Region: MeTrc; smart00138
521010000708	CheR methyltransferase, SAM binding domain; Region: CheR; pfam01739
521010000709	Phosphate uptake regulator [Inorganic ion transport and metabolism]; Region: PhoU; COG0704
521010000710	PhoU domain; Region: PhoU; pfam01895
521010000711	PhoU domain; Region: PhoU; pfam01895
521010000712	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
521010000713	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010000714	Walker A/P-loop; other site
521010000715	ATP binding site [chemical binding]; other site
521010000716	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
521010000717	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010000718	ABC transporter signature motif; other site
521010000719	Walker B; other site
521010000720	D-loop; other site
521010000721	H-loop/switch region; other site
521010000722	bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182
521010000723	RNA/DNA hybrid binding site [nucleotide binding]; other site
521010000724	active site
521010000725	Protein of unknown function (DUF3276); Region: DUF3276; pfam11680
521010000726	Uncharacterized ACR, YhhQ family COG1738; Region: DUF165; cl00756
521010000727	Uncharacterized member of the PurR regulon [General function prediction only]; Region: yhhQ; COG1738
521010000728	rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566
521010000729	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
521010000730	Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Region: UDG_F1; cd10027
521010000731	ligand binding site [chemical binding]; other site
521010000732	active site
521010000733	UGI interface [polypeptide binding]; other site
521010000734	catalytic site [active]
521010000735	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
521010000736	triosephosphate isomerase; Provisional; Region: PRK14565
521010000737	substrate binding site [chemical binding]; other site
521010000738	dimer interface [polypeptide binding]; other site
521010000739	catalytic triad [active]
521010000740	Phosphoglycerate kinase; Region: PGK; pfam00162
521010000741	Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cd00318
521010000742	substrate binding site [chemical binding]; other site
521010000743	hinge regions; other site
521010000744	ADP binding site [chemical binding]; other site
521010000745	catalytic site [active]
521010000746	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]; Region: GapA; COG0057
521010000747	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; pfam00044
521010000748	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
521010000749	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010000750	binding surface
521010000751	Tetratricopeptide repeat; Region: TPR_16; pfam13432
521010000752	TPR motif; other site
521010000753	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010000754	TPR motif; other site
521010000755	binding surface
521010000756	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010000757	TPR repeat; Region: TPR_11; pfam13414
521010000758	binding surface
521010000759	TPR motif; other site
521010000760	FOG: CBS domain [General function prediction only]; Region: COG0517
521010000761	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
521010000762	Transporter associated domain; Region: CorC_HlyC; smart01091
521010000763	Predicted metal-dependent hydrolase [General function prediction only]; Region: COG0319
521010000764	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
521010000765	catalytic residues [active]
521010000766	RNA methyltransferase, RsmE family; Region: TIGR00046
521010000767	RNA methyltransferase; Region: Methyltrans_RNA; cl00611
521010000768	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2815
521010000769	PASTA domain of bacterial serine/threonine kinase pknB-like proteins. PknB is a member of a group of related transmembrane sensor kinases present in many gram positive bacteria, which has been shown to regulate cell shape in Mycobacterium tubercolosis; Region: PASTA_pknB; cd06577
521010000770	PASTA domain of bacterial serine/threonine kinase pknB-like proteins. PknB is a member of a group of related transmembrane sensor kinases present in many gram positive bacteria, which has been shown to regulate cell shape in Mycobacterium tubercolosis; Region: PASTA_pknB; cd06577
521010000771	PASTA domain; Region: PASTA; smart00740
521010000772	methionyl-tRNA formyltransferase; Region: fmt; TIGR00460
521010000773	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
521010000774	putative active site [active]
521010000775	substrate binding site [chemical binding]; other site
521010000776	putative cosubstrate binding site; other site
521010000777	catalytic site [active]
521010000778	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
521010000779	substrate binding site [chemical binding]; other site
521010000780	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
521010000781	active site
521010000782	catalytic residues [active]
521010000783	metal binding site [ion binding]; metal-binding site
521010000784	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
521010000785	Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006
521010000786	X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline; Region: APP; cd01085
521010000787	active site
521010000788	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
521010000789	haloacid dehalogenase-like hydrolase; Region: Hydrolase_3; pfam08282
521010000790	active site
521010000791	motif I; other site
521010000792	motif II; other site
521010000793	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
521010000794	Thermophilic metalloprotease (M29); Region: Peptidase_M29; pfam02073
521010000795	Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]; Region: AmpS; COG2309
521010000796	Divergent PAP2 family; Region: DUF212; cl00855
521010000797	Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]; Region: RnfC; COG4656
521010000798	This domain is found in peptide chain release factors; Region: PCRF; smart00937
521010000799	Protein chain release factor B [Translation, ribosomal structure and biogenesis]; Region: PrfB; COG1186
521010000800	RF-1 domain; Region: RF-1; pfam00472
521010000801	signal recognition particle-docking protein FtsY; Region: ftsY; TIGR00064
521010000802	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
521010000803	ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]; Region: LolE; COG4591
521010000804	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
521010000805	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
521010000806	Walker A/P-loop; other site
521010000807	ATP binding site [chemical binding]; other site
521010000808	Q-loop/lid; other site
521010000809	ABC transporter signature motif; other site
521010000810	Walker B; other site
521010000811	D-loop; other site
521010000812	H-loop/switch region; other site
521010000813	ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]; Region: LolE; COG4591
521010000814	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
521010000815	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
521010000816	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
521010000817	catalytic residue [active]
521010000818	NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Region: IscU; COG0822
521010000819	Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664
521010000820	active site
521010000821	trimerization site [polypeptide binding]; other site
521010000822	Mg chelatase-related protein; Region: TIGR00368
521010000823	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
521010000824	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase; pfam01078
521010000825	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase_2; pfam13335
521010000826	L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases; Region: HicDH_like; cd05291
521010000827	tetramer (dimer of dimers) interface [polypeptide binding]; other site
521010000828	L-lactate dehydrogenase; Region: L-LDH-NAD; TIGR01771
521010000829	NAD binding site [chemical binding]; other site
521010000830	dimer interface [polypeptide binding]; other site
521010000831	substrate binding site [chemical binding]; other site
521010000832	GTP-binding protein LepA; Provisional; Region: PRK05433
521010000833	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
521010000834	Switch I region; other site
521010000835	G2 box; other site
521010000836	putative GEF interaction site [polypeptide binding]; other site
521010000837	G3 box; other site
521010000838	Switch II region; other site
521010000839	GTP/Mg2+ binding site [chemical binding]; other site
521010000840	G4 box; other site
521010000841	G5 box; other site
521010000842	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
521010000843	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
521010000844	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
521010000845	V-type ATP synthase subunit K; Validated; Region: PRK06649
521010000846	V-type ATP synthase subunit I; Validated; Region: PRK05771
521010000847	V-type ATP synthase subunit D; Provisional; Region: PRK02195
521010000848	V-type ATP synthase subunit B; Provisional; Region: PRK02118
521010000849	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
521010000850	V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi...; Region: V_A-ATPase_B; cd01135
521010000851	Walker A motif homologous position; other site
521010000852	Walker B motif; other site
521010000853	V-type ATP synthase subunit A; Provisional; Region: PRK04192
521010000854	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
521010000855	V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction.  The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi...; Region: V_A-ATPase_A; cd01134
521010000856	Walker A motif/ATP binding site; other site
521010000857	Walker B motif; other site
521010000858	V-type ATP synthase subunit E; Provisional; Region: PRK01558
521010000859	Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]; Region: NtpE; COG1390
521010000860	MutS2 family protein; Region: mutS2; TIGR01069
521010000861	ATP-binding cassette domain of MutS2; Region: ABC_MutS2; cd03280
521010000862	Walker A/P-loop; other site
521010000863	ATP binding site [chemical binding]; other site
521010000864	Q-loop/lid; other site
521010000865	ABC transporter signature motif; other site
521010000866	Walker B; other site
521010000867	D-loop; other site
521010000868	H-loop/switch region; other site
521010000869	Smr domain; Region: Smr; pfam01713
521010000870	ribosome small subunit-dependent GTPase A; Region: TIGR00157
521010000871	Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; Region: YjeQ_EngC; cd01854
521010000872	GTPase/Zn-binding domain interface [polypeptide binding]; other site
521010000873	GTP/Mg2+ binding site [chemical binding]; other site
521010000874	G4 box; other site
521010000875	G5 box; other site
521010000876	G1 box; other site
521010000877	Switch I region; other site
521010000878	G2 box; other site
521010000879	G3 box; other site
521010000880	Switch II region; other site
521010000881	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
521010000882	asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932
521010000883	EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB...; Region: EcAsnRS_like_N; cd04318
521010000884	putative dimer interface [polypeptide binding]; other site
521010000885	putative anticodon binding site; other site
521010000886	Asx tRNA synthetase (AspRS/AsnRS) class II core domain.  Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as...; Region: AsxRS_core; cd00776
521010000887	homodimer interface [polypeptide binding]; other site
521010000888	motif 1; other site
521010000889	motif 2; other site
521010000890	active site
521010000891	motif 3; other site
521010000892	Predicted phosphoribosyltransferases [General function prediction only]; Region: COG2236
521010000893	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
521010000894	active site
521010000895	periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037
521010000896	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
521010000897	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
521010000898	protein binding site [polypeptide binding]; other site
521010000899	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
521010000900	protein binding site [polypeptide binding]; other site
521010000901	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
521010000902	active site
521010000903	putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917
521010000904	Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus...; Region: Terminator_NusB; cd00619
521010000905	putative RNA binding site [nucleotide binding]; other site
521010000906	Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]; Region: SurA; COG0760
521010000907	SurA N-terminal domain; Region: SurA_N; pfam09312
521010000908	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
521010000909	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
521010000910	acetyl-CoA acetyltransferases; Region: AcCoA-C-Actrans; TIGR01930
521010000911	dimer interface [polypeptide binding]; other site
521010000912	active site
521010000913	replicative DNA helicase; Region: DnaB; TIGR00665
521010000914	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
521010000915	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
521010000916	Walker A motif; other site
521010000917	ATP binding site [chemical binding]; other site
521010000918	Walker B motif; other site
521010000919	DNA binding loops [nucleotide binding]
521010000920	ribosomal protein L9; Region: L9; TIGR00158
521010000921	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
521010000922	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
521010000923	30S ribosomal protein S18; Reviewed; Region: rpsR; PRK00391
521010000924	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
521010000925	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
521010000926	dimer interface [polypeptide binding]; other site
521010000927	ssDNA binding site [nucleotide binding]; other site
521010000928	tetramer (dimer of dimers) interface [polypeptide binding]; other site
521010000929	Ribosomal protein S6; Region: Ribosomal_S6; cl00414
521010000930	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
521010000931	PTS system, maltose and glucose-specific IIBC component; Region: PTS-IIBC-malX; TIGR02004
521010000932	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
521010000933	active site turn [active]
521010000934	phosphorylation site [posttranslational modification]
521010000935	Predicted membrane protein, hemolysin III homolog [General function prediction only]; Region: COG1272
521010000936	channel protein, hemolysin III family; Region: hlyIII; TIGR01065
521010000937	RIP metalloprotease RseP; Region: TIGR00054
521010000938	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
521010000939	active site
521010000940	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
521010000941	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
521010000942	protein binding site [polypeptide binding]; other site
521010000943	Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic...; Region: S2P-M50; cl10020
521010000944	putative substrate binding region [chemical binding]; other site
521010000945	Cytidylyltransferase family; Region: CTP_transf_1; pfam01148
521010000946	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
521010000947	Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cl00230
521010000948	Undecaprenyl pyrophosphate synthase [Lipid metabolism]; Region: UppS; COG0020
521010000949	catalytic residue [active]
521010000950	putative FPP diphosphate  binding site; other site
521010000951	putative FPP binding hydrophobic cleft; other site
521010000952	dimer interface [polypeptide binding]; other site
521010000953	putative IPP diphosphate binding site; other site
521010000954	ribosome recycling factor; Reviewed; Region: frr; PRK00083
521010000955	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another...; Region: RRF; cd00520
521010000956	hinge region; other site
521010000957	Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been...; Region: UBA; cl00153
521010000958	Elongation factor TS; Region: EF_TS; pfam00889
521010000959	Elongation factor TS; Region: EF_TS; pfam00889
521010000960	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
521010000961	rRNA interaction site [nucleotide binding]; other site
521010000962	S8 interaction site; other site
521010000963	putative laminin-1 binding site; other site
521010000964	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
521010000965	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
521010000966	RNA binding site [nucleotide binding]; other site
521010000967	Ribosomal protein S1-like RNA-binding domain; Region: S1; smart00316
521010000968	RNA binding site [nucleotide binding]; other site
521010000969	Ribosomal protein S1-like RNA-binding domain; Region: S1; smart00316
521010000970	RNA binding site [nucleotide binding]; other site
521010000971	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cd00164
521010000972	RNA binding site [nucleotide binding]; other site
521010000973	Ribosomal protein S1-like RNA-binding domain; Region: S1; smart00316
521010000974	RNA binding site [nucleotide binding]; other site
521010000975	cytidylate kinase; Region: cmk; TIGR00017
521010000976	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
521010000977	CMP-binding site; other site
521010000978	The sites determining sugar specificity; other site
521010000979	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
521010000980	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
521010000981	RNA binding surface [nucleotide binding]; other site
521010000982	Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi); Region: PseudoU_synth; cl00130
521010000983	active site
521010000984	recombinase A; Provisional; Region: recA; PRK09354
521010000985	RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983
521010000986	hexamer interface [polypeptide binding]; other site
521010000987	Walker A motif; other site
521010000988	ATP binding site [chemical binding]; other site
521010000989	Walker B motif; other site
521010000990	transcript cleavage factor/unknown domain fusion protein; Provisional; Region: PRK14720
521010000991	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
521010000992	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
521010000993	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010000994	binding surface
521010000995	TPR motif; other site
521010000996	Tetratricopeptide repeat; Region: TPR_16; pfam13432
521010000997	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010000998	TPR motif; other site
521010000999	binding surface
521010001000	Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: HisS; COG0124
521010001001	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for...; Region: HisRS-like_core; cd00773
521010001002	dimer interface [polypeptide binding]; other site
521010001003	motif 1; other site
521010001004	active site
521010001005	motif 2; other site
521010001006	motif 3; other site
521010001007	HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859
521010001008	anticodon binding site; other site
521010001009	Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768
521010001010	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
521010001011	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
521010001012	PASTA domain of PBP2x-like proteins, second repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by...; Region: PASTA_Pbp2x-like_2; cd06575
521010001013	Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022
521010001014	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
521010001015	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
521010001016	acyl-activating enzyme (AAE) consensus motif; other site
521010001017	CoA binding site [chemical binding]; other site
521010001018	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
521010001019	AMP binding site [chemical binding]; other site
521010001020	active site
521010001021	CoA binding site [chemical binding]; other site
521010001022	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
521010001023	Protein export membrane protein; Region: SecD_SecF; cl14618
521010001024	Membrane-fusion protein [Cell envelope biogenesis, outer membrane]; Region: AcrA; COG0845
521010001025	HlyD family secretion protein; Region: HlyD_3; pfam13437
521010001026	Outer membrane efflux protein; Region: OEP; pfam02321
521010001027	ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; Region: ProX; COG2113
521010001028	Substrate binding domain of ABC-type glycine betaine transport system; Region: OpuAC; pfam04069
521010001029	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010001030	dimer interface [polypeptide binding]; other site
521010001031	conserved gate region; other site
521010001032	putative PBP binding loops; other site
521010001033	ABC-ATPase subunit interface; other site
521010001034	ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]; Region: ProV; COG4175
521010001035	ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; Region: ABC_Pro_Gly_Betaine; cd03294
521010001036	Walker A/P-loop; other site
521010001037	ATP binding site [chemical binding]; other site
521010001038	Q-loop/lid; other site
521010001039	ABC transporter signature motif; other site
521010001040	Walker B; other site
521010001041	D-loop; other site
521010001042	H-loop/switch region; other site
521010001043	flagellin; Provisional; Region: PRK12803
521010001044	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
521010001045	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
521010001046	flagellar hook-associated protein FliD; Validated; Region: fliD; PRK06664
521010001047	Flagellar hook-associated protein 2 C-terminus; Region: FliD_N; pfam02465
521010001048	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
521010001049	N-acetylglucosamine-6-phosphate deacetylase; Region: nagA; TIGR00221
521010001050	N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to...; Region: NagA; cd00854
521010001051	active site
521010001052	dimer interface [polypeptide binding]; other site
521010001053	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; Region: NagB; COG0363
521010001054	GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or...; Region: GlcN6P_deaminase; cd01399
521010001055	active site
521010001056	trimer interface [polypeptide binding]; other site
521010001057	allosteric site; other site
521010001058	active site lid [active]
521010001059	hexamer (dimer of trimers) interface [polypeptide binding]; other site
521010001060	Superoxide dismutase [Inorganic ion transport and metabolism]; Region: SodA; COG0605
521010001061	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
521010001062	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
521010001063	preprotein translocase subunit SecA; Reviewed; Region: PRK12904
521010001064	SecA preprotein cross-linking domain; Region: SecA_PP_bind; smart00958
521010001065	SEC-C motif; Region: SEC-C; pfam02810
521010001066	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase; Region: PLPDE_III_AR; cd00430
521010001067	alanine racemase; Region: alr; TIGR00492
521010001068	active site
521010001069	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
521010001070	dimer interface [polypeptide binding]; other site
521010001071	substrate binding site [chemical binding]; other site
521010001072	catalytic residues [active]
521010001073	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
521010001074	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
521010001075	Uncharacterized conserved protein [Function unknown]; Region: COG1306
521010001076	4-alpha-glucanotransferase; Region: Glyco_hydro_77; cl00711
521010001077	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
521010001078	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
521010001079	ligand binding site [chemical binding]; other site
521010001080	DnaK suppressor protein [Signal transduction mechanisms]; Region: DksA; COG1734
521010001081	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
521010001082	rRNA binding site [nucleotide binding]; other site
521010001083	predicted 30S ribosome binding site; other site
521010001084	Oxygen tolerance; Region: BatD; pfam13584
521010001085	TPR repeat; Region: TPR_11; pfam13414
521010001086	Bacterial SH3 domain homologues; Region: SH3b; smart00287
521010001087	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001088	binding surface
521010001089	TPR motif; other site
521010001090	TPR repeat; Region: TPR_11; pfam13414
521010001091	von Willebrand factor type A domain; Region: VWA_2; pfam13519
521010001092	metal ion-dependent adhesion site (MIDAS); other site
521010001093	Aerotolerance regulator N-terminal; Region: BatA; cl06567
521010001094	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]; Region: COG2304
521010001095	VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: vWA_BatA_type; cd01467
521010001096	metal ion-dependent adhesion site (MIDAS); other site
521010001097	Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]; Region: COG1721
521010001098	Protein of unknown function DUF58; Region: DUF58; pfam01882
521010001099	von Willebrand factor (vWF) type A domain; Region: VWA; smart00327
521010001100	MoxR-like ATPases [General function prediction only]; Region: COG0714
521010001101	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010001102	Walker A motif; other site
521010001103	ATP binding site [chemical binding]; other site
521010001104	Walker B motif; other site
521010001105	arginine finger; other site
521010001106	rRNA small subunit methyltransferase G; Region: GidB; pfam02527
521010001107	16S rRNA methyltransferase GidB; Reviewed; Region: gidB; cl17726
521010001108	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
521010001109	Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; cl17730
521010001110	tRNA (uracil-5-)-methyltransferase Gid; Reviewed; Region: PRK05335
521010001111	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932
521010001112	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
521010001113	tRNA modification GTPase TrmE; Region: mnmE_trmE_thdF; TIGR00450
521010001114	trmE is a tRNA modification GTPase; Region: trmE; cd04164
521010001115	G1 box; other site
521010001116	GTP/Mg2+ binding site [chemical binding]; other site
521010001117	Switch I region; other site
521010001118	G2 box; other site
521010001119	Switch II region; other site
521010001120	G3 box; other site
521010001121	G4 box; other site
521010001122	G5 box; other site
521010001123	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
521010001124	flagellar hook-associated protein FlgK; Validated; Region: flgK; PRK06665
521010001125	Flagellin hook IN motif; Region: Flagellin_IN; pfam07196
521010001126	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
521010001127	flagellar hook-associated protein FlgL; Validated; Region: PRK06663
521010001128	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
521010001129	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
521010001130	flagellar assembly protein FliW; Provisional; Region: PRK13285
521010001131	carbon storage regulator (csrA); Region: csrA; TIGR00202
521010001132	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214
521010001133	Glycoprotease family; Region: Peptidase_M22; pfam00814
521010001134	tRNA threonylcarbamoyl adenosine modification protein YjeE; Region: T6A_YjeE; TIGR00150
521010001135	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
521010001136	23S rRNA binding site [nucleotide binding]; other site
521010001137	L21 binding site [polypeptide binding]; other site
521010001138	L13 binding site [polypeptide binding]; other site
521010001139	50S ribosomal protein L35; Reviewed; Region: rpmI; PRK00172
521010001140	translation initiation factor IF-3; Reviewed; Region: infC; PRK00028
521010001141	Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198
521010001142	Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707
521010001143	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
521010001144	active site
521010001145	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001146	binding surface
521010001147	TPR motif; other site
521010001148	TPR repeat; Region: TPR_11; pfam13414
521010001149	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001150	binding surface
521010001151	TPR repeat; Region: TPR_11; pfam13414
521010001152	TPR motif; other site
521010001153	Tetratricopeptide repeat; Region: TPR_12; pfam13424
521010001154	TPR repeat; Region: TPR_11; pfam13414
521010001155	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001156	binding surface
521010001157	TPR motif; other site
521010001158	TPR repeat; Region: TPR_11; pfam13414
521010001159	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001160	binding surface
521010001161	TPR motif; other site
521010001162	Tetratricopeptide repeat; Region: TPR_16; pfam13432
521010001163	peptide chain release factor 1; Validated; Region: prfA; PRK00591
521010001164	This domain is found in peptide chain release factors; Region: PCRF; smart00937
521010001165	RF-1 domain; Region: RF-1; pfam00472
521010001166	protein-(glutamine-N5) methyltransferase, release factor-specific; Region: RF_mod_PrmC; TIGR03534
521010001167	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
521010001168	S-adenosylmethionine binding site [chemical binding]; other site
521010001169	(p)ppGpp synthetase, RelA/SpoT family; Region: spoT_relA; TIGR00691
521010001170	HD domain; Region: HD_4; pfam13328
521010001171	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
521010001172	synthetase active site [active]
521010001173	NTP binding site [chemical binding]; other site
521010001174	metal binding site [ion binding]; metal-binding site
521010001175	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
521010001176	D-alanyl-alanine synthetase A; Provisional; Region: PRK14570
521010001177	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
521010001178	D-ala D-ala ligase C-terminus; Region: Dala_Dala_lig_C; pfam07478
521010001179	UDP-N-acetylmuramyl-tripeptide synthetase; Region: murE; TIGR01085
521010001180	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
521010001181	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
521010001182	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
521010001183	Domain of unknown function DUF21; Region: DUF21; pfam01595
521010001184	FOG: CBS domain [General function prediction only]; Region: COG0517
521010001185	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
521010001186	Transporter associated domain; Region: CorC_HlyC; pfam03471
521010001187	HflK protein; Region: hflK; TIGR01933
521010001188	Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflK; cd03404
521010001189	HflC protein; Region: hflC; TIGR01932
521010001190	Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflC; cd03405
521010001191	c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]; Region: COG2206
521010001192	Conserved hypothetical protein 95; Region: Cons_hypoth95; pfam03602
521010001193	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
521010001194	S-adenosylmethionine binding site [chemical binding]; other site
521010001195	UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]; Region: GalU; COG1210
521010001196	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure...; Region: GCD1; COG1208
521010001197	active site
521010001198	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001199	binding surface
521010001200	TPR motif; other site
521010001201	Tetratricopeptide repeat; Region: TPR_16; pfam13432
521010001202	TPR repeat; Region: TPR_11; pfam13414
521010001203	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001204	binding surface
521010001205	TPR repeat; Region: TPR_11; pfam13414
521010001206	TPR motif; other site
521010001207	TPR repeat; Region: TPR_11; pfam13414
521010001208	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001209	binding surface
521010001210	Tetratricopeptide repeat; Region: TPR_16; pfam13432
521010001211	TPR motif; other site
521010001212	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001213	TPR motif; other site
521010001214	Tetratricopeptide repeat; Region: TPR_16; pfam13432
521010001215	binding surface
521010001216	DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]; Region: MutL; COG0323
521010001217	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
521010001218	Mg2+ binding site [ion binding]; other site
521010001219	G-X-G motif; other site
521010001220	MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is...; Region: MutL_Trans; cd00782
521010001221	ATP binding site [chemical binding]; other site
521010001222	MutL C terminal dimerisation domain; Region: MutL_C; pfam08676
521010001223	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
521010001224	translation elongation factor P; Region: efp; TIGR00038
521010001225	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
521010001226	RNA binding site [nucleotide binding]; other site
521010001227	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
521010001228	RNA binding site [nucleotide binding]; other site
521010001229	ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: PstS; COG0226
521010001230	phosphate ABC transporter, permease protein PstC; Region: phosphate_pstC; TIGR02138
521010001231	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010001232	dimer interface [polypeptide binding]; other site
521010001233	conserved gate region; other site
521010001234	putative PBP binding loops; other site
521010001235	ABC-ATPase subunit interface; other site
521010001236	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
521010001237	ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]; Region: PstA; COG0581
521010001238	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010001239	dimer interface [polypeptide binding]; other site
521010001240	conserved gate region; other site
521010001241	putative PBP binding loops; other site
521010001242	ABC-ATPase subunit interface; other site
521010001243	ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: PstB; COG1117
521010001244	ATP-binding cassette domain of the phosphate transport system; Region: ABC_PstB_phosphate_transporter; cd03260
521010001245	Walker A/P-loop; other site
521010001246	ATP binding site [chemical binding]; other site
521010001247	Q-loop/lid; other site
521010001248	ABC transporter signature motif; other site
521010001249	Walker B; other site
521010001250	D-loop; other site
521010001251	H-loop/switch region; other site
521010001252	Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]; Region: COG0428
521010001253	ZIP Zinc transporter; Region: Zip; pfam02535
521010001254	alanyl-tRNA synthetase; Provisional; Region: PRK01584
521010001255	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: AlaRS_core; cd00673
521010001256	motif 1; other site
521010001257	active site
521010001258	motif 2; other site
521010001259	motif 3; other site
521010001260	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
521010001261	Flagellar motor switch protein [Cell motility and secretion]; Region: FliG; COG1536
521010001262	Deoxyhypusine synthase; Region: DS; cl00826
521010001263	FliG C-terminal domain; Region: FliG_C; pfam01706
521010001264	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; Region: NagB; COG0363
521010001265	6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard...; Region: 6PGL; cd01400
521010001266	putative active site [active]
521010001267	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
521010001268	active site
521010001269	FMN binding site [chemical binding]; other site
521010001270	catalytic residues [active]
521010001271	substrate binding site [chemical binding]; other site
521010001272	seryl-tRNA synthetase; Region: serS; TIGR00414
521010001273	Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403
521010001274	Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770
521010001275	dimer interface [polypeptide binding]; other site
521010001276	active site
521010001277	motif 1; other site
521010001278	motif 2; other site
521010001279	motif 3; other site
521010001280	Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]; Region: COG1026
521010001281	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
521010001282	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
521010001283	Peptidase M16C associated; Region: M16C_assoc; pfam08367
521010001284	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
521010001285	50S ribosomal protein L31 type B; Reviewed; Region: rpmE2; PRK01678
521010001286	transcription termination factor Rho; Region: rho; TIGR00767
521010001287	Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA...; Region: Rho_CSD; cd04459
521010001288	RNA binding site [nucleotide binding]; other site
521010001289	Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the...; Region: rho_factor; cd01128
521010001290	multimer interface [polypeptide binding]; other site
521010001291	Walker A motif; other site
521010001292	ATP binding site [chemical binding]; other site
521010001293	Walker B motif; other site
521010001294	Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]; Region: CcmA; COG1664
521010001295	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
521010001296	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
521010001297	IHF dimer interface [polypeptide binding]; other site
521010001298	IHF - DNA interface [nucleotide binding]; other site
521010001299	30S ribosomal protein S20; Reviewed; Region: rpsT; PRK00239
521010001300	GTP-binding protein YchF; Reviewed; Region: PRK09601
521010001301	YchF GTPase; Region: YchF; cd01900
521010001302	G1 box; other site
521010001303	GTP/Mg2+ binding site [chemical binding]; other site
521010001304	Switch I region; other site
521010001305	G2 box; other site
521010001306	Switch II region; other site
521010001307	G3 box; other site
521010001308	G4 box; other site
521010001309	G5 box; other site
521010001310	TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867
521010001311	TPR repeat; Region: TPR_11; pfam13414
521010001312	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001313	TPR motif; other site
521010001314	binding surface
521010001315	Uncharacterized conserved protein [Function unknown]; Region: COG3391
521010001316	VWFA-related Acidobacterial domain; Region: acidobact_VWFA; TIGR03436
521010001317	von Willebrand factor type A domain; Region: VWA_2; pfam13519
521010001318	apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302
521010001319	Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571
521010001320	putative active site [active]
521010001321	catalytic triad [active]
521010001322	putative dimer interface [polypeptide binding]; other site
521010001323	Deoxynucleoside kinases [Nucleotide transport and metabolism]; Region: COG1428
521010001324	Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1; Region: dNK; cd01673
521010001325	Substrate-binding site [chemical binding]; other site
521010001326	Substrate specificity [chemical binding]; other site
521010001327	Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal...; Region: MIP; cd00333
521010001328	amphipathic channel; other site
521010001329	Asn-Pro-Ala signature motifs; other site
521010001330	glycerol kinase; Provisional; Region: glpK; PRK00047
521010001331	Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_EcGK_like; cd07786
521010001332	N- and C-terminal domain interface [polypeptide binding]; other site
521010001333	active site
521010001334	MgATP binding site [chemical binding]; other site
521010001335	catalytic site [active]
521010001336	metal binding site [ion binding]; metal-binding site
521010001337	glycerol binding site [chemical binding]; other site
521010001338	homotetramer interface [polypeptide binding]; other site
521010001339	homodimer interface [polypeptide binding]; other site
521010001340	FBP binding site [chemical binding]; other site
521010001341	protein IIAGlc interface [polypeptide binding]; other site
521010001342	Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Region: GlpA; COG0578
521010001343	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1728
521010001344	Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]; Region: CcmA; COG1664
521010001345	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
521010001346	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
521010001347	Peptidase family M23; Region: Peptidase_M23; pfam01551
521010001348	NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A...; Region: HAM1; cd00515
521010001349	active site
521010001350	dimerization interface [polypeptide binding]; other site
521010001351	oligoendopeptidase F; Region: pepF; TIGR00181
521010001352	Peptidase family M3B Oligopeptidase F (PepF); Region: M3B_PepF_3; cd09608
521010001353	active site
521010001354	Zn binding site [ion binding]; other site
521010001355	Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183
521010001356	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; pfam01066
521010001357	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
521010001358	leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390
521010001359	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
521010001360	HIGH motif; other site
521010001361	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
521010001362	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
521010001363	active site
521010001364	KMSKS motif; other site
521010001365	Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958
521010001366	tRNA binding surface [nucleotide binding]; other site
521010001367	Predicted exporters of the RND superfamily [General function prediction only]; Region: COG1033
521010001368	Found in ATP-dependent protease La (LON); Region: LON; smart00464
521010001369	ATP-dependent protease La; Region: lon; TIGR00763
521010001370	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010001371	Walker A motif; other site
521010001372	ATP binding site [chemical binding]; other site
521010001373	Walker B motif; other site
521010001374	arginine finger; other site
521010001375	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
521010001376	DHH family; Region: DHH; pfam01368
521010001377	single-stranded-DNA-specific exonuclease RecJ; Region: recJ; TIGR00644
521010001378	DHHA1 domain; Region: DHHA1; pfam02272
521010001379	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
521010001380	Peptidase family M23; Region: Peptidase_M23; pfam01551
521010001381	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
521010001382	DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; Region: FtsK; COG1674
521010001383	FtsK/SpoIIIE family; Region: FtsK_SpoIIIE; pfam01580
521010001384	This domain directs oriented DNA translocation and forms a winged helix structure; Region: Ftsk_gamma; smart00843
521010001385	Bacitracin resistance protein BacA; Region: BacA; cl00858
521010001386	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
521010001387	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
521010001388	N-acetyl-D-glucosamine binding site [chemical binding]; other site
521010001389	catalytic residue [active]
521010001390	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001391	TPR motif; other site
521010001392	binding surface
521010001393	Anaphase-promoting complex, cyclosome, subunit 3; Region: Apc3; pfam12895
521010001394	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
521010001395	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
521010001396	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
521010001397	Peptidase family M23; Region: Peptidase_M23; pfam01551
521010001398	signal peptidase I, bacterial type; Region: sigpep_I_bact; TIGR02227
521010001399	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
521010001400	Nucleotide-binding domain of the HSP70 family; Region: HSP70_NBD; cd10170
521010001401	cell shape determining protein, MreB/Mrl family; Region: mreB; TIGR00904
521010001402	nucleotide binding site [chemical binding]; other site
521010001403	putative NEF/HSP70 interaction site [polypeptide binding]; other site
521010001404	SBD interface [polypeptide binding]; other site
521010001405	Uncharacterized conserved protein [Function unknown]; Region: COG1315
521010001406	Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]; Region: flhG; COG0455
521010001407	FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by...; Region: FleN-like; cd02038
521010001408	P-loop; other site
521010001409	flagellar biosynthesis regulator FlhF; Provisional; Region: PRK12723
521010001410	Protein of unknown function, DUF258; Region: DUF258; pfam03193
521010001411	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
521010001412	flagellar biosynthesis protein FlhA; Validated; Region: flhA; PRK06012
521010001413	FHIPEP family; Region: FHIPEP; pfam00771
521010001414	flagellar biosynthetic protein FlhB; Region: flhB; TIGR00328
521010001415	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257
521010001416	Bacterial export proteins, family 1; Region: Bac_export_1; cl00734
521010001417	flagellar biosynthesis protein FliQ; Validated; Region: fliQ; PRK05700
521010001418	flagellar biosynthesis protein FliP; Reviewed; Region: fliP; PRK05699
521010001419	flagellar biosynthesis protein FliZ; Provisional; Region: PRK13414
521010001420	Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliN; COG1886
521010001421	Flagellar motor switch protein [Cell motility and secretion]; Region: FliM; COG1868
521010001422	Surface presentation of antigens (SPOA); Region: SpoA; pfam01052
521010001423	flagellar basal body-associated protein FliL; Reviewed; Region: fliL; PRK06654
521010001424	flagellar motor protein MotB; Validated; Region: motB; PRK06667
521010001425	Membrane MotB of proton-channel complex MotA/MotB; Region: MotB_plug; pfam13677
521010001426	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
521010001427	ligand binding site [chemical binding]; other site
521010001428	Flagellar motor component [Cell motility and secretion]; Region: MotA; COG1291
521010001429	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
521010001430	Uncharacterized protein, possibly involved in motility [Cell motility and secretion]; Region: FlgEa; COG1582
521010001431	flagellar hook protein FlgE; Validated; Region: flgE; PRK05682
521010001432	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
521010001433	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
521010001434	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
521010001435	flagellar basal body rod modification protein; Provisional; Region: flgD; PRK09618
521010001436	Flagellar hook capping protein - N-terminal region; Region: FlgD; pfam03963
521010001437	Flagellar hook-length control protein FliK; Region: Flg_hook; pfam02120
521010001438	ATPase FliI/YscN family; Region: fliI_yscN; TIGR01026
521010001439	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
521010001440	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
521010001441	Walker A motif; other site
521010001442	ATP binding site [chemical binding]; other site
521010001443	Walker B motif; other site
521010001444	flagellar assembly protein H; Validated; Region: fliH; PRK06669
521010001445	The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin.  Many of these band 7 domain-containing proteins are lipid raft-associated.  Individual proteins of this...; Region: Band_7; cl02525
521010001446	Flagellar assembly protein FliH; Region: FliH; pfam02108
521010001447	flagellar motor switch protein FliG; Region: fliG; TIGR00207
521010001448	FliG C-terminal domain; Region: FliG_C; pfam01706
521010001449	flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF); Region: fliF; TIGR00206
521010001450	Secretory protein of YscJ/FliF family; Region: YscJ_FliF; cl01907
521010001451	Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345
521010001452	flagellar hook-basal body protein FliE; Reviewed; Region: fliE; PRK01482
521010001453	flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK05681
521010001454	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
521010001455	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
521010001456	flagellar basal body rod protein FlgB; Provisional; Region: flgB; PRK12622
521010001457	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
521010001458	ATP-dependent protease ATP-binding subunit HslU; Provisional; Region: hslU; PRK05201
521010001459	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010001460	Walker A motif; other site
521010001461	ATP binding site [chemical binding]; other site
521010001462	AAA domain (Cdc48 subfamily); Region: AAA_2; pfam07724
521010001463	Walker B motif; other site
521010001464	arginine finger; other site
521010001465	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
521010001466	Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the...; Region: protease_HslV; cd01913
521010001467	active site
521010001468	HslU subunit interaction site [polypeptide binding]; other site
521010001469	Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]; Region: Smf; COG0758
521010001470	DNA protecting protein DprA; Region: dprA; TIGR00732
521010001471	TPR repeat; Region: TPR_11; pfam13414
521010001472	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001473	binding surface
521010001474	TPR motif; other site
521010001475	cell division protein FtsZ; Validated; Region: PRK09330
521010001476	FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at...; Region: FtsZ_type1; cd02201
521010001477	nucleotide binding site [chemical binding]; other site
521010001478	SulA interaction site; other site
521010001479	cell division protein FtsA; Region: ftsA; TIGR01174
521010001480	Cell division protein FtsA; Region: FtsA; smart00842
521010001481	Cell division protein FtsA; Region: FtsA; pfam14450
521010001482	Cell division septal protein [Cell envelope biogenesis, outer membrane]; Region: FtsQ; COG1589
521010001483	POTRA domain, FtsQ-type; Region: POTRA_1; pfam08478
521010001484	Cell cycle protein; Region: FTSW_RODA_SPOVE; pfam01098
521010001485	phospho-N-acetylmuramoyl-pentapeptide-transferase; Region: mraY; TIGR00445
521010001486	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
521010001487	Mg++ binding site [ion binding]; other site
521010001488	putative catalytic motif [active]
521010001489	putative substrate binding site [chemical binding]; other site
521010001490	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
521010001491	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Region: murF; TIGR01143
521010001492	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
521010001493	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
521010001494	Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]; Region: COG0275
521010001495	MraW methylase family; Region: Methyltransf_5; pfam01795
521010001496	NAD kinase [Coenzyme metabolism]; Region: nadF; COG0061
521010001497	ATP-NAD kinase; Region: NAD_kinase; pfam01513
521010001498	CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732
521010001499	putative CheA interaction surface; other site
521010001500	23S rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: FtsJ; COG0293
521010001501	FtsJ-like methyltransferase; Region: FtsJ; pfam01728
521010001502	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
521010001503	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
521010001504	substrate binding pocket [chemical binding]; other site
521010001505	chain length determination region; other site
521010001506	substrate-Mg2+ binding site; other site
521010001507	catalytic residues [active]
521010001508	aspartate-rich region 1; other site
521010001509	active site lid residues [active]
521010001510	aspartate-rich region 2; other site
521010001511	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
521010001512	binding surface
521010001513	TPR repeat; Region: TPR_11; pfam13414
521010001514	TPR motif; other site
521010001515	Uncharacterized ABC-type transport system, permease component [General function prediction only]; Region: COG1079
521010001516	Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette; Region: TM_PBP1_transp_TpRbsC_like; cd06580
521010001517	TM-ABC transporter signature motif; other site
521010001518	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
521010001519	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
521010001520	Walker A/P-loop; other site
521010001521	ATP binding site [chemical binding]; other site
521010001522	Q-loop/lid; other site
521010001523	ABC transporter signature motif; other site
521010001524	Walker B; other site
521010001525	D-loop; other site
521010001526	H-loop/switch region; other site
521010001527	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010001528	ABC transporter signature motif; other site
521010001529	Walker B; other site
521010001530	D-loop; other site
521010001531	H-loop/switch region; other site
521010001532	Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]; Region: Med; COG1744
521010001533	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
521010001534	Uncharacterized protein containing LysM domain [Function unknown]; Region: XkdP; COG1652
521010001535	Tetratricopeptide repeat; Region: TPR_16; pfam13432
521010001536	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
521010001537	metal ion-dependent adhesion site (MIDAS); other site
521010001538	Tetratricopeptide repeat; Region: TPR_12; pfam13424
521010001539	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001540	binding surface
521010001541	TPR motif; other site
521010001542	Phosphate acyltransferases; Region: PlsC; smart00563
521010001543	putative acyl-acceptor binding pocket; other site
521010001544	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
521010001545	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
521010001546	peptide binding site [polypeptide binding]; other site
521010001547	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
521010001548	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
521010001549	peptide binding site [polypeptide binding]; other site
521010001550	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
521010001551	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
521010001552	peptide binding site [polypeptide binding]; other site
521010001553	oligopeptide transporter permease; Reviewed; Region: oppB; PRK09471
521010001554	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010001555	dimer interface [polypeptide binding]; other site
521010001556	conserved gate region; other site
521010001557	putative PBP binding loops; other site
521010001558	ABC-ATPase subunit interface; other site
521010001559	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
521010001560	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
521010001561	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010001562	dimer interface [polypeptide binding]; other site
521010001563	conserved gate region; other site
521010001564	putative PBP binding loops; other site
521010001565	ABC-ATPase subunit interface; other site
521010001566	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
521010001567	nickel import ATP-binding protein NikD; Region: nickel_nikD; TIGR02770
521010001568	Walker A/P-loop; other site
521010001569	ATP binding site [chemical binding]; other site
521010001570	Q-loop/lid; other site
521010001571	ABC transporter signature motif; other site
521010001572	Walker B; other site
521010001573	D-loop; other site
521010001574	H-loop/switch region; other site
521010001575	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
521010001576	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
521010001577	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
521010001578	Walker A/P-loop; other site
521010001579	ATP binding site [chemical binding]; other site
521010001580	Q-loop/lid; other site
521010001581	ABC transporter signature motif; other site
521010001582	Walker B; other site
521010001583	D-loop; other site
521010001584	H-loop/switch region; other site
521010001585	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; pfam08352
521010001586	Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus; Region: E_set; cl09101
521010001587	Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus; Region: E_set; cl09101
521010001588	enolase; Provisional; Region: eno; PRK00077
521010001589	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
521010001590	dimer interface [polypeptide binding]; other site
521010001591	metal binding site [ion binding]; metal-binding site
521010001592	substrate binding pocket [chemical binding]; other site
521010001593	30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132
521010001594	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
521010001595	23S rRNA interface [nucleotide binding]; other site
521010001596	L3 interface [polypeptide binding]; other site
521010001597	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
521010001598	aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated; Region: gatB; PRK05477
521010001599	GatB/GatE catalytic domain; Region: GatB_N; pfam02934
521010001600	GatB domain; Region: GatB_Yqey; pfam02637
521010001601	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154
521010001602	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; Region: gatA; TIGR00132
521010001603	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Region: gatC; TIGR00135
521010001604	Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]; Region: UvrD; COG0210
521010001605	Part of AAA domain; Region: AAA_19; pfam13245
521010001606	Family description; Region: UvrD_C_2; pfam13538
521010001607	Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]; Region: COG1426
521010001608	Helix-turn-helix domain; Region: HTH_25; pfam13413
521010001609	Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]; Region: LolA; COG2834
521010001610	Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl17548
521010001611	Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]; Region: COG1293
521010001612	Domain of unknown function (DUF814); Region: DUF814; pfam05670
521010001613	pyruvate kinase; Region: pyruv_kin; TIGR01064
521010001614	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl17342
521010001615	domain interfaces; other site
521010001616	active site
521010001617	50S ribosomal protein L28; Reviewed; Region: rpmB; PRK00359
521010001618	CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cl02915
521010001619	Transcriptional regulators, similar to M. xanthus CarD [Transcription]; Region: COG1329
521010001620	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1385
521010001621	RNA methyltransferase, RsmE family; Region: TIGR00046
521010001622	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
521010001623	C-terminal peptidase (prc); Region: prc; TIGR00225
521010001624	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
521010001625	protein binding site [polypeptide binding]; other site
521010001626	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
521010001627	Catalytic dyad [active]
521010001628	FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by...; Region: FleN-like; cd02038
521010001629	CobQ/CobB/MinD/ParA nucleotide binding domain; Region: CbiA; pfam01656
521010001630	P-loop; other site
521010001631	FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by...; Region: FleN-like; cd02038
521010001632	prolipoprotein diacylglyceryl transferase; Region: lgt; TIGR00544
521010001633	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
521010001634	Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to...; Region: MGS; cd01422
521010001635	active site
521010001636	dimer interfaces [polypeptide binding]; other site
521010001637	catalytic residues [active]
521010001638	M18 Peptidase Aminopeptidase I; Region: M18_API; cd05659
521010001639	Aminopeptidase I zinc metalloprotease (M18); Region: Peptidase_M18; pfam02127
521010001640	oligomer interface [polypeptide binding]; other site
521010001641	putative active site [active]
521010001642	metal binding site [ion binding]; metal-binding site
521010001643	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cl00164
521010001644	active site turn [active]
521010001645	phosphorylation site [posttranslational modification]
521010001646	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094
521010001647	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
521010001648	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479
521010001649	ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]; Region: clpA; COG0542
521010001650	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010001651	Walker A motif; other site
521010001652	ATP binding site [chemical binding]; other site
521010001653	Walker B motif; other site
521010001654	arginine finger; other site
521010001655	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
521010001656	tyrosyl-tRNA synthetase; Validated; Region: PRK05912
521010001657	catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805
521010001658	active site
521010001659	HIGH motif; other site
521010001660	dimer interface [polypeptide binding]; other site
521010001661	KMSKS motif; other site
521010001662	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
521010001663	RNA binding surface [nucleotide binding]; other site
521010001664	glycyl-tRNA synthetase; Provisional; Region: PRK04173
521010001665	Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3...; Region: GlyRS-like_core; cd00774
521010001666	dimer interface [polypeptide binding]; other site
521010001667	motif 1; other site
521010001668	active site
521010001669	motif 2; other site
521010001670	motif 3; other site
521010001671	GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: GlyRS_anticodon; cd00858
521010001672	anticodon binding site; other site
521010001673	glutamyl-tRNA synthetase, bacterial family; Region: gltX_bact; TIGR00464
521010001674	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
521010001675	active site
521010001676	HIGH motif; other site
521010001677	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
521010001678	active site
521010001679	KMSKS motif; other site
521010001680	c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]; Region: COG2206
521010001681	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
521010001682	Zn2+ binding site [ion binding]; other site
521010001683	Mg2+ binding site [ion binding]; other site
521010001684	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated; Region: PRK05584
521010001685	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Region: MTA/SAH-Nsdase; TIGR01704
521010001686	S-adenosylmethionine synthetase; Region: metK; TIGR01034
521010001687	S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438
521010001688	S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772
521010001689	S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773
521010001690	S-Ribosylhomocysteinase (LuxS); Region: LuxS; cl00802
521010001691	HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life; Region: HINT_subgroup; cd01277
521010001692	HIT family signature motif; other site
521010001693	catalytic residue [active]
521010001694	Mg2+ transporter (mgtE); Region: mgtE; TIGR00400
521010001695	MgtE intracellular N domain; Region: MgtE_N; pfam03448
521010001696	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE.  MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606
521010001697	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cd02205
521010001698	Divalent cation transporter; Region: MgtE; pfam01769
521010001699	Neutral trehalase [Carbohydrate transport and metabolism]; Region: TreA; COG1626
521010001700	Trehalase; Region: Trehalase; cl17346
521010001701	Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]; Region: Med; COG1744
521010001702	Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea; Region: PBP1_BmpA_PnrA_like; cd06354
521010001703	ligand binding site [chemical binding]; other site
521010001704	Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]; Region: Med; COG1744
521010001705	Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea; Region: PBP1_BmpA_PnrA_like; cd06354
521010001706	ligand binding site [chemical binding]; other site
521010001707	Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]; Region: Med; COG1744
521010001708	Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea; Region: PBP1_BmpA_PnrA_like; cd06354
521010001709	ligand binding site [chemical binding]; other site
521010001710	30S ribosomal protein S7; Validated; Region: PRK05302
521010001711	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
521010001712	S17 interaction site [polypeptide binding]; other site
521010001713	S8 interaction site; other site
521010001714	16S rRNA interaction site [nucleotide binding]; other site
521010001715	streptomycin interaction site [chemical binding]; other site
521010001716	23S rRNA interaction site [nucleotide binding]; other site
521010001717	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
521010001718	DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086
521010001719	RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997
521010001720	RNA polymerase I subunit A N-terminus; Region: RPOLA_N; smart00663
521010001721	RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983
521010001722	RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000
521010001723	RNA polymerase Rpb1, domain 5; Region: RNA_pol_Rpb1_5; pfam04998
521010001724	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
521010001725	Rpb1 - Rpb6 interaction site [polypeptide binding]; other site
521010001726	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
521010001727	Rpb1 - Rpb5 interaction site [polypeptide binding]; other site
521010001728	Apocytochrome F, C-terminal; Region: Apocytochr_F_C; cl03168
521010001729	Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655
521010001730	DNA binding site [nucleotide binding]
521010001731	Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site
521010001732	DNA-directed RNA polymerase subunit beta; Reviewed; Region: rpoB; PRK00405
521010001733	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl17585
521010001734	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
521010001735	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
521010001736	RPB10 interaction site [polypeptide binding]; other site
521010001737	RPB1 interaction site [polypeptide binding]; other site
521010001738	RPB11 interaction site [polypeptide binding]; other site
521010001739	RPB3 interaction site [polypeptide binding]; other site
521010001740	RPB12 interaction site [polypeptide binding]; other site
521010001741	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
521010001742	core dimer interface [polypeptide binding]; other site
521010001743	peripheral dimer interface [polypeptide binding]; other site
521010001744	L10 interface [polypeptide binding]; other site
521010001745	L11 interface [polypeptide binding]; other site
521010001746	putative EF-Tu interaction site [polypeptide binding]; other site
521010001747	putative EF-G interaction site [polypeptide binding]; other site
521010001748	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
521010001749	23S rRNA interface [nucleotide binding]; other site
521010001750	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
521010001751	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
521010001752	mRNA/rRNA interface [nucleotide binding]; other site
521010001753	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
521010001754	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
521010001755	23S rRNA interface [nucleotide binding]; other site
521010001756	L7/L12 interface [polypeptide binding]; other site
521010001757	putative thiostrepton binding site; other site
521010001758	L25 interface [polypeptide binding]; other site
521010001759	transcription termination/antitermination factor NusG; Region: nusG; TIGR00922
521010001760	Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891
521010001761	putative homodimer interface [polypeptide binding]; other site
521010001762	NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus; Region: KOW_NusG; cd06091
521010001763	heterodimer interface [polypeptide binding]; other site
521010001764	homodimer interface [polypeptide binding]; other site
521010001765	50S ribosomal protein L33; Validated; Region: rpmG; PRK00595
521010001766	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
521010001767	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
521010001768	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
521010001769	Sodium:dicarboxylate symporter family; Region: SDF; cl00573
521010001770	prolyl-tRNA synthetase; Provisional; Region: PRK08661
521010001771	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ProRS_core_arch_euk; cd00778
521010001772	dimer interface [polypeptide binding]; other site
521010001773	motif 1; other site
521010001774	active site
521010001775	motif 2; other site
521010001776	motif 3; other site
521010001777	ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in...; Region: ProRS_anticodon_zinc; cd00862
521010001778	anticodon binding site; other site
521010001779	zinc-binding site [ion binding]; other site
521010001780	Predicted secreted protein [Function unknown]; Region: COG5497
521010001781	Protein of unknown function (DUF3996); Region: DUF3996; pfam13161
521010001782	Protein of unknown function (DUF3996); Region: DUF3996; pfam13161
521010001783	mannose-6-phosphate isomerase, class I; Region: manA; TIGR00218
521010001784	Phosphomannose isomerase [Carbohydrate transport and metabolism]; Region: ManA; COG1482
521010001785	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
521010001786	PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional; Region: PRK09765
521010001787	active site
521010001788	phosphorylation site [posttranslational modification]
521010001789	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
521010001790	active site
521010001791	P-loop; other site
521010001792	phosphorylation site [posttranslational modification]
521010001793	Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]; Region: FruA; COG1299
521010001794	DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases.  They exists as monomers and homodimers; Region: NUC; cd00091
521010001795	DNA/RNA non-specific endonuclease; Region: Endonuclease_NS; smart00892
521010001796	active site
521010001797	substrate binding site [chemical binding]; other site
521010001798	Mg2+ binding site [ion binding]; other site
521010001799	Dolichol kinase [Lipid metabolism]; Region: SEC59; COG0170
521010001800	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
521010001801	Methyltransferase, chemotaxis proteins; Region: MeTrc; smart00138
521010001802	CheR methyltransferase, SAM binding domain; Region: CheR; pfam01739
521010001803	Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]; Region: CheB; COG2201
521010001804	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cl17736
521010001805	active site
521010001806	phosphorylation site [posttranslational modification]
521010001807	intermolecular recognition site; other site
521010001808	CheB methylesterase; Region: CheB_methylest; pfam01339
521010001809	pheromone shutdown-related protein TraB; Region: traB; TIGR00261
521010001810	adenylate kinase; Provisional; Region: PRK14526
521010001811	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
521010001812	AMP-binding site [chemical binding]; other site
521010001813	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
521010001814	Response regulator receiver domain; Region: Response_reg; pfam00072
521010001815	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
521010001816	active site
521010001817	phosphorylation site [posttranslational modification]
521010001818	intermolecular recognition site; other site
521010001819	dimerization interface [polypeptide binding]; other site
521010001820	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
521010001821	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
521010001822	metal binding site [ion binding]; metal-binding site
521010001823	active site
521010001824	I-site; other site
521010001825	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
521010001826	substrate binding pocket [chemical binding]; other site
521010001827	membrane-bound complex binding site; other site
521010001828	hinge residues; other site
521010001829	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
521010001830	dimer interface [polypeptide binding]; other site
521010001831	phosphorylation site [posttranslational modification]
521010001832	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
521010001833	ATP binding site [chemical binding]; other site
521010001834	Mg2+ binding site [ion binding]; other site
521010001835	G-X-G motif; other site
521010001836	Response regulator receiver domain; Region: Response_reg; pfam00072
521010001837	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
521010001838	active site
521010001839	phosphorylation site [posttranslational modification]
521010001840	intermolecular recognition site; other site
521010001841	dimerization interface [polypeptide binding]; other site
521010001842	haloacid dehalogenase-like hydrolase; Region: Hydrolase_3; pfam08282
521010001843	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
521010001844	active site
521010001845	motif I; other site
521010001846	motif II; other site
521010001847	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
521010001848	Alkyladenine DNA glycosylase catalyzes the first step in base excision repair; Region: AAG; cd00540
521010001849	active site
521010001850	DNA binding site [nucleotide binding]
521010001851	Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]; Region: COG3613
521010001852	Predicted methyltransferases [General function prediction only]; Region: COG0313
521010001853	Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI; Region: RsmI; cd11648
521010001854	putative SAM binding site [chemical binding]; other site
521010001855	putative homodimer interface [polypeptide binding]; other site
521010001856	Domain of unknown function (DUF1893); Region: TM1506; pfam08973
521010001857	Uncharacterized protein family UPF0029; Region: UPF0029; pfam01205
521010001858	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010001859	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010001860	P-loop; other site
521010001861	Magnesium ion binding site [ion binding]; other site
521010001862	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010001863	Magnesium ion binding site [ion binding]; other site
521010001864	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
521010001865	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
521010001866	ParB-like nuclease domain; Region: ParB; smart00470
521010001867	Helix-turn-helix XRE-family like proteins; Region: HTH_XRE; smart00530
521010001868	non-specific DNA binding site [nucleotide binding]; other site
521010001869	salt bridge; other site
521010001870	sequence-specific DNA binding site [nucleotide binding]; other site
521010001871	DNA gyrase, A subunit; Region: gyrA; TIGR01063
521010001872	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
521010001873	CAP-like domain; other site
521010001874	active site
521010001875	primary dimer interface [polypeptide binding]; other site
521010001876	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
521010001877	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
521010001878	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
521010001879	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
521010001880	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
521010001881	DNA gyrase subunit B; Validated; Region: gyrB; PRK05644
521010001882	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
521010001883	ATP binding site [chemical binding]; other site
521010001884	Mg2+ binding site [ion binding]; other site
521010001885	G-X-G motif; other site
521010001886	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
521010001887	anchoring element; other site
521010001888	dimer interface [polypeptide binding]; other site
521010001889	ATP binding site [chemical binding]; other site
521010001890	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
521010001891	active site
521010001892	putative metal-binding site [ion binding]; other site
521010001893	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
521010001894	DnaA N-terminal domain; Region: DnaA_N; pfam11638
521010001895	chromosomal replication initiator protein DnaA; Region: DnaA; TIGR00362
521010001896	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010001897	Walker A motif; other site
521010001898	ATP binding site [chemical binding]; other site
521010001899	Walker B motif; other site
521010001900	arginine finger; other site
521010001901	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
521010001902	DnaA box-binding interface [nucleotide binding]; other site
521010001903	DNA polymerase III, beta subunit; Region: dnan; TIGR00663
521010001904	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
521010001905	putative DNA binding surface [nucleotide binding]; other site
521010001906	dimer interface [polypeptide binding]; other site
521010001907	beta-clamp/clamp loader binding surface; other site
521010001908	beta-clamp/translesion DNA polymerase binding surface; other site
521010001909	50S ribosomal protein L34; Reviewed; Region: rpmH; PRK00399
521010001910	Ribonuclease P; Region: Ribonuclease_P; cl00457
521010001911	membrane protein insertase; Provisional; Region: PRK01318
521010001912	membrane protein insertase, YidC/Oxa1 family, C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592
521010001913	Predicted RNA-binding protein [General function prediction only]; Region: Jag; COG1847
521010001914	jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation.  The KH motif is a beta-alpha-alpha-beta-beta...; Region: jag_KH; cd02414
521010001915	G-X-X-G motif; other site
521010001916	R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine...; Region: R3H_jag; cd02644
521010001917	RxxxH motif; other site
521010001918	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
521010001919	UDP glucuronic acid epimerase, extended (e) SDRs; Region: UDP_GE_SDE_e; cd05253
521010001920	putative NAD(P) binding site [chemical binding]; other site
521010001921	active site
521010001922	putative substrate binding site [chemical binding]; other site
521010001923	fructose-bisphosphate aldolase; Provisional; Region: PRK09197
521010001924	Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is...; Region: FBP_aldolase_IIA; cd00946
521010001925	active site
521010001926	intersubunit interface [polypeptide binding]; other site
521010001927	zinc binding site [ion binding]; other site
521010001928	Na+ binding site [ion binding]; other site
521010001929	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
521010001930	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
521010001931	dimer interface [polypeptide binding]; other site
521010001932	anticodon binding site; other site
521010001933	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
521010001934	homodimer interface [polypeptide binding]; other site
521010001935	motif 1; other site
521010001936	active site
521010001937	motif 2; other site
521010001938	GAD domain; Region: GAD; pfam02938
521010001939	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
521010001940	active site
521010001941	motif 3; other site
521010001942	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; COG0475
521010001943	Sodium/hydrogen exchanger family; Region: Na_H_Exchanger; pfam00999
521010001944	Sexual stage antigen s48/45 domain; Region: s48_45; smart00970
521010001945	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
521010001946	active site
521010001947	phosphorylation site [posttranslational modification]
521010001948	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cl00206
521010001949	active site
521010001950	regulatory protein interface [polypeptide binding]; other site
521010001951	regulatory phosphorylation site [posttranslational modification]; other site
521010001952	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cl00250
521010001953	Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309
521010001954	RNA polymerase sigma-54 factor; Region: rpoN_sigma; TIGR02395
521010001955	Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963
521010001956	Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552
521010001957	Chromate transport protein ChrA [Inorganic ion transport and metabolism]; Region: ChrA; COG2059
521010001958	Chromate transport protein ChrA [Inorganic ion transport and metabolism]; Region: ChrA; COG2059
521010001959	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
521010001960	Mechanosensitive ion channel; Region: MS_channel; pfam00924
521010001961	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
521010001962	This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1; Region: GT1_UGDG_like; cd03817
521010001963	putative ADP-binding pocket [chemical binding]; other site
521010001964	DNA polymerase III, delta subunit [DNA replication, recombination, and repair]; Region: HolA; COG1466
521010001965	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
521010001966	GIY-YIG motif/motif A; other site
521010001967	active site
521010001968	excinuclease ABC subunit C; Provisional; Region: uvrC; PRK14670
521010001969	catalytic site [active]
521010001970	putative DNA binding site [nucleotide binding]; other site
521010001971	metal binding site [ion binding]; metal-binding site
521010001972	UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459
521010001973	Concanavalin A-like lectin/glucanases superfamily; Region: Laminin_G_3; pfam13385
521010001974	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063
521010001975	Interdomain contacts; other site
521010001976	Tetratricopeptide repeat; Region: TPR_16; pfam13432
521010001977	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010001978	binding surface
521010001979	TPR motif; other site
521010001980	DNA polymerase III subunits gamma and tau; Validated; Region: PRK06647
521010001981	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010001982	Walker A motif; other site
521010001983	ATP binding site [chemical binding]; other site
521010001984	Walker B motif; other site
521010001985	DNA polymerase III subunit delta'; Validated; Region: PRK08485
521010001986	arginine finger; other site
521010001987	hypothetical protein; Provisional; Region: PRK14629
521010001988	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
521010001989	active site
521010001990	multimer interface [polypeptide binding]; other site
521010001991	Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]; Region: Imp; COG1452
521010001992	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1934
521010001993	ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137
521010001994	ATP-binding cassette component of YhbG transport system; Region: ABC_YhbG; cd03218
521010001995	Walker A/P-loop; other site
521010001996	ATP binding site [chemical binding]; other site
521010001997	Q-loop/lid; other site
521010001998	ABC transporter signature motif; other site
521010001999	Walker B; other site
521010002000	D-loop; other site
521010002001	H-loop/switch region; other site
521010002002	Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496
521010002003	uncharacterized protein, YfiH family; Region: TIGR00726
521010002004	Uncharacterized conserved protein [Function unknown]; Region: COG0327
521010002005	dinuclear metal center protein, YbgI/SA1388 family; Region: YbgI_SA1388; TIGR00486
521010002006	signal peptidase II; Provisional; Region: lspA; PRK01574
521010002007	lipoprotein signal peptidase; Provisional; Region: PRK14787
521010002008	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
521010002009	active site
521010002010	metal binding site [ion binding]; metal-binding site
521010002011	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Region: murA; TIGR01072
521010002012	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
521010002013	hinge; other site
521010002014	active site
521010002015	Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA; Region: MATE_yoeA_like; cd13138
521010002016	Na+-driven multidrug efflux pump [Defense mechanisms]; Region: NorM; COG0534
521010002017	elongation factor Tu; Reviewed; Region: PRK00049
521010002018	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
521010002019	G1 box; other site
521010002020	GEF interaction site [polypeptide binding]; other site
521010002021	GTP/Mg2+ binding site [chemical binding]; other site
521010002022	Switch I region; other site
521010002023	G2 box; other site
521010002024	G3 box; other site
521010002025	Switch II region; other site
521010002026	G4 box; other site
521010002027	G5 box; other site
521010002028	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
521010002029	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
521010002030	Antibiotic Binding Site [chemical binding]; other site
521010002031	30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596
521010002032	50S ribosomal protein L3; Validated; Region: rplC; PRK00001
521010002033	50S ribosomal protein L4; Provisional; Region: rplD; PRK05319
521010002034	50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738
521010002035	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
521010002036	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
521010002037	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
521010002038	30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357
521010002039	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
521010002040	putative translocon binding site; other site
521010002041	protein-rRNA interface [nucleotide binding]; other site
521010002042	30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310
521010002043	K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3  is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel.  The KH...; Region: 30S_S3_KH; cd02412
521010002044	G-X-X-G motif; other site
521010002045	Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189
521010002046	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
521010002047	23S rRNA interface [nucleotide binding]; other site
521010002048	5S rRNA interface [nucleotide binding]; other site
521010002049	putative antibiotic binding site [chemical binding]; other site
521010002050	L25 interface [polypeptide binding]; other site
521010002051	L27 interface [polypeptide binding]; other site
521010002052	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
521010002053	23S rRNA interface [nucleotide binding]; other site
521010002054	putative translocon interaction site; other site
521010002055	signal recognition particle (SRP54) interaction site; other site
521010002056	L23 interface [polypeptide binding]; other site
521010002057	trigger factor interaction site; other site
521010002058	30S ribosomal protein S17; Reviewed; Region: rpsQ; PRK05610
521010002059	50S ribosomal protein L14; Validated; Region: rplN; PRK05483
521010002060	50S ribosomal protein L24; Reviewed; Region: rplX; PRK00004
521010002061	KOW motif of Ribosomal Protein L26; Region: KOW_RPL26; cd06089
521010002062	RNA binding site [nucleotide binding]; other site
521010002063	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
521010002064	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
521010002065	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
521010002066	30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08061
521010002067	30S ribosomal protein S8; Validated; Region: rpsH; PRK00136
521010002068	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
521010002069	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
521010002070	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
521010002071	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
521010002072	5S rRNA interface [nucleotide binding]; other site
521010002073	23S rRNA interface [nucleotide binding]; other site
521010002074	L5 interface [polypeptide binding]; other site
521010002075	30S ribosomal protein S5; Validated; Region: rpsE; PRK00550
521010002076	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
521010002077	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
521010002078	ribosomal protein L30, bacterial/organelle; Region: rpmD_bact; TIGR01308
521010002079	ribosomal protein L15, bacterial/organelle; Region: rplO_bact; TIGR01071
521010002080	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
521010002081	SecY translocase; Region: SecY; pfam00344
521010002082	50S ribosomal protein L36; Reviewed; Region: rpmJ; PRK00465
521010002083	30S ribosomal protein S13; Validated; Region: rpsM; PRK05179
521010002084	30S ribosomal protein S13; Region: bact_S13; TIGR03631
521010002085	30S ribosomal protein S11; Validated; Region: PRK05309
521010002086	DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182
521010002087	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
521010002088	alphaNTD - beta interaction site [polypeptide binding]; other site
521010002089	alphaNTD homodimer interface [polypeptide binding]; other site
521010002090	alphaNTD - beta' interaction site [polypeptide binding]; other site
521010002091	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; pfam03118
521010002092	50S ribosomal protein L17; Validated; Region: rplQ; PRK05591
521010002093	phosphodiesterase; Provisional; Region: PRK12704
521010002094	KH domain; Region: KH_1; pfam00013
521010002095	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
521010002096	Zn2+ binding site [ion binding]; other site
521010002097	Mg2+ binding site [ion binding]; other site
521010002098	Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain; Region: MPP_DR1281; cd07382
521010002099	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
521010002100	putative active site [active]
521010002101	metal binding site [ion binding]; metal-binding site
521010002102	homodimer binding site [polypeptide binding]; other site
521010002103	Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: COG1189
521010002104	FtsJ-like methyltransferase; Region: FtsJ; pfam01728
521010002105	Spore germination protein [General function prediction only]; Region: COG5401
521010002106	Sporulation and spore germination; Region: Germane; smart00909
521010002107	GTP-binding protein Der; Reviewed; Region: PRK00093
521010002108	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
521010002109	G1 box; other site
521010002110	GTP/Mg2+ binding site [chemical binding]; other site
521010002111	Switch I region; other site
521010002112	G2 box; other site
521010002113	Switch II region; other site
521010002114	G3 box; other site
521010002115	G4 box; other site
521010002116	G5 box; other site
521010002117	EngA2 GTPase contains the second domain of EngA; Region: EngA2; cd01895
521010002118	G1 box; other site
521010002119	GTP/Mg2+ binding site [chemical binding]; other site
521010002120	Switch I region; other site
521010002121	G2 box; other site
521010002122	G3 box; other site
521010002123	Switch II region; other site
521010002124	G4 box; other site
521010002125	G5 box; other site
521010002126	Predicted hydrolase (HAD superfamily) [General function prediction only]; Region: COG1011
521010002127	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
521010002128	motif II; other site
521010002129	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
521010002130	V-type ATP synthase subunit I; Validated; Region: PRK05771
521010002131	V-type ATP synthase subunit I; Validated; Region: PRK05771
521010002132	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
521010002133	phenylalanyl-tRNA synthetase subunit alpha; Provisional; Region: pheS; PRK04172
521010002134	Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496
521010002135	dimer interface [polypeptide binding]; other site
521010002136	motif 1; other site
521010002137	active site
521010002138	motif 2; other site
521010002139	motif 3; other site
521010002140	phenylalanyl-tRNA synthetase, beta subunit; Region: pheT_arch; TIGR00471
521010002141	tRNA synthetase B5 domain; Region: B5; pfam03484
521010002142	Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA,  PheRS is an...; Region: PheRS_beta_core; cd00769
521010002143	dimer interface [polypeptide binding]; other site
521010002144	motif 1; other site
521010002145	motif 3; other site
521010002146	motif 2; other site
521010002147	thioredoxin-disulfide reductase; Region: TRX_reduct; TIGR01292
521010002148	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
521010002149	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
521010002150	rRNA methylase, putative, group 3; Region: rRNA_methyl_3; TIGR00186
521010002151	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; smart00967
521010002152	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
521010002153	chaperone protein DnaJ; Provisional; Region: PRK14285
521010002154	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
521010002155	HSP70 interaction site [polypeptide binding]; other site
521010002156	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
521010002157	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
521010002158	dimer interface [polypeptide binding]; other site
521010002159	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
521010002160	Nucleotide-binding domain of human HSPA9 and similar proteins; Region: HSPA9-Ssq1-like_NBD; cd10234
521010002161	nucleotide binding site [chemical binding]; other site
521010002162	NEF interaction site [polypeptide binding]; other site
521010002163	SBD interface [polypeptide binding]; other site
521010002164	Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: GrpE; COG0576
521010002165	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
521010002166	dimer interface [polypeptide binding]; other site
521010002167	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
521010002168	NAD synthetase; Provisional; Region: PRK13981
521010002169	Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes; Region: nitrilase; cl11424
521010002170	active site
521010002171	catalytic triad [active]
521010002172	dimer interface [polypeptide binding]; other site
521010002173	NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD...; Region: NAD_synthase; cd00553
521010002174	homodimer interface [polypeptide binding]; other site
521010002175	NAD binding pocket [chemical binding]; other site
521010002176	ATP binding pocket [chemical binding]; other site
521010002177	Mg binding site [ion binding]; other site
521010002178	active-site loop [active]
521010002179	pantothenate kinase; Reviewed; Region: PRK13326
521010002180	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
521010002181	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
521010002182	active site
521010002183	catalytic tetrad [active]
521010002184	Protein of unknown function (DUF2400); Region: DUF2400; cl09884
521010002185	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Region: Glucosaminidase; pfam01832
521010002186	putative hydrolase; Provisional; Region: PRK02113
521010002187	Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Region: PhnP; COG1235
521010002188	Methanothermobacter thermautotrophicus Mth212-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: Mth212-like_AP-endo; cd09085
521010002189	active site
521010002190	putative catalytic site [active]
521010002191	phosphate binding site A [ion binding]; other site
521010002192	DNA binding site [nucleotide binding]
521010002193	metal binding site A [ion binding]; metal-binding site
521010002194	putative AP binding site [nucleotide binding]; other site
521010002195	putative metal binding site B [ion binding]; other site
521010002196	phosphate binding site B [ion binding]; other site
521010002197	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
521010002198	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
521010002199	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
521010002200	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
521010002201	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010002202	binding surface
521010002203	TPR motif; other site
521010002204	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010002205	binding surface
521010002206	TPR repeat; Region: TPR_11; pfam13414
521010002207	TPR motif; other site
521010002208	TPR repeat; Region: TPR_11; pfam13414
521010002209	Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]; Region: CcmA; COG1664
521010002210	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
521010002211	Integral membrane protein, interacts with FtsH [General function prediction only]; Region: COG0670
521010002212	Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432
521010002213	translation elongation factor EF-G; Region: EF-G; TIGR00484
521010002214	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
521010002215	G1 box; other site
521010002216	putative GEF interaction site [polypeptide binding]; other site
521010002217	GTP/Mg2+ binding site [chemical binding]; other site
521010002218	Switch I region; other site
521010002219	G2 box; other site
521010002220	G3 box; other site
521010002221	Switch II region; other site
521010002222	G4 box; other site
521010002223	G5 box; other site
521010002224	mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating...; Region: mtEFG1_II_like; cd04091
521010002225	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
521010002226	mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating...; Region: mtEFG1_C; cd04097
521010002227	KTSC domain; Region: KTSC; pfam13619
521010002228	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010002229	binding surface
521010002230	TPR motif; other site
521010002231	phosphoribosylpyrophosphate synthetase; Provisional; Region: PRK06827
521010002232	N-terminal domain of ribose phosphate pyrophosphokinase; Region: Pribosyltran_N; pfam13793
521010002233	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
521010002234	active site
521010002235	Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]; Region: XylB; COG1070
521010002236	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
521010002237	nucleotide binding site [chemical binding]; other site
521010002238	Uncharacterized protein conserved in bacteria [Function unknown]; Region: DedD; COG3147
521010002239	Sporulation related domain; Region: SPOR; pfam05036
521010002240	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
521010002241	CoA-binding site [chemical binding]; other site
521010002242	ATP-binding [chemical binding]; other site
521010002243	DNA polymerase I; Region: pola; TIGR00593
521010002244	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
521010002245	active site
521010002246	metal binding site 1 [ion binding]; metal-binding site
521010002247	putative 5' ssDNA interaction site; other site
521010002248	metal binding site 3; metal-binding site
521010002249	metal binding site 2 [ion binding]; metal-binding site
521010002250	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
521010002251	putative DNA binding site [nucleotide binding]; other site
521010002252	putative metal binding site [ion binding]; other site
521010002253	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139
521010002254	active site
521010002255	catalytic site [active]
521010002256	substrate binding site [chemical binding]; other site
521010002257	Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637
521010002258	active site
521010002259	DNA binding site [nucleotide binding]
521010002260	catalytic site [active]
521010002261	Flagellar protein FliS; Region: FliS; cl00654
521010002262	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
521010002263	Response regulator receiver domain; Region: Response_reg; pfam00072
521010002264	active site
521010002265	phosphorylation site [posttranslational modification]
521010002266	intermolecular recognition site; other site
521010002267	dimerization interface [polypeptide binding]; other site
521010002268	NAD-dependent DNA ligase LigA; Provisional; Region: ligA; PRK14350
521010002269	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114
521010002270	nucleotide binding pocket [chemical binding]; other site
521010002271	K-X-D-G motif; other site
521010002272	catalytic site [active]
521010002273	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
521010002274	NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119
521010002275	Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo...; Region: BRCT; cd00027
521010002276	Dimer interface [polypeptide binding]; other site
521010002277	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
521010002278	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080
521010002279	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]; Region: CoxM; COG1319
521010002280	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
521010002281	dimerization domain swap beta strand [polypeptide binding]; other site
521010002282	regulatory protein interface [polypeptide binding]; other site
521010002283	active site
521010002284	regulatory phosphorylation site [posttranslational modification]; other site
521010002285	phosphoenolpyruvate-protein phosphotransferase; Region: PTS_I_fam; TIGR01417
521010002286	PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524
521010002287	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
521010002288	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
521010002289	PTS system glucose-specific transporter subunit; Provisional; Region: PRK09439
521010002290	HPr interaction site; other site
521010002291	glycerol kinase (GK) interaction site [polypeptide binding]; other site
521010002292	active site
521010002293	phosphorylation site [posttranslational modification]
521010002294	heat shock protein 90; Provisional; Region: PRK05218
521010002295	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
521010002296	ATP binding site [chemical binding]; other site
521010002297	Mg2+ binding site [ion binding]; other site
521010002298	G-X-G motif; other site
521010002299	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
521010002300	6-phosphogluconate dehydrogenase (decarboxylating); Region: gnd; TIGR00873
521010002301	6-phosphogluconate dehydrogenase, C-terminal domain; Region: 6PGD; pfam00393
521010002302	Protein of unknown function (DUF3996); Region: DUF3996; pfam13161
521010002303	Protein of unknown function (DUF3996); Region: DUF3996; pfam13161
521010002304	Protein of unknown function (DUF3996); Region: DUF3996; pfam13161
521010002305	CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732
521010002306	putative CheA interaction surface; other site
521010002307	Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604
521010002308	Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]; Region: CheA; COG0643
521010002309	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
521010002310	putative binding surface; other site
521010002311	active site
521010002312	Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895
521010002313	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
521010002314	ATP binding site [chemical binding]; other site
521010002315	Mg2+ binding site [ion binding]; other site
521010002316	G-X-G motif; other site
521010002317	CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731
521010002318	Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]; Region: CheB; COG2201
521010002319	CheB methylesterase; Region: CheB_methylest; pfam01339
521010002320	chromosome segregation protein; Provisional; Region: PRK01156
521010002321	Response regulator receiver domain; Region: Response_reg; pfam00072
521010002322	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
521010002323	active site
521010002324	phosphorylation site [posttranslational modification]
521010002325	intermolecular recognition site; other site
521010002326	dimerization interface [polypeptide binding]; other site
521010002327	AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back...; Region: AAK_UMPK-PyrH-Pf; cd04253
521010002328	nucleotide binding site [chemical binding]; other site
521010002329	homodimeric interface [polypeptide binding]; other site
521010002330	uridine monophosphate binding site [chemical binding]; other site
521010002331	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
521010002332	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
521010002333	active site
521010002334	ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122
521010002335	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010002336	Walker A/P-loop; other site
521010002337	ATP binding site [chemical binding]; other site
521010002338	Q-loop/lid; other site
521010002339	ABC transporter signature motif; other site
521010002340	Walker B; other site
521010002341	D-loop; other site
521010002342	H-loop/switch region; other site
521010002343	CTP synthase; Region: PyrG; TIGR00337
521010002344	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
521010002345	Catalytic site [active]
521010002346	active site
521010002347	UTP binding site [chemical binding]; other site
521010002348	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
521010002349	active site
521010002350	putative oxyanion hole; other site
521010002351	catalytic triad [active]
521010002352	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
521010002353	putative CheW interface [polypeptide binding]; other site
521010002354	DNA-directed DNA polymerase III (polc); Region: polc; TIGR00594
521010002355	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3; Region: PHP_PolIIIA_DnaE3; cd12113
521010002356	active site
521010002357	PHP Thumb interface [polypeptide binding]; other site
521010002358	metal binding site [ion binding]; metal-binding site
521010002359	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
521010002360	generic binding surface I; other site
521010002361	generic binding surface II; other site
521010002362	YGGT family; Region: YGGT; cl00508
521010002363	ATP-dependent DNA helicase RecG; Region: recG; TIGR00643
521010002364	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
521010002365	ATP binding site [chemical binding]; other site
521010002366	putative Mg++ binding site [ion binding]; other site
521010002367	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
521010002368	nucleotide binding region [chemical binding]; other site
521010002369	ATP-binding site [chemical binding]; other site
521010002370	D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: VanY; COG1876
521010002371	D-alanyl-D-alanine carboxypeptidase; Region: VanY; pfam02557
521010002372	Multidrug and toxic compound extrusion family and similar proteins; Region: MATE_like; cl09326
521010002373	putative efflux protein, MATE family; Region: matE; TIGR00797
521010002374	Na+-driven multidrug efflux pump [Defense mechanisms]; Region: NorM; COG0534
521010002375	MatE; Region: MatE; pfam01554
521010002376	UDP-N-acetylmuramoylalanine--D-glutamate ligase; Region: murD; TIGR01087
521010002377	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
521010002378	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
521010002379	Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]; Region: COG2348
521010002380	methionyl-tRNA synthetase; Reviewed; Region: metG; PRK00133
521010002381	catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814
521010002382	active site
521010002383	HIGH motif; other site
521010002384	KMSKS motif; other site
521010002385	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
521010002386	tRNA binding surface [nucleotide binding]; other site
521010002387	anticodon binding site; other site
521010002388	The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human...; Region: tRNA_bindingDomain; cd02153
521010002389	putative tRNA-binding site [nucleotide binding]; other site
521010002390	Nucleoside phosphorylase [Nucleotide transport and metabolism]; Region: Pfs; COG0775
521010002391	Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl17212
521010002392	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed; Region: ksgA; PRK00274
521010002393	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
521010002394	S-adenosylmethionine binding site [chemical binding]; other site
521010002395	Competence protein; Region: Competence; cl00471
521010002396	CAAX protease self-immunity; Region: Abi; pfam02517
521010002397	Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022
521010002398	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
521010002399	acyl-activating enzyme (AAE) consensus motif; other site
521010002400	AMP binding site [chemical binding]; other site
521010002401	active site
521010002402	CoA binding site [chemical binding]; other site
521010002403	arginyl-tRNA synthetase; Region: argS; TIGR00456
521010002404	catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671
521010002405	active site
521010002406	HIGH motif; other site
521010002407	KMSK motif region; other site
521010002408	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
521010002409	tRNA binding surface [nucleotide binding]; other site
521010002410	anticodon binding site; other site
521010002411	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
521010002412	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
521010002413	dimer interface [polypeptide binding]; other site
521010002414	putative CheW interface [polypeptide binding]; other site
521010002415	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
521010002416	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
521010002417	putative CheW interface [polypeptide binding]; other site
521010002418	UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: PRK14650
521010002419	FAD binding domain; Region: FAD_binding_4; pfam01565
521010002420	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
521010002421	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
521010002422	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
521010002423	KMSKS motif; other site
521010002424	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
521010002425	IPT/TIG domain; Region: TIG; pfam01833
521010002426	serine hydroxymethyltransferase; Reviewed; Region: glyA; PRK00011
521010002427	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
521010002428	dimer interface [polypeptide binding]; other site
521010002429	active site
521010002430	glycine-pyridoxal phosphate binding site [chemical binding]; other site
521010002431	folate binding site [chemical binding]; other site
521010002432	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
521010002433	HSP70 interaction site [polypeptide binding]; other site
521010002434	Borrelia burgdorferi attachment protein P66; Region: Attachment_P66; pfam11263
521010002435	L-lactate permease [Energy production and conversion]; Region: LldP; COG1620
521010002436	L-lactate permease; Region: Lactate_perm; cl00701
521010002437	D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686
521010002438	Beta-lactamase enzyme family; Region: Beta-lactamase2; cl17872
521010002439	Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; pfam07943
521010002440	chemoreceptor glutamine deamidase CheD; Provisional; Region: PRK13494
521010002441	Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]; Region: UvrD; COG0210
521010002442	Part of AAA domain; Region: AAA_19; pfam13245
521010002443	Family description; Region: UvrD_C_2; pfam13538
521010002444	Xaa-His dipeptidase; Region: aa-his-dipept; TIGR01893
521010002445	M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide; Region: M20_pepD; cd03890
521010002446	metal binding site [ion binding]; metal-binding site
521010002447	dimer interface [polypeptide binding]; other site
521010002448	trigger factor; Provisional; Region: tig; PRK01490
521010002449	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
521010002450	Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: ClpP; COG0740
521010002451	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
521010002452	oligomer interface [polypeptide binding]; other site
521010002453	active site residues [active]
521010002454	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
521010002455	ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689
521010002456	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010002457	Walker A motif; other site
521010002458	ATP binding site [chemical binding]; other site
521010002459	Walker B motif; other site
521010002460	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
521010002461	ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466
521010002462	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010002463	Walker A motif; other site
521010002464	ATP binding site [chemical binding]; other site
521010002465	Walker B motif; other site
521010002466	arginine finger; other site
521010002467	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
521010002468	30S ribosomal protein S4; Validated; Region: rpsD; PRK05327
521010002469	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
521010002470	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
521010002471	RNA binding surface [nucleotide binding]; other site
521010002472	Predicted acetyltransferase [General function prediction only]; Region: COG2388
521010002473	Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053
521010002474	Cation efflux family; Region: Cation_efflux; pfam01545
521010002475	Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283
521010002476	active site
521010002477	catalytic motif [active]
521010002478	Zn binding site [ion binding]; other site
521010002479	Exopolyphosphatase-related proteins [General function prediction only]; Region: COG0618
521010002480	DHH family; Region: DHH; pfam01368
521010002481	DHHA1 domain; Region: DHHA1; pfam02272
521010002482	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
521010002483	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; cl07971
521010002484	DJ-1 family protein; Region: not_thiJ; TIGR01383
521010002485	Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135
521010002486	conserved cys residue [active]
521010002487	acetate kinase A/propionate kinase 2; Reviewed; Region: PRK00180
521010002488	propionate/acetate kinase; Provisional; Region: PRK12379
521010002489	Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197
521010002490	CarD-like/TRCF domain; Region: CarD_CdnL_TRCF; pfam02559
521010002491	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
521010002492	ATP binding site [chemical binding]; other site
521010002493	putative Mg++ binding site [ion binding]; other site
521010002494	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
521010002495	nucleotide binding region [chemical binding]; other site
521010002496	ATP-binding site [chemical binding]; other site
521010002497	TRCF domain; Region: TRCF; pfam03461
521010002498	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
521010002499	FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388
521010002500	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
521010002501	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
521010002502	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
521010002503	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
521010002504	N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: AmiC; COG0860
521010002505	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
521010002506	active site
521010002507	metal binding site [ion binding]; metal-binding site
521010002508	ribonuclease M5; Region: 5S_RNA_mat_M5; TIGR00334
521010002509	TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea.  RNase M5 catalyzes the maturation of 5S rRNA in low...; Region: TOPRIM_RNase_M5_like; cd01027
521010002510	putative active site [active]
521010002511	putative metal binding site [ion binding]; other site
521010002512	Domain of unknown function (DUF4093); Region: DUF4093; pfam13331
521010002513	Zinc peptidases M18, M20, M28, and M42; Region: Zinc_peptidase_like; cl14876
521010002514	Aminopeptidase I zinc metalloprotease (M18); Region: Peptidase_M18; pfam02127
521010002515	metal binding site [ion binding]; metal-binding site
521010002516	PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional; Region: PRK09765
521010002517	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
521010002518	active site
521010002519	phosphorylation site [posttranslational modification]
521010002520	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
521010002521	active site
521010002522	P-loop; other site
521010002523	phosphorylation site [posttranslational modification]
521010002524	PTS system, fructose subfamily, IIC component; Region: PTS_IIC_fructo; TIGR01427
521010002525	Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]; Region: FruK; COG1105
521010002526	1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose...; Region: FruK_PfkB_like; cd01164
521010002527	putative substrate binding site [chemical binding]; other site
521010002528	putative ATP binding site [chemical binding]; other site
521010002529	exodeoxyribonuclease V, alpha subunit; Region: recD; TIGR01447
521010002530	AAA domain; Region: AAA_30; pfam13604
521010002531	Family description; Region: UvrD_C_2; pfam13538
521010002532	ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]; Region: RecB; COG1074
521010002533	Part of AAA domain; Region: AAA_19; pfam13245
521010002534	PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1; pfam12705
521010002535	Exonuclease V gamma subunit [DNA replication, recombination, and repair]; Region: RecC; COG1330
521010002536	nicotinate phosphoribosyltransferase; Validated; Region: PRK09243
521010002537	Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction...; Region: NAPRTase_A; cd01570
521010002538	active site
521010002539	glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722
521010002540	Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479
521010002541	Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781
521010002542	Na+/H+ antiporter [Energy production and conversion]; Region: NhaC; COG1757
521010002543	C4-dicarboxylate transporter [Energy production and conversion]; Region: DcuC; cl17322
521010002544	Na+/H+ antiporter [Energy production and conversion]; Region: NhaC; COG1757
521010002545	C4-dicarboxylate transporter [Energy production and conversion]; Region: DcuC; cl17322
521010002546	Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]; Region: PotD; COG0687
521010002547	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
521010002548	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
521010002549	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
521010002550	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010002551	dimer interface [polypeptide binding]; other site
521010002552	conserved gate region; other site
521010002553	putative PBP binding loops; other site
521010002554	ABC-ATPase subunit interface; other site
521010002555	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010002556	dimer interface [polypeptide binding]; other site
521010002557	conserved gate region; other site
521010002558	putative PBP binding loops; other site
521010002559	ABC-ATPase subunit interface; other site
521010002560	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
521010002561	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010002562	Walker A/P-loop; other site
521010002563	ATP binding site [chemical binding]; other site
521010002564	Q-loop/lid; other site
521010002565	ABC transporter signature motif; other site
521010002566	Walker B; other site
521010002567	D-loop; other site
521010002568	H-loop/switch region; other site
521010002569	TOBE domain; Region: TOBE_2; pfam08402
521010002570	GTPase YlqF; Reviewed; Region: rbgA; PRK09563
521010002571	Circularly permuted YlqF GTPase; Region: YlqF; cd01856
521010002572	GTP/Mg2+ binding site [chemical binding]; other site
521010002573	G4 box; other site
521010002574	G5 box; other site
521010002575	50S ribosome-binding GTPase; Region: MMR_HSR1; pfam01926
521010002576	G1 box; other site
521010002577	Switch I region; other site
521010002578	G2 box; other site
521010002579	G3 box; other site
521010002580	Switch II region; other site
521010002581	N-acetylmannosamine-6-phosphate 2-epimerase; Provisional; Region: PRK01130
521010002582	N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of...; Region: NanE; cd04729
521010002583	putative active site cavity [active]
521010002584	PTS system, glucose-specific IIBC component; Region: PTS-II-BC-glcB; TIGR02002
521010002585	PTS system, maltose and glucose-specific subfamily, IIC component; Region: pts-Glc; TIGR00852
521010002586	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
521010002587	active site turn [active]
521010002588	phosphorylation site [posttranslational modification]
521010002589	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
521010002590	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
521010002591	metal binding site 2 [ion binding]; metal-binding site
521010002592	putative DNA binding helix; other site
521010002593	metal binding site 1 [ion binding]; metal-binding site
521010002594	structural Zn2+ binding site [ion binding]; other site
521010002595	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
521010002596	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
521010002597	ring oligomerisation interface [polypeptide binding]; other site
521010002598	ATP/Mg binding site [chemical binding]; other site
521010002599	stacking interactions; other site
521010002600	hinge regions; other site
521010002601	preprotein translocase, YajC subunit; Region: yajC; TIGR00739
521010002602	protein-export membrane protein SecD; Region: secD; TIGR01129
521010002603	protein-export membrane protein, SecD/SecF family; Region: 2A0604s01; TIGR00916
521010002604	protein-export membrane protein SecF; Region: 3a0501s07; TIGR00966
521010002605	Protein export membrane protein; Region: SecD_SecF; pfam02355
521010002606	chaperone protein DnaJ; Provisional; Region: PRK14299
521010002607	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
521010002608	HSP70 interaction site [polypeptide binding]; other site
521010002609	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
521010002610	dimer interface [polypeptide binding]; other site
521010002611	Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]; Region: HemN; COG0635
521010002612	RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398
521010002613	tetramer (dimer of dimers) interface [polypeptide binding]; other site
521010002614	active site
521010002615	dimer interface [polypeptide binding]; other site
521010002616	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
521010002617	catalytic core [active]
521010002618	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
521010002619	lysyl-tRNA synthetase, archaeal and spirochete; Region: lysS_arch; TIGR00467
521010002620	catalytic core domain of  class I lysyl tRNA synthetase; Region: LysRS_core_class_I; cd00674
521010002621	active site
521010002622	HIGH motif; other site
521010002623	KMSKS motif; other site
521010002624	GTPase Era; Reviewed; Region: era; PRK00089
521010002625	E. coli Ras-like protein (Era) is a multifunctional GTPase; Region: Era; cd04163
521010002626	G1 box; other site
521010002627	GTP/Mg2+ binding site [chemical binding]; other site
521010002628	Switch I region; other site
521010002629	G2 box; other site
521010002630	Switch II region; other site
521010002631	G3 box; other site
521010002632	G4 box; other site
521010002633	G5 box; other site
521010002634	KH domain; Region: KH_2; pfam07650
521010002635	Double zinc ribbon; Region: DZR; pfam12773
521010002636	Uncharacterized conserved protein [Function unknown]; Region: COG1430
521010002637	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
521010002638	active site
521010002639	N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: AmiC; COG0860
521010002640	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
521010002641	active site
521010002642	metal binding site [ion binding]; metal-binding site
521010002643	Flagellar filament outer layer protein Flaa; Region: FlaA; pfam04620
521010002644	Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]; Region: CheA; COG0643
521010002645	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
521010002646	putative binding surface; other site
521010002647	active site
521010002648	P2 response regulator binding domain; Region: P2; pfam07194
521010002649	Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895
521010002650	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
521010002651	ATP binding site [chemical binding]; other site
521010002652	Mg2+ binding site [ion binding]; other site
521010002653	G-X-G motif; other site
521010002654	CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731
521010002655	CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732
521010002656	putative CheA interaction surface; other site
521010002657	Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]; Region: CheR; COG1352
521010002658	CheR methyltransferase, SAM binding domain; Region: CheR; pfam01739
521010002659	Predicted inhibitor of MCP methylation, homolog of CheC [Cell motility and secretion]; Region: COG1406
521010002660	Chemotaxis phosphatase CheX; Region: CheX; pfam13690
521010002661	Response regulator receiver domain; Region: Response_reg; pfam00072
521010002662	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
521010002663	active site
521010002664	phosphorylation site [posttranslational modification]
521010002665	intermolecular recognition site; other site
521010002666	dimerization interface [polypeptide binding]; other site
521010002667	Predicted phosphatases [General function prediction only]; Region: Gph; COG0546
521010002668	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
521010002669	motif II; other site
521010002670	ABC-type uncharacterized transport systems, ATPase components [General function prediction only]; Region: COG3845
521010002671	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
521010002672	Walker A/P-loop; other site
521010002673	ATP binding site [chemical binding]; other site
521010002674	Q-loop/lid; other site
521010002675	ABC transporter signature motif; other site
521010002676	Walker B; other site
521010002677	D-loop; other site
521010002678	H-loop/switch region; other site
521010002679	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010002680	Walker A/P-loop; other site
521010002681	ATP binding site [chemical binding]; other site
521010002682	Q-loop/lid; other site
521010002683	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010002684	ABC transporter signature motif; other site
521010002685	Walker B; other site
521010002686	D-loop; other site
521010002687	H-loop/switch region; other site
521010002688	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
521010002689	Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette; Region: TM_PBP1_transp_TpRbsC_like; cd06580
521010002690	Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette; Region: TM_PBP1_transp_TpRbsC_like; cd06580
521010002691	TM-ABC transporter signature motif; other site
521010002692	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
521010002693	Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette; Region: TM_PBP1_transp_TpRbsC_like; cd06580
521010002694	TM-ABC transporter signature motif; other site
521010002695	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
521010002696	dimer interface [polypeptide binding]; other site
521010002697	Methyl-accepting chemotaxis protein (MCP) signalling domain; Region: MCPsignal; pfam00015
521010002698	putative CheW interface [polypeptide binding]; other site
521010002699	HAMP domain; Region: HAMP; pfam00672
521010002700	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
521010002701	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
521010002702	dimer interface [polypeptide binding]; other site
521010002703	putative CheW interface [polypeptide binding]; other site
521010002704	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Region: trmU; TIGR00420
521010002705	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
521010002706	Ligand Binding Site [chemical binding]; other site
521010002707	"initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are...; Region: init_cond_enzymes; cd00827
521010002708	3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade; Region: HMG-CoA-S_prok; TIGR01835
521010002709	dimer interface [polypeptide binding]; other site
521010002710	active site
521010002711	isopentenyl-diphosphate delta-isomerase, type 2; Region: IPP_isom_2; TIGR02151
521010002712	Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal; Region: IDI-2_FMN; cd02811
521010002713	homotetramer interface [polypeptide binding]; other site
521010002714	FMN binding site [chemical binding]; other site
521010002715	homodimer contacts [polypeptide binding]; other site
521010002716	putative active site [active]
521010002717	putative substrate binding site [chemical binding]; other site
521010002718	Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR); Region: HMG-CoA_reductase_classII; cd00644
521010002719	homodimer interface [polypeptide binding]; other site
521010002720	catalytic residues [active]
521010002721	NAD binding site [chemical binding]; other site
521010002722	substrate binding pocket [chemical binding]; other site
521010002723	flexible flap; other site
521010002724	Mevalonate pyrophosphate decarboxylase [Lipid metabolism]; Region: MVD1; COG3407
521010002725	diphosphomevalonate decarboxylase; Region: PLN02407
521010002726	Phosphomevalonate kinase [Lipid metabolism]; Region: ERG8; COG3890
521010002727	mevalonate kinase; Region: mevalon_kin; TIGR00549
521010002728	Uncharacterized protein with SCP/PR1 domains [Function unknown]; Region: COG2340
521010002729	SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5...; Region: SCP_bacterial; cd05379
521010002730	DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]; Region: Dps; COG0783
521010002731	DPS protein, ferritin-like diiron-binding domain; Region: DPS; cd01043
521010002732	dimerization interface [polypeptide binding]; other site
521010002733	DPS ferroxidase diiron center [ion binding]; other site
521010002734	ion pore; other site
521010002735	elongation factor G; Reviewed; Region: PRK13351
521010002736	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
521010002737	G1 box; other site
521010002738	putative GEF interaction site [polypeptide binding]; other site
521010002739	GTP/Mg2+ binding site [chemical binding]; other site
521010002740	Switch I region; other site
521010002741	G2 box; other site
521010002742	G3 box; other site
521010002743	Switch II region; other site
521010002744	G4 box; other site
521010002745	G5 box; other site
521010002746	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
521010002747	Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily...; Region: EFG_like_IV; cd01680
521010002748	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
521010002749	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
521010002750	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
521010002751	signal recognition particle protein; Provisional; Region: PRK10867
521010002752	SRP54-type protein, helical bundle domain; Region: SRP54_N; smart00963
521010002753	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
521010002754	P loop; other site
521010002755	GTP binding site [chemical binding]; other site
521010002756	Signal peptide binding domain; Region: SRP_SPB; pfam02978
521010002757	30S ribosomal protein S16; Reviewed; Region: rpsP; PRK00040
521010002758	Predicted RNA-binding protein (contains KH domain) [General function prediction only]; Region: COG1837
521010002759	KH-II  (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins  (e.g. ribosomal protein S3), transcription factors (e.g. NusA_K), and post-transcriptional...; Region: KH-II; cl00098
521010002760	16S rRNA-processing protein RimM; Provisional; Region: rimM; PRK14594
521010002761	RimM N-terminal domain; Region: RimM; pfam01782
521010002762	tRNA (guanine-N(1)-)-methyltransferase; Reviewed; Region: trmD; PRK00026
521010002763	50S ribosomal protein L19; Provisional; Region: rplS; PRK05338
521010002764	pantetheine-phosphate adenylyltransferase, bacterial; Region: coaD_prev_kdtB; TIGR01510
521010002765	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
521010002766	active site
521010002767	nucleotide binding site [chemical binding]; other site
521010002768	HIGH motif; other site
521010002769	KMSKS motif; other site
521010002770	Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Region: RpmF; COG0333
521010002771	acyl carrier protein; Provisional; Region: acpP; PRK00982
521010002772	ribonuclease III; Reviewed; Region: rnc; PRK00102
521010002773	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
521010002774	dimerization interface [polypeptide binding]; other site
521010002775	active site
521010002776	metal binding site [ion binding]; metal-binding site
521010002777	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
521010002778	dsRNA binding site [nucleotide binding]; other site
521010002779	tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]; Region: PcnB; COG0617
521010002780	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
521010002781	active site
521010002782	NTP binding site [chemical binding]; other site
521010002783	metal binding triad [ion binding]; metal-binding site
521010002784	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
521010002785	tRNA nucleotidyltransferase domain 2 putative; Region: tRNA_NucTran2_2; pfam13735
521010002786	conserved hypothetical protein, YceG family; Region: TIGR00247
521010002787	proteins similar to Escherichia coli yceG; Region: yceG_like; cd08010
521010002788	dimerization interface [polypeptide binding]; other site
521010002789	DNA primase, catalytic core; Region: dnaG; TIGR01391
521010002790	CHC2 zinc finger; Region: zf-CHC2; pfam01807
521010002791	DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275
521010002792	TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364
521010002793	active site
521010002794	metal binding site [ion binding]; metal-binding site
521010002795	interdomain interaction site; other site
521010002796	DnaB-helicase binding domain of primase; Region: DnaB_bind; pfam10410
521010002797	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
521010002798	Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979
521010002799	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
521010002800	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
521010002801	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
521010002802	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
521010002803	DNA binding residues [nucleotide binding]
521010002804	Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]; Region: COG1579
521010002805	Putative zinc ribbon domain; Region: DUF164; pfam02591
521010002806	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
521010002807	binding surface
521010002808	TPR repeat; Region: TPR_11; pfam13414
521010002809	TPR motif; other site
521010002810	cell shape determining protein, MreB/Mrl family; Region: mreB; TIGR00904
521010002811	MreB and similar proteins; Region: MreB_like; cd10225
521010002812	putative protofilament interaction site [polypeptide binding]; other site
521010002813	nucleotide binding site [chemical binding]; other site
521010002814	RodZ interaction site [polypeptide binding]; other site
521010002815	Mg binding site [ion binding]; other site
521010002816	rod shape-determining protein MreC; Region: mreC; TIGR00219
521010002817	rod shape-determining protein MreC; Region: MreC; pfam04085
521010002818	penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423
521010002819	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
521010002820	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
521010002821	Cell cycle protein; Region: FTSW_RODA_SPOVE; cl00511
521010002822	Cell cycle protein; Region: FTSW_RODA_SPOVE; cl00511
521010002823	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK12305
521010002824	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
521010002825	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
521010002826	active site
521010002827	dimer interface [polypeptide binding]; other site
521010002828	motif 1; other site
521010002829	motif 2; other site
521010002830	motif 3; other site
521010002831	HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for...; Region: HGTP_anticodon; cl00266
521010002832	anticodon binding site; other site
521010002833	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Region: pgsA; TIGR00560
521010002834	CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases; Region: CYTH-like_Pase; cl11964
521010002835	putative active site; other site
521010002836	putative metal binding residues [ion binding]; other site
521010002837	signature motif; other site
521010002838	putative triphosphate binding site [ion binding]; other site
521010002839	Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: TrkG; COG0168
521010002840	potassium uptake protein, TrkH family; Region: 2a38; TIGR00933
521010002841	K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569
521010002842	TrkA-N domain; Region: TrkA_N; pfam02254
521010002843	TrkA-C domain; Region: TrkA_C; pfam02080
521010002844	Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]; Region: flhG; COG0455
521010002845	FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by...; Region: FleN-like; cd02038
521010002846	P-loop; other site
521010002847	diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional; Region: PRK06830
521010002848	6-phosphofructokinase; Region: PFKA_ATP; TIGR02482
521010002849	active site
521010002850	ADP/pyrophosphate binding site [chemical binding]; other site
521010002851	dimerization interface [polypeptide binding]; other site
521010002852	allosteric effector site; other site
521010002853	fructose-1,6-bisphosphate binding site; other site
521010002854	coenzyme A disulfide reductase; Reviewed; Region: PRK09564
521010002855	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
521010002856	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
521010002857	Predicted Na+/dicarboxylate symporter [General function prediction only]; Region: COG1823
521010002858	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
521010002859	glucose-6-phosphate isomerase; Provisional; Region: pgi; PRK14095
521010002860	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
521010002861	active site
521010002862	dimer interface [polypeptide binding]; other site
521010002863	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
521010002864	dimer interface [polypeptide binding]; other site
521010002865	active site
521010002866	ParB-like nuclease domain; Region: ParBc; pfam02195
521010002867	Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475
521010002868	Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]; Region: MrcA; COG5009
521010002869	Transglycosylase; Region: Transgly; pfam00912
521010002870	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
521010002871	tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family; Region: TIGR00057
521010002872	Putative GTP-binding controlling metal-binding; Region: SUA5; pfam03481
521010002873	Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; pfam03330
521010002874	rare lipoprotein A; Region: rlpA; TIGR00413
521010002875	Sporulation related domain; Region: SPOR; pfam05036
521010002876	tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]; Region: COG0042
521010002877	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
521010002878	FMN binding site [chemical binding]; other site
521010002879	active site
521010002880	catalytic residues [active]
521010002881	substrate binding site [chemical binding]; other site
521010002882	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
521010002883	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
521010002884	active site
521010002885	HIGH motif; other site
521010002886	nucleotide binding site [chemical binding]; other site
521010002887	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
521010002888	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
521010002889	active site
521010002890	KMSKS motif; other site
521010002891	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
521010002892	tRNA binding surface [nucleotide binding]; other site
521010002893	anticodon binding site; other site
521010002894	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
521010002895	Uncharacterized conserved protein [Function unknown]; Region: COG4121
521010002896	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
521010002897	oligomerisation interface [polypeptide binding]; other site
521010002898	mobile loop; other site
521010002899	roof hairpin; other site
521010002900	ABC transporter ATP-binding protein; Provisional; Region: PRK15064
521010002901	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010002902	Walker A/P-loop; other site
521010002903	ATP binding site [chemical binding]; other site
521010002904	Q-loop/lid; other site
521010002905	ABC transporter signature motif; other site
521010002906	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
521010002907	Walker B; other site
521010002908	D-loop; other site
521010002909	H-loop/switch region; other site
521010002910	ABC transporter; Region: ABC_tran_2; pfam12848
521010002911	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
521010002912	PQQ-dependent dehydrogenases and related proteins; Region: PQQ_DH_like; cl11493
521010002913	PQQ-like domain; Region: PQQ_2; pfam13360
521010002914	active site
521010002915	Borrelia P83/100 protein; Region: Borrelia_P83; pfam05262
521010002916	Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177
521010002917	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
521010002918	minor groove reading motif; other site
521010002919	helix-hairpin-helix signature motif; other site
521010002920	substrate binding pocket [chemical binding]; other site
521010002921	active site
521010002922	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4239
521010002923	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010002924	dimer interface [polypeptide binding]; other site
521010002925	conserved gate region; other site
521010002926	putative PBP binding loops; other site
521010002927	ABC-ATPase subunit interface; other site
521010002928	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
521010002929	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
521010002930	ABC-ATPase subunit interface; other site
521010002931	putative PBP binding loops; other site
521010002932	Septum formation initiator [Cell division and chromosome partitioning]; Region: COG2919
521010002933	Septum formation initiator; Region: DivIC; pfam04977
521010002934	Domain of unknown function (DUF4340); Region: DUF4340; pfam14238
521010002935	ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion]; Region: GldG; COG3225
521010002936	gliding motility-associated ABC transporter permease protein GldF; Region: ABC_perm_GldF; TIGR03518
521010002937	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
521010002938	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
521010002939	Walker A/P-loop; other site
521010002940	ATP binding site [chemical binding]; other site
521010002941	Q-loop/lid; other site
521010002942	ABC transporter signature motif; other site
521010002943	Walker B; other site
521010002944	D-loop; other site
521010002945	H-loop/switch region; other site
521010002946	ribonuclease Z; Region: RNase_Z; TIGR02651
521010002947	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
521010002948	hydroxyglutarate oxidase; Provisional; Region: PRK11728
521010002949	ATP-dependent Clp protease proteolytic subunit; Provisional; Region: PRK14512
521010002950	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
521010002951	oligomer interface [polypeptide binding]; other site
521010002952	active site residues [active]
521010002953	Domain of unknown function (DUF368); Region: DUF368; cl00893
521010002954	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from bacteria and archaea; Region: NTP-PPase_u4; cd11541
521010002955	putative metal binding site [ion binding]; other site
521010002956	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
521010002957	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
521010002958	Peptidase family M23; Region: Peptidase_M23; pfam01551
521010002959	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
521010002960	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
521010002961	active site
521010002962	phosphorylation site [posttranslational modification]
521010002963	intermolecular recognition site; other site
521010002964	dimerization interface [polypeptide binding]; other site
521010002965	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010002966	Walker A motif; other site
521010002967	ATP binding site [chemical binding]; other site
521010002968	Walker B motif; other site
521010002969	arginine finger; other site
521010002970	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
521010002971	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
521010002972	His Kinase A (phosphoacceptor) domain; Region: HisKA; smart00388
521010002973	dimer interface [polypeptide binding]; other site
521010002974	phosphorylation site [posttranslational modification]
521010002975	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
521010002976	ATP binding site [chemical binding]; other site
521010002977	G-X-G motif; other site
521010002978	DNA polymerase III subunit delta'; Validated; Region: PRK08485
521010002979	Uncharacterized membrane protein, required for colicin V production [General function prediction only]; Region: CvpA; COG1286
521010002980	Colicin V production protein; Region: Colicin_V; pfam02674
521010002981	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726
521010002982	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
521010002983	homodimer interface [polypeptide binding]; other site
521010002984	active site
521010002985	Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and...; Region: pyridoxal_pyridoxamine_kinase; cd01173
521010002986	dimer interface [polypeptide binding]; other site
521010002987	pyridoxal binding site [chemical binding]; other site
521010002988	ATP binding site [chemical binding]; other site
521010002989	UGMP family protein; Validated; Region: PRK09604
521010002990	tRNA threonylcarbamoyl adenosine modification protein YeaZ; Region: T6A_YeaZ; TIGR03725
521010002991	Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; Region: CE4_DAC2; cd10936
521010002992	NodB motif; other site
521010002993	putative active site [active]
521010002994	putative catalytic site [active]
521010002995	Zn binding site [ion binding]; other site
521010002996	RNA polymerase sigma factor RpoS; Region: rpoS_proteo; TIGR02394
521010002997	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
521010002998	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
521010002999	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
521010003000	DNA binding residues [nucleotide binding]
521010003001	Rod binding protein; Region: Rod-binding; cl01626
521010003002	flagellar basal body P-ring protein; Reviewed; Region: flgI; cl14622
521010003003	Flagellar basal-body P-ring protein [Cell motility and secretion]; Region: FlgI; COG1706
521010003004	SAF-like; Region: SAF_2; pfam13144
521010003005	flagellar basal body rod protein FlgG; Reviewed; Region: flgG; PRK12816
521010003006	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
521010003007	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
521010003008	Flagellar basal body rod protein [Cell motility and secretion]; Region: FlgG; COG4786
521010003009	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
521010003010	flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490
521010003011	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4731
521010003012	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
521010003013	active site
521010003014	ribosomal protein L21; Region: L21; TIGR00061
521010003015	Predicted ribosomal protein [Translation, ribosomal structure and biogenesis]; Region: COG2868
521010003016	50S ribosomal protein L27; Validated; Region: rpmA; PRK05435
521010003017	GTPase CgtA; Reviewed; Region: obgE; PRK12299
521010003018	GTP1/OBG; Region: GTP1_OBG; pfam01018
521010003019	Obg GTPase; Region: Obg; cd01898
521010003020	G1 box; other site
521010003021	GTP/Mg2+ binding site [chemical binding]; other site
521010003022	Switch I region; other site
521010003023	G2 box; other site
521010003024	G3 box; other site
521010003025	Switch II region; other site
521010003026	G4 box; other site
521010003027	G5 box; other site
521010003028	Nicotinamide/nicotinate mononucleotide adenylyltransferase; Region: NMNAT; cd02165
521010003029	nicotinate (nicotinamide) nucleotide adenylyltransferase; Region: TIGR00482
521010003030	active site
521010003031	(T/H)XGH motif; other site
521010003032	Transcriptional regulator [Transcription]; Region: LytR; COG1316
521010003033	LytR cell envelope-related transcriptional attenuator; Region: LytR_C; pfam13399
521010003034	Oligomerisation domain; Region: Oligomerisation; cl00519
521010003035	SpoVG; Region: SpoVG; cl00915
521010003036	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
521010003037	ribosomal protein L25, Ctc-form; Region: ctc_TL5; TIGR00731
521010003038	5S rRNA interface [nucleotide binding]; other site
521010003039	CTC domain interface [polypeptide binding]; other site
521010003040	L16 interface [polypeptide binding]; other site
521010003041	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
521010003042	putative active site [active]
521010003043	catalytic residue [active]
521010003044	tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]; Region: MesJ; COG0037
521010003045	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
521010003046	Ligand Binding Site [chemical binding]; other site
521010003047	FtsH Extracellular; Region: FtsH_ext; pfam06480
521010003048	ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241
521010003049	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010003050	Walker A motif; other site
521010003051	ATP binding site [chemical binding]; other site
521010003052	Walker B motif; other site
521010003053	arginine finger; other site
521010003054	Peptidase family M41; Region: Peptidase_M41; pfam01434
521010003055	Thymidine kinase [Nucleotide transport and metabolism]; Region: Tdk; COG1435
521010003056	thymidylate kinase; Region: DTMP_kinase; TIGR00041
521010003057	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
521010003058	TMP-binding site; other site
521010003059	ATP-binding site [chemical binding]; other site
521010003060	Family of unknown function (DUF490); Region: DUF490; pfam04357
521010003061	outer membrane protein assembly complex, YaeT protein; Region: OM_YaeT; TIGR03303
521010003062	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
521010003063	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
521010003064	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
521010003065	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
521010003066	Surface antigen; Region: Bac_surface_Ag; pfam01103
521010003067	Outer membrane protein (OmpH-like); Region: OmpH; smart00935
521010003068	DNA mismatch repair protein MutS; Provisional; Region: PRK05399
521010003069	MutS domain I; Region: MutS_I; pfam01624
521010003070	MutS domain II; Region: MutS_II; pfam05188
521010003071	MutS domain III; Region: MutS_III; pfam05192
521010003072	ATP-binding cassette domain of MutS1 homolog; Region: ABC_MutS1; cd03284
521010003073	Walker A/P-loop; other site
521010003074	ATP binding site [chemical binding]; other site
521010003075	Q-loop/lid; other site
521010003076	ABC transporter signature motif; other site
521010003077	Walker B; other site
521010003078	D-loop; other site
521010003079	H-loop/switch region; other site
521010003080	comF family protein; Region: comF; TIGR00201
521010003081	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
521010003082	active site
521010003083	Sm and related proteins; Region: Sm_like; cl00259
521010003084	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG0779
521010003085	heptamer interface [polypeptide binding]; other site
521010003086	Sm1 motif; other site
521010003087	hexamer interface [polypeptide binding]; other site
521010003088	RNA binding site [nucleotide binding]; other site
521010003089	Sm2 motif; other site
521010003090	transcription termination factor NusA; Region: NusA; TIGR01953
521010003091	NusA N-terminal domain; Region: NusA_N; pfam08529
521010003092	S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three...; Region: S1_NusA; cd04455
521010003093	RNA binding site [nucleotide binding]; other site
521010003094	homodimer interface [polypeptide binding]; other site
521010003095	NusA-like KH domain; Region: KH_5; pfam13184
521010003096	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
521010003097	G-X-X-G motif; other site
521010003098	translation initiation factor IF-2; Region: IF-2; TIGR00487
521010003099	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
521010003100	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
521010003101	G1 box; other site
521010003102	putative GEF interaction site [polypeptide binding]; other site
521010003103	GTP/Mg2+ binding site [chemical binding]; other site
521010003104	Switch I region; other site
521010003105	G2 box; other site
521010003106	G3 box; other site
521010003107	Switch II region; other site
521010003108	G4 box; other site
521010003109	G5 box; other site
521010003110	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
521010003111	Translation-initiation factor 2; Region: IF-2; pfam11987
521010003112	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
521010003113	ribosome-binding factor A; Region: rbfA; TIGR00082
521010003114	tRNA pseudouridine(55) synthase; Region: TruB; TIGR00431
521010003115	Pseudouridine synthase, Escherichia coli TruB like; Region: PseudoU_synth_EcTruB; cd02573
521010003116	RNA binding site [nucleotide binding]; other site
521010003117	active site
521010003118	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
521010003119	16S/18S rRNA binding site [nucleotide binding]; other site
521010003120	S13e-L30e interaction site [polypeptide binding]; other site
521010003121	25S rRNA binding site [nucleotide binding]; other site
521010003122	polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824
521010003123	Polyribonucleotide nucleotidyltransferase, repeat 1; Region: RNase_PH_PNPase_1; cd11363
521010003124	RNase E interface [polypeptide binding]; other site
521010003125	trimer interface [polypeptide binding]; other site
521010003126	Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726
521010003127	Polyribonucleotide nucleotidyltransferase, repeat 2; Region: RNase_PH_PNPase_2; cd11364
521010003128	RNase E interface [polypeptide binding]; other site
521010003129	trimer interface [polypeptide binding]; other site
521010003130	active site
521010003131	Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393
521010003132	putative nucleic acid binding region [nucleotide binding]; other site
521010003133	G-X-X-G motif; other site
521010003134	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
521010003135	RNA binding site [nucleotide binding]; other site
521010003136	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
521010003137	Predicted permeases [General function prediction only]; Region: COG0795; cl12074
521010003138	Predicted permeases [General function prediction only]; Region: COG0795; cl12074
521010003139	Predicted permeases [General function prediction only]; Region: COG0795
521010003140	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
521010003141	tRNA-guanine transglycosylase, queuosine-34-forming; Region: Q_tRNA_tgt; TIGR00430
521010003142	tRNA-guanine family transglycosylase; Region: tgt_general; TIGR00449
521010003143	integral membrane protein MviN; Region: mviN; TIGR01695
521010003144	MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_MurJ_like; cd13123
521010003145	FOG: HEAT repeat [Energy production and conversion]; Region: COG1413
521010003146	phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Region: coaBC_dfp; TIGR00521
521010003147	Flavoprotein; Region: Flavoprotein; pfam02441
521010003148	DNA / pantothenate metabolism flavoprotein; Region: DFP; pfam04127
521010003149	sodium/panthothenate symporter; Provisional; Region: panF; PRK09442
521010003150	Na binding site [ion binding]; other site
521010003151	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
521010003152	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
521010003153	active site
521010003154	UDP-N-acetylmuramate--alanine ligase; Region: murC; TIGR01082
521010003155	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
521010003156	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
521010003157	TIGR00255 family protein; Region: TIGR00255
521010003158	YicC-like family, N-terminal region; Region: YicC_N; pfam03755
521010003159	Domain of unknown function (DUF1732); Region: DUF1732; pfam08340
521010003160	Cytidylate kinase [Nucleotide transport and metabolism]; Region: Cmk; COG1102
521010003161	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
521010003162	CMP-binding site; other site
521010003163	The sites determining sugar specificity; other site
521010003164	DNA-directed RNA polymerase, subunit K/omega [Transcription]; Region: RpoZ; COG1758
521010003165	tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional; Region: miaA; PRK14729
521010003166	tRNA dimethylallyltransferase; Region: miaA; TIGR00174
521010003167	Predicted periplasmic protein (DUF2233); Region: DUF2233; pfam09992
521010003168	HrpA-like helicases [DNA replication, recombination, and repair]; Region: HrpA; COG1643
521010003169	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
521010003170	ATP binding site [chemical binding]; other site
521010003171	putative Mg++ binding site [ion binding]; other site
521010003172	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
521010003173	nucleotide binding region [chemical binding]; other site
521010003174	ATP-binding site [chemical binding]; other site
521010003175	Helicase associated domain (HA2); Region: HA2; pfam04408
521010003176	Oligonucleotide/oligosaccharide-binding (OB)-fold; Region: OB_NTP_bind; pfam07717
521010003177	Topoisomerase IA [DNA replication, recombination, and repair]; Region: TopA; COG0550
521010003178	TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I.   Type IA DNA topoisomerases remove (relax) negative supercoils in the...; Region: TOPRIM_TopoIA_TopoI; cd03363
521010003179	active site
521010003180	interdomain interaction site; other site
521010003181	putative metal-binding site [ion binding]; other site
521010003182	nucleotide binding site [chemical binding]; other site
521010003183	Bacterial DNA topoisomeraes I ATP-binding domain; Region: TOP1Bc; smart00436
521010003184	domain I; other site
521010003185	phosphate binding site [ion binding]; other site
521010003186	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
521010003187	domain III; other site
521010003188	nucleotide binding site [chemical binding]; other site
521010003189	DNA binding groove [nucleotide binding]
521010003190	catalytic site [active]
521010003191	domain II; other site
521010003192	domain IV; other site
521010003193	Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]; Region: COG1754
521010003194	DNA repair exonuclease [DNA replication, recombination, and repair]; Region: SbcD; COG0420
521010003195	Mre11 nuclease, N-terminal metallophosphatase domain; Region: MPP_Mre11_N; cd00840
521010003196	active site
521010003197	metal binding site [ion binding]; metal-binding site
521010003198	DNA binding site [nucleotide binding]
521010003199	ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: SbcC; COG0419
521010003200	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010003201	Walker A/P-loop; other site
521010003202	ATP binding site [chemical binding]; other site
521010003203	Q-loop/lid; other site
521010003204	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
521010003205	ABC transporter signature motif; other site
521010003206	Walker B; other site
521010003207	D-loop; other site
521010003208	H-loop/switch region; other site
521010003209	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
521010003210	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
521010003211	nucleotide binding site [chemical binding]; other site
521010003212	isoleucyl-tRNA synthetase; Region: ileS; TIGR00392
521010003213	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
521010003214	HIGH motif; other site
521010003215	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
521010003216	active site
521010003217	KMSKS motif; other site
521010003218	Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_ABEc; cd07961
521010003219	tRNA binding surface [nucleotide binding]; other site
521010003220	anticodon binding site; other site
521010003221	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010003222	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
521010003223	Walker A motif; other site
521010003224	ATP binding site [chemical binding]; other site
521010003225	Walker B motif; other site
521010003226	arginine finger; other site
521010003227	ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]; Region: clpA; COG0542
521010003228	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
521010003229	Walker A motif; other site
521010003230	ATP binding site [chemical binding]; other site
521010003231	Walker B motif; other site
521010003232	phosphoglucomutase-2-like protein; Provisional; Region: PTZ00150
521010003233	This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and...; Region: PGM2; cd05799
521010003234	active site
521010003235	substrate binding site [chemical binding]; other site
521010003236	metal binding site [ion binding]; metal-binding site
521010003237	excinuclease ABC subunit B; Provisional; Region: PRK05298
521010003238	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
521010003239	ATP binding site [chemical binding]; other site
521010003240	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
521010003241	nucleotide binding region [chemical binding]; other site
521010003242	ATP-binding site [chemical binding]; other site
521010003243	Ultra-violet resistance protein B; Region: UvrB; pfam12344
521010003244	UvrB/uvrC motif; Region: UVR; pfam02151
521010003245	excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349
521010003246	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
521010003247	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
521010003248	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
521010003249	Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]; Region: Imp; COG1452
521010003250	RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner; Region: RNase_H; cl14782
521010003251	RNA/DNA hybrid binding site [nucleotide binding]; other site
521010003252	active site
521010003253	arginine deiminase; Provisional; Region: PRK01388
521010003254	ornithine carbamoyltransferase; Provisional; Region: PRK04284
521010003255	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
521010003256	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
521010003257	Predicted membrane protein [Function unknown]; Region: COG1288
521010003258	C4-dicarboxylate anaerobic carrier; Region: DcuC; pfam03606
521010003259	Type II restriction enzyme, methylase subunits [Defense mechanisms]; Region: COG1002
521010003260	Putative plasmid partition protein; Region: Plasmid_parti; pfam01672
521010003261	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
521010003262	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010003263	P-loop; other site
521010003264	Magnesium ion binding site [ion binding]; other site
521010003265	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
521010003266	Magnesium ion binding site [ion binding]; other site
521010003267	Borrelia family of unknown function DUF226; Region: DUF226; pfam02890
521010003268	Borrelia ORF-A; Region: Borrelia_orfA; pfam02414
521010003269	Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cl00220
521010003270	catalytic triad [active]
521010003271	conserved cis-peptide bond; other site
521010003272	Borrelia burgdorferi virulent strain associated lipoprotein; Region: Borrelia_lipo_1; pfam05714