-- dump date 20240506_013409 -- class Genbank::Contig -- table contig_comment -- id comment NZ_CP006954.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP006954.1.REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC.REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYAREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracyREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitatREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensalREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not availableREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitatREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error correctedREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bpREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : KansasREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not availableREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not availableREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not availableREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not availableREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animalREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploidREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease PathogenREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen SequencingREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not availableREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long ReadREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurusREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error correctedREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp'REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long ReadREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 11 of 28REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 11 of 28 Pseudo Genes (incomplete) :: 21 of 28REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 11 of 28 Pseudo Genes (incomplete) :: 21 of 28 Pseudo Genes (internal stop) :: 6 of 28REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 11 of 28 Pseudo Genes (incomplete) :: 21 of 28 Pseudo Genes (internal stop) :: 6 of 28 Pseudo Genes (multiple problems) :: 7 of 28REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 11 of 28 Pseudo Genes (incomplete) :: 21 of 28 Pseudo Genes (internal stop) :: 6 of 28 Pseudo Genes (multiple problems) :: 7 of 28 CRISPR Arrays :: 3REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 11 of 28 Pseudo Genes (incomplete) :: 21 of 28 Pseudo Genes (internal stop) :: 6 of 28 Pseudo Genes (multiple problems) :: 7 of 28 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP006954.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria available from MARC. ##MIGS:3.0-Data-START## annot_source :: DIYA assembly :: Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1 biome :: livestock-associated habitat biotic_relationship :: commensal collection_date :: 10-May-2008 env_package :: Not available estimated_size :: 2500000 feature :: livestock-associated habitat finishing_strategy :: complete : 38X coverage : error corrected reads >= 6000 bp geo_loc_name :: United States : Kansas health_disease_stat :: Not available investigation_type :: bacteria_archaea isol_growth_condt :: Not available lat_lon :: Not available material :: Not available num_replicons :: 1 pathogenicity :: animal ploidy :: haploid project_name :: USMARC Bovine Respiratory Disease Pathogen Sequencing ref_biomaterial :: Not available seq_meth :: Pac Bio RS C2 Long Read specific_host :: Bos taurus ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: Celera v. 7.0 Genome Coverage :: 'complete : 38X coverage : error corrected reads >= 6000 bp' Sequencing Technology :: PacBio C2 Long Read ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/24/2024 00:58:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,159 CDSs (total) :: 2,079 Genes (coding) :: 2,051 CDSs (with protein) :: 2,051 Genes (RNA) :: 80 rRNAs :: 7, 6, 6 (5S, 16S, 23S) complete rRNAs :: 7, 6, 6 (5S, 16S, 23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 28 CDSs (without protein) :: 28 Pseudo Genes (ambiguous residues) :: 0 of 28 Pseudo Genes (frameshifted) :: 11 of 28 Pseudo Genes (incomplete) :: 21 of 28 Pseudo Genes (internal stop) :: 6 of 28 Pseudo Genes (multiple problems) :: 7 of 28 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length.