-- dump date 20140619_000847 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 360095000001 SEQ_END SEQ_END NC_008783.1 1445021 1445021 DR NC_008783.1; contig end 1445021..1445021 Bartonella bacilliformis KC583 YP_988340.1 CDS BARBAKC583_0001 NC_008783.1 213 986 D identified by match to protein family HMM PF01027; hypothetical protein 213..986 Bartonella bacilliformis KC583 4685072 YP_988341.1 CDS BARBAKC583_0003 NC_008783.1 1105 2004 D identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 1105..2004 Bartonella bacilliformis KC583 4684485 YP_988342.1 CDS polA NC_008783.1 1970 4876 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(1970..4876) Bartonella bacilliformis KC583 4684113 YP_988343.1 CDS dnaQ NC_008783.1 5177 5881 R identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III, epsilon subunit complement(5177..5881) Bartonella bacilliformis KC583 4683943 YP_988344.1 CDS coaE NC_008783.1 5886 6488 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(5886..6488) Bartonella bacilliformis KC583 4684309 YP_988345.1 CDS aroE NC_008783.1 6485 7360 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(6485..7360) Bartonella bacilliformis KC583 4684935 YP_988346.1 CDS maf1 NC_008783.1 7353 7949 R identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172; septum formation protein Maf complement(7353..7949) Bartonella bacilliformis KC583 4684894 YP_988347.1 CDS BARBAKC583_0008 NC_008783.1 7946 8785 R identified by similarity to SP:Q92TF2; match to protein family HMM PF03618; hypothetical protein complement(7946..8785) Bartonella bacilliformis KC583 4683852 YP_988348.1 CDS rho NC_008783.1 9401 10666 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 9401..10666 Bartonella bacilliformis KC583 4685051 YP_988349.1 CDS trmE NC_008783.1 10700 12007 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 10700..12007 Bartonella bacilliformis KC583 4684249 YP_988350.1 CDS gidA NC_008783.1 12116 13984 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 12116..13984 Bartonella bacilliformis KC583 4684542 YP_988351.1 CDS gidB NC_008783.1 13984 14631 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 13984..14631 Bartonella bacilliformis KC583 4683881 YP_988352.1 CDS parA NC_008783.1 14637 15434 D identified by similarity to SP:O05189; match to protein family HMM PF01656; chromosome partitioning protein ParA 14637..15434 Bartonella bacilliformis KC583 4684369 YP_988353.1 CDS parB NC_008783.1 15486 16397 D identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180; chromosome partitioning protein ParB 15486..16397 Bartonella bacilliformis KC583 4684144 YP_988354.1 CDS BARBAKC583_0015 NC_008783.1 16398 16931 R hypothetical protein complement(16398..16931) Bartonella bacilliformis KC583 4684416 YP_988355.1 CDS ispZ NC_008783.1 17303 17968 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(17303..17968) Bartonella bacilliformis KC583 4684488 YP_988356.1 CDS ftsY NC_008783.1 17965 19128 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(17965..19128) Bartonella bacilliformis KC583 4684099 YP_988357.1 CDS BARBAKC583_0018 NC_008783.1 19143 20426 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB family tRNA modification protein complement(19143..20426) Bartonella bacilliformis KC583 4684557 YP_988358.1 CDS dapF NC_008783.1 20426 21274 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(20426..21274) Bartonella bacilliformis KC583 4684357 YP_988359.1 CDS BARBAKC583_0020 NC_008783.1 21533 22066 D hypothetical protein 21533..22066 Bartonella bacilliformis KC583 4684034 YP_988360.1 CDS BARBAKC583_0021 NC_008783.1 22159 23370 D identified by match to protein family HMM PF03969; AFG1 family ATPase 22159..23370 Bartonella bacilliformis KC583 4685045 YP_988361.1 CDS mdh NC_008783.1 23638 24603 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 23638..24603 Bartonella bacilliformis KC583 4684498 YP_988362.1 CDS sucC NC_008783.1 24684 25880 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 24684..25880 Bartonella bacilliformis KC583 4685108 YP_988363.1 CDS sucD NC_008783.1 25884 26786 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 25884..26786 Bartonella bacilliformis KC583 4683846 YP_988364.1 CDS sucA NC_008783.1 26939 29938 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 26939..29938 Bartonella bacilliformis KC583 4683921 YP_988365.1 CDS sucB NC_008783.1 29972 31177 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 29972..31177 Bartonella bacilliformis KC583 4683971 YP_988366.1 CDS lpdA1 NC_008783.1 31210 32616 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 31210..32616 Bartonella bacilliformis KC583 4683877 YP_988367.1 CDS lys1 NC_008783.1 32755 33993 R identified by match to protein family HMM PF03435; saccharopine dehydrogenase complement(32755..33993) Bartonella bacilliformis KC583 4684214 YP_988368.1 CDS nspC NC_008783.1 34049 35146 R identified by similarity to GB:BAA06561.1; match to protein family HMM PF00278; carboxynorspermidine decarboxylase complement(34049..35146) Bartonella bacilliformis KC583 4685129 YP_988369.1 CDS phaAB NC_008783.1 35897 38818 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 35897..38818 Bartonella bacilliformis KC583 4685090 YP_988370.1 CDS phaC NC_008783.1 38818 39156 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 38818..39156 Bartonella bacilliformis KC583 4684351 YP_988371.1 CDS phaD NC_008783.1 39159 40781 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 39159..40781 Bartonella bacilliformis KC583 4684906 YP_988372.1 CDS phaE NC_008783.1 40778 41263 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 40778..41263 Bartonella bacilliformis KC583 4683803 YP_988373.1 CDS phaF NC_008783.1 41260 41541 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 41260..41541 Bartonella bacilliformis KC583 4683815 YP_988374.1 CDS phaG NC_008783.1 41538 41930 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G 41538..41930 Bartonella bacilliformis KC583 4684436 YP_988375.1 CDS BARBAKC583_0036 NC_008783.1 41962 42354 R identified by similarity to RF:YP_032843.1; hypothetical protein complement(41962..42354) Bartonella bacilliformis KC583 4684571 YP_988376.1 CDS aroB NC_008783.1 42771 43904 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(42771..43904) Bartonella bacilliformis KC583 4684718 YP_988377.1 CDS aroK NC_008783.1 43873 44418 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(43873..44418) Bartonella bacilliformis KC583 4685082 YP_988378.1 CDS xerD NC_008783.1 44758 45696 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD 44758..45696 Bartonella bacilliformis KC583 4684112 YP_988379.1 CDS accA NC_008783.1 45772 46728 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 45772..46728 Bartonella bacilliformis KC583 4684444 YP_988380.1 CDS BARBAKC583_0041 NC_008783.1 46764 47507 D identified by match to protein family HMM PF06104; putative lipoprotein 46764..47507 Bartonella bacilliformis KC583 4684122 YP_988381.1 CDS BARBAKC583_0042 NC_008783.1 48142 49230 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase family protein complement(48142..49230) Bartonella bacilliformis KC583 4684169 YP_988382.1 CDS BARBAKC583_0043 NC_008783.1 49321 50127 R identified by match to protein family HMM PF01553; acyltransferase family protein complement(49321..50127) Bartonella bacilliformis KC583 4684359 YP_988383.1 CDS BARBAKC583_0044 NC_008783.1 50162 50293 D hypothetical protein 50162..50293 Bartonella bacilliformis KC583 4684476 YP_988384.1 CDS BARBAKC583_0045 NC_008783.1 50598 50780 D hypothetical protein 50598..50780 Bartonella bacilliformis KC583 4684747 YP_988385.1 CDS BARBAKC583_0047 NC_008783.1 51054 52037 D identified by match to protein family HMM PF04392; ABC transporter, periplasmic substrate-binding protein 51054..52037 Bartonella bacilliformis KC583 4683979 YP_988386.1 CDS BARBAKC583_0048 NC_008783.1 52089 52982 D identified by match to protein family HMM PF02653; ABC transporter, permease protein 52089..52982 Bartonella bacilliformis KC583 4684686 YP_988387.1 CDS BARBAKC583_0049 NC_008783.1 52979 53773 D identified by match to protein family HMM PF00005; ABC transporter, ATP-binding protein 52979..53773 Bartonella bacilliformis KC583 4684045 YP_988388.1 CDS holA NC_008783.1 53777 54820 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 53777..54820 Bartonella bacilliformis KC583 4684271 YP_988389.1 CDS BARBAKC583_0051 NC_008783.1 54956 55813 D identified by match to protein family HMM PF03631; YihY family protein 54956..55813 Bartonella bacilliformis KC583 4684530 YP_988390.1 CDS BARBAKC583_0052 NC_008783.1 55832 56329 D identified by match to protein family HMM PF02639; hypothetical protein 55832..56329 Bartonella bacilliformis KC583 4683966 YP_988391.1 CDS BARBAKC583_0053 NC_008783.1 56331 57029 R identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein complement(56331..57029) Bartonella bacilliformis KC583 4684306 YP_988392.1 CDS argH NC_008783.1 57063 58463 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 57063..58463 Bartonella bacilliformis KC583 4684917 YP_988393.1 CDS BARBAKC583_0055 NC_008783.1 58522 58701 D identified by similarity to RF:NP_539003.1; putative lipoprotein 58522..58701 Bartonella bacilliformis KC583 4684710 YP_988394.1 CDS lysA NC_008783.1 58710 59984 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 58710..59984 Bartonella bacilliformis KC583 4684111 YP_988395.1 CDS BARBAKC583_0057 NC_008783.1 60099 62516 D identified by match to protein family HMM TIGR02302; hypothetical protein 60099..62516 Bartonella bacilliformis KC583 4684942 YP_988396.1 CDS BARBAKC583_0058 NC_008783.1 62798 63532 D identified by match to protein family HMM PF08241; putative SAM-dependent methyltransferase protein 62798..63532 Bartonella bacilliformis KC583 4684931 YP_988397.1 CDS BARBAKC583_0059 NC_008783.1 63674 64360 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(63674..64360) Bartonella bacilliformis KC583 4684083 YP_988398.1 CDS BARBAKC583_0061 NC_008783.1 64391 64999 D hypothetical protein 64391..64999 Bartonella bacilliformis KC583 4684926 YP_988399.1 CDS BARBAKC583_0060 NC_008783.1 64996 65424 R identified by similarity to RF:YP_222541.1; match to protein family HMM PF01878; hypothetical protein complement(64996..65424) Bartonella bacilliformis KC583 4684006 YP_988400.1 CDS BARBAKC583_0062 NC_008783.1 65516 66610 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(65516..66610) Bartonella bacilliformis KC583 4684442 YP_988401.1 CDS BARBAKC583_0063 NC_008783.1 66916 68352 D hypothetical protein 66916..68352 Bartonella bacilliformis KC583 4684808 YP_988402.1 CDS BARBAKC583_0064 NC_008783.1 68364 69959 D identified by similarity to RF:YP_032822.1; match to protein family HMM PF07219; hypothetical protein 68364..69959 Bartonella bacilliformis KC583 4685070 YP_988403.1 CDS BARBAKC583_0065 NC_008783.1 70042 70809 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 70042..70809 Bartonella bacilliformis KC583 4684387 YP_988404.1 CDS BARBAKC583_0066 NC_008783.1 71085 75794 R identified by match to protein family HMM PF05088; glutamate dehydrogenase, NAD-specific complement(71085..75794) Bartonella bacilliformis KC583 4684379 YP_988405.1 CDS BARBAKC583_0067 NC_008783.1 76074 76730 D identified by similarity to SP:P42737; match to protein family HMM PF00484; carbonic anhydrase 76074..76730 Bartonella bacilliformis KC583 4684155 YP_988406.1 CDS ffh NC_008783.1 76976 78523 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 76976..78523 Bartonella bacilliformis KC583 4684280 YP_988407.1 CDS rpsP NC_008783.1 78953 79315 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 78953..79315 Bartonella bacilliformis KC583 4683886 YP_988408.1 CDS BARBAKC583_0070 NC_008783.1 79464 79670 R identified by similarity to RF:YP_034294.1; match to protein family HMM PF07896; hypothetical protein complement(79464..79670) Bartonella bacilliformis KC583 4684080 YP_988409.1 CDS BARBAKC583_0071 NC_008783.1 79755 80786 D putative metalloprotease; heat shock protein HtpX 79755..80786 Bartonella bacilliformis KC583 4684473 YP_988410.1 CDS BARBAKC583_0072 NC_008783.1 80897 82267 D identified by match to protein family HMM PF01029; match to protein family HMM PF01189; putative ribosomal RNA small subunit methyltransferase B 80897..82267 Bartonella bacilliformis KC583 4684257 YP_988411.1 CDS BARBAKC583_0073 NC_008783.1 82335 84044 D identified by match to protein family HMM PF07940; heparinase II/III-like family protein 82335..84044 Bartonella bacilliformis KC583 4684555 YP_988412.1 CDS purH NC_008783.1 84215 85831 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 84215..85831 Bartonella bacilliformis KC583 4684296 YP_988413.1 CDS BARBAKC583_0075 NC_008783.1 85996 86148 D identified by match to protein family HMM PF06568; hypothetical protein 85996..86148 Bartonella bacilliformis KC583 4684595 YP_988414.1 CDS BARBAKC583_0076 NC_008783.1 86488 87294 R identified by match to protein family HMM PF02104; SurF1 family protein complement(86488..87294) Bartonella bacilliformis KC583 4684381 YP_988415.1 CDS rpmB NC_008783.1 87569 87865 D required for 70S ribosome assembly; 50S ribosomal protein L28 87569..87865 Bartonella bacilliformis KC583 4684517 YP_988416.1 CDS BARBAKC583_0078 NC_008783.1 87990 88652 D identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 87990..88652 Bartonella bacilliformis KC583 4684648 YP_988417.1 CDS cobT NC_008783.1 88851 90746 R identified by match to protein family HMM PF06213; match to protein family HMM TIGR01651; cobaltochelatase, CobT subunit complement(88851..90746) Bartonella bacilliformis KC583 4684273 YP_988418.1 CDS cobS NC_008783.1 90761 91747 R identified by match to protein family HMM PF07728; match to protein family HMM TIGR01650; cobaltochelatase, CobS subunit complement(90761..91747) Bartonella bacilliformis KC583 4684011 YP_988419.1 CDS BARBAKC583_0081 NC_008783.1 92015 92635 R identified by match to protein family HMM PF00226; DnaJ domain-containing protein complement(92015..92635) Bartonella bacilliformis KC583 4684187 YP_988420.1 CDS BARBAKC583_0082 NC_008783.1 92751 93029 D identified by match to protein family HMM PF01722; BolA family protein 92751..93029 Bartonella bacilliformis KC583 4684050 YP_988421.1 CDS xerC NC_008783.1 93072 94040 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(93072..94040) Bartonella bacilliformis KC583 4683802 YP_988422.1 CDS BARBAKC583_0084 NC_008783.1 94043 94864 R identified by match to protein family HMM PF07277; SapC family protein complement(94043..94864) Bartonella bacilliformis KC583 4684691 YP_988423.1 CDS rimM NC_008783.1 94994 95569 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 94994..95569 Bartonella bacilliformis KC583 4684403 YP_988424.1 CDS trmD NC_008783.1 95619 96317 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 95619..96317 Bartonella bacilliformis KC583 4684386 YP_988425.1 CDS rplS NC_008783.1 96523 96963 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 96523..96963 Bartonella bacilliformis KC583 4683915 YP_988426.1 CDS sdhC NC_008783.1 97559 97960 D identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase, cytochrome b556 subunit 97559..97960 Bartonella bacilliformis KC583 4685100 YP_988427.1 CDS sdhD NC_008783.1 97979 98365 D identified by similarity to GB:AAC17941.1; match to protein family HMM PF01127; match to protein family HMM TIGR02968; succinate dehydrogenase, hydrophobic membrane anchor protein 97979..98365 Bartonella bacilliformis KC583 4684021 YP_988428.1 CDS sdhA NC_008783.1 98370 100217 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 98370..100217 Bartonella bacilliformis KC583 4684853 YP_988429.1 CDS sdhB NC_008783.1 100233 101012 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 100233..101012 Bartonella bacilliformis KC583 4684487 YP_988430.1 CDS BARBAKC583_0092 NC_008783.1 101601 102848 R identified by match to protein family HMM PF01494; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(101601..102848) Bartonella bacilliformis KC583 4684640 YP_988431.1 CDS BARBAKC583_0093 NC_008783.1 103019 105439 D identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 103019..105439 Bartonella bacilliformis KC583 4684415 YP_988432.1 CDS BARBAKC583_0094 NC_008783.1 105736 106368 D identified by match to protein family HMM PF03548; LolA family protein 105736..106368 Bartonella bacilliformis KC583 4683904 YP_988433.1 CDS xth1 NC_008783.1 106374 107189 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633; exodeoxyribonuclease III 106374..107189 Bartonella bacilliformis KC583 4684991 YP_988434.1 CDS BARBAKC583_0096 NC_008783.1 107648 108847 D identified by similarity to GB:AAV85981.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730; putative macrolide-specific efflux protein MacA 107648..108847 Bartonella bacilliformis KC583 4684097 YP_988435.1 CDS macB NC_008783.1 108876 110882 D identified by similarity to SP:P75831; match to protein family HMM PF00005; match to protein family HMM PF02687; macrolide-specific ABC-type efflux carrier MacB 108876..110882 Bartonella bacilliformis KC583 4683925 YP_988436.1 CDS BARBAKC583_0098 NC_008783.1 111411 112019 R identified by match to protein family HMM PF02698; hypothetical protein complement(111411..112019) Bartonella bacilliformis KC583 4684936 YP_988437.1 CDS BARBAKC583_0099 NC_008783.1 112169 113143 R identified by similarity to SP:P44872; FtsX family protein complement(112169..113143) Bartonella bacilliformis KC583 4684382 YP_988438.1 CDS ftsE NC_008783.1 113136 113795 R identified by similarity to GB:AAK20881.1; match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE complement(113136..113795) Bartonella bacilliformis KC583 4684526 YP_988439.1 CDS acsA NC_008783.1 113949 115907 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(113949..115907) Bartonella bacilliformis KC583 4684414 YP_988440.1 CDS BARBAKC583_0102 NC_008783.1 116070 116750 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(116070..116750) Bartonella bacilliformis KC583 4684720 YP_988441.1 CDS BARBAKC583_0103 NC_008783.1 116767 116898 R hypothetical protein complement(116767..116898) Bartonella bacilliformis KC583 4684186 YP_988442.1 CDS leuS NC_008783.1 117102 119729 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 117102..119729 Bartonella bacilliformis KC583 4684393 YP_988443.1 CDS BARBAKC583_0105 NC_008783.1 119758 120294 D hypothetical protein 119758..120294 Bartonella bacilliformis KC583 4684745 YP_988444.1 CDS BARBAKC583_0106 NC_008783.1 120668 121321 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(120668..121321) Bartonella bacilliformis KC583 4684100 YP_988445.1 CDS BARBAKC583_0107 NC_008783.1 121399 121563 D hypothetical protein 121399..121563 Bartonella bacilliformis KC583 4683969 YP_988446.1 CDS priA NC_008783.1 121855 124092 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 121855..124092 Bartonella bacilliformis KC583 4685020 YP_988447.1 CDS BARBAKC583_0109 NC_008783.1 124190 124855 D hypothetical protein 124190..124855 Bartonella bacilliformis KC583 4684768 YP_988448.1 CDS BARBAKC583_0110 NC_008783.1 124862 125056 D hypothetical protein 124862..125056 Bartonella bacilliformis KC583 4684880 YP_988449.1 CDS atpH NC_008783.1 125149 125733 D identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1, delta subunit 125149..125733 Bartonella bacilliformis KC583 4684725 YP_988450.1 CDS atpA NC_008783.1 125733 127268 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 125733..127268 Bartonella bacilliformis KC583 4684449 YP_988451.1 CDS atpG NC_008783.1 127285 128193 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 127285..128193 Bartonella bacilliformis KC583 4684822 YP_988452.1 CDS atpD NC_008783.1 128216 129829 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 128216..129829 Bartonella bacilliformis KC583 4684817 YP_988453.1 CDS atpC NC_008783.1 129877 130293 D identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1, epsilon subunit 129877..130293 Bartonella bacilliformis KC583 4684216 YP_988454.1 CDS BARBAKC583_0116 NC_008783.1 130318 131937 D identified by match to protein family HMM PF07690; major facilitator transporter 130318..131937 Bartonella bacilliformis KC583 4684367 YP_988455.1 CDS BARBAKC583_0117 NC_008783.1 131954 132955 D identified by match to protein family HMM PF00529; MFP family transporter 131954..132955 Bartonella bacilliformis KC583 4684319 YP_988456.1 CDS BARBAKC583_0118 NC_008783.1 133242 133370 R hypothetical protein complement(133242..133370) Bartonella bacilliformis KC583 4684950 YP_988457.1 CDS ispG NC_008783.1 133498 134754 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 133498..134754 Bartonella bacilliformis KC583 4683818 YP_988458.1 CDS BARBAKC583_0120 NC_008783.1 135152 136054 R identified by match to protein family HMM PF00348; polyprenyl synthetase complement(135152..136054) Bartonella bacilliformis KC583 4684524 YP_988459.1 CDS mtgA NC_008783.1 136133 136849 D identified by match to protein family HMM PF00912; match to protein family HMM TIGR02070; monofunctional biosynthetic peptidoglycan transglycosylase 136133..136849 Bartonella bacilliformis KC583 4684490 YP_988460.1 CDS rpmF NC_008783.1 137075 137260 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 137075..137260 Bartonella bacilliformis KC583 4684141 YP_988461.1 CDS BARBAKC583_0123 NC_008783.1 137770 138348 R identified by match to protein family HMM PF02559; CarD family transcriptional regulator complement(137770..138348) Bartonella bacilliformis KC583 4685117 YP_988462.1 CDS fdxA NC_008783.1 138644 138982 R identified by similarity to GB:AAA85787.1; match to protein family HMM PF00037; ferredoxin complement(138644..138982) Bartonella bacilliformis KC583 4684635 YP_988463.1 CDS BARBAKC583_0125 NC_008783.1 139004 140632 R identified by similarity to GB:CAA90562.1; MgpS complement(139004..140632) Bartonella bacilliformis KC583 4684575 YP_988464.1 CDS rpoH2 NC_008783.1 141073 141984 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production; RNA polymerase factor sigma-32 141073..141984 Bartonella bacilliformis KC583 4684799 YP_988465.1 CDS BARBAKC583_0127 NC_008783.1 142085 143500 R identified by match to protein family HMM PF01435; M48 family peptidase complement(142085..143500) Bartonella bacilliformis KC583 4684003 YP_988466.1 CDS thiN NC_008783.1 143768 144403 D identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase 143768..144403 Bartonella bacilliformis KC583 4684908 YP_988467.1 CDS BARBAKC583_0129 NC_008783.1 144855 145235 D putative lipoprotein 144855..145235 Bartonella bacilliformis KC583 4684332 YP_988468.1 CDS BARBAKC583_0131 NC_008783.1 145305 147134 D identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter, ATP-binding protein 145305..147134 Bartonella bacilliformis KC583 4683841 YP_988469.1 CDS BARBAKC583_0130 NC_008783.1 147131 147388 R identified by similarity to SP:Q8YIZ8; hypothetical protein complement(147131..147388) Bartonella bacilliformis KC583 4684109 YP_988470.1 CDS BARBAKC583_0132 NC_008783.1 147458 147592 D hypothetical protein 147458..147592 Bartonella bacilliformis KC583 4684136 YP_988471.1 CDS BARBAKC583_0133 NC_008783.1 147667 147861 D hypothetical protein 147667..147861 Bartonella bacilliformis KC583 4684467 YP_988472.1 CDS BARBAKC583_0134 NC_008783.1 147893 148258 D identified by match to protein family HMM PF06282; hypothetical protein 147893..148258 Bartonella bacilliformis KC583 4684974 YP_988473.1 CDS BARBAKC583_0135 NC_008783.1 148633 149016 R identified by match to protein family HMM PF05164; hypothetical protein complement(148633..149016) Bartonella bacilliformis KC583 4684243 YP_988474.1 CDS BARBAKC583_0136 NC_008783.1 149030 149347 R hypothetical protein complement(149030..149347) Bartonella bacilliformis KC583 4684551 YP_988475.1 CDS tkt NC_008783.1 149603 151603 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 149603..151603 Bartonella bacilliformis KC583 4684398 YP_988476.1 CDS gap NC_008783.1 151605 152612 D identified by similarity to SP:P51009; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 151605..152612 Bartonella bacilliformis KC583 4684545 YP_988477.1 CDS BARBAKC583_0139 NC_008783.1 152695 152808 D hypothetical protein 152695..152808 Bartonella bacilliformis KC583 4684732 YP_988478.1 CDS pgk NC_008783.1 152911 154113 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 152911..154113 Bartonella bacilliformis KC583 4684315 YP_988479.1 CDS fbaB NC_008783.1 154252 155280 D identified by match to protein family HMM PF00274; fructose-bisphosphate aldolase, class I 154252..155280 Bartonella bacilliformis KC583 4684336 YP_988480.1 CDS BARBAKC583_0142 NC_008783.1 155412 155525 R hypothetical protein complement(155412..155525) Bartonella bacilliformis KC583 4684860 YP_988481.1 CDS BARBAKC583_0143 NC_008783.1 155866 155991 D hypothetical protein 155866..155991 Bartonella bacilliformis KC583 4684224 YP_988482.1 CDS tolB NC_008783.1 156268 157596 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(156268..157596) Bartonella bacilliformis KC583 4685132 YP_988483.1 CDS BARBAKC583_0145 NC_008783.1 157638 159131 R TolA domain-containing protein complement(157638..159131) Bartonella bacilliformis KC583 4683819 YP_988484.1 CDS tolR NC_008783.1 159281 159733 R identified by match to protein family HMM PF02472; protein TolR complement(159281..159733) Bartonella bacilliformis KC583 4684832 YP_988485.1 CDS tolQ NC_008783.1 159746 160453 R identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796; protein TolQ complement(159746..160453) Bartonella bacilliformis KC583 4684910 YP_988486.1 CDS ybgC NC_008783.1 160943 161383 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; tol-pal system-associated acyl-CoA thioesterase complement(160943..161383) Bartonella bacilliformis KC583 4684145 YP_988487.1 CDS ruvB NC_008783.1 161376 162485 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(161376..162485) Bartonella bacilliformis KC583 4684774 YP_988488.1 CDS ruvA NC_008783.1 162493 163146 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(162493..163146) Bartonella bacilliformis KC583 4683890 YP_988489.1 CDS ruvC NC_008783.1 163151 163654 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(163151..163654) Bartonella bacilliformis KC583 4684450 YP_988490.1 CDS BARBAKC583_0152 NC_008783.1 163666 163800 D hypothetical protein 163666..163800 Bartonella bacilliformis KC583 4683947 YP_988491.1 CDS BARBAKC583_0153 NC_008783.1 164316 164834 R hypothetical protein complement(164316..164834) Bartonella bacilliformis KC583 4684849 YP_988492.1 CDS BARBAKC583_0154 NC_008783.1 165212 166318 R hypothetical protein complement(165212..166318) Bartonella bacilliformis KC583 4685156 YP_988493.1 CDS BARBAKC583_0155 NC_008783.1 166422 167099 D catalyzes the formation of thiamine monophosphate from 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate and 4-methyl-5-(2-phosphono-oxyethyl)-thiazole; thiamine-phosphate pyrophosphorylase 166422..167099 Bartonella bacilliformis KC583 4684794 YP_988494.1 CDS BARBAKC583_0156 NC_008783.1 167102 168199 D identified by match to protein family HMM PF08238; hypothetical protein 167102..168199 Bartonella bacilliformis KC583 4684593 YP_988495.1 CDS BARBAKC583_0157 NC_008783.1 168444 168557 D hypothetical protein 168444..168557 Bartonella bacilliformis KC583 4684726 YP_988496.1 CDS efp NC_008783.1 168871 169443 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 168871..169443 Bartonella bacilliformis KC583 4684020 YP_988497.1 CDS BARBAKC583_0159 NC_008783.1 169447 170238 D identified by match to protein family HMM PF00459; inositol monophosphatase family protein 169447..170238 Bartonella bacilliformis KC583 4684457 YP_988498.1 CDS BARBAKC583_0160 NC_008783.1 170500 172320 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter, permease/ATP-binding protein complement(170500..172320) Bartonella bacilliformis KC583 4684934 YP_988499.1 CDS rpmE NC_008783.1 172494 172715 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 172494..172715 Bartonella bacilliformis KC583 4684407 YP_988500.1 CDS BARBAKC583_0162 NC_008783.1 173006 173119 R hypothetical protein complement(173006..173119) Bartonella bacilliformis KC583 4684959 YP_988501.1 CDS BARBAKC583_0163 NC_008783.1 173273 174019 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(173273..174019) Bartonella bacilliformis KC583 4684845 YP_988502.1 CDS BARBAKC583_0164 NC_008783.1 174562 175263 D identified by match to protein family HMM PF06242; hypothetical protein 174562..175263 Bartonella bacilliformis KC583 4684798 YP_988503.1 CDS pal NC_008783.1 175581 176105 D identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated lipoprotein 175581..176105 Bartonella bacilliformis KC583 4684183 YP_988504.1 CDS BARBAKC583_0166 NC_008783.1 176115 176243 R hypothetical protein complement(176115..176243) Bartonella bacilliformis KC583 4685067 YP_988505.1 CDS tilS NC_008783.1 177161 179143 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase 177161..179143 Bartonella bacilliformis KC583 4683820 YP_988506.1 CDS hflB NC_008783.1 179267 181561 D identified by similarity to GB:CAB51029.1; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metallopeptidase HflB 179267..181561 Bartonella bacilliformis KC583 4684131 YP_988507.1 CDS BARBAKC583_0169 NC_008783.1 181883 182002 D hypothetical protein 181883..182002 Bartonella bacilliformis KC583 4684996 YP_988508.1 CDS BARBAKC583_0170 NC_008783.1 182173 182298 D hypothetical protein 182173..182298 Bartonella bacilliformis KC583 4685063 YP_988509.1 CDS glmM NC_008783.1 182309 183661 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 182309..183661 Bartonella bacilliformis KC583 4683927 YP_988510.1 CDS BARBAKC583_0172 NC_008783.1 184140 184478 D hypothetical protein 184140..184478 Bartonella bacilliformis KC583 4683916 YP_988511.1 CDS BARBAKC583_0173 NC_008783.1 184498 185469 D identified by similarity to SP:P0ABU7; match to protein family HMM PF01618; putative tonB-system energizer ExbB 184498..185469 Bartonella bacilliformis KC583 4685000 YP_988512.1 CDS exbD NC_008783.1 185469 185927 D identified by similarity to SP:P0ABV2; match to protein family HMM PF02472; TonB system transport protein ExbD 185469..185927 Bartonella bacilliformis KC583 4684463 YP_988513.1 CDS BARBAKC583_0175 NC_008783.1 186058 186252 D hypothetical protein 186058..186252 Bartonella bacilliformis KC583 4684988 YP_988514.1 CDS BARBAKC583_0176 NC_008783.1 186417 186563 D hypothetical protein 186417..186563 Bartonella bacilliformis KC583 4683999 YP_988515.1 CDS BARBAKC583_0177 NC_008783.1 186682 186813 D hypothetical protein 186682..186813 Bartonella bacilliformis KC583 4684523 YP_988516.1 CDS dut NC_008783.1 187140 187673 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(187140..187673) Bartonella bacilliformis KC583 4683934 YP_988517.1 CDS BARBAKC583_0179 NC_008783.1 188468 188581 D hypothetical protein 188468..188581 Bartonella bacilliformis KC583 4684812 YP_988518.1 CDS BARBAKC583_0180 NC_008783.1 188775 189578 R identified by match to protein family HMM PF01988; hypothetical protein complement(188775..189578) Bartonella bacilliformis KC583 4685005 YP_988519.1 CDS BARBAKC583_0181 NC_008783.1 189905 190024 D hypothetical protein 189905..190024 Bartonella bacilliformis KC583 4684130 YP_988520.1 CDS BARBAKC583_0182 NC_008783.1 190035 190607 R identified by similarity to SP:Q7MJN7; DsbB domain-containing protein complement(190035..190607) Bartonella bacilliformis KC583 4684290 YP_988521.1 CDS BARBAKC583_0183 NC_008783.1 190620 191240 R hypothetical protein complement(190620..191240) Bartonella bacilliformis KC583 4684887 YP_988522.1 CDS BARBAKC583_0185 NC_008783.1 192709 192930 R hypothetical protein complement(192709..192930) Bartonella bacilliformis KC583 4684173 YP_988523.1 CDS BARBAKC583_0186 NC_008783.1 192958 193614 R hypothetical protein complement(192958..193614) Bartonella bacilliformis KC583 4684562 YP_988524.1 CDS BARBAKC583_0187 NC_008783.1 193655 196021 R identified by match to protein family HMM PF01751; putative DNA primase/helicase complement(193655..196021) Bartonella bacilliformis KC583 4684179 YP_988525.1 CDS BARBAKC583_0189 NC_008783.1 196703 196822 D hypothetical protein 196703..196822 Bartonella bacilliformis KC583 4684439 YP_988526.1 CDS BARBAKC583_0188 NC_008783.1 196797 197813 R hypothetical protein complement(196797..197813) Bartonella bacilliformis KC583 4685136 YP_988527.1 CDS BARBAKC583_0190 NC_008783.1 197896 198225 D hypothetical protein 197896..198225 Bartonella bacilliformis KC583 4684077 YP_988528.1 CDS BARBAKC583_0191 NC_008783.1 198315 198440 D hypothetical protein 198315..198440 Bartonella bacilliformis KC583 4684041 YP_988529.1 CDS BARBAKC583_0192 NC_008783.1 198720 199034 D hypothetical protein 198720..199034 Bartonella bacilliformis KC583 4684642 YP_988530.1 CDS BARBAKC583_0193 NC_008783.1 199345 199758 D identified by similarity to RF:YP_032688.1; hypothetical protein 199345..199758 Bartonella bacilliformis KC583 4684751 YP_988531.1 CDS BARBAKC583_0194 NC_008783.1 199764 199952 D identified by similarity to RF:YP_032687.1; hypothetical protein 199764..199952 Bartonella bacilliformis KC583 4684632 YP_988532.1 CDS BARBAKC583_0195 NC_008783.1 199958 200158 D identified by similarity to RF:YP_032687.1; hypothetical protein 199958..200158 Bartonella bacilliformis KC583 4684643 YP_988533.1 CDS BARBAKC583_0196 NC_008783.1 200489 201226 D identified by similarity to SP:P03697; putative exonuclease 200489..201226 Bartonella bacilliformis KC583 4685121 YP_988534.1 CDS BARBAKC583_0197 NC_008783.1 201257 201400 D hypothetical protein 201257..201400 Bartonella bacilliformis KC583 4684841 YP_988535.1 CDS BARBAKC583_0199 NC_008783.1 202279 202434 R hypothetical protein complement(202279..202434) Bartonella bacilliformis KC583 4684767 YP_988536.1 CDS BARBAKC583_0200 NC_008783.1 202405 202575 D identified by similarity to RF:YP_032682.1; hypothetical protein 202405..202575 Bartonella bacilliformis KC583 4684104 YP_988537.1 CDS murA NC_008783.1 202726 204021 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 202726..204021 Bartonella bacilliformis KC583 4684129 YP_988538.1 CDS BARBAKC583_0202 NC_008783.1 204599 205447 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein complement(204599..205447) Bartonella bacilliformis KC583 4685014 YP_988539.1 CDS BARBAKC583_0203 NC_008783.1 205450 206088 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase complement(205450..206088) Bartonella bacilliformis KC583 4683794 YP_988540.1 CDS BARBAKC583_0204 NC_008783.1 207002 207640 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR repeat-containing protein complement(207002..207640) Bartonella bacilliformis KC583 4684724 YP_988541.1 CDS rpmJ NC_008783.1 208027 208152 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(208027..208152) Bartonella bacilliformis KC583 4684869 YP_988542.1 CDS BARBAKC583_0206 NC_008783.1 208634 208855 R hypothetical protein complement(208634..208855) Bartonella bacilliformis KC583 4684330 YP_988543.1 CDS BARBAKC583_0207 NC_008783.1 208863 209105 R hypothetical protein complement(208863..209105) Bartonella bacilliformis KC583 4685095 YP_988544.1 CDS purK NC_008783.1 209516 210667 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(209516..210667) Bartonella bacilliformis KC583 4684090 YP_988545.1 CDS purE NC_008783.1 210676 211173 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(210676..211173) Bartonella bacilliformis KC583 4685148 YP_988546.1 CDS BARBAKC583_0210 NC_008783.1 211621 211743 D hypothetical protein 211621..211743 Bartonella bacilliformis KC583 4685097 YP_988547.1 CDS infA NC_008783.1 212182 212400 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 212182..212400 Bartonella bacilliformis KC583 4684453 YP_988548.1 CDS maf2 NC_008783.1 212877 213539 D identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172; septum formation protein Maf 212877..213539 Bartonella bacilliformis KC583 4684023 YP_988549.1 CDS BARBAKC583_0213 NC_008783.1 213698 213880 D identified by similarity to SP:P67480; hypothetical protein 213698..213880 Bartonella bacilliformis KC583 4683909 YP_988550.1 CDS BARBAKC583_0214 NC_008783.1 214274 214390 D hypothetical protein 214274..214390 Bartonella bacilliformis KC583 4684322 YP_988551.1 CDS BARBAKC583_0215 NC_008783.1 214740 214853 D hypothetical protein 214740..214853 Bartonella bacilliformis KC583 4684318 YP_988552.1 CDS clpB NC_008783.1 214858 217458 D identified by similarity to SP:Q7CEG6; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone ClpB 214858..217458 Bartonella bacilliformis KC583 4684605 YP_988553.1 CDS BARBAKC583_0217 NC_008783.1 217705 217902 D hypothetical protein 217705..217902 Bartonella bacilliformis KC583 4684738 YP_988554.1 CDS BARBAKC583_0219 NC_008783.1 218734 218949 D hypothetical protein 218734..218949 Bartonella bacilliformis KC583 4684471 YP_988555.1 CDS BARBAKC583_0221 NC_008783.1 219843 220043 D hypothetical protein 219843..220043 Bartonella bacilliformis KC583 4685047 YP_988556.1 CDS BARBAKC583_0223 NC_008783.1 220520 220678 D hypothetical protein 220520..220678 Bartonella bacilliformis KC583 4684553 YP_988557.1 CDS BARBAKC583_0224 NC_008783.1 220931 221089 D hypothetical protein 220931..221089 Bartonella bacilliformis KC583 4684743 YP_988558.1 CDS BARBAKC583_0225 NC_008783.1 222089 222208 D hypothetical protein 222089..222208 Bartonella bacilliformis KC583 4684612 YP_988559.1 CDS BARBAKC583_0226 NC_008783.1 223488 223844 D hypothetical protein 223488..223844 Bartonella bacilliformis KC583 4684731 YP_988560.1 CDS BARBAKC583_0227 NC_008783.1 225008 226216 D PBSX family phage terminase large subunit 225008..226216 Bartonella bacilliformis KC583 4684477 YP_988561.1 CDS BARBAKC583_0228 NC_008783.1 226952 228838 D hypothetical protein 226952..228838 Bartonella bacilliformis KC583 4684327 YP_988562.1 CDS BARBAKC583_0229 NC_008783.1 229424 230368 D hypothetical protein 229424..230368 Bartonella bacilliformis KC583 4685107 YP_988563.1 CDS BARBAKC583_0230 NC_008783.1 230650 231825 D identified by similarity to RF:YP_032664.1; hypothetical protein 230650..231825 Bartonella bacilliformis KC583 4684621 YP_988564.1 CDS BARBAKC583_0231 NC_008783.1 231904 232029 D hypothetical protein 231904..232029 Bartonella bacilliformis KC583 4685065 YP_988565.1 CDS BARBAKC583_0232 NC_008783.1 232244 233227 D hypothetical protein 232244..233227 Bartonella bacilliformis KC583 4684944 YP_988566.1 CDS BARBAKC583_0233 NC_008783.1 233396 234859 D hypothetical protein 233396..234859 Bartonella bacilliformis KC583 4684392 YP_988567.1 CDS BARBAKC583_0234 NC_008783.1 234856 235890 D hypothetical protein 234856..235890 Bartonella bacilliformis KC583 4684256 YP_988568.1 CDS BARBAKC583_0235 NC_008783.1 235887 237065 D hypothetical protein 235887..237065 Bartonella bacilliformis KC583 4684904 YP_988569.1 CDS BARBAKC583_0236 NC_008783.1 237065 237259 D hypothetical protein 237065..237259 Bartonella bacilliformis KC583 4684615 YP_988570.1 CDS BARBAKC583_0237 NC_008783.1 237259 237453 D hypothetical protein 237259..237453 Bartonella bacilliformis KC583 4684782 YP_988571.1 CDS BARBAKC583_0238 NC_008783.1 237453 238424 D identified by match to protein family HMM PF07484; hypothetical protein 237453..238424 Bartonella bacilliformis KC583 4685069 YP_988572.1 CDS BARBAKC583_0239 NC_008783.1 238814 239101 D hypothetical protein 238814..239101 Bartonella bacilliformis KC583 4684911 YP_988573.1 CDS BARBAKC583_0240 NC_008783.1 239158 239820 D identified by match to protein family HMM PF00959; phage lysozyme 239158..239820 Bartonella bacilliformis KC583 4684675 YP_988574.1 CDS BARBAKC583_0241 NC_008783.1 239817 240068 D hypothetical protein 239817..240068 Bartonella bacilliformis KC583 4685143 YP_988575.1 CDS BARBAKC583_0242 NC_008783.1 240061 240201 D hypothetical protein 240061..240201 Bartonella bacilliformis KC583 4684151 YP_988576.1 CDS BARBAKC583_0243 NC_008783.1 240712 241098 D hypothetical protein 240712..241098 Bartonella bacilliformis KC583 4685073 YP_988577.1 CDS BARBAKC583_0244 NC_008783.1 241442 241558 D hypothetical protein 241442..241558 Bartonella bacilliformis KC583 4684312 YP_988578.1 CDS BARBAKC583_0245 NC_008783.1 241613 241837 D hypothetical protein 241613..241837 Bartonella bacilliformis KC583 4684871 YP_988579.1 CDS BARBAKC583_0246 NC_008783.1 242017 242145 D hypothetical protein 242017..242145 Bartonella bacilliformis KC583 4685116 YP_988580.1 CDS BARBAKC583_0247 NC_008783.1 242345 242995 D hypothetical protein 242345..242995 Bartonella bacilliformis KC583 4683906 YP_988581.1 CDS BARBAKC583_0248 NC_008783.1 243152 243667 R hypothetical protein complement(243152..243667) Bartonella bacilliformis KC583 4683882 YP_988582.1 CDS BARBAKC583_0249 NC_008783.1 243884 244912 R identified by match to protein family HMM PF07536; sensor histidine kinase complement(243884..244912) Bartonella bacilliformis KC583 4684391 YP_988583.1 CDS BARBAKC583_0250 NC_008783.1 244912 245706 R in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator complement(244912..245706) Bartonella bacilliformis KC583 4684195 YP_988584.1 CDS BARBAKC583_0251 NC_008783.1 245912 246151 D hypothetical protein 245912..246151 Bartonella bacilliformis KC583 4684446 YP_988585.1 CDS BARBAKC583_0253 NC_008783.1 246542 246688 D hypothetical protein 246542..246688 Bartonella bacilliformis KC583 4685146 YP_988586.1 CDS BARBAKC583_0254 NC_008783.1 246688 246804 D hypothetical protein 246688..246804 Bartonella bacilliformis KC583 4684884 YP_988587.1 CDS BARBAKC583_0255 NC_008783.1 247061 248503 D identified by match to protein family HMM PF02518; match to protein family HMM PF07568; sensor histidine kinase 247061..248503 Bartonella bacilliformis KC583 4683842 YP_988588.1 CDS BARBAKC583_0256 NC_008783.1 248644 250584 R identified by match to protein family HMM PF01551; M23 peptidase domain-containing protein complement(248644..250584) Bartonella bacilliformis KC583 4684666 YP_988589.1 CDS BARBAKC583_0257 NC_008783.1 250710 250865 R hypothetical protein complement(250710..250865) Bartonella bacilliformis KC583 4684932 YP_988590.1 CDS BARBAKC583_0264 NC_008783.1 258644 259111 D hypothetical protein 258644..259111 Bartonella bacilliformis KC583 4684541 YP_988591.1 CDS BARBAKC583_0265 NC_008783.1 259768 260124 R identified by similarity to SP:P67703; putative HTH-type transcriptional regulator ygjM complement(259768..260124) Bartonella bacilliformis KC583 4684628 YP_988592.1 CDS BARBAKC583_0266 NC_008783.1 260121 260396 R hypothetical protein complement(260121..260396) Bartonella bacilliformis KC583 4684353 YP_988593.1 CDS BARBAKC583_0267 NC_008783.1 260508 260633 R hypothetical protein complement(260508..260633) Bartonella bacilliformis KC583 4685037 YP_988594.1 CDS BARBAKC583_0268 NC_008783.1 260690 260809 R hypothetical protein complement(260690..260809) Bartonella bacilliformis KC583 4684534 YP_988595.1 CDS BARBAKC583_0270 NC_008783.1 261102 261233 R hypothetical protein complement(261102..261233) Bartonella bacilliformis KC583 4684227 YP_988596.1 CDS BARBAKC583_0271 NC_008783.1 261273 262427 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 261273..262427 Bartonella bacilliformis KC583 4684783 YP_988597.1 CDS BARBAKC583_0273 NC_008783.1 263748 264389 R identified by match to protein family HMM PF00239; resolvase/recombinase complement(263748..264389) Bartonella bacilliformis KC583 4685127 YP_988598.1 CDS BARBAKC583_0274 NC_008783.1 264605 264856 D identified by match to protein family HMM PF04014; putative DNA-binding transcriptional regulator 264605..264856 Bartonella bacilliformis KC583 4685105 YP_988599.1 CDS BARBAKC583_0275 NC_008783.1 264853 265251 D hypothetical protein 264853..265251 Bartonella bacilliformis KC583 4685152 YP_988600.1 CDS BARBAKC583_0276 NC_008783.1 265664 265966 R putative addiction module antidote protein complement(265664..265966) Bartonella bacilliformis KC583 4684140 YP_988601.1 CDS BARBAKC583_0277 NC_008783.1 265997 266320 R identified by match to protein family HMM PF05973; match to protein family HMM TIGR02683; putative addiction module killer protein complement(265997..266320) Bartonella bacilliformis KC583 4685141 YP_988602.1 CDS BARBAKC583_0278 NC_008783.1 266629 266934 D hypothetical protein 266629..266934 Bartonella bacilliformis KC583 4684014 YP_988603.1 CDS BARBAKC583_0279 NC_008783.1 266931 267236 D hypothetical protein 266931..267236 Bartonella bacilliformis KC583 4683949 YP_988604.1 CDS BARBAKC583_0280 NC_008783.1 267431 267664 D hypothetical protein 267431..267664 Bartonella bacilliformis KC583 4684266 YP_988605.1 CDS BARBAKC583_0282 NC_008783.1 267624 267737 D hypothetical protein 267624..267737 Bartonella bacilliformis KC583 4684066 YP_988606.1 CDS BARBAKC583_0281 NC_008783.1 267730 268002 R hypothetical protein complement(267730..268002) Bartonella bacilliformis KC583 4684518 YP_988607.1 CDS BARBAKC583_0283 NC_008783.1 268002 268688 R identified by similarity to SP:P07175; putative partition protein ParA complement(268002..268688) Bartonella bacilliformis KC583 4684914 YP_988608.1 CDS purA NC_008783.1 269682 270971 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 269682..270971 Bartonella bacilliformis KC583 4684673 YP_988609.1 CDS BARBAKC583_0286 NC_008783.1 271223 272722 D identified by similarity to RF:YP_033221.1; hypothetical protein 271223..272722 Bartonella bacilliformis KC583 4685161 YP_988610.1 CDS rpoH2 NC_008783.1 272773 273684 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(272773..273684) Bartonella bacilliformis KC583 4684763 YP_988611.1 CDS BARBAKC583_0288 NC_008783.1 273827 274837 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase complement(273827..274837) Bartonella bacilliformis KC583 4684684 YP_988612.1 CDS BARBAKC583_0289 NC_008783.1 274875 276305 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase (NAD) family protein complement(274875..276305) Bartonella bacilliformis KC583 4684482 YP_988613.1 CDS BARBAKC583_0290 NC_008783.1 276479 276616 D hypothetical protein 276479..276616 Bartonella bacilliformis KC583 4683918 YP_988614.1 CDS BARBAKC583_0291 NC_008783.1 276703 279321 D identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 276703..279321 Bartonella bacilliformis KC583 4684957 YP_988615.1 CDS mscL NC_008783.1 279902 280318 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(279902..280318) Bartonella bacilliformis KC583 4685160 YP_988616.1 CDS pyrD NC_008783.1 280866 281954 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 280866..281954 Bartonella bacilliformis KC583 4683876 YP_988617.1 CDS BARBAKC583_0295 NC_008783.1 282333 283760 D identified by match to protein family HMM PF00120; putative glutamine synthetase 282333..283760 Bartonella bacilliformis KC583 4684577 YP_988618.1 CDS BARBAKC583_0296 NC_008783.1 283772 285055 D identified by match to protein family HMM PF01266; FAD dependent oxidoreductase 283772..285055 Bartonella bacilliformis KC583 4684394 YP_988619.1 CDS folD NC_008783.1 285306 286205 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(285306..286205) Bartonella bacilliformis KC583 4684160 YP_988620.1 CDS BARBAKC583_0298 NC_008783.1 286511 288391 D identified by match to protein family HMM PF05170; AsmA family protein 286511..288391 Bartonella bacilliformis KC583 4685031 YP_988621.1 CDS BARBAKC583_0299 NC_008783.1 288488 288631 R hypothetical protein complement(288488..288631) Bartonella bacilliformis KC583 4684061 YP_988622.1 CDS BARBAKC583_0300 NC_008783.1 288857 289600 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 288857..289600 Bartonella bacilliformis KC583 4683838 YP_988623.1 CDS BARBAKC583_0301 NC_008783.1 289667 291040 D identified by match to protein family HMM PF04107; match to protein family HMM TIGR01436; glutamate--cysteine ligase 289667..291040 Bartonella bacilliformis KC583 4684484 YP_988624.1 CDS rpsU NC_008783.1 291509 291742 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(291509..291742) Bartonella bacilliformis KC583 4684094 YP_988625.1 CDS BARBAKC583_0304 NC_008783.1 292192 292308 D hypothetical protein 292192..292308 Bartonella bacilliformis KC583 4683988 YP_988626.1 CDS BARBAKC583_0305 NC_008783.1 292600 293736 D identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 292600..293736 Bartonella bacilliformis KC583 4684167 YP_988627.1 CDS BARBAKC583_0306 NC_008783.1 293733 296867 D identified by match to protein family HMM PF00873; RND efflux transporter 293733..296867 Bartonella bacilliformis KC583 4684589 YP_988628.1 CDS pgi NC_008783.1 297059 298708 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 297059..298708 Bartonella bacilliformis KC583 4683884 YP_988629.1 CDS rplU NC_008783.1 299126 299599 D identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 299126..299599 Bartonella bacilliformis KC583 4684194 YP_988630.1 CDS rpmA NC_008783.1 299612 299881 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 299612..299881 Bartonella bacilliformis KC583 4684098 YP_988631.1 CDS BARBAKC583_0311 NC_008783.1 300854 302509 D identified by similarity to GB:AAU44778.1; match to protein family HMM PF05658; match to protein family HMM PF05662; Brp family immunodominant surface antigen 300854..302509 Bartonella bacilliformis KC583 4684664 YP_988632.1 CDS BARBAKC583_0312 NC_008783.1 302541 303122 D identified by match to protein family HMM PF06776; invasion associated locus B family protein 302541..303122 Bartonella bacilliformis KC583 4685058 YP_988633.1 CDS BARBAKC583_0313 NC_008783.1 304186 304308 D hypothetical protein 304186..304308 Bartonella bacilliformis KC583 4684308 YP_988634.1 CDS BARBAKC583_0314 NC_008783.1 304277 307984 D identified by similarity to GB:AAU44779.1; match to protein family HMM PF03895; match to protein family HMM PF05662; Brp family immunodominant surface antigen 304277..307984 Bartonella bacilliformis KC583 4684053 YP_988635.1 CDS BARBAKC583_0315 NC_008783.1 308017 308562 D identified by match to protein family HMM PF06776; invasion associated locus B family protein 308017..308562 Bartonella bacilliformis KC583 4684803 YP_988636.1 CDS rrmJ NC_008783.1 309236 309955 D identified by match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 309236..309955 Bartonella bacilliformis KC583 4684912 YP_988637.1 CDS obgE NC_008783.1 310141 311160 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 310141..311160 Bartonella bacilliformis KC583 4684588 YP_988638.1 CDS proB NC_008783.1 311166 312305 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 311166..312305 Bartonella bacilliformis KC583 4684065 YP_988639.1 CDS proA NC_008783.1 312366 313604 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 312366..313604 Bartonella bacilliformis KC583 4683878 YP_988640.1 CDS nadD NC_008783.1 313634 314218 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 313634..314218 Bartonella bacilliformis KC583 4684594 YP_988641.1 CDS BARBAKC583_0321 NC_008783.1 314324 314716 D identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap-like protein 314324..314716 Bartonella bacilliformis KC583 4684629 YP_988642.1 CDS BARBAKC583_0322 NC_008783.1 314717 315199 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 314717..315199 Bartonella bacilliformis KC583 4684499 YP_988643.1 CDS BARBAKC583_0323 NC_008783.1 315302 316564 D identified by match to protein family HMM PF01551; M23 peptidase domain-containing protein 315302..316564 Bartonella bacilliformis KC583 4684033 YP_988644.1 CDS ctpA NC_008783.1 316554 317858 D identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; C-terminal processing peptidase 316554..317858 Bartonella bacilliformis KC583 4684069 YP_988645.1 CDS nudH NC_008783.1 317927 318439 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 317927..318439 Bartonella bacilliformis KC583 4685025 YP_988646.1 CDS ialB NC_008783.1 318556 319116 D identified by similarity to SP:P35641; match to protein family HMM PF06776; invasion protein B 318556..319116 Bartonella bacilliformis KC583 4684760 YP_988647.1 CDS BARBAKC583_0327 NC_008783.1 319442 319735 D identified by match to protein family HMM PF02325; yggt family protein 319442..319735 Bartonella bacilliformis KC583 4684688 YP_988648.1 CDS BARBAKC583_0328 NC_008783.1 319766 320089 D identified by match to protein family HMM PF02594; hypothetical protein 319766..320089 Bartonella bacilliformis KC583 4684205 YP_988649.1 CDS ppa NC_008783.1 320139 320672 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(320139..320672) Bartonella bacilliformis KC583 4684697 YP_988650.1 CDS typA NC_008783.1 320734 322560 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA complement(320734..322560) Bartonella bacilliformis KC583 4684461 YP_988651.1 CDS mgtE NC_008783.1 322845 324221 R identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter complement(322845..324221) Bartonella bacilliformis KC583 4684566 YP_988652.1 CDS BARBAKC583_0332 NC_008783.1 324569 326593 D identified by match to protein family HMM PF01432; M3 family peptidase 324569..326593 Bartonella bacilliformis KC583 4684049 YP_988653.1 CDS BARBAKC583_0333 NC_008783.1 326785 328041 R identified by match to protein family HMM PF01471; match to protein family HMM TIGR02283; putative membrane-bound lytic murein transglycosylase complement(326785..328041) Bartonella bacilliformis KC583 4684139 YP_988654.1 CDS galU NC_008783.1 328310 329194 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 328310..329194 Bartonella bacilliformis KC583 4683791 YP_988655.1 CDS BARBAKC583_0335 NC_008783.1 329234 330226 D identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; KpsF/GutQ family sugar isomerase 329234..330226 Bartonella bacilliformis KC583 4685049 YP_988656.1 CDS BARBAKC583_0336 NC_008783.1 330466 330840 R putative lipoprotein complement(330466..330840) Bartonella bacilliformis KC583 4684510 YP_988657.1 CDS BARBAKC583_0337 NC_008783.1 331097 332482 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent DNA-binding response regulator 331097..332482 Bartonella bacilliformis KC583 4684919 YP_988658.1 CDS BARBAKC583_0338 NC_008783.1 332541 332678 D hypothetical protein 332541..332678 Bartonella bacilliformis KC583 4683851 YP_988659.1 CDS BARBAKC583_0339 NC_008783.1 332697 332831 R hypothetical protein complement(332697..332831) Bartonella bacilliformis KC583 4684692 YP_988660.1 CDS guaB NC_008783.1 334582 336081 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 334582..336081 Bartonella bacilliformis KC583 4684881 YP_988661.1 CDS BARBAKC583_0342 NC_008783.1 336418 337278 R identified by match to protein family HMM PF00582; putative universal stress protein complement(336418..337278) Bartonella bacilliformis KC583 4684740 YP_988662.1 CDS BARBAKC583_0343 NC_008783.1 337522 338808 D identified by match to protein family HMM PF01189; NOL1/NOP2/sun family protein 337522..338808 Bartonella bacilliformis KC583 4684619 YP_988663.1 CDS guaA NC_008783.1 338944 340500 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 338944..340500 Bartonella bacilliformis KC583 4684092 YP_988664.1 CDS BARBAKC583_0345 NC_008783.1 340681 341403 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 340681..341403 Bartonella bacilliformis KC583 4684117 YP_988665.1 CDS ugpC NC_008783.1 341520 342557 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(341520..342557) Bartonella bacilliformis KC583 4685159 YP_988666.1 CDS ugpE NC_008783.1 342560 343411 R identified by similarity to SP:P10906; match to protein family HMM PF00528; glycerol-3-phosphate ABC transporter, permease protein complement(342560..343411) Bartonella bacilliformis KC583 4684402 YP_988667.1 CDS ugpA NC_008783.1 343422 344306 R identified by match to protein family HMM PF00528; glycerol-3-phosphate ABC transporter, permease protein complement(343422..344306) Bartonella bacilliformis KC583 4684101 YP_988668.1 CDS ugpB NC_008783.1 344404 345729 R identified by similarity to SP:P0AG80; match to protein family HMM PF01547; glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein complement(344404..345729) Bartonella bacilliformis KC583 4683905 YP_988669.1 CDS BARBAKC583_0350 NC_008783.1 346116 347063 R identified by match to protein family HMM PF01297; ABC transporter, periplasmic substrate-binding protein complement(346116..347063) Bartonella bacilliformis KC583 4684836 YP_988670.1 CDS BARBAKC583_0351 NC_008783.1 347074 347946 R identified by match to protein family HMM PF00950; ABC transporter, permease protein complement(347074..347946) Bartonella bacilliformis KC583 4684982 YP_988671.1 CDS BARBAKC583_0352 NC_008783.1 347972 348709 R identified by match to protein family HMM PF00005; ABC transporter, ATP-binding protein complement(347972..348709) Bartonella bacilliformis KC583 4684164 YP_988672.1 CDS BARBAKC583_0353 NC_008783.1 348936 349199 R hypothetical protein complement(348936..349199) Bartonella bacilliformis KC583 4684046 YP_988673.1 CDS nrdH NC_008783.1 349418 349642 D identified by similarity to GB:CAA70763.1; match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin-like protein NrdH 349418..349642 Bartonella bacilliformis KC583 4684189 YP_988674.1 CDS nrdI NC_008783.1 349642 350034 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 349642..350034 Bartonella bacilliformis KC583 4684468 YP_988675.1 CDS nrdE NC_008783.1 350022 352172 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 350022..352172 Bartonella bacilliformis KC583 4684213 YP_988676.1 CDS nrdF NC_008783.1 352185 353159 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 352185..353159 Bartonella bacilliformis KC583 4685101 YP_988677.1 CDS BARBAKC583_0357 NC_008783.1 353156 354022 R identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family methyltransferase complement(353156..354022) Bartonella bacilliformis KC583 4685060 YP_988678.1 CDS prfA NC_008783.1 354019 355098 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(354019..355098) Bartonella bacilliformis KC583 4684483 YP_988679.1 CDS fur NC_008783.1 355283 355699 R identified by similarity to GB:AAL04499.1; match to protein family HMM PF01475; ferric uptake regulation protein complement(355283..355699) Bartonella bacilliformis KC583 4684324 YP_988680.1 CDS secA NC_008783.1 355713 358445 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(355713..358445) Bartonella bacilliformis KC583 4683798 YP_988681.1 CDS BARBAKC583_0362 NC_008783.1 358846 359793 D identified by similarity to SP:Q46105; match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein 358846..359793 Bartonella bacilliformis KC583 4685139 YP_988682.1 CDS argJ NC_008783.1 359895 361133 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 359895..361133 Bartonella bacilliformis KC583 4684494 YP_988683.1 CDS mutT NC_008783.1 361255 361668 D identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; mutator mutT protein 361255..361668 Bartonella bacilliformis KC583 4684742 YP_988684.1 CDS BARBAKC583_0365 NC_008783.1 362009 363364 D identified by match to protein family HMM PF00375; dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein 362009..363364 Bartonella bacilliformis KC583 4684676 YP_988685.1 CDS BARBAKC583_0366 NC_008783.1 363387 364277 R identified by similarity to RF:NP_698859.1; match to protein family HMM PF08242; match to protein family HMM TIGR02072; hypothetical protein complement(363387..364277) Bartonella bacilliformis KC583 4684368 YP_988686.1 CDS BARBAKC583_0367 NC_008783.1 364495 365250 D comF family protein 364495..365250 Bartonella bacilliformis KC583 4684232 YP_988687.1 CDS grxC NC_008783.1 365290 365547 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 365290..365547 Bartonella bacilliformis KC583 4684749 YP_988688.1 CDS ubiG NC_008783.1 365565 366311 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(365565..366311) Bartonella bacilliformis KC583 4683879 YP_988689.1 CDS BARBAKC583_0370 NC_008783.1 366495 367748 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 366495..367748 Bartonella bacilliformis KC583 4684559 YP_988690.1 CDS nhaA NC_008783.1 368168 369526 R identified by similarity to SP:P13738; match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA complement(368168..369526) Bartonella bacilliformis KC583 4684153 YP_988691.1 CDS BARBAKC583_0372 NC_008783.1 369647 371350 R hypothetical protein complement(369647..371350) Bartonella bacilliformis KC583 4684893 YP_988692.1 CDS BARBAKC583_0373 NC_008783.1 371869 372540 D hypothetical protein 371869..372540 Bartonella bacilliformis KC583 4684772 YP_988693.1 CDS engA NC_008783.1 372545 373966 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 372545..373966 Bartonella bacilliformis KC583 4684496 YP_988694.1 CDS BARBAKC583_0375 NC_008783.1 374282 374719 D identified by similarity to RF:YP_033249.1; hypothetical protein 374282..374719 Bartonella bacilliformis KC583 4684765 YP_988695.1 CDS atpB NC_008783.1 374721 375479 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 374721..375479 Bartonella bacilliformis KC583 4684608 YP_988696.1 CDS BARBAKC583_0377 NC_008783.1 375534 375764 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 375534..375764 Bartonella bacilliformis KC583 4684079 YP_988697.1 CDS BARBAKC583_0378 NC_008783.1 375972 376457 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 375972..376457 Bartonella bacilliformis KC583 4684951 YP_988698.1 CDS BARBAKC583_0379 NC_008783.1 376469 376948 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 376469..376948 Bartonella bacilliformis KC583 4684601 YP_988699.1 CDS glyS NC_008783.1 377343 379565 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(377343..379565) Bartonella bacilliformis KC583 4685123 YP_988700.1 CDS glyQ NC_008783.1 379558 380508 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(379558..380508) Bartonella bacilliformis KC583 4683839 YP_988701.1 CDS BARBAKC583_0382 NC_008783.1 380574 382304 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR repeat-containing protein complement(380574..382304) Bartonella bacilliformis KC583 4684018 YP_988702.1 CDS BARBAKC583_0383 NC_008783.1 382394 383410 R identified by match to protein family HMM PF00348; polyprenyl synthetase complement(382394..383410) Bartonella bacilliformis KC583 4684469 YP_988703.1 CDS BARBAKC583_0384 NC_008783.1 383672 384463 D identified by match to protein family HMM PF05175; methyltransferase domain-containing protein 383672..384463 Bartonella bacilliformis KC583 4683939 YP_988704.1 CDS BARBAKC583_0385 NC_008783.1 384566 385417 D identified by match to protein family HMM PF01343; S49 family peptidase 384566..385417 Bartonella bacilliformis KC583 4684103 YP_988705.1 CDS BARBAKC583_0386 NC_008783.1 385496 385684 D hypothetical protein 385496..385684 Bartonella bacilliformis KC583 4683929 YP_988706.1 CDS ispE NC_008783.1 385681 386595 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 385681..386595 Bartonella bacilliformis KC583 4684924 YP_988707.1 CDS rnhB NC_008783.1 386884 387552 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 386884..387552 Bartonella bacilliformis KC583 4685027 YP_988708.1 CDS BARBAKC583_0389 NC_008783.1 387549 388511 D identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC family protein 387549..388511 Bartonella bacilliformis KC583 4685074 YP_988709.1 CDS BARBAKC583_0390 NC_008783.1 388514 389923 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD-binding protein 388514..389923 Bartonella bacilliformis KC583 4684289 YP_988710.1 CDS BARBAKC583_0391 NC_008783.1 390075 390593 D hypothetical protein 390075..390593 Bartonella bacilliformis KC583 4684451 YP_988711.1 CDS purD NC_008783.1 390863 392137 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(390863..392137) Bartonella bacilliformis KC583 4684259 YP_988712.1 CDS ubiA NC_008783.1 392230 393234 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 392230..393234 Bartonella bacilliformis KC583 4684977 YP_988713.1 CDS pdxH NC_008783.1 393315 393962 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(393315..393962) Bartonella bacilliformis KC583 4684865 YP_988714.1 CDS BARBAKC583_0395 NC_008783.1 394256 395155 D identified by match to protein family HMM PF00226; match to protein family HMM PF01556; DnaJ family protein 394256..395155 Bartonella bacilliformis KC583 4683870 YP_988715.1 CDS BARBAKC583_0396 NC_008783.1 395293 396111 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 395293..396111 Bartonella bacilliformis KC583 4684219 YP_988716.1 CDS aroC NC_008783.1 396240 397334 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 396240..397334 Bartonella bacilliformis KC583 4684119 YP_988717.1 CDS ribBA NC_008783.1 397345 398457 D identified by match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibBA 397345..398457 Bartonella bacilliformis KC583 4684580 YP_988718.1 CDS xseB NC_008783.1 398465 398719 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 398465..398719 Bartonella bacilliformis KC583 4683889 YP_988719.1 CDS dxs NC_008783.1 398917 400833 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 398917..400833 Bartonella bacilliformis KC583 4683822 YP_988720.1 CDS BARBAKC583_0401 NC_008783.1 400841 401593 D identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 400841..401593 Bartonella bacilliformis KC583 4684154 YP_988721.1 CDS BARBAKC583_0402 NC_008783.1 401583 402836 D identified by match to protein family HMM PF05958; tRNA (Uracil-5-)-methyltransferase 401583..402836 Bartonella bacilliformis KC583 4684062 YP_988722.1 CDS BARBAKC583_0403 NC_008783.1 402896 404314 R identified by match to protein family HMM PF01523; TldD/PmbA family protein complement(402896..404314) Bartonella bacilliformis KC583 4684060 YP_988723.1 CDS BARBAKC583_0404 NC_008783.1 404424 404963 R identified by match to protein family HMM PF06776; invasion associated locus B family protein complement(404424..404963) Bartonella bacilliformis KC583 4684876 YP_988724.1 CDS cyoE NC_008783.1 405361 406296 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 405361..406296 Bartonella bacilliformis KC583 4685162 YP_988725.1 CDS ispH NC_008783.1 406484 407533 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 406484..407533 Bartonella bacilliformis KC583 4684938 YP_988726.1 CDS BARBAKC583_0407 NC_008783.1 407646 407771 D hypothetical protein 407646..407771 Bartonella bacilliformis KC583 4684378 YP_988727.1 CDS rnhA NC_008783.1 407962 408429 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 407962..408429 Bartonella bacilliformis KC583 4684383 YP_988728.1 CDS BARBAKC583_0408 NC_008783.1 408419 409324 R hypothetical protein complement(408419..409324) Bartonella bacilliformis KC583 4683935 YP_988729.1 CDS BARBAKC583_0410 NC_008783.1 410045 412921 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF07695; match to protein family HMM PF07696; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase complement(410045..412921) Bartonella bacilliformis KC583 4684882 YP_988730.1 CDS BARBAKC583_0411 NC_008783.1 413366 414634 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(413366..414634) Bartonella bacilliformis KC583 4683826 YP_988731.1 CDS BARBAKC583_0412 NC_008783.1 415015 415707 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase complement(415015..415707) Bartonella bacilliformis KC583 4684703 YP_988732.1 CDS ccrMIM NC_008783.1 416018 417154 D identified by similarity to SP:Q45971; match to protein family HMM PF01555; modification methylase CcrMI 416018..417154 Bartonella bacilliformis KC583 4684282 YP_988733.1 CDS mutY NC_008783.1 417244 418296 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(417244..418296) Bartonella bacilliformis KC583 4684346 YP_988734.1 CDS BARBAKC583_0415 NC_008783.1 418329 418445 D hypothetical protein 418329..418445 Bartonella bacilliformis KC583 4683941 YP_988735.1 CDS BARBAKC583_0416 NC_008783.1 418517 419011 D identified by match to protein family HMM PF06647; hypothetical protein 418517..419011 Bartonella bacilliformis KC583 4684967 YP_988736.1 CDS BARBAKC583_0417 NC_008783.1 419106 419756 D identified by match to protein family HMM PF01323; DSBA-like thioredoxin domain-containing protein 419106..419756 Bartonella bacilliformis KC583 4684776 YP_988737.1 CDS ppdK NC_008783.1 419941 422628 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 419941..422628 Bartonella bacilliformis KC583 4684515 YP_988738.1 CDS sodB NC_008783.1 423656 424252 D identified by similarity to SP:P50061; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 423656..424252 Bartonella bacilliformis KC583 4684546 YP_988739.1 CDS BARBAKC583_0421 NC_008783.1 424345 426435 R identified by match to protein family HMM PF00326; match to protein family HMM PF02897; peptidase, S9A/B/C family protein complement(424345..426435) Bartonella bacilliformis KC583 4684071 YP_988740.1 CDS BARBAKC583_0422 NC_008783.1 427036 427176 R hypothetical protein complement(427036..427176) Bartonella bacilliformis KC583 4684895 YP_988741.1 CDS BARBAKC583_0423 NC_008783.1 427263 427694 D identified by similarity to SP:Q04152; match to protein family HMM PF05443; Ros/MucR family transcriptional regulator 427263..427694 Bartonella bacilliformis KC583 4684031 YP_988742.1 CDS sufE NC_008783.1 427808 428215 R identified by match to protein family HMM PF02657; cysteine desulfuration protein SufE complement(427808..428215) Bartonella bacilliformis KC583 4684284 YP_988743.1 CDS BARBAKC583_0425 NC_008783.1 428340 428702 R hypothetical protein complement(428340..428702) Bartonella bacilliformis KC583 4684674 YP_988744.1 CDS BARBAKC583_0426 NC_008783.1 429266 430111 D identified by match to protein family HMM PF01471; peptidoglycan binding domain-containing protein 429266..430111 Bartonella bacilliformis KC583 4683825 YP_988745.1 CDS BARBAKC583_0427 NC_008783.1 430337 430513 D hypothetical protein 430337..430513 Bartonella bacilliformis KC583 4684721 YP_988746.1 CDS feuP NC_008783.1 430531 431196 D identified by similarity to GB:CAA73687.1; match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator FeuP 430531..431196 Bartonella bacilliformis KC583 4684825 YP_988747.1 CDS feuQ NC_008783.1 431193 432614 D identified by similarity to GB:CAA62009.1; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase FeuQ 431193..432614 Bartonella bacilliformis KC583 4684040 YP_988748.1 CDS BARBAKC583_0430 NC_008783.1 432728 433564 D identified by similarity to SP:P45400; putative cytochrome c-type biogenesis protein CycH 432728..433564 Bartonella bacilliformis KC583 4685055 YP_988749.1 CDS cycJ NC_008783.1 433763 434239 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 433763..434239 Bartonella bacilliformis KC583 4684972 YP_988750.1 CDS cycK NC_008783.1 434255 436234 D identified by match to protein family HMM PF01578; cytochrome c-type biogenesis protein CycK 434255..436234 Bartonella bacilliformis KC583 4683899 YP_988751.1 CDS cycL NC_008783.1 436237 436680 D identified by similarity to SP:P45406; match to protein family HMM PF03918; cytochrome c-type biogenesis protein CycL 436237..436680 Bartonella bacilliformis KC583 4684840 YP_988752.1 CDS BARBAKC583_0434 NC_008783.1 436882 438399 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease Do family protein 436882..438399 Bartonella bacilliformis KC583 4684611 YP_988753.1 CDS BARBAKC583_0435 NC_008783.1 438476 439162 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 438476..439162 Bartonella bacilliformis KC583 4683789 YP_988754.1 CDS BARBAKC583_0436 NC_008783.1 439159 440541 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 439159..440541 Bartonella bacilliformis KC583 4685004 YP_988755.1 CDS BARBAKC583_0437 NC_008783.1 440609 440734 D hypothetical protein 440609..440734 Bartonella bacilliformis KC583 4683903 YP_988756.1 CDS BARBAKC583_0438 NC_008783.1 440857 443178 R identified by similarity to SP:P37894; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229; putative non-motile and phage-resistance protein complement(440857..443178) Bartonella bacilliformis KC583 4684138 YP_988757.1 CDS pepN NC_008783.1 443458 446085 R identified by similarity to SP:P37893; match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase N complement(443458..446085) Bartonella bacilliformis KC583 4684529 YP_988758.1 CDS BARBAKC583_0440 NC_008783.1 446164 446991 R identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase complement(446164..446991) Bartonella bacilliformis KC583 4684850 YP_988759.1 CDS thiD NC_008783.1 447202 447960 R identified by similarity to SP:P56904; match to protein family HMM PF01256; match to protein family HMM PF08543; phosphomethylpyrimidine kinase complement(447202..447960) Bartonella bacilliformis KC583 4683958 YP_988760.1 CDS thiE NC_008783.1 447951 448556 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(447951..448556) Bartonella bacilliformis KC583 4684091 YP_988761.1 CDS thiG NC_008783.1 448553 449326 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(448553..449326) Bartonella bacilliformis KC583 4683880 YP_988762.1 CDS thiS NC_008783.1 449331 449528 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(449331..449528) Bartonella bacilliformis KC583 4684159 YP_988763.1 CDS BARBAKC583_0445 NC_008783.1 449532 450482 R identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352; thiamine biosynthesis oxidoreductase complement(449532..450482) Bartonella bacilliformis KC583 4684305 YP_988764.1 CDS thiC NC_008783.1 450479 452314 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(450479..452314) Bartonella bacilliformis KC583 4684433 YP_988765.1 CDS BARBAKC583_0447 NC_008783.1 453146 454366 R identified by match to protein family HMM PF02530; porin family protein complement(453146..454366) Bartonella bacilliformis KC583 4685029 YP_988766.1 CDS BARBAKC583_0449 NC_008783.1 455541 455819 D hypothetical protein 455541..455819 Bartonella bacilliformis KC583 4684371 YP_988767.1 CDS BARBAKC583_0450 NC_008783.1 455883 456107 D hypothetical protein 455883..456107 Bartonella bacilliformis KC583 4685153 YP_988768.1 CDS BARBAKC583_0451 NC_008783.1 456224 456382 D hypothetical protein 456224..456382 Bartonella bacilliformis KC583 4684807 YP_988769.1 CDS BARBAKC583_0452 NC_008783.1 456477 458420 R homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:NP_711581.1; match to protein family HMM PF07598; hypothetical protein complement(456477..458420) Bartonella bacilliformis KC583 4684172 YP_988770.1 CDS BARBAKC583_0453 NC_008783.1 459089 459862 D identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase family protein 459089..459862 Bartonella bacilliformis KC583 4683967 YP_988771.1 CDS BARBAKC583_0454 NC_008783.1 459877 460071 R hypothetical protein complement(459877..460071) Bartonella bacilliformis KC583 4684960 YP_988772.1 CDS hmuV NC_008783.1 460068 460862 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(460068..460862) Bartonella bacilliformis KC583 4684650 YP_988773.1 CDS hmuU NC_008783.1 460855 461955 R identified by similarity to GB:CAC34394.1; match to protein family HMM PF01032; hemin ABC transporter, permease protein complement(460855..461955) Bartonella bacilliformis KC583 4684190 YP_988774.1 CDS hmuT NC_008783.1 461952 462863 R identified by similarity to GB:CAC34393.1; match to protein family HMM PF01497; hemin ABC transporter, periplasmic hemin-binding protein complement(461952..462863) Bartonella bacilliformis KC583 4684662 YP_988775.1 CDS hmuS NC_008783.1 462881 463924 R identified by similarity to GB:CAC34392.1; match to protein family HMM PF05171; hemin transport protein HmuS complement(462881..463924) Bartonella bacilliformis KC583 4684901 YP_988776.1 CDS BARBAKC583_0459 NC_008783.1 463995 464126 D hypothetical protein 463995..464126 Bartonella bacilliformis KC583 4684274 YP_988777.1 CDS BARBAKC583_0460 NC_008783.1 464173 466368 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786; TonB-dependent heme/hemoglobin receptor family protein complement(464173..466368) Bartonella bacilliformis KC583 4684124 YP_988778.1 CDS BARBAKC583_0462 NC_008783.1 467633 469597 R identified by match to protein family HMM PF01464; transglycosylase complement(467633..469597) Bartonella bacilliformis KC583 4684625 YP_988779.1 CDS BARBAKC583_0463 NC_008783.1 469596 469760 D hypothetical protein 469596..469760 Bartonella bacilliformis KC583 4683930 YP_988780.1 CDS dapA NC_008783.1 469973 470857 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 469973..470857 Bartonella bacilliformis KC583 4684902 YP_988781.1 CDS smpB NC_008783.1 470876 471352 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 470876..471352 Bartonella bacilliformis KC583 4685131 YP_988782.1 CDS BARBAKC583_0466 NC_008783.1 471387 472073 R identified by match to protein family HMM PF03167; uracil DNA glycosylase family protein complement(471387..472073) Bartonella bacilliformis KC583 4683871 YP_988783.1 CDS rpoZ NC_008783.1 472472 472870 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 472472..472870 Bartonella bacilliformis KC583 4684143 YP_988784.1 CDS relA NC_008783.1 472998 475226 D identified by similarity to SP:O52177; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 472998..475226 Bartonella bacilliformis KC583 4684373 YP_988785.1 CDS pyrE NC_008783.1 475242 475820 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 475242..475820 Bartonella bacilliformis KC583 4683831 YP_988786.1 CDS BARBAKC583_0470 NC_008783.1 475914 476516 D hypothetical protein 475914..476516 Bartonella bacilliformis KC583 4683922 YP_988787.1 CDS acpS NC_008783.1 476513 476914 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 476513..476914 Bartonella bacilliformis KC583 4684949 YP_988788.1 CDS lepB NC_008783.1 476982 477764 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 476982..477764 Bartonella bacilliformis KC583 4683875 YP_988789.1 CDS rnc NC_008783.1 477775 478482 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 477775..478482 Bartonella bacilliformis KC583 4685102 YP_988790.1 CDS era NC_008783.1 478475 479380 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 478475..479380 Bartonella bacilliformis KC583 4684983 YP_988791.1 CDS recO NC_008783.1 479383 480120 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 479383..480120 Bartonella bacilliformis KC583 4684405 YP_988792.1 CDS panC NC_008783.1 480157 481002 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 480157..481002 Bartonella bacilliformis KC583 4684356 YP_988793.1 CDS panB NC_008783.1 481014 481829 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 481014..481829 Bartonella bacilliformis KC583 4684397 YP_988794.1 CDS BARBAKC583_0479 NC_008783.1 482811 483671 R identified by match to protein family HMM PF01571; match to protein family HMM PF08669; aminomethyltransferase complement(482811..483671) Bartonella bacilliformis KC583 4683914 YP_988795.1 CDS BARBAKC583_0480 NC_008783.1 483735 485060 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 483735..485060 Bartonella bacilliformis KC583 4684658 YP_988796.1 CDS cysS NC_008783.1 485478 486980 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 485478..486980 Bartonella bacilliformis KC583 4685030 YP_988797.1 CDS BARBAKC583_0482 NC_008783.1 487389 489272 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter, permease/ATP-binding protein 487389..489272 Bartonella bacilliformis KC583 4684636 YP_988798.1 CDS psd NC_008783.1 489384 490082 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 489384..490082 Bartonella bacilliformis KC583 4684110 YP_988799.1 CDS pssA NC_008783.1 490091 490930 D identified by match to protein family HMM PF01066; CDP-diacylglycerol--serine O-phosphatidyltransferase 490091..490930 Bartonella bacilliformis KC583 4684072 YP_988800.1 CDS BARBAKC583_0485 NC_008783.1 491013 491762 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase complement(491013..491762) Bartonella bacilliformis KC583 4684590 YP_988801.1 CDS cvpA1 NC_008783.1 491765 493255 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(491765..493255) Bartonella bacilliformis KC583 4685038 YP_988802.1 CDS cvpA2 NC_008783.1 493343 493906 R identified by match to protein family HMM PF02674; CvpA protein complement(493343..493906) Bartonella bacilliformis KC583 4685092 YP_988803.1 CDS cvpA NC_008783.1 494201 494668 R identified by match to protein family HMM PF02674; CvpA protein complement(494201..494668) Bartonella bacilliformis KC583 4683977 YP_988804.1 CDS radA NC_008783.1 494823 496196 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(494823..496196) Bartonella bacilliformis KC583 4684630 YP_988805.1 CDS dnaB NC_008783.1 496209 497711 R unwinds double stranded DNA; replicative DNA helicase complement(496209..497711) Bartonella bacilliformis KC583 4685130 YP_988806.1 CDS rplI NC_008783.1 498165 498704 R identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; ribosomal protein L9 complement(498165..498704) Bartonella bacilliformis KC583 4684727 YP_988807.1 CDS BARBAKC583_0492 NC_008783.1 498730 499710 R hypothetical protein complement(498730..499710) Bartonella bacilliformis KC583 4684657 YP_988808.1 CDS rpsR NC_008783.1 499866 500114 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(499866..500114) Bartonella bacilliformis KC583 4684550 YP_988809.1 CDS rpsF NC_008783.1 500114 500524 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(500114..500524) Bartonella bacilliformis KC583 4684511 YP_988810.1 CDS BARBAKC583_0495 NC_008783.1 500881 501468 D identified by match to protein family HMM PF01569; PAP2 superfamily protein 500881..501468 Bartonella bacilliformis KC583 4683817 YP_988811.1 CDS fabD NC_008783.1 501535 502479 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 501535..502479 Bartonella bacilliformis KC583 4684543 YP_988812.1 CDS fabG NC_008783.1 502498 503235 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 502498..503235 Bartonella bacilliformis KC583 4684220 YP_988813.1 CDS acpP NC_008783.1 503494 503730 D identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517; acyl carrier protein 503494..503730 Bartonella bacilliformis KC583 4684417 YP_988814.1 CDS fabF NC_008783.1 503840 505102 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 503840..505102 Bartonella bacilliformis KC583 4684787 YP_988815.1 CDS BARBAKC583_0500 NC_008783.1 505068 505199 D hypothetical protein 505068..505199 Bartonella bacilliformis KC583 4684000 YP_988816.1 CDS BARBAKC583_0501 NC_008783.1 505211 506320 D identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 505211..506320 Bartonella bacilliformis KC583 4684432 YP_988817.1 CDS gmk NC_008783.1 506402 507067 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 506402..507067 Bartonella bacilliformis KC583 4684649 YP_988818.1 CDS ksgA NC_008783.1 507118 507948 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(507118..507948) Bartonella bacilliformis KC583 4684920 YP_988819.1 CDS pdxA NC_008783.1 507939 508949 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(507939..508949) Bartonella bacilliformis KC583 4684858 YP_988820.1 CDS BARBAKC583_0505 NC_008783.1 508949 509926 R identified by match to protein family HMM PF09312; SurA domain-containing protein complement(508949..509926) Bartonella bacilliformis KC583 4685093 YP_988821.1 CDS BARBAKC583_0506 NC_008783.1 510034 512409 R identified by match to protein family HMM PF03968; match to protein family HMM PF04453; organic solvent tolerance protein complement(510034..512409) Bartonella bacilliformis KC583 4684903 YP_988822.1 CDS BARBAKC583_0507 NC_008783.1 512422 513513 R identified by match to protein family HMM PF03739; YjgP/YjgQ permease complement(512422..513513) Bartonella bacilliformis KC583 4684715 YP_988823.1 CDS BARBAKC583_0508 NC_008783.1 513510 514700 R identified by match to protein family HMM PF03739; YjgP/YjgQ permease complement(513510..514700) Bartonella bacilliformis KC583 4684291 YP_988824.1 CDS holC NC_008783.1 515077 515526 D binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 515077..515526 Bartonella bacilliformis KC583 4683799 YP_988825.1 CDS BARBAKC583_0510 NC_008783.1 515526 515705 D hypothetical protein 515526..515705 Bartonella bacilliformis KC583 4685089 YP_988826.1 CDS BARBAKC583_0511 NC_008783.1 515698 515961 D hypothetical protein 515698..515961 Bartonella bacilliformis KC583 4684672 YP_988827.1 CDS BARBAKC583_0512 NC_008783.1 516533 518980 D identified by similarity to GB:AAD41751.1; match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414; putative adhesin/invasin 516533..518980 Bartonella bacilliformis KC583 4684839 YP_988828.1 CDS BARBAKC583_0513 NC_008783.1 519417 521819 D identified by similarity to GB:AAD41751.1; match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414; putative adhesin/invasin 519417..521819 Bartonella bacilliformis KC583 4684971 YP_988829.1 CDS ndk NC_008783.1 522543 522965 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 522543..522965 Bartonella bacilliformis KC583 4683850 YP_988830.1 CDS pgsA NC_008783.1 523436 524020 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(523436..524020) Bartonella bacilliformis KC583 4684146 YP_988831.1 CDS uvrC NC_008783.1 524104 526080 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(524104..526080) Bartonella bacilliformis KC583 4684800 YP_988832.1 CDS BARBAKC583_0517 NC_008783.1 526474 527340 R identified by similarity to SP:P37634; match to protein family HMM PF04378; yhiR family protein complement(526474..527340) Bartonella bacilliformis KC583 4684175 YP_988833.1 CDS BARBAKC583_0518 NC_008783.1 527435 527557 R hypothetical protein complement(527435..527557) Bartonella bacilliformis KC583 4684604 YP_988834.1 CDS serS NC_008783.1 528351 529628 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 528351..529628 Bartonella bacilliformis KC583 4684779 YP_988835.1 CDS pcm NC_008783.1 529763 530422 D catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 529763..530422 Bartonella bacilliformis KC583 4684242 YP_988836.1 CDS BARBAKC583_0521 NC_008783.1 530587 531780 D identified by match to protein family HMM PF01476; match to protein family HMM PF01551; LysM/M23 peptidase 530587..531780 Bartonella bacilliformis KC583 4684134 YP_988837.1 CDS BARBAKC583_0522 NC_008783.1 532091 532258 D hypothetical protein 532091..532258 Bartonella bacilliformis KC583 4684986 YP_988838.1 CDS yajC NC_008783.1 532537 533001 D identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase, YajC subunit 532537..533001 Bartonella bacilliformis KC583 4685064 YP_988839.1 CDS BARBAKC583_0524 NC_008783.1 533009 533182 R hypothetical protein complement(533009..533182) Bartonella bacilliformis KC583 4684913 YP_988840.1 CDS BARBAKC583_0525 NC_008783.1 533391 533777 D identified by similarity to PDB:2FVT_A; match to protein family HMM PF04430; hypothetical protein 533391..533777 Bartonella bacilliformis KC583 4683895 YP_988841.1 CDS BARBAKC583_0526 NC_008783.1 533774 534634 D hypothetical protein 533774..534634 Bartonella bacilliformis KC583 4683837 YP_988842.1 CDS BARBAKC583_0527 NC_008783.1 534886 536775 R identified by similarity to RF:YP_033401.1; hypothetical protein complement(534886..536775) Bartonella bacilliformis KC583 4684835 YP_988843.1 CDS tpiA NC_008783.1 536964 537728 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 536964..537728 Bartonella bacilliformis KC583 4684665 YP_988844.1 CDS secG NC_008783.1 537827 538276 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 537827..538276 Bartonella bacilliformis KC583 4684255 YP_988845.1 CDS pyrG NC_008783.1 538394 540022 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 538394..540022 Bartonella bacilliformis KC583 4683896 YP_988846.1 CDS kdsA NC_008783.1 540059 540907 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 540059..540907 Bartonella bacilliformis KC583 4684922 YP_988847.1 CDS eno NC_008783.1 540998 542269 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 540998..542269 Bartonella bacilliformis KC583 4683960 YP_988848.1 CDS BARBAKC583_0533 NC_008783.1 542600 542929 D identified by match to protein family HMM PF04977; septum formation initiator family protein 542600..542929 Bartonella bacilliformis KC583 4684711 YP_988849.1 CDS pdhA NC_008783.1 543060 544112 D identified by match to protein family HMM PF00676; match to protein family HMM TIGR03182; pyruvate dehydrogenase E1 component, alpha subunit 543060..544112 Bartonella bacilliformis KC583 4684838 YP_988850.1 CDS pdhB NC_008783.1 544129 545493 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 544129..545493 Bartonella bacilliformis KC583 4683926 YP_988851.1 CDS pdhC NC_008783.1 545508 546833 D identified by similarity to SP:Q9R9N3; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349; branched-chain alpha-keto acid dehydrogenase subunit E2 545508..546833 Bartonella bacilliformis KC583 4684660 YP_988852.1 CDS lpdA2 NC_008783.1 547049 548509 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 547049..548509 Bartonella bacilliformis KC583 4685015 YP_988853.1 CDS lipA NC_008783.1 548586 549539 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 548586..549539 Bartonella bacilliformis KC583 4685032 YP_988854.1 CDS BARBAKC583_0539 NC_008783.1 549551 550012 D identified by match to protein family HMM PF03364; cyclase/dehydrase family protein 549551..550012 Bartonella bacilliformis KC583 4684599 YP_988855.1 CDS ispDF NC_008783.1 550103 551296 R identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453; IspD/IspF bifunctional enzyme complement(550103..551296) Bartonella bacilliformis KC583 4684478 YP_988856.1 CDS BARBAKC583_0541 NC_008783.1 551809 551940 D hypothetical protein 551809..551940 Bartonella bacilliformis KC583 4684211 YP_988857.1 CDS ntrY NC_008783.1 551962 554190 D identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; nitrogen regulation protein NtrY 551962..554190 Bartonella bacilliformis KC583 4684814 YP_988858.1 CDS ntrX NC_008783.1 554218 555576 D identified by similarity to SP:Q04849; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; nitrogen assimilation regulatory protein NtrX 554218..555576 Bartonella bacilliformis KC583 4684239 YP_988859.1 CDS trkA NC_008783.1 555580 556956 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 555580..556956 Bartonella bacilliformis KC583 4684184 YP_988860.1 CDS clpP NC_008783.1 557915 558547 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 557915..558547 Bartonella bacilliformis KC583 4684073 YP_988861.1 CDS clpX NC_008783.1 558755 560029 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 558755..560029 Bartonella bacilliformis KC583 4684370 YP_988862.1 CDS lon NC_008783.1 560206 562629 D identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 560206..562629 Bartonella bacilliformis KC583 4684734 YP_988863.1 CDS BARBAKC583_0549 NC_008783.1 562604 562717 D hypothetical protein 562604..562717 Bartonella bacilliformis KC583 4685061 YP_988864.1 CDS hupB NC_008783.1 562856 563134 D identified by similarity to SP:P0ACF4; match to protein family HMM PF00216; DNA-binding protein HU-beta 562856..563134 Bartonella bacilliformis KC583 4684592 YP_988865.1 CDS gid NC_008783.1 563823 565217 R TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid complement(563823..565217) Bartonella bacilliformis KC583 4684244 YP_988866.1 CDS tig NC_008783.1 565640 567064 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 565640..567064 Bartonella bacilliformis KC583 4683982 YP_988867.1 CDS gatB NC_008783.1 567236 568735 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 567236..568735 Bartonella bacilliformis KC583 4683902 YP_988868.1 CDS BARBAKC583_0555 NC_008783.1 568930 569328 D Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase 568930..569328 Bartonella bacilliformis KC583 4684196 YP_988869.1 CDS BARBAKC583_0556 NC_008783.1 569416 569814 D hypothetical protein 569416..569814 Bartonella bacilliformis KC583 4684813 YP_988870.1 CDS BARBAKC583_0557 NC_008783.1 569989 570492 D hypothetical protein 569989..570492 Bartonella bacilliformis KC583 4684163 YP_988871.1 CDS BARBAKC583_0559 NC_008783.1 570600 571322 D identified by match to protein family HMM PF01694; S54 family peptidase 570600..571322 Bartonella bacilliformis KC583 4684017 YP_988872.1 CDS BARBAKC583_0558 NC_008783.1 571312 572142 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase complement(571312..572142) Bartonella bacilliformis KC583 4683813 YP_988873.1 CDS BARBAKC583_0562 NC_008783.1 572465 572605 D hypothetical protein 572465..572605 Bartonella bacilliformis KC583 4684297 YP_988874.1 CDS tuf1 NC_008783.1 572688 573863 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 572688..573863 Bartonella bacilliformis KC583 4684165 YP_988875.1 CDS secE NC_008783.1 574217 574420 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 574217..574420 Bartonella bacilliformis KC583 4684231 YP_988876.1 CDS nusG NC_008783.1 574441 574971 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 574441..574971 Bartonella bacilliformis KC583 4683998 YP_988877.1 CDS rplK NC_008783.1 575124 575552 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 575124..575552 Bartonella bacilliformis KC583 4684848 YP_988878.1 CDS rplA NC_008783.1 575557 576255 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 575557..576255 Bartonella bacilliformis KC583 4683968 YP_988879.1 CDS rplJ NC_008783.1 576612 577130 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 576612..577130 Bartonella bacilliformis KC583 4684223 YP_988880.1 CDS rplL NC_008783.1 577236 577607 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 577236..577607 Bartonella bacilliformis KC583 4685006 YP_988881.1 CDS rpoB NC_008783.1 577891 582042 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 577891..582042 Bartonella bacilliformis KC583 4683812 YP_988882.1 CDS rpoC NC_008783.1 582204 586415 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 582204..586415 Bartonella bacilliformis KC583 4684810 YP_988883.1 CDS BARBAKC583_0573 NC_008783.1 586776 587462 D identified by match to protein family HMM PF00881; nitroreductase family protein 586776..587462 Bartonella bacilliformis KC583 4684044 YP_988884.1 CDS BARBAKC583_0574 NC_008783.1 587625 587738 D hypothetical protein 587625..587738 Bartonella bacilliformis KC583 4684702 YP_988885.1 CDS BARBAKC583_0576 NC_008783.1 589606 589734 D hypothetical protein 589606..589734 Bartonella bacilliformis KC583 4684316 YP_988886.1 CDS BARBAKC583_0577 NC_008783.1 589946 591292 R identified by match to protein family HMM PF00768; match to protein family HMM PF05036; D-alanyl-D-alanine carboxypeptidase complement(589946..591292) Bartonella bacilliformis KC583 4684479 YP_988887.1 CDS clpS NC_008783.1 591619 591897 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 591619..591897 Bartonella bacilliformis KC583 4684709 YP_988888.1 CDS clpA NC_008783.1 591904 594270 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639; ATP-dependent Clp protease ATP-binding subunit ClpA 591904..594270 Bartonella bacilliformis KC583 4684998 YP_988889.1 CDS BARBAKC583_0579 NC_008783.1 594267 594689 R identified by match to protein family HMM PF01230; histidine triad domain-containing protein complement(594267..594689) Bartonella bacilliformis KC583 4684028 YP_988890.1 CDS BARBAKC583_0581 NC_008783.1 594775 595239 R identified by match to protein family HMM PF01042; endoribonuclease L-PSP complement(594775..595239) Bartonella bacilliformis KC583 4684778 YP_988891.1 CDS BARBAKC583_0582 NC_008783.1 595376 596191 D identified by similarity to RF:YP_221870.1; match to protein family HMM PF08904; hypothetical protein 595376..596191 Bartonella bacilliformis KC583 4684337 YP_988892.1 CDS rpsB NC_008783.1 596350 597165 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 596350..597165 Bartonella bacilliformis KC583 4684891 YP_988893.1 CDS tsf NC_008783.1 597285 598208 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 597285..598208 Bartonella bacilliformis KC583 4685041 YP_988894.1 CDS pyrH NC_008783.1 598348 599067 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 598348..599067 Bartonella bacilliformis KC583 4683792 YP_988895.1 CDS frr NC_008783.1 599104 599664 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 599104..599664 Bartonella bacilliformis KC583 4684082 YP_988896.1 CDS cdsA NC_008783.1 600413 601231 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 600413..601231 Bartonella bacilliformis KC583 4684311 YP_988897.1 CDS BARBAKC583_0589 NC_008783.1 602564 604960 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08478; OMP85 family outer membrane protein 602564..604960 Bartonella bacilliformis KC583 4684864 YP_988898.1 CDS lpxD NC_008783.1 605027 606076 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 605027..606076 Bartonella bacilliformis KC583 4685057 YP_988899.1 CDS fabZ NC_008783.1 606078 606542 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 606078..606542 Bartonella bacilliformis KC583 4684695 YP_988900.1 CDS lpxA NC_008783.1 606568 607392 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 606568..607392 Bartonella bacilliformis KC583 4683938 YP_988901.1 CDS BARBAKC583_0593 NC_008783.1 607395 608267 D identified by similarity to RF:YP_221856.1; match to protein family HMM PF06230; hypothetical protein 607395..608267 Bartonella bacilliformis KC583 4684052 YP_988902.1 CDS lpxB NC_008783.1 608257 609441 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 608257..609441 Bartonella bacilliformis KC583 4684401 YP_988903.1 CDS BARBAKC583_0595 NC_008783.1 609473 610252 R identified by match to protein family HMM PF00005; amino acid ABC transporter, ATP-binding protein complement(609473..610252) Bartonella bacilliformis KC583 4684455 YP_988904.1 CDS BARBAKC583_0596 NC_008783.1 610332 611039 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter, permease protein complement(610332..611039) Bartonella bacilliformis KC583 4684733 YP_988905.1 CDS BARBAKC583_0597 NC_008783.1 611036 611758 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter, permease protein complement(611036..611758) Bartonella bacilliformis KC583 4684690 YP_988906.1 CDS BARBAKC583_0598 NC_008783.1 611817 612584 R identified by match to protein family HMM PF00497; amino acid ABC transporter, periplasmic amino acid-binding protein complement(611817..612584) Bartonella bacilliformis KC583 4685050 YP_988907.1 CDS gltA NC_008783.1 612955 614247 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(612955..614247) Bartonella bacilliformis KC583 4684152 YP_988908.1 CDS gltX NC_008783.1 614495 615925 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(614495..615925) Bartonella bacilliformis KC583 4684979 YP_988909.1 CDS BARBAKC583_0601 NC_008783.1 616042 618315 D identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; competence protein 616042..618315 Bartonella bacilliformis KC583 4683807 YP_988910.1 CDS rpiA NC_008783.1 618674 619375 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 618674..619375 Bartonella bacilliformis KC583 4684263 YP_988911.1 CDS BARBAKC583_0603 NC_008783.1 619437 619979 D hypothetical protein 619437..619979 Bartonella bacilliformis KC583 4683991 YP_988912.1 CDS gor NC_008783.1 620181 621566 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 620181..621566 Bartonella bacilliformis KC583 4684966 YP_988913.1 CDS BARBAKC583_0605 NC_008783.1 621641 623005 D identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase 621641..623005 Bartonella bacilliformis KC583 4684905 YP_988914.1 CDS nadE NC_008783.1 623117 624799 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 623117..624799 Bartonella bacilliformis KC583 4684286 YP_988915.1 CDS gltX2 NC_008783.1 624810 626180 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 624810..626180 Bartonella bacilliformis KC583 4684716 YP_988916.1 CDS BARBAKC583_0608 NC_008783.1 626256 627644 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase domain-containing protein complement(626256..627644) Bartonella bacilliformis KC583 4684354 YP_988917.1 CDS ppnK NC_008783.1 627797 628570 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(627797..628570) Bartonella bacilliformis KC583 4684314 YP_988918.1 CDS BARBAKC583_0612 NC_008783.1 629441 629803 R identified by match to protein family HMM PF00072; response regulator complement(629441..629803) Bartonella bacilliformis KC583 4684376 YP_988919.1 CDS BARBAKC583_0613 NC_008783.1 629983 630096 D hypothetical protein 629983..630096 Bartonella bacilliformis KC583 4684269 YP_988920.1 CDS BARBAKC583_0614 NC_008783.1 630537 631001 D identified by match to protein family HMM PF00011; Hsp20/alpha crystallin family protein 630537..631001 Bartonella bacilliformis KC583 4685119 YP_988921.1 CDS BARBAKC583_0616 NC_008783.1 631806 632165 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR01997; putative FeS assembly scaffold SufA 631806..632165 Bartonella bacilliformis KC583 4684225 YP_988922.1 CDS BARBAKC583_0617 NC_008783.1 632257 633162 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(632257..633162) Bartonella bacilliformis KC583 4684480 YP_988923.1 CDS BARBAKC583_0618 NC_008783.1 633193 634221 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-binding dehydrogenase family oxidoreductase complement(633193..634221) Bartonella bacilliformis KC583 4683942 YP_988924.1 CDS BARBAKC583_0619 NC_008783.1 634249 635547 R FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II complement(634249..635547) Bartonella bacilliformis KC583 4683861 YP_988925.1 CDS BARBAKC583_0620 NC_008783.1 635563 636132 R identified by similarity to RF:NP_770449.1; 3-oxoacyl-(ACP) synthase III complement(635563..636132) Bartonella bacilliformis KC583 4684408 YP_988926.1 CDS BARBAKC583_0621 NC_008783.1 636143 636427 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(636143..636427) Bartonella bacilliformis KC583 4684362 YP_988927.1 CDS dme NC_008783.1 636621 638954 R NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme complement(636621..638954) Bartonella bacilliformis KC583 4684533 YP_988928.1 CDS BARBAKC583_0623 NC_008783.1 639489 644120 R identified by similarity to RF:YP_032195.1; hypothetical protein complement(639489..644120) Bartonella bacilliformis KC583 4684680 YP_988929.1 CDS hfq NC_008783.1 644989 645228 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 644989..645228 Bartonella bacilliformis KC583 4684582 YP_988930.1 CDS hflX NC_008783.1 645286 646659 D identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156; GTP-binding proten HflX 645286..646659 Bartonella bacilliformis KC583 4684424 YP_988931.1 CDS BARBAKC583_0627 NC_008783.1 647530 648606 D identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein 647530..648606 Bartonella bacilliformis KC583 4684410 YP_988932.1 CDS argC NC_008783.1 648627 649562 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(648627..649562) Bartonella bacilliformis KC583 4684795 YP_988933.1 CDS glyA NC_008783.1 649870 651168 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 649870..651168 Bartonella bacilliformis KC583 4683891 YP_988934.1 CDS nrdR NC_008783.1 651194 651676 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 651194..651676 Bartonella bacilliformis KC583 4685085 YP_988935.1 CDS ribD NC_008783.1 651669 652793 D identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 651669..652793 Bartonella bacilliformis KC583 4684435 YP_988936.1 CDS ribE NC_008783.1 652775 653392 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 652775..653392 Bartonella bacilliformis KC583 4684941 YP_988937.1 CDS ribH NC_008783.1 653477 653935 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 653477..653935 Bartonella bacilliformis KC583 4684624 YP_988938.1 CDS nusB NC_008783.1 653939 654403 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 653939..654403 Bartonella bacilliformis KC583 4683989 YP_988939.1 CDS BARBAKC583_0635 NC_008783.1 654480 654836 R identified by match to protein family HMM PF04355; SmpA/OmlA family outer membrane protein complement(654480..654836) Bartonella bacilliformis KC583 4684802 YP_988940.1 CDS BARBAKC583_0636 NC_008783.1 655163 655720 D hypothetical protein 655163..655720 Bartonella bacilliformis KC583 4684095 YP_988941.1 CDS plsX NC_008783.1 655867 656937 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 655867..656937 Bartonella bacilliformis KC583 4683911 YP_988942.1 CDS fabH NC_008783.1 656987 657961 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 656987..657961 Bartonella bacilliformis KC583 4684326 YP_988943.1 CDS ihfA NC_008783.1 658038 658349 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 658038..658349 Bartonella bacilliformis KC583 4684626 YP_988944.1 CDS BARBAKC583_0640 NC_008783.1 658534 659040 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 658534..659040 Bartonella bacilliformis KC583 4684754 YP_988945.1 CDS thrS NC_008783.1 659071 661047 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(659071..661047) Bartonella bacilliformis KC583 4684002 YP_988946.1 CDS BARBAKC583_0642 NC_008783.1 661172 661525 R identified by similarity to SP:Q8YH92; match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein complement(661172..661525) Bartonella bacilliformis KC583 4684458 YP_988947.1 CDS BARBAKC583_0643 NC_008783.1 661518 661955 R identified by similarity to RF:YP_570374.1; hypothetical protein complement(661518..661955) Bartonella bacilliformis KC583 4684076 YP_988948.1 CDS folE NC_008783.1 662083 662703 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 662083..662703 Bartonella bacilliformis KC583 4684210 YP_988949.1 CDS BARBAKC583_0646 NC_008783.1 663087 664298 D identified by similarity to RF:YP_033582.1; match to protein family HMM PF05990; putative lipoprotein 663087..664298 Bartonella bacilliformis KC583 4683973 YP_988950.1 CDS BARBAKC583_0647 NC_008783.1 664431 664955 D hypothetical protein 664431..664955 Bartonella bacilliformis KC583 4684826 YP_988951.1 CDS BARBAKC583_0648 NC_008783.1 665209 667128 R homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:NP_711581.1; match to protein family HMM PF07598; hypothetical protein complement(665209..667128) Bartonella bacilliformis KC583 4683835 YP_988952.1 CDS BARBAKC583_0651 NC_008783.1 668413 669087 D identified by match to protein family HMM PF01135; putative protein-L-isoaspartate O-methyltransferase 668413..669087 Bartonella bacilliformis KC583 4684235 YP_988953.1 CDS BARBAKC583_0652 NC_008783.1 669141 670427 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein 669141..670427 Bartonella bacilliformis KC583 4684174 YP_988954.1 CDS BARBAKC583_0653 NC_008783.1 670610 671185 D identified by similarity to GB:CAC46094.1; hypothetical protein 670610..671185 Bartonella bacilliformis KC583 4684047 YP_988955.1 CDS valS NC_008783.1 671349 674075 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 671349..674075 Bartonella bacilliformis KC583 4684261 YP_988956.1 CDS gltL1 NC_008783.1 674643 675377 R identified by similarity to SP:P0AAG3; match to protein family HMM PF00005; glutamate/aspartate ABC transporter, ATP-binding protein complement(674643..675377) Bartonella bacilliformis KC583 4684422 YP_988957.1 CDS gltK1 NC_008783.1 675401 676117 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter, permease protein GltK complement(675401..676117) Bartonella bacilliformis KC583 4684989 YP_988958.1 CDS gltJ1 NC_008783.1 676119 676871 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter, permease protein GltJ complement(676119..676871) Bartonella bacilliformis KC583 4684399 YP_988959.1 CDS BARBAKC583_0658 NC_008783.1 677017 678399 R identified by similarity to SP:P37902; match to protein family HMM TIGR01726; putative glutamate/aspartate ABC transporter, permease protein/periplasmic glutamate/aspartate-binding protein complement(677017..678399) Bartonella bacilliformis KC583 4684182 YP_988960.1 CDS gltI1 NC_008783.1 678545 679453 R identified by similarity to SP:P37902; match to protein family HMM PF00497; glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein complement(678545..679453) Bartonella bacilliformis KC583 4684622 YP_988961.1 CDS xth2 NC_008783.1 679571 680362 R identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(679571..680362) Bartonella bacilliformis KC583 4684714 YP_988962.1 CDS rpsL NC_008783.1 680844 681215 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 680844..681215 Bartonella bacilliformis KC583 4684705 YP_988963.1 CDS rpsG1 NC_008783.1 681247 681717 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 681247..681717 Bartonella bacilliformis KC583 4684254 YP_988964.1 CDS fusA1 NC_008783.1 681747 683831 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 681747..683831 Bartonella bacilliformis KC583 4684058 YP_988965.1 CDS tuf2 NC_008783.1 683896 685071 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 683896..685071 Bartonella bacilliformis KC583 4683994 YP_988966.1 CDS rpsJ1 NC_008783.1 685140 685448 D identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; ribosomal protein S10 685140..685448 Bartonella bacilliformis KC583 4683928 YP_988967.1 CDS rplC NC_008783.1 685476 686216 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 685476..686216 Bartonella bacilliformis KC583 4684859 YP_988968.1 CDS rplD NC_008783.1 686216 686836 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 686216..686836 Bartonella bacilliformis KC583 4683931 YP_988969.1 CDS rplW NC_008783.1 686833 687126 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 686833..687126 Bartonella bacilliformis KC583 4685151 YP_988970.1 CDS rplB NC_008783.1 687141 687974 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 687141..687974 Bartonella bacilliformis KC583 4683901 YP_988971.1 CDS rpsS NC_008783.1 687990 688268 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 687990..688268 Bartonella bacilliformis KC583 4684226 YP_988972.1 CDS rplV NC_008783.1 688271 688660 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 688271..688660 Bartonella bacilliformis KC583 4684039 YP_988973.1 CDS rpsC NC_008783.1 688660 689370 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 688660..689370 Bartonella bacilliformis KC583 4684975 YP_988974.1 CDS rplP NC_008783.1 689407 689820 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 689407..689820 Bartonella bacilliformis KC583 4685140 YP_988975.1 CDS rpmC1 NC_008783.1 689833 690033 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 689833..690033 Bartonella bacilliformis KC583 4684230 YP_988976.1 CDS rpsQ NC_008783.1 690045 690287 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 690045..690287 Bartonella bacilliformis KC583 4684423 YP_988977.1 CDS rplN NC_008783.1 690436 690804 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 690436..690804 Bartonella bacilliformis KC583 4684430 YP_988978.1 CDS rplX NC_008783.1 690817 691131 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 690817..691131 Bartonella bacilliformis KC583 4685137 YP_988979.1 CDS rplE1 NC_008783.1 691124 691504 D identified by match to protein family HMM PF00281; ribosomal protein L5 691124..691504 Bartonella bacilliformis KC583 4684285 YP_988980.1 CDS BARBAKC583_0679 NC_008783.1 691542 692051 D hypothetical protein 691542..692051 Bartonella bacilliformis KC583 4683844 YP_988981.1 CDS BARBAKC583_0680 NC_008783.1 692184 692708 D hypothetical protein 692184..692708 Bartonella bacilliformis KC583 4684994 YP_988982.1 CDS BARBAKC583_0681 NC_008783.1 692962 694881 R homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:NP_711581.1; match to protein family HMM PF07598; hypothetical protein complement(692962..694881) Bartonella bacilliformis KC583 4683963 YP_988983.1 CDS BARBAKC583_0684 NC_008783.1 696166 696840 D identified by match to protein family HMM PF01135; putative protein-L-isoaspartate O-methyltransferase 696166..696840 Bartonella bacilliformis KC583 4683981 YP_988984.1 CDS BARBAKC583_0685 NC_008783.1 696894 698111 D identified by similarity to GB:CAD13188.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein 696894..698111 Bartonella bacilliformis KC583 4683860 YP_988985.1 CDS BARBAKC583_0686 NC_008783.1 698294 698869 D hypothetical protein 698294..698869 Bartonella bacilliformis KC583 4684741 YP_988986.1 CDS valS NC_008783.1 699033 701759 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 699033..701759 Bartonella bacilliformis KC583 4684620 YP_988987.1 CDS gltL2 NC_008783.1 702327 703061 R identified by similarity to SP:P0AAG3; match to protein family HMM PF00005; glutamate/aspartate ABC transporter, ATP-binding protein complement(702327..703061) Bartonella bacilliformis KC583 4684004 YP_988988.1 CDS gltK2 NC_008783.1 703085 703801 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter, permease protein GltK complement(703085..703801) Bartonella bacilliformis KC583 4684857 YP_988989.1 CDS gltJ2 NC_008783.1 703803 704555 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter, permease protein GltJ complement(703803..704555) Bartonella bacilliformis KC583 4684561 YP_988990.1 CDS gltI2 NC_008783.1 704701 705609 R identified by similarity to SP:P37902; match to protein family HMM PF00497; glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein complement(704701..705609) Bartonella bacilliformis KC583 4683919 YP_988991.1 CDS xth3 NC_008783.1 705727 706518 R identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(705727..706518) Bartonella bacilliformis KC583 4685066 YP_988992.1 CDS rpsL NC_008783.1 707000 707371 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 707000..707371 Bartonella bacilliformis KC583 4685099 YP_988993.1 CDS rpsG2 NC_008783.1 707403 707873 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 707403..707873 Bartonella bacilliformis KC583 4684329 YP_988994.1 CDS fusA2 NC_008783.1 707903 709987 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 707903..709987 Bartonella bacilliformis KC583 4684639 YP_988995.1 CDS tuf3 NC_008783.1 710052 711227 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 710052..711227 Bartonella bacilliformis KC583 4684260 YP_988996.1 CDS rpsJ2 NC_008783.1 711296 711604 D identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; ribosomal protein S10 711296..711604 Bartonella bacilliformis KC583 4684585 YP_988997.1 CDS rplC NC_008783.1 711632 712372 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 711632..712372 Bartonella bacilliformis KC583 4685002 YP_988998.1 CDS rplD NC_008783.1 712372 712992 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 712372..712992 Bartonella bacilliformis KC583 4683847 YP_988999.1 CDS rplW NC_008783.1 712989 713282 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 712989..713282 Bartonella bacilliformis KC583 4684497 YP_989000.1 CDS rplB NC_008783.1 713297 714130 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 713297..714130 Bartonella bacilliformis KC583 4684739 YP_989001.1 CDS rpsS NC_008783.1 714146 714424 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 714146..714424 Bartonella bacilliformis KC583 4684999 YP_989002.1 CDS rplV NC_008783.1 714427 714816 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 714427..714816 Bartonella bacilliformis KC583 4684656 YP_989003.1 CDS rpsC NC_008783.1 714816 715526 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 714816..715526 Bartonella bacilliformis KC583 4684780 YP_989004.1 CDS rplP NC_008783.1 715563 715976 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 715563..715976 Bartonella bacilliformis KC583 4683874 YP_989005.1 CDS rpmC2 NC_008783.1 715989 716189 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 715989..716189 Bartonella bacilliformis KC583 4684610 YP_989006.1 CDS rpsQ NC_008783.1 716201 716443 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 716201..716443 Bartonella bacilliformis KC583 4684078 YP_989007.1 CDS rplN NC_008783.1 716592 716960 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 716592..716960 Bartonella bacilliformis KC583 4684654 YP_989008.1 CDS rplX NC_008783.1 716973 717287 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 716973..717287 Bartonella bacilliformis KC583 4683832 YP_989009.1 CDS rplE NC_008783.1 717280 717837 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 717280..717837 Bartonella bacilliformis KC583 4684251 YP_989010.1 CDS rpsN NC_008783.1 717862 718167 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 717862..718167 Bartonella bacilliformis KC583 4684418 YP_989011.1 CDS rpsH NC_008783.1 718182 718580 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 718182..718580 Bartonella bacilliformis KC583 4684532 YP_989012.1 CDS rplF NC_008783.1 718619 719152 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 718619..719152 Bartonella bacilliformis KC583 4684544 YP_989013.1 CDS rplR NC_008783.1 719165 719527 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 719165..719527 Bartonella bacilliformis KC583 4684777 YP_989014.1 CDS rpsE NC_008783.1 719639 720208 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 719639..720208 Bartonella bacilliformis KC583 4685080 YP_989015.1 CDS rpmD NC_008783.1 720241 720447 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 720241..720447 Bartonella bacilliformis KC583 4684338 YP_989016.1 CDS rplO NC_008783.1 720475 720939 D late assembly protein; 50S ribosomal protein L15 720475..720939 Bartonella bacilliformis KC583 4684606 YP_989017.1 CDS secY NC_008783.1 721068 722414 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 721068..722414 Bartonella bacilliformis KC583 4683855 YP_989018.1 CDS adk NC_008783.1 722411 722989 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 722411..722989 Bartonella bacilliformis KC583 4685062 YP_989019.1 CDS rpsM NC_008783.1 723176 723544 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 723176..723544 Bartonella bacilliformis KC583 4685133 YP_989020.1 CDS rpsK NC_008783.1 723667 724056 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 723667..724056 Bartonella bacilliformis KC583 4684554 YP_989021.1 CDS rpoA NC_008783.1 724147 725160 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 724147..725160 Bartonella bacilliformis KC583 4684123 YP_989022.1 CDS rplQ NC_008783.1 725185 725610 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 725185..725610 Bartonella bacilliformis KC583 4683795 YP_989023.1 CDS BARBAKC583_0724 NC_008783.1 725791 727185 D identified by similarity to SP:P26982; match to protein family HMM PF00089; match to protein family HMM TIGR02037; putative protease do 725791..727185 Bartonella bacilliformis KC583 4685048 YP_989024.1 CDS BARBAKC583_0726 NC_008783.1 727195 728514 D identified by match to protein family HMM PF00004; recombination factor protein RarA 727195..728514 Bartonella bacilliformis KC583 4684036 YP_989025.1 CDS BARBAKC583_0725 NC_008783.1 728485 728847 R hypothetical protein complement(728485..728847) Bartonella bacilliformis KC583 4684717 YP_989026.1 CDS recA NC_008783.1 728971 730014 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 728971..730014 Bartonella bacilliformis KC583 4684583 YP_989027.1 CDS alaS NC_008783.1 730206 732866 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 730206..732866 Bartonella bacilliformis KC583 4684786 YP_989028.1 CDS ndvA NC_008783.1 732964 734751 R responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA; cyclic beta-1,2-glucan ABC transporter complement(732964..734751) Bartonella bacilliformis KC583 4685040 YP_989029.1 CDS BARBAKC583_0730 NC_008783.1 734949 735932 D identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 734949..735932 Bartonella bacilliformis KC583 4684952 YP_989030.1 CDS BARBAKC583_0731 NC_008783.1 736321 737106 D identified by match to protein family HMM PF07542; ATP12 chaperone family protein 736321..737106 Bartonella bacilliformis KC583 4684981 YP_989031.1 CDS BARBAKC583_0732 NC_008783.1 737136 737681 R identified by similarity to RF:YP_033802.1; hypothetical protein complement(737136..737681) Bartonella bacilliformis KC583 4684102 YP_989032.1 CDS glnA NC_008783.1 737835 739244 R identified by similarity to SP:Q59747; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I complement(737835..739244) Bartonella bacilliformis KC583 4684584 YP_989033.1 CDS uvrA NC_008783.1 739902 742796 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(739902..742796) Bartonella bacilliformis KC583 4684755 YP_989034.1 CDS ssb NC_008783.1 742995 743528 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein 742995..743528 Bartonella bacilliformis KC583 4684428 YP_989035.1 CDS gyrA NC_008783.1 744012 746798 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 744012..746798 Bartonella bacilliformis KC583 4684890 YP_989036.1 CDS coaD NC_008783.1 746801 747310 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 746801..747310 Bartonella bacilliformis KC583 4685071 YP_989037.1 CDS BARBAKC583_0739 NC_008783.1 747325 747900 D identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 747325..747900 Bartonella bacilliformis KC583 4683797 YP_989038.1 CDS BARBAKC583_0740 NC_008783.1 747917 748429 D identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase, cyclophilin-type 747917..748429 Bartonella bacilliformis KC583 4685079 YP_989039.1 CDS tgt NC_008783.1 748730 749863 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 748730..749863 Bartonella bacilliformis KC583 4684609 YP_989040.1 CDS BARBAKC583_0742 NC_008783.1 750669 752093 R identified by match to protein family HMM PF07690; major facilitator transporter complement(750669..752093) Bartonella bacilliformis KC583 4684148 YP_989041.1 CDS BARBAKC583_0743 NC_008783.1 752211 753425 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(752211..753425) Bartonella bacilliformis KC583 4684644 YP_989042.1 CDS BARBAKC583_0744 NC_008783.1 753707 754348 D hypothetical protein 753707..754348 Bartonella bacilliformis KC583 4684466 YP_989043.1 CDS glpX NC_008783.1 755316 756305 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 755316..756305 Bartonella bacilliformis KC583 4684238 YP_989044.1 CDS ilvE NC_008783.1 756404 757510 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(756404..757510) Bartonella bacilliformis KC583 4684171 YP_989045.1 CDS BARBAKC583_0748 NC_008783.1 758037 760544 R identified by match to protein family HMM PF05036; sporulation and cell division repeat-containing protein complement(758037..760544) Bartonella bacilliformis KC583 4685011 YP_989046.1 CDS argS NC_008783.1 760680 762437 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(760680..762437) Bartonella bacilliformis KC583 4684762 YP_989047.1 CDS BARBAKC583_0750 NC_008783.1 762468 763664 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(762468..763664) Bartonella bacilliformis KC583 4684128 YP_989048.1 CDS BARBAKC583_0751 NC_008783.1 763771 764094 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 763771..764094 Bartonella bacilliformis KC583 4683975 YP_989049.1 CDS BARBAKC583_0752 NC_008783.1 764155 765117 D identified by similarity to RF:NP_102613.1; hypothetical protein 764155..765117 Bartonella bacilliformis KC583 4685125 YP_989050.1 CDS BARBAKC583_0753 NC_008783.1 765167 765919 D identified by similarity to SP:P45706; match to protein family HMM PF02683; putative cytochrome c-type biogenesis protein 765167..765919 Bartonella bacilliformis KC583 4684204 YP_989051.1 CDS glmU NC_008783.1 765970 767319 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 765970..767319 Bartonella bacilliformis KC583 4684118 YP_989052.1 CDS glmS NC_008783.1 767497 769320 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 767497..769320 Bartonella bacilliformis KC583 4684027 YP_989053.1 CDS recG NC_008783.1 769544 771652 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(769544..771652) Bartonella bacilliformis KC583 4684358 YP_989054.1 CDS BARBAKC583_0757 NC_008783.1 771789 773549 R identified by similarity to GB:CAA40813.1; match to protein family HMM PF00583; match to protein family HMM PF02784; putative microcin immunity protein complement(771789..773549) Bartonella bacilliformis KC583 4684563 YP_989055.1 CDS BARBAKC583_0758 NC_008783.1 773945 775885 R homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:YP_000623.1; match to protein family HMM PF07598; hypothetical protein complement(773945..775885) Bartonella bacilliformis KC583 4683940 YP_989056.1 CDS BARBAKC583_0759 NC_008783.1 776209 776322 D hypothetical protein 776209..776322 Bartonella bacilliformis KC583 4684925 YP_989057.1 CDS accC NC_008783.1 776689 778029 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(776689..778029) Bartonella bacilliformis KC583 4683997 YP_989058.1 CDS accB NC_008783.1 778044 778526 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(778044..778526) Bartonella bacilliformis KC583 4684287 YP_989059.1 CDS BARBAKC583_0763 NC_008783.1 778743 779540 R identified by match to protein family HMM PF01323; thioredoxin domain-containing protein complement(778743..779540) Bartonella bacilliformis KC583 4684085 YP_989060.1 CDS purN NC_008783.1 779961 780572 R identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase complement(779961..780572) Bartonella bacilliformis KC583 4684719 YP_989061.1 CDS purM NC_008783.1 780569 781654 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(780569..781654) Bartonella bacilliformis KC583 4684708 YP_989062.1 CDS BARBAKC583_0766 NC_008783.1 781822 783036 D identified by match to protein family HMM PF01594; hypothetical protein 781822..783036 Bartonella bacilliformis KC583 4684197 YP_989063.1 CDS BARBAKC583_0767 NC_008783.1 783033 783722 D identified by similarity to RF:YP_032365.1; hypothetical protein 783033..783722 Bartonella bacilliformis KC583 4684947 YP_989064.1 CDS BARBAKC583_0769 NC_008783.1 784228 784533 D identified by similarity to SP:Q02375; match to protein family HMM PF04800; putative NADH dehydrogenase (quinone) subunit 784228..784533 Bartonella bacilliformis KC583 4684229 YP_989065.1 CDS BARBAKC583_0771 NC_008783.1 784918 785190 R hypothetical protein complement(784918..785190) Bartonella bacilliformis KC583 4684048 YP_989066.1 CDS BARBAKC583_0772 NC_008783.1 785717 785842 D hypothetical protein 785717..785842 Bartonella bacilliformis KC583 4684321 YP_989067.1 CDS BARBAKC583_0773 NC_008783.1 785873 786094 D hypothetical protein 785873..786094 Bartonella bacilliformis KC583 4684283 YP_989068.1 CDS BARBAKC583_0774 NC_008783.1 786307 788241 R homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:YP_002272.1; match to protein family HMM PF07598; hypothetical protein complement(786307..788241) Bartonella bacilliformis KC583 4685016 YP_989069.1 CDS BARBAKC583_0775 NC_008783.1 788548 788670 D hypothetical protein 788548..788670 Bartonella bacilliformis KC583 4683804 YP_989070.1 CDS nuoA NC_008783.1 789462 789827 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 789462..789827 Bartonella bacilliformis KC583 4684395 YP_989071.1 CDS nuoB NC_008783.1 789818 790399 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 789818..790399 Bartonella bacilliformis KC583 4685033 YP_989072.1 CDS nuoC NC_008783.1 790409 791026 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 790409..791026 Bartonella bacilliformis KC583 4684667 YP_989073.1 CDS nuoD NC_008783.1 791112 792302 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 791112..792302 Bartonella bacilliformis KC583 4684043 YP_989074.1 CDS nuoE NC_008783.1 792302 792979 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 792302..792979 Bartonella bacilliformis KC583 4684301 YP_989075.1 CDS nuoF NC_008783.1 793123 794430 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 793123..794430 Bartonella bacilliformis KC583 4684429 YP_989076.1 CDS nuoG NC_008783.1 794495 796564 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 794495..796564 Bartonella bacilliformis KC583 4685120 YP_989077.1 CDS nuoH NC_008783.1 796589 797635 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 796589..797635 Bartonella bacilliformis KC583 4685028 YP_989078.1 CDS nuoI NC_008783.1 797649 798140 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 797649..798140 Bartonella bacilliformis KC583 4684970 YP_989079.1 CDS nuoJ NC_008783.1 798237 798857 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 798237..798857 Bartonella bacilliformis KC583 4684948 YP_989080.1 CDS nuoK NC_008783.1 798871 799179 D identified by similarity to SP:P50940; match to protein family HMM PF00420; NADH dehydrogenase (quinone), K subunit 798871..799179 Bartonella bacilliformis KC583 4683946 YP_989081.1 CDS nuoL NC_008783.1 799186 801150 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 799186..801150 Bartonella bacilliformis KC583 4684096 YP_989082.1 CDS nuoM NC_008783.1 801150 802619 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 801150..802619 Bartonella bacilliformis KC583 4684679 YP_989083.1 CDS nuoN NC_008783.1 802632 804095 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 802632..804095 Bartonella bacilliformis KC583 4684334 YP_989084.1 CDS BARBAKC583_0792 NC_008783.1 804102 804902 D identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin-[acetyl-CoA-carboxylase] ligase 804102..804902 Bartonella bacilliformis KC583 4684127 YP_989085.1 CDS BARBAKC583_0793 NC_008783.1 804952 806628 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; putative RNA-metabolising metallo-beta-lactamase 804952..806628 Bartonella bacilliformis KC583 4684456 YP_989086.1 CDS proS NC_008783.1 806863 808188 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 806863..808188 Bartonella bacilliformis KC583 4684547 YP_989087.1 CDS BARBAKC583_0795 NC_008783.1 808200 809468 D identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212; ABC transporter, permease protein 808200..809468 Bartonella bacilliformis KC583 4684105 YP_989088.1 CDS BARBAKC583_0796 NC_008783.1 809468 810148 D identified by match to protein family HMM PF00005; ABC transporter, ATP-binding protein 809468..810148 Bartonella bacilliformis KC583 4684157 YP_989089.1 CDS BARBAKC583_0797 NC_008783.1 810225 810518 D identified by similarity to RF:YP_032238.1; match to protein family HMM PF03937; hypothetical protein 810225..810518 Bartonella bacilliformis KC583 4683885 YP_989090.1 CDS mfd NC_008783.1 810524 814015 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 810524..814015 Bartonella bacilliformis KC583 4684969 YP_989091.1 CDS BARBAKC583_0800 NC_008783.1 816192 816806 D identified by match to protein family HMM PF06776; invasion associated locus B family protein 816192..816806 Bartonella bacilliformis KC583 4684837 YP_989092.1 CDS BARBAKC583_0802 NC_008783.1 820035 821273 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-l-alanine amidase family protein 820035..821273 Bartonella bacilliformis KC583 4684796 YP_989093.1 CDS BARBAKC583_0803 NC_008783.1 821436 823907 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein, 1A 821436..823907 Bartonella bacilliformis KC583 4684293 YP_989094.1 CDS prfB NC_008783.1 824125 825256 D catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 join(824125..824193,824195..825256) Bartonella bacilliformis KC583 4684521 YP_989095.1 CDS BARBAKC583_0805 NC_008783.1 825372 825845 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein complement(825372..825845) Bartonella bacilliformis KC583 4684501 YP_989096.1 CDS tyrS NC_008783.1 825929 827182 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(825929..827182) Bartonella bacilliformis KC583 4684342 YP_989097.1 CDS BARBAKC583_0807 NC_008783.1 827288 827401 R hypothetical protein complement(827288..827401) Bartonella bacilliformis KC583 4683856 YP_989098.1 CDS BARBAKC583_0808 NC_008783.1 827553 828260 R hypothetical protein complement(827553..828260) Bartonella bacilliformis KC583 4684438 YP_989099.1 CDS BARBAKC583_0809 NC_008783.1 828438 829586 D identified by match to protein family HMM PF00266; aminotransferase, class V 828438..829586 Bartonella bacilliformis KC583 4685096 YP_989100.1 CDS sufB NC_008783.1 829744 831255 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 829744..831255 Bartonella bacilliformis KC583 4684341 YP_989101.1 CDS sufC NC_008783.1 831314 832069 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 831314..832069 Bartonella bacilliformis KC583 4684842 YP_989102.1 CDS sufD NC_008783.1 832087 833352 D identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 832087..833352 Bartonella bacilliformis KC583 4684978 YP_989103.1 CDS sufS NC_008783.1 833362 834606 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; cysteine desulfurase SufS 833362..834606 Bartonella bacilliformis KC583 4684811 YP_989104.1 CDS BARBAKC583_0814 NC_008783.1 834599 835000 D identified by match to protein family HMM PF01883; match to protein family HMM TIGR02945; FeS assembly SUF system protein 834599..835000 Bartonella bacilliformis KC583 4684425 YP_989105.1 CDS BARBAKC583_0816 NC_008783.1 835542 836756 R identified by match to protein family HMM PF01494; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(835542..836756) Bartonella bacilliformis KC583 4683980 YP_989106.1 CDS pcs NC_008783.1 836940 837701 D identified by similarity to SP:Q9KJY8; match to protein family HMM PF01066; phosphatidylcholine synthase 836940..837701 Bartonella bacilliformis KC583 4684928 YP_989107.1 CDS BARBAKC583_0818 NC_008783.1 837809 838624 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(837809..838624) Bartonella bacilliformis KC583 4684793 YP_989108.1 CDS BARBAKC583_0819 NC_008783.1 838635 839408 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase complement(838635..839408) Bartonella bacilliformis KC583 4685056 YP_989109.1 CDS metG NC_008783.1 839398 840957 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(839398..840957) Bartonella bacilliformis KC583 4685149 YP_989110.1 CDS holB NC_008783.1 841031 842074 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(841031..842074) Bartonella bacilliformis KC583 4684093 YP_989111.1 CDS tmk NC_008783.1 842071 842712 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(842071..842712) Bartonella bacilliformis KC583 4685087 YP_989112.1 CDS BARBAKC583_0823 NC_008783.1 842986 843831 R identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A complement(842986..843831) Bartonella bacilliformis KC583 4684158 YP_989113.1 CDS BARBAKC583_0825 NC_008783.1 844700 845536 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(844700..845536) Bartonella bacilliformis KC583 4684556 YP_989114.1 CDS rpsD NC_008783.1 845801 846418 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(845801..846418) Bartonella bacilliformis KC583 4684347 YP_989115.1 CDS murI NC_008783.1 846598 847413 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(846598..847413) Bartonella bacilliformis KC583 4684317 YP_989116.1 CDS BARBAKC583_0828 NC_008783.1 847413 848240 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase complement(847413..848240) Bartonella bacilliformis KC583 4683892 YP_989117.1 CDS map NC_008783.1 848590 849420 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 848590..849420 Bartonella bacilliformis KC583 4684602 YP_989118.1 CDS BARBAKC583_0830 NC_008783.1 849438 850235 D identified by similarity to SP:P65956; match to protein family HMM PF04002; match to protein family HMM TIGR00608; RadC family DNA repair protein 849438..850235 Bartonella bacilliformis KC583 4685112 YP_989119.1 CDS BARBAKC583_0831 NC_008783.1 850283 850495 R hypothetical protein complement(850283..850495) Bartonella bacilliformis KC583 4684759 YP_989120.1 CDS BARBAKC583_0832 NC_008783.1 850662 851435 R identified by match to protein family HMM PF00561; hydrolase, alpha/beta fold family protein complement(850662..851435) Bartonella bacilliformis KC583 4684340 YP_989121.1 CDS BARBAKC583_0833 NC_008783.1 851439 851936 R identified by match to protein family HMM PF02643; hypothetical protein complement(851439..851936) Bartonella bacilliformis KC583 4684646 YP_989122.1 CDS BARBAKC583_0834 NC_008783.1 852038 852577 R identified by match to protein family HMM PF00313; cold-shock DNA-binding family protein complement(852038..852577) Bartonella bacilliformis KC583 4684956 YP_989123.1 CDS gatA NC_008783.1 853164 854648 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(853164..854648) Bartonella bacilliformis KC583 4683790 YP_989124.1 CDS gatC NC_008783.1 854679 854966 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(854679..854966) Bartonella bacilliformis KC583 4684472 YP_989125.1 CDS BARBAKC583_0838 NC_008783.1 855133 855618 D identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 855133..855618 Bartonella bacilliformis KC583 4684412 YP_989126.1 CDS BARBAKC583_0837 NC_008783.1 855603 857228 R identified by match to protein family HMM PF00441; acyl-CoA dehydrogenase family protein complement(855603..857228) Bartonella bacilliformis KC583 4683808 YP_989127.1 CDS pyrB NC_008783.1 857353 858318 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 857353..858318 Bartonella bacilliformis KC583 4685106 YP_989128.1 CDS BARBAKC583_0840 NC_008783.1 858315 859610 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 858315..859610 Bartonella bacilliformis KC583 4684701 YP_989129.1 CDS BARBAKC583_0841 NC_008783.1 859628 860263 D identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 859628..860263 Bartonella bacilliformis KC583 4684769 YP_989130.1 CDS dprA NC_008783.1 860256 861446 D identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 860256..861446 Bartonella bacilliformis KC583 4684222 YP_989131.1 CDS topA NC_008783.1 861827 864436 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 861827..864436 Bartonella bacilliformis KC583 4684328 YP_989132.1 CDS rnr NC_008783.1 864619 866664 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 864619..866664 Bartonella bacilliformis KC583 4684514 YP_989133.1 CDS BARBAKC583_0845 NC_008783.1 866944 867144 D hypothetical protein 866944..867144 Bartonella bacilliformis KC583 4684150 YP_989134.1 CDS rpmG NC_008783.1 868208 868375 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 868208..868375 Bartonella bacilliformis KC583 4683848 YP_989135.1 CDS BARBAKC583_0848 NC_008783.1 868907 869461 D identified by match to protein family HMM PF00565; nuclease-like protein 868907..869461 Bartonella bacilliformis KC583 4684651 YP_989136.1 CDS BARBAKC583_0849 NC_008783.1 869508 870143 D identified by similarity to RF:YP_032293.1; hypothetical protein 869508..870143 Bartonella bacilliformis KC583 4684385 YP_989137.1 CDS grp NC_008783.1 870164 870643 D identified by similarity to SP:P74996; match to protein family HMM PF01037; glutamate uptake regulatory protein Grp 870164..870643 Bartonella bacilliformis KC583 4684377 YP_989138.1 CDS cobT NC_008783.1 870687 871691 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(870687..871691) Bartonella bacilliformis KC583 4684653 YP_989139.1 CDS dusA NC_008783.1 872024 873004 R identified by similarity to SP:P32695; match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A complement(872024..873004) Bartonella bacilliformis KC583 4684217 YP_989140.1 CDS BARBAKC583_0853 NC_008783.1 873371 875908 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08448; sensor histidine kinase/reponse regulator complement(873371..875908) Bartonella bacilliformis KC583 4684166 YP_989141.1 CDS BARBAKC583_0854 NC_008783.1 876134 876655 D hypothetical protein 876134..876655 Bartonella bacilliformis KC583 4684531 YP_989142.1 CDS BARBAKC583_0855 NC_008783.1 877063 877572 R identified by match to protein family HMM PF01613; flavin reductase family protein complement(877063..877572) Bartonella bacilliformis KC583 4684462 YP_989143.1 CDS rpe NC_008783.1 877742 878434 D identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 877742..878434 Bartonella bacilliformis KC583 4684900 YP_989144.1 CDS purB NC_008783.1 878431 879735 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 878431..879735 Bartonella bacilliformis KC583 4684576 YP_989145.1 CDS BARBAKC583_0858 NC_008783.1 879814 880362 D identified by match to protein family HMM PF06821; alpha/beta fold family hydrolase 879814..880362 Bartonella bacilliformis KC583 4684022 YP_989146.1 CDS purC NC_008783.1 880545 881312 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 880545..881312 Bartonella bacilliformis KC583 4684030 YP_989147.1 CDS purS NC_008783.1 881386 881625 D identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 881386..881625 Bartonella bacilliformis KC583 4685021 YP_989148.1 CDS purQ NC_008783.1 881638 882306 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 881638..882306 Bartonella bacilliformis KC583 4684064 YP_989149.1 CDS BARBAKC583_0862 NC_008783.1 882409 882528 R hypothetical protein complement(882409..882528) Bartonella bacilliformis KC583 4684409 YP_989150.1 CDS purL NC_008783.1 882527 884740 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 882527..884740 Bartonella bacilliformis KC583 4684564 YP_989151.1 CDS BARBAKC583_0864 NC_008783.1 884807 885040 D identified by match to protein family HMM PF01722; BolA family protein 884807..885040 Bartonella bacilliformis KC583 4684500 YP_989152.1 CDS BARBAKC583_0865 NC_008783.1 885139 885471 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 885139..885471 Bartonella bacilliformis KC583 4684421 YP_989153.1 CDS BARBAKC583_0866 NC_008783.1 885545 886798 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 885545..886798 Bartonella bacilliformis KC583 4684294 YP_989154.1 CDS parC NC_008783.1 886907 889144 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(886907..889144) Bartonella bacilliformis KC583 4684170 YP_989155.1 CDS aspS NC_008783.1 889349 891139 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(889349..891139) Bartonella bacilliformis KC583 4685154 YP_989156.1 CDS rnd NC_008783.1 891278 892453 D identified by match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D 891278..892453 Bartonella bacilliformis KC583 4684631 YP_989157.1 CDS BARBAKC583_0870 NC_008783.1 892864 893112 D hypothetical protein 892864..893112 Bartonella bacilliformis KC583 4684678 YP_989158.1 CDS BARBAKC583_0871 NC_008783.1 893145 894413 D catalyzes the formation of catechol from salicylate; salicylate hydroxylase 893145..894413 Bartonella bacilliformis KC583 4683806 YP_989159.1 CDS dnaE NC_008783.1 894474 897959 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(894474..897959) Bartonella bacilliformis KC583 4684597 YP_989160.1 CDS BARBAKC583_0873 NC_008783.1 898839 900755 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:YP_002272.1; match to protein family HMM PF07598; hypothetical protein 898839..900755 Bartonella bacilliformis KC583 4684343 YP_989161.1 CDS BARBAKC583_0874 NC_008783.1 901154 902569 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase domain-containing protein complement(901154..902569) Bartonella bacilliformis KC583 4684520 YP_989162.1 CDS BARBAKC583_0875 NC_008783.1 902722 903240 R hypothetical protein complement(902722..903240) Bartonella bacilliformis KC583 4684775 YP_989163.1 CDS BARBAKC583_0877 NC_008783.1 904448 904822 D hypothetical protein 904448..904822 Bartonella bacilliformis KC583 4683996 YP_989164.1 CDS secDF NC_008783.1 904896 907400 D part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 904896..907400 Bartonella bacilliformis KC583 4684180 YP_989165.1 CDS BARBAKC583_0879 NC_008783.1 908112 909065 D hypothetical protein 908112..909065 Bartonella bacilliformis KC583 4684855 YP_989166.1 CDS BARBAKC583_0880 NC_008783.1 909304 910887 R identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741; integral membrane protein complement(909304..910887) Bartonella bacilliformis KC583 4684486 YP_989167.1 CDS BARBAKC583_0881 NC_008783.1 911128 911253 D hypothetical protein 911128..911253 Bartonella bacilliformis KC583 4684781 YP_989168.1 CDS BARBAKC583_0883 NC_008783.1 911815 911937 R hypothetical protein complement(911815..911937) Bartonella bacilliformis KC583 4684228 YP_989169.1 CDS BARBAKC583_0884 NC_008783.1 911984 912148 D hypothetical protein 911984..912148 Bartonella bacilliformis KC583 4684940 YP_989170.1 CDS BARBAKC583_0885 NC_008783.1 912360 912476 R hypothetical protein complement(912360..912476) Bartonella bacilliformis KC583 4684199 YP_989171.1 CDS BARBAKC583_0886 NC_008783.1 913077 913202 D hypothetical protein 913077..913202 Bartonella bacilliformis KC583 4685009 YP_989172.1 CDS BARBAKC583_0888 NC_008783.1 913970 915907 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:YP_000623.1; match to protein family HMM PF07598; hypothetical protein 913970..915907 Bartonella bacilliformis KC583 4683793 YP_989173.1 CDS BARBAKC583_0887 NC_008783.1 915870 916010 R hypothetical protein complement(915870..916010) Bartonella bacilliformis KC583 4684638 YP_989174.1 CDS BARBAKC583_0889 NC_008783.1 916019 916147 R hypothetical protein complement(916019..916147) Bartonella bacilliformis KC583 4683800 YP_989175.1 CDS BARBAKC583_0890 NC_008783.1 916272 918221 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:YP_002272.1; match to protein family HMM PF07598; hypothetical protein 916272..918221 Bartonella bacilliformis KC583 4684637 YP_989176.1 CDS BARBAKC583_0891 NC_008783.1 918392 919630 R identified by similarity to RF:NP_522057.1; hypothetical protein complement(918392..919630) Bartonella bacilliformis KC583 4684068 YP_989177.1 CDS BARBAKC583_0892 NC_008783.1 919649 920335 R hypothetical protein complement(919649..920335) Bartonella bacilliformis KC583 4684035 YP_989178.1 CDS BARBAKC583_0893 NC_008783.1 920434 920595 D hypothetical protein 920434..920595 Bartonella bacilliformis KC583 4684591 YP_989179.1 CDS BARBAKC583_0894 NC_008783.1 920779 921966 D identified by similarity to RF:NP_522061.1; hypothetical protein 920779..921966 Bartonella bacilliformis KC583 4684389 YP_989180.1 CDS BARBAKC583_0895 NC_008783.1 921960 923168 D identified by match to protein family HMM PF07690; major facilitator transporter 921960..923168 Bartonella bacilliformis KC583 4683858 YP_989181.1 CDS BARBAKC583_0896 NC_008783.1 923603 924247 D identified by match to protein family HMM PF04011; LemA family protein 923603..924247 Bartonella bacilliformis KC583 4683995 YP_989182.1 CDS BARBAKC583_0897 NC_008783.1 924247 925101 D identified by match to protein family HMM PF04536; hypothetical protein 924247..925101 Bartonella bacilliformis KC583 4684574 YP_989183.1 CDS lipB NC_008783.1 925323 926048 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 925323..926048 Bartonella bacilliformis KC583 4684821 YP_989184.1 CDS parE NC_008783.1 926128 928206 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 926128..928206 Bartonella bacilliformis KC583 4684565 YP_989185.1 CDS recJ NC_008783.1 928224 930008 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(928224..930008) Bartonella bacilliformis KC583 4683893 YP_989186.1 CDS rplM NC_008783.1 930296 930760 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 930296..930760 Bartonella bacilliformis KC583 4684888 YP_989187.1 CDS rpsI NC_008783.1 930763 931248 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 930763..931248 Bartonella bacilliformis KC583 4683910 YP_989188.1 CDS divK NC_008783.1 931408 931773 R identified by similarity to GB:AAA82214.1; match to protein family HMM PF00072; cell division response regulator DivK complement(931408..931773) Bartonella bacilliformis KC583 4684474 YP_989189.1 CDS BARBAKC583_0904 NC_008783.1 932336 933100 R identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase family protein complement(932336..933100) Bartonella bacilliformis KC583 4684106 YP_989190.1 CDS BARBAKC583_0905 NC_008783.1 933288 933443 D hypothetical protein 933288..933443 Bartonella bacilliformis KC583 4684682 YP_989191.1 CDS BARBAKC583_0906 NC_008783.1 933899 934180 R hypothetical protein complement(933899..934180) Bartonella bacilliformis KC583 4684552 YP_989192.1 CDS BARBAKC583_0907 NC_008783.1 934315 934461 D hypothetical protein 934315..934461 Bartonella bacilliformis KC583 4683845 YP_989193.1 CDS BARBAKC583_0909 NC_008783.1 935013 935279 R hypothetical protein complement(935013..935279) Bartonella bacilliformis KC583 4684108 YP_989194.1 CDS BARBAKC583_0910 NC_008783.1 935038 935325 D identified by similarity to SP:P22884; putative integrase 935038..935325 Bartonella bacilliformis KC583 4684178 YP_989195.1 CDS BARBAKC583_0912 NC_008783.1 936236 940015 R identified by similarity to GB:AAU44778.1; match to protein family HMM PF05658; match to protein family HMM PF05662; adhesin/hemagglutinin complement(936236..940015) Bartonella bacilliformis KC583 4684388 YP_989196.1 CDS BARBAKC583_0913 NC_008783.1 940042 940161 R hypothetical protein complement(940042..940161) Bartonella bacilliformis KC583 4683937 YP_989197.1 CDS BARBAKC583_0914 NC_008783.1 940492 940635 D hypothetical protein 940492..940635 Bartonella bacilliformis KC583 4684614 YP_989198.1 CDS BARBAKC583_0915 NC_008783.1 940822 940944 R hypothetical protein complement(940822..940944) Bartonella bacilliformis KC583 4685094 YP_989199.1 CDS cycA NC_008783.1 941025 942425 D identified by similarity to SP:P0AAE0; match to protein family HMM PF00324; D-serine/D-alanine/glycine transporter 941025..942425 Bartonella bacilliformis KC583 4684946 YP_989200.1 CDS ilvC NC_008783.1 942499 943518 R identified by match to protein family HMM PF01450; match to protein family HMM PF07991; match to protein family HMM TIGR00465; ketol-acid reductoisomerase complement(942499..943518) Bartonella bacilliformis KC583 4683917 YP_989201.1 CDS BARBAKC583_0918 NC_008783.1 944210 944944 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(944210..944944) Bartonella bacilliformis KC583 4685017 YP_989202.1 CDS BARBAKC583_0919 NC_008783.1 945025 946134 R hypothetical protein complement(945025..946134) Bartonella bacilliformis KC583 4684345 YP_989203.1 CDS BARBAKC583_0921 NC_008783.1 947443 947712 D hypothetical protein 947443..947712 Bartonella bacilliformis KC583 4684088 YP_989204.1 CDS BARBAKC583_0922 NC_008783.1 947859 949349 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease Do family protein complement(947859..949349) Bartonella bacilliformis KC583 4683853 YP_989205.1 CDS BARBAKC583_0923 NC_008783.1 949572 950444 R identified by match to protein family HMM PF01145; putative HflC protein complement(949572..950444) Bartonella bacilliformis KC583 4684233 YP_989206.1 CDS hflK NC_008783.1 950447 951589 R identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933; HflK protein complement(950447..951589) Bartonella bacilliformis KC583 4684281 YP_989207.1 CDS folA NC_008783.1 951709 952218 R identified by match to protein family HMM PF00186; dihydrofolate reductase complement(951709..952218) Bartonella bacilliformis KC583 4684465 YP_989208.1 CDS thyA NC_008783.1 952215 953009 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(952215..953009) Bartonella bacilliformis KC583 4684801 YP_989209.1 CDS kgtP NC_008783.1 953222 954529 D identified by similarity to SP:P0AEX3; match to protein family HMM PF00083; match to protein family HMM PF07690; alpha-ketoglutarate permease 953222..954529 Bartonella bacilliformis KC583 4684613 YP_989210.1 CDS BARBAKC583_0928 NC_008783.1 954621 954926 R identified by similarity to RF:YP_033877.1; hypothetical protein complement(954621..954926) Bartonella bacilliformis KC583 4684634 YP_989211.1 CDS BARBAKC583_0930 NC_008783.1 955540 956073 D identified by similarity to RF:YP_033878.1; match to protein family HMM PF07031; hypothetical protein 955540..956073 Bartonella bacilliformis KC583 4683962 YP_989212.1 CDS BARBAKC583_0931 NC_008783.1 956084 956266 D identified by similarity to RF:YP_033879.1; hypothetical protein 956084..956266 Bartonella bacilliformis KC583 4684508 YP_989213.1 CDS BARBAKC583_0932 NC_008783.1 956624 959074 D identified by match to protein family HMM PF00580; putative DNA helicase II 956624..959074 Bartonella bacilliformis KC583 4684307 YP_989214.1 CDS BARBAKC583_0933 NC_008783.1 959137 959766 R identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase complement(959137..959766) Bartonella bacilliformis KC583 4684437 YP_989215.1 CDS BARBAKC583_0934 NC_008783.1 959998 960576 D identified by match to protein family HMM PF02630; SCO1/SenC family protein 959998..960576 Bartonella bacilliformis KC583 4684698 YP_989216.1 CDS prmA NC_008783.1 960603 961478 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 960603..961478 Bartonella bacilliformis KC583 4685138 YP_989217.1 CDS BARBAKC583_0936 NC_008783.1 961496 963319 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family peptidase 961496..963319 Bartonella bacilliformis KC583 4684877 YP_989218.1 CDS ligA NC_008783.1 963536 965689 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(963536..965689) Bartonella bacilliformis KC583 4684723 YP_989219.1 CDS recN NC_008783.1 965805 967472 R identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN complement(965805..967472) Bartonella bacilliformis KC583 4684954 YP_989220.1 CDS BARBAKC583_0939 NC_008783.1 967479 968318 R putative lipoprotein complement(967479..968318) Bartonella bacilliformis KC583 4684120 YP_989221.1 CDS lpxC NC_008783.1 968542 969408 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(968542..969408) Bartonella bacilliformis KC583 4685019 YP_989222.1 CDS ftsZ NC_008783.1 969629 971407 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(969629..971407) Bartonella bacilliformis KC583 4684833 YP_989223.1 CDS ftsA NC_008783.1 971477 972775 R identified by similarity to GB:AAP32281.1; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(971477..972775) Bartonella bacilliformis KC583 4684084 YP_989224.1 CDS ftsQ NC_008783.1 972775 973701 R identified by similarity to SP:Q9X5H9; match to protein family HMM PF03799; match to protein family HMM PF08478; cell division protein FtsQ complement(972775..973701) Bartonella bacilliformis KC583 4683951 YP_989225.1 CDS ddl NC_008783.1 973668 974588 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(973668..974588) Bartonella bacilliformis KC583 4684804 YP_989226.1 CDS murB NC_008783.1 974816 975790 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(974816..975790) Bartonella bacilliformis KC583 4684962 YP_989227.1 CDS murC NC_008783.1 975771 977198 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(975771..977198) Bartonella bacilliformis KC583 4684115 YP_989228.1 CDS murG NC_008783.1 977182 978318 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(977182..978318) Bartonella bacilliformis KC583 4683834 YP_989229.1 CDS ftsW NC_008783.1 978308 979468 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell division protein FtsW complement(978308..979468) Bartonella bacilliformis KC583 4684828 YP_989230.1 CDS murD NC_008783.1 979588 980994 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(979588..980994) Bartonella bacilliformis KC583 4685013 YP_989231.1 CDS mraY NC_008783.1 980999 982069 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(980999..982069) Bartonella bacilliformis KC583 4684086 YP_989232.1 CDS murF NC_008783.1 982091 983509 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(982091..983509) Bartonella bacilliformis KC583 4684728 YP_989233.1 CDS murE NC_008783.1 983506 984957 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(983506..984957) Bartonella bacilliformis KC583 4684958 YP_989234.1 CDS BARBAKC583_0953 NC_008783.1 984991 986709 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; putative penicillin binding protein complement(984991..986709) Bartonella bacilliformis KC583 4683859 YP_989235.1 CDS BARBAKC583_0954 NC_008783.1 986709 987113 R identified by similarity to RF:YP_033903.1; hypothetical protein complement(986709..987113) Bartonella bacilliformis KC583 4684001 YP_989236.1 CDS mraW NC_008783.1 987113 988108 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(987113..988108) Bartonella bacilliformis KC583 4683907 YP_989237.1 CDS BARBAKC583_0957 NC_008783.1 989206 989565 R identified by similarity to RF:YP_032508.1; hypothetical protein complement(989206..989565) Bartonella bacilliformis KC583 4684696 YP_989238.1 CDS BARBAKC583_0958 NC_008783.1 989890 990048 D hypothetical protein 989890..990048 Bartonella bacilliformis KC583 4684875 YP_989239.1 CDS BARBAKC583_0959 NC_008783.1 990532 992181 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(990532..992181) Bartonella bacilliformis KC583 4683867 YP_989240.1 CDS BARBAKC583_0960 NC_008783.1 992741 993349 D identified by match to protein family HMM PF00857; isochorismatase family protein 992741..993349 Bartonella bacilliformis KC583 4684460 YP_989241.1 CDS BARBAKC583_0961 NC_008783.1 993395 994447 R identified by match to protein family HMM PF04332; hypothetical protein complement(993395..994447) Bartonella bacilliformis KC583 4684475 YP_989242.1 CDS BARBAKC583_0962 NC_008783.1 994765 995304 D identified by match to protein family HMM PF01381; DNA-binding protein 994765..995304 Bartonella bacilliformis KC583 4683936 YP_989243.1 CDS BARBAKC583_0963 NC_008783.1 995669 995848 D identified by similarity to RF:YP_032514.1; hypothetical protein 995669..995848 Bartonella bacilliformis KC583 4685046 YP_989244.1 CDS bp26 NC_008783.1 996256 997002 D identified by similarity to GB:AAO39773.1; match to protein family HMM PF04402; 26 kDa periplasmic immunogenic protein 996256..997002 Bartonella bacilliformis KC583 4683952 YP_989245.1 CDS rpoD NC_008783.1 997353 999353 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(997353..999353) Bartonella bacilliformis KC583 4684277 YP_989246.1 CDS dnaG NC_008783.1 999691 1001631 R synthesizes RNA primers at the replication forks; DNA primase complement(999691..1001631) Bartonella bacilliformis KC583 4684493 YP_989247.1 CDS BARBAKC583_0968 NC_008783.1 1001761 1002972 D identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 1001761..1002972 Bartonella bacilliformis KC583 4684440 YP_989248.1 CDS BARBAKC583_0969 NC_008783.1 1003044 1004732 D identified by match to protein family HMM PF02690; Na+/Pi-cotransporter family protein 1003044..1004732 Bartonella bacilliformis KC583 4684057 YP_989249.1 CDS BARBAKC583_0970 NC_008783.1 1004873 1005124 D identified by similarity to RF:YP_032521.1; match to protein family HMM PF04226; hypothetical protein 1004873..1005124 Bartonella bacilliformis KC583 4684248 YP_989250.1 CDS ubiC NC_008783.1 1005477 1005992 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 1005477..1005992 Bartonella bacilliformis KC583 4684707 YP_989251.1 CDS carA NC_008783.1 1006764 1007963 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1006764..1007963 Bartonella bacilliformis KC583 4684054 YP_989252.1 CDS BARBAKC583_0973 NC_008783.1 1008129 1009349 R identified by match to protein family HMM PF07690; major facilitator transporter complement(1008129..1009349) Bartonella bacilliformis KC583 4684007 YP_989253.1 CDS BARBAKC583_0974 NC_008783.1 1009842 1010072 R hypothetical protein complement(1009842..1010072) Bartonella bacilliformis KC583 4684396 YP_989254.1 CDS carB NC_008783.1 1010350 1013835 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1010350..1013835 Bartonella bacilliformis KC583 4685034 YP_989255.1 CDS BARBAKC583_0976 NC_008783.1 1013905 1014054 R hypothetical protein complement(1013905..1014054) Bartonella bacilliformis KC583 4683865 YP_989256.1 CDS BARBAKC583_0977 NC_008783.1 1014087 1014296 D identified by match to protein family HMM PF00313; cold-shock DNA-binding family protein 1014087..1014296 Bartonella bacilliformis KC583 4685098 YP_989257.1 CDS aatA NC_008783.1 1014729 1015931 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1014729..1015931 Bartonella bacilliformis KC583 4685042 YP_989258.1 CDS BARBAKC583_0978 NC_008783.1 1015904 1016020 R hypothetical protein complement(1015904..1016020) Bartonella bacilliformis KC583 4684074 YP_989259.1 CDS BARBAKC583_0980 NC_008783.1 1016669 1017574 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1016669..1017574) Bartonella bacilliformis KC583 4684886 YP_989260.1 CDS trxB NC_008783.1 1017626 1018579 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(1017626..1018579) Bartonella bacilliformis KC583 4683923 YP_989261.1 CDS BARBAKC583_0982 NC_008783.1 1018872 1020272 D identified by similarity to GB:BAA31229.1; match to protein family HMM PF02386; putative potassium uptake protein 1018872..1020272 Bartonella bacilliformis KC583 4683836 YP_989262.1 CDS lpcC NC_008783.1 1020472 1021530 R identified by similarity to SP:O68547; match to protein family HMM PF00534; lipopolysaccharide core biosynthesis mannosyltransferase lpcC complement(1020472..1021530) Bartonella bacilliformis KC583 4684218 YP_989263.1 CDS greA NC_008783.1 1021537 1022010 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1021537..1022010) Bartonella bacilliformis KC583 4684208 YP_989264.1 CDS uvrB NC_008783.1 1022885 1025227 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1022885..1025227 Bartonella bacilliformis KC583 4684509 YP_989265.1 CDS BARBAKC583_0987 NC_008783.1 1025694 1026212 D identified by similarity to RF:NP_698511.1; hypothetical protein 1025694..1026212 Bartonella bacilliformis KC583 4683961 YP_989266.1 CDS BARBAKC583_0988 NC_008783.1 1026261 1026905 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(1026261..1026905) Bartonella bacilliformis KC583 4684885 YP_989267.1 CDS BARBAKC583_0989 NC_008783.1 1027055 1027759 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1027055..1027759 Bartonella bacilliformis KC583 4683796 YP_989268.1 CDS BARBAKC583_0990 NC_008783.1 1027767 1029107 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1027767..1029107 Bartonella bacilliformis KC583 4683868 YP_989269.1 CDS BARBAKC583_0991 NC_008783.1 1029160 1029660 R identified by similarity to RF:YP_032023.1; match to protein family HMM PF08749; hypothetical protein complement(1029160..1029660) Bartonella bacilliformis KC583 4684459 YP_989270.1 CDS BARBAKC583_0992 NC_008783.1 1029858 1029974 R hypothetical protein complement(1029858..1029974) Bartonella bacilliformis KC583 4684126 YP_989271.1 CDS BARBAKC583_0993 NC_008783.1 1030041 1030307 R identified by similarity to RF:YP_033943.1; match to protein family HMM PF04380; hypothetical protein complement(1030041..1030307) Bartonella bacilliformis KC583 4684241 YP_989272.1 CDS lgt NC_008783.1 1030572 1031429 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1030572..1031429 Bartonella bacilliformis KC583 4684852 YP_989273.1 CDS BARBAKC583_0995 NC_008783.1 1031429 1032529 D identified by match to protein family HMM PF02636; hypothetical protein 1031429..1032529 Bartonella bacilliformis KC583 4684059 YP_989274.1 CDS BARBAKC583_0996 NC_008783.1 1032588 1033379 D identified by similarity to RF:YP_032018.1; match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1032588..1033379 Bartonella bacilliformis KC583 4683948 YP_989275.1 CDS BARBAKC583_0997 NC_008783.1 1033602 1033721 R hypothetical protein complement(1033602..1033721) Bartonella bacilliformis KC583 4684270 YP_989276.1 CDS prs NC_008783.1 1033743 1034675 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1033743..1034675 Bartonella bacilliformis KC583 4684757 YP_989277.1 CDS BARBAKC583_0999 NC_008783.1 1035111 1035728 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1035111..1035728 Bartonella bacilliformis KC583 4684568 YP_989278.1 CDS pth NC_008783.1 1035808 1036389 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1035808..1036389 Bartonella bacilliformis KC583 4684689 YP_989279.1 CDS BARBAKC583_1001 NC_008783.1 1036557 1037255 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(1036557..1037255) Bartonella bacilliformis KC583 4683972 YP_989280.1 CDS engD NC_008783.1 1037508 1038611 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1037508..1038611 Bartonella bacilliformis KC583 4685010 YP_989281.1 CDS BARBAKC583_1003 NC_008783.1 1038766 1039209 R identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein complement(1038766..1039209) Bartonella bacilliformis KC583 4683945 YP_989282.1 CDS BARBAKC583_1004 NC_008783.1 1039420 1039566 D hypothetical protein 1039420..1039566 Bartonella bacilliformis KC583 4684921 YP_989283.1 CDS BARBAKC583_1005 NC_008783.1 1039663 1040130 D identified by match to protein family HMM PF00588; RNA methyltransferase 1039663..1040130 Bartonella bacilliformis KC583 4684862 YP_989284.1 CDS trnT NC_008783.1 1040148 1041401 R identified by similarity to SP:Q8K1J6; match to protein family HMM PF01743; tRNA-nucleotidyltransferase complement(1040148..1041401) Bartonella bacilliformis KC583 4684867 YP_989285.1 CDS BARBAKC583_1007 NC_008783.1 1041651 1042682 D identified by match to protein family HMM PF07726; match to protein family HMM PF07728; AAA family ATPase 1041651..1042682 Bartonella bacilliformis KC583 4685077 YP_989286.1 CDS BARBAKC583_1008 NC_008783.1 1042682 1043593 D identified by similarity to RF:YP_032538.1; hypothetical protein 1042682..1043593 Bartonella bacilliformis KC583 4683898 YP_989287.1 CDS BARBAKC583_1009 NC_008783.1 1043590 1046388 D identified by match to protein family HMM TIGR02226; hypothetical protein 1043590..1046388 Bartonella bacilliformis KC583 4683924 YP_989288.1 CDS BARBAKC583_1010 NC_008783.1 1046388 1048475 D identified by similarity to RF:YP_222236.1; match to protein family HMM PF07090; hypothetical protein 1046388..1048475 Bartonella bacilliformis KC583 4684706 YP_989289.1 CDS BARBAKC583_1011 NC_008783.1 1048542 1049099 R identified by match to protein family HMM PF00583; acetyltransferase, GNAT family protein complement(1048542..1049099) Bartonella bacilliformis KC583 4684464 YP_989290.1 CDS BARBAKC583_1012 NC_008783.1 1049371 1050255 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 1049371..1050255 Bartonella bacilliformis KC583 4684535 YP_989291.1 CDS czrB NC_008783.1 1050443 1051351 R identified by similarity to GB:CAC83722.1; match to protein family HMM PF01545; match to protein family HMM TIGR01297; metal cation efflux protein CzrB complement(1050443..1051351) Bartonella bacilliformis KC583 4684537 YP_989292.1 CDS BARBAKC583_1014 NC_008783.1 1051693 1051809 R hypothetical protein complement(1051693..1051809) Bartonella bacilliformis KC583 4685001 YP_989293.1 CDS BARBAKC583_1015 NC_008783.1 1052206 1053021 D identified by match to protein family HMM PF00588; RNA methyltransferase 1052206..1053021 Bartonella bacilliformis KC583 4684735 YP_989294.1 CDS mnmA NC_008783.1 1053119 1054294 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1053119..1054294) Bartonella bacilliformis KC583 4685086 YP_989295.1 CDS BARBAKC583_1017 NC_008783.1 1054547 1054822 D identified by similarity to RF:YP_032544.1; match to protein family HMM PF06627; hypothetical protein 1054547..1054822 Bartonella bacilliformis KC583 4684753 YP_989296.1 CDS BARBAKC583_1018 NC_008783.1 1054953 1055339 R hypothetical protein complement(1054953..1055339) Bartonella bacilliformis KC583 4684221 YP_989297.1 CDS ctrA NC_008783.1 1055898 1056599 D identified by similarity to SP:Q45994; match to protein family HMM PF00072; match to protein family HMM PF00486; cell cycle transcriptional regulator CtrA 1055898..1056599 Bartonella bacilliformis KC583 4684790 YP_989298.1 CDS BARBAKC583_1020 NC_008783.1 1056794 1057432 R identified by similarity to GB:CAC47299.1; hypothetical protein complement(1056794..1057432) Bartonella bacilliformis KC583 4684899 YP_989299.1 CDS BARBAKC583_1021 NC_008783.1 1057627 1058220 D identified by match to protein family HMM PF06577; hypothetical protein 1057627..1058220 Bartonella bacilliformis KC583 4684927 YP_989300.1 CDS BARBAKC583_1022 NC_008783.1 1058310 1058585 D hypothetical protein 1058310..1058585 Bartonella bacilliformis KC583 4684253 YP_989301.1 CDS BARBAKC583_1023 NC_008783.1 1058779 1059897 R identified by match to protein family HMM PF00202; match to protein family HMM PF01041; DegT/DnrJ/EryC1/StrS family aminotransferase complement(1058779..1059897) Bartonella bacilliformis KC583 4684764 YP_989302.1 CDS BARBAKC583_1024 NC_008783.1 1059948 1060901 R identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase complement(1059948..1060901) Bartonella bacilliformis KC583 4684443 YP_989303.1 CDS BARBAKC583_1026 NC_008783.1 1061750 1062532 R similarity to OppF; identified by similarity to GB:AAG22038.1; match to protein family HMM PF00005; dipeptide ABC transporter, ATP-binding protein complement(1061750..1062532) Bartonella bacilliformis KC583 4683992 YP_989304.1 CDS BARBAKC583_1027 NC_008783.1 1062529 1063404 R identified by match to protein family HMM PF00005; dipeptide ABC transporter, ATP-binding protein complement(1062529..1063404) Bartonella bacilliformis KC583 4684268 YP_989305.1 CDS BARBAKC583_1028 NC_008783.1 1063397 1064326 R similarity to DdpC; identified by similarity to SP:P77463; match to protein family HMM PF00528; dipeptide ABC transporter, permease protein complement(1063397..1064326) Bartonella bacilliformis KC583 4684647 YP_989306.1 CDS BARBAKC583_1029 NC_008783.1 1064329 1065402 R similarity to DdpB; identified by similarity to SP:P77308; match to protein family HMM PF00528; dipeptide ABC transporter, permease protein complement(1064329..1065402) Bartonella bacilliformis KC583 4685039 YP_989307.1 CDS BARBAKC583_1030 NC_008783.1 1065522 1067126 R identified by similarity to SP:P76128; match to protein family HMM PF00496; dipeptide ABC transporter, periplasmic dipeptide-binding protein complement(1065522..1067126) Bartonella bacilliformis KC583 4684032 YP_989308.1 CDS BARBAKC583_1031 NC_008783.1 1067361 1067474 R hypothetical protein complement(1067361..1067474) Bartonella bacilliformis KC583 4684513 YP_989309.1 CDS BARBAKC583_1033 NC_008783.1 1069409 1070011 R identified by match to protein family HMM PF03352; putative DNA-3-methyladenine glycosylase I complement(1069409..1070011) Bartonella bacilliformis KC583 4684374 YP_989310.1 CDS xseA NC_008783.1 1070013 1071443 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1070013..1071443) Bartonella bacilliformis KC583 4684427 YP_989311.1 CDS BARBAKC583_1035 NC_008783.1 1071809 1072084 D identified by similarity to RF:YP_033980.1; hypothetical protein 1071809..1072084 Bartonella bacilliformis KC583 4684616 YP_989312.1 CDS etfB NC_008783.1 1073177 1073929 D identified by similarity to SP:P53575; match to protein family HMM PF01012; electron transfer flavoprotein, beta subunit 1073177..1073929 Bartonella bacilliformis KC583 4684361 YP_989313.1 CDS etfA NC_008783.1 1073976 1074905 D identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein, alpha subunit 1073976..1074905 Bartonella bacilliformis KC583 4685018 YP_989314.1 CDS BARBAKC583_1039 NC_008783.1 1074909 1076570 D identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron transfer flavoprotein-ubiquinone dehydrogenase 1074909..1076570 Bartonella bacilliformis KC583 4684185 YP_989315.1 CDS flaA NC_008783.1 1076957 1078099 R identified by similarity to GB:CAB64773.1; match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin A complement(1076957..1078099) Bartonella bacilliformis KC583 4684133 YP_989316.1 CDS BARBAKC583_1041 NC_008783.1 1078241 1079020 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(1078241..1079020) Bartonella bacilliformis KC583 4684505 YP_989317.1 CDS BARBAKC583_1042 NC_008783.1 1079209 1079577 R identified by match to protein family HMM PF02021; hypothetical protein complement(1079209..1079577) Bartonella bacilliformis KC583 4684125 YP_989318.1 CDS BARBAKC583_1043 NC_008783.1 1079584 1080489 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase family protein complement(1079584..1080489) Bartonella bacilliformis KC583 4684275 YP_989319.1 CDS pyrF NC_008783.1 1080529 1081227 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1080529..1081227) Bartonella bacilliformis KC583 4684878 YP_989320.1 CDS BARBAKC583_1045 NC_008783.1 1081288 1082382 R identified by similarity to RF:NP_697099.1; match to protein family HMM PF01883; hypothetical protein complement(1081288..1082382) Bartonella bacilliformis KC583 4684366 YP_989321.1 CDS rpmH NC_008783.1 1082926 1083060 D identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; ribosomal protein L34 1082926..1083060 Bartonella bacilliformis KC583 4684538 YP_989322.1 CDS rnpA NC_008783.1 1083190 1083555 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 1083190..1083555 Bartonella bacilliformis KC583 4684668 YP_989323.1 CDS BARBAKC583_1048 NC_008783.1 1083572 1085410 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 1083572..1085410 Bartonella bacilliformis KC583 4684661 YP_989324.1 CDS engB NC_008783.1 1085407 1086054 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1085407..1086054 Bartonella bacilliformis KC583 4683887 YP_989325.1 CDS BARBAKC583_1050 NC_008783.1 1086191 1086883 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 1086191..1086883 Bartonella bacilliformis KC583 4684736 YP_989326.1 CDS dapB NC_008783.1 1087330 1088136 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1087330..1088136 Bartonella bacilliformis KC583 4684201 YP_989327.1 CDS gpmA NC_008783.1 1088162 1088782 D catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1088162..1088782 Bartonella bacilliformis KC583 4684320 YP_989328.1 CDS BARBAKC583_1054 NC_008783.1 1088896 1089009 D hypothetical protein 1088896..1089009 Bartonella bacilliformis KC583 4683974 YP_989329.1 CDS BARBAKC583_1055 NC_008783.1 1089585 1091438 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:NP_711583.1; match to protein family HMM PF07598; hypothetical protein 1089585..1091438 Bartonella bacilliformis KC583 4683965 YP_989330.1 CDS BARBAKC583_1057 NC_008783.1 1092027 1092689 R identified by match to protein family HMM PF00959; lysozyme complement(1092027..1092689) Bartonella bacilliformis KC583 4683920 YP_989331.1 CDS BARBAKC583_1059 NC_008783.1 1093447 1093908 D identified by similarity to RF:YP_485043.1; match to protein family HMM PF03681; hypothetical protein 1093447..1093908 Bartonella bacilliformis KC583 4684866 YP_989332.1 CDS BARBAKC583_1060 NC_008783.1 1093977 1094252 R hypothetical protein complement(1093977..1094252) Bartonella bacilliformis KC583 4684215 YP_989333.1 CDS BARBAKC583_1061 NC_008783.1 1094584 1094916 R identified by similarity to RF:YP_033747.1; hypothetical protein complement(1094584..1094916) Bartonella bacilliformis KC583 4684623 YP_989334.1 CDS BARBAKC583_1062 NC_008783.1 1094930 1095064 D hypothetical protein 1094930..1095064 Bartonella bacilliformis KC583 4684364 YP_989335.1 CDS BARBAKC583_1063 NC_008783.1 1095109 1095402 R hypothetical protein complement(1095109..1095402) Bartonella bacilliformis KC583 4684527 YP_989336.1 CDS BARBAKC583_1064 NC_008783.1 1095452 1095946 R hypothetical protein complement(1095452..1095946) Bartonella bacilliformis KC583 4684889 YP_989337.1 CDS BARBAKC583_1065 NC_008783.1 1095939 1096133 D hypothetical protein 1095939..1096133 Bartonella bacilliformis KC583 4685088 YP_989338.1 CDS BARBAKC583_1066 NC_008783.1 1096229 1096504 R identified by similarity to RF:YP_211601.1; hypothetical protein complement(1096229..1096504) Bartonella bacilliformis KC583 4684081 YP_989339.1 CDS BARBAKC583_1068 NC_008783.1 1097122 1097433 D identified by similarity to RF:YP_033517.1; hypothetical protein 1097122..1097433 Bartonella bacilliformis KC583 4685113 YP_989340.1 CDS BARBAKC583_1070 NC_008783.1 1098065 1098808 D identified by match to protein family HMM PF08346; AntA/AntB family antirepressor 1098065..1098808 Bartonella bacilliformis KC583 4684038 YP_989341.1 CDS BARBAKC583_1073 NC_008783.1 1100420 1100629 D identified by similarity to RF:YP_033508.1; hypothetical protein 1100420..1100629 Bartonella bacilliformis KC583 4684539 YP_989342.1 CDS BARBAKC583_1075 NC_008783.1 1100640 1100798 D hypothetical protein 1100640..1100798 Bartonella bacilliformis KC583 4683829 YP_989343.1 CDS BARBAKC583_1074 NC_008783.1 1100773 1100886 R hypothetical protein complement(1100773..1100886) Bartonella bacilliformis KC583 4684918 YP_989344.1 CDS int NC_008783.1 1100936 1101688 D identified by match to protein family HMM PF00589; integrase 1100936..1101688 Bartonella bacilliformis KC583 4684964 YP_989345.1 CDS BARBAKC583_1077 NC_008783.1 1101973 1103895 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:NP_713670.1; match to protein family HMM PF07598; hypothetical protein 1101973..1103895 Bartonella bacilliformis KC583 4684419 YP_989346.1 CDS BARBAKC583_1078 NC_008783.1 1104356 1106290 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:NP_710801.1; match to protein family HMM PF07598; hypothetical protein 1104356..1106290 Bartonella bacilliformis KC583 4684834 YP_989347.1 CDS BARBAKC583_1079 NC_008783.1 1106268 1106420 D hypothetical protein 1106268..1106420 Bartonella bacilliformis KC583 4684142 YP_989348.1 CDS BARBAKC583_1080 NC_008783.1 1106662 1107051 R hypothetical protein complement(1106662..1107051) Bartonella bacilliformis KC583 4684916 YP_989349.1 CDS BARBAKC583_1087 NC_008783.1 1114927 1115313 D putative transcriptional regulator 1114927..1115313 Bartonella bacilliformis KC583 4683954 YP_989350.1 CDS BARBAKC583_1088 NC_008783.1 1115432 1116538 D identified by match to protein family HMM PF00529; MFP family transporter 1115432..1116538 Bartonella bacilliformis KC583 4684400 YP_989351.1 CDS BARBAKC583_1089 NC_008783.1 1116549 1118126 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 1116549..1118126 Bartonella bacilliformis KC583 4684645 YP_989352.1 CDS BARBAKC583_1090 NC_008783.1 1118676 1119809 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; pyridoxal-dependent decarboxylase complement(1118676..1119809) Bartonella bacilliformis KC583 4685023 YP_989353.1 CDS BARBAKC583_1091 NC_008783.1 1120463 1121380 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(1120463..1121380) Bartonella bacilliformis KC583 4684237 YP_989354.1 CDS fpr NC_008783.1 1121666 1122496 R identified by similarity to SP:Q44532; match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin---NADP reductase complement(1121666..1122496) Bartonella bacilliformis KC583 4684063 YP_989355.1 CDS alr NC_008783.1 1123120 1124241 D identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 1123120..1124241 Bartonella bacilliformis KC583 4684847 YP_989356.1 CDS gcvP NC_008783.1 1124711 1127506 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1124711..1127506) Bartonella bacilliformis KC583 4684681 YP_989357.1 CDS gcvH NC_008783.1 1127512 1127880 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1127512..1127880) Bartonella bacilliformis KC583 4684348 YP_989358.1 CDS gcvT NC_008783.1 1127887 1129008 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1127887..1129008) Bartonella bacilliformis KC583 4684898 YP_989359.1 CDS BARBAKC583_1097 NC_008783.1 1129814 1130476 D identified by match to protein family HMM PF02190; ATP-dependent protease 1129814..1130476 Bartonella bacilliformis KC583 4684445 YP_989360.1 CDS BARBAKC583_1098 NC_008783.1 1130490 1130666 D identified by similarity to RF:YP_034024.1; match to protein family HMM PF03966; hypothetical protein 1130490..1130666 Bartonella bacilliformis KC583 4684420 YP_989361.1 CDS BARBAKC583_1099 NC_008783.1 1132553 1132708 D hypothetical protein 1132553..1132708 Bartonella bacilliformis KC583 4684578 YP_989362.1 CDS BARBAKC583_1100 NC_008783.1 1132722 1132895 D identified by match to protein family HMM PF03966; hypothetical protein 1132722..1132895 Bartonella bacilliformis KC583 4684070 YP_989363.1 CDS asd NC_008783.1 1135604 1136635 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1135604..1136635 Bartonella bacilliformis KC583 4684567 YP_989364.1 CDS metQ NC_008783.1 1137343 1138161 D identified by similarity to SP:P28635; match to protein family HMM PF03180; match to protein family HMM TIGR00363; D-methionine ABC transporter, periplasmic methionine-binding protein 1137343..1138161 Bartonella bacilliformis KC583 4685036 YP_989365.1 CDS metN NC_008783.1 1138168 1139202 D identified by match to protein family HMM PF00005; D-methionine ABC transporter, ATP-binding protein 1138168..1139202 Bartonella bacilliformis KC583 4685124 YP_989366.1 CDS metI NC_008783.1 1139195 1139854 D identified by match to protein family HMM PF00528; D-methionine ABC transporter, permease protein 1139195..1139854 Bartonella bacilliformis KC583 4684323 YP_989367.1 CDS nodN NC_008783.1 1139860 1140339 R identified by similarity to SP:P08634; match to protein family HMM PF01575; nodulation protein N complement(1139860..1140339) Bartonella bacilliformis KC583 4684766 YP_989368.1 CDS BARBAKC583_1106 NC_008783.1 1140509 1141834 D identified by match to protein family HMM PF01113; match to protein family HMM PF03447; match to protein family HMM PF08666; putative oxidoreductase, NAD-binding 1140509..1141834 Bartonella bacilliformis KC583 4684491 YP_989369.1 CDS BARBAKC583_1108 NC_008783.1 1142137 1142880 D identified by match to protein family HMM PF02633; creatininase 1142137..1142880 Bartonella bacilliformis KC583 4684863 YP_989370.1 CDS BARBAKC583_1107 NC_008783.1 1142853 1142996 R hypothetical protein complement(1142853..1142996) Bartonella bacilliformis KC583 4684258 YP_989371.1 CDS BARBAKC583_1109 NC_008783.1 1143225 1146806 R identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; outer membrane autotransporter complement(1143225..1146806) Bartonella bacilliformis KC583 4684792 YP_989372.1 CDS BARBAKC583_1110 NC_008783.1 1146935 1148845 R hypothetical protein complement(1146935..1148845) Bartonella bacilliformis KC583 4684771 YP_989373.1 CDS BARBAKC583_1111 NC_008783.1 1150047 1150970 D identified by match to protein family HMM PF01497; iron chelate ABC transporter, periplasmic iron-binding protein 1150047..1150970 Bartonella bacilliformis KC583 4684824 YP_989374.1 CDS BARBAKC583_1112 NC_008783.1 1151069 1152025 D identified by similarity to GB:CAA61301.1; match to protein family HMM PF01032; iron chelate ABC transporter, permease protein 1151069..1152025 Bartonella bacilliformis KC583 4684384 YP_989375.1 CDS BARBAKC583_1113 NC_008783.1 1152018 1152968 D identified by similarity to GB:CAA61302.1; match to protein family HMM PF01032; iron chelate ABC transporter, permease protein 1152018..1152968 Bartonella bacilliformis KC583 4685145 YP_989376.1 CDS BARBAKC583_1114 NC_008783.1 1152965 1153723 D identified by match to protein family HMM PF00005; iron chelate ABC transporter, ATP-binding protein 1152965..1153723 Bartonella bacilliformis KC583 4684132 YP_989377.1 CDS fliQ NC_008783.1 1154995 1155261 R FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar biosynthesis protein FliQ complement(1154995..1155261) Bartonella bacilliformis KC583 4684234 YP_989378.1 CDS flgD NC_008783.1 1155258 1155830 R identified by similarity to GB:AAB61250.1; match to protein family HMM PF03963; flagellar hook capping protein complement(1155258..1155830) Bartonella bacilliformis KC583 4684302 YP_989379.1 CDS flbT NC_008783.1 1155848 1156264 R post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT complement(1155848..1156264) Bartonella bacilliformis KC583 4684872 YP_989380.1 CDS flaF NC_008783.1 1156311 1156679 R acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis regulatory protein FlaF complement(1156311..1156679) Bartonella bacilliformis KC583 4684579 YP_989381.1 CDS flgL NC_008783.1 1156699 1157781 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar hook-associated protein FlgL complement(1156699..1157781) Bartonella bacilliformis KC583 4684512 YP_989382.1 CDS flgK NC_008783.1 1157789 1159159 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(1157789..1159159) Bartonella bacilliformis KC583 4684549 YP_989383.1 CDS flgE NC_008783.1 1159187 1160401 R identified by similarity to SP:P75937; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; flagellar hook protein FlgE complement(1159187..1160401) Bartonella bacilliformis KC583 4684188 YP_989384.1 CDS BARBAKC583_1123 NC_008783.1 1160642 1161328 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1160642..1161328) Bartonella bacilliformis KC583 4683869 YP_989385.1 CDS BARBAKC583_1124 NC_008783.1 1161608 1162180 R identified by match to protein family HMM PF01464; transglycosylase complement(1161608..1162180) Bartonella bacilliformis KC583 4685003 YP_989386.1 CDS BARBAKC583_1125 NC_008783.1 1162143 1163438 R identified by similarity to RF:YP_223813.1; putative flagellar motor protein complement(1162143..1163438) Bartonella bacilliformis KC583 4685068 YP_989387.1 CDS BARBAKC583_1126 NC_008783.1 1163435 1164805 R a periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation; chemotaxis protein complement(1163435..1164805) Bartonella bacilliformis KC583 4685083 YP_989388.1 CDS BARBAKC583_1127 NC_008783.1 1164887 1165960 R identified by similarity to GB:AAB81408.1; match to protein family HMM PF00691; putative flagellar motor protein MotB complement(1164887..1165960) Bartonella bacilliformis KC583 4684750 YP_989389.1 CDS BARBAKC583_1128 NC_008783.1 1165957 1166718 R hypothetical protein complement(1165957..1166718) Bartonella bacilliformis KC583 4684441 YP_989390.1 CDS fliF NC_008783.1 1166740 1168401 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(1166740..1168401) Bartonella bacilliformis KC583 4684292 YP_989391.1 CDS BARBAKC583_1130 NC_008783.1 1168521 1168640 D hypothetical protein 1168521..1168640 Bartonella bacilliformis KC583 4684492 YP_989392.1 CDS BARBAKC583_1132 NC_008783.1 1171893 1174370 D identified by match to protein family HMM TIGR01414; outer membrane autotransporter 1171893..1174370 Bartonella bacilliformis KC583 4684135 YP_989393.1 CDS BARBAKC583_1133 NC_008783.1 1174509 1177685 D identified by match to protein family HMM TIGR01414; outer membrane autotransporter 1174509..1177685 Bartonella bacilliformis KC583 4684965 YP_989394.1 CDS fliP NC_008783.1 1179074 1179817 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(1179074..1179817) Bartonella bacilliformis KC583 4684846 YP_989395.1 CDS fliL NC_008783.1 1179823 1180320 R identified by match to protein family HMM PF03748; flagellar basal body-associated protein FliL complement(1179823..1180320) Bartonella bacilliformis KC583 4684685 YP_989396.1 CDS flgH NC_008783.1 1180414 1181106 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(1180414..1181106) Bartonella bacilliformis KC583 4684203 YP_989397.1 CDS BARBAKC583_1138 NC_008783.1 1181171 1181935 R hypothetical protein complement(1181171..1181935) Bartonella bacilliformis KC583 4684830 YP_989398.1 CDS flgI NC_008783.1 1182004 1183242 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(1182004..1183242) Bartonella bacilliformis KC583 4684655 YP_989399.1 CDS flgA NC_008783.1 1183242 1183700 R required for the assembly of the flagellar basal body P-ring; Bradyrhizobium japonicum has two types of flagella, a single thick flagella and a few thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body P-ring biosynthesis protein FlgA complement(1183242..1183700) Bartonella bacilliformis KC583 4683987 YP_989400.1 CDS flgG NC_008783.1 1183706 1184500 R makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG complement(1183706..1184500) Bartonella bacilliformis KC583 4684042 YP_989401.1 CDS fliE NC_008783.1 1184552 1184884 R identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205; flagellar hook-basal body complex protein FliE complement(1184552..1184884) Bartonella bacilliformis KC583 4684008 YP_989402.1 CDS flgC NC_008783.1 1184961 1185374 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body rod protein FlgC complement(1184961..1185374) Bartonella bacilliformis KC583 4685118 YP_989403.1 CDS flgB NC_008783.1 1185377 1185763 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella; flagellar basal body rod protein FlgB complement(1185377..1185763) Bartonella bacilliformis KC583 4684987 YP_989404.1 CDS fliI NC_008783.1 1186171 1187784 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(1186171..1187784) Bartonella bacilliformis KC583 4684426 YP_989405.1 CDS BARBAKC583_1146 NC_008783.1 1187848 1188582 R identified by match to protein family HMM PF00460; putative flagellar basal-body rod protein FlgF complement(1187848..1188582) Bartonella bacilliformis KC583 4685043 YP_989406.1 CDS BARBAKC583_1147 NC_008783.1 1188641 1189435 R identified by match to protein family HMM PF06748; hypothetical protein complement(1188641..1189435) Bartonella bacilliformis KC583 4684984 YP_989407.1 CDS motA NC_008783.1 1189699 1190604 D identified by similarity to GB:AAF35850.1; lateral flagellar motor protein MotA 1189699..1190604 Bartonella bacilliformis KC583 4685114 YP_989408.1 CDS fliM NC_008783.1 1190607 1191578 D identified by similarity to GB:AAF35843.1; match to protein family HMM PF01052; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 1190607..1191578 Bartonella bacilliformis KC583 4684055 YP_989409.1 CDS BARBAKC583_1150 NC_008783.1 1191559 1192101 D identified by similarity to RF:YP_222930.1; hypothetical protein 1191559..1192101 Bartonella bacilliformis KC583 4684730 YP_989410.1 CDS fliY NC_008783.1 1192288 1192707 D identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480; flagellar motor switch protein fliY 1192288..1192707 Bartonella bacilliformis KC583 4684299 YP_989411.1 CDS fliG NC_008783.1 1192737 1193825 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1192737..1193825 Bartonella bacilliformis KC583 4684107 YP_989412.1 CDS flhB NC_008783.1 1193988 1195058 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1193988..1195058 Bartonella bacilliformis KC583 4684411 YP_989413.1 CDS BARBAKC583_1154 NC_008783.1 1195165 1195647 D identified by similarity to RF:NP_104130.1; hypothetical protein 1195165..1195647 Bartonella bacilliformis KC583 4683827 YP_989414.1 CDS BARBAKC583_1155 NC_008783.1 1196147 1196617 R identified by similarity to RF:YP_223799.1; hypothetical protein complement(1196147..1196617) Bartonella bacilliformis KC583 4684788 YP_989415.1 CDS BARBAKC583_1156 NC_008783.1 1196614 1197057 R identified by similarity to RF:YP_032612.1; hypothetical protein complement(1196614..1197057) Bartonella bacilliformis KC583 4684761 YP_989416.1 CDS BARBAKC583_1157 NC_008783.1 1197169 1197750 R identified by similarity to RF:YP_223801.1; hypothetical protein complement(1197169..1197750) Bartonella bacilliformis KC583 4684687 YP_989417.1 CDS BARBAKC583_1158 NC_008783.1 1198208 1198594 R hypothetical protein complement(1198208..1198594) Bartonella bacilliformis KC583 4684010 YP_989418.1 CDS fliR NC_008783.1 1198598 1199395 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium has one thick and several thin flagella; the Bradyrhizobium protein in this cluster are associated with the thin flagella; flagellar biosynthesis protein FliR complement(1198598..1199395) Bartonella bacilliformis KC583 4684267 YP_989419.1 CDS flhA NC_008783.1 1199410 1201494 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(1199410..1201494) Bartonella bacilliformis KC583 4684360 YP_989420.1 CDS BARBAKC583_1161 NC_008783.1 1201958 1202071 D hypothetical protein 1201958..1202071 Bartonella bacilliformis KC583 4684013 YP_989421.1 CDS BARBAKC583_1162 NC_008783.1 1202354 1202683 D identified by similarity to RF:YP_032614.1; match to protein family HMM PF04273; match to protein family HMM TIGR01244; hypothetical protein 1202354..1202683 Bartonella bacilliformis KC583 4684114 YP_989422.1 CDS BARBAKC583_1164 NC_008783.1 1202776 1202943 D hypothetical protein 1202776..1202943 Bartonella bacilliformis KC583 4684264 YP_989423.1 CDS ribF NC_008783.1 1202927 1203919 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(1202927..1203919) Bartonella bacilliformis KC583 4684310 YP_989424.1 CDS BARBAKC583_1165 NC_008783.1 1203919 1204764 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460; HAD family hydrolase complement(1203919..1204764) Bartonella bacilliformis KC583 4684995 YP_989425.1 CDS mviN NC_008783.1 1205531 1207093 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1205531..1207093 Bartonella bacilliformis KC583 4684331 YP_989426.1 CDS trpS NC_008783.1 1207175 1208245 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1207175..1208245 Bartonella bacilliformis KC583 4684587 YP_989427.1 CDS BARBAKC583_1168 NC_008783.1 1208673 1208789 R hypothetical protein complement(1208673..1208789) Bartonella bacilliformis KC583 4684671 YP_989428.1 CDS BARBAKC583_1170 NC_008783.1 1210533 1211111 D identified by match to protein family HMM PF01106; match to protein family HMM PF08712; NifU family protein 1210533..1211111 Bartonella bacilliformis KC583 4684506 YP_989429.1 CDS BARBAKC583_1171 NC_008783.1 1211525 1211647 R hypothetical protein complement(1211525..1211647) Bartonella bacilliformis KC583 4684722 YP_989430.1 CDS groEL NC_008783.1 1211789 1213423 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1211789..1213423) Bartonella bacilliformis KC583 4683978 YP_989431.1 CDS groES NC_008783.1 1213479 1213775 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1213479..1213775) Bartonella bacilliformis KC583 4684737 YP_989432.1 CDS fumC NC_008783.1 1214058 1215446 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1214058..1215446 Bartonella bacilliformis KC583 4684207 YP_989433.1 CDS BARBAKC583_1175 NC_008783.1 1215491 1217119 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(1215491..1217119) Bartonella bacilliformis KC583 4685044 YP_989434.1 CDS BARBAKC583_1176 NC_008783.1 1217317 1217844 D identified by similarity to SP:P44758; match to protein family HMM PF00578; match to protein family HMM PF08534; putative peroxiredoxin 1217317..1217844 Bartonella bacilliformis KC583 4683970 YP_989435.1 CDS BARBAKC583_1177 NC_008783.1 1217862 1217981 R hypothetical protein complement(1217862..1217981) Bartonella bacilliformis KC583 4684789 YP_989436.1 CDS hisS NC_008783.1 1218053 1219543 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1218053..1219543) Bartonella bacilliformis KC583 4684829 YP_989437.1 CDS BARBAKC583_1179 NC_008783.1 1219787 1219951 R hypothetical protein complement(1219787..1219951) Bartonella bacilliformis KC583 4683912 YP_989438.1 CDS BARBAKC583_1180 NC_008783.1 1220076 1222010 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:NP_710801.1; match to protein family HMM PF07598; hypothetical protein 1220076..1222010 Bartonella bacilliformis KC583 4684300 YP_989439.1 CDS BARBAKC583_1181 NC_008783.1 1221988 1222140 D hypothetical protein 1221988..1222140 Bartonella bacilliformis KC583 4683964 YP_989440.1 CDS BARBAKC583_1182 NC_008783.1 1222382 1222888 R hypothetical protein complement(1222382..1222888) Bartonella bacilliformis KC583 4683830 YP_989441.1 CDS BARBAKC583_1183 NC_008783.1 1223631 1225553 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:NP_711583.1; match to protein family HMM PF07598; hypothetical protein 1223631..1225553 Bartonella bacilliformis KC583 4684161 YP_989442.1 CDS BARBAKC583_1184 NC_008783.1 1225871 1226017 R identified by similarity to RF:YP_033851.1; hypothetical protein complement(1225871..1226017) Bartonella bacilliformis KC583 4685007 YP_989443.1 CDS BARBAKC583_1187 NC_008783.1 1227258 1227566 R hypothetical protein complement(1227258..1227566) Bartonella bacilliformis KC583 4684019 YP_989444.1 CDS BARBAKC583_1189 NC_008783.1 1230094 1230210 R hypothetical protein complement(1230094..1230210) Bartonella bacilliformis KC583 4684797 YP_989445.1 CDS BARBAKC583_1190 NC_008783.1 1230210 1232144 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:YP_000623.1; match to protein family HMM PF07598; hypothetical protein 1230210..1232144 Bartonella bacilliformis KC583 4684937 YP_989446.1 CDS gpsA NC_008783.1 1232586 1233521 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1232586..1233521 Bartonella bacilliformis KC583 4684265 YP_989447.1 CDS pheP NC_008783.1 1234097 1235524 R also shows similarity to aroP; identified by similarity to SP:P15993; match to protein family HMM PF00324; phenylalanine-specific permease PheP complement(1234097..1235524) Bartonella bacilliformis KC583 4684586 YP_989448.1 CDS bioY NC_008783.1 1236145 1236699 R identified by similarity to GB:AAT52198.1; match to protein family HMM PF02632; biotin transport protein BioY complement(1236145..1236699) Bartonella bacilliformis KC583 4684288 YP_989449.1 CDS BARBAKC583_1194 NC_008783.1 1236696 1237349 R identified by match to protein family HMM PF02361; putative biotin ABC transporter, permease protein complement(1236696..1237349) Bartonella bacilliformis KC583 4684933 YP_989450.1 CDS BARBAKC583_1195 NC_008783.1 1237346 1238026 R identified by similarity to GB:AAT52196.1; match to protein family HMM PF00005; match to protein family HMM PF02463; putative biotin ABC transporter, ATP-binding protein BioM complement(1237346..1238026) Bartonella bacilliformis KC583 4683888 YP_989451.1 CDS aroP NC_008783.1 1238072 1239499 R also shows similarity to pheP; identified by similarity to SP:P15993; match to protein family HMM PF00324; aromatic amino acid transport protein AroP complement(1238072..1239499) Bartonella bacilliformis KC583 4683913 YP_989452.1 CDS BARBAKC583_1197 NC_008783.1 1239821 1239937 R hypothetical protein complement(1239821..1239937) Bartonella bacilliformis KC583 4685158 YP_989453.1 CDS dcd NC_008783.1 1241514 1242617 R Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase complement(1241514..1242617) Bartonella bacilliformis KC583 4684990 YP_989454.1 CDS mutL NC_008783.1 1242933 1244768 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1242933..1244768 Bartonella bacilliformis KC583 4685091 YP_989455.1 CDS BARBAKC583_1202 NC_008783.1 1244890 1245123 D identified by similarity to RF:YP_031959.1; hypothetical protein 1244890..1245123 Bartonella bacilliformis KC583 4684089 YP_989456.1 CDS lpxK NC_008783.1 1245173 1246192 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(1245173..1246192) Bartonella bacilliformis KC583 4683863 YP_989457.1 CDS kdtA NC_008783.1 1246196 1247506 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(1246196..1247506) Bartonella bacilliformis KC583 4684993 YP_989458.1 CDS BARBAKC583_1205 NC_008783.1 1247520 1248275 R identified by similarity to RF:YP_223014.1; match to protein family HMM PF04028; hypothetical protein complement(1247520..1248275) Bartonella bacilliformis KC583 4684816 YP_989459.1 CDS BARBAKC583_1206 NC_008783.1 1248358 1248591 R identified by similarity to RF:YP_033117.1; hypothetical protein complement(1248358..1248591) Bartonella bacilliformis KC583 4684015 YP_989460.1 CDS BARBAKC583_1208 NC_008783.1 1249426 1250757 R identified by match to protein family HMM PF01523; TldD/PmbA family protein complement(1249426..1250757) Bartonella bacilliformis KC583 4684304 YP_989461.1 CDS BARBAKC583_1209 NC_008783.1 1251214 1251771 R identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase complement(1251214..1251771) Bartonella bacilliformis KC583 4684939 YP_989462.1 CDS BARBAKC583_1210 NC_008783.1 1251752 1253251 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase complement(1251752..1253251) Bartonella bacilliformis KC583 4684016 YP_989463.1 CDS BARBAKC583_1211 NC_008783.1 1253413 1253859 D identified by match to protein family HMM PF00383; cytidine and deoxycytidylate deaminase zinc-binding protein 1253413..1253859 Bartonella bacilliformis KC583 4685059 YP_989464.1 CDS ileS NC_008783.1 1254328 1257243 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1254328..1257243) Bartonella bacilliformis KC583 4684669 YP_989465.1 CDS BARBAKC583_1213 NC_008783.1 1257486 1258340 R identified by match to protein family HMM PF02530; omp25/ropB family outer membrane protein complement(1257486..1258340) Bartonella bacilliformis KC583 4684298 YP_989466.1 CDS BARBAKC583_1214 NC_008783.1 1258483 1259385 R identified by similarity to GB:AAL27289.1; match to protein family HMM PF02530; omp25/ropB family outer membrane protein complement(1258483..1259385) Bartonella bacilliformis KC583 4683843 YP_989467.1 CDS BARBAKC583_1215 NC_008783.1 1259526 1260371 R identified by match to protein family HMM PF02530; omp25/ropB family outer membrane protein complement(1259526..1260371) Bartonella bacilliformis KC583 4684758 YP_989468.1 CDS BARBAKC583_1216 NC_008783.1 1260812 1261138 R identified by similarity to RF:YP_033106.1; hypothetical protein complement(1260812..1261138) Bartonella bacilliformis KC583 4684452 YP_989469.1 CDS BARBAKC583_1217 NC_008783.1 1261996 1263909 D homology to a family of hypothetical proteins in Leptospira interrogans; identified by similarity to RF:YP_000623.1; match to protein family HMM PF07598; hypothetical protein 1261996..1263909 Bartonella bacilliformis KC583 4684525 YP_989470.1 CDS BARBAKC583_1218 NC_008783.1 1263890 1264003 D hypothetical protein 1263890..1264003 Bartonella bacilliformis KC583 4684699 YP_989471.1 CDS BARBAKC583_1219 NC_008783.1 1264067 1264687 R identified by match to protein family HMM PF01612; 3'-5' exonuclease domain-containing protein complement(1264067..1264687) Bartonella bacilliformis KC583 4684627 YP_989472.1 CDS BARBAKC583_1220 NC_008783.1 1264659 1266074 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein complement(1264659..1266074) Bartonella bacilliformis KC583 4684149 YP_989473.1 CDS mutM NC_008783.1 1266148 1267023 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(1266148..1267023) Bartonella bacilliformis KC583 4684489 YP_989474.1 CDS BARBAKC583_1222 NC_008783.1 1267071 1268321 R identified by similarity to SP:P24828; match to protein family HMM PF02073; metalloprotease complement(1267071..1268321) Bartonella bacilliformis KC583 4684618 YP_989475.1 CDS BARBAKC583_1223 NC_008783.1 1268349 1269203 R identified by match to protein family HMM PF07486; cell wall hydrolase family protein complement(1268349..1269203) Bartonella bacilliformis KC583 4684770 YP_989476.1 CDS phoU NC_008783.1 1269493 1270215 R identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU complement(1269493..1270215) Bartonella bacilliformis KC583 4684870 YP_989477.1 CDS pstB NC_008783.1 1270238 1270996 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(1270238..1270996) Bartonella bacilliformis KC583 4684507 YP_989478.1 CDS pstA NC_008783.1 1271037 1272329 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter, permease protein PstA complement(1271037..1272329) Bartonella bacilliformis KC583 4685147 YP_989479.1 CDS pstC NC_008783.1 1272326 1273786 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter, permease protein PstC complement(1272326..1273786) Bartonella bacilliformis KC583 4683801 YP_989480.1 CDS pstS NC_008783.1 1273849 1274895 R phosphate ABC transporter, periplasmic phosphate-binding protein complement(1273849..1274895) Bartonella bacilliformis KC583 4684744 YP_989481.1 CDS gshB NC_008783.1 1275042 1275980 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(1275042..1275980) Bartonella bacilliformis KC583 4683900 YP_989482.1 CDS BARBAKC583_1231 NC_008783.1 1276069 1276857 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 1276069..1276857 Bartonella bacilliformis KC583 4684168 YP_989483.1 CDS BARBAKC583_1232 NC_008783.1 1277527 1277655 R hypothetical protein complement(1277527..1277655) Bartonella bacilliformis KC583 4683908 YP_989484.1 CDS BARBAKC583_1235 NC_008783.1 1279398 1279955 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(1279398..1279955) Bartonella bacilliformis KC583 4684037 YP_989485.1 CDS kdsB NC_008783.1 1280060 1280791 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1280060..1280791 Bartonella bacilliformis KC583 4684700 YP_989486.1 CDS BARBAKC583_1237 NC_008783.1 1280868 1280987 R hypothetical protein complement(1280868..1280987) Bartonella bacilliformis KC583 4684670 YP_989487.1 CDS dnaX NC_008783.1 1281536 1283440 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1281536..1283440 Bartonella bacilliformis KC583 4683993 YP_989488.1 CDS BARBAKC583_1239 NC_008783.1 1283455 1283781 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 1283455..1283781 Bartonella bacilliformis KC583 4684121 YP_989489.1 CDS recR NC_008783.1 1283819 1284424 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1283819..1284424 Bartonella bacilliformis KC583 4684704 YP_989490.1 CDS BARBAKC583_1241 NC_008783.1 1284661 1285368 D identified by match to protein family HMM PF00814; glycoprotease family protein 1284661..1285368 Bartonella bacilliformis KC583 4683810 YP_989491.1 CDS BARBAKC583_1242 NC_008783.1 1285361 1285852 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 1285361..1285852 Bartonella bacilliformis KC583 4684963 YP_989492.1 CDS miaB NC_008783.1 1285884 1287260 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1285884..1287260 Bartonella bacilliformis KC583 4684980 YP_989493.1 CDS BARBAKC583_1244 NC_008783.1 1287417 1288529 D identified by match to protein family HMM PF02562; PhoH family protein 1287417..1288529 Bartonella bacilliformis KC583 4684633 YP_989494.1 CDS BARBAKC583_1245 NC_008783.1 1288537 1289013 D identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 1288537..1289013 Bartonella bacilliformis KC583 4684276 YP_989495.1 CDS corC NC_008783.1 1289116 1290138 D identified by similarity to SP:P0A2L3; match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC 1289116..1290138 Bartonella bacilliformis KC583 4684406 YP_989496.1 CDS lnt NC_008783.1 1290101 1291726 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1290101..1291726 Bartonella bacilliformis KC583 4684868 YP_989497.1 CDS BARBAKC583_1248 NC_008783.1 1291877 1292290 D identified by match to protein family HMM PF01381; DNA-binding protein 1291877..1292290 Bartonella bacilliformis KC583 4684156 YP_989498.1 CDS metK NC_008783.1 1292414 1293694 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1292414..1293694 Bartonella bacilliformis KC583 4684200 YP_989499.1 CDS trmB NC_008783.1 1293681 1294382 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1293681..1294382 Bartonella bacilliformis KC583 4683944 YP_989500.1 CDS BARBAKC583_1251 NC_008783.1 1294526 1295155 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1294526..1295155 Bartonella bacilliformis KC583 4684973 YP_989501.1 CDS nusA NC_008783.1 1295204 1296817 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1295204..1296817 Bartonella bacilliformis KC583 4684897 YP_989502.1 CDS BARBAKC583_1253 NC_008783.1 1296819 1297454 D identified by similarity to RF:YP_033069.1; match to protein family HMM PF04296; hypothetical protein 1296819..1297454 Bartonella bacilliformis KC583 4684843 YP_989503.1 CDS infB NC_008783.1 1297451 1299997 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1297451..1299997 Bartonella bacilliformis KC583 4683866 YP_989504.1 CDS rbfA NC_008783.1 1300079 1300525 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1300079..1300525 Bartonella bacilliformis KC583 4684192 YP_989505.1 CDS truB NC_008783.1 1300529 1301491 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1300529..1301491 Bartonella bacilliformis KC583 4683862 YP_989506.1 CDS rpsO NC_008783.1 1301958 1302227 D identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 1301958..1302227 Bartonella bacilliformis KC583 4683824 YP_989507.1 CDS pnp NC_008783.1 1302482 1304683 D identified by similarity to OMNI:AFE_2642; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 1302482..1304683 Bartonella bacilliformis KC583 4684005 YP_989508.1 CDS BARBAKC583_1259 NC_008783.1 1304756 1305754 D identified by match to protein family HMM PF05175; methyltransferase domain-containing protein 1304756..1305754 Bartonella bacilliformis KC583 4684943 YP_989509.1 CDS hslU NC_008783.1 1305772 1307082 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(1305772..1307082) Bartonella bacilliformis KC583 4685115 YP_989510.1 CDS BARBAKC583_1261 NC_008783.1 1307083 1307664 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(1307083..1307664) Bartonella bacilliformis KC583 4685075 YP_989511.1 CDS BARBAKC583_1262 NC_008783.1 1307865 1308854 D identified by match to protein family HMM PF00710; putative L-asparaginase 1307865..1308854 Bartonella bacilliformis KC583 4684075 YP_989512.1 CDS coaA NC_008783.1 1309034 1309978 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 1309034..1309978 Bartonella bacilliformis KC583 4684617 YP_989513.1 CDS BARBAKC583_1264 NC_008783.1 1309992 1311389 D identified by match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase family protein 1309992..1311389 Bartonella bacilliformis KC583 4683805 YP_989514.1 CDS BARBAKC583_1265 NC_008783.1 1311517 1312371 D identified by match to protein family HMM PF00877; NLP/P60 family protein 1311517..1312371 Bartonella bacilliformis KC583 4684815 YP_989515.1 CDS BARBAKC583_1266 NC_008783.1 1312752 1313309 D identified by similarity to RF:YP_031843.1; match to protein family HMM PF06347; match to protein family HMM PF08239; hypothetical protein 1312752..1313309 Bartonella bacilliformis KC583 4683897 YP_989516.1 CDS irr NC_008783.1 1313362 1313805 R identified by similarity to GB:AAO89498.1; match to protein family HMM PF01475; iron response regulator Irr complement(1313362..1313805) Bartonella bacilliformis KC583 4685035 YP_989517.1 CDS fabA NC_008783.1 1314115 1314624 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 1314115..1314624 Bartonella bacilliformis KC583 4684953 YP_989518.1 CDS BARBAKC583_1269 NC_008783.1 1314680 1315900 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 1314680..1315900 Bartonella bacilliformis KC583 4684806 YP_989519.1 CDS BARBAKC583_1270 NC_008783.1 1315948 1316766 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1315948..1316766 Bartonella bacilliformis KC583 4684313 YP_989520.1 CDS BARBAKC583_1271 NC_008783.1 1316934 1317107 R hypothetical protein complement(1316934..1317107) Bartonella bacilliformis KC583 4684380 YP_989521.1 CDS cyoD NC_008783.1 1317110 1317481 R identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847; cytochrome o ubiquinol oxidase, subunit IV complement(1317110..1317481) Bartonella bacilliformis KC583 4684854 YP_989522.1 CDS cyoC NC_008783.1 1317481 1318146 R identified by match to protein family HMM PF00510; cytochrome o ubiquinol oxidase, subunit III complement(1317481..1318146) Bartonella bacilliformis KC583 4683840 YP_989523.1 CDS cyoB NC_008783.1 1318143 1320161 R identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase, subunit I complement(1318143..1320161) Bartonella bacilliformis KC583 4685024 YP_989524.1 CDS cyoA NC_008783.1 1320256 1321227 R identified by match to protein family HMM PF00116; match to protein family HMM TIGR01433; cytochrome o ubiquinol oxidase, subunit II complement(1320256..1321227) Bartonella bacilliformis KC583 4683854 YP_989525.1 CDS aroQ NC_008783.1 1321332 1321808 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(1321332..1321808) Bartonella bacilliformis KC583 4684272 YP_989526.1 CDS recF NC_008783.1 1321846 1322982 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(1321846..1322982) Bartonella bacilliformis KC583 4684694 YP_989527.1 CDS dnaN NC_008783.1 1323016 1324137 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(1323016..1324137) Bartonella bacilliformis KC583 4684955 YP_989528.1 CDS dnaA NC_008783.1 1324320 1325894 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(1324320..1325894) Bartonella bacilliformis KC583 4684659 YP_989529.1 CDS BARBAKC583_1280 NC_008783.1 1326118 1326255 R hypothetical protein complement(1326118..1326255) Bartonella bacilliformis KC583 4684879 YP_989530.1 CDS rpsT NC_008783.1 1326576 1326842 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1326576..1326842) Bartonella bacilliformis KC583 4685104 YP_989531.1 CDS acnA NC_008783.1 1327051 1329738 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1327051..1329738) Bartonella bacilliformis KC583 4684116 YP_989532.1 CDS BARBAKC583_1283 NC_008783.1 1329919 1330035 D hypothetical protein 1329919..1330035 Bartonella bacilliformis KC583 4684413 YP_989533.1 CDS ccmA NC_008783.1 1330032 1330658 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1330032..1330658 Bartonella bacilliformis KC583 4684785 YP_989534.1 CDS ccmB NC_008783.1 1330655 1331320 D identified by similarity to SP:P30964; match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB 1330655..1331320 Bartonella bacilliformis KC583 4684598 YP_989535.1 CDS ccmC NC_008783.1 1331364 1332143 D identified by similarity to SP:P30962; match to protein family HMM PF01578; match to protein family HMM TIGR01191; heme exporter protein CcmC 1331364..1332143 Bartonella bacilliformis KC583 4684325 YP_989536.1 CDS ccmD NC_008783.1 1332131 1332382 D identified by match to protein family HMM TIGR03141; heme exporter protein CcmD 1332131..1332382 Bartonella bacilliformis KC583 4684805 YP_989537.1 CDS cycY NC_008783.1 1332357 1332983 D identified by similarity to SP:P45409; match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interchange protein CycY 1332357..1332983 Bartonella bacilliformis KC583 4684502 YP_989538.1 CDS BARBAKC583_1289 NC_008783.1 1333243 1333782 R identified by match to protein family HMM PF07750; GcrA cell cycle regulator complement(1333243..1333782) Bartonella bacilliformis KC583 4685076 YP_989539.1 CDS argD NC_008783.1 1334214 1335419 D DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 1334214..1335419 Bartonella bacilliformis KC583 4683986 YP_989540.1 CDS argF NC_008783.1 1335425 1336357 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1335425..1336357 Bartonella bacilliformis KC583 4684278 YP_989541.1 CDS hslO NC_008783.1 1336388 1337377 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 1336388..1337377 Bartonella bacilliformis KC583 4684607 YP_989542.1 CDS BARBAKC583_1293 NC_008783.1 1337802 1338389 R identified by match to protein family HMM PF01713; Smr domain-containing protein complement(1337802..1338389) Bartonella bacilliformis KC583 4684540 YP_989543.1 CDS BARBAKC583_1294 NC_008783.1 1338435 1339127 R identified by match to protein family HMM PF04280; Tim44 domain-containing protein complement(1338435..1339127) Bartonella bacilliformis KC583 4685135 YP_989544.1 CDS BARBAKC583_1295 NC_008783.1 1339339 1339872 D identified by match to protein family HMM PF04186; fxsA cytoplasmic membrane protein 1339339..1339872 Bartonella bacilliformis KC583 4685144 YP_989545.1 CDS secB NC_008783.1 1339975 1340454 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 1339975..1340454 Bartonella bacilliformis KC583 4685103 YP_989546.1 CDS BARBAKC583_1297 NC_008783.1 1340762 1340902 R hypothetical protein complement(1340762..1340902) Bartonella bacilliformis KC583 4684522 YP_989547.1 CDS BARBAKC583_1298 NC_008783.1 1340973 1342295 R identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF03949; malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) complement(1340973..1342295) Bartonella bacilliformis KC583 4684372 YP_989548.1 CDS mutS NC_008783.1 1342493 1345237 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1342493..1345237 Bartonella bacilliformis KC583 4684147 YP_989549.1 CDS BARBAKC583_1300 NC_008783.1 1345304 1345450 R hypothetical protein complement(1345304..1345450) Bartonella bacilliformis KC583 4684923 YP_989550.1 CDS BARBAKC583_1302 NC_008783.1 1345536 1345913 R identified by match to protein family HMM TIGR02300; hypothetical protein complement(1345536..1345913) Bartonella bacilliformis KC583 4684390 YP_989551.1 CDS aroA NC_008783.1 1346099 1347424 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1346099..1347424 Bartonella bacilliformis KC583 4684560 YP_989552.1 CDS cmk NC_008783.1 1347421 1348068 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1347421..1348068 Bartonella bacilliformis KC583 4684809 YP_989553.1 CDS rpsA NC_008783.1 1348203 1349903 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1348203..1349903 Bartonella bacilliformis KC583 4684756 YP_989554.1 CDS BARBAKC583_1306 NC_008783.1 1350065 1358719 D identified by similarity to GB:AAC34747.2; match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205; cyclic beta 1-2 glucan synthase 1350065..1358719 Bartonella bacilliformis KC583 4684997 YP_989555.1 CDS pncB NC_008783.1 1358856 1360130 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1358856..1360130 Bartonella bacilliformis KC583 4684516 YP_989556.1 CDS afeD NC_008783.1 1360723 1361628 R identified by similarity to GB:AAU94305.1; match to protein family HMM PF00950; iron chelate ABC transporter, permease protein AfeD complement(1360723..1361628) Bartonella bacilliformis KC583 4684930 YP_989557.1 CDS afeC NC_008783.1 1361633 1362490 R similarity to yfeC of Yersinia pestis; identified by similarity to GB:AAU94304.1; match to protein family HMM PF00950; match to protein family HMM PF01032; iron chelate ABC transporter, permease protein AfeC complement(1361633..1362490) Bartonella bacilliformis KC583 4684454 YP_989558.1 CDS afeB NC_008783.1 1362487 1363329 R similarity to yfeB of Yersinia pestis; identified by similarity to GB:AAU94303.1; match to protein family HMM PF00005; iron chelate ABC transporter, ATP-binding protein complement(1362487..1363329) Bartonella bacilliformis KC583 4685110 YP_989559.1 CDS afeA NC_008783.1 1363326 1364234 R similarity to yfeA of Yersinia pestis; identified by similarity to GB:AAU94302.1; match to protein family HMM PF01297; iron chelate ABC transporter, periplasmic iron chelate-binding protein complement(1363326..1364234) Bartonella bacilliformis KC583 4684447 YP_989560.1 CDS pheT NC_008783.1 1364506 1366917 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1364506..1366917) Bartonella bacilliformis KC583 4684784 YP_989561.1 CDS pheS NC_008783.1 1366949 1368034 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1366949..1368034) Bartonella bacilliformis KC583 4683823 YP_989562.1 CDS rplT NC_008783.1 1368127 1368528 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1368127..1368528) Bartonella bacilliformis KC583 4685081 YP_989563.1 CDS rpmI NC_008783.1 1368562 1368765 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(1368562..1368765) Bartonella bacilliformis KC583 4684176 YP_989564.1 CDS nth NC_008783.1 1368896 1369654 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(1368896..1369654) Bartonella bacilliformis KC583 4684915 YP_989565.1 CDS BARBAKC583_1317 NC_008783.1 1369830 1370420 R putative lipoprotein complement(1369830..1370420) Bartonella bacilliformis KC583 4685142 YP_989566.1 CDS BARBAKC583_1318 NC_008783.1 1370518 1371690 R identified by match to protein family HMM PF02646; RmuC domain-containing protein complement(1370518..1371690) Bartonella bacilliformis KC583 4684404 YP_989567.1 CDS def NC_008783.1 1371794 1372342 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1371794..1372342 Bartonella bacilliformis KC583 4684713 YP_989568.1 CDS fmt NC_008783.1 1372343 1373272 D identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 1372343..1373272 Bartonella bacilliformis KC583 4684295 YP_989569.1 CDS truA NC_008783.1 1373274 1374017 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1373274..1374017 Bartonella bacilliformis KC583 4684819 YP_989570.1 CDS BARBAKC583_1322 NC_008783.1 1374050 1374868 R identified by match to protein family HMM PF03641; hypothetical protein complement(1374050..1374868) Bartonella bacilliformis KC583 4684067 YP_989571.1 CDS dapD NC_008783.1 1375002 1375850 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1375002..1375850 Bartonella bacilliformis KC583 4684365 YP_989572.1 CDS lepA NC_008783.1 1375934 1377775 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1375934..1377775) Bartonella bacilliformis KC583 4685111 YP_989573.1 CDS BARBAKC583_1325 NC_008783.1 1377951 1378877 R identified by match to protein family HMM PF00892; integral membrane protein complement(1377951..1378877) Bartonella bacilliformis KC583 4684026 YP_989574.1 CDS argB NC_008783.1 1378900 1379805 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1378900..1379805) Bartonella bacilliformis KC583 4684528 YP_989575.1 CDS dnaJ NC_008783.1 1380271 1381416 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1380271..1381416) Bartonella bacilliformis KC583 4685026 YP_989576.1 CDS dnaK NC_008783.1 1381574 1383469 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1381574..1383469) Bartonella bacilliformis KC583 4685084 YP_989577.1 CDS BARBAKC583_1329 NC_008783.1 1383535 1383651 R hypothetical protein complement(1383535..1383651) Bartonella bacilliformis KC583 4683983 YP_989578.1 CDS BARBAKC583_1330 NC_008783.1 1384252 1384770 D identified by similarity to RF:NP_104456.1; match to protein family HMM PF04314; hypothetical protein 1384252..1384770 Bartonella bacilliformis KC583 4684791 YP_989579.1 CDS BARBAKC583_1331 NC_008783.1 1384970 1385089 D hypothetical protein 1384970..1385089 Bartonella bacilliformis KC583 4684883 YP_989580.1 CDS bvrR NC_008783.1 1385384 1386106 D identified by similarity to GB:AAC28777.1; match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein BvrR 1385384..1386106 Bartonella bacilliformis KC583 4684945 YP_989581.1 CDS bvrS NC_008783.1 1386146 1387969 D identified by similarity to GB:AAC28778.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase BvrS 1386146..1387969 Bartonella bacilliformis KC583 4684209 YP_989582.1 CDS grpE NC_008783.1 1388134 1388802 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1388134..1388802) Bartonella bacilliformis KC583 4685155 YP_989583.1 CDS rdgB NC_008783.1 1390591 1391238 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1390591..1391238 Bartonella bacilliformis KC583 4685053 YP_989584.1 CDS BARBAKC583_1337 NC_008783.1 1391235 1392413 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1391235..1392413 Bartonella bacilliformis KC583 4685134 YP_989585.1 CDS dapE NC_008783.1 1392461 1393633 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1392461..1393633) Bartonella bacilliformis KC583 4684198 YP_989586.1 CDS BARBAKC583_1339 NC_008783.1 1393752 1394483 R identified by similarity to RF:YP_031771.1; match to protein family HMM PF01863; hypothetical protein complement(1393752..1394483) Bartonella bacilliformis KC583 4684025 YP_989587.1 CDS BARBAKC583_1340 NC_008783.1 1394539 1395318 R identified by similarity to RF:NP_699091.1; hypothetical protein complement(1394539..1395318) Bartonella bacilliformis KC583 4683950 YP_989588.1 CDS infC NC_008783.1 1395509 1396030 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1395509..1396030 Bartonella bacilliformis KC583 4684344 YP_989589.1 CDS BARBAKC583_1342 NC_008783.1 1396249 1398015 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter, permease/ATP-binding protein 1396249..1398015 Bartonella bacilliformis KC583 4684536 YP_989590.1 CDS BARBAKC583_1343 NC_008783.1 1398041 1402693 R identified by match to protein family HMM PF04357; hypothetical protein complement(1398041..1402693) Bartonella bacilliformis KC583 4683833 YP_989591.1 CDS BARBAKC583_1344 NC_008783.1 1402693 1404654 R identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein complement(1402693..1404654) Bartonella bacilliformis KC583 4684752 YP_989592.1 CDS BARBAKC583_1345 NC_008783.1 1405064 1406596 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 1405064..1406596 Bartonella bacilliformis KC583 4684600 YP_989593.1 CDS gyrB NC_008783.1 1406996 1409425 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1406996..1409425 Bartonella bacilliformis KC583 4684252 YP_989594.1 CDS ubiE NC_008783.1 1409543 1410325 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1409543..1410325 Bartonella bacilliformis KC583 4685054 YP_989595.1 CDS ubiB NC_008783.1 1410329 1411918 D identified by match to protein family HMM PF03109; match to protein family HMM TIGR01982; 2-polyprenylphenol 6-hydroxylase 1410329..1411918 Bartonella bacilliformis KC583 4683873 YP_989596.1 CDS coaBC NC_008783.1 1412156 1413391 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1412156..1413391 Bartonella bacilliformis KC583 4684652 YP_989597.1 CDS BARBAKC583_1350 NC_008783.1 1413786 1414505 D putative role in sulfur assimilation; CysZ-like protein 1413786..1414505 Bartonella bacilliformis KC583 4685109 YP_989598.1 CDS accD NC_008783.1 1414777 1415697 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1414777..1415697 Bartonella bacilliformis KC583 4684181 YP_989599.1 CDS folC NC_008783.1 1415701 1417023 D identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499; folylpolyglutamate synthase 1415701..1417023 Bartonella bacilliformis KC583 4684572 YP_989600.1 CDS BARBAKC583_1353 NC_008783.1 1417067 1418065 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 1417067..1418065 Bartonella bacilliformis KC583 4684844 YP_989601.1 CDS BARBAKC583_1354 NC_008783.1 1418610 1421084 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1418610..1421084 Bartonella bacilliformis KC583 4684262 YP_989602.1 CDS BARBAKC583_1355 NC_008783.1 1421150 1422643 D identified by match to protein family HMM PF01636; match to protein family HMM PF02367; match to protein family HMM PF02958; match to protein family HMM TIGR00150; P-loop hydrolase/phosphotransferase 1421150..1422643 Bartonella bacilliformis KC583 4684985 YP_989603.1 CDS addB NC_008783.1 1422818 1425961 D identified by match to protein family HMM TIGR02786; double-strand break repair protein AddB 1422818..1425961 Bartonella bacilliformis KC583 4683976 YP_989604.1 CDS addA NC_008783.1 1425958 1429425 D identified by match to protein family HMM PF00580; match to protein family HMM TIGR02784; double-strand break repair helicase AddA 1425958..1429425 Bartonella bacilliformis KC583 4684909 YP_989605.1 CDS trx NC_008783.1 1429536 1429859 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1429536..1429859 Bartonella bacilliformis KC583 4683816 YP_989606.1 CDS prfC NC_008783.1 1429941 1431518 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 complement(1429941..1431518) Bartonella bacilliformis KC583 4684212 YP_989607.1 CDS lysK NC_008783.1 1431518 1433179 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(1431518..1433179) Bartonella bacilliformis KC583 4684162 YP_989608.1 CDS argG NC_008783.1 1433381 1434604 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(1433381..1434604) Bartonella bacilliformis KC583 4684191 YP_989609.1 CDS BARBAKC583_1363 NC_008783.1 1434789 1435430 D identified by match to protein family HMM PF01810; LysE family translocator protein 1434789..1435430 Bartonella bacilliformis KC583 4684581 YP_989610.1 CDS BARBAKC583_1362 NC_008783.1 1435427 1436671 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; radical SAM protein complement(1435427..1436671) Bartonella bacilliformis KC583 4684827 YP_989611.1 CDS BARBAKC583_1364 NC_008783.1 1436699 1437208 R identified by similarity to RF:YP_031747.1; hypothetical protein complement(1436699..1437208) Bartonella bacilliformis KC583 4684641 YP_989612.1 CDS ptsN NC_008783.1 1437735 1438199 R identified by similarity to SP:P69829; match to protein family HMM PF00359; match to protein family HMM TIGR01419; PTS IIA-like nitrogen-regulatory protein PtsN complement(1437735..1438199) Bartonella bacilliformis KC583 4684333 YP_989613.1 CDS BARBAKC583_1366 NC_008783.1 1438345 1438650 R hypothetical protein complement(1438345..1438650) Bartonella bacilliformis KC583 4684873 YP_989614.1 CDS BARBAKC583_1367 NC_008783.1 1439033 1439176 R hypothetical protein complement(1439033..1439176) Bartonella bacilliformis KC583 4684363 YP_989615.1 CDS BARBAKC583_1368 NC_008783.1 1439376 1440170 R identified by match to protein family HMM PF00005; ABC transporter, ATP-binding protein complement(1439376..1440170) Bartonella bacilliformis KC583 4685078 YP_989616.1 CDS BARBAKC583_1369 NC_008783.1 1440177 1440779 R identified by match to protein family HMM PF03968; OstA family protein complement(1440177..1440779) Bartonella bacilliformis KC583 4684892 YP_989617.1 CDS BARBAKC583_1370 NC_008783.1 1440847 1441491 R identified by similarity to RF:YP_031743.1; match to protein family HMM PF06835; hypothetical protein complement(1440847..1441491) Bartonella bacilliformis KC583 4684856 YP_989618.1 CDS ihfB NC_008783.1 1441680 1441958 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1441680..1441958 Bartonella bacilliformis KC583 4684245 YP_989619.1 CDS BARBAKC583_1372 NC_008783.1 1441967 1442218 D identified by similarity to RF:YP_032885.1; hypothetical protein 1441967..1442218 Bartonella bacilliformis KC583 4684024 YP_989620.1 CDS BARBAKC583_1373 NC_008783.1 1442418 1443362 D Identification is based on SCOP SUPERFAMILY HMM SSF53335.; putative SAM-dependent methyltransferase 1442418..1443362 Bartonella bacilliformis KC583 4684861 YP_989621.1 CDS BARBAKC583_1374 NC_008783.1 1443365 1444189 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 1443365..1444189 Bartonella bacilliformis KC583 4685126 YP_989622.1 CDS lspA NC_008783.1 1444216 1444713 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1444216..1444713 Bartonella bacilliformis KC583 4683883 BARBAKC583_0046 tRNA BARBAKC583_0046 NC_008783.1 50798 50872 R tRNA-Gly complement(50798..50872) Bartonella bacilliformis KC583 4684247 BARBAKC583_0184 tRNA BARBAKC583_0184 NC_008783.1 191477 191561 D tRNA-Leu 191477..191561 Bartonella bacilliformis KC583 4683814 BARBAKC583_0198 tRNA BARBAKC583_0198 NC_008783.1 201823 201897 R tRNA-Thr complement(201823..201897) Bartonella bacilliformis KC583 4684339 BARBAKC583_0259 tRNA BARBAKC583_0259 NC_008783.1 253697 253773 D tRNA-Ile 253697..253773 Bartonella bacilliformis KC583 4683956 BARBAKC583_0260 tRNA BARBAKC583_0260 NC_008783.1 253896 253971 D tRNA-Ala 253896..253971 Bartonella bacilliformis KC583 4684193 BARBAKC583_0263 tRNA BARBAKC583_0263 NC_008783.1 257437 257513 D tRNA-Met 257437..257513 Bartonella bacilliformis KC583 4683953 BARBAKC583_0269 tRNA BARBAKC583_0269 NC_008783.1 260823 260898 R tRNA-Phe complement(260823..260898) Bartonella bacilliformis KC583 4684431 BARBAKC583_0294 tRNA BARBAKC583_0294 NC_008783.1 282066 282142 D tRNA-His 282066..282142 Bartonella bacilliformis KC583 4684495 BARBAKC583_0303 tRNA BARBAKC583_0303 NC_008783.1 292143 292219 R tRNA-Arg complement(292143..292219) Bartonella bacilliformis KC583 4684056 BARBAKC583_0308 tRNA BARBAKC583_0308 NC_008783.1 298745 298834 R tRNA-Ser complement(298745..298834) Bartonella bacilliformis KC583 4683894 BARBAKC583_0419 tRNA BARBAKC583_0419 NC_008783.1 423255 423329 D tRNA-Gln 423255..423329 Bartonella bacilliformis KC583 4684236 BARBAKC583_0448 tRNA BARBAKC583_0448 NC_008783.1 454701 454791 D tRNA-Ser 454701..454791 Bartonella bacilliformis KC583 4683872 BARBAKC583_0552 tRNA BARBAKC583_0552 NC_008783.1 565396 565478 D tRNA-Leu 565396..565478 Bartonella bacilliformis KC583 4684896 BARBAKC583_0560 tRNA BARBAKC583_0560 NC_008783.1 572344 572427 D tRNA-Tyr 572344..572427 Bartonella bacilliformis KC583 4684519 BARBAKC583_0561 tRNA BARBAKC583_0561 NC_008783.1 572451 572524 D tRNA-Gly 572451..572524 Bartonella bacilliformis KC583 4683984 BARBAKC583_0564 tRNA BARBAKC583_0564 NC_008783.1 573914 573989 D tRNA-Trp 573914..573989 Bartonella bacilliformis KC583 4683985 BARBAKC583_0610 tRNA BARBAKC583_0610 NC_008783.1 628819 628895 D tRNA-Arg 628819..628895 Bartonella bacilliformis KC583 4684823 BARBAKC583_0611 tRNA BARBAKC583_0611 NC_008783.1 629272 629346 R tRNA-Val complement(629272..629346) Bartonella bacilliformis KC583 4684375 BARBAKC583_0615 tRNA BARBAKC583_0615 NC_008783.1 631217 631293 R tRNA-Pro complement(631217..631293) Bartonella bacilliformis KC583 4683809 BARBAKC583_0645 tRNA BARBAKC583_0645 NC_008783.1 662845 662929 D tRNA-Leu 662845..662929 Bartonella bacilliformis KC583 4684558 BARBAKC583_0649 tRNA BARBAKC583_0649 NC_008783.1 667843 667917 R tRNA-Asn complement(667843..667917) Bartonella bacilliformis KC583 4684355 BARBAKC583_0650 tRNA BARBAKC583_0650 NC_008783.1 668105 668178 D tRNA-Cys 668105..668178 Bartonella bacilliformis KC583 4683990 BARBAKC583_0682 tRNA BARBAKC583_0682 NC_008783.1 695596 695670 R tRNA-Asn complement(695596..695670) Bartonella bacilliformis KC583 4684206 BARBAKC583_0683 tRNA BARBAKC583_0683 NC_008783.1 695858 695931 D tRNA-Cys 695858..695931 Bartonella bacilliformis KC583 4684349 BARBAKC583_0745 tRNA BARBAKC583_0745 NC_008783.1 754714 754788 R tRNA-Glu complement(754714..754788) Bartonella bacilliformis KC583 4684504 BARBAKC583_0760 tRNA BARBAKC583_0760 NC_008783.1 776337 776412 R tRNA-Thr complement(776337..776412) Bartonella bacilliformis KC583 4685012 BARBAKC583_0768 tRNA BARBAKC583_0768 NC_008783.1 784065 784141 D tRNA-Pro 784065..784141 Bartonella bacilliformis KC583 4683933 BARBAKC583_0770 tRNA BARBAKC583_0770 NC_008783.1 784570 784646 D tRNA-Arg 784570..784646 Bartonella bacilliformis KC583 4684470 BARBAKC583_0776 tRNA BARBAKC583_0776 NC_008783.1 788784 788859 R tRNA-Val complement(788784..788859) Bartonella bacilliformis KC583 4685122 BARBAKC583_0777 tRNA BARBAKC583_0777 NC_008783.1 789082 789158 D tRNA-Asp 789082..789158 Bartonella bacilliformis KC583 4684250 BARBAKC583_0815 tRNA BARBAKC583_0815 NC_008783.1 835270 835359 R tRNA-Ser complement(835270..835359) Bartonella bacilliformis KC583 4684335 BARBAKC583_0824 tRNA BARBAKC583_0824 NC_008783.1 844244 844319 R tRNA-Lys complement(844244..844319) Bartonella bacilliformis KC583 4684603 BARBAKC583_0876 tRNA BARBAKC583_0876 NC_008783.1 903483 903568 D tRNA-Leu 903483..903568 Bartonella bacilliformis KC583 4684051 BARBAKC583_0882 tRNA BARBAKC583_0882 NC_008783.1 911355 911430 D tRNA-Lys 911355..911430 Bartonella bacilliformis KC583 4684434 BARBAKC583_0911 tRNA BARBAKC583_0911 NC_008783.1 935430 935519 R tRNA-Ser complement(935430..935519) Bartonella bacilliformis KC583 4685157 BARBAKC583_0964 tRNA BARBAKC583_0964 NC_008783.1 996015 996091 R tRNA-Met complement(996015..996091) Bartonella bacilliformis KC583 4684820 BARBAKC583_1025 tRNA BARBAKC583_1025 NC_008783.1 1061073 1061149 D tRNA-Met 1061073..1061149 Bartonella bacilliformis KC583 4684570 BARBAKC583_1053 tRNA BARBAKC583_1053 NC_008783.1 1088890 1088974 D tRNA-Leu 1088890..1088974 Bartonella bacilliformis KC583 4683857 BARBAKC583_1081 tRNA BARBAKC583_1081 NC_008783.1 1108279 1108355 R tRNA-Met complement(1108279..1108355) Bartonella bacilliformis KC583 4684748 BARBAKC583_1084 tRNA BARBAKC583_1084 NC_008783.1 1111821 1111896 R tRNA-Ala complement(1111821..1111896) Bartonella bacilliformis KC583 4683959 BARBAKC583_1085 tRNA BARBAKC583_1085 NC_008783.1 1112019 1112095 R tRNA-Ile complement(1112019..1112095) Bartonella bacilliformis KC583 4684246 BARBAKC583_1115 tRNA BARBAKC583_1115 NC_008783.1 1153813 1153886 D tRNA-Gln 1153813..1153886 Bartonella bacilliformis KC583 4684481 BARBAKC583_1198 tRNA BARBAKC583_1198 NC_008783.1 1240034 1240109 D tRNA-Thr 1240034..1240109 Bartonella bacilliformis KC583 4685008 BARBAKC583_1301 tRNA BARBAKC583_1301 NC_008783.1 1345336 1345411 R tRNA-Ala complement(1345336..1345411) Bartonella bacilliformis KC583 4683849 BARBAKC583_0258 rRNA rrsB NC_008783.1 251900 253371 D 16S ribosomal RNA 251900..253371 Bartonella bacilliformis KC583 4684992 BARBAKC583_0261 rRNA rrlB NC_008783.1 254278 257097 D 23S ribosomal RNA 254278..257097 Bartonella bacilliformis KC583 4685128 BARBAKC583_0262 rRNA rrfB NC_008783.1 257192 257310 D 5S ribosomal RNA 257192..257310 Bartonella bacilliformis KC583 4683955 BARBAKC583_1082 rRNA rrfA NC_008783.1 1108482 1108600 R 5S ribosomal RNA complement(1108482..1108600) Bartonella bacilliformis KC583 4684240 BARBAKC583_1083 rRNA rrlA NC_008783.1 1108695 1111514 R 23S ribosomal RNA complement(1108695..1111514) Bartonella bacilliformis KC583 4683957 BARBAKC583_1086 rRNA rrsA NC_008783.1 1112421 1113892 R 16S ribosomal RNA complement(1112421..1113892) Bartonella bacilliformis KC583 4684177