-- dump date 20140619_000325 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_209742.1 60679598 3288160 67..594 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron tRNA/rRNA methyltransferase BT3165 SWALL:AAO78271 (EMBL:AE016939) (175 aa) fasta scores: E(): 4.1e-62, 90.85% id in 175 aa, and to Chlorobium tepidum SpoU rRNA methylase family protein CT1255 SWALL:Q8KD02 (EMBL:AE012885) (169 aa) fasta scores: E(): 1.3e-21, 41.66% id in 168 aa, and to Fusobacterium nucleatum 23S rRNA methyltransferase FN1519 SWALL:Q8R6H6 (EMBL:AE010460) (234 aa) fasta scores: E(): 5.6e-11, 35.29% id in 153 aa; putative SpoU rRNA methylase family protein 594 3288160 BF9343_0001 Bacteroides fragilis NCTC 9343 putative SpoU rRNA methylase family protein YP_209742.1 67 D 272559 CDS YP_209743.1 60679599 3288027 749..2218 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane protein TolC, putative BT0857 SWALL:AAO75964 (EMBL:AE016929) (490 aa) fasta scores: E(): 4.6e-35, 27.45% id in 488 aa, and to Bacteroides thetaiotaomicron outer membrane protein TolC, putative BT0671 SWALL:AAO75778 (EMBL:AE016928) (499 aa) fasta scores: E(): 2.3e-31, 24.54% id in 493 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein OprM precursor BT1530 SWALL:AAO76637 (EMBL:AE016932) (492 aa) fasta scores: E(): 6.2e-28, 24.74% id in 489 aa, and to Neisseria meningitidis putative outer membrane lipoprotein MtrE or NMA1968 SWALL:Q9JT52 (EMBL:AL162757) (467 aa) fasta scores: E(): 4.8e-05, 20.21% id in 371 aa, and to Acinetobacter baumannii AdeC outer membrane protein SWALL:Q93E18 (EMBL:AF370885) (465 aa) fasta scores: E(): 6.3e-05, 20.53% id in 414 aa; putative outer membrane protein 2218 3288027 BF9343_0002 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_209743.1 749 D 272559 CDS YP_209744.1 60679600 3288161 2211..3182 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT4283 SWALL:AAO79388 (EMBL:AE016944) (329 aa) fasta scores: E(): 1.5e-08, 29.44% id in 180 aa; hypothetical protein 3182 3288161 BF9343_0003 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209744.1 2211 D 272559 CDS YP_209745.1 60679601 3288162 3196..4035 1 NC_003228.3 Similar to Vibrio cholerae sugar transferase SWALL:O34234 (EMBL:Y07786) (337 aa) fasta scores: E(): 1.7e-22, 40.16% id in 239 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT4281 SWALL:AAO79386 (EMBL:AE016944) (277 aa) fasta scores: E(): 4.5e-42, 41.45% id in 275 aa, and to Vibrio cholerae ORF139-19 protein SWALL:P74947 (EMBL:AB012956) (337 aa) fasta scores: E(): 1.5e-22, 39.75% id in 249 aa; putative sugar transferase 4035 3288162 BF9343_0004 Bacteroides fragilis NCTC 9343 putative sugar transferase YP_209745.1 3196 D 272559 CDS YP_209746.1 60679602 3287994 4069..4602 1 NC_003228.3 no significant database matches; hypothetical protein 4602 3287994 BF9343_0005 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209746.1 4069 D 272559 CDS YP_209747.1 60679603 3288026 4663..6468 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4273 SWALL:AAO79378 (EMBL:AE016944) (519 aa) fasta scores: E(): 6e-13, 23.65% id in 503 aa; hypothetical protein 6468 3288026 BF9343_0006 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209747.1 4663 D 272559 CDS YP_209748.1 60679604 3288163 6658..8469 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4273 SWALL:AAO79378 (EMBL:AE016944) (519 aa) fasta scores: E(): 1.1e-15, 26.02% id in 488 aa; hypothetical protein 8469 3288163 BF9343_0007 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209748.1 6658 D 272559 CDS YP_209749.1 60679605 3288164 8625..9743 1 NC_003228.3 Similar to N-terminus of Bacteroides thetaiotaomicron putative glycosyltransferase BT4280 SWALL:Q89ZU4 (EMBL:AE016944) (577 aa) fasta scores: E(): 8.8e-59, 43.73% id in 375 aa, and to entire protein of Streptococcus thermophilus EPS10P SWALL:Q8GP63 (EMBL:AF454500) (376 aa) fasta scores: E(): 4.2e-21, 27.48% id in 382 aa, and to Thermoanaerobacter tengcongensis predicted glycosyltransferases RfaG2 or TTE0275 SWALL:Q8RCY0 (EMBL:AE013000) (404 aa) fasta scores: E(): 5.7e-09, 25.66% id in 300 aa; putative glycosyltransferase 9743 3288164 BF9343_0008 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_209749.1 8625 D 272559 CDS YP_209750.1 60679606 3288165 9724..10392 1 NC_003228.3 Similar to C-terminus of Bacteroides thetaiotaomicron putative glycosyltransferase BT4280 SWALL:Q89ZU4 (EMBL:AE016944) (577 aa) fasta scores: E(): 1.4e-45, 57.35% id in 204 aa, and to entire Yersinia pestis hypothetical protein YPO1382 or Y2791 SWALL:Q8ZGC1 (EMBL:AJ414148) (224 aa) fasta scores: E(): 0.48, 25.78% id in 190 aa; putative glycosyltransferase 10392 3288165 BF9343_0009 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_209750.1 9724 D 272559 CDS YP_209751.1 60679607 3288169 10512..11747 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative hemolysin secretion protein BT4289 SWALL:AAO79394 (EMBL:AE016944) (416 aa) fasta scores: E(): 1.2e-35, 30.69% id in 417 aa, and to Anabaena sp. hypothetical protein ALR1928 SWALL:Q8YVP6 (EMBL:AP003587) (512 aa) fasta scores: E(): 8.4e-09, 24.47% id in 286 aa, and to Xylella fastidiosa colicin V secretion protein XF1216 SWALL:Q9PE12 (EMBL:AE003955) (420 aa) fasta scores: E(): 7.7e-08, 21.15% id in 416 aa; hypothetical protein 11747 3288169 BF9343_0010 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209751.1 10512 D 272559 CDS YP_209752.1 60679608 3288063 11752..13935 1 NC_003228.3 Similar to Riemerella anatipestifer ABC transporter SWALL:Q9AM85 (EMBL:AF327734) (678 aa) fasta scores: E(): 2.1e-88, 37.46% id in 670 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT4288 SWALL:AAO79393 (EMBL:AE016944) (741 aa) fasta scores: E(): 1.4e-177, 62.63% id in 728 aa, and to Anabaena sp. ABC transporter ATP-binding protein ALR1927 SWALL:Q8YVP7 (EMBL:AP003587) (1011 aa) fasta scores: E(): 1.6e-58, 32.69% id in 728 aa; putative ABC transporter ATP-binding protein 13935 3288063 BF9343_0011 Bacteroides fragilis NCTC 9343 putative ABC transporter ATP-binding protein YP_209752.1 11752 D 272559 CDS YP_209753.1 60679609 3288170 complement(14052..14651) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3166 SWALL:AAO78272 (EMBL:AE016939) (190 aa) fasta scores: E(): 2.9e-56, 77.36% id in 190 aa; hypothetical protein 14651 3288170 BF9343_0012 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209753.1 14052 R 272559 CDS YP_209754.1 60679610 3288008 14771..16798 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3167 SWALL:AAO78273 (EMBL:AE016939) (682 aa) fasta scores: E(): 2.7e-177, 60.05% id in 681 aa, and to Chlorobium tepidum hypothetical protein CT0480 SWALL:Q8KF52 (EMBL:AE012824) (667 aa) fasta scores: E(): 6.7e-19, 26.65% id in 664 aa; hypothetical protein 16798 3288008 BF9343_0013 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209754.1 14771 D 272559 CDS YP_209755.1 60679611 3288172 16856..17629 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative Fe-S oxidoreductase BT3168 SWALL:AAO78274 (EMBL:AE016939) (257 aa) fasta scores: E(): 8.2e-83, 79.76% id in 257 aa, and to Helicobacter pylori hypothetical protein HP0117 SWALL:Y117_HELPY (SWALL:P56080) (308 aa) fasta scores: E(): 1.5e-13, 31.37% id in 255 aa, and to Thermoplasma acidophilum hypothetical protein TA1466 SWALL:Q9HI79 (EMBL:AL445067) (325 aa) fasta scores: E(): 1.6e-13, 32.97% id in 188 aa; putative SAM superfamily protein 17629 3288172 BF9343_0014 Bacteroides fragilis NCTC 9343 putative SAM superfamily protein YP_209755.1 16856 D 272559 CDS YP_209756.1 60679612 3288171 17671..18180 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0585 SWALL:AAO75692 (EMBL:AE016928) (169 aa) fasta scores: E(): 9.3e-45, 65.08% id in 169 aa, and to Clostridium tetani conserved protein CTC01047 SWALL:AAO35630 (EMBL:AE015939) (164 aa) fasta scores: E(): 1.3e-13, 36.07% id in 158 aa, and to Fusobacterium nucleatum hypothetical cytosolic protein FN0320 SWALL:Q8RGH5 (EMBL:AE010544) (180 aa) fasta scores: E(): 6.1e-09, 30.85% id in 175 aa; hypothetical protein 18180 3288171 BF9343_0015 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209756.1 17671 D 272559 CDS YP_209757.1 60679613 3288173 18198..19811 1 NC_003228.3 Similar to Klebsiella pneumoniae arylsulfatase precursor AtsA SWALL:Q9X759 (EMBL:AJ131525) (577 aa) fasta scores: E(): 1.2e-37, 32.13% id in 529 aa, and to Bacteroides thetaiotaomicron arylsulfatase BT4683 SWALL:AAO79788 (EMBL:AE016946) (523 aa) fasta scores: E(): 2.8e-145, 66.93% id in 499 aa, and to Bacteroides thetaiotaomicron arylsulfatase BT3093 SWALL:AAO78199 (EMBL:AE016939) (540 aa) fasta scores: E(): 1.1e-45, 39.32% id in 534 aa; putative arylsulfatase precursor 19811 3288173 BF9343_0016 Bacteroides fragilis NCTC 9343 putative arylsulfatase precursor YP_209757.1 18198 D 272559 CDS YP_209758.1 60679614 3288033 complement(19915..20418) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative iron uptake factor BT2063 SWALL:AAO77170 (EMBL:AE016934) (429 aa) fasta scores: E(): 9e-15, 43.69% id in 119 aa, and to Xanthomonas campestris iron-uptake factor PiuB or XCC3955 SWALL:Q8P3W4 (EMBL:AE012516) (839 aa) fasta scores: E(): 1.9e-09, 38.88% id in 108 aa, and to Bradyrhizobium japonicum protein BLL7967 SWALL:BAC53232 (EMBL:AP005964) (398 aa) fasta scores: E(): 1.9e-09, 38.23% id in 102 aa; conserved hypothetical iron transport-related transmembrane protein 20418 3288033 BF9343_0017 Bacteroides fragilis NCTC 9343 conserved hypothetical iron transport-related transmembrane protein YP_209758.1 19915 R 272559 CDS YP_209759.1 60679615 3288174 complement(20542..22956) 1 NC_003228.3 Similar to Salmonella typhimurium ferrichrome iron receptor FhuA SWALL:O86925 (EMBL:Y14025) (729 aa) fasta scores: E(): 3.2e-30, 24.85% id in 684 aa, and to Anabaena sp. ferrichrome-iron receptor ALR2626 SWALL:Q8YTT7 (EMBL:AP003590) (872 aa) fasta scores: E(): 1.2e-43, 28.55% id in 676 aa, and to Anabaena sp. ferrichrome iron receptor ALL4924 SWALL:Q8YMK9 (EMBL:AP003598) (858 aa) fasta scores: E(): 1.3e-37, 25.97% id in 716 aa; putative iron transport receptor protein 22956 3288174 BF9343_0018 Bacteroides fragilis NCTC 9343 putative iron transport receptor protein YP_209759.1 20542 R 272559 CDS YP_209760.1 60679616 3288175 complement(23157..24836) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative sulfate transporter, permease BT3181 SWALL:AAO78287 (EMBL:AE016939) (559 aa) fasta scores: E(): 8.6e-190, 88.17% id in 558 aa, and to Chlorobium tepidum sulfate transporter family protein CT0714 SWALL:Q8KEH5 (EMBL:AE012842) (618 aa) fasta scores: E(): 6.6e-107, 52.61% id in 555 aa, and to Clostridium perfringens probable sulfate permease CPE1480 SWALL:Q8XKC0 (EMBL:AP003190) (551 aa) fasta scores: E(): 2.1e-106, 51.79% id in 558 aa; putative sulfate permease transmembrane protein 24836 3288175 BF9343_0019 Bacteroides fragilis NCTC 9343 putative sulfate permease transmembrane protein YP_209760.1 23157 R 272559 CDS YP_209761.1 60679617 3289299 25097..25675 1 NC_003228.3 Similar to Porphyromonas gingivalis rubrerythrin Rr or Rbr SWALL:RUBY_PORGI (SWALL:Q9AGG3) (200 aa) fasta scores: E(): 2.7e-49, 66.66% id in 192 aa, and to Bacteroides thetaiotaomicron rubrerythrin BT3182 SWALL:AAO78288 (EMBL:AE016939) (192 aa) fasta scores: E(): 4.8e-71, 94.79% id in 192 aa, and to Moorella thermoacetica rubrerythrin Rbr SWALL:Q9RMF8 (EMBL:AF202316) (191 aa) fasta scores: E(): 1.9e-46, 67.19% id in 189 aa; putative rubrerythrin 25675 rbr 3289299 rbr Bacteroides fragilis NCTC 9343 putative rubrerythrin YP_209761.1 25097 D 272559 CDS YP_209762.1 60679618 3289271 complement(25759..27330) 1 NC_003228.3 Similar to Escherichia coli L-aspartate oxidase NadB or NicB or B2574 SWALL:NADB_ECOLI (SWALL:P10902) (540 aa) fasta scores: E(): 6.3e-85, 46.4% id in 528 aa, and to Bacteroides thetaiotaomicron L-aspartate oxidase BT3184 SWALL:AAO78290 (EMBL:AE016939) (523 aa) fasta scores: E(): 1.7e-194, 94.07% id in 523 aa, and to Chlorobium tepidum L-aspartate oxidase NadB or CT0561 SWALL:Q8KEX1 (EMBL:AE012830) (531 aa) fasta scores: E(): 1.2e-100, 51.83% id in 517 aa; putative exported L-aspartate oxidase 27330 nadB 3289271 nadB Bacteroides fragilis NCTC 9343 putative exported L-aspartate oxidase YP_209762.1 25759 R 272559 CDS YP_209763.1 60679619 3288011 27438..27836 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3185 SWALL:AAO78291 (EMBL:AE016939) (131 aa) fasta scores: E(): 4.7e-38, 77.16% id in 127 aa; hypothetical protein 27836 3288011 BF9343_0022 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209763.1 27438 D 272559 CDS YP_209764.1 60679620 3286701 27843..29186 1 NC_003228.3 Similar to Bacillus stearothermophilus dihydrolipoamide dehydrogenase PdhD SWALL:DLD1_BACST (SWALL:P11959) (470 aa) fasta scores: E(): 1.3e-51, 36.94% id in 452 aa, and to Bacteroides thetaiotaomicron dihydrolipoamide dehydrogenase BT3186 SWALL:AAO78292 (EMBL:AE016939) (447 aa) fasta scores: E(): 6.7e-141, 86.13% id in 447 aa, and to Bacteroides thetaiotaomicron dihydrolipoamide dehydrogenase BT0309 SWALL:AAO75416 (EMBL:AE016927) (447 aa) fasta scores: E(): 6.5e-94, 57.87% id in 451 aa; putative dihydrolipoamide dehydrogenase 29186 pdhD 3286701 pdhD Bacteroides fragilis NCTC 9343 putative dihydrolipoamide dehydrogenase YP_209764.1 27843 D 272559 CDS YP_209765.1 60679621 3285336 29290..30699 1 NC_003228.3 Similar to Escherichia coli penicillin-binding protein 4 precursor DacB or B3182 SWALL:PBP4_ECOLI (SWALL:P24228) (477 aa) fasta scores: E(): 2.9e-24, 25.95% id in 470 aa, and to Bacteroides thetaiotaomicron penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase BT3187 SWALL:AAO78293 (EMBL:AE016939) (468 aa) fasta scores: E(): 3.4e-131, 68.87% id in 469 aa, and to Shewanella oneidensis penicillin-binding protein 4 DacB or SO2394 SWALL:Q8EEI8 (EMBL:AE015680) (507 aa) fasta scores: E(): 8.2e-25, 25.81% id in 461 aa; putative exported D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 30699 dacB 3285336 dacB Bacteroides fragilis NCTC 9343 putative exported D-alanyl-D-alanine carboxypeptidase penicillin-binding protein YP_209765.1 29290 D 272559 CDS YP_209766.1 60679622 3288176 complement(30775..32274) 1 NC_003228.3 Similar to Clostridium kluyveri succinyl-CoA:coenzyme A transferase Cat1 SWALL:CAT1_CLOKL (SWALL:P38946) (538 aa) fasta scores: E(): 7.1e-84, 47.03% id in 489 aa, and to Bacteroides thetaiotaomicron putative coenzyme A transferase BT3193 SWALL:AAO78299 (EMBL:AE016939) (499 aa) fasta scores: E(): 1.1e-180, 92.58% id in 499 aa, and to Escherichia coli hypothetical protein Ygfh or B2920 SWALL:YGFH_ECOLI (SWALL:P52043) (492 aa) fasta scores: E(): 3.7e-92, 48.96% id in 484 aa; putative CoA transferase 32274 3288176 BF9343_0025 Bacteroides fragilis NCTC 9343 putative CoA transferase YP_209766.1 30775 R 272559 CDS YP_209767.1 60679623 3288029 complement(32311..32640) 1 NC_003228.3 no significant database matches; hypothetical protein 32640 3288029 BF9343_0026 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209767.1 32311 R 272559 CDS YP_209768.1 60679624 3288177 32971..34344 1 NC_003228.3 Similar to Salmonella typhimurium protein MiaB (methylthiolation of isopentenylated a37 derivatives in rRNA) or STM0670 SWALL:Q9RCI2 (EMBL:AJ249116) (474 aa) fasta scores: E(): 1.6e-62, 42.15% id in 446 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3195 SWALL:AAO78301 (EMBL:AE016939) (455 aa) fasta scores: E(): 4.1e-173, 95.16% id in 455 aa, and to Chlorobium tepidum hypothetical protein CT1993 SWALL:Q8KB05 (EMBL:AE012950) (444 aa) fasta scores: E(): 8.3e-82, 50% id in 438 aa; putative SAM/TRAM family methylase protein 34344 3288177 BF9343_0027 Bacteroides fragilis NCTC 9343 putative SAM/TRAM family methylase protein YP_209768.1 32971 D 272559 CDS YP_209769.1 60679625 3288009 34462..35880 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron alpha-L-fucosidase precursor BT2970 SWALL:AAO78076 (EMBL:AE016938) (484 aa) fasta scores: E(): 3.1e-164, 77.94% id in 476 aa, and to Bacteroides thetaiotaomicron alpha-L-fucosidase precursor BT1842 SWALL:AAO76949 (EMBL:AE016933) (438 aa) fasta scores: E(): 5.6e-32, 29.63% id in 469 aa, and to Streptomyces coelicolor putative glycosyl hydrolase SCO0279 or SCF85.07 SWALL:Q9S2D4 (EMBL:AL939104) (423 aa) fasta scores: E(): 4.8e-20, 28.46% id in 383 aa; putative alpha-L-fucosidase protein 35880 3288009 BF9343_0028 Bacteroides fragilis NCTC 9343 putative alpha-L-fucosidase protein YP_209769.1 34462 D 272559 CDS YP_209770.1 60679626 3288178 35936..38050 1 NC_003228.3 Similar to Thermoanaerobacter thermosulfurogenes beta-galactosidase LacZ SWALL:BGAL_THETU (SWALL:P26257) (716 aa) fasta scores: E(): 5.1e-27, 27.75% id in 490 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT2969 SWALL:AAO78075 (EMBL:AE016938) (702 aa) fasta scores: E(): 0, 78.77% id in 702 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT0757 SWALL:AAO75864 (EMBL:AE016929) (682 aa) fasta scores: E(): 5e-77, 38.35% id in 691 aa; putative beta-galactosidase 38050 3288178 BF9343_0029 Bacteroides fragilis NCTC 9343 putative beta-galactosidase YP_209770.1 35936 D 272559 CDS YP_209771.1 60679627 3288179 complement(38442..40181) 1 NC_003228.3 Similar to C-terminus of Prevotella bryantii two component regulatory protein XynR SWALL:Q8GBY6 (EMBL:AJ428204) (834 aa) fasta scores: E(): 1.6e-17, 22.48% id in 627 aa, and to C-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT3738 SWALL:AAO78843 (EMBL:AE016942) (1330 aa) fasta scores: E(): 4.8e-21, 26.69% id in 562 aa, and to C-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT1734 SWALL:AAO76841 (EMBL:AE016933) (1346 aa) fasta scores: E(): 5.7e-21, 26.95% id in 564 aa; putative AraC family/two component family regulatory protein 40181 3288179 BF9343_0030 Bacteroides fragilis NCTC 9343 putative AraC family/two component family regulatory protein YP_209771.1 38442 R 272559 CDS YP_209772.1 60679628 3288180 41125..42360 1 NC_003228.3 no significant database matches; hypothetical protein 42360 3288180 BF9343_0031 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209772.1 41125 D 272559 CDS YP_209773.1 60679629 3288181 42396..42704 1 NC_003228.3 no significant database matches; hypothetical protein 42704 3288181 BF9343_0032 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209773.1 42396 D 272559 CDS YP_209774.1 60679630 3288004 42808..43740 1 NC_003228.3 no significant database matches; hypothetical protein 43740 3288004 BF9343_0033 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209774.1 42808 D 272559 CDS YP_209775.1 60679631 3288182 43795..43956 1 NC_003228.3 no significant database matches; hypothetical protein 43956 3288182 BF9343_0034 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209775.1 43795 D 272559 CDS YP_209776.1 60679632 3288183 44128..44355 1 NC_003228.3 no significant database matches; hypothetical protein 44355 3288183 BF9343_0035 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209776.1 44128 D 272559 CDS YP_209777.1 60679633 3288018 complement(44481..44669) 1 NC_003228.3 no significant database matches; hypothetical protein 44669 3288018 BF9343_0036 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209777.1 44481 R 272559 CDS YP_209778.1 60679634 3288184 44820..45938 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 4.2e-06, 21.51% id in 395 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 0.0011, 21.06% id in 394 aa; hypothetical protein 45938 3288184 BF9343_0037 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209778.1 44820 D 272559 CDS YP_209779.1 60679635 3288185 45935..46054 1 NC_003228.3 no significant database matches; hypothetical protein 46054 3288185 BF9343_0038 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209779.1 45935 D 272559 CDS YP_209780.1 60679636 3288007 46027..46185 1 NC_003228.3 no significant database matches; hypothetical protein 46185 3288007 BF9343_0039 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209780.1 46027 D 272559 CDS YP_209781.1 60679637 3288186 46514..47653 1 NC_003228.3 no significant database matches; hypothetical protein 47653 3288186 BF9343_0040 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209781.1 46514 D 272559 CDS YP_209782.1 60679638 3288012 47735..47968 1 NC_003228.3 no significant database matches; hypothetical protein 47968 3288012 BF9343_0041 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209782.1 47735 D 272559 CDS YP_209783.1 60679639 3288188 47969..48088 1 NC_003228.3 no significant database matches; hypothetical protein 48088 3288188 BF9343_0042 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209783.1 47969 D 272559 CDS YP_209784.1 60679640 3288187 48234..48500 1 NC_003228.3 no significant database matches; hypothetical protein 48500 3288187 BF9343_0043 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209784.1 48234 D 272559 CDS YP_209785.1 60679641 3288006 48631..49749 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 1.5e-06, 20.69% id in 401 aa; hypothetical protein 49749 3288006 BF9343_0044 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209785.1 48631 D 272559 CDS YP_209786.1 60679642 3288189 49746..50615 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1085 SWALL:AAO76192 (EMBL:AE016930) (131 aa) fasta scores: E(): 6e-08, 40.4% id in 99 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4048 SWALL:AAO79153 (EMBL:AE016943) (373 aa) fasta scores: E(): 3.1e-06, 34.48% id in 87 aa; conserved hypothetical lipoprotein 50615 3288189 BF9343_0045 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_209786.1 49746 D 272559 CDS YP_209787.1 60679643 3288023 50660..50902 1 NC_003228.3 no significant database matches; hypothetical protein 50902 3288023 BF9343_0046 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209787.1 50660 D 272559 CDS YP_209788.1 60679644 3288190 50970..52025 1 NC_003228.3 no significant database matches; hypothetical protein 52025 3288190 BF9343_0047 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209788.1 50970 D 272559 CDS YP_209789.1 60679645 3288191 52054..53106 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0659 SWALL:AAO75766 (EMBL:AE016928) (345 aa) fasta scores: E(): 2.9e-14, 22.64% id in 340 aa; hypothetical protein 53106 3288191 BF9343_0048 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209789.1 52054 D 272559 CDS YP_209790.1 60679646 3288192 complement(53115..53219) 1 NC_003228.3 no significant database matches; hypothetical protein 53219 3288192 BF9343_0049 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209790.1 53115 R 272559 CDS YP_209791.1 60679647 3288193 53351..54817 1 NC_003228.3 no significant database matches; hypothetical protein 54817 3288193 BF9343_0050 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209791.1 53351 D 272559 CDS YP_209792.1 60679648 3288022 54894..55127 1 NC_003228.3 no significant database matches; hypothetical protein 55127 3288022 BF9343_0051 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209792.1 54894 D 272559 CDS YP_209793.1 60679649 3288194 55360..55632 1 NC_003228.3 no significant database matches; hypothetical protein 55632 3288194 BF9343_0052 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209793.1 55360 D 272559 CDS YP_209794.1 60679650 3288014 55722..56789 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0659 SWALL:AAO75766 (EMBL:AE016928) (345 aa) fasta scores: E(): 3.3e-08, 23.49% id in 349 aa; hypothetical protein 56789 3288014 BF9343_0053 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209794.1 55722 D 272559 CDS YP_209795.1 60679651 3288196 56949..57383 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0659 SWALL:AAO75766 (EMBL:AE016928) (345 aa) fasta scores: E(): 7.2e-05, 26.51% id in 132 aa; hypothetical protein 57383 3288196 BF9343_0054 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209795.1 56949 D 272559 CDS YP_209796.1 60679652 3288195 57397..57528 1 NC_003228.3 no significant database matches; hypothetical protein 57528 3288195 BF9343_0055 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209796.1 57397 D 272559 CDS YP_209797.1 60679653 3288197 57532..57783 1 NC_003228.3 no significant database matches; hypothetical protein 57783 3288197 BF9343_0056 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209797.1 57532 D 272559 CDS YP_209798.1 60679654 3288139 57856..59007 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 1.3e-11, 25.24% id in 404 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 3.3e-05, 22.16% id in 361 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0666 SWALL:AAO75773 (EMBL:AE016928) (381 aa) fasta scores: E(): 5.6e-05, 23.24% id in 327 aa; hypothetical protein 59007 3288139 BF9343_0057 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209798.1 57856 D 272559 CDS YP_209799.1 60679655 3288131 59016..59885 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1085 SWALL:AAO76192 (EMBL:AE016930) (131 aa) fasta scores: E(): 2.5e-10, 48.95% id in 96 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4048 SWALL:AAO79153 (EMBL:AE016943) (373 aa) fasta scores: E(): 6.3e-05, 27.61% id in 105 aa; putative lipoprotein 59885 3288131 BF9343_0058 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_209799.1 59016 D 272559 CDS YP_209800.1 60679656 3288198 59928..60293 1 NC_003228.3 no significant database matches; hypothetical protein 60293 3288198 BF9343_0059 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209800.1 59928 D 272559 CDS YP_209801.1 60679657 3288199 60262..61524 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 1.2e-05, 22.33% id in 412 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 1.5e-05, 31.28% id in 163 aa; hypothetical protein 61524 3288199 BF9343_0060 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209801.1 60262 D 272559 CDS YP_209802.1 60679658 3288140 61508..62083 1 NC_003228.3 no significant database matches; hypothetical protein 62083 3288140 BF9343_0061 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209802.1 61508 D 272559 CDS YP_209803.1 60679659 3288200 62080..64062 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3542 SWALL:AAO78648 (EMBL:AE016941) (400 aa) fasta scores: E(): 9.5e-13, 27.23% id in 426 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3420 SWALL:AAO78526 (EMBL:AE016940) (508 aa) fasta scores: E(): 1.3e-10, 26.54% id in 437 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0668 SWALL:AAO75775 (EMBL:AE016928) (649 aa) fasta scores: E(): 4.2e-07, 28.76% id in 671 aa; hypothetical protein 64062 3288200 BF9343_0062 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209803.1 62080 D 272559 CDS YP_209804.1 60679660 3288201 64085..64219 1 NC_003228.3 no significant database matches; hypothetical protein 64219 3288201 BF9343_0063 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209804.1 64085 D 272559 CDS YP_209805.1 60679661 3288143 64260..65111 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3209 SWALL:AAO78315 (EMBL:AE016939) (279 aa) fasta scores: E(): 1.3e-94, 80.64% id in 279 aa, and to Chlorobium tepidum hypothetical protein CT0759 SWALL:Q8KED0 (EMBL:AE012845) (312 aa) fasta scores: E(): 2.4e-17, 30.34% id in 290 aa, and to Shewanella oneidensis conserved domain protein SO3267 SWALL:Q8EC77 (EMBL:AE015763) (303 aa) fasta scores: E(): 5e-10, 28.33% id in 240 aa; hypothetical protein 65111 3288143 BF9343_0064 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209805.1 64260 D 272559 CDS YP_209806.1 60679662 3288974 65111..65992 1 NC_003228.3 Similar to Cytophaga johnsonae cell division protein FtsX SWALL:Q9RB39 (EMBL:AF169967) (291 aa) fasta scores: E(): 1.2e-30, 34.82% id in 290 aa, and to Bacteroides thetaiotaomicron cell division protein FtsX BT3210 SWALL:AAO78316 (EMBL:AE016939) (293 aa) fasta scores: E(): 5.4e-91, 83.61% id in 293 aa, and to Chlorobium tepidum cell division protein, putative CT0315 SWALL:Q8KFL1 (EMBL:AE012810) (284 aa) fasta scores: E(): 2.6e-16, 29.3% id in 273 aa; putative cell division protein 65992 ftsX 3288974 ftsX Bacteroides fragilis NCTC 9343 putative cell division protein YP_209806.1 65111 D 272559 CDS YP_209807.1 60679663 3288202 66033..66266 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3211 SWALL:AAO78317 (EMBL:AE016939) (77 aa) fasta scores: E(): 1.9e-24, 83.11% id in 77 aa, and to Cytophaga johnsonae FJO13 SWALL:Q9RB38 (EMBL:AF169967) (85 aa) fasta scores: E(): 2.8e-10, 48.61% id in 72 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0967 SWALL:AAO76074 (EMBL:AE016929) (73 aa) fasta scores: E(): 5.3e-08, 38.8% id in 67 aa; hypothetical protein 66266 3288202 BF9343_0066 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209807.1 66033 D 272559 CDS YP_209808.1 60679664 3288204 66273..67073 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 putative undecaprenol kinase Upk or BacA or B3057 or Z4410 or ECS3940 SWALL:UPK_ECOLI (SWALL:P31054) (273 aa) fasta scores: E(): 1.7e-26, 36.56% id in 268 aa, and to Bacteroides thetaiotaomicron putative bacitracin resistance protein BT3212 SWALL:AAO78318 (EMBL:AE016939) (264 aa) fasta scores: E(): 2.9e-91, 88.3% id in 265 aa, and to Oceanobacillus iheyensis bacitracin resistance protein OB1199 SWALL:Q8CXK0 (EMBL:AP004597) (275 aa) fasta scores: E(): 2.3e-33, 41.72% id in 266 aa; putative undecaprenol kinase 67073 3288204 BF9343_0067 Bacteroides fragilis NCTC 9343 putative undecaprenol kinase YP_209808.1 66273 D 272559 CDS YP_209809.1 60679665 3288203 67081..67782 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron tRNA pseudouridine synthase B BT3213 SWALL:AAO78319 (EMBL:AE016939) (240 aa) fasta scores: E(): 1.6e-76, 83.33% id in 234 aa, and to Cytophaga johnsonae tRNA pseudouridine synthase B TruB SWALL:TRUB_CYTJO (SWALL:Q9RB36) (229 aa) fasta scores: E(): 2.7e-43, 52.94% id in 221 aa, and to Oryza sativa putative tRNA synthase SWALL:Q94HL3 (EMBL:AC079022) (525 aa) fasta scores: E(): 5.1e-31, 45.17% id in 228 aa. Although the similarities are to the entire proteins, only the N-terminal domain of the TruB family pseudouridylate synthase is present; putative tRNA pseudouridine synthase 67782 3288203 BF9343_0068 Bacteroides fragilis NCTC 9343 putative tRNA pseudouridine synthase YP_209809.1 67081 D 272559 CDS YP_209810.1 60679666 3288205 67830..68888 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA or B0405 or Z0504 or ECS0456 or SF0342 SWALL:QUEA_ECOLI (SWALL:P21516) (356 aa) fasta scores: E(): 5.2e-44, 38.46% id in 351 aa, and to Bacteroides thetaiotaomicron S-adenosylmethionine:tRNA ribosyltransferase-isomerase BT3214 SWALL:AAO78320 (EMBL:AE016939) (352 aa) fasta scores: E(): 5.1e-132, 93.46% id in 352 aa, and to Chlorobium tepidum S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA-2 or CT1316 SWALL:Q8KCU4 (EMBL:AE012891) (346 aa) fasta scores: E(): 7.2e-65, 49% id in 351 aa; putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase 68888 3288205 BF9343_0069 Bacteroides fragilis NCTC 9343 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_209810.1 67830 D 272559 CDS YP_209811.1 60679667 3285384 68888..69349 1 NC_003228.3 Similar to Porphyromonas gingivalis 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK SWALL:HPPK_PORGI (SWALL:O83019) (147 aa) fasta scores: E(): 3e-21, 49.64% id in 139 aa, and to Bacteroides thetaiotaomicron 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine BT3216 SWALL:AAO78322 (EMBL:AE016939) (160 aa) fasta scores: E(): 3.1e-35, 66.01% id in 153 aa, and to the C-terminus of Streptococcus pneumoniae bifunctional folate synthesis protein [includes: dihydroneopterin aldolase suld or spr0269 SWALL:AAK99073 (EMBL:AE008408) (270 aa) fasta scores: E(): 3.6e-19, 42.38% id in 151 aa; putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (HPPK) 69349 3285384 BF9343_0070 Bacteroides fragilis NCTC 9343 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (HPPK) YP_209811.1 68888 D 272559 CDS YP_209812.1 60679668 3289148 69732..71024 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri S-adenosylmethionine synthetase MetK or MetX or B2942 or c3528 or Z4287 or ECS3818 or SF2933 SWALL:METK_ECOLI (SWALL:P04384) (383 aa) fasta scores: E(): 1.5e-37, 52.33% id in 428 aa, and to Bacteroides thetaiotaomicron S-adenosylmethionine synthetase BT3219 SWALL:AAO78325 (EMBL:AE016939) (430 aa) fasta scores: E(): 2.4e-144, 90.93% id in 430 aa, and to Deinococcus radiodurans s-adenosylmethionine synthetase MetK or dr0640 SWALL:METK_DEIRA (SWALL:Q9RWM6) (408 aa) fasta scores: E(): 3.4e-50, 51.47% id in 408 aa; putative S-adenosylmethionine synthetase 71024 metK 3289148 metK Bacteroides fragilis NCTC 9343 putative S-adenosylmethionine synthetase YP_209812.1 69732 D 272559 CDS YP_209813.1 60679669 3285929 71156..71752 1 NC_003228.3 Similar to Eikenella corrodens lysine decarboxylase (fragment) SWALL:Q9Z4R8 (EMBL:U89166) (183 aa) fasta scores: E(): 1.8e-19, 47.48% id in 139 aa, and to Bacteroides thetaiotaomicron putative lysine decarboxylase BT3224 SWALL:AAO78330 (EMBL:AE016939) (195 aa) fasta scores: E(): 1.3e-61, 81.53% id in 195 aa, and to Ralstonia solanacearum hypothetical protein RSC2087 RSC2087 or RS03652 SWALL:Q8XXM6 (EMBL:AL646068) (194 aa) fasta scores: E(): 9.5e-28, 44.44% id in 180 aa; putative lysine decarboxylase 71752 3285929 BF9343_0072 Bacteroides fragilis NCTC 9343 putative lysine decarboxylase YP_209813.1 71156 D 272559 CDS YP_209814.1 60679670 3288206 71749..72579 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3225 SWALL:AAO78331 (EMBL:AE016939) (240 aa) fasta scores: E(): 6.2e-67, 72.72% id in 231 aa; hypothetical protein 72579 3288206 BF9343_0073 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209814.1 71749 D 272559 CDS YP_209815.1 60679671 3288208 72584..73336 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3226 SWALL:AAO78332 (EMBL:AE016939) (163 aa) fasta scores: E(): 1e-56, 92.02% id in 163 aa, and to Oceanobacillus iheyensis uroporphyrinogen-III synthase ob2067 SWALL:Q8EPM9 (EMBL:AP004599) (252 aa) fasta scores: E(): 0.039, 22.31% id in 242 aa, and to Chlorobium vibrioforme uroporphyrinogen-III synthase hemD SWALL:HEM4_CHLVI (SWALL:Q59335) (246 aa) fasta scores: E(): 0.16, 20.23% id in 252 aa; possible uroporphyrinogen-III synthase 73336 3288208 BF9343_0074 Bacteroides fragilis NCTC 9343 possible uroporphyrinogen-III synthase YP_209815.1 72584 D 272559 CDS YP_209816.1 60679672 3288207 73484..73807 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ribonuclease P protein component BT3227 SWALL:AAO78333 (EMBL:AE016939) (109 aa) fasta scores: E(): 1.3e-24, 72.89% id in 107 aa, and to Chlorobium tepidum ribonuclease P protein component RnpA or CT0004 SWALL:RNPA_CHLTE (SWALL:Q8KGG4) (154 aa) fasta scores: E(): 0.0019, 35.96% id in 114 aa, and to Escherichia coli, and Shigella flexneri ribonuclease p protein component RnpA or B3704 or SF3760 SWALL:RNPA_ECOLI (SWALL:P06277) (119 aa) fasta scores: E(): 0.42, 50% id in 34 aa; possible ribonuclease P component 73807 3288207 BF9343_0075 Bacteroides fragilis NCTC 9343 possible ribonuclease P component YP_209816.1 73484 D 272559 CDS YP_209817.1 60679673 3288209 73804..74025 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3228 SWALL:AAO78334 (EMBL:AE016939) (91 aa) fasta scores: E(): 7e-27, 82.19% id in 73 aa, and to Neisseria meningitidis hypothetical protein NMA0549 or NMB1906 SWALL:Y549_NEIMA (SWALL:Q9JW47) (73 aa) fasta scores: E(): 6.6e-19, 65.75% id in 73 aa, and to Fusobacterium nucleatum hypothetical protein Fn0003 SWALL:Y003_FUSNN (SWALL:Q8RHA5) (82 aa) fasta scores: E(): 3.1e-16, 63.76% id in 69 aa; hypothetical protein 74025 3288209 BF9343_0076 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209817.1 73804 D 272559 CDS YP_209818.1 60679674 3285899 74032..74667 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TatD-related DNAse BT3229 SWALL:AAO78335 (EMBL:AE016939) (229 aa) fasta scores: E(): 2.4e-29, 42.79% id in 222 aa, and to Shewanella oneidensis hydrolase, TatD family so1213 SWALL:Q8EHK8 (EMBL:AE015565) (256 aa) fasta scores: E(): 1.6e-13, 35.09% id in 151 aa, and to Vibrio vulnificus Mg-dependent DNAse VV11722 SWALL:Q8DBT5 (EMBL:AE016802) (265 aa) fasta scores: E(): 9.4e-10, 28.94% id in 190 aa; putative tatD-related DNAse protein 74667 3285899 BF9343_0077 Bacteroides fragilis NCTC 9343 putative tatD-related DNAse protein YP_209818.1 74032 D 272559 CDS YP_209819.1 60679675 3288042 74735..76027 1 NC_003228.3 Similar to Bacillus subtilis tyrosyl-tRNA synthetase 1 TyrS SWALL:SYY1_BACSU (SWALL:P22326) (422 aa) fasta scores: E(): 4e-72, 45.95% id in 433 aa, and to Bacteroides thetaiotaomicron tyrosyl-tRNA synthetase BT3230 SWALL:AAO78336 (EMBL:AE016939) (430 aa) fasta scores: E(): 3.5e-159, 92.32% id in 430 aa, and to Enterococcus faecalis V583 tyrosyl-tRNA synthetase TryS-2 SWALL:AAO81513 (EMBL:AE016952) (420 aa) fasta scores: E(): 1.1e-72, 47.77% id in 427 aa; putative tyrosyl-tRNA synthetase 1 76027 tyrS 3288042 tyrS Bacteroides fragilis NCTC 9343 putative tyrosyl-tRNA synthetase 1 YP_209819.1 74735 D 272559 CDS YP_209820.1 60679676 3286375 complement(76140..79412) 1 NC_003228.3 Similar to Streptomyces coelicolor tricorn protease homolog 1 Tri1 or sco2549 or scc77.16C SWALL:TRI1_STRCO (SWALL:Q9RDE2) (1067 aa) fasta scores: E(): 4.7e-27, 23.81% id in 1121 aa, and to Prevotella sp. RS2 MdsD protein precursor SWALL:Q9L5V8 (EMBL:AF248951) (1073 aa) fasta scores: E(): 9.3e-177, 44.56% id in 1086 aa, and to Bacteroides thetaiotaomicron putative tricorn-like protease BT1408 SWALL:AAO76515 (EMBL:AE016931) (1102 aa) fasta scores: E(): 3.1e-155, 76.6% id in 1103 aa; putative peptidase/protease family protein 79412 3286375 BF9343_0079 Bacteroides fragilis NCTC 9343 putative peptidase/protease family protein YP_209820.1 76140 R 272559 CDS YP_209821.1 60679677 3288210 80020..81552 1 NC_003228.3 Similar to Rhizobium meliloti choline-sulfatase BetC or r00949 or SMC00127 SWALL:BETC_RHIME (SWALL:O69787) (512 aa) fasta scores: E(): 2.5e-32, 31.64% id in 455 aa, and to Bacteroides thetaiotaomicron choline-sulfatase BT1918 SWALL:AAO77025 (EMBL:AE016933) (500 aa) fasta scores: E(): 1.2e-146, 67.36% id in 478 aa, and to Clostridium perfringens probable phosphonate monoester hydrolase CPE0231 SWALL:Q8XNV1 (EMBL:AP003186) (481 aa) fasta scores: E(): 8.4e-45, 37.39% id in 476 aa; putative choline-sulfatase 81552 3288210 BF9343_0080 Bacteroides fragilis NCTC 9343 putative choline-sulfatase YP_209821.1 80020 D 272559 CDS YP_209822.1 60679678 3288212 81676..82518 1 NC_003228.3 Similar to Erwinia chrysanthemi 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI SWALL:KDUI_ERWCH (SWALL:Q05529) (278 aa) fasta scores: E(): 3.8e-54, 49.09% id in 277 aa, and to Bacteroides thetaiotaomicron 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase BT3231 SWALL:AAO78337 (EMBL:AE016939) (280 aa) fasta scores: E(): 2e-107, 91.42% id in 280 aa, and to Bacteroides thetaiotaomicron 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase BT4106 SWALL:AAO79211 (EMBL:AE016943) (306 aa) fasta scores: E(): 1e-63, 54.67% id in 289 aa, and to Yersinia pestis 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI or YPO1725 or Y1887 SWALL:Q8ZFH8 (EMBL:AJ414150) (278 aa) fasta scores: E(): 3.2e-56, 50.54% id in 277 aa; putative 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 82518 3288212 BF9343_0081 Bacteroides fragilis NCTC 9343 putative 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YP_209822.1 81676 D 272559 CDS YP_209823.1 60679679 3287924 82585..83376 1 NC_003228.3 Similar to Escherichia coli O6 gluconate 5-dehydrogenase c0321 SWALL:Q8FKS4 (EMBL:AE016755) (266 aa) fasta scores: E(): 1.2e-71, 73.07% id in 260 aa, and to Streptococcus pneumoniae 5-keto-D-gluconate 5-reductase Gno or spr0290 SWALL:Q8DR79 (EMBL:AE008410) (271 aa) fasta scores: E(): 2.4e-83, 83.46% id in 260 aa, and to Clostridium acetobutylicum short-chain alcohol dehydrogenase family protein CAC2607 SWALL:Q97FW9 (EMBL:AE007758) (267 aa) fasta scores: E(): 4.1e-83, 84.67% id in 261 aa; putative gluconate 5-dehydrogenase 83376 gno 3287924 gno Bacteroides fragilis NCTC 9343 putative gluconate 5-dehydrogenase YP_209823.1 82585 D 272559 CDS YP_209824.1 60679680 3288211 83403..84647 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3233 SWALL:AAO78339 (EMBL:AE016939) (414 aa) fasta scores: E(): 1.4e-116, 70.45% id in 413 aa; hypothetical protein 84647 3288211 BF9343_0083 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209824.1 83403 D 272559 CDS YP_209825.1 60679681 3288213 complement(84681..85610) 1 NC_003228.3 Similar to Escherichia coli putative electron transport protein YjeS or B4166 SWALL:YJES_ECOLI (SWALL:P39288) (379 aa) fasta scores: E(): 1.6e-38, 39.35% id in 310 aa, and to Bacteroides thetaiotaomicron putative iron-sulfur cluster-binding protein BT3245 SWALL:AAO78351 (EMBL:AE016939) (343 aa) fasta scores: E(): 7.4e-55, 60% id in 340 aa, and to Pseudomonas syringae iron-sulfur cluster-binding protein PSPTO4948 SWALL:AAO58376 (EMBL:AE016873) (362 aa) fasta scores: E(): 3.4e-43, 44.07% id in 304 aa; putative iron-sulfur cluster-binding protein 85610 3288213 BF9343_0084 Bacteroides fragilis NCTC 9343 putative iron-sulfur cluster-binding protein YP_209825.1 84681 R 272559 CDS YP_209826.1 60679682 3286388 complement(85610..86224) 1 NC_003228.3 Similar to C-terminus of Streptococcus pneumoniae peptidoglycan GlcNac deacetylase PgdA SWALL:Q9K516 (EMBL:AJ251472) (463 aa) fasta scores: E(): 6.6e-16, 36.61% id in 183 aa, and to Bacteroides thetaiotaomicron polysaccharide deacetylase BT3246 SWALL:AAO78352 (EMBL:AE016939) (204 aa) fasta scores: E(): 4.7e-70, 80.39% id in 204 aa, and to Anabaena sp. polysaccharide deacetylase ALL4345 SWALL:Q8YP55 (EMBL:AP003596) (305 aa) fasta scores: E(): 1.7e-20, 39.47% id in 190 aa; putative polysaccharide deacetylase 86224 3286388 BF9343_0085 Bacteroides fragilis NCTC 9343 putative polysaccharide deacetylase YP_209826.1 85610 R 272559 CDS YP_209827.1 60679683 3288214 complement(86241..89600) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3247 SWALL:AAO78353 (EMBL:AE016939) (1124 aa) fasta scores: E(): 0, 81.3% id in 1123 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0968 SWALL:AAO76075 (EMBL:AE016929) (1044 aa) fasta scores: E(): 1.1e-128, 51.55% id in 1129 aa, and to Chlorobium tepidum hypothetical protein CT2009 SWALL:Q8KAY9 (EMBL:AE012951) (886 aa) fasta scores: E(): 9e-29, 28.85% id in 1050 aa, and to Homo sapiens hypothetical protein SWALL:AAH45556 (EMBL:BC045556) (272 aa) fasta scores: E(): 0.051, 27.27% id in 209 aa; hypothetical protein 89600 3288214 BF9343_0086 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209827.1 86241 R 272559 CDS YP_209828.1 60679684 3288215 90096..91688 1 NC_003228.3 no significant database matches; hypothetical protein 91688 3288215 BF9343_0087 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209828.1 90096 D 272559 CDS YP_209829.1 60679685 3286445 92218..93834 1 NC_003228.3 Very limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT4606 SWALL:AAO79711 (EMBL:AE016945) (394 aa) fasta scores: E(): 0.039, 21.18% id in 321 aa; hypothetical protein 93834 3286445 BF9343_0088 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209829.1 92218 D 272559 CDS YP_209830.1 60679686 3286408 93863..94621 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0003 SWALL:AAO75110 (EMBL:AE016926) (258 aa) fasta scores: E(): 1.3e-57, 64.65% id in 249 aa; hypothetical protein 94621 3286408 BF9343_0089 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209830.1 93863 D 272559 CDS YP_209831.1 60679687 3288216 complement(94794..95603) 1 NC_003228.3 Similar to Listeria monocytogenes zinc uptake system ATP-binding protein ZurA or LMO1447 SWALL:ZURA_LISMO (SWALL:Q9XDA6) (257 aa) fasta scores: E(): 9e-22, 35.74% id in 221 aa, and to Bacteroides thetaiotaomicron putative metal ABC transporter, ATP-binding protein BT3248 SWALL:AAO78354 (EMBL:AE016939) (273 aa) fasta scores: E(): 6e-55, 73.89% id in 272 aa, and to Synechocystis sp. ABC transporter SLR2044 SWALL:P73086 (EMBL:D90903) (289 aa) fasta scores: E(): 1.5e-34, 38.79% id in 250 aa; putative metal uptake system ABC transporter ATP-binding protein 95603 3288216 BF9343_0090 Bacteroides fragilis NCTC 9343 putative metal uptake system ABC transporter ATP-binding protein YP_209831.1 94794 R 272559 CDS YP_209832.1 60679688 3288220 complement(95624..96556) 1 NC_003228.3 Similar to Streptococcus pyogenes, and Streptococcus pyogenes metal ABC transporter substrate-binding lipoprotein precursor MtsA or SPY0453 or SPYM3_0318 or SPS1539 SWALL:MTSA_STRPY (SWALL:Q9A157) (310 aa) fasta scores: E(): 1e-14, 27.11% id in 284 aa, and to Bacteroides thetaiotaomicron putative zinc ABC transporter, zinc-binding protein BT3249 SWALL:AAO78355 (EMBL:AE016939) (308 aa) fasta scores: E(): 1.6e-80, 75.17% id in 294 aa, and to Chlorobium tepidum adhesion protein, putative CT2106 SWALL:Q8KAQ0 (EMBL:AE012959) (344 aa) fasta scores: E(): 3.1e-34, 35.58% id in 281 aa; putative metal ABC transporter substrate-binding precursor 96556 3288220 BF9343_0091 Bacteroides fragilis NCTC 9343 putative metal ABC transporter substrate-binding precursor YP_209832.1 95624 R 272559 CDS YP_209833.1 60679689 3288219 complement(96562..97338) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3250 SWALL:AAO78356 (EMBL:AE016939) (240 aa) fasta scores: E(): 1.5e-55, 65.73% id in 251 aa, and to Escherichia coli O157:H7 hypothetical protein YfcK or Z3587 or ECS3208 SWALL:YFCK_ECO57 (SWALL:Q8XCQ7) (668 aa) fasta scores: E(): 3.5e-10, 31.12% id in 241 aa, and to Escherichia coli O6 hypothetical protein YfcK or C2870 SWALL:Q8FFH0 (EMBL:AE016764) (688 aa) fasta scores: E(): 3.6e-10, 32.08% id in 240 aa; hypothetical protein 97338 3288219 BF9343_0092 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209833.1 96562 R 272559 CDS YP_209834.1 60679690 3288221 complement(97347..97823) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative integral membrane protein BT3251 SWALL:AAO78357 (EMBL:AE016939) (159 aa) fasta scores: E(): 4.9e-48, 78.98% id in 157 aa, and to Methanosarcina acetivorans hypothetical protein Ma3555 SWALL:Q8TK61 (EMBL:AE011064) (153 aa) fasta scores: E(): 2.4e-13, 33.09% id in 142 aa, and to Campylobacter jejuni putative integral membrane protein cj0341C SWALL:Q9PIF9 (EMBL:AL139074) (147 aa) fasta scores: E(): 3.7e-13, 34.32% id in 134 aa; putative transmembrane protein 97823 3288221 BF9343_0093 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_209834.1 97347 R 272559 CDS YP_209835.1 60679691 3286440 complement(97808..98800) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3252 SWALL:AAO78358 (EMBL:AE016939) (336 aa) fasta scores: E(): 2.7e-86, 63.09% id in 336 aa; putative transmembrane protein 98800 3286440 BF9343_0094 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_209835.1 97808 R 272559 CDS YP_209836.1 60679692 3289339 complement(98800..100074) 1 NC_003228.3 Similar to Escherichia coli phosphoribosylamine--glycine ligase PurD or B4005 SWALL:PUR2_ECOLI (SWALL:P15640) (429 aa) fasta scores: E(): 5.5e-69, 48.25% id in 429 aa, and to Bacteroides thetaiotaomicron phosphoribosylamine--glycine ligase BT3253 SWALL:AAO78359 (EMBL:AE016939) (424 aa) fasta scores: E(): 1.1e-136, 83.96% id in 424 aa, and to Pseudomonas putida phosphoribosylamine--glycine ligase PurD or PP4823 SWALL:AAN70392 (EMBL:AE016792) (431 aa) fasta scores: E(): 8.1e-71, 49.06% id in 428 aa; putative phosphoribosylamine--glycine ligase 100074 purD 3289339 purD Bacteroides fragilis NCTC 9343 putative phosphoribosylamine--glycine ligase YP_209836.1 98800 R 272559 CDS YP_209837.1 60679693 3286331 complement(100096..102255) 1 NC_003228.3 Similar to Xanthomonas maltophilia dipeptidyl peptidase IV SWALL:P95782 (EMBL:D83263) (741 aa) fasta scores: E(): 2.2e-56, 32.47% id in 622 aa, and to Bacteroides thetaiotaomicron dipeptidyl peptidase IV BT3254 SWALL:AAO78360 (EMBL:AE016939) (732 aa) fasta scores: E(): 1.7e-113, 69.95% id in 729 aa, and to Xanthomonas axonopodis dipeptidyl peptidase IV XAC4046 SWALL:Q8PFD7 (EMBL:AE012053) (757 aa) fasta scores: E(): 1.2e-57, 31.48% id in 632 aa; putative exported dipeptidyl peptidase IV 102255 3286331 BF9343_0096 Bacteroides fragilis NCTC 9343 putative exported dipeptidyl peptidase IV YP_209837.1 100096 R 272559 CDS YP_209838.1 60679694 3288222 complement(102391..103731) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative N6-adenine-specific DNA methylase BT3255 SWALL:AAO78361 (EMBL:AE016939) (489 aa) fasta scores: E(): 4.3e-143, 78.11% id in 489 aa, and to Synechocystis sp. hypothetical protein SLR0064 SWALL:Y064_SYNY3 (SWALL:Q55156) (384 aa) fasta scores: E(): 2.2e-46, 38.48% id in 369 aa, and to Vibrio parahaemolyticus putative N6-adenine-specific DNA methylase vp1597 SWALL:BAC59860 (EMBL:AP005078) (707 aa) fasta scores: E(): 4.4e-41, 35.06% id in 405 aa; putative methylase 103731 3288222 BF9343_0097 Bacteroides fragilis NCTC 9343 putative methylase YP_209838.1 102391 R 272559 CDS YP_209839.1 60679695 3288224 complement(103809..104708) 1 NC_003228.3 Similar to Synechococcus sp. serine acetyltransferase, plasmid srpH SWALL:SRPH_SYNP7 (SWALL:Q59967) (319 aa) fasta scores: E(): 9.8e-49, 48.28% id in 292 aa, and to Bacteroides thetaiotaomicron serine acetyltransferase BT3256 SWALL:AAO78362 (EMBL:AE016939) (300 aa) fasta scores: E(): 1.6e-103, 89.03% id in 301 aa, and to Synechococcus sp. CysE sex3037 SWALL:AAM81165 (EMBL:AF441790) (319 aa) fasta scores: E(): 9.8e-49, 48.28% id in 292 aa; putative serine acetyltransferase 104708 3288224 BF9343_0098 Bacteroides fragilis NCTC 9343 putative serine acetyltransferase YP_209839.1 103809 R 272559 CDS YP_209840.1 60679696 3288223 104835..106865 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT3257 SWALL:AAO78363 (EMBL:AE016939) (692 aa) fasta scores: E(): 1.6e-160, 61.41% id in 679 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YpdA or b2380 or Z3645 or ECS3260 SWALL:YPDA_ECOLI (SWALL:P76523) (565 aa) fasta scores: E(): 4.9e-11, 25.67% id in 335 aa, and to Escherichia coli O6 hypothetical protein YpdA or c2919 SWALL:Q8FFE1 (EMBL:AE016764) (565 aa) fasta scores: E(): 7.6e-11, 25.37% id in 335 aa; putative two-component regulator sensor kinase 106865 3288223 BF9343_0099 Bacteroides fragilis NCTC 9343 putative two-component regulator sensor kinase YP_209840.1 104835 D 272559 CDS YP_209841.1 60679697 3288225 106878..107633 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system response regulator BT3258 SWALL:AAO78364 (EMBL:AE016939) (210 aa) fasta scores: E(): 1.7e-56, 70.47% id in 210 aa, and to Vibrio cholerae hypothetical response regulatory protein Vc0693 SWALL:Q9KU36 (EMBL:AE004155) (237 aa) fasta scores: E(): 5e-13, 31.2% id in 250 aa, and to Vibrio parahaemolyticus hypothetical response regulatory protein Vp0538 SWALL:BAC58801 (EMBL:AP005074) (242 aa) fasta scores: E(): 3.4e-12, 40.32% id in 124 aa; putative two-component response regulator 107633 3288225 BF9343_0100 Bacteroides fragilis NCTC 9343 putative two-component response regulator YP_209841.1 106878 D 272559 CDS YP_209842.1 60679698 3285934 107845..107961 1 NC_003228.3 no significant database matches; hypothetical protein 107961 3285934 BF9343_0101 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209842.1 107845 D 272559 CDS YP_209843.1 60679699 3285891 complement(108009..108404) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3259 SWALL:AAO78365 (EMBL:AE016939) (131 aa) fasta scores: E(): 1.3e-34, 68.7% id in 131 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2500 SWALL:AAO77607 (EMBL:AE016936) (172 aa) fasta scores: E(): 2.7e-10, 29.54% id in 132 aa; hypothetical protein 108404 3285891 BF9343_0102 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209843.1 108009 R 272559 CDS YP_209844.1 60679700 3287975 complement(108674..111499) 1 NC_003228.3 Similar to Escherichia coli DNA polymerase I PolA or ResA or B3863 SWALL:DPO1_ECOLI (SWALL:P00582) (928 aa) fasta scores: E(): 2.1e-121, 44.57% id in 949 aa, and to Bacteroides thetaiotaomicron DNA polymerase I BT3260 SWALL:Q8A2P5 (EMBL:AE016939) (949 aa) fasta scores: E(): 1.7e-191, 83.26% id in 950 aa, and to Yersinia pestis DNA polymerase I PolA or YPO0017 or Y3811 SWALL:Q8ZJS1 (EMBL:AJ414141) (932 aa) fasta scores: E(): 7.2e-125, 42.66% id in 947 aa; putative DNA polymerase I 111499 polA 3287975 polA Bacteroides fragilis NCTC 9343 putative DNA polymerase I YP_209844.1 108674 R 272559 CDS YP_209845.1 60679701 3288226 111567..112541 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri octaprenyl-diphosphate synthase IspB or Cel or B3187 or SF3227 SWALL:ISPB_ECOLI (SWALL:P19641) (323 aa) fasta scores: E(): 1.2e-27, 32.66% id in 300 aa, and to Bacteroides thetaiotaomicron octaprenyl-diphosphate synthase BT3261 SWALL:AAO78367 (EMBL:AE016939) (324 aa) fasta scores: E(): 3.7e-94, 75.61% id in 324 aa, and to Chlorobium tepidum polyprenyl synthetase CT1206 SWALL:Q8KD49 (EMBL:AE012881) (324 aa) fasta scores: E(): 2.4e-36, 34.87% id in 324 aa; putative octaprenyl-diphosphate synthase 112541 3288226 BF9343_0104 Bacteroides fragilis NCTC 9343 putative octaprenyl-diphosphate synthase YP_209845.1 111567 D 272559 CDS YP_209846.1 60679702 3288227 complement(112551..113258) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3262 SWALL:AAO78368 (EMBL:AE016939) (226 aa) fasta scores: E(): 7.4e-21, 34.45% id in 209 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3652 SWALL:AAO78757 (EMBL:AE016941) (262 aa) fasta scores: E(): 2.5e-07, 23.68% id in 228 aa; hypothetical protein 113258 3288227 BF9343_0105 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209846.1 112551 R 272559 CDS YP_209847.1 60679703 3285922 113306..113479 1 NC_003228.3 no significant database matches; hypothetical protein 113479 3285922 BF9343_0106 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209847.1 113306 D 272559 CDS YP_209848.1 60679704 3288228 complement(113659..114555) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 deoxyribose-phosphate aldolase DeoC or Dra or ThyR or B4381 or C5465 SWALL:DEOC_ECOLI (SWALL:P00882) (259 aa) fasta scores: E(): 1.1e-27, 41.39% id in 244 aa, and to Bacteroides thetaiotaomicron putative deoxyribose-phosphate aldolase BT3263 SWALL:AAO78369 (EMBL:AE016939) (300 aa) fasta scores: E(): 2.5e-97, 83.83% id in 297 aa, and to Caenorhabditis elegans putative deoxyribose-phosphate aldolase f09e5.3 SWALL:DEOC_CAEEL (SWALL:Q19264) (303 aa) fasta scores: E(): 6.6e-36, 43.4% id in 288 aa; putative deoxyribose-phosphate aldolase 114555 3288228 BF9343_0107 Bacteroides fragilis NCTC 9343 putative deoxyribose-phosphate aldolase YP_209848.1 113659 R 272559 CDS YP_209849.1 60679705 3288230 complement(114548..114886) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3264 SWALL:AAO78370 (EMBL:AE016939) (112 aa) fasta scores: E(): 1.6e-34, 81.25% id in 112 aa, and to Leptospira interrogans conserved hypothetical protein LB212 SWALL:Q8EXJ6 (EMBL:AE011608) (114 aa) fasta scores: E(): 2.7e-22, 58.87% id in 107 aa, and to Staphylococcus aureus hypothetical protein sav1459 sav1459 or sa1292 or mw1349 SWALL:Q99U30 (EMBL:AP003362) (105 aa) fasta scores: E(): 5.7e-12, 45.45% id in 99 aa; hypothetical protein 114886 3288230 BF9343_0108 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209849.1 114548 R 272559 CDS YP_209850.1 60679706 3285235 complement(114886..115338) 1 NC_003228.3 Similar to Bacillus subtilis putative D-tyrosyl-tRNA Dtd SWALL:DTD_BACSU (SWALL:O32042) (146 aa) fasta scores: E(): 4.5e-24, 51.37% id in 146 aa, and to Bacteroides thetaiotaomicron putative D-tyrosyl-tRNA deacylase BT3265 SWALL:AAO78371 (EMBL:AE016939) (150 aa) fasta scores: E(): 4.7e-50, 86% id in 150 aa, and to Enterococcus faecalis hypothetical protein EF1973 SWALL:AAO81719 (EMBL:AE016953) (148 aa) fasta scores: E(): 3.3e-29, 58.38% id in 149 aa; putative D-tyrosyl-tRNA acylase 115338 dtd 3285235 dtd Bacteroides fragilis NCTC 9343 putative D-tyrosyl-tRNA acylase YP_209850.1 114886 R 272559 CDS YP_209851.1 60679707 3288891 complement(115384..117210) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 UvrABC system protein c UvrC or B1913 or C2326 or Z3001 or ECS2651 SWALL:UVRC_ECOLI (SWALL:P07028) (610 aa) fasta scores: E(): 4.1e-55, 32.18% id in 609 aa, and to Bacteroides thetaiotaomicron excinuclease ABC subunit C BT3266 SWALL:AAO78372 (EMBL:AE016939) (609 aa) fasta scores: E(): 1.3e-194, 86.51% id in 608 aa, and to Eubacterium acidaminophilum UvrC protein uvrC SWALL:Q93SG1 (EMBL:AJ312124) (607 aa) fasta scores: E(): 2.9e-62, 36.34% id in 597 aa; putative excinuclease UvrC protein 117210 uvrC 3288891 uvrC Bacteroides fragilis NCTC 9343 putative excinuclease UvrC protein YP_209851.1 115384 R 272559 CDS YP_209852.1 60679708 3289089 complement(117263..117799) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 adenine phosphoribosyltransferase Apt or B0469 or C0588 SWALL:APT_ECOLI (SWALL:P07672) (183 aa) fasta scores: E(): 2.6e-25, 50.62% id in 160 aa, and to Bacteroides thetaiotaomicron adenine phosphoribosyltransferase BT3267 SWALL:AAO78373 (EMBL:AE016939) (176 aa) fasta scores: E(): 9.5e-54, 86.51% id in 178 aa, and to Leptospira interrogans adenine phosphoribosyltransferase LB176 SWALL:Q8EXN2 (EMBL:AE011606) (177 aa) fasta scores: E(): 1.1e-26, 50.29% id in 169 aa, and to Triticum aestivum adenine phosphoribosyltransferase 1 apt1 SWALL:APT1_WHEAT (SWALL:Q43199) (181 aa) fasta scores: E(): 1.5e-25, 50% id in 156 aa; putative adenine phosphoribosyltransferase 117799 apt 3289089 apt Bacteroides fragilis NCTC 9343 putative adenine phosphoribosyltransferase YP_209852.1 117263 R 272559 CDS YP_209853.1 60679709 3286724 complement(117850..119727) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 glucose inhibited division protein A GidA or B3741 or c4669 SWALL:GIDA_ECOLI (SWALL:P17112) (629 aa) fasta scores: E(): 1.3e-104, 47.74% id in 622 aa, and to Bacteroides thetaiotaomicron glucose-inhibited division protein a BT3268 SWALL:AAO78374 (EMBL:AE016939) (628 aa) fasta scores: E(): 1e-216, 88.21% id in 628 aa, and to Chlorobium tepidum glucose inhibited division protein A GidA or CT2283 SWALL:Q8KA85 (EMBL:AE012973) (621 aa) fasta scores: E(): 8.6e-116, 50.64% id in 622 aa; putative glucose inhibited division protein A 119727 gidA 3286724 gidA Bacteroides fragilis NCTC 9343 putative glucose inhibited division protein A YP_209853.1 117850 R 272559 CDS YP_209854.1 60679710 3288229 120464..122152 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4492 SWALL:AAO79597 (EMBL:AE016945) (578 aa) fasta scores: E(): 5.7e-40, 30.42% id in 572 aa, and to Bacteroides thetaiotaomicron TPR-repeat-containing protein BT3220 SWALL:AAO78326 (EMBL:AE016939) (578 aa) fasta scores: E(): 1.4e-22, 24.69% id in 567 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0240 SWALL:AAO75347 (EMBL:AE016926) (584 aa) fasta scores: E(): 8.9e-18, 24.39% id in 578 aa; putative lipoprotein 122152 3288229 BF9343_0113 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_209854.1 120464 D 272559 CDS YP_209855.1 60679711 3286369 122322..122672 1 NC_003228.3 no significant database matches; hypothetical protein 122672 3286369 BF9343_0114 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209855.1 122322 D 272559 CDS YP_209856.1 60679712 3288231 122708..123931 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative pyrogenic exotoxin B BT2451 SWALL:Q8A4Z6 (EMBL:AE016936) (426 aa) fasta scores: E(): 1.1e-05, 24.13% id in 435 aa; hypothetical protein 123931 3288231 BF9343_0115 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209856.1 122708 D 272559 CDS YP_209857.1 60679713 3286359 123949..124329 1 NC_003228.3 Low similarity to Bacteroides thetaiotaomicron hypothetical protein BT0224 SWALL:AAO75331 (EMBL:AE016926) (134 aa) fasta scores: E(): 0.015, 25.54% id in 137 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2452 SWALL:AAO77559 (EMBL:AE016936) (131 aa) fasta scores: E(): 0.21, 27.41% id in 124 aa; hypothetical protein 124329 3286359 BF9343_0116 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209857.1 123949 D 272559 CDS YP_209858.1 60679714 3288232 complement(124621..125040) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with conserved domain BT3283 SWALL:AAO78389 (EMBL:AE016939) (137 aa) fasta scores: E(): 1.6e-49, 86.13% id in 137 aa, and to Chlorobium tepidum hypothetical protein CT1383 SWALL:Q8KCN1 (EMBL:AE012896) (137 aa) fasta scores: E(): 1.7e-12, 38.05% id in 113 aa, and to Treponema pallidum hypothetical UPF0054 protein TP0650 SWALL:Y650_TREPA (SWALL:O83656) (160 aa) fasta scores: E(): 3.5e-09, 39.42% id in 104 aa; hypothetical protein 125040 3288232 BF9343_0117 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209858.1 124621 R 272559 CDS YP_209859.1 60679715 3288234 125239..125361 1 NC_003228.3 no significant database matches; hypothetical protein 125361 3288234 BF9343_0118 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209859.1 125239 D 272559 CDS YP_209860.1 60679716 3288233 125490..125915 1 NC_003228.3 no significant database matches; hypothetical protein 125915 3288233 BF9343_0119 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209860.1 125490 D 272559 CDS YP_209861.1 60679717 3288235 126080..126961 1 NC_003228.3 Similar to Shewanella oneidensis hypothetical protein SO0764 SWALL:Q8EIS1 (EMBL:AE015521) (269 aa) fasta scores: E(): 2e-24, 41.32% id in 196 aa; hypothetical protein 126961 3288235 BF9343_0120 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209861.1 126080 D 272559 CDS YP_209862.1 60679718 3286315 127330..127464 1 NC_003228.3 no significant database matches; hypothetical protein 127464 3286315 BF9343_0121 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209862.1 127330 D 272559 CDS YP_209863.1 60679719 3286404 complement(127629..129254) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4606 SWALL:AAO79711 (EMBL:AE016945) (394 aa) fasta scores: E(): 0.00073, 22.98% id in 322 aa; hypothetical protein 129254 3286404 BF9343_0122 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209863.1 127629 R 272559 CDS YP_209864.1 60679720 3288236 129652..129759 1 NC_003228.3 no significant database matches; hypothetical protein 129759 3288236 BF9343_0123 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209864.1 129652 D 272559 CDS YP_209865.1 60679721 3288238 complement(129876..131108) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3284 SWALL:AAO78390 (EMBL:AE016939) (410 aa) fasta scores: E(): 1e-133, 87.31% id in 410 aa, and N-terminus to residue 198 similar to Bacillus subtilis spore maturation protein A SpmA SWALL:SPMA_BACSU (SWALL:P35157) (196 aa) fasta scores: E(): 1.4e-24, 43.45% id in 191 aa, and C-terminus from residue 243 is similar to Bacillus subtilis spore maturation protein B SpmB SWALL:SPMB_BACSU (SWALL:P35158) (179 aa) fasta scores: E(): 1.8e-15, 38.46% id in 169 aa; putative transmembrane spore maturation-like protein 131108 3288238 BF9343_0124 Bacteroides fragilis NCTC 9343 putative transmembrane spore maturation-like protein YP_209865.1 129876 R 272559 CDS YP_209866.1 60679722 3288237 131215..131913 1 NC_003228.3 Similar to Chlorobium tepidum hypothetical protein CT1302 SWALL:Q8KCV8 (EMBL:AE012890) (232 aa) fasta scores: E(): 1.4e-47, 54.62% id in 227 aa, and to Rickettsia conorii hypothetical protein RC0866 SWALL:Q92HA5 (EMBL:AE008641) (139 aa) fasta scores: E(): 7.3e-21, 43.7% id in 135 aa, and to Methanosarcina mazei hypothetical protein MM0566 SWALL:Q8PZC8 (EMBL:AE013281) (239 aa) fasta scores: E(): 2.4e-10, 27.38% id in 241 aa, and to Methanosarcina acetivorans predicted protein MA3673 SWALL:Q8TJV4 (EMBL:AE011076) (239 aa) fasta scores: E(): 1.1e-09, 28.68% id in 244 aa; hypothetical protein 131913 3288237 BF9343_0125 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209866.1 131215 D 272559 CDS YP_209867.1 60679723 3288239 132026..132154 1 NC_003228.3 no significant database matches; hypothetical protein 132154 3288239 BF9343_0126 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209867.1 132026 D 272559 CDS YP_209868.1 60679724 3288293 132242..133270 1 NC_003228.3 Similar to Pseudomonas aeruginosa holliday junction DNA helicase RuvB or pa0967 SWALL:RUVB_PSEAE (SWALL:Q51426) (352 aa) fasta scores: E(): 7e-64, 60.31% id in 320 aa, and to Bacteroides thetaiotaomicron holliday junction DNA helicase RuvB BT3285 SWALL:AAO78391 (EMBL:AE016939) (343 aa) fasta scores: E(): 3.1e-110, 95.89% id in 341 aa, and to Chlorobium tepidum holliday junction DNA helicase RuvB or CT1630 SWALL:RUVB_CHLTE (SWALL:Q8KC00) (344 aa) fasta scores: E(): 6e-67, 61.35% id in 326 aa; putative holliday junction DNA helicase 133270 ruvB 3288293 ruvB Bacteroides fragilis NCTC 9343 putative holliday junction DNA helicase YP_209868.1 132242 D 272559 CDS YP_209869.1 60679725 3286418 133263..134795 1 NC_003228.3 Similar to Leptospira interrogans hypothetical 51.3 kDa protein SWALL:Q8VTY3 (EMBL:AF316500) (447 aa) fasta scores: E(): 6.3e-05, 21.19% id in 368 aa, and to Bacteroides thetaiotaomicron polysaccharide biosynthesis protein BT3287 SWALL:AAO78393 (EMBL:AE016939) (482 aa) fasta scores: E(): 1.4e-82, 61.24% id in 498 aa, and to Chlorobium tepidum polysaccharide biosynthesis protein CT0273 SWALL:Q8KFP9 (EMBL:AE012806) (514 aa) fasta scores: E(): 3e-27, 25.91% id in 521 aa; possible polysaccharide biosynthesis transmembrane protein 134795 3286418 BF9343_0128 Bacteroides fragilis NCTC 9343 possible polysaccharide biosynthesis transmembrane protein YP_209869.1 133263 D 272559 CDS YP_209870.1 60679726 3288240 134798..136165 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative integral membrane protein BT3288 SWALL:AAO78394 (EMBL:AE016939) (451 aa) fasta scores: E(): 6.2e-143, 84.58% id in 454 aa, and to Leptospira interrogans conserved hypothetical protein la3012 SWALL:Q8F1W6 (EMBL:AE011464) (456 aa) fasta scores: E(): 5.8e-65, 41.59% id in 440 aa, and to Chlorobium tepidum membrane protein, putative CT0488 SWALL:Q8KF44 (EMBL:AE012825) (441 aa) fasta scores: E(): 1.7e-53, 39.42% id in 449 aa; hypothetical protein 136165 3288240 BF9343_0129 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209870.1 134798 D 272559 CDS YP_209871.1 60679727 3288241 136217..138394 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3289 SWALL:AAO78395 (EMBL:AE016939) (713 aa) fasta scores: E(): 0, 78.12% id in 704 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0237 SWALL:AAO75344 (EMBL:AE016926) (695 aa) fasta scores: E(): 1e-93, 39.54% id in 703 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0236 SWALL:AAO75343 (EMBL:AE016926) (682 aa) fasta scores: E(): 1.4e-90, 38.86% id in 687 aa, and to Xylella fastidiosa hypothetical protein Xf1887 xf1887 SWALL:Q9PC94 (EMBL:AE004008) (716 aa) fasta scores: E(): 9.5e-60, 30.7% id in 723 aa; hypothetical protein 138394 3288241 BF9343_0130 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209871.1 136217 D 272559 CDS YP_209872.1 60679728 3286376 complement(138444..139307) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3290 SWALL:AAO78396 (EMBL:AE016939) (288 aa) fasta scores: E(): 1e-82, 78.47% id in 288 aa, and to Bacteroides thetaiotaomicron putative integral membrane protein BT2248 SWALL:AAO77355 (EMBL:AE016935) (284 aa) fasta scores: E(): 5.5e-36, 39.32% id in 267 aa, and to Clostridium tetani integral membrane protein CTC01885 SWALL:AAO36400 (EMBL:AE015942) (299 aa) fasta scores: E(): 2.1e-18, 29.35% id in 293 aa; putative transmembrane protein 139307 3286376 BF9343_0131 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_209872.1 138444 R 272559 CDS YP_209873.1 60679729 3286381 complement(139391..139810) 1 NC_003228.3 no significant database matches; hypothetical protein 139810 3286381 BF9343_0132 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209873.1 139391 R 272559 CDS YP_209874.1 60679730 3288242 complement(140054..141997) 1 NC_003228.3 Similar to Escherichia coli cold-shock dead-box protein A Dead or CsdA or MssB or B3162 SWALL:DEAD_ECOLI (SWALL:P23304) (628 aa) fasta scores: E(): 1.6e-51, 34.3% id in 618 aa, and to Bacteroides thetaiotaomicron ATP-dependent RNA helicase BT3303 SWALL:AAO78409 (EMBL:AE016940) (647 aa) fasta scores: E(): 8.8e-175, 84.99% id in 653 aa, and to Methanosarcina acetivorans ATP-dependent RNA helicase Dead or ma3956 SWALL:Q8TJ32 (EMBL:AE011107) (555 aa) fasta scores: E(): 3.3e-59, 38.92% id in 578 aa; putative RNA helicase dead-box protein 141997 3288242 BF9343_0133 Bacteroides fragilis NCTC 9343 putative RNA helicase dead-box protein YP_209874.1 140054 R 272559 CDS YP_209875.1 60679731 3288244 complement(142059..143114) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3304 SWALL:AAO78410 (EMBL:AE016940) (356 aa) fasta scores: E(): 4.6e-94, 68.75% id in 352 aa, and to Listeria innocua hypothetical protein LIN2049 SWALL:Q92A73 (EMBL:AL596170) (326 aa) fasta scores: E(): 9.1e-26, 34.36% id in 323 aa, and to Listeria monocytogenes hypothetical protein LMO1935 SWALL:Q8Y5X0 (EMBL:AL591981) (326 aa) fasta scores: E(): 2.7e-23, 32.19% id in 323 aa; hypothetical protein 143114 3288244 BF9343_0134 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209875.1 142059 R 272559 CDS YP_209876.1 60679732 3285260 complement(143299..144219) 1 NC_003228.3 Similar to Rhizobium leguminosarum fructokinase frK SWALL:SCRK_RHILT (SWALL:P42720) (326 aa) fasta scores: E(): 4.3e-11, 25.53% id in 282 aa, and to Bacteroides thetaiotaomicron fructokinase BT3305 SWALL:AAO78411 (EMBL:AE016940) (308 aa) fasta scores: E(): 9.5e-106, 84.26% id in 305 aa, and to Vibrio cholerae fructokinase vca0656 SWALL:Q9KLT5 (EMBL:AE004395) (323 aa) fasta scores: E(): 4.6e-13, 25.68% id in 257 aa; putative fructokinase 144219 frk 3285260 frk Bacteroides fragilis NCTC 9343 putative fructokinase YP_209876.1 143299 R 272559 CDS YP_209877.1 60679733 3288243 complement(144207..144812) 1 NC_003228.3 Similar to Leptospira interrogans polysialic acid capsule expression protein KpsF or la0046 SWALL:Q8F9Z1 (EMBL:AE011196) (322 aa) fasta scores: E(): 4.2e-21, 37.24% id in 196 aa, and to Bacteroides thetaiotaomicron putative sugar isomerase BT3306 SWALL:AAO78412 (EMBL:AE016940) (201 aa) fasta scores: E(): 8.6e-68, 91.04% id in 201 aa, and to Pseudomonas putida KpsF/GutQ family protein PP0957 SWALL:AAN66582 (EMBL:AE016777) (324 aa) fasta scores: E(): 4e-25, 43.35% id in 203 aa; putative sugar isomerase SIS-domain protein 144812 3288243 BF9343_0136 Bacteroides fragilis NCTC 9343 putative sugar isomerase SIS-domain protein YP_209877.1 144207 R 272559 CDS YP_209878.1 60679734 3288245 complement(144812..145342) 1 NC_003228.3 Similar to Eikenella corrodens lysine decarboxylase SWALL:Q9Z4R8 (EMBL:U89166) (183 aa) fasta scores: E(): 1.1e-14, 36.49% id in 137 aa, and to Bacteroides thetaiotaomicron lysine decarboxylase BT3307 SWALL:AAO78413 (EMBL:AE016940) (161 aa) fasta scores: E(): 2.6e-40, 72.5% id in 160 aa, and to Bacillus halodurans lysine decarboxylase BH2746 SWALL:Q9K9A3 (EMBL:AP001516) (190 aa) fasta scores: E(): 1.2e-17, 40.78% id in 152 aa; unknown EC_number: ORLD; putative lysine decarboxylase 145342 3288245 BF9343_0137 Bacteroides fragilis NCTC 9343 putative lysine decarboxylase YP_209878.1 144812 R 272559 CDS YP_209879.1 60679735 3286433 145471..146691 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative zinc protease YmxG BT3308 SWALL:AAO78414 (EMBL:AE016940) (406 aa) fasta scores: E(): 1.4e-139, 85.71% id in 406 aa, and to Rickettsia conorii hypothetical zinc protease RC0293 rc0293 SWALL:Q92IX7 (EMBL:AE008595) (412 aa) fasta scores: E(): 3.2e-40, 32.59% id in 405 aa, and to Cucumis melo mitochondrial processing peptidase beta subunit SWALL:Q9AXQ2 (EMBL:AF297643) (528 aa) fasta scores: E(): 3.6e-25, 30% id in 400 aa, and to Blastocladiella emersonii mitochondrial processing peptidase beta subunit, mitochondrial precursor mpp1 SWALL:Q00302 (EMBL:U41300) (465 aa) fasta scores: E(): 1.6e-24, 25.67% id in 405 aa; putative peptidase 146691 3286433 BF9343_0138 Bacteroides fragilis NCTC 9343 putative peptidase YP_209879.1 145471 D 272559 CDS YP_209880.1 60679736 3286391 complement(146857..147243) 1 NC_003228.3 no significant database matches; hypothetical protein 147243 3286391 BF9343_0139 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209880.1 146857 R 272559 CDS YP_209881.1 60679737 3288246 147455..147985 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2051 SWALL:AAO77158 (EMBL:AE016934) (178 aa) fasta scores: E(): 2.7e-15, 34.28% id in 175 aa, and to Clostridium perfringens hypothetical protein CPE0912 SWALL:Q8XLX8 (EMBL:AP003188) (181 aa) fasta scores: E(): 2.2e-13, 36.69% id in 139 aa, and low similarity to Thermoanaerobacter tengcongensis acetyltransferases RimI3 or TTE0537 SWALL:Q8RC99 (EMBL:AE013024) (149 aa) fasta scores: E(): 0.00079, 26.45% id in 155 aa; possible acetyltransferase protein 147985 3288246 BF9343_0140 Bacteroides fragilis NCTC 9343 possible acetyltransferase protein YP_209881.1 147455 D 272559 CDS YP_209882.1 60679738 3286900 complement(148132..149322) 1 NC_003228.3 Similar to Escherichia coli mannonate dehydratase UxuA or B4322 SWALL:UXUA_ECOLI (SWALL:P24215) (394 aa) fasta scores: E(): 6.2e-99, 61.89% id in 391 aa, and to Bacteroides thetaiotaomicron mannonate dehydratase BT1432 SWALL:AAO76539 (EMBL:AE016931) (389 aa) fasta scores: E(): 8.1e-131, 81.23% id in 389 aa, and to Haemophilus influenzae mannonate dehydratase UxuA or hi0055 SWALL:UXUA_HAEIN (SWALL:P44488) (394 aa) fasta scores: E(): 8.2e-100, 64.12% id in 393 aa; putative mannonate dehydratase 149322 uxuA 3286900 uxuA Bacteroides fragilis NCTC 9343 putative mannonate dehydratase YP_209882.1 148132 R 272559 CDS YP_209883.1 60679739 3287433 complement(149437..150249) 1 NC_003228.3 Similar to Bacillus stearothermophilus D-mannonate oxidoreductase UxuB SWALL:Q9ZFL6 (EMBL:AF098273) (281 aa) fasta scores: E(): 1.8e-20, 47.65% id in 277 aa, and to Bacteroides thetaiotaomicron putative oxidoreductase BT1433 SWALL:AAO76540 (EMBL:AE016931) (270 aa) fasta scores: E(): 3.4e-61, 65.92% id in 270 aa, and to Nostoc punctiforme oxidoreductase HrmU SWALL:Q51311 (EMBL:L37087) (278 aa) fasta scores: E(): 6.3e-45, 50.92% id in 271 aa; putative D-mannonate oxidoreductase 150249 uxuB 3287433 uxuB Bacteroides fragilis NCTC 9343 putative D-mannonate oxidoreductase YP_209883.1 149437 R 272559 CDS YP_209884.1 60679740 3288248 complement(150378..151022) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3317 SWALL:AAO78423 (EMBL:AE016940) (209 aa) fasta scores: E(): 1.4e-73, 83.49% id in 206 aa; hypothetical protein 151022 3288248 BF9343_0143 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209884.1 150378 R 272559 CDS YP_209885.1 60679741 3288247 complement(151086..152021) 1 NC_003228.3 Low similarity to Bradyrhizobium japonicum signal peptidase SipS SWALL:Q45225 (EMBL:U33883) (259 aa) fasta scores: E(): 0.00072, 29.68% id in 128 aa, and similar to Bacteroides thetaiotaomicron signal peptidase I BT3318 SWALL:AAO78424 (EMBL:AE016940) (312 aa) fasta scores: E(): 1.6e-94, 74.43% id in 309 aa, and to Bacteroides thetaiotaomicron signal peptidase I BT3319 SWALL:AAO78425 (EMBL:AE016940) (493 aa) fasta scores: E(): 1.1e-11, 25.64% id in 429 aa, and to Rhizobium loti signal peptidase i mlr7763 SWALL:Q985A7 (EMBL:AP003012) (249 aa) fasta scores: E(): 3.8e-07, 26.72% id in 232 aa; putative exported signal peptidase I 152021 3288247 BF9343_0144 Bacteroides fragilis NCTC 9343 putative exported signal peptidase I YP_209885.1 151086 R 272559 CDS YP_209886.1 60679742 3288249 complement(152029..153513) 1 NC_003228.3 Similar to 80 amino acids at the C-terminus of Escherichia coli O6 signal peptidase I LepB or C3092 SWALL:Q8FF16 (EMBL:AE016764) (324 aa) fasta scores: E(): 2.2e-06, 44.3% id in 79 aa, and to entire protein of Bacteroides thetaiotaomicron signal peptidase I BT3319 SWALL:AAO78425 (EMBL:AE016940) (493 aa) fasta scores: E(): 3.1e-175, 85.83% id in 494 aa, and to Chlorobium tepidum signal peptidase I LepB or CT1450 SWALL:Q8KCH1 (EMBL:AE012902) (280 aa) fasta scores: E(): 8.2e-15, 27.72% id in 440 aa; possible signal peptidase 153513 3288249 BF9343_0145 Bacteroides fragilis NCTC 9343 possible signal peptidase YP_209886.1 152029 R 272559 CDS YP_209887.1 60679743 3286273 complement(153518..154246) 1 NC_003228.3 Similar to Pseudomonas syringae dihydrodipicolinate reductase DapB SWALL:DAPB_PSESZ (SWALL:Q52419) (267 aa) fasta scores: E(): 5.8e-13, 30.71% id in 267 aa, and to Bacteroides thetaiotaomicron dihydrodipicolinate reductase BT3320 SWALL:AAO78426 (EMBL:AE016940) (254 aa) fasta scores: E(): 1.9e-56, 83.07% id in 254 aa, and to Chlorobium tepidum dihydrodipicolinate reductase DapB or CT1850 SWALL:Q8KBD8 (EMBL:AE012936) (249 aa) fasta scores: E(): 1.1e-28, 40.63% id in 251 aa; putative dihydrodipicolinate reductase 154246 3286273 BF9343_0146 Bacteroides fragilis NCTC 9343 putative dihydrodipicolinate reductase YP_209887.1 153518 R 272559 CDS YP_209888.1 60679744 3286288 154342..155610 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3321 SWALL:AAO78427 (EMBL:AE016940) (427 aa) fasta scores: E(): 1.4e-133, 69.55% id in 427 aa; hypothetical protein 155610 3286288 BF9343_0147 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209888.1 154342 D 272559 CDS YP_209889.1 60679745 3288250 155702..156262 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3323 SWALL:AAO78429 (EMBL:AE016940) (173 aa) fasta scores: E(): 2.3e-51, 74.85% id in 175 aa; hypothetical protein 156262 3288250 BF9343_0148 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209889.1 155702 D 272559 CDS YP_209890.1 60679746 3288252 complement(156456..157388) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative NifR3 family tim-barrel enzyme with dihydrouridine synthase domain BT3326 SWALL:AAO78432 (EMBL:AE016940) (314 aa) fasta scores: E(): 1.3e-83, 64.72% id in 309 aa, and to Clostridium perfringens probable transcriptional regulator CPE1275 SWALL:Q8XKW7 (EMBL:AP003189) (321 aa) fasta scores: E(): 2.3e-34, 33.97% id in 312 aa, and to Clostridium acetobutylicum predicted tim-barrel enzyme, NifR3 family CAC3454 SWALL:Q97DM0 (EMBL:AE007843) (311 aa) fasta scores: E(): 2.6e-31, 33.12% id in 314 aa; hypothetical protein 157388 3288252 BF9343_0149 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209890.1 156456 R 272559 CDS YP_209891.1 60679747 3288251 complement(157395..158615) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3325 SWALL:AAO78431 (EMBL:AE016940) (409 aa) fasta scores: E(): 4.5e-72, 76.29% id in 405 aa; conserved hypothetical outer membrane protein 158615 3288251 BF9343_0150 Bacteroides fragilis NCTC 9343 conserved hypothetical outer membrane protein YP_209891.1 157395 R 272559 CDS YP_209892.1 60679748 3288253 158846..159487 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3335 SWALL:AAO78441 (EMBL:AE016940) (213 aa) fasta scores: E(): 9.1e-74, 76.99% id in 213 aa; hypothetical protein 159487 3288253 BF9343_0151 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209892.1 158846 D 272559 CDS YP_209893.1 60679749 3286263 complement(159589..160359) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase LpxA or B0181 or C0218 or SF0171 SWALL:LPXA_ECOLI (SWALL:P10440) (262 aa) fasta scores: E(): 1.3e-29, 36.18% id in 257 aa, and to Bacteroides thetaiotaomicron UDP-N-acetylglucosamine acetyltransferase BT3336 SWALL:AAO78442 (EMBL:AE016940) (256 aa) fasta scores: E(): 1.4e-85, 83.98% id in 256 aa, and to Bacteroides thetaiotaomicron acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase BT4205 SWALL:AAO79310 (EMBL:AE016944) (255 aa) fasta scores: E(): 1.4e-46, 47.65% id in 256 aa; putative acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 160359 3286263 BF9343_0152 Bacteroides fragilis NCTC 9343 putative acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_209893.1 159589 R 272559 CDS YP_209894.1 60679750 3286387 complement(160379..161770) 1 NC_003228.3 Similar to Escherichia coli probable outer membrane lipoprotein CusC precursor or IbeB or B0572 SWALL:CUSC_ECOLI (SWALL:P77211) (457 aa) fasta scores: E(): 3.7e-32, 29.5% id in 461 aa, and to Bacteroides thetaiotaomicron outer membrane protein OprM precursor, multidrug resistance protein BT3337 SWALL:AAO78443 (EMBL:AE016940) (461 aa) fasta scores: E(): 1.6e-127, 77.75% id in 463 aa, and to Bacteroides thetaiotaomicron multidrug efflux pump channel protein BT1965 SWALL:AAO77072 (EMBL:AE016934) (456 aa) fasta scores: E(): 4.2e-88, 56.37% id in 463 aa; putative outer membrane lipoprotein 161770 3286387 BF9343_0153 Bacteroides fragilis NCTC 9343 putative outer membrane lipoprotein YP_209894.1 160379 R 272559 CDS YP_209895.1 60679751 3288254 complement(161787..164990) 1 NC_003228.3 Similar to Pseudomonas aeruginosa RND transporter MexF protein SWALL:P95422 (EMBL:X99514) (1062 aa) fasta scores: E(): 1e-143, 39.77% id in 1056 aa, and to Bacteroides thetaiotaomicron AcrB/AcrD family multidrug resistance protein BT3338 SWALL:AAO78444 (EMBL:AE016940) (1071 aa) fasta scores: E(): 0, 75.91% id in 1071 aa, and to Bacteroides thetaiotaomicron multidrug resistance protein, AcrB/AcrD family BT1966 SWALL:AAO77073 (EMBL:AE016934) (1065 aa) fasta scores: E(): 1.5e-204, 55.81% id in 1066 aa; putative AcrB/AcrD family RND transport protein 164990 3288254 BF9343_0154 Bacteroides fragilis NCTC 9343 putative AcrB/AcrD family RND transport protein YP_209895.1 161787 R 272559 CDS YP_209896.1 60679752 3288256 complement(165015..166169) 1 NC_003228.3 Similar to Enterobacter aerogenes EefA lipoprotein precursor SWALL:Q8GC84 (EMBL:AJ508047) (374 aa) fasta scores: E(): 5.2e-27, 33.69% id in 368 aa, and to Bacteroides thetaiotaomicron AcrA/AcrE family multidrug resistance protein BT3339 SWALL:AAO78445 (EMBL:AE016940) (391 aa) fasta scores: E(): 3.7e-84, 61.09% id in 383 aa, and to Bacteroides thetaiotaomicron multidrug efflux protein BT1967 SWALL:AAO77074 (EMBL:AE016934) (380 aa) fasta scores: E(): 2e-60, 49.18% id in 370 aa; putative AcrA/AcrE RND transport or HlyD secretion family protein 166169 3288256 BF9343_0155 Bacteroides fragilis NCTC 9343 putative AcrA/AcrE RND transport or HlyD secretion family protein YP_209896.1 165015 R 272559 CDS YP_209897.1 60679753 3288255 complement(166478..169582) 1 NC_003228.3 Similar to Thermotoga maritima beta-galactosidase LacZ or TM1193 SWALL:BGAL_THEMA (SWALL:Q56307) (1084 aa) fasta scores: E(): 3.6e-111, 39.86% id in 1016 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT3340 SWALL:AAO78446 (EMBL:AE016940) (1036 aa) fasta scores: E(): 0, 79.32% id in 1035 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT3293 SWALL:AAO78399 (EMBL:AE016939) (1421 aa) fasta scores: E(): 5.4e-119, 36.74% id in 1064 aa; putative exported beta-galactosidase 169582 3288255 BF9343_0156 Bacteroides fragilis NCTC 9343 putative exported beta-galactosidase YP_209897.1 166478 R 272559 CDS YP_209898.1 60679754 3288257 169688..171607 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3341 SWALL:AAO78447 (EMBL:AE016940) (642 aa) fasta scores: E(): 1.1e-137, 73.2% id in 642 aa, and to Chlorobium tepidum hypothetical protein CT2013 SWALL:Q8KAY5 (EMBL:AE012951) (584 aa) fasta scores: E(): 8.5e-10, 26.41% id in 212 aa; hypothetical protein 171607 3288257 BF9343_0157 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209898.1 169688 D 272559 CDS YP_209899.1 60679755 3286313 171717..172424 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3342 SWALL:AAO78448 (EMBL:AE016940) (259 aa) fasta scores: E(): 5.6e-77, 76.82% id in 233 aa; hypothetical protein 172424 3286313 BF9343_0158 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209899.1 171717 D 272559 CDS YP_209900.1 60679756 3286256 complement(172414..172818) 1 NC_003228.3 Similar to Escherichia coli phenylacetic acid degradation protein PaaI or B1396 SWALL:PAAI_ECOLI (SWALL:P76084) (140 aa) fasta scores: E(): 4.9e-12, 35.77% id in 123 aa, and to Bacteroides thetaiotaomicron putative phenylacetic acid degradation protein BT3343 SWALL:AAO78449 (EMBL:AE016940) (134 aa) fasta scores: E(): 3.5e-42, 87.31% id in 134 aa, and to Methanosarcina acetivorans phenylacetic acid degradation protein PaaI or ma0735 SWALL:Q8TSR0 (EMBL:AE010734) (146 aa) fasta scores: E(): 2.1e-19, 50% id in 130 aa; putative phenylacetic acid degradation protein 172818 3286256 BF9343_0159 Bacteroides fragilis NCTC 9343 putative phenylacetic acid degradation protein YP_209900.1 172414 R 272559 CDS YP_209901.1 60679757 3285329 complement(172929..174404) 1 NC_003228.3 Similar to Deinococcus radiodurans cysteinyl-tRNA synthetase CysS or dr1670 SWALL:SYC_DEIRA (SWALL:Q9RTT6) (498 aa) fasta scores: E(): 9.3e-82, 49.49% id in 495 aa, and to Bacteroides thetaiotaomicron cysteinyl-tRNA synthetase BT3351 SWALL:AAO78457 (EMBL:AE016940) (493 aa) fasta scores: E(): 2e-185, 90.06% id in 493 aa, and to Chlorobium tepidum cysteinyl-tRNA synthetase CysS or CT2158 SWALL:Q8KAK2 (EMBL:AE012964) (487 aa) fasta scores: E(): 6.3e-86, 48.79% id in 496 aa; putative cysteinyl-tRNA synthetase 174404 cysS 3285329 cysS Bacteroides fragilis NCTC 9343 putative cysteinyl-tRNA synthetase YP_209901.1 172929 R 272559 CDS YP_209902.1 60679758 3288258 complement(174959..175795) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron haloacid dehalogenase-like hydrolase BT3352 SWALL:AAO78458 (EMBL:AE016940) (270 aa) fasta scores: E(): 9.3e-70, 70.41% id in 267 aa, and to Bacteroides thetaiotaomicron putative hydrolase, haloacid dehalogenase-like hydrolase BT4699 SWALL:AAO79804 (EMBL:AE016946) (410 aa) fasta scores: E(): 1.2e-42, 48.12% id in 266 aa, and to Vibrio cholerae hypothetical protein Vc1364 vc1364 SWALL:Q9KS95 (EMBL:AE004216) (273 aa) fasta scores: E(): 3.6e-27, 35.33% id in 266 aa; putative haloacid dehalogenase-like hydrolase 175795 3288258 BF9343_0161 Bacteroides fragilis NCTC 9343 putative haloacid dehalogenase-like hydrolase YP_209902.1 174959 R 272559 CDS YP_209903.1 60679759 3288259 complement(175859..176536) 1 NC_003228.3 Similar to Bacteroides fragilis transcriptional regulatory protein RprY SWALL:Q9AE24 (EMBL:S59000) (236 aa) fasta scores: E(): 1.6e-13, 30.73% id in 231 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT2165 SWALL:AAO77272 (EMBL:AE016935) (233 aa) fasta scores: E(): 1.4e-13, 30.73% id in 231 aa, and to Anabaena sp. two-component system response regulator ALL1964 SWALL:Q8YVL1 (EMBL:AP003587) (236 aa) fasta scores: E(): 2.4e-13, 31.03% id in 232 aa; putative two-component system, response regulator protein 176536 3288259 BF9343_0162 Bacteroides fragilis NCTC 9343 putative two-component system, response regulator protein YP_209903.1 175859 R 272559 CDS YP_209904.1 60679760 3286309 complement(176546..177898) 1 NC_003228.3 Similar to Bacteroides fragilis sensor regulator protein RprX SWALL:Q08408 (EMBL:S59000) (519 aa) fasta scores: E(): 3.8e-14, 24.13% id in 290 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT0733 SWALL:AAO75840 (EMBL:AE016929) (459 aa) fasta scores: E(): 6.4e-17, 27.54% id in 374 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT2166 SWALL:AAO77273 (EMBL:AE016935) (515 aa) fasta scores: E(): 9.3e-17, 24.62% id in 333 aa; putative two-component regulatory system, sensor kinase protein 177898 3286309 BF9343_0163 Bacteroides fragilis NCTC 9343 putative two-component regulatory system, sensor kinase protein YP_209904.1 176546 R 272559 CDS YP_209905.1 60679761 3288260 178047..178241 1 NC_003228.3 no significant database matches; hypothetical protein 178241 3288260 BF9343_0164 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209905.1 178047 D 272559 CDS YP_209906.1 60679762 3288262 178449..179729 1 NC_003228.3 Low similarity to Homo sapiens kelch-like protein 2 klhl2 SWALL:KHL2_HUMAN (SWALL:O95198) (593 aa) fasta scores: E(): 1.6e-06, 24.4% id in 254 aa; hypothetical Kelch-like protein 179729 3288262 BF9343_0165 Bacteroides fragilis NCTC 9343 hypothetical Kelch-like protein YP_209906.1 178449 D 272559 CDS YP_209907.1 60679763 3288261 180086..180772 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 transcriptional regulatory protein CusR or B0571 or C0657 or Z0709 or ECS0609 SWALL:CUSR_ECOLI (SWALL:P77380) (227 aa) fasta scores: E(): 1.5e-32, 42.98% id in 221 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT0990 SWALL:AAO76097 (EMBL:AE016930) (228 aa) fasta scores: E(): 1.5e-65, 77.63% id in 228 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT0682 SWALL:AAO75789 (EMBL:AE016928) (245 aa) fasta scores: E(): 7e-36, 47.11% id in 225 aa; putative two-component response regulator transcriptional regulatory protein 180772 3288261 BF9343_0166 Bacteroides fragilis NCTC 9343 putative two-component response regulator transcriptional regulatory protein YP_209907.1 180086 D 272559 CDS YP_209908.1 60679764 3286329 180769..182136 1 NC_003228.3 Similar to Escherichia coli sensor kinase CusS or b0570 SWALL:CUSS_ECOLI (SWALL:P77485) (480 aa) fasta scores: E(): 2.5e-19, 28.09% id in 331 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT0989 SWALL:AAO76096 (EMBL:AE016930) (455 aa) fasta scores: E(): 5e-119, 69.67% id in 455 aa, and to Fusobacterium nucleatum two-component sensor kinase CzcS FN0586 SWALL:Q8R693 (EMBL:AE010570) (445 aa) fasta scores: E(): 8.5e-23, 28.86% id in 291 aa; putative two-component regulator sensor kinase 182136 3286329 BF9343_0167 Bacteroides fragilis NCTC 9343 putative two-component regulator sensor kinase YP_209908.1 180769 D 272559 CDS YP_209909.1 60679765 3289248 182296..184947 1 NC_003228.3 Similar to Salmonella typhimurium Mg2+ transporter MgtA or STM4456 SWALL:ATMA_SALTY (SWALL:P36640) (902 aa) fasta scores: E(): 1.6e-170, 52.17% id in 874 aa, and to Bacteroides thetaiotaomicron Mg2+ transport ATPase protein B BT0988 SWALL:AAO76095 (EMBL:AE016930) (883 aa) fasta scores: E(): 0, 78.95% id in 884 aa, and to Escherichia coli, and Escherichia coli O157:H7 Mg2+ transporter MgtA or Mgt or CorB or B4242 or Z5853 or ECS5219 SWALL:ATMA_ECOLI (SWALL:P39168) (898 aa) fasta scores: E(): 1.6e-171, 52.34% id in 873 aa; putative Mg2+ transport ATPase protein 184947 mgtA 3289248 mgtA Bacteroides fragilis NCTC 9343 putative Mg2+ transport ATPase protein YP_209909.1 182296 D 272559 CDS YP_209910.1 60679766 3288263 185012..186097 1 NC_003228.3 no significant database matches; hypothetical protein 186097 3288263 BF9343_0169 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209910.1 185012 D 272559 CDS YP_209911.1 60679767 3286294 186318..187115 1 NC_003228.3 no significant database matches; putative lipoprotein 187115 3286294 BF9343_0170 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_209911.1 186318 D 272559 CDS YP_209912.1 60679768 3288264 complement(187162..190212) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron Snf2 family helicase BT3353 SWALL:AAO78459 (EMBL:AE016940) (1027 aa) fasta scores: E(): 4.1e-129, 61.8% id in 1029 aa, and to Chlamydia muridarum helicase, Snf2 family tc0081 SWALL:Q9PLL8 (EMBL:AE002276) (1181 aa) fasta scores: E(): 2.5e-50, 28.45% id in 970 aa, and to Chlamydia trachomatis Swf/Snf family helicase CT708 SWALL:O84714 (EMBL:AE001341) (1163 aa) fasta scores: E(): 3.2e-50, 28.35% id in 970 aa; putative SNF family helicase 190212 3288264 BF9343_0171 Bacteroides fragilis NCTC 9343 putative SNF family helicase YP_209912.1 187162 R 272559 CDS YP_209913.1 60679769 3288265 190264..191358 1 NC_003228.3 Similar to Escherichia coli tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase tRmu or AsuE or MnmA or B1133 SWALL:TRMU_ECOLI (SWALL:P25745) (368 aa) fasta scores: E(): 1.4e-29, 33.69% id in 374 aa, and to Bacteroides thetaiotaomicron tRNA BT3354 SWALL:Q8A2F1 (EMBL:AE016940) (370 aa) fasta scores: E(): 1.2e-63, 74.18% id in 368 aa, and to Bacteroides thetaiotaomicron putative tRNA BT3888 SWALL:Q8A0Y3 (EMBL:AE016942) (351 aa) fasta scores: E(): 1.8e-50, 42.07% id in 347 aa; putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 191358 3288265 BF9343_0172 Bacteroides fragilis NCTC 9343 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_209913.1 190264 D 272559 CDS YP_209914.1 60679770 3288266 complement(191418..192929) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative auxin-regulated protein BT3355 SWALL:AAO78461 (EMBL:AE016940) (503 aa) fasta scores: E(): 4.3e-190, 91.01% id in 501 aa, and to Arabidopsis thaliana nt-gh3 deduced protein, putative f11i4_14 SWALL:Q9C736 (EMBL:AC073555) (525 aa) fasta scores: E(): 3.3e-10, 24.33% id in 522 aa, and to Clostridium acetobutylicum homolog of plant auxin-responsive gh3-like protein CAC3411 SWALL:Q97DR1 (EMBL:AE007838) (563 aa) fasta scores: E(): 7.3e-10, 23.92% id in 560 aa; putative plant auxin-regulated protein 192929 3288266 BF9343_0173 Bacteroides fragilis NCTC 9343 putative plant auxin-regulated protein YP_209914.1 191418 R 272559 CDS YP_209915.1 60679771 3289176 193099..194109 1 NC_003228.3 Similar to Bacillus stearothermophilus 6-phosphofructokinase PfkA or Pfk SWALL:K6PF_BACST (SWALL:P00512) (319 aa) fasta scores: E(): 5.9e-41, 41.72% id in 302 aa, and to Bacteroides thetaiotaomicron 6-phosphofructokinase BT3356 SWALL:AAO78462 (EMBL:AE016940) (336 aa) fasta scores: E(): 2e-118, 93.15% id in 336 aa, and to Clostridium perfringens 6-phosphofructokinase PfkA or Pfk or CPE0361 SWALL:K6PF_CLOPE (SWALL:Q8XNH2) (319 aa) fasta scores: E(): 3e-41, 43.04% id in 309 aa; putative 6-phosphofructokinase 2 194109 pfkA2 3289176 pfkA2 Bacteroides fragilis NCTC 9343 putative 6-phosphofructokinase 2 YP_209915.1 193099 D 272559 CDS YP_209916.1 60679772 3286322 complement(194128..195000) 1 NC_003228.3 Similar to Staphylococcus epidermidis RNAse III se0908 SWALL:Q8CPI1 (EMBL:AE016747) (245 aa) fasta scores: E(): 8.7e-17, 34.34% id in 230 aa, and to Bacteroides thetaiotaomicron ribonuclease III BT3357 SWALL:AAO78463 (EMBL:AE016940) (324 aa) fasta scores: E(): 4e-84, 80.76% id in 286 aa, and to Chlorobium tepidum ribonuclease III Rnc or CT2119 SWALL:RNC_CHLTE (SWALL:Q8KAN7) (272 aa) fasta scores: E(): 7.4e-20, 33.98% id in 256 aa; putative ribonuclease III 195000 3286322 BF9343_0175 Bacteroides fragilis NCTC 9343 putative ribonuclease III YP_209916.1 194128 R 272559 CDS YP_209917.1 60679773 3288268 complement(195005..196267) 1 NC_003228.3 Similar to Synechocystis sp. 3-oxoacyl-[acyl-carrier-protein] synthase II FabF or sll1069 SWALL:FABF_SYNY3 (SWALL:P73283) (416 aa) fasta scores: E(): 1.7e-76, 49.88% id in 419 aa, and to Bacteroides thetaiotaomicron 3-oxoacyl-[acyl-carrier-protein] synthase II BT3358 SWALL:AAO78464 (EMBL:AE016940) (420 aa) fasta scores: E(): 3.5e-148, 93.33% id in 420 aa, and to Chlorobium tepidum 3-oxoacyl- FabF or CT2118 SWALL:Q8KAN8 (EMBL:AE012960) (413 aa) fasta scores: E(): 1.7e-86, 58.27% id in 417 aa; putative 3-oxoacyl-[acyl-carrier-protein] synthase II 196267 3288268 BF9343_0176 Bacteroides fragilis NCTC 9343 putative 3-oxoacyl-[acyl-carrier-protein] synthase II YP_209917.1 195005 R 272559 CDS YP_209918.1 60679774 3289099 complement(196283..196519) 1 NC_003228.3 Similar to Azospirillum brasilense acyl carrier protein AcpP or AcpF SWALL:ACP_AZOBR (SWALL:P94123) (78 aa) fasta scores: E(): 2.4e-15, 68.42% id in 76 aa, and to Bacteroides thetaiotaomicron acyl carrier protein BT3359 SWALL:AAO78465 (EMBL:AE016940) (78 aa) fasta scores: E(): 5.1e-23, 94.87% id in 78 aa, and to Leucothrix mucor acyl carrier protein AcpP SWALL:ACP_LEUMU (SWALL:P80920) (76 aa) fasta scores: E(): 8.7e-14, 61.33% id in 75 aa; putative acyl carrier protein 196519 acpP 3289099 acpP Bacteroides fragilis NCTC 9343 putative acyl carrier protein YP_209918.1 196283 R 272559 CDS YP_209919.1 60679775 3289329 196618..197241 1 NC_003228.3 Similar to Bacillus subtilis phosphoribosylglycinamide formyltransferase PurN SWALL:PUR3_BACSU (SWALL:P12040) (195 aa) fasta scores: E(): 3.5e-20, 40% id in 190 aa, and to Bacteroides thetaiotaomicron phosphoribosylglycinamide formyltransferase BT3360 SWALL:Q8A2E5 (EMBL:AE016940) (208 aa) fasta scores: E(): 1.2e-59, 74.63% id in 205 aa, and to Chlorobium tepidum phosphoribosylglycinamide formyltransferase PurN or CT0319 SWALL:Q8KFK7 (EMBL:AE012810) (199 aa) fasta scores: E(): 7.8e-28, 41.88% id in 191 aa. Possible alternative start site at codon 18.; putative phosphoribosylglycinamide formyltransferase 197241 purN 3289329 purN Bacteroides fragilis NCTC 9343 putative phosphoribosylglycinamide formyltransferase YP_209919.1 196618 D 272559 CDS YP_209920.1 60679776 3289141 complement(197279..198325) 1 NC_003228.3 Similar to Escherichia coli erythronate-4-phosphate dehydrogenase PdxB or B2320 SWALL:PDXB_ECOLI (SWALL:P05459) (378 aa) fasta scores: E(): 2.3e-47, 41.29% id in 356 aa, and to Bacteroides thetaiotaomicron erythronate-4-phosphate dehydrogenase BT3361 SWALL:AAO78467 (EMBL:AE016940) (348 aa) fasta scores: E(): 2.4e-97, 71.83% id in 348 aa, and to Shigella flexneri erythronate-4-phosphate dehyrogenase PdxB or SF2396 SWALL:AAN43909 (EMBL:AE015255) (378 aa) fasta scores: E(): 1.7e-48, 41.85% id in 356 aa; putative erythronate-4-phosphate dehydrogenase 198325 pdxB 3289141 pdxB Bacteroides fragilis NCTC 9343 putative erythronate-4-phosphate dehydrogenase YP_209920.1 197279 R 272559 CDS YP_209921.1 60679777 3288267 198458..199174 1 NC_003228.3 Very low similarity to Methanosarcina mazei glycosyltransferase MM2109 SWALL:Q8PV65 (EMBL:AE013452) (297 aa) fasta scores: E(): 2, 27.15% id in 151 aa. Extremely low similarity to other glycosyltransferases; hypothetical protein 199174 3288267 BF9343_0180 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209921.1 198458 D 272559 CDS YP_209922.1 60679778 3286286 199179..199892 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3364 SWALL:AAO78470 (EMBL:AE016940) (247 aa) fasta scores: E(): 1.5e-31, 42.15% id in 223 aa; hypothetical protein 199892 3286286 BF9343_0181 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209922.1 199179 D 272559 CDS YP_209923.1 60679779 3288270 complement(199861..200796) 1 NC_003228.3 Similar to Escherichia coli lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or B3626 SWALL:RFAJ_ECOLI (SWALL:P27129) (338 aa) fasta scores: E(): 2.2e-20, 28.66% id in 307 aa, and to Bacillus subtilis general stress protein A GspA or Ipa-12D SWALL:GSPA_BACSU (SWALL:P25148) (286 aa) fasta scores: E(): 2.1e-23, 29.03% id in 279 aa, and to Escherichia coli UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase WaaR SWALL:O68204 (EMBL:AF019375) (338 aa) fasta scores: E(): 7.4e-20, 28.33% id in 307 aa, and to Enterococcus faecalis general stress protein A GspA-2 or EF1811 SWALL:AAO81579 (EMBL:AE016952) (281 aa) fasta scores: E(): 1.5e-19, 30.51% id in 272 aa; putative lipopolysaccharide 1,2-glucosyltransferase/general stress protein 200796 3288270 BF9343_0182 Bacteroides fragilis NCTC 9343 putative lipopolysaccharide 1,2-glucosyltransferase/general stress protein YP_209923.1 199861 R 272559 CDS YP_209924.1 60679780 3288269 complement(200824..201846) 1 NC_003228.3 Similar to Bacteroides nodosus lipopolysaccharide biosynthesis LpsA protein SWALL:LPSA_BACNO (SWALL:P39907) (318 aa) fasta scores: E(): 8.2e-34, 35.11% id in 319 aa, and to Bacteroides thetaiotaomicron lipopolysaccharide core biosynthesis protein LpsA BT3363 SWALL:AAO78469 (EMBL:AE016940) (324 aa) fasta scores: E(): 1.1e-65, 57.73% id in 336 aa, and to Vibrio parahaemolyticus putative lipopolysaccharide A protein vp0191 SWALL:BAC58454 (EMBL:AP005073) (311 aa) fasta scores: E(): 2.1e-43, 41.35% id in 324 aa; putative lipopolysaccharide core biosynthesis protein 201846 3288269 BF9343_0183 Bacteroides fragilis NCTC 9343 putative lipopolysaccharide core biosynthesis protein YP_209924.1 200824 R 272559 CDS YP_209925.1 60679781 3286354 complement(201849..202652) 1 NC_003228.3 Similar C-terminus of Campylobacter jejuni putative two-domain glycosyltransferase CJ1135 SWALL:Q9PNF9 (EMBL:AL139077) (515 aa) fasta scores: E(): 1.7e-30, 40.55% id in 254 aa, and to entire protein of Vibrio parahaemolyticus hypothetical protein VP0192 SWALL:BAC58455 (EMBL:AP005073) (262 aa) fasta scores: E(): 2.9e-44, 44.61% id in 269 aa, and to C-terminus of Campylobacter jejuni putative two-domain glycosyltransferase SWALL:Q938Y0 (EMBL:AY044868) (515 aa) fasta scores: E(): 5.4e-29, 38.4% id in 250 aa; putative glycosyltransferase 202652 3286354 BF9343_0184 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_209925.1 201849 R 272559 CDS YP_209926.1 60679782 3288271 complement(202773..203843) 1 NC_003228.3 Similar to Lactobacillus delbrueckii glycosyltransferase EpsJ SWALL:Q9F0B8 (EMBL:AF267127) (327 aa) fasta scores: E(): 9.9e-34, 39.06% id in 256 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase YibD BT3366 SWALL:AAO78472 (EMBL:AE016940) (336 aa) fasta scores: E(): 5.3e-54, 43.21% id in 324 aa, and to Enterococcus faecalis glycosyl transferase, group 2 family protein EF2170 SWALL:AAO81902 (EMBL:AE016953) (324 aa) fasta scores: E(): 3.5e-37, 41.51% id in 277 aa; putative glycosyltransferase 203843 3288271 BF9343_0185 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_209926.1 202773 R 272559 CDS YP_209927.1 60679783 3288272 204264..206099 1 NC_003228.3 Similar to Leptospira interrogans probable transport ATP-binding protein MsbA or la3694 SWALL:Q8F003 (EMBL:AE011524) (626 aa) fasta scores: E(): 1.8e-60, 36.68% id in 627 aa, and to Bacteroides thetaiotaomicron ABC transporter, ATP-binding protein BT3386 SWALL:AAO78492 (EMBL:AE016940) (611 aa) fasta scores: E(): 1.6e-187, 85.31% id in 613 aa, and to Chlorobium tepidum ABC transporter, ATP-binding protein CT0215 SWALL:Q8KFV5 (EMBL:AE012801) (620 aa) fasta scores: E(): 3.8e-68, 41.05% id in 531 aa. High similarity to lipid A transport proteins; putative transport ATP-binding protein 206099 3288272 BF9343_0186 Bacteroides fragilis NCTC 9343 putative transport ATP-binding protein YP_209927.1 204264 D 272559 CDS YP_209928.1 60679784 3286188 206102..207334 1 NC_003228.3 no significant database matches; hypothetical protein 207334 3286188 BF9343_0187 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209928.1 206102 D 272559 CDS YP_209929.1 60679785 3288902 complement(207338..207967) 1 NC_003228.3 Similar to Trypanosoma brucei ribonuclease H1 RnH1 SWALL:O00870 (EMBL:U74470) (301 aa) fasta scores: E(): 0.00053, 34% id in 100 aa, and to Bacteroides thetaiotaomicron ribonuclease H-related protein BT3391 SWALL:AAO78497 (EMBL:AE016940) (211 aa) fasta scores: E(): 8.5e-73, 82.93% id in 211 aa, and to Bacillus halodurans ribonuclease H-related protein BH0863 SWALL:Q9KEI9 (EMBL:AP001510) (196 aa) fasta scores: E(): 3.1e-24, 49.52% id in 210 aa; putative ribonuclease H1 207967 rnh1 3288902 rnh1 Bacteroides fragilis NCTC 9343 putative ribonuclease H1 YP_209929.1 207338 R 272559 CDS YP_209930.1 60679786 3288274 208087..208689 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron nitroreductase BT3392 SWALL:AAO78498 (EMBL:AE016940) (200 aa) fasta scores: E(): 5.9e-63, 78% id in 200 aa, and to Clostridium acetobutylicum nitroreductase family protein CAC3314 SWALL:Q97E06 (EMBL:AE007828) (198 aa) fasta scores: E(): 1.5e-47, 61.3% id in 199 aa, and to Listeria innocua hypothetical protein LIN2962 SWALL:Q926S9 (EMBL:AL596174) (199 aa) fasta scores: E(): 5.1e-40, 54% id in 200 aa; hypothetical protein 208689 3288274 BF9343_0189 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209930.1 208087 D 272559 CDS YP_209931.1 60679787 3288273 209525..210064 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron shikimate kinase BT3393 SWALL:Q8A2B2 (EMBL:AE016940) (175 aa) fasta scores: E(): 1.2e-52, 81.14% id in 175 aa, and to Bacillus anthracis str. Ames shikimate kinase AroK or ba4457 SWALL:AAP28170 (EMBL:AE017037) (165 aa) fasta scores: E(): 4.2e-16, 43.91% id in 148 aa, and to Anabaena sp. shikimate kinase Alr1244 SWALL:Q8YXG9 (EMBL:AP003585) (181 aa) fasta scores: E(): 2.1e-15, 37.72% id in 167 aa; putative shikimate kinase 210064 3288273 BF9343_0190 Bacteroides fragilis NCTC 9343 putative shikimate kinase YP_209931.1 209525 D 272559 CDS YP_209932.1 60679788 3288275 210211..212709 1 NC_003228.3 Similar to C-terminus of Encephalitozoon cuniculi hypothetical protein Ecu11_0430 ecu11_0430 SWALL:Q8SU70 (EMBL:AL590450) (590 aa) fasta scores: E(): 1.7e-30, 29.14% id in 470 aa, and to C-terminus of Escherichia coli O6 hypothetical protein c1269 SWALL:Q8FIV2 (EMBL:AE016759) (378 aa) fasta scores: E(): 4.2e-27, 30.8% id in 383 aa, and to C-terminus of Coxiella burnetii immunoreactive protein SWALL:Q9RN76 (EMBL:AF185288) (469 aa) fasta scores: E(): 6.9e-22, 29.04% id in 451 aa; hypothetical protein 212709 3288275 BF9343_0191 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209932.1 210211 D 272559 CDS YP_209933.1 60679789 3286270 212717..214483 1 NC_003228.3 Similar to Leptospira interrogans heat shock protein HtpG HtpG1 or La1231 SWALL:Q8F6S0 (EMBL:AE011304) (603 aa) fasta scores: E(): 2e-63, 36.54% id in 602 aa, and to Listeria monocytogenes hypothetical protein LMO0942 SWALL:Q8Y8G2 (EMBL:AL591977) (601 aa) fasta scores: E(): 9.4e-47, 32.82% id in 594 aa, and to Listeria innocua hypothetical protein Lin0941 SWALL:Q92D78 (EMBL:AL596167) (564 aa) fasta scores: E(): 2e-42, 34.05% id in 552 aa; putative heat-shock protein 214483 3286270 BF9343_0192 Bacteroides fragilis NCTC 9343 putative heat-shock protein YP_209933.1 212717 D 272559 CDS YP_209934.1 60679790 3288276 214492..215571 1 NC_003228.3 Similar to Leptospira interrogans conserved hypothetical protein La1230 SWALL:Q8F6S1 (EMBL:AE011304) (371 aa) fasta scores: E(): 3.1e-19, 27.64% id in 340 aa, and to Listeria innocua hypothetical protein Lin0939 SWALL:Q92D79 (EMBL:AL596167) (320 aa) fasta scores: E(): 3.4e-15, 28.12% id in 352 aa, and to Listeria monocytogenes hypothetical protein LMO0940 SWALL:Q8Y8G4 (EMBL:AL591977) (320 aa) fasta scores: E(): 3.9e-15, 31.66% id in 240 aa; hypothetical protein 215571 3288276 BF9343_0193 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209934.1 214492 D 272559 CDS YP_209935.1 60679791 3286275 215629..217521 1 NC_003228.3 Similar to Escherichia coli biosynthetic arginine decarboxylase SpeA or B2938 SWALL:SPEA_ECOLI (SWALL:P21170) (658 aa) fasta scores: E(): 1.7e-101, 45.15% id in 629 aa, and to Bacteroides thetaiotaomicron putative arginine decarboxylase BT3394 SWALL:AAO78500 (EMBL:AE016940) (630 aa) fasta scores: E(): 0, 95.39% id in 630 aa, and to Synechococcus elongatus arginine decarboxylase tll1807 SWALL:Q8DHY6 (EMBL:AP005375) (637 aa) fasta scores: E(): 3.1e-114, 46.09% id in 627 aa; putative arginine decarboxylase 217521 3286275 BF9343_0194 Bacteroides fragilis NCTC 9343 putative arginine decarboxylase YP_209935.1 215629 D 272559 CDS YP_209936.1 60679792 3288278 217649..218434 1 NC_003228.3 Similar to Campylobacter jejuni acetylglutamate kinase ArgB or CJ0226 SWALL:ARGB_CAMJE (SWALL:Q9PIR8) (281 aa) fasta scores: E(): 2.5e-20, 34.78% id in 253 aa, and to Bacteroides thetaiotaomicron putative acetylglutamate kinase BT3395 SWALL:AAO78501 (EMBL:AE016940) (257 aa) fasta scores: E(): 1.5e-82, 91.05% id in 257 aa, and to Methanopyrus kandleri acetylglutamate kinase ArgB or mk1631 SWALL:ARGB_METKA (SWALL:Q8TUX2) (246 aa) fasta scores: E(): 3.7e-28, 40.23% id in 256 aa; putative acetylglutamate kinase 218434 3288278 BF9343_0195 Bacteroides fragilis NCTC 9343 putative acetylglutamate kinase YP_209936.1 217649 D 272559 CDS YP_209937.1 60679793 3288277 218496..219005 1 NC_003228.3 Similar to Mycobacterium smegmatis extracytoplasmic function alternative sigma factor SigE SWALL:O05767 (EMBL:U87307) (204 aa) fasta scores: E(): 3.8e-06, 29.33% id in 150 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3396 SWALL:AAO78502 (EMBL:AE016940) (169 aa) fasta scores: E(): 9.5e-50, 86.98% id in 169 aa, and to Bacteroides thetaiotaomicron putative RNA polymerase ECF-type sigma factor BT0326 SWALL:AAO75433 (EMBL:AE016927) (173 aa) fasta scores: E(): 1.6e-12, 33.12% id in 163 aa; putative extracytoplasmic function alternative sigma factor 219005 3288277 BF9343_0196 Bacteroides fragilis NCTC 9343 putative extracytoplasmic function alternative sigma factor YP_209937.1 218496 D 272559 CDS YP_209938.1 60679794 3286238 218995..219504 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3397 SWALL:AAO78503 (EMBL:AE016940) (158 aa) fasta scores: E(): 2e-34, 63.52% id in 170 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0325 SWALL:AAO75432 (EMBL:AE016927) (153 aa) fasta scores: E(): 0.00066, 30.76% id in 143 aa; hypothetical protein 219504 3286238 BF9343_0197 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209938.1 218995 D 272559 CDS YP_209939.1 60679795 3288279 219509..219985 1 NC_003228.3 no significant database matches; hypothetical protein 219985 3288279 BF9343_0198 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209939.1 219509 D 272559 CDS YP_209940.1 60679796 3288280 complement(220173..220952) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3398 SWALL:AAO78504 (EMBL:AE016940) (261 aa) fasta scores: E(): 4.8e-40, 48.65% id in 261 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1007 SWALL:AAO76114 (EMBL:AE016930) (263 aa) fasta scores: E(): 3e-26, 36.29% id in 259 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1534 SWALL:AAO76641 (EMBL:AE016932) (208 aa) fasta scores: E(): 1.1e-09, 27.77% id in 216 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:Q8GI04 (EMBL:AB088420) (246 aa) fasta scores: E(): 1.1e-06, 27.85% id in 219 aa; putative lipoprotein 220952 3288280 BF9343_0199 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_209940.1 220173 R 272559 CDS YP_209941.1 60679797 3288281 complement(220972..221706) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3398 SWALL:AAO78504 (EMBL:AE016940) (261 aa) fasta scores: E(): 2.6e-12, 29.88% id in 251 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1534 SWALL:AAO76641 (EMBL:AE016932) (208 aa) fasta scores: E(): 1.5e-11, 31.18% id in 186 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1007 SWALL:AAO76114 (EMBL:AE016930) (263 aa) fasta scores: E(): 7.6e-10, 33.07% id in 254 aa, and to Anabaena sp. ORFr4 ALL1511 SWALL:P70759 (EMBL:U72238) (125 aa) fasta scores: E(): 4.6e-08, 35.71% id in 112 aa; putative lipoprotein 221706 3288281 BF9343_0200 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_209941.1 220972 R 272559 CDS YP_209942.1 60679798 3286230 221827..222525 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative zinc protease BT3399 SWALL:Q8A2A6 (EMBL:AE016940) (232 aa) fasta scores: E(): 1.8e-67, 71.98% id in 232 aa, and to Agrobacterium tumefaciens hypothetical protein atu0016 or agr_c_25 SWALL:Q8UJB2 (EMBL:AE008976) (255 aa) fasta scores: E(): 4.4e-12, 27.92% id in 222 aa, and to Chlorobium tepidum zinc protease, putative CT0704 SWALL:Q8KEI5 (EMBL:AE012841) (248 aa) fasta scores: E(): 1.1e-10, 26.9% id in 223 aa; hypothetical protein 222525 3286230 BF9343_0201 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209942.1 221827 D 272559 CDS YP_209943.1 60679799 3285953 complement(222687..223085) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3400 SWALL:AAO78506 (EMBL:AE016940) (131 aa) fasta scores: E(): 7.8e-37, 76.33% id in 131 aa; putative transmembrane protein 223085 3285953 BF9343_0202 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_209943.1 222687 R 272559 CDS YP_209944.1 60679800 3288282 223192..224247 1 NC_003228.3 Similar to Synechocystis sp. regulatory components of sensory transduction system SLR1837 SWALL:P73404 (EMBL:D90906) (234 aa) fasta scores: E(): 0.052, 31.25% id in 80 aa, and to Clostridium tetani transcriptional regulatory component of sensory transduction system CTc01421 SWALL:Q894W3 (EMBL:AE015941) (230 aa) fasta scores: E(): 0.26, 23.93% id in 188 aa, and to Synechococcus elongatus two-component response regulator tll2099 SWALL:Q8DH60 (EMBL:AP005376) (232 aa) fasta scores: E(): 0.55, 26.89% id in 119 aa; putative transmembrane protein 224247 3288282 BF9343_0203 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_209944.1 223192 D 272559 CDS YP_209945.1 60679801 3288284 224408..224635 1 NC_003228.3 no significant database matches; hypothetical protein 224635 3288284 BF9343_0204 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209945.1 224408 D 272559 CDS YP_209946.1 60679802 3288283 224815..225081 1 NC_003228.3 no significant database matches; hypothetical protein 225081 3288283 BF9343_0205 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209946.1 224815 D 272559 CDS YP_209947.1 60679803 3288285 225143..226336 1 NC_003228.3 no significant database matches; hypothetical protein 226336 3288285 BF9343_0206 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209947.1 225143 D 272559 CDS YP_209948.1 60679804 3285884 226356..226883 1 NC_003228.3 no significant database matches; hypothetical protein 226883 3285884 BF9343_0207 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209948.1 226356 D 272559 CDS YP_209949.1 60679805 3286682 227088..228068 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron FucR or BT1272 SWALL:AAO76379 (EMBL:AF137263) (331 aa) fasta scores: E(): 1.3e-85, 68.3% id in 325 aa, and to Bacteroides thetaiotaomicron FucR or BT1272 SWALL:Q9RQ14 (EMBL:AF137263) (331 aa) fasta scores: E(): 1.3e-85, 68.3% id in 325 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT2096 SWALL:AAO77203 (EMBL:AE016934) (325 aa) fasta scores: E(): 4.6e-33, 36.22% id in 323 aa; putative GntR-family regulatory protein 228068 fucR 3286682 fucR Bacteroides fragilis NCTC 9343 putative GntR-family regulatory protein YP_209949.1 227088 D 272559 CDS YP_209950.1 60679806 3286700 228141..229913 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri L-fucose isomerase FucI or B2802 or SF2816 SWALL:FUCI_ECOLI (SWALL:P11552) (591 aa) fasta scores: E(): 4.7e-158, 63% id in 592 aa, and to Bacteroides thetaiotaomicron L-fucose isomerase FucI or BT1273 SWALL:Q9RQ13 (EMBL:AF137263) (591 aa) fasta scores: E(): 0, 90.52% id in 591 aa, and to Bacteroides thetaiotaomicron L-fucose isomerase FucI or BT1273 SWALL:AAO76380 (EMBL:AF137263) (591 aa) fasta scores: E(): 0, 90.52% id in 591 aa; putative L-fucose isomerase 229913 fucI 3286700 fucI Bacteroides fragilis NCTC 9343 putative L-fucose isomerase YP_209950.1 228141 D 272559 CDS YP_209951.1 60679807 3286683 229932..231086 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 lactaldehyde reductase FucO or B2799 or Z4116 or ECS3659 SWALL:FUCO_ECOLI (SWALL:P11549) (383 aa) fasta scores: E(): 1.3e-74, 55.87% id in 383 aa, and to Bacteroides thetaiotaomicron lactaldehyde reductase BT3767 SWALL:AAO78872 (EMBL:AE016942) (384 aa) fasta scores: E(): 2.7e-88, 64.15% id in 385 aa, and to Salmonella typhimurium L-1,2-propanediol oxidoreductase FucO or STM2973 SWALL:Q8ZMC8 (EMBL:AE008836) (382 aa) fasta scores: E(): 4e-77, 56.91% id in 383 aa; putative lactaldehyde reductase 231086 fucO 3286683 fucO Bacteroides fragilis NCTC 9343 putative lactaldehyde reductase YP_209951.1 229932 D 272559 CDS YP_209952.1 60679808 3286684 231083..231721 1 NC_003228.3 Similar to Escherichia coli hypothetical aldolase class II protein YgbL or B2738 SWALL:YGBL_ECOLI (SWALL:Q46890) (212 aa) fasta scores: E(): 3.8e-13, 33.51% id in 182 aa, and to Bacteroides thetaiotaomicron L-fuculose-1-phosphate aldolase FucA or BT1274 SWALL:Q9RQ12 (EMBL:AF137263) (212 aa) fasta scores: E(): 2.1e-79, 91.5% id in 212 aa, and to Bacteroides thetaiotaomicron L-fuculose-1-phosphate aldolase FucA or BT1274 SWALL:AAO76381 (EMBL:AF137263) (212 aa) fasta scores: E(): 2.1e-79, 91.5% id in 212 aa; putative aldolase 231721 fucA 3286684 fucA Bacteroides fragilis NCTC 9343 putative aldolase YP_209952.1 231083 D 272559 CDS YP_209953.1 60679809 3287925 231739..233151 1 NC_003228.3 Similar to Salmonella typhimurium rhamnulokinase RhaB or STM4047 SWALL:RHAB_SALTY (SWALL:P27030) (489 aa) fasta scores: E(): 1e-63, 40.59% id in 468 aa, and to Bacteroides thetaiotaomicron L-fuculose kinase FucK or BT1275 SWALL:Q9RQ11 (EMBL:AF137263) (476 aa) fasta scores: E(): 3.9e-138, 68.87% id in 469 aa, and to Bacteroides thetaiotaomicron L-fuculose kinase FucK or BT1275 SWALL:AAO76382 (EMBL:AF137263) (476 aa) fasta scores: E(): 3.9e-138, 68.87% id in 469 aa; putative fuculokinase 233151 fucK 3287925 fucK Bacteroides fragilis NCTC 9343 putative fuculokinase YP_209953.1 231739 D 272559 CDS YP_209954.1 60679810 3286681 233163..234494 1 NC_003228.3 Similar to Escherichia coli L-fucose permease FucP or B2801 SWALL:FUCP_ECOLI (SWALL:P11551) (438 aa) fasta scores: E(): 1.9e-46, 35.08% id in 419 aa, and to Bacteroides thetaiotaomicron L-fucose permease FucP or BT1277 SWALL:Q9RQ10 (EMBL:AF137263) (438 aa) fasta scores: E(): 5.9e-141, 82.56% id in 436 aa, and to Bacteroides thetaiotaomicron L-fucose permease FucP or BT1277 SWALL:AAO76384 (EMBL:AF137263) (438 aa) fasta scores: E(): 5.9e-141, 82.56% id in 436 aa; putative L-fucose permease 234494 fucP 3286681 fucP Bacteroides fragilis NCTC 9343 putative L-fucose permease YP_209954.1 233163 D 272559 CDS YP_209955.1 60679811 3285885 235211..235678 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3402 SWALL:AAO78508 (EMBL:AE016940) (155 aa) fasta scores: E(): 1.9e-50, 89.03% id in 155 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4746 SWALL:Q9HV53 (EMBL:AE004888) (152 aa) fasta scores: E(): 0.00019, 34.78% id in 92 aa, and to Ralstonia solanacearum hypothetical protein RSC1287 or RS02964 SWALL:Q8XZV8 (EMBL:AL646063) (162 aa) fasta scores: E(): 0.00027, 29.48% id in 156 aa; hypothetical protein 235678 3285885 BF9343_0214 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209955.1 235211 D 272559 CDS YP_209956.1 60679812 3288286 235681..236943 1 NC_003228.3 Similar to Bacillus subtilis N utilization substance protein A homolog NusA SWALL:NUSA_BACSU (SWALL:P32727) (371 aa) fasta scores: E(): 3.6e-37, 35.75% id in 358 aa, and to Bacteroides thetaiotaomicron putative nitrogen utilization substance protein BT3403 SWALL:AAO78509 (EMBL:AE016940) (439 aa) fasta scores: E(): 1.4e-145, 98.32% id in 418 aa, and to Bradyrhizobium japonicum N-utilization substance protein A NusA or BLL0785 SWALL:BAC46050 (EMBL:AP005937) (536 aa) fasta scores: E(): 3.2e-40, 31.46% id in 429 aa; putative N utilization substance protein A 236943 3288286 BF9343_0215 Bacteroides fragilis NCTC 9343 putative N utilization substance protein A YP_209956.1 235681 D 272559 CDS YP_209957.1 60679813 3288288 237064..240111 1 NC_003228.3 Similar to Salmonella typhimurium translation initiation factor IF-2 InfB or STM3286 SWALL:IF2_SALTY (SWALL:Q9ZF31) (892 aa) fasta scores: E(): 7.8e-82, 41.81% id in 916 aa, and to Bacteroides thetaiotaomicron translation initiation factor IF-2 BT3404 SWALL:AAO78510 (EMBL:AE016940) (1040 aa) fasta scores: E(): 1.5e-177, 81.6% id in 1049 aa, and to Chlorobium tepidum translation initiation factor IF-2 InfB or CT0241 SWALL:IF2_CHLTE (SWALL:Q8KFT1) (914 aa) fasta scores: E(): 4.9e-92, 42.74% id in 1020 aa. CDS truncated at the N-terminus relative to the Salmonella IF2; putative translation initiation factor IF-2 240111 3288288 BF9343_0216 Bacteroides fragilis NCTC 9343 putative translation initiation factor IF-2 YP_209957.1 237064 D 272559 CDS YP_209958.1 60679814 3288287 240186..240689 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3405 SWALL:AAO78511 (EMBL:AE016940) (176 aa) fasta scores: E(): 4e-50, 83.13% id in 166 aa; hypothetical protein 240689 3288287 BF9343_0217 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209958.1 240186 D 272559 CDS YP_209959.1 60679815 3288005 240692..242149 1 NC_003228.3 Similar to Escherichia coli predicted ABC transporter SufB protein or B1683 SWALL:SUFB_ECOLI (SWALL:P77522) (495 aa) fasta scores: E(): 2.3e-124, 61.72% id in 499 aa, and to Bacteroides thetaiotaomicron ABC transporter permease BT3406 SWALL:AAO78512 (EMBL:AE016940) (484 aa) fasta scores: E(): 4.8e-194, 98.14% id in 484 aa, and to Rhizobium meliloti hypothetical protein R01735 or SMC00530 SWALL:Q92PK9 (EMBL:AL591788) (489 aa) fasta scores: E(): 1.9e-141, 69.95% id in 486 aa; putative ABC transporter membrane protein 242149 3288005 BF9343_0218 Bacteroides fragilis NCTC 9343 putative ABC transporter membrane protein YP_209959.1 240692 D 272559 CDS YP_209960.1 60679816 3285987 242149..242895 1 NC_003228.3 no significant database matches; hypothetical protein 242895 3285987 BF9343_0219 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209960.1 242149 D 272559 CDS YP_209961.1 60679817 3285979 242919..243671 1 NC_003228.3 Similar to Escherichia coli probable ATP-dependent transporter SufC or B1682 SWALL:SUFC_ECOLI (SWALL:P77499) (248 aa) fasta scores: E(): 1.5e-50, 61.13% id in 247 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT3407 SWALL:Q8A298 (EMBL:AE016940) (250 aa) fasta scores: E(): 1.3e-83, 98.4% id in 250 aa, and to Ceratium horridum putative ATP-dependent transporter YCF16 SWALL:AAO85447 (EMBL:AF490364) (263 aa) fasta scores: E(): 3.4e-57, 68.54% id in 248 aa; putative ABC transporter, ATP-binding protein 243671 3285979 BF9343_0220 Bacteroides fragilis NCTC 9343 putative ABC transporter, ATP-binding protein YP_209961.1 242919 D 272559 CDS YP_209962.1 60679818 3287997 243668..245023 1 NC_003228.3 Similar to Erwinia chrysanthemi ABC transporter SufD protein SWALL:Q9EXP3 (EMBL:AJ301654) (430 aa) fasta scores: E(): 5.3e-25, 29.8% id in 416 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative ABC transporter permease component BT3408 SWALL:AAO78514 (EMBL:AE016940) (447 aa) fasta scores: E(): 2.2e-167, 91.72% id in 447 aa, and to Bradyrhizobium japonicum Blr4341 protein SWALL:BAC49606 (EMBL:AP005950) (434 aa) fasta scores: E(): 3.8e-36, 32.01% id in 431 aa; putative ABC transporter protein 245023 3287997 BF9343_0221 Bacteroides fragilis NCTC 9343 putative ABC transporter protein YP_209962.1 243668 D 272559 CDS YP_209963.1 60679819 3288358 245035..246246 1 NC_003228.3 Similar to Erwinia chrysanthemi cysteine desulfurase SufS SWALL:Q9EXP2 (EMBL:AJ301654) (412 aa) fasta scores: E(): 6.8e-79, 50% id in 402 aa, and to Bacteroides thetaiotaomicron aminotransferase, putative cysteine desulfurase BT3409 SWALL:Q8A296 (EMBL:AE016940) (403 aa) fasta scores: E(): 7.3e-138, 87.59% id in 403 aa, and to Nitrosomonas europaea aminotransferase class-V NE1447 SWALL:CAD85358 (EMBL:BX321861) (422 aa) fasta scores: E(): 7.5e-92, 57.85% id in 401 aa; putative aminotransferase 246246 3288358 BF9343_0222 Bacteroides fragilis NCTC 9343 putative aminotransferase YP_209963.1 245035 D 272559 CDS YP_209964.1 60679820 3288328 246538..246858 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3410 SWALL:AAO78516 (EMBL:AE016940) (107 aa) fasta scores: E(): 1.2e-29, 84.9% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein YbjQ or STM0930 or STY0926 or t2003 SWALL:YBJQ_SALTY (SWALL:Q8XGV2) (107 aa) fasta scores: E(): 1e-22, 63.1% id in 103 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein YbjQ or STM0930 or STY0926 or t2003 SWALL:AAO69615 (EMBL:AE008739) (107 aa) fasta scores: E(): 1e-22, 63.1% id in 103 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YbjQ or B0866 or C0999 or Z1099 or ECS0952 SWALL:YBJQ_ECOLI (SWALL:P75819) (107 aa) fasta scores: E(): 1.6e-22, 63.1% id in 103 aa; hypothetical protein 246858 3288328 BF9343_0223 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209964.1 246538 D 272559 CDS YP_209965.1 60679821 3288379 complement(246933..248525) 1 NC_003228.3 Similar to Coffea arabica alpha-galactosidase precursor SWALL:AGAL_COFAR (SWALL:Q42656) (378 aa) fasta scores: E(): 3.1e-31, 39.13% id in 368 aa, and to Bacteroides thetaiotaomicron alpha-galactosidase precursor BT4157 SWALL:AAO79262 (EMBL:AE016944) (606 aa) fasta scores: E(): 1.5e-105, 49.22% id in 518 aa, and to Bacteroides thetaiotaomicron alpha-galactosidase precursor BT2662 SWALL:AAO77769 (EMBL:AE016937) (507 aa) fasta scores: E(): 1.2e-90, 48.52% id in 509 aa; putative exported alpha-galactosidase 248525 3288379 BF9343_0224 Bacteroides fragilis NCTC 9343 putative exported alpha-galactosidase YP_209965.1 246933 R 272559 CDS YP_209966.1 60679822 3285983 complement(248617..250461) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2858 SWALL:AAO77964 (EMBL:AE016937) (646 aa) fasta scores: E(): 2.6e-44, 36.5% id in 652 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2904 SWALL:AAO78010 (EMBL:AE016938) (640 aa) fasta scores: E(): 6.1e-44, 34.38% id in 666 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3013 SWALL:AAO78119 (EMBL:AE016938) (644 aa) fasta scores: E(): 3.4e-39, 35.84% id in 664 aa; hypothetical protein 250461 3285983 BF9343_0225 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209966.1 248617 R 272559 CDS YP_209967.1 60679823 3285963 complement(250476..253874) 1 NC_003228.3 Similar to Bacteroides fragilis FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 1.5e-44, 27.16% id in 1178 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3012 SWALL:AAO78118 (EMBL:AE016938) (1125 aa) fasta scores: E(): 6.4e-178, 43.82% id in 1125 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2905 SWALL:AAO78011 (EMBL:AE016938) (1067 aa) fasta scores: E(): 2.3e-150, 43.62% id in 1043 aa; putative outer membrane protein 253874 3285963 BF9343_0226 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_209967.1 250476 R 272559 CDS YP_209968.1 60679824 3288415 complement(253890..254021) 1 NC_003228.3 no significant database matches; hypothetical protein 254021 3288415 BF9343_0227 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209968.1 253890 R 272559 CDS YP_209969.1 60679825 3288427 complement(254040..255188) 1 NC_003228.3 Similar to Bacteroides fragilis regulatory cluster gene FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 2.1e-18, 34.27% id in 213 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT4635 SWALL:AAO79740 (EMBL:AE016946) (404 aa) fasta scores: E(): 3.2e-36, 35.26% id in 346 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT3518 SWALL:AAO78624 (EMBL:AE016941) (400 aa) fasta scores: E(): 6e-30, 33.73% id in 329 aa; putative regulatory protein 255188 3288427 BF9343_0228 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_209969.1 254040 R 272559 CDS YP_209970.1 60679826 3288397 complement(255275..255838) 1 NC_003228.3 Similar to Bacteroides fragilis ECF-type sigma factor RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 1.5e-11, 28.65% id in 171 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT2169 SWALL:AAO77276 (EMBL:AE016935) (182 aa) fasta scores: E(): 2.5e-12, 30.9% id in 165 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1877 SWALL:AAO76984 (EMBL:AE016933) (196 aa) fasta scores: E(): 3.3e-11, 28.96% id in 183 aa; putative ECF-type sigma factor 255838 3288397 BF9343_0229 Bacteroides fragilis NCTC 9343 putative ECF-type sigma factor YP_209970.1 255275 R 272559 CDS YP_209971.1 60679827 3288353 complement(256048..258207) 1 NC_003228.3 Similar to Bacillus stearothermophilus alpha-galactosidase AgaA SWALL:Q9ALJ4 (EMBL:AY013286) (729 aa) fasta scores: E(): 2.2e-65, 32.3% id in 650 aa, and to Bacteroides thetaiotaomicron alpha-galactosidase BT3131 SWALL:AAO78237 (EMBL:AE016939) (718 aa) fasta scores: E(): 2.8e-186, 62.22% id in 720 aa, and to Bacteroides thetaiotaomicron alpha-galactosidase BT2851 SWALL:AAO77957 (EMBL:AE016937) (721 aa) fasta scores: E(): 1.3e-185, 62.63% id in 720 aa. Note: Also similar to BF0498 (723 aa) fasta scores: E(): 9.6e-125, 44.693% identity in 716 aa overlap; putative exported alpha-galactosidase 258207 3288353 BF9343_0230 Bacteroides fragilis NCTC 9343 putative exported alpha-galactosidase YP_209971.1 256048 R 272559 CDS YP_209972.1 60679828 3285946 258451..259005 1 NC_003228.3 no significant database matches; putative lipoprotein 259005 3285946 BF9343_0231 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_209972.1 258451 D 272559 CDS YP_209973.1 60679829 3286006 259129..261333 1 NC_003228.3 Similar to Brucella suis inorganic pyrophosphatase (fragment) but extended at the N-terminus SWALL:Q8VRZ4 (EMBL:AF417512) (680 aa) fasta scores: E(): 9.2e-66, 43.63% id in 715 aa, and to entire Bacteroides thetaiotaomicron pyrophosphate-energized vacuolar membrane proton pump BT3411 SWALL:AAO78517 (EMBL:AE016940) (734 aa) fasta scores: E(): 0, 93.46% id in 734 aa, and to entire Acetabularia mediterranea inorganic pyrophosphatase SWALL:Q9STC8 (EMBL:D88820) (751 aa) fasta scores: E(): 6.8e-85, 46.5% id in 772 aa; putative inorganic pyrophosphatase 261333 3286006 BF9343_0232 Bacteroides fragilis NCTC 9343 putative inorganic pyrophosphatase YP_209973.1 259129 D 272559 CDS YP_209974.1 60679830 3288457 261582..262907 1 NC_003228.3 no significant database matches; hypothetical protein 262907 3288457 BF9343_0233 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209974.1 261582 D 272559 CDS YP_209975.1 60679831 3288088 complement(262986..263201) 1 NC_003228.3 no significant database matches; hypothetical protein 263201 3288088 BF9343_0234 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209975.1 262986 R 272559 CDS YP_209976.1 60679832 3288900 263354..263959 1 NC_003228.3 Similar to Escherichia coli ribonuclease HII RnhB or B0183 SWALL:RNH2_ECOLI (SWALL:P10442) (198 aa) fasta scores: E(): 2.6e-27, 51.13% id in 176 aa, and to Bacteroides thetaiotaomicron ribonuclease HII BT3412 SWALL:AAO78518 (EMBL:AE016940) (200 aa) fasta scores: E(): 3.8e-70, 87.87% id in 198 aa, and to Porphyromonas gingivalis ribonuclease HII RnhB SWALL:RNH2_PORGI (SWALL:Q51832) (168 aa) fasta scores: E(): 4.3e-38, 63.46% id in 156 aa; putative ribonuclease HII 263959 rnhB 3288900 rnhB Bacteroides fragilis NCTC 9343 putative ribonuclease HII YP_209976.1 263354 D 272559 CDS YP_209977.1 60679833 3288446 complement(263967..264893) 1 NC_003228.3 Similar to Staphylococcus epidermidis cationic transporter se1958 SWALL:Q8CN83 (EMBL:AE016750) (315 aa) fasta scores: E(): 7.9e-27, 31.05% id in 293 aa, and to Bacteroides thetaiotaomicron mg2+/co2+ transporter BT3414 SWALL:AAO78520 (EMBL:AE016940) (309 aa) fasta scores: E(): 2.1e-105, 88.99% id in 309 aa, and to Clostridium acetobutylicum magnesium and cobalt transporter CAC0294 SWALL:Q97MA4 (EMBL:AE007544) (315 aa) fasta scores: E(): 9.7e-34, 37.28% id in 295 aa; putative cationic transporter 264893 3288446 BF9343_0236 Bacteroides fragilis NCTC 9343 putative cationic transporter YP_209977.1 263967 R 272559 CDS YP_209978.1 60679834 3289206 265179..266693 1 NC_003228.3 Similar to Clostridium acetobutylicum 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI or Pgm-I or CAC0712 SWALL:GPMI_CLOAB (SWALL:Q97L53) (510 aa) fasta scores: E(): 8.5e-91, 49.7% id in 511 aa, and to Bacteroides thetaiotaomicron 2,3-bisphosphoglycerate-independent phosphoglycerate mutase BT3419 SWALL:AAO78525 (EMBL:AE016940) (504 aa) fasta scores: E(): 3.8e-176, 90.27% id in 504 aa, and to Methanosarcina acetivorans 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 Gpmi2 or ma4007 SWALL:GMI2_METAC (SWALL:Q8TIY2) (521 aa) fasta scores: E(): 1.4e-91, 50.09% id in 505 aa; putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 266693 gpmI 3289206 gpmI Bacteroides fragilis NCTC 9343 putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_209978.1 265179 D 272559 CDS YP_209979.1 60679835 3288585 266842..267936 1 NC_003228.3 Similar to C terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1597 SWALL:AAO76704 (EMBL:AE016932) (539 aa) fasta scores: E(): 5.7e-57, 49.53% id in 325 aa, and to C terminus of Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT1800 SWALL:AAO76907 (EMBL:AE016933) (616 aa) fasta scores: E(): 1.4e-51, 44.76% id in 315 aa, and to C terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1237 SWALL:AAO76344 (EMBL:AE016931) (641 aa) fasta scores: E(): 7.5e-43, 41.75% id in 364 aa; putative two-component system sensor kinase 267936 3288585 BF9343_0238 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase YP_209979.1 266842 D 272559 CDS YP_209980.1 60679836 3285949 267933..269876 1 NC_003228.3 Similar to C-terminus of Anabaena sp. Two-component regulator kinase HepK or ALL4496 SWALL:P70777 (EMBL:U68034) (575 aa) fasta scores: E(): 1.5e-06, 28.04% id in 189 aa, and to entire Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT1598 SWALL:AAO76705 (EMBL:AE016932) (655 aa) fasta scores: E(): 3.9e-41, 26.09% id in 663 aa, and to entire Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1801 SWALL:AAO76908 (EMBL:AE016933) (653 aa) fasta scores: E(): 3.4e-32, 23.93% id in 660 aa; putative two-component sensor histidine kinase 269876 3285949 BF9343_0239 Bacteroides fragilis NCTC 9343 putative two-component sensor histidine kinase YP_209980.1 267933 D 272559 CDS YP_209981.1 60679837 3286003 270231..270812 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3427 SWALL:AAO78533 (EMBL:AE016940) (193 aa) fasta scores: E(): 8.3e-69, 86.01% id in 193 aa, and to Chlorobium tepidum hypothetical protein CT1194 SWALL:Q8KD60 (EMBL:AE012880) (190 aa) fasta scores: E(): 5.1e-20, 35.35% id in 181 aa; hypothetical protein 270812 3286003 BF9343_0240 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209981.1 270231 D 272559 CDS YP_209982.1 60679838 3288594 270809..273775 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane assembly protein BT4129 SWALL:AAO79234 (EMBL:AE016943) (838 aa) fasta scores: E(): 4.5e-17, 20.65% id in 983 aa; hypothetical protein 273775 3288594 BF9343_0241 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209982.1 270809 D 272559 CDS YP_209983.1 60679839 3288608 complement(273876..275834) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis DNA gyrase B subunit GyrB SWALL:Q9S1B0 (EMBL:AB017713) (653 aa) fasta scores: E(): 0, 98.77% id in 653 aa, and to Bacteroides thetaiotaomicron DNA gyrase subunit B BT3429 SWALL:AAO78535 (EMBL:AE016940) (653 aa) fasta scores: E(): 0, 95.09% id in 652 aa, and to Bacteroides fragilis DNA gyrase B subunit GyrB (fragment) but extended towards the N and C termini SWALL:Q9AQL5 (EMBL:AB048185) (477 aa) fasta scores: E(): 2.6e-184, 100% id in 477 aa; DNA gyrase subunit B 275834 3288608 BF9343_0242 Bacteroides fragilis NCTC 9343 DNA gyrase subunit B YP_209983.1 273876 R 272559 CDS YP_209984.1 60679840 3288124 complement(276015..276269) 1 NC_003228.3 Similar to Salmonella typhimurium, and Salmonella typhi 30S ribosomal protein S20 RpsT or STM0043 or STY0052 or t0045 SWALL:RS20_SALTY (SWALL:P41787) (86 aa) fasta scores: E(): 0.00066, 38.37% id in 86 aa, and to Bacteroides thetaiotaomicron ribosomal protein S20 BT3430 SWALL:AAO78536 (EMBL:AE016940) (84 aa) fasta scores: E(): 5.2e-26, 90.47% id in 84 aa, and to Mycobacterium tuberculosis 30S ribosomal protein S20 RpsT or Rv2412 or MT2485 or MTCY253.08c SWALL:RS20_MYCTU (SWALL:P71731) (86 aa) fasta scores: E(): 3.9e-07, 45.34% id in 86 aa; 30S ribosomal protein S20 276269 rpsT 3288124 rpsT Bacteroides fragilis NCTC 9343 30S ribosomal protein S20 YP_209984.1 276015 R 272559 CDS YP_209985.1 60679841 3288612 276679..277407 1 NC_003228.3 Limited similarity to Bacillus subtilis DNA repair protein RecO SWALL:RECO_BACSU (SWALL:P42095) (255 aa) fasta scores: E(): 0.00079, 24.03% id in 258 aa, and to Bacteroides thetaiotaomicron DNA repair protein BT3431 SWALL:Q8A275 (EMBL:AE016940) (242 aa) fasta scores: E(): 6.9e-87, 83.05% id in 242 aa, and to Bacteroides forsythus hypothetical protein SWALL:AAO33829 (EMBL:AY184490) (208 aa) fasta scores: E(): 9.1e-33, 43.75% id in 208 aa; possible DNA repair protein RecO 277407 3288612 BF9343_0244 Bacteroides fragilis NCTC 9343 possible DNA repair protein RecO YP_209985.1 276679 D 272559 CDS YP_209986.1 60679842 3288593 complement(277517..277966) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with a conserved domain BT3443 SWALL:AAO78549 (EMBL:AE016940) (135 aa) fasta scores: E(): 3.5e-36, 91.85% id in 135 aa, and to Chlorobium tepidum hypothetical protein CT0607 SWALL:Q8KES5 (EMBL:AE012834) (152 aa) fasta scores: E(): 3e-15, 42.66% id in 150 aa, and to Myxococcus xanthus hypothetical 18.5 kDa protein SWALL:Q50854 (EMBL:U20669) (175 aa) fasta scores: E(): 3e-14, 43.15% id in 146 aa; hypothetical protein 277966 3288593 BF9343_0245 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209986.1 277517 R 272559 CDS YP_209987.1 60679843 3286699 complement(278041..279351) 1 NC_003228.3 Similar to Prevotella albensis cell division protein FtsZ SWALL:Q9S344 (EMBL:AJ249201) (438 aa) fasta scores: E(): 3.2e-86, 59.55% id in 445 aa, and to Bacteroides thetaiotaomicron cell division protein FtsZ BT3444 SWALL:AAO78550 (EMBL:AE016940) (435 aa) fasta scores: E(): 4.9e-141, 93.8% id in 436 aa, and to Porphyromonas gingivalis cell division protein FtsZ SWALL:FTSZ_PORGI (SWALL:O08466) (457 aa) fasta scores: E(): 4.2e-68, 52.02% id in 419 aa; putative cell division protein 279351 ftsZ 3286699 ftsZ Bacteroides fragilis NCTC 9343 putative cell division protein YP_209987.1 278041 R 272559 CDS YP_209988.1 60679844 3285851 complement(279378..280808) 1 NC_003228.3 Similar to Prevotella albensis cell division protein FtsA SWALL:Q9S345 (EMBL:AJ249201) (481 aa) fasta scores: E(): 1.6e-60, 44.19% id in 482 aa, and to Bacteroides thetaiotaomicron cell division protein FtsA BT3445 SWALL:AAO78551 (EMBL:AE016940) (483 aa) fasta scores: E(): 7e-110, 73.51% id in 487 aa, and to Porphyromonas gingivalis cell division protein FtsA SWALL:FTSA_PORGI (SWALL:O07827) (456 aa) fasta scores: E(): 1.2e-25, 28.73% id in 449 aa; putative cell division protein 280808 ftsA 3285851 ftsA Bacteroides fragilis NCTC 9343 putative cell division protein YP_209988.1 279378 R 272559 CDS YP_209989.1 60679845 3289016 complement(280885..281625) 1 NC_003228.3 Similar to Porphyromonas gingivalis cell division protein FtsQ SWALL:O07826 (EMBL:AB004555) (282 aa) fasta scores: E(): 1e-21, 27.27% id in 242 aa, and to Bacteroides thetaiotaomicron cell division protein FtsQ BT3446 SWALL:AAO78552 (EMBL:AE016940) (248 aa) fasta scores: E(): 7.6e-77, 78.36% id in 245 aa, and to fragment of Prevotella albensis cell division protein FtsQ (fragment) SWALL:Q9S346 (EMBL:AJ249201) (141 aa) fasta scores: E(): 7.9e-07, 46.61% id in 133 aa; putative cell division protein 281625 ftsQ 3289016 ftsQ Bacteroides fragilis NCTC 9343 putative cell division protein YP_209989.1 280885 R 272559 CDS YP_209990.1 60679846 3289166 complement(281657..283051) 1 NC_003228.3 Similar to Porphyromonas gingivalis UDP-N-acetylmuramate--L-alanine ligase MurC SWALL:MURC_PORGI (SWALL:Q51831) (433 aa) fasta scores: E(): 1.6e-91, 54.65% id in 430 aa, and to Bacteroides thetaiotaomicron UDP-N-acetylmuramate--alanine ligase BT3447 SWALL:AAO78553 (EMBL:AE016940) (467 aa) fasta scores: E(): 1.1e-156, 90.02% id in 451 aa, and to Haemophilus influenzae UDP-N-acetylmuramate--L-alanine ligase MurC or HI1139 SWALL:MURC_HAEIN (SWALL:P45066) (475 aa) fasta scores: E(): 7.6e-42, 31.55% id in 469 aa; putative UDP-N-acetylmuramate--L-alanine ligase 283051 murC 3289166 murC Bacteroides fragilis NCTC 9343 putative UDP-N-acetylmuramate--L-alanine ligase YP_209990.1 281657 R 272559 CDS YP_209991.1 60679847 3286064 complement(283048..284214) 1 NC_003228.3 Similar to Bacillus halodurans UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG or BH2565 SWALL:MURG_BACHD (SWALL:Q9K9T0) (363 aa) fasta scores: E(): 1.1e-45, 36.61% id in 366 aa, and to Bacteroides thetaiotaomicron UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase BT3448 SWALL:AAO78554 (EMBL:AE016940) (372 aa) fasta scores: E(): 3.2e-113, 83.28% id in 365 aa, and to Enterococcus hirae UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG SWALL:MURG_ENTHR (SWALL:O07670) (360 aa) fasta scores: E(): 1.8e-43, 36.48% id in 370 aa.; probable UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 284214 murG 3286064 murG Bacteroides fragilis NCTC 9343 probable UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_209991.1 283048 R 272559 CDS YP_209992.1 60679848 3288971 complement(284192..285487) 1 NC_003228.3 Similar to Streptococcus thermophilus RodA SWALL:Q8L331 (EMBL:AF399832) (416 aa) fasta scores: E(): 5.9e-21, 25.51% id in 392 aa, and to Bacteroides thetaiotaomicron rod shape-determining protein RodA BT3449 SWALL:Q8A257 (EMBL:AE016940) (438 aa) fasta scores: E(): 4.2e-142, 82.67% id in 433 aa, and to Porphyromonas gingivalis cell division protein FtsW, putative PG0579 SWALL:AAQ65766 (EMBL:AE017174) (418 aa) fasta scores: E(): 4.2e-46, 37.89% id in 409 aa; putative transmembrane rod-shape determining protein 285487 ftsW 3288971 ftsW Bacteroides fragilis NCTC 9343 putative transmembrane rod-shape determining protein YP_209992.1 284192 R 272559 CDS YP_209993.1 60679849 3288066 complement(285546..286880) 1 NC_003228.3 Similar to Bacillus subtilis UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD SWALL:MURD_BACSU (SWALL:Q03522) (451 aa) fasta scores: E(): 1.3e-43, 35.63% id in 449 aa, and to Bacteroides thetaiotaomicron UDP-N-acetylmuramoylalanine--D-glutamate ligase BT3450 SWALL:Q8A256 (EMBL:AE016940) (413 aa) fasta scores: E(): 1.1e-143, 91.52% id in 413 aa, and to Thermoanaerobacter tengcongensis UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD or TTE1647 SWALL:MURD_THETN (SWALL:Q8R9G4) (450 aa) fasta scores: E(): 4.7e-48, 38.22% id in 450 aa; putative UDP-N-acetylmuramoylalanine--D-glutamate ligase 286880 murD 3288066 murD Bacteroides fragilis NCTC 9343 putative UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_209993.1 285546 R 272559 CDS YP_209994.1 60679850 3289246 complement(287020..288288) 1 NC_003228.3 Similar to Pasteurella multocida phospho-N-acetylmuramoyl-pentapeptide-transferase MraY or PM0139 SWALL:MRAY_PASMU (SWALL:P57816) (360 aa) fasta scores: E(): 7.3e-26, 34.97% id in 426 aa, and to Bacteroides thetaiotaomicron phospho-N-acetylmuramoyl-pentapeptide-transferase BT3451 SWALL:Q8A255 (EMBL:AE016940) (422 aa) fasta scores: E(): 3.5e-159, 95.02% id in 422 aa, and to Porphyromonas gingivalis phospho-N-acetylmuramoyl-pentapeptide-transferase MraY or PG0577 SWALL:AAQ65764 (EMBL:AE017174) (419 aa) fasta scores: E(): 8.7e-97, 58.72% id in 424 aa; putative UDP-N-acetylmuramoyl-pentapeptide:undecaprenyl-phosphate- phosphatase 288288 mraY 3289246 mraY Bacteroides fragilis NCTC 9343 putative UDP-N-acetylmuramoyl-pentapeptide:undecaprenyl-phosphate- phosphatase YP_209994.1 287020 R 272559 CDS YP_209995.1 60679851 3289272 complement(288374..289831) 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase MurE or MurE2 or TTE1649 SWALL:MURE_THETN (SWALL:Q8R9G2) (492 aa) fasta scores: E(): 1.9e-61, 39.91% id in 486 aa, and to Bacteroides thetaiotaomicron UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase BT3452 SWALL:AAO78558 (EMBL:AE016940) (482 aa) fasta scores: E(): 3.2e-161, 90.66% id in 482 aa, and to Clostridium tetani UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase CTC01632 SWALL:AAO36175 (EMBL:AE015941) (485 aa) fasta scores: E(): 4.1e-65, 42.74% id in 489 aa; probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase 289831 murE 3289272 murE Bacteroides fragilis NCTC 9343 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase YP_209995.1 288374 R 272559 CDS YP_209996.1 60679852 3289012 complement(289849..291948) 1 NC_003228.3 Similar to Bacillus subtilis penicillin-binding protein PbpB or BSU15160 SWALL:PBPB_BACSU (SWALL:Q07868) (716 aa) fasta scores: E(): 1.2e-21, 24.76% id in 735 aa, and to Bacteroides thetaiotaomicron penicillin-binding protein BT3453 SWALL:Q8A253 (EMBL:AE016940) (708 aa) fasta scores: E(): 3.8e-190, 79.83% id in 709 aa, and to Porphyromonas gingivalis penicillin-binding protein 2, putative PG0575 SWALL:AAQ65762 (EMBL:AE017174) (733 aa) fasta scores: E(): 2.3e-77, 38.55% id in 721 aa; putative cell division specific transpeptidase/penicillin-binding protein 291948 ftsI 3289012 ftsI Bacteroides fragilis NCTC 9343 putative cell division specific transpeptidase/penicillin-binding protein YP_209996.1 289849 R 272559 CDS YP_209997.1 60679853 3285984 complement(291976..292317) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3454 SWALL:AAO78560 (EMBL:AE016940) (118 aa) fasta scores: E(): 8.7e-34, 91.58% id in 107 aa; hypothetical protein 292317 3285984 BF9343_0256 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209997.1 291976 R 272559 CDS YP_209998.1 60679854 3289255 complement(292346..293260) 1 NC_003228.3 Similar to Enterococcus faecalis S-adenosyl-methyltransferase MraW or EF0989 SWALL:MRAW_ENTFA (SWALL:O07104) (318 aa) fasta scores: E(): 1.2e-42, 45.25% id in 316 aa, and to Bacteroides thetaiotaomicron S-adenosyl-methyltransferase MraW BT3455 SWALL:AAO78561 (EMBL:AE016940) (304 aa) fasta scores: E(): 1e-103, 91.44% id in 304 aa, and to Enterococcus faecalis S-adenosyl-methyltransferase MraW or EF0989 SWALL:AAO80795 (EMBL:U94707) (319 aa) fasta scores: E(): 3.4e-42, 44.93% id in 316 aa; putative S-adenosyl-methyltransferase 293260 mraW 3289255 mraW Bacteroides fragilis NCTC 9343 putative S-adenosyl-methyltransferase YP_209998.1 292346 R 272559 CDS YP_209999.1 60679855 3286055 complement(293257..293733) 1 NC_003228.3 Similar to Escherichia coli protein MraZ or B0081 SWALL:MRAZ_ECOLI (SWALL:P22186) (152 aa) fasta scores: E(): 2.8e-08, 30.83% id in 120 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3456 SWALL:AAO78562 (EMBL:AE016940) (156 aa) fasta scores: E(): 3e-46, 78.8% id in 151 aa, and to Clostridium tetani MraZ protein or CTC01636 SWALL:AAO36179 (EMBL:AE015941) (142 aa) fasta scores: E(): 1.4e-09, 33.85% id in 127 aa; putative cell division protein 293733 mraZ 3286055 mraZ Bacteroides fragilis NCTC 9343 putative cell division protein YP_209999.1 293257 R 272559 CDS YP_210000.1 60679856 3285865 complement(293840..294340) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3610 SWALL:AAO78715 (EMBL:AE016941) (156 aa) fasta scores: E(): 2.6e-09, 33.83% id in 133 aa, and to Bacteroides thetaiotaomicron putative DNA-binding protein BT0281 SWALL:AAO75388 (EMBL:AE016927) (213 aa) fasta scores: E(): 5.9e-05, 26.53% id in 147 aa; hypothetical protein 294340 3285865 BF9343_0259 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210000.1 293840 R 272559 CDS YP_210001.1 60679857 3288614 294606..294785 1 NC_003228.3 no significant database matches; hypothetical protein 294785 3288614 BF9343_0260 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210001.1 294606 D 272559 CDS YP_210002.1 60679858 3287288 complement(294884..295390) 1 NC_003228.3 Similar to Mycobacterium smegmatis extracytoplasmic function alternative sigma factor SigE SWALL:O05767 (EMBL:U87307) (204 aa) fasta scores: E(): 3.2e-08, 29.41% id in 153 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3457 SWALL:AAO78563 (EMBL:AE016940) (167 aa) fasta scores: E(): 6.4e-58, 89.82% id in 167 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1197 SWALL:AAO76304 (EMBL:AE016930) (167 aa) fasta scores: E(): 7.4e-58, 92.16% id in 166 aa; putative extracytoplasmic function alternative sigma factor 295390 sigE 3287288 sigE Bacteroides fragilis NCTC 9343 putative extracytoplasmic function alternative sigma factor YP_210002.1 294884 R 272559 CDS YP_210003.1 60679859 3288698 295588..295929 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1421 SWALL:AAO76528 (EMBL:AE016931) (104 aa) fasta scores: E(): 1.4e-11, 41.23% id in 97 aa; hypothetical protein 295929 3288698 BF9343_0262 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210003.1 295588 D 272559 CDS YP_210004.1 60679860 3288623 296004..298163 1 NC_003228.3 Similar to Leptospira interrogans hemin receptor LA3149 SWALL:Q8F1I6 (EMBL:AE011477) (777 aa) fasta scores: E(): 7.1e-15, 26.54% id in 682 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1420 SWALL:AAO76527 (EMBL:AE016931) (718 aa) fasta scores: E(): 1.2e-207, 67.45% id in 719 aa, and to Caulobacter crescentus TonB-dependent receptor CC0214 SWALL:Q9ABL3 (EMBL:AE005695) (687 aa) fasta scores: E(): 1e-13, 24.73% id in 744 aa; hypothetical protein 298163 3288623 BF9343_0263 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210004.1 296004 D 272559 CDS YP_210005.1 60679861 3288632 298160..298663 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1419 SWALL:AAO76526 (EMBL:AE016931) (164 aa) fasta scores: E(): 2e-33, 59.28% id in 167 aa; hypothetical protein 298663 3288632 BF9343_0264 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210005.1 298160 D 272559 CDS YP_210006.1 60679862 3285544 298929..299747 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3458 SWALL:AAO78564 (EMBL:AE016940) (272 aa) fasta scores: E(): 1.1e-98, 87.13% id in 272 aa, and to Shewanella oneidensis acyltransferase family protein SO1238 SWALL:Q8EHI3 (EMBL:AE015568) (619 aa) fasta scores: E(): 1.2e-13, 25% id in 272 aa, and to Vibrio cholerae conserved hypothetical protein/hemolysin, putative VCA0646 SWALL:Q9KLU5 (EMBL:AE004394) (605 aa) fasta scores: E(): 1.4e-11, 28.72% id in 275 aa; hypothetical protein 299747 3285544 BF9343_0265 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210006.1 298929 D 272559 CDS YP_210007.1 60679863 3285906 299778..300791 1 NC_003228.3 Similar to Prevotella melaninogenica hemolysin A PhyA SWALL:Q51888 (EMBL:U27587) (332 aa) fasta scores: E(): 2e-91, 69.56% id in 322 aa, and to Bacteroides thetaiotaomicron hemolysin A BT3459 SWALL:AAO78565 (EMBL:AE016940) (337 aa) fasta scores: E(): 1.2e-112, 82.38% id in 335 aa, and to Shewanella oneidensis acyltransferase family protein SO1238 SWALL:Q8EHI3 (EMBL:AE015568) (619 aa) fasta scores: E(): 9.6e-15, 31.62% id in 313 aa; putative hemolysin A 300791 3285906 BF9343_0266 Bacteroides fragilis NCTC 9343 putative hemolysin A YP_210007.1 299778 D 272559 CDS YP_210008.1 60679864 3285175 complement(300763..302091) 1 NC_003228.3 Similar to Salmonella typhimurium deoxyguanosinetriphosphate triphosphohydrolase Dgt or STM0208 SWALL:DGTP_SALTY (SWALL:P40733) (504 aa) fasta scores: E(): 2.3e-11, 30.45% id in 509 aa, and to Bacteroides thetaiotaomicron dGTP triphosphohydrolase BT3460 SWALL:AAO78566 (EMBL:AE016940) (450 aa) fasta scores: E(): 6.6e-150, 84.22% id in 450 aa, and to Pseudomonas aeruginosa deoxyguanosinetriphosphate triphosphohydrolase-like protein Dgt2 or PA3043 SWALL:DGT2_PSEAE (SWALL:Q9HZG5) (443 aa) fasta scores: E(): 2.9e-53, 37.36% id in 455 aa; putative deoxyguanosinetriphosphate triphosphohydrolase 302091 dgt 3285175 dgt Bacteroides fragilis NCTC 9343 putative deoxyguanosinetriphosphate triphosphohydrolase YP_210008.1 300763 R 272559 CDS YP_210009.1 60679865 3285475 302193..302627 1 NC_003228.3 Similar to Zymomonas mobilis deoxyuridine 5'-triphosphate nucleotidohydrolase Dut SWALL:DUT_ZYMMO (SWALL:Q9X3X5) (146 aa) fasta scores: E(): 7.2e-24, 54.96% id in 131 aa, and to Bacteroides thetaiotaomicron deoxyuridine 5'-triphosphate nucleotidohydrolase BT3461 SWALL:AAO78567 (EMBL:AE016940) (144 aa) fasta scores: E(): 3.3e-52, 91.66% id in 144 aa, and to Fusobacterium nucleatum deoxyuridine 5'-triphosphate nucleotidohydrolase Dut or FN1028 SWALL:DUT_FUSNN (SWALL:Q8RER7) (146 aa) fasta scores: E(): 1.7e-29, 58.04% id in 143 aa; putative deoxyuridine 5'-triphosphate nucleotidohydrolase 302627 dut 3285475 dut Bacteroides fragilis NCTC 9343 putative deoxyuridine 5'-triphosphate nucleotidohydrolase YP_210009.1 302193 D 272559 CDS YP_210010.1 60679866 3288410 302658..304415 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TPR domain protein BT3462 SWALL:Q8A244 (EMBL:AE016940) (584 aa) fasta scores: E(): 1.4e-163, 72.94% id in 584 aa, and to Porphyromonas gingivalis TPR domain protein PG0954 SWALL:AAQ66084 (EMBL:AE017175) (579 aa) fasta scores: E(): 2.4e-51, 30.39% id in 556 aa; hypothetical protein 304415 3288410 BF9343_0269 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210010.1 302658 D 272559 CDS YP_210011.1 60679867 3288435 304412..304999 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3463 SWALL:AAO78569 (EMBL:AE016940) (193 aa) fasta scores: E(): 9.7e-35, 59.14% id in 186 aa; putative lipoprotein 304999 3288435 BF9343_0270 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_210011.1 304412 D 272559 CDS YP_210012.1 60679868 3288385 304996..306309 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative peptidase BT3464 SWALL:AAO78570 (EMBL:AE016940) (435 aa) fasta scores: E(): 1.4e-99, 80.77% id in 437 aa, and to Chlorobium tepidum zinc metalloendopeptidase CT0558 SWALL:Q8KEX4 (EMBL:AE012830) (303 aa) fasta scores: E(): 4e-09, 28.57% id in 301 aa, and to Pseudomonas syringae peptidase, M23/M37 family PSPTO5328 SWALL:AAO58754 (EMBL:AE016875) (440 aa) fasta scores: E(): 8.8e-09, 23.04% id in 447 aa; putative exported peptidase 306309 3288385 BF9343_0271 Bacteroides fragilis NCTC 9343 putative exported peptidase YP_210012.1 304996 D 272559 CDS YP_210013.1 60679869 3288416 306379..310368 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT3465 SWALL:AAO78571 (EMBL:AE016940) (1345 aa) fasta scores: E(): 0, 68.97% id in 1331 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT2923 SWALL:AAO78029 (EMBL:AE016938) (1338 aa) fasta scores: E(): 7.8e-173, 37.77% id in 1337 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT2897 SWALL:AAO78003 (EMBL:AE016938) (1326 aa) fasta scores: E(): 5.5e-164, 37.48% id in 1358 aa; putative two-component system sensor histidine kinase/response regulator fusion protein 310368 3288416 BF9343_0272 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase/response regulator fusion protein YP_210013.1 306379 D 272559 CDS YP_210014.1 60679870 3285876 complement(310550..311626) 1 NC_003228.3 Similar to Streptomyces chartreusis alpha-L-arabinofuranosidase II precursor SWALL:ABF2_STRCX (SWALL:P82594) (328 aa) fasta scores: E(): 2.7e-06, 33.33% id in 324 aa, and to Bacteroides thetaiotaomicron putative glycosylhydrolase BT3515 SWALL:AAO78621 (EMBL:AE016941) (389 aa) fasta scores: E(): 2e-115, 73.48% id in 347 aa, and to Bacteroides thetaiotaomicron putative glycosylhydrolase BT3467 SWALL:AAO78573 (EMBL:AE016940) (365 aa) fasta scores: E(): 9.9e-95, 60.57% id in 350 aa; hypothetical protein 311626 3285876 BF9343_0273 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210014.1 310550 R 272559 CDS YP_210015.1 60679871 3285910 complement(311708..314206) 1 NC_003228.3 Similar to Agrobacterium tumefaciens beta-glucosidase cbg-1 with an N-terminal extension SWALL:BGLS_AGRTU (SWALL:P27034) (818 aa) fasta scores: E(): 1.8e-62, 37.88% id in 821 aa, and to Bacteroides thetaiotaomicron beta-glucosidase BT3300 SWALL:AAO78406 (EMBL:AE016940) (825 aa) fasta scores: E(): 0, 61.12% id in 818 aa, and to Rhizobium etli hypothetical protein BglS SWALL:Q8KKX3 (EMBL:U80928) (814 aa) fasta scores: E(): 1.1e-91, 36.66% id in 821 aa; putative beta-glucosidase 314206 3285910 BF9343_0274 Bacteroides fragilis NCTC 9343 putative beta-glucosidase YP_210015.1 311708 R 272559 CDS YP_210016.1 60679872 3288369 complement(314349..315515) 1 NC_003228.3 Similar to Bacillus circulans alpha-1,6-mannanase precursor AmaN6 SWALL:Q9Z4P9 (EMBL:AB024331) (589 aa) fasta scores: E(): 1.6e-15, 27.24% id in 345 aa, and to Bacteroides thetaiotaomicron putative hydrolase BT2631 SWALL:AAO77738 (EMBL:AE016936) (385 aa) fasta scores: E(): 2.8e-91, 57.94% id in 390 aa, and to Bacteroides thetaiotaomicron putative hydrolase BT3782 SWALL:AAO78887 (EMBL:AE016942) (387 aa) fasta scores: E(): 2.6e-89, 58.02% id in 374 aa; putative glycosylhydrolase 315515 3288369 BF9343_0275 Bacteroides fragilis NCTC 9343 putative glycosylhydrolase YP_210016.1 314349 R 272559 CDS YP_210017.1 60679873 3288465 complement(315731..317515) 1 NC_003228.3 Similar to Escherichia coli beta-glucuronidase UidA or GusA or GurA or B1617 SWALL:BGLR_ECOLI (SWALL:P05804) (603 aa) fasta scores: E(): 1.6e-16, 24.44% id in 589 aa, and to Bacteroides thetaiotaomicron beta-glucuronidase BT3292 SWALL:AAO78398 (EMBL:AE016939) (591 aa) fasta scores: E(): 3.3e-122, 56.54% id in 596 aa, and to Streptomyces coelicolor putative hydrolase SCO7506 or SCBAC17A6.39 SWALL:Q93J91 (EMBL:AL939131) (606 aa) fasta scores: E(): 1.2e-73, 43.8% id in 589 aa; putative exported glycosylhydrolase 317515 3288465 BF9343_0276 Bacteroides fragilis NCTC 9343 putative exported glycosylhydrolase YP_210017.1 315731 R 272559 CDS YP_210018.1 60679874 3288437 complement(317632..319668) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3531 SWALL:Q8A1X7 (EMBL:AE016941) (687 aa) fasta scores: E(): 8.6e-59, 35.53% id in 712 aa, and to Arabidopsis thaliana hypothetical protein t24h18_120 SWALL:Q9LXU4 (EMBL:AL353013) (861 aa) fasta scores: E(): 1.2e-10, 22.77% id in 606 aa, and to Rhizobium meliloti hypothetical protein rb1544 or smb20631 SWALL:Q92TH5 (EMBL:AL603647) (640 aa) fasta scores: E(): 1.5e-10, 24.87% id in 575 aa; hypothetical protein 319668 3288437 BF9343_0277 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210018.1 317632 R 272559 CDS YP_210019.1 60679875 3288433 complement(319706..321769) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3531 SWALL:AAO78637 (EMBL:AE016941) (687 aa) fasta scores: E(): 0, 79.03% id in 687 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1003 SWALL:AAO76110 (EMBL:AE016930) (698 aa) fasta scores: E(): 6.7e-13, 31.35% id in 236 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0137 SWALL:AAO75244 (EMBL:AE016926) (641 aa) fasta scores: E(): 6.6e-12, 26.49% id in 453 aa; hypothetical protein 321769 3288433 BF9343_0278 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210019.1 319706 R 272559 CDS YP_210020.1 60679876 3286292 322047..323153 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative glycosylhydrolase BT3467 SWALL:AAO78573 (EMBL:AE016940) (365 aa) fasta scores: E(): 2.2e-113, 68.57% id in 366 aa, and to Bacteroides thetaiotaomicron putative glycosylhydrolase BT3515 SWALL:AAO78621 (EMBL:AE016941) (389 aa) fasta scores: E(): 7.1e-102, 61.64% id in 365 aa, and to Bacteroides thetaiotaomicron putative glycosyslhydrolase BT2912 SWALL:AAO78018 (EMBL:AE016938) (1544 aa) fasta scores: E(): 4.7e-32, 38.33% id in 360 aa, and to Clostridium acetobutylicum beta-xylosidase, family 43 glycosyl hydrolase CAC1529 SWALL:Q97IW1 (EMBL:AE007663) (327 aa) fasta scores: E(): 2.4e-18, 38.39% id in 336 aa; putative lipoprotein 323153 3286292 BF9343_0279 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_210020.1 322047 D 272559 CDS YP_210021.1 60679877 3286202 323256..325070 1 NC_003228.3 Similar to Thermoanaerobacter ethanolicus beta-galactosidase LacZ or LacA SWALL:BGAL_THEET (SWALL:P77989) (743 aa) fasta scores: E(): 1.9e-13, 25.83% id in 391 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT3513 SWALL:AAO78619 (EMBL:AE016940) (604 aa) fasta scores: E(): 7e-190, 70.46% id in 606 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT2922 SWALL:AAO78028 (EMBL:AE016938) (604 aa) fasta scores: E(): 6.2e-185, 69.91% id in 585 aa; putative exported glycosylhydrolase 325070 3286202 BF9343_0280 Bacteroides fragilis NCTC 9343 putative exported glycosylhydrolase YP_210021.1 323256 D 272559 CDS YP_210022.1 60679878 3288377 325166..327676 1 NC_003228.3 Similar to Aspergillus oryzae glutaminase A GtaA SWALL:Q9UVX9 (EMBL:AB029552) (690 aa) fasta scores: E(): 1.1e-51, 30.34% id in 603 aa, and to Bacteroides thetaiotaomicron glutaminase A BT3477 SWALL:AAO78583 (EMBL:AE016940) (840 aa) fasta scores: E(): 0, 71.29% id in 836 aa, and to Bacteroides thetaiotaomicron glutaminase A BT3512 SWALL:AAO78618 (EMBL:AE016940) (837 aa) fasta scores: E(): 0, 66.74% id in 836 aa; putative exported glutaminase 327676 3288377 BF9343_0281 Bacteroides fragilis NCTC 9343 putative exported glutaminase YP_210022.1 325166 D 272559 CDS YP_210023.1 60679879 3288430 complement(327825..330293) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4324 SWALL:AAO79429 (EMBL:AE016944) (880 aa) fasta scores: E(): 1.5e-31, 24.88% id in 896 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1591 SWALL:AAO76698 (EMBL:AE016932) (910 aa) fasta scores: E(): 1.4e-25, 27.28% id in 678 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1247 SWALL:AAO76354 (EMBL:AE016931) (863 aa) fasta scores: E(): 3.2e-23, 27.67% id in 831 aa; hypothetical protein 330293 3288430 BF9343_0282 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210023.1 327825 R 272559 CDS YP_210024.1 60679880 3288386 complement(330313..333930) 1 NC_003228.3 Similar to Bacillus sp. GL1 Alpha-D-mannosidase SWALL:Q9AJR6 (EMBL:AB026114) (1047 aa) fasta scores: E(): 2e-57, 30.4% id in 855 aa, and to Bacteroides thetaiotaomicron alpha-mannosidase BT3774 SWALL:AAO78879 (EMBL:AE016942) (1198 aa) fasta scores: E(): 0, 70.31% id in 1206 aa, and to Clostridium perfringens alpha-mannosidase CPE2080 SWALL:Q8XIN5 (EMBL:AP003192) (1044 aa) fasta scores: E(): 1.6e-71, 32.5% id in 843 aa; putative glycosylhydrolase 333930 3288386 BF9343_0283 Bacteroides fragilis NCTC 9343 putative glycosylhydrolase YP_210024.1 330313 R 272559 CDS YP_210025.1 60679881 3288360 334274..337477 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane protein SusC SWALL:Q45780 (EMBL:L49338) (1038 aa) fasta scores: E(): 7.3e-47, 28.5% id in 1084 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3854 SWALL:AAO78959 (EMBL:AE016942) (1012 aa) fasta scores: E(): 1.2e-91, 36.21% id in 1041 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2461 SWALL:AAO77568 (EMBL:AE016936) (1134 aa) fasta scores: E(): 3.2e-81, 30.7% id in 1065 aa; putative TonB dependent receptor outer membrane protein 337477 3288360 BF9343_0284 Bacteroides fragilis NCTC 9343 putative TonB dependent receptor outer membrane protein YP_210025.1 334274 D 272559 CDS YP_210026.1 60679882 3286036 337485..339371 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative outer membrane protein BT3855 SWALL:AAO78960 (EMBL:AE016942) (643 aa) fasta scores: E(): 2.9e-18, 29.32% id in 682 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0440 SWALL:AAO75547 (EMBL:AE016927) (627 aa) fasta scores: E(): 4.3e-18, 25.58% id in 598 aa; putative lipoprotein 339371 3286036 BF9343_0285 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_210026.1 337485 D 272559 CDS YP_210027.1 60679883 3288396 339391..340098 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3856 SWALL:AAO78961 (EMBL:AE016942) (231 aa) fasta scores: E(): 3.5e-10, 26.97% id in 241 aa; hypothetical protein 340098 3288396 BF9343_0286 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210027.1 339391 D 272559 CDS YP_210028.1 60679884 3288368 340193..340612 1 NC_003228.3 no significant database matches; hypothetical protein 340612 3288368 BF9343_0287 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210028.1 340193 D 272559 CDS YP_210029.1 60679885 3285992 340736..341713 1 NC_003228.3 Similar to Bacillus subtilis endo-arabinase SWALL:O07078 (EMBL:D85132) (324 aa) fasta scores: E(): 1.5e-20, 33.33% id in 312 aa, and to C-terminus of Bacteroides thetaiotaomicron arabinan endo-1,5-alpha-L-arabinosidase A precursor BT3516 SWALL:AAO78622 (EMBL:AE016941) (637 aa) fasta scores: E(): 2e-109, 80.78% id in 307 aa, and to Bacteroides thetaiotaomicron arabinan endo-1,5-alpha-L-arabinosidase A precursor BT2900 SWALL:AAO78006 (EMBL:AE016938) (325 aa) fasta scores: E(): 2.4e-100, 70.09% id in 321 aa; putative exported endo-arabinase 341713 3285992 BF9343_0288 Bacteroides fragilis NCTC 9343 putative exported endo-arabinase YP_210029.1 340736 D 272559 CDS YP_210030.1 60679886 3288432 342750..343868 1 NC_003228.3 Similar to Bacillus circulans alpha-1,6-mannanase precursor AmaN6 SWALL:Q9Z4P9 (EMBL:AB024331) (589 aa) fasta scores: E(): 8.1e-39, 34.64% id in 381 aa but truncated at the C-terminus and to entire protein of Bacteroides thetaiotaomicron alpha-1,6-mannanase BT3524 SWALL:AAO78630 (EMBL:AE016941) (420 aa) fasta scores: E(): 1.7e-27, 44.86% id in 419 aa, and to entire protein of Bacteroides thetaiotaomicron alpha-1,6-mannanase BT3521 SWALL:AAO78627 (EMBL:AE016941) (429 aa) fasta scores: E(): 4.5e-25, 39.9% id in 401 aa; putative exported glycosylhydrolase 343868 3288432 BF9343_0289 Bacteroides fragilis NCTC 9343 putative exported glycosylhydrolase YP_210030.1 342750 D 272559 CDS YP_210031.1 60679887 3288395 343897..346059 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3525 SWALL:AAO78631 (EMBL:AE016941) (721 aa) fasta scores: E(): 0, 81.02% id in 722 aa; hypothetical protein 346059 3288395 BF9343_0290 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210031.1 343897 D 272559 CDS YP_210032.1 60679888 3286033 346053..348566 1 NC_003228.3 Similar to Aspergillus oryzae glutaminase A GtaA SWALL:Q9UVX9 (EMBL:AB029552) (690 aa) fasta scores: E(): 3.8e-40, 30.36% id in 606 aa, and to Bacteroides thetaiotaomicron glutaminase BT3526 SWALL:AAO78632 (EMBL:AE016941) (825 aa) fasta scores: E(): 0, 79.29% id in 826 aa, and to Bacteroides thetaiotaomicron glutaminase A BT3477 SWALL:AAO78583 (EMBL:AE016940) (840 aa) fasta scores: E(): 6e-108, 49.34% id in 837 aa; putative exported glutaminase 348566 3286033 BF9343_0291 Bacteroides fragilis NCTC 9343 putative exported glutaminase YP_210032.1 346053 D 272559 CDS YP_210033.1 60679889 3288393 348685..350970 1 NC_003228.3 Similar to Bacillus sp. M-90 alpha-1,2-mannosidase precursor AmaN2 SWALL:Q9WXI8 (EMBL:AB025248) (1976 aa) fasta scores: E(): 1.5e-32, 31.44% id in 757 aa, and to Bacteroides thetaiotaomicron alpha-1,2-mannosidase BT3527 SWALL:Q8A1Y1 (EMBL:AE016941) (763 aa) fasta scores: E(): 0, 86.33% id in 761 aa, and to Bacteroides thetaiotaomicron putative alpha-1,2-mannosidase BT3990 SWALL:Q8A0N1 (EMBL:AE016943) (755 aa) fasta scores: E(): 0, 72.2% id in 759 aa; putative exported alpha-1,2-mannosidase 350970 3288393 BF9343_0292 Bacteroides fragilis NCTC 9343 putative exported alpha-1,2-mannosidase YP_210033.1 348685 D 272559 CDS YP_210034.1 60679890 3288383 351014..352480 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3528 SWALL:AAO78634 (EMBL:AE016941) (487 aa) fasta scores: E(): 2.4e-176, 85.97% id in 485 aa, and to Xanthomonas axonopodis hypothetical protein Xac3082 XAC3082 SWALL:Q8PI16 (EMBL:AE011951) (487 aa) fasta scores: E(): 4.9e-100, 50.72% id in 483 aa; hypothetical protein 352480 3288383 BF9343_0293 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210034.1 351014 D 272559 CDS YP_210035.1 60679891 3286038 352668..353789 1 NC_003228.3 Similar to Sus scrofa aldose 1-epimerase Mut SWALL:Q9GKX6 (EMBL:AB044390) (342 aa) fasta scores: E(): 6.9e-47, 43.21% id in 324 aa, and to Bacteroides thetaiotaomicron aldose 1-epimerase precursor BT3532 SWALL:AAO78638 (EMBL:AE016941) (377 aa) fasta scores: E(): 2.2e-130, 86.21% id in 370 aa, and to Escherichia coli, and Shigella flexneri aldose 1-epimerase GalM or B0756 or SF0548 SWALL:GALM_ECOLI (SWALL:P40681) (346 aa) fasta scores: E(): 9.4e-41, 39.76% id in 337 aa; putative aldose 1-epimerase 353789 3286038 BF9343_0294 Bacteroides fragilis NCTC 9343 putative aldose 1-epimerase YP_210035.1 352668 D 272559 CDS YP_210036.1 60679892 3285991 353893..355113 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative transport protein BT4459 SWALL:AAO79564 (EMBL:AE016945) (390 aa) fasta scores: E(): 1.3e-48, 36.52% id in 397 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative membrane-associated protein BT2780 SWALL:AAO77886 (EMBL:AE016937) (395 aa) fasta scores: E(): 1.5e-46, 35.84% id in 399 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1547 SWALL:AAO76654 (EMBL:AE016932) (391 aa) fasta scores: E(): 2.7e-40, 32.39% id in 389 aa, and to Xanthomonas campestris transport protein YxaH or XCC2581 SWALL:Q8P7N0 (EMBL:AE012370) (414 aa) fasta scores: E(): 8.5e-29, 32.16% id in 429 aa; putative transmembrane protein 355113 3285991 BF9343_0295 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210036.1 353893 D 272559 CDS YP_210037.1 60679893 3288420 355163..358156 1 NC_003228.3 C-terminus is similar to Streptomyces sioyaensis endo-1,3-beta-glucanase SWALL:Q9L816 (EMBL:AF217415) (478 aa) fasta scores: E(): 3.8e-06, 35% id in 140 aa, and the C-terminus of BF0302 is similar to the C-terminus of Ralstonia solanacearum putative transmembrane protein RSP0881 or RS01652 SWALL:Q8XRH3 (EMBL:AL646081) (767 aa) fasta scores: E(): 7.4e-16, 36.15% id in 213 aa, and the C-terminus of BF0302 is similar to the C-terminus of Bacteroides thetaiotaomicron endo-1,4-beta-xylanase D precursor BT3675 SWALL:AAO78780 (EMBL:AE016941) (333 aa) fasta scores: E(): 2.7e-15, 27.95% id in 347 aa; putative exported carbohydrate-binding protein 358156 3288420 BF9343_0296 Bacteroides fragilis NCTC 9343 putative exported carbohydrate-binding protein YP_210037.1 355163 D 272559 CDS YP_210038.1 60679894 3288403 358188..359156 1 NC_003228.3 Similar to Butyrivibrio fibrisolvens xylosidase/arabinosidase [includes: beta-xylosidase (EC 3.2.1.37) (1,4-beta-d-xylan xylohydrolase) (xylan 1,4-beta-xylosidase); alpha-l- arabinofuranosidase (EC 3.2.1.55) (arabinosidase)] XylB SWALL:XYLB_BUTFI (SWALL:P45982) (517 aa) fasta scores: E(): 9.2e-10, 29.41% id in 289 aa, and to Bacteroides thetaiotaomicron endo-1,4-beta-xylanase D precursor BT2898 SWALL:AAO78004 (EMBL:AE016938) (327 aa) fasta scores: E(): 6.6e-52, 49.24% id in 266 aa; putative exported glycosylhydrolase 359156 3288403 BF9343_0297 Bacteroides fragilis NCTC 9343 putative exported glycosylhydrolase YP_210038.1 358188 D 272559 CDS YP_210039.1 60679895 3288390 359630..359923 1 NC_003228.3 no significant database matches; hypothetical protein 359923 3288390 BF9343_0298 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210039.1 359630 D 272559 CDS YP_210040.1 60679896 3288417 359929..360993 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 1.8e-05, 26.44% id in 276 aa; conserved hypothetical lipoprotein 360993 3288417 BF9343_0299 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_210040.1 359929 D 272559 CDS YP_210041.1 60679897 3285859 361079..361501 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron endo-1,4-beta-xylanase D precursor BT2898 SWALL:AAO78004 (EMBL:AE016938) (327 aa) fasta scores: E(): 0.00028, 50% id in 48 aa; hypothetical protein 361501 3285859 BF9343_0300 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210041.1 361079 D 272559 CDS YP_210042.1 60679898 3285895 361899..362135 1 NC_003228.3 no significant database matches; hypothetical protein 362135 3285895 BF9343_0301 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210042.1 361899 D 272559 CDS YP_210043.1 60679899 3288327 362322..363353 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT0659 SWALL:AAO75766 (EMBL:AE016928) (345 aa) fasta scores: E(): 0.066, 23.51% id in 336 aa; hypothetical lipoprotein 363353 3288327 BF9343_0302 Bacteroides fragilis NCTC 9343 hypothetical lipoprotein YP_210043.1 362322 D 272559 CDS YP_210044.1 60679900 3288745 363368..363499 1 NC_003228.3 no significant database matches; hypothetical protein 363499 3288745 BF9343_0303 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210044.1 363368 D 272559 CDS YP_210045.1 60679901 3288706 complement(363588..364742) 1 NC_003228.3 Similar to Agrobacterium tumefaciens protein 2 in PicA locus SWALL:PIC2_AGRTU (SWALL:P29113) (191 aa) fasta scores: E(): 4.4e-11, 35.75% id in 193 aa, and to Bacteroides thetaiotaomicron acyltransferase BT2367 SWALL:AAO77474 (EMBL:AE016935) (382 aa) fasta scores: E(): 2e-108, 67.27% id in 385 aa, and to Bradyrhizobium japonicum Blr2157 protein SWALL:BAC47422 (EMBL:AP005942) (405 aa) fasta scores: E(): 3.2e-21, 30.89% id in 369 aa; putative transmembrane acyltransferase protein 364742 3288706 BF9343_0304 Bacteroides fragilis NCTC 9343 putative transmembrane acyltransferase protein YP_210045.1 363588 R 272559 CDS YP_210046.1 60679902 3288738 complement(364839..365402) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative regulatory protein with a cAMP-binding domain BT1545 SWALL:Q8A7H9 (EMBL:AE016932) (187 aa) fasta scores: E(): 1.3e-30, 47.31% id in 186 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2366 SWALL:Q8A576 (EMBL:AE016935) (187 aa) fasta scores: E(): 2.5e-26, 43.31% id in 187 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1389 SWALL:Q8A7Y5 (EMBL:AE016931) (187 aa) fasta scores: E(): 1.4e-15, 31.52% id in 184 aa, and to Bacteroides thetaiotaomicron putative cAMP-binding domain, regulatory protein BT2102 SWALL:Q8A5Y4 (EMBL:AE016934) (187 aa) fasta scores: E(): 1e-12, 32.08% id in 187 aa; putative cAMP-binding DNA-binding protein 365402 3288738 BF9343_0305 Bacteroides fragilis NCTC 9343 putative cAMP-binding DNA-binding protein YP_210046.1 364839 R 272559 CDS YP_210047.1 60679903 3286042 365705..367087 1 NC_003228.3 no significant database matches; hypothetical protein 367087 3286042 BF9343_0306 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210047.1 365705 D 272559 CDS YP_210048.1 60679904 3286024 complement(367248..368225) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transcriptional regulator BT2096 SWALL:AAO77203 (EMBL:AE016934) (325 aa) fasta scores: E(): 7.6e-90, 73.23% id in 325 aa, and to Bacteroides thetaiotaomicron sensor FucR or BT1272 SWALL:Q9RQ14 (EMBL:AF137263) (331 aa) fasta scores: E(): 7.8e-34, 33.95% id in 321 aa; putative transcriptional regulator 368225 3286024 BF9343_0307 Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_210048.1 367248 R 272559 CDS YP_210049.1 60679905 3288733 368437..370524 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2097 SWALL:AAO77204 (EMBL:AE016934) (687 aa) fasta scores: E(): 1.6e-184, 61.93% id in 683 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3674 SWALL:AAO78779 (EMBL:AE016941) (668 aa) fasta scores: E(): 1.1e-54, 35.89% id in 677 aa, and to Rhizobium loti hypothetical protein Mlr2247 SWALL:Q98IU3 (EMBL:AP002999) (662 aa) fasta scores: E(): 1.5e-34, 32.48% id in 711 aa; hypothetical protein 370524 3288733 BF9343_0308 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210049.1 368437 D 272559 CDS YP_210050.1 60679906 3288727 370526..372952 1 NC_003228.3 C-terminus is similar to Bacteroides ovatus arabinosidase AsdI SWALL:Q59218 (EMBL:U15178) (660 aa) fasta scores: E(): 2.5e-08, 24% id in 575 aa, and the C-terminus is similar to Aspergillus niger alpha-L-arabinofuranosidase A precursor AbfA SWALL:ABFA_ASPNG (SWALL:P42254) (628 aa) fasta scores: E(): 1.2e-07, 24.37% id in 599 aa, and the C-terminus is similar to Bacteroides thetaiotaomicron alpha-L-arabinofuranosidase A precursor BT0368 SWALL:AAO75475 (EMBL:AE016927) (660 aa) fasta scores: E(): 1.2e-07, 25.04% id in 575 aa; putative exported carbohydrate-binding protein 372952 3288727 BF9343_0309 Bacteroides fragilis NCTC 9343 putative exported carbohydrate-binding protein YP_210050.1 370526 D 272559 CDS YP_210051.1 60679907 3288731 372962..375601 1 NC_003228.3 Similar to Bacillus sp. GL1 rhamnosidase A RhaA SWALL:Q93RE8 (EMBL:AB046705) (886 aa) fasta scores: E(): 1.1e-63, 32.91% id in 878 aa, and to Bacteroides thetaiotaomicron alpha-rhamnosidase BT2524 SWALL:AAO77631 (EMBL:AE016936) (881 aa) fasta scores: E(): 2.4e-140, 38.77% id in 882 aa, and to Streptomyces coelicolor hypothetical protein SCO0488 or SCF34.07 SWALL:Q9RK18 (EMBL:AL939105) (1138 aa) fasta scores: E(): 4.3e-84, 34.05% id in 781 aa; putative exported rhamnosidase protein 375601 3288731 BF9343_0310 Bacteroides fragilis NCTC 9343 putative exported rhamnosidase protein YP_210051.1 372962 D 272559 CDS YP_210052.1 60679908 3288690 complement(375781..376842) 1 NC_003228.3 Similar to Escherichia coli acetylornithine deacetylase ArgE or B3957 SWALL:ARGE_ECOLI (SWALL:P23908) (383 aa) fasta scores: E(): 5e-10, 25.2% id in 373 aa, and to Bacteroides thetaiotaomicron acetylornithine deacetylase BT3549 SWALL:AAO78655 (EMBL:AE016941) (355 aa) fasta scores: E(): 2.2e-126, 86.81% id in 349 aa, and to Mycobacterium tuberculosis DapE or Rv1202 or MTCI364.14 or mt1240 SWALL:O05303 (EMBL:Z93777) (354 aa) fasta scores: E(): 1.1e-17, 27.64% id in 369 aa; putative peptidase/deacetylase 376842 3288690 BF9343_0311 Bacteroides fragilis NCTC 9343 putative peptidase/deacetylase YP_210052.1 375781 R 272559 CDS YP_210053.1 60679909 3286076 377031..378836 1 NC_003228.3 Similar to Arabidopsis thaliana long chain acyl-CoA synthetase 7 LacS7 SWALL:Q8LKS5 (EMBL:AF503757) (700 aa) fasta scores: E(): 7.3e-40, 29.12% id in 625 aa, and to Bacteroides thetaiotaomicron putative long-chain-fatty-acid--CoA ligase BT3550 SWALL:AAO78656 (EMBL:AE016941) (601 aa) fasta scores: E(): 2.6e-207, 87.52% id in 601 aa, and to Vibrio parahaemolyticus putative long-chain-fatty-acid-CoA ligase VP0351 SWALL:BAC58614 (EMBL:AP005074) (602 aa) fasta scores: E(): 2.7e-91, 41.3% id in 598 aa, and to Vibrio cholerae long-chain-fatty-acid--CoA ligase, putative VC2484 SWALL:Q9KP89 (EMBL:AE004318) (601 aa) fasta scores: E(): 3.5e-91, 41.09% id in 601 aa; putative AMP binding long chain acyl-CoA synthetase 378836 3286076 BF9343_0312 Bacteroides fragilis NCTC 9343 putative AMP binding long chain acyl-CoA synthetase YP_210053.1 377031 D 272559 CDS YP_210054.1 60679910 3286011 379054..380013 1 NC_003228.3 Similar to Escherichia coli peptide chain release factor 2 PrfB or SupK or B2891 SWALL:RF2_ECOLI (SWALL:P07012) (365 aa) fasta scores: E(): 2.4e-45, 46.6% id in 309 aa, and to Bacteroides thetaiotaomicron peptide chain release factor Rf-2 BT3552 SWALL:AAO78658 (EMBL:AE016941) (319 aa) fasta scores: E(): 1.7e-112, 93.41% id in 319 aa, and to Lactococcus lactis peptide chain release factor 2 PrfB or ll0971 SWALL:RF2_LACLA (SWALL:Q9CGX1) (365 aa) fasta scores: E(): 2.4e-45, 45.45% id in 308 aa. CDS is truncated at the N-terminus; putative peptide chain release factor 380013 3286011 BF9343_0313 Bacteroides fragilis NCTC 9343 putative peptide chain release factor YP_210054.1 379054 D 272559 CDS YP_210055.1 60679911 3288675 380166..380300 1 NC_003228.3 no significant database matches; hypothetical membrane protein 380300 3288675 BF9343_0314 Bacteroides fragilis NCTC 9343 hypothetical membrane protein YP_210055.1 380166 D 272559 CDS YP_210056.1 60679912 3288734 380417..381736 1 NC_003228.3 Similar to Caulobacter crescentus hypothetical protein CC0911 SWALL:Y911_CAUCR (SWALL:P33976) (493 aa) fasta scores: E(): 1.9e-17, 27.19% id in 364 aa, and to Xanthomonas axonopodis polyphosphate-selective porin O OprO or XAC3472 SWALL:Q8PGZ0 (EMBL:AE011995) (390 aa) fasta scores: E(): 1.6e-12, 27.96% id in 354 aa, and to Xylella fastidiosa polyphosphate-selective porin O OprO or PD0270 SWALL:AAO28156 (EMBL:AE012554) (389 aa) fasta scores: E(): 2.9e-12, 26.46% id in 359 aa; hypothetical protein 381736 3288734 BF9343_0315 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210056.1 380417 D 272559 CDS YP_210057.1 60679913 3288691 381744..382214 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3554 SWALL:AAO78660 (EMBL:AE016941) (155 aa) fasta scores: E(): 4e-51, 86.45% id in 155 aa, and to Anabaena sp. hypothetical protein ALL4694 SWALL:Q8YN76 (EMBL:AP003597) (153 aa) fasta scores: E(): 7.3e-22, 48.07% id in 156 aa, and to Xylella fastidiosa hypothetical protein Xf2357 SWALL:Q9PAY8 (EMBL:AE004045) (165 aa) fasta scores: E(): 1.8e-20, 46.62% id in 163 aa; hypothetical protein 382214 3288691 BF9343_0316 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210057.1 381744 D 272559 CDS YP_210058.1 60679914 3286044 382271..383566 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3555 SWALL:AAO78661 (EMBL:AE016941) (430 aa) fasta scores: E(): 1.9e-145, 86.04% id in 430 aa, and to Vibrio parahaemolyticus hypothetical protein vp2084 SWALL:BAC60347 (EMBL:AP005080) (424 aa) fasta scores: E(): 4.3e-27, 27.08% id in 432 aa, and to Vibrio vulnificus predicted membrane protein VV20031 SWALL:Q8D7W5 (EMBL:AE016808) (423 aa) fasta scores: E(): 7.4e-24, 25.72% id in 381 aa; putative transmembrane protein 383566 3286044 BF9343_0317 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210058.1 382271 D 272559 CDS YP_210059.1 60679915 3288707 383737..386313 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative TonB-dependent receptor BT3565 SWALL:AAO78671 (EMBL:AE016941) (853 aa) fasta scores: E(): 0, 72% id in 861 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4568 SWALL:AAO79673 (EMBL:AE016945) (811 aa) fasta scores: E(): 4.9e-25, 23.22% id in 775 aa, and to Cytophaga johnsonae hypothetical 65.5 kDa protein SWALL:O30490 (EMBL:AF007381) (578 aa) fasta scores: E(): 1.1e-17, 24.5% id in 551 aa; putative TonB-dependent receptor exported protein 386313 3288707 BF9343_0318 Bacteroides fragilis NCTC 9343 putative TonB-dependent receptor exported protein YP_210059.1 383737 D 272559 CDS YP_210060.1 60679916 3288730 complement(386594..387814) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2916 SWALL:AAO78022 (EMBL:AE016938) (407 aa) fasta scores: E(): 4.1e-84, 50.97% id in 410 aa, and to Thermotoga maritima hypothetical protein Tm1061 SWALL:Q9X0F1 (EMBL:AE001766) (387 aa) fasta scores: E(): 6.1e-69, 46.89% id in 386 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3021 SWALL:AAO78127 (EMBL:AE016938) (450 aa) fasta scores: E(): 4.5e-64, 42.82% id in 418 aa; hypothetical protein 387814 3288730 BF9343_0319 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210060.1 386594 R 272559 CDS YP_210061.1 60679917 3286062 complement(387814..389901) 1 NC_003228.3 Similar to Thermoanaerobacter mathranii beta-galactosidase Lac SWALL:Q93IM1 (EMBL:AJ316558) (751 aa) fasta scores: E(): 5.2e-31, 26.92% id in 702 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT0757 SWALL:AAO75864 (EMBL:AE016929) (682 aa) fasta scores: E(): 2.2e-207, 72.25% id in 656 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT2969 SWALL:AAO78075 (EMBL:AE016938) (702 aa) fasta scores: E(): 1.7e-81, 37.62% id in 699 aa; putative beta-galactosidase 389901 3286062 BF9343_0320 Bacteroides fragilis NCTC 9343 putative beta-galactosidase YP_210061.1 387814 R 272559 CDS YP_210062.1 60679918 3288726 complement(389958..391493) 1 NC_003228.3 Similar to Porphyromonas gingivalis beta-hexosaminidase precursor NahA SWALL:HEXA_PORGI (SWALL:P49008) (777 aa) fasta scores: E(): 1.1e-50, 36.4% id in 467 aa, and to Bacteroides thetaiotaomicron beta-hexosaminidase precursor BT3598 SWALL:AAO78703 (EMBL:AE016941) (537 aa) fasta scores: E(): 8e-90, 49.53% id in 428 aa, and to Bacteroides forsythus HexA SWALL:AAO33832 (EMBL:AY184490) (782 aa) fasta scores: E(): 4.6e-53, 39.05% id in 443 aa; putative exported beta-hexosaminidase 391493 3288726 BF9343_0321 Bacteroides fragilis NCTC 9343 putative exported beta-hexosaminidase YP_210062.1 389958 R 272559 CDS YP_210063.1 60679919 3288551 complement(391524..392435) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3023 SWALL:AAO78129 (EMBL:AE016938) (305 aa) fasta scores: E(): 2.5e-76, 64.59% id in 305 aa, and to Pseudomonas putida hypothetical protein PP0968 SWALL:AAN66593 (EMBL:AE016777) (413 aa) fasta scores: E(): 9.1e-11, 25.15% id in 318 aa, and to Lactobacillus plantarum cell surface protein precursor LP_3001 SWALL:CAD65183 (EMBL:AL935260) (1074 aa) fasta scores: E(): 3e-07, 22.5% id in 240 aa; hypothetical protein 392435 3288551 BF9343_0322 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210063.1 391524 R 272559 CDS YP_210064.1 60679920 3288580 complement(392456..393667) 1 NC_003228.3 Similar to Bacillus sp. GL1 unsaturated glucuronyl hydrolase Ugl SWALL:Q9RC92 (EMBL:AB019619) (377 aa) fasta scores: E(): 2.8e-28, 33.33% id in 375 aa, and to Bacteroides thetaiotaomicron putative unsaturated glucuronyl hydrolase BT3348 SWALL:AAO78454 (EMBL:AE016940) (400 aa) fasta scores: E(): 7.1e-106, 63.11% id in 404 aa, and to Bacteroides thetaiotaomicron unsaturated glucuronylhydrolase BT2913 SWALL:AAO78019 (EMBL:AE016938) (402 aa) fasta scores: E(): 1.7e-67, 46.56% id in 393 aa; putative exported hydrolase 393667 3288580 BF9343_0323 Bacteroides fragilis NCTC 9343 putative exported hydrolase YP_210064.1 392456 R 272559 CDS YP_210065.1 60679921 3286092 complement(393671..395578) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4410 SWALL:AAO79515 (EMBL:AE016945) (644 aa) fasta scores: E(): 1.8e-164, 57.96% id in 640 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2963 SWALL:AAO78069 (EMBL:AE016938) (980 aa) fasta scores: E(): 3e-18, 21.26% id in 536 aa; hypothetical protein 395578 3286092 BF9343_0324 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210065.1 393671 R 272559 CDS YP_210066.1 60679922 3288591 complement(395930..397777) 1 NC_003228.3 Similar to Bacteroides fragilis putative outer membrane protein FrrH SWALL:Q8VTA8 (EMBL:AF329100) (495 aa) fasta scores: E(): 1.6e-05, 23.94% id in 355 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative outer membrane protein BT3953 SWALL:AAO79058 (EMBL:AE016942) (631 aa) fasta scores: E(): 2.2e-13, 24.05% id in 661 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0191 SWALL:AAO75298 (EMBL:AE016926) (463 aa) fasta scores: E(): 1.6e-10, 25.61% id in 285 aa; hypothetical protein 397777 3288591 BF9343_0325 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210066.1 395930 R 272559 CDS YP_210067.1 60679923 3288564 complement(397795..401148) 1 NC_003228.3 Similar to Bacteroides fragilis outer membrane receptor FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 4.8e-43, 32.65% id in 1139 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0754 SWALL:AAO75861 (EMBL:AE016929) (1138 aa) fasta scores: E(): 5e-84, 32.22% id in 1145 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2196 SWALL:AAO77303 (EMBL:AE016935) (1120 aa) fasta scores: E(): 7.9e-73, 32.02% id in 1096 aa; hypothetical protein 401148 3288564 BF9343_0326 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210067.1 397795 R 272559 CDS YP_210068.1 60679924 3286060 401513..403162 1 NC_003228.3 Similar to C-terminus of Pseudomonas putida bZIP histidine kinase TobS SWALL:Q9EVJ0 (EMBL:AF180147) (978 aa) fasta scores: E(): 1.4e-35, 31.26% id in 419 aa, and to C-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT3334 SWALL:AAO78440 (EMBL:AE016940) (1354 aa) fasta scores: E(): 2.8e-93, 47.58% id in 559 aa, and to C-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT2971 SWALL:AAO78077 (EMBL:AE016938) (1346 aa) fasta scores: E(): 1.3e-88, 47.98% id in 546 aa. Note: CDS is present on invertible region P which when inverted from this conformation may form an entire sensor histidine kinase gene; putative two-component system sensor histidine kinase 403162 3286060 BF9343_0327 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase YP_210068.1 401513 D 272559 CDS YP_210069.1 60679925 3286073 complement(403256..405694) 1 NC_003228.3 Similar to N-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT0958 SWALL:AAO76065 (EMBL:AE016929) (1329 aa) fasta scores: E(): 6.4e-17, 22.23% id in 805 aa, and to N-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT0981 SWALL:AAO76088 (EMBL:AE016929) (1472 aa) fasta scores: E(): 4.8e-14, 23.02% id in 808 aa, and to N-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT3786 SWALL:AAO78891 (EMBL:AE016942) (1345 aa) fasta scores: E(): 5.9e-14, 22.36% id in 845 aa. CDS is truncated at the C-terminus and may be able to form an intact protein on inversion of the adjacent invertible region P; putative two-component sensor histidine kinase 405694 3286073 BF9343_0328 Bacteroides fragilis NCTC 9343 putative two-component sensor histidine kinase YP_210069.1 403256 R 272559 CDS YP_210070.1 60679926 3288598 complement(405834..406577) 1 NC_003228.3 Similar to Xanthomonas axonopodis hypothetical protein Xac0836 SWALL:Q8PP52 (EMBL:AE011715) (214 aa) fasta scores: E(): 1.2e-15, 29.79% id in 198 aa, and to Xanthomonas campestris hypothetical protein Xcc0781 SWALL:Q8PCF3 (EMBL:AE012178) (233 aa) fasta scores: E(): 3.5e-14, 27.23% id in 235 aa, and to Agrobacterium tumefaciens hypothetical protein atu5455 or agr_pat_668 SWALL:Q8UJM1 (EMBL:AE008966) (217 aa) fasta scores: E(): 1.1e-11, 28.64% id in 192 aa; hypothetical protein 406577 3288598 BF9343_0329 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210070.1 405834 R 272559 CDS YP_210071.1 60679927 3288597 complement(406578..407933) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3566 SWALL:AAO78672 (EMBL:AE016941) (454 aa) fasta scores: E(): 2e-160, 82.39% id in 443 aa, and to Agrobacterium tumefaciens hypothetical protein atu3054 or agr_l_3503 SWALL:Q8UBG2 (EMBL:AE009236) (425 aa) fasta scores: E(): 8.3e-60, 40.09% id in 409 aa, and to Xylella fastidiosa hypothetical protein Xf2449 SWALL:Q9PAP6 (EMBL:AE004053) (544 aa) fasta scores: E(): 9.3e-22, 30.79% id in 513 aa; hypothetical protein 407933 3288597 BF9343_0330 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210071.1 406578 R 272559 CDS YP_210072.1 60679928 3288615 complement(408099..410399) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis beta-glucosidase BlgX (BF4170) SWALL:O31356 (EMBL:AF006658) (764 aa) fasta scores: E(): 0, 80.74% id in 748 aa, and to Bacteroides thetaiotaomicron periplasmic beta-glucosidase precursor BT3567 SWALL:Q8A1U1 (EMBL:AE016941) (771 aa) fasta scores: E(): 0, 81.58% id in 771 aa, and to Flavobacterium meningosepticum beta-glucosidase Bgl SWALL:O30713 (EMBL:AF015915) (726 aa) fasta scores: E(): 2.4e-182, 64.47% id in 729 aa. Note:; putative exported beta-glucosidase 410399 3288615 BF9343_0331 Bacteroides fragilis NCTC 9343 putative exported beta-glucosidase YP_210072.1 408099 R 272559 CDS YP_210073.1 60679929 3288567 complement(410502..412022) 1 NC_003228.3 Similar to Bacteroides fragilis fragilis regulatory region FrrH SWALL:Q8VTA8 (EMBL:AF329100) (495 aa) fasta scores: E(): 1.6e-06, 25.53% id in 419 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3568 SWALL:AAO78674 (EMBL:AE016941) (509 aa) fasta scores: E(): 2.3e-159, 72.69% id in 509 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3089 SWALL:AAO78195 (EMBL:AE016938) (496 aa) fasta scores: E(): 4.2e-27, 30% id in 520 aa; hypothetical protein 412022 3288567 BF9343_0332 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210073.1 410502 R 272559 CDS YP_210074.1 60679930 3286074 complement(412034..415084) 1 NC_003228.3 Similar to Bacteroides CACcae tonB-linked outer membrane protein OmpW SWALL:Q93FV1 (EMBL:AF305878) (947 aa) fasta scores: E(): 0, 83.42% id in 947 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3569 SWALL:AAO78675 (EMBL:AE016941) (1021 aa) fasta scores: E(): 0, 82.67% id in 1016 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4724 SWALL:AAO79829 (EMBL:AE016946) (1139 aa) fasta scores: E(): 4.4e-69, 29.77% id in 1068 aa; putative TonB-dependent outer membrane exported protein 415084 3286074 BF9343_0333 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane exported protein YP_210074.1 412034 R 272559 CDS YP_210075.1 60679931 3286078 415615..415926 1 NC_003228.3 no significant database matches; hypothetical protein 415926 3286078 BF9343_0334 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210075.1 415615 D 272559 CDS YP_210076.1 60679932 3288529 complement(416057..416350) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4733 SWALL:AAO79838 (EMBL:AE016946) (101 aa) fasta scores: E(): 0.0043, 36.25% id in 80 aa, and to Acinetobacter lwoffii Cro-like protein Cro SWALL:Q8GMU5 (EMBL:AJ250245) (100 aa) fasta scores: E(): 0.045, 28.23% id in 85 aa; putative DNA-binding protein 416350 3288529 BF9343_0335 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_210076.1 416057 R 272559 CDS YP_210077.1 60679933 3288492 complement(416350..416634) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4732 SWALL:AAO79837 (EMBL:AE016946) (110 aa) fasta scores: E(): 7.3e-12, 48.31% id in 89 aa, and to Vibrio cholerae hypothetical protein s045 SWALL:Q8KQX9 (EMBL:AY055428) (107 aa) fasta scores: E(): 0.00032, 37.34% id in 83 aa; hypothetical protein 416634 3288492 BF9343_0336 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210077.1 416350 R 272559 CDS YP_210078.1 60679934 3288606 417101..417817 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative DNA-binding protein p5482_33 SWALL:Q8ABW5 (EMBL:AY171301) (276 aa) fasta scores: E(): 2.2e-33, 56.89% id in 232 aa, and to Methanosarcina mazei hypothetical protein Mm2203 MM2203 SWALL:Q8PUX5 (EMBL:AE013460) (344 aa) fasta scores: E(): 8.1e-23, 41.48% id in 229 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3040 SWALL:Q8A3B4 (EMBL:AE016938) (338 aa) fasta scores: E(): 4.1e-22, 43.52% id in 193 aa. Possible alternative start site at codon 6; hypothetical protein 417817 3288606 BF9343_0337 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210078.1 417101 D 272559 CDS YP_210079.1 60679935 3288540 complement(417879..418103) 1 NC_003228.3 no significant database matches; hypothetical protein 418103 3288540 BF9343_0338 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210079.1 417879 R 272559 CDS YP_210080.1 60679936 3286072 418625..418975 1 NC_003228.3 no significant database matches; hypothetical protein 418975 3286072 BF9343_0339 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210080.1 418625 D 272559 CDS YP_210081.1 60679937 3286120 420462..423521 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 2.7e-74, 31.53% id in 1059 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2364 SWALL:AAO77471 (EMBL:AE016935) (1025 aa) fasta scores: E(): 0, 73.76% id in 1014 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3103 SWALL:AAO78209 (EMBL:AE016939) (1061 aa) fasta scores: E(): 2.8e-72, 30.74% id in 1067 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1440 SWALL:AAO76547 (EMBL:AE016931) (1042 aa) fasta scores: E(): 3e-60, 32.47% id in 1081 aa, and to Bacteroides fragilis FrrG frrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 2.7e-54, 29.34% id in 1053 aa; putative TonB dependent outer membrane exported protein 423521 3286120 BF9343_0340 Bacteroides fragilis NCTC 9343 putative TonB dependent outer membrane exported protein YP_210081.1 420462 D 272559 CDS YP_210082.1 60679938 3288531 423550..425037 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2365 SWALL:AAO77472 (EMBL:AE016935) (497 aa) fasta scores: E(): 1.4e-113, 58.4% id in 500 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2269 SWALL:AAO77376 (EMBL:AE016935) (469 aa) fasta scores: E(): 3.1e-22, 33.66% id in 505 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3311 SWALL:AAO78417 (EMBL:AE016940) (506 aa) fasta scores: E(): 3.1e-12, 24.13% id in 522 aa; putative outer membrane protein 425037 3288531 BF9343_0341 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210082.1 423550 D 272559 CDS YP_210083.1 60679939 3288329 complement(425193..426224) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3577 SWALL:AAO78683 (EMBL:AE016941) (340 aa) fasta scores: E(): 3.4e-92, 65.21% id in 345 aa, and to Caulobacter crescentus hypothetical protein Cc2028 SWALL:Q9A6Q6 (EMBL:AE005876) (462 aa) fasta scores: E(): 1.8e-09, 25.81% id in 306 aa; hypothetical protein 426224 3288329 BF9343_0342 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210083.1 425193 R 272559 CDS YP_210084.1 60679940 3288575 complement(426237..427106) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3578 SWALL:AAO78684 (EMBL:AE016941) (286 aa) fasta scores: E(): 3.9e-92, 82.75% id in 261 aa; hypothetical protein 427106 3288575 BF9343_0343 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210084.1 426237 R 272559 CDS YP_210085.1 60679941 3288506 complement(427131..429686) 1 NC_003228.3 Similar to Borrelia burgdorferi topoisomerase IV subunit A ParC or BB0035 SWALL:PARC_BORBU (SWALL:O51066) (626 aa) fasta scores: E(): 2.8e-83, 39.08% id in 632 aa, and to Bacteroides thetaiotaomicron topoisomerase IV subunit A BT3579 SWALL:Q8A1S9 (EMBL:AE016941) (850 aa) fasta scores: E(): 0, 88.13% id in 851 aa, and to Chlamydophila caviae topoisomerase, subunit A, putative CCa00026 SWALL:AAP04778 (EMBL:AE016994) (479 aa) fasta scores: E(): 3.3e-63, 42.29% id in 461 aa; putative topoisomerase 429686 3288506 BF9343_0344 Bacteroides fragilis NCTC 9343 putative topoisomerase YP_210085.1 427131 R 272559 CDS YP_210086.1 60679942 3287923 429964..431505 1 NC_003228.3 Similar to Leptospira interrogans glycyl-tRNA synthetase GlyS or La1388 SWALL:Q8F6C0 (EMBL:AE011318) (464 aa) fasta scores: E(): 2.7e-70, 47.7% id in 501 aa, and to Bacteroides thetaiotaomicron glycyl-tRNA synthetase BT3611 SWALL:AAO78716 (EMBL:AE016941) (513 aa) fasta scores: E(): 2.9e-201, 95.9% id in 513 aa, and to Chlorobium tepidum glycyl-tRNA synthetase GlyS or CT2255 SWALL:Q8KAB1 (EMBL:AE012970) (470 aa) fasta scores: E(): 9.2e-76, 53.02% id in 496 aa; putative glycyl-tRNA synthetase 431505 glyS 3287923 glyS Bacteroides fragilis NCTC 9343 putative glycyl-tRNA synthetase YP_210086.1 429964 D 272559 CDS YP_210087.1 60679943 3286144 431517..432068 1 NC_003228.3 Limited similarity to C-terminus of Escherichia coli, and Shigella flexneri fkbp-type 22 kDa peptidyl-prolyl cis-trans isomerase FklB or B4207 or SF4279 SWALL:FKBB_ECOLI (SWALL:P39311) (205 aa) fasta scores: E(): 0.00019, 41.28% id in 109 aa, and to Bacteroides thetaiotaomicron putative fkbp-type peptidyl-prolyl cis-trans isomerase FkpA BT3612 SWALL:AAO78717 (EMBL:AE016941) (196 aa) fasta scores: E(): 2.6e-29, 49.2% id in 189 aa, and to Pseudomonas putida peptidyl-prolyl cis-trans isomerase, fkbp-type fklb-1 or PP0684 SWALL:AAN66309 (EMBL:AE016776) (205 aa) fasta scores: E(): 1.2e-06, 39.45% id in 109 aa; putative fkbp-type 22 kDa peptidyl-prolyl cis-trans isomerase 432068 3286144 BF9343_0346 Bacteroides fragilis NCTC 9343 putative fkbp-type 22 kDa peptidyl-prolyl cis-trans isomerase YP_210087.1 431517 D 272559 CDS YP_210088.1 60679944 3286126 complement(432180..433061) 1 NC_003228.3 no significant database matches; hypothetical protein 433061 3286126 BF9343_0347 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210088.1 432180 R 272559 CDS YP_210089.1 60679945 3288543 complement(433121..433501) 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT3571 SWALL:AAO78677 (EMBL:AE016941) (118 aa) fasta scores: E(): 0.17, 24.39% id in 123 aa; hypothetical protein 433501 3288543 BF9343_0348 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210089.1 433121 R 272559 CDS YP_210090.1 60679946 3288537 complement(433650..435347) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TPR-repeat-containing proteins BT3570 SWALL:Q8A1T8 (EMBL:AE016941) (566 aa) fasta scores: E(): 1.8e-32, 32.31% id in 557 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0240 SWALL:Q8AB71 (EMBL:AE016926) (584 aa) fasta scores: E(): 5.7e-23, 25.82% id in 577 aa, and to Bacteroides thetaiotaomicron TPR-repeat-containing protein BT3220 SWALL:Q8A2T5 (EMBL:AE016939) (578 aa) fasta scores: E(): 1.1e-19, 24.73% id in 570 aa; putative transmembrane protein 435347 3288537 BF9343_0349 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210090.1 433650 R 272559 CDS YP_210091.1 60679947 3288485 435432..435935 1 NC_003228.3 Similar to Bacteroides fragilis nitroimidazole resistance protein NimE SWALL:Q9L4E6 (EMBL:AJ244018) (153 aa) fasta scores: E(): 8.2e-14, 38.41% id in 151 aa, and to Clostridium tetani 5-nitroimidazole antibiotic resistance protein CTC00899 SWALL:AAO35491 (EMBL:AE015939) (154 aa) fasta scores: E(): 1.2e-20, 46.71% id in 152 aa, and to Clostridium acetobutylicum possible 5-nitroimidazole antibiotics resistance protein, NimA-family CAC2475 SWALL:Q97G94 (EMBL:AE007746) (154 aa) fasta scores: E(): 2.2e-15, 42.76% id in 152 aa; putative nitroimidazole resistance-like protein 435935 3288485 BF9343_0350 Bacteroides fragilis NCTC 9343 putative nitroimidazole resistance-like protein YP_210091.1 435432 D 272559 CDS YP_210092.1 60679948 3286129 436077..436664 1 NC_003228.3 Similar to Wolinella succinogenes cytochrome c-type protein NrfH SWALL:NRFH_WOLSU (SWALL:Q9S1E6) (177 aa) fasta scores: E(): 4.8e-22, 38.18% id in 165 aa, and to Bacteroides thetaiotaomicron quinol oxidase BT1418 SWALL:AAO76525 (EMBL:AE016931) (198 aa) fasta scores: E(): 1.4e-63, 73.71% id in 194 aa, and to Sulfurospirillum deleyianum quinol oxidase NrfH SWALL:Q8VM54 (EMBL:AJ133037) (177 aa) fasta scores: E(): 5.2e-24, 40.25% id in 159 aa; putative NapC/NirT cytochrome c-type protein 436664 3286129 BF9343_0351 Bacteroides fragilis NCTC 9343 putative NapC/NirT cytochrome c-type protein YP_210092.1 436077 D 272559 CDS YP_210093.1 60679949 3289172 436688..438169 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 cytochrome c552 precursor NrfA or B4070 or Z5669 or ECS5052 SWALL:NRFA_ECOLI (SWALL:P32050) (478 aa) fasta scores: E(): 5.1e-82, 46% id in 450 aa, and to Bacteroides thetaiotaomicron cytochrome c552 precursor BT1417 SWALL:AAO76524 (EMBL:AE016931) (493 aa) fasta scores: E(): 1.3e-170, 83.53% id in 492 aa, and to Pasteurella multocida cytochrome c552 precursor NrfA or pm0023 SWALL:NRFA_PASMU (SWALL:Q9CPL4) (510 aa) fasta scores: E(): 2.2e-87, 48.77% id in 449 aa; putative exported cytochrome c552 438169 nrfA 3289172 nrfA Bacteroides fragilis NCTC 9343 putative exported cytochrome c552 YP_210093.1 436688 D 272559 CDS YP_210094.1 60679950 3288486 438173..439414 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1416 SWALL:AAO76523 (EMBL:AE016931) (411 aa) fasta scores: E(): 7e-102, 61.25% id in 413 aa, and to Chlorobium tepidum hypothetical protein CT1560 SWALL:Q8KC66 (EMBL:AE012912) (414 aa) fasta scores: E(): 1.6e-32, 28.67% id in 408 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1604 SWALL:AAO76711 (EMBL:AE016932) (292 aa) fasta scores: E(): 2.3e-12, 26.4% id in 231 aa; putative transmembrane protein 439414 3288486 BF9343_0353 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210094.1 438173 D 272559 CDS YP_210095.1 60679951 3288412 439411..440202 1 NC_003228.3 C-terminus is similar to Chlamydomonas reinhardtii cytochrome c biogenesis protein CcsA SWALL:CCSA_CHLRE (SWALL:P48269) (353 aa) fasta scores: E(): 4.6e-13, 31.03% id in 232 aa, and to Bacteroides thetaiotaomicron cytochrome c biogenesis protein CcsA BT1415 SWALL:AAO76522 (EMBL:AE016931) (263 aa) fasta scores: E(): 3e-92, 80.98% id in 263 aa, and to Bacteroides thetaiotaomicron cytochrome c biogenesis protein BT1605 SWALL:AAO76712 (EMBL:AE016932) (261 aa) fasta scores: E(): 1.4e-62, 57.57% id in 264 aa; putative cytochrome c biogenesis protein 440202 3288412 BF9343_0354 Bacteroides fragilis NCTC 9343 putative cytochrome c biogenesis protein YP_210095.1 439411 D 272559 CDS YP_210096.1 60679952 3288414 440235..441500 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1414 SWALL:AAO76521 (EMBL:AE016931) (428 aa) fasta scores: E(): 1.9e-102, 58.29% id in 434 aa; hypothetical protein 441500 3288414 BF9343_0355 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210096.1 440235 D 272559 CDS YP_210097.1 60679953 3286081 441547..442233 1 NC_003228.3 Similar to Pseudomonas stutzeri FNR family DnrE protein SWALL:Q9X7J7 (EMBL:AJ131716) (231 aa) fasta scores: E(): 4.3e-05, 22.82% id in 184 aa, and to Bacteroides thetaiotaomicron putative transcription regulator BT1413 SWALL:AAO76520 (EMBL:AE016931) (229 aa) fasta scores: E(): 1.9e-42, 51.73% id in 230 aa, and to Bacteroides thetaiotaomicron cAMP-binding domain BT0688 SWALL:AAO75795 (EMBL:AE016928) (222 aa) fasta scores: E(): 1.9e-17, 31.22% id in 205 aa; putative FNR-family transcriptional regulatory protein 442233 3286081 BF9343_0356 Bacteroides fragilis NCTC 9343 putative FNR-family transcriptional regulatory protein YP_210097.1 441547 D 272559 CDS YP_210098.1 60679954 3285975 complement(442245..444128) 1 NC_003228.3 Similar to the C-terminus of Bacteroides fragilis sialate O-acetylesterase EstA SWALL:BAC56897 (EMBL:AB102772) (220 aa) fasta scores: E(): 8e-27, 41.82% id in 208 aa, and to the N-terminus of Escherichia coli hypothetical protein YfeW precursor or B2430 SWALL:YFEW_ECOLI (SWALL:P77619) (434 aa) fasta scores: E(): 3.3e-26, 31.6% id in 386 aa, and to the N-terminus of Salmonella typhi hypothetical protein YfeW precursor or STY2716 or t0381 SWALL:AAO68099 (EMBL:AL627274) (432 aa) fasta scores: E(): 2.9e-25, 31.38% id in 427 aa. CDS may be a fusion protein.; putative beta-lactamase/acylhydrolase 444128 3285975 BF9343_0357 Bacteroides fragilis NCTC 9343 putative beta-lactamase/acylhydrolase YP_210098.1 442245 R 272559 CDS YP_210099.1 60679955 3288545 complement(444161..445006) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative sugar phosphate isomerase BT0133 SWALL:AAO75240 (EMBL:AE016926) (277 aa) fasta scores: E(): 4.4e-82, 84.64% id in 267 aa, and to Thermoanaerobacter tengcongensis predicted sugar phosphate isomerase TTE0212 SWALL:Q8RD35 (EMBL:AE012994) (306 aa) fasta scores: E(): 4.3e-42, 50.79% id in 252 aa, and to Salmonella typhi putative phophosugar binding protein STY2817 or t0286 SWALL:AAO68011 (EMBL:AL627275) (297 aa) fasta scores: E(): 4.9e-41, 48.3% id in 265 aa; putative glucokinase/SIS domain protein 445006 3288545 BF9343_0358 Bacteroides fragilis NCTC 9343 putative glucokinase/SIS domain protein YP_210099.1 444161 R 272559 CDS YP_210100.1 60679956 3288408 complement(445030..445866) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3618 SWALL:AAO78723 (EMBL:AE016941) (283 aa) fasta scores: E(): 1.6e-73, 67.14% id in 277 aa; hypothetical protein 445866 3288408 BF9343_0359 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210100.1 445030 R 272559 CDS YP_210101.1 60679957 3288534 complement(445863..447026) 1 NC_003228.3 Similar to Leptospira interrogans conserved hypothetical protein La0773 SWALL:Q8F816 (EMBL:AE011263) (381 aa) fasta scores: E(): 1.5e-17, 34.39% id in 407 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3619 SWALL:AAO78724 (EMBL:AE016941) (372 aa) fasta scores: E(): 6.7e-75, 71.13% id in 388 aa, and to Anabaena sp. hypothetical protein ALL1887 SWALL:Q8YVT7 (EMBL:AP003587) (375 aa) fasta scores: E(): 5e-32, 34.66% id in 401 aa; putative transmembrane protein 447026 3288534 BF9343_0360 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210101.1 445863 R 272559 CDS YP_210102.1 60679958 3288528 complement(447035..449905) 1 NC_003228.3 Similar to Vibrio vulnificus Fe-S oxidoreductase VV20801 SWALL:Q8D5V2 (EMBL:AE016810) (946 aa) fasta scores: E(): 4e-154, 45.02% id in 944 aa, and to Vibrio cholerae oxidoreductase/iron-sulfur cluster-binding protein VCA0985 SWALL:Q9KKW5 (EMBL:AE004425) (959 aa) fasta scores: E(): 6.9e-151, 44.14% id in 956 aa, and to Pseudomonas aeruginosa probable ferredoxin PA4772 SWALL:Q9HV36 (EMBL:AE004890) (938 aa) fasta scores: E(): 1e-118, 44.86% id in 954 aa, and to Pseudomonas putida D-lactate dehydrogenase, putative PP4737 SWALL:AAN70309 (EMBL:AE016791) (936 aa) fasta scores: E(): 2.4e-118, 45.4% id in 958 aa; putative FAD-binding oxidoreductase 449905 3288528 BF9343_0361 Bacteroides fragilis NCTC 9343 putative FAD-binding oxidoreductase YP_210102.1 447035 R 272559 CDS YP_210103.1 60679959 3286004 complement(449941..451215) 1 NC_003228.3 Similar to Oceanobacillus iheyensis hypothetical conserved protein OB1304 SWALL:Q8ERJ8 (EMBL:AP004597) (509 aa) fasta scores: E(): 1.8e-64, 45% id in 420 aa, and to Bacillus halodurans hypothetical protein BH0674 SWALL:Q9KF23 (EMBL:AP001509) (418 aa) fasta scores: E(): 3.1e-63, 43.26% id in 423 aa, and to Bacillus subtilis hypothetical protein YbbC precursor SWALL:YBBC_BACSU (SWALL:P40407) (414 aa) fasta scores: E(): 9.8e-63, 43.02% id in 423 aa; hypothetical protein 451215 3286004 BF9343_0362 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210103.1 449941 R 272559 CDS YP_210104.1 60679960 3285863 complement(451257..452555) 1 NC_003228.3 Similar to Pseudomonas aeruginosa permease for AmpC beta-lactamase expression AmpG or pa4393 SWALL:Q9X3S5 (EMBL:AF082985) (594 aa) fasta scores: E(): 9.5e-09, 29.61% id in 260 aa, and to Bacteroides thetaiotaomicron AmpG protein, beta-lactamase induction signal transducer BT3620 SWALL:AAO78725 (EMBL:AE016941) (393 aa) fasta scores: E(): 7.2e-94, 59.28% id in 393 aa, and to Bacteroides thetaiotaomicron putative signal transducer BT1034 SWALL:AAO76141 (EMBL:AE016930) (443 aa) fasta scores: E(): 2.3e-26, 36.32% id in 435 aa; putative transmembrane permease 452555 3285863 BF9343_0363 Bacteroides fragilis NCTC 9343 putative transmembrane permease YP_210104.1 451257 R 272559 CDS YP_210105.1 60679961 3288489 complement(452571..453926) 1 NC_003228.3 Similar to Bacillus subtilis amidase enhancer precursor LytB or CwbA SWALL:CWBA_BACSU (SWALL:Q02113) (705 aa) fasta scores: E(): 9.5e-06, 23.26% id in 374 aa, and to Bacteroides thetaiotaomicron amidase enhancer precursor BT3621 SWALL:AAO78726 (EMBL:AE016941) (459 aa) fasta scores: E(): 2e-85, 64.66% id in 467 aa, and to Synechococcus elongatus Tll0391 protein SWALL:Q8DLT7 (EMBL:AP005370) (389 aa) fasta scores: E(): 4.5e-08, 29.1% id in 378 aa; hypothetical protein 453926 3288489 BF9343_0364 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210105.1 452571 R 272559 CDS YP_210106.1 60679962 3288547 complement(456342..458207) 1 NC_003228.3 N-terminus is similar to the C-terminus of Methanobacterium thermoautotrophicum serine/threonine protein kinase related protein MTH1485 SWALL:O27529 (EMBL:AE000909) (407 aa) fasta scores: E(): 3.3e-16, 23.98% id in 321 aa, and N-terminus is similar to the C-terminus of Methanosarcina acetivorans cell surface protein ma3699 SWALL:Q8TJS8 (EMBL:AE011080) (2523 aa) fasta scores: E(): 2.3e-11, 28.14% id in 302 aa, and N-terminus is similar to the C-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein with conserved domains BT3030 SWALL:AAO78136 (EMBL:AE016938) (824 aa) fasta scores: E(): 7.6e-11, 27.76% id in 353 aa; putative PQQ-binding exported phosphoesterase 458207 3288547 BF9343_0366 Bacteroides fragilis NCTC 9343 putative PQQ-binding exported phosphoesterase YP_210106.1 456342 R 272559 CDS YP_210107.1 60679963 3288451 complement(458303..461374) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron xanthan lyase BT0257 SWALL:AAO75364 (EMBL:AE016926) (970 aa) fasta scores: E(): 3.8e-79, 44.54% id in 1035 aa, and limited similarity to C-terminus of Bacillus sp. GL1 xanthan lyase Xly SWALL:Q9AQS0 (EMBL:AB037178) (930 aa) fasta scores: E(): 0.022, 31.48% id in 108 aa; possible exported xanthan lyase/N-acetylmuramoyl-L-alanine amidase 461374 3288451 BF9343_0367 Bacteroides fragilis NCTC 9343 possible exported xanthan lyase/N-acetylmuramoyl-L-alanine amidase YP_210107.1 458303 R 272559 CDS YP_210108.1 60679964 3286088 complement(461377..462834) 1 NC_003228.3 Similar to Homo sapiens sodium/iodide cotransporter slc5a5 or Nis SWALL:SL55_HUMAN (SWALL:Q92911) (643 aa) fasta scores: E(): 1.6e-18, 21.42% id in 406 aa, and to Bacteroides thetaiotaomicron sodium/iodide co-transporter BT3623 SWALL:AAO78728 (EMBL:AE016941) (495 aa) fasta scores: E(): 2.1e-156, 81.66% id in 480 aa, and to Bacteroides thetaiotaomicron Na+/solute symporter BT1082 SWALL:AAO76189 (EMBL:AE016930) (438 aa) fasta scores: E(): 9.6e-84, 49.07% id in 434 aa; putative cation symporter 462834 3286088 BF9343_0368 Bacteroides fragilis NCTC 9343 putative cation symporter YP_210108.1 461377 R 272559 CDS YP_210109.1 60679965 3286031 complement(462875..464044) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2135 SWALL:AAO77242 (EMBL:AE016934) (387 aa) fasta scores: E(): 2.7e-68, 49.22% id in 386 aa, and to Clostridium acetobutylicum uncharacterized membrane protein, YbbC B.subtilis ortholog CAC0185 SWALL:Q97ML1 (EMBL:AE007531) (382 aa) fasta scores: E(): 2.2e-37, 36.76% id in 389 aa, and to Bacillus subtilis hypothetical protein YbbC precursor SWALL:YBBC_BACSU (SWALL:P40407) (414 aa) fasta scores: E(): 1.5e-36, 40.15% id in 391 aa; hypothetical protein 464044 3286031 BF9343_0369 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210109.1 462875 R 272559 CDS YP_210110.1 60679966 3288483 complement(464265..465962) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1620 SWALL:AAO76727 (EMBL:AE016932) (618 aa) fasta scores: E(): 4.4e-22, 28.28% id in 640 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0030 SWALL:AAO75137 (EMBL:AE016926) (609 aa) fasta scores: E(): 9.2e-22, 28.93% id in 636 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0755 SWALL:AAO75862 (EMBL:AE016929) (601 aa) fasta scores: E(): 1.3e-16, 30.21% id in 609 aa; conserved hypothetical lipoprotein 465962 3288483 BF9343_0370 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_210110.1 464265 R 272559 CDS YP_210111.1 60679967 3288525 complement(465992..469327) 1 NC_003228.3 Similar to Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 2.2e-37, 28.34% id in 1122 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 2.3e-116, 36.57% id in 1091 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4357 SWALL:AAO79462 (EMBL:AE016945) (1178 aa) fasta scores: E(): 3e-91, 36.88% id in 1109 aa; hypothetical protein 469327 3288525 BF9343_0371 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210111.1 465992 R 272559 CDS YP_210112.1 60679968 3288452 complement(469789..470637) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3618 SWALL:AAO78723 (EMBL:AE016941) (283 aa) fasta scores: E(): 6.6e-48, 46.4% id in 278 aa; hypothetical protein 470637 3288452 BF9343_0372 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210112.1 469789 R 272559 CDS YP_210113.1 60679969 3289129 complement(470937..471947) 1 NC_003228.3 Similar to Legionella pneumophila aspartate-semialdehyde dehydrogenase Asd SWALL:DHAS_LEGPN (SWALL:O31219) (347 aa) fasta scores: E(): 1.2e-54, 48.06% id in 335 aa, and to Bacteroides thetaiotaomicron aspartate-semialdehyde dehydrogenase BT3636 SWALL:AAO78741 (EMBL:AE016941) (335 aa) fasta scores: E(): 8e-120, 96.41% id in 335 aa, and to Aquifex aeolicus aspartate-semialdehyde dehydrogenase AsD or AQ_1866 SWALL:DHAS_AQUAE (SWALL:O67716) (340 aa) fasta scores: E(): 5.1e-69, 58.45% id in 337 aa; putative aspartate-semialdehyde dehydrogenase 471947 asd 3289129 asd Bacteroides fragilis NCTC 9343 putative aspartate-semialdehyde dehydrogenase YP_210113.1 470937 R 272559 CDS YP_210114.1 60679970 3288336 472145..474280 1 NC_003228.3 Similar to Lactococcus lactis Na+/H+ antiporter homolog Nah SWALL:Q48731 (EMBL:X73329) (379 aa) fasta scores: E(): 3.5e-17, 24.54% id in 387 aa, and to Bacteroides thetaiotaomicron Na+/H+ anti-porter BT3638 SWALL:AAO78743 (EMBL:AE016941) (711 aa) fasta scores: E(): 0, 89.59% id in 711 aa, and to Chlorobium tepidum Na+/H+ antiporter, putative CT1144 SWALL:Q8KDB0 (EMBL:AE012875) (784 aa) fasta scores: E(): 7.1e-95, 37.86% id in 721 aa; putative Na+/H+ antiporter 474280 3288336 BF9343_0374 Bacteroides fragilis NCTC 9343 putative Na+/H+ antiporter YP_210114.1 472145 D 272559 CDS YP_210115.1 60679971 3286179 474280..474990 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis BT3639 SWALL:AAO78744 (EMBL:AE016941) (238 aa) fasta scores: E(): 3.3e-78, 87.17% id in 234 aa, and to Fusobacterium nucleatum molybdopterin biosynthesis MoeB protein FN0725 SWALL:Q8RFH3 (EMBL:AE010583) (234 aa) fasta scores: E(): 6.3e-27, 40.61% id in 229 aa, and to Staphylococcus aureus hypothetical protein sav1628 or sa1455 or mw1578 SWALL:Q99TM1 (EMBL:AP003363) (257 aa) fasta scores: E(): 2.1e-25, 35% id in 240 aa; putative ThiF family protein 474990 3286179 BF9343_0375 Bacteroides fragilis NCTC 9343 putative ThiF family protein YP_210115.1 474280 D 272559 CDS YP_210116.1 60679972 3286125 474995..475645 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron lipoprotein releasing system ATP-binding protein BT3640 SWALL:AAO78745 (EMBL:AE016941) (218 aa) fasta scores: E(): 8.9e-64, 88.37% id in 215 aa, and to Methanosarcina mazei ABC transporter, ATP-binding protein MM2833 SWALL:Q8PT84 (EMBL:AE013533) (227 aa) fasta scores: E(): 3.2e-34, 48.62% id in 218 aa, and to Chlorobium tepidum ABC transporter, ATP-binding protein CT1474 SWALL:Q8KCE8 (EMBL:AE012904) (247 aa) fasta scores: E(): 5.8e-34, 50.66% id in 225 aa; putative ABC transporter ATP-binding protein 475645 3286125 BF9343_0376 Bacteroides fragilis NCTC 9343 putative ABC transporter ATP-binding protein YP_210116.1 474995 D 272559 CDS YP_210117.1 60679973 3288374 complement(475646..476548) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3641 SWALL:AAO78746 (EMBL:AE016941) (309 aa) fasta scores: E(): 3.9e-53, 53.39% id in 309 aa; hypothetical protein 476548 3288374 BF9343_0377 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210117.1 475646 R 272559 CDS YP_210118.1 60679974 3288426 complement(476551..477918) 1 NC_003228.3 Similar to Staphylococcus epidermidis sodium-dependent transporter se2326 SWALL:Q8CMR4 (EMBL:AE016752) (416 aa) fasta scores: E(): 2.8e-52, 38.22% id in 429 aa, and to Bacteroides thetaiotaomicron Na+-dependent transporter BT3642 SWALL:AAO78747 (EMBL:AE016941) (456 aa) fasta scores: E(): 5.6e-164, 89.45% id in 455 aa, and to Vibrio parahaemolyticus putative sodium-dependent transporter vp1184 SWALL:BAC59447 (EMBL:AP005077) (476 aa) fasta scores: E(): 2.9e-76, 44.42% id in 448 aa; putative sodium-dependent transporter 477918 3288426 BF9343_0378 Bacteroides fragilis NCTC 9343 putative sodium-dependent transporter YP_210118.1 476551 R 272559 CDS YP_210119.1 60679975 3288449 478023..478415 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3643 SWALL:AAO78748 (EMBL:AE016941) (130 aa) fasta scores: E(): 5.7e-49, 79.23% id in 130 aa, and to Neisseria meningitidis hypothetical protein NMB0794 SWALL:Q9K030 (EMBL:AE002433) (120 aa) fasta scores: E(): 1e-05, 32.52% id in 123 aa; putative transmembrane protein 478415 3288449 BF9343_0379 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210119.1 478023 D 272559 CDS YP_210120.1 60679976 3289257 complement(478420..479718) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-d-alanyl-d-alanyl ligase BT3644 SWALL:AAO78749 (EMBL:AE016941) (432 aa) fasta scores: E(): 7.2e-140, 82.87% id in 432 aa, and to Cytophaga johnsonae MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase UDP-MurNAc-pentapeptide synthetase)SWALL:Q8KRM7 (EMBL:AF527793) (428 aa) fasta scores: E(): 1.6e-63, 43.93% id in 437 aa, and to Escherichia coli UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase MurF or Mra or B0086 SWALL:MURF_ECOLI (SWALL:P11880) (452 aa) fasta scores: E(): 2.1e-39, 36.53% id in 438 aa; putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase 479718 murF 3289257 murF Bacteroides fragilis NCTC 9343 putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase YP_210120.1 478420 R 272559 CDS YP_210121.1 60679977 3286089 complement(479761..480996) 1 NC_003228.3 Similar to Staphylococcus epidermidis quinolone resistance protein se0466 SWALL:Q8CQ24 (EMBL:AE016745) (387 aa) fasta scores: E(): 1.3e-09, 23.39% id in 359 aa, and to Bacteroides thetaiotaomicron putative sugar transporter BT2568 SWALL:AAO77675 (EMBL:AE016936) (410 aa) fasta scores: E(): 2e-110, 69.34% id in 411 aa, and to Streptococcus mutans conserved hypothetical protein SMU.145 SWALL:Q8DWC0 (EMBL:AE014866) (394 aa) fasta scores: E(): 2.5e-13, 24.61% id in 386 aa; putative transporter/antibiotic resistance protein 480996 3286089 BF9343_0381 Bacteroides fragilis NCTC 9343 putative transporter/antibiotic resistance protein YP_210121.1 479761 R 272559 CDS YP_210122.1 60679978 3286698 481258..482700 1 NC_003228.3 Similar to Listeria monocytogenes glutamate decarboxylase beta GadD or LMO2363 SWALL:DCEB_LISMO (SWALL:Q9EYW9) (464 aa) fasta scores: E(): 2.1e-79, 46.52% id in 432 aa, and to Bacteroides thetaiotaomicron glutamate decarboxylase BT2570 SWALL:AAO77677 (EMBL:AE016936) (481 aa) fasta scores: E(): 1.1e-188, 94.72% id in 474 aa, and to Synechocystis sp. glutamate decarboxylase Gad or sll1641 SWALL:P73043 (EMBL:D90903) (467 aa) fasta scores: E(): 3e-86, 49.63% id in 415 aa; putative glutamate decarboxylase 482700 gadB 3286698 gadB Bacteroides fragilis NCTC 9343 putative glutamate decarboxylase YP_210122.1 481258 D 272559 CDS YP_210123.1 60679979 3286808 482716..483681 1 NC_003228.3 Similar to Rhizobium etli thermolabile glutaminase GlsA SWALL:GLSA_RHIET (SWALL:O87405) (309 aa) fasta scores: E(): 2.1e-27, 31.71% id in 309 aa, and to Bacteroides thetaiotaomicron putative glutaminase BT2571 SWALL:AAO77678 (EMBL:AE016936) (321 aa) fasta scores: E(): 4.6e-105, 84.11% id in 321 aa, and to Shigella flexneri putative glutaminase YbaS or SF0430 SWALL:AAN42085 (EMBL:AE015075) (310 aa) fasta scores: E(): 1.5e-49, 44.51% id in 310 aa; putative glutaminase 483681 glsA 3286808 glsA Bacteroides fragilis NCTC 9343 putative glutaminase YP_210123.1 482716 D 272559 CDS YP_210124.1 60679980 3288471 complement(483767..485782) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT3645 SWALL:AAO78750 (EMBL:AE016941) (671 aa) fasta scores: E(): 2e-99, 43.24% id in 666 aa, and to Bacteroides thetaiotaomicron two-component sensor histidine kinase BT0654 SWALL:AAO75761 (EMBL:AE016928) (660 aa) fasta scores: E(): 6.8e-36, 39.93% id in 308 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1802 SWALL:AAO76909 (EMBL:AE016933) (685 aa) fasta scores: E(): 1.9e-31, 27.23% id in 639 aa; putative two-component system sensor histidine kinase 485782 3288471 BF9343_0384 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase YP_210124.1 483767 R 272559 CDS YP_210125.1 60679981 3285105 485894..486754 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri dihydropteroate synthase FolP or DhpS or B3177 or C3933 or SF3217 SWALL:DHPS_ECOLI (SWALL:P26282) (282 aa) fasta scores: E(): 1e-37, 44.11% id in 272 aa, and to Bacteroides thetaiotaomicron dihydropteroate synthase BT3646 SWALL:AAO78751 (EMBL:AE016941) (287 aa) fasta scores: E(): 5.8e-89, 83.27% id in 275 aa, and to Vibrio cholerae dihydropteroate synthase vc0638 SWALL:Q9KU85 (EMBL:AE004149) (278 aa) fasta scores: E(): 1.2e-38, 41.69% id in 271 aa; putative dihydropteroate synthase 486754 folP 3285105 folP Bacteroides fragilis NCTC 9343 putative dihydropteroate synthase YP_210125.1 485894 D 272559 CDS YP_210126.1 60679982 3286169 486789..487553 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3647 SWALL:Q8A1L4 (EMBL:AE016941) (228 aa) fasta scores: E(): 3.4e-70, 84.64% id in 228 aa, and to Clostridium perfringens hypothetical protein CPE2351 CPE2351 SWALL:Q8XHX5 (EMBL:AP003194) (285 aa) fasta scores: E(): 7e-33, 43.19% id in 257 aa, and to Staphylococcus aureus conserved hypothetoical protein sav2163 or sa1967 or mw2090 SWALL:Q9RL70 (EMBL:Y09927) (269 aa) fasta scores: E(): 5.5e-30, 43.9% id in 246 aa. Possible alternative start site at codon 27; putative transmembrane protein 487553 3286169 BF9343_0386 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210126.1 486789 D 272559 CDS YP_210127.1 60679983 3288354 488177..488437 1 NC_003228.3 no significant database matches; hypothetical protein 488437 3288354 BF9343_0387 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210127.1 488177 D 272559 CDS YP_210128.1 60679984 3288406 488434..489504 1 NC_003228.3 no significant database matches; putative transmembrane protein 489504 3288406 BF9343_0388 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210128.1 488434 D 272559 CDS YP_210129.1 60679985 3286113 489570..489797 1 NC_003228.3 no significant database matches; hypothetical protein 489797 3286113 BF9343_0389 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210129.1 489570 D 272559 CDS YP_210130.1 60679986 3288510 489797..490684 1 NC_003228.3 Similar to C-terminus of Bacteroides thetaiotaomicron hypothetical protein BT1085 SWALL:AAO76192 (EMBL:AE016930) (131 aa) fasta scores: E(): 1.1e-09, 35.48% id in 124 aa, and the N-terminus is similar to the C-terminus of Bacteroides thetaiotaomicron hypothetical protein BT4048 SWALL:AAO79153 (EMBL:AE016943) (373 aa) fasta scores: E(): 6.7e-08, 26.92% id in 130 aa; hypothetical protein 490684 3288510 BF9343_0390 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210130.1 489797 D 272559 CDS YP_210131.1 60679987 3288370 490815..491081 1 NC_003228.3 no significant database matches; hypothetical protein 491081 3288370 BF9343_0391 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210131.1 490815 D 272559 CDS YP_210132.1 60679988 3286156 491253..492329 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0659 SWALL:AAO75766 (EMBL:AE016928) (345 aa) fasta scores: E(): 2.4e-10, 21.73% id in 345 aa; hypothetical protein 492329 3286156 BF9343_0392 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210132.1 491253 D 272559 CDS YP_210133.1 60679989 3288089 492490..493629 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:Q8AA01 (EMBL:AE016928) (382 aa) fasta scores: E(): 2e-08, 24.18% id in 244 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:Q8AA04 (EMBL:AE016928) (408 aa) fasta scores: E(): 1.2e-05, 29.53% id in 149 aa; hypothetical protein 493629 3288089 BF9343_0393 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210133.1 492490 D 272559 CDS YP_210134.1 60679990 3288362 494291..494599 1 NC_003228.3 no significant database matches; hypothetical protein 494599 3288362 BF9343_0395 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210134.1 494291 D 272559 CDS YP_210135.1 60679991 3288424 494781..495902 1 NC_003228.3 no significant database matches; hypothetical protein 495902 3288424 BF9343_0396 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210135.1 494781 D 272559 CDS YP_210136.1 60679992 3286211 496011..497924 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0668 SWALL:AAO75775 (EMBL:AE016928) (649 aa) fasta scores: E(): 1.1e-152, 57.05% id in 645 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3420 SWALL:AAO78526 (EMBL:AE016940) (508 aa) fasta scores: E(): 3.9e-24, 25.62% id in 523 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3542 SWALL:AAO78648 (EMBL:AE016941) (400 aa) fasta scores: E(): 7.9e-17, 27.75% id in 400 aa; hypothetical protein 497924 3286211 BF9343_0397 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210136.1 496011 D 272559 CDS YP_210137.1 60679993 3286132 498026..498319 1 NC_003228.3 no significant database matches; hypothetical protein 498319 3286132 BF9343_0398 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210137.1 498026 D 272559 CDS YP_210138.1 60679994 3288401 498507..499709 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 0.094, 21.46% id in 410 aa; hypothetical protein 499709 3288401 BF9343_0399 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210138.1 498507 D 272559 CDS YP_210139.1 60679995 3288431 complement(499757..500776) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative acetyltransferase BT3688 SWALL:AAO78793 (EMBL:AE016941) (339 aa) fasta scores: E(): 6.4e-78, 55.42% id in 341 aa, and to Fusobacterium nucleatum acetyltransferase FN1041 SWALL:Q8R651 (EMBL:AE010611) (391 aa) fasta scores: E(): 1.8e-09, 24.36% id in 316 aa, and to Bacillus halodurans hypothetical protein BH1812 SWALL:Q9KBW2 (EMBL:AP001513) (386 aa) fasta scores: E(): 2.9e-05, 24.92% id in 317 aa; possible acetyltransferase 500776 3288431 BF9343_0400 Bacteroides fragilis NCTC 9343 possible acetyltransferase YP_210139.1 499757 R 272559 CDS YP_210140.1 60679996 3288371 complement(500786..501703) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3689 SWALL:AAO78794 (EMBL:AE016941) (305 aa) fasta scores: E(): 4.8e-106, 81.63% id in 305 aa, and to Clostridium tetani conserved protein CTC00813 SWALL:AAO35411 (EMBL:AE015938) (303 aa) fasta scores: E(): 2.8e-33, 35.43% id in 302 aa, and to Helicobacter pylori J99 putative jhp0277 SWALL:Q9ZME3 (EMBL:AE001465) (290 aa) fasta scores: E(): 3.8e-30, 34.7% id in 291 aa; hypothetical protein 501703 3288371 BF9343_0401 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210140.1 500786 R 272559 CDS YP_210141.1 60679997 3288463 complement(501759..502454) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative membrane protein BT3690 SWALL:AAO78795 (EMBL:AE016941) (231 aa) fasta scores: E(): 3.9e-73, 90.47% id in 231 aa, and to Neisseria meningitidis hypothetical inner membrane protein NMA0436 SWALL:Q9JWD1 (EMBL:AL162753) (230 aa) fasta scores: E(): 4.4e-34, 44.78% id in 230 aa, and to Neisseria meningitidis hypothetical protein NMB2004 NMB2004 SWALL:Q9JXJ9 (EMBL:AE002550) (230 aa) fasta scores: E(): 5.1e-34, 44.78% id in 230 aa; putative LrgB family transmembrane protein 502454 3288463 BF9343_0402 Bacteroides fragilis NCTC 9343 putative LrgB family transmembrane protein YP_210141.1 501759 R 272559 CDS YP_210142.1 60679998 3286180 complement(502451..502789) 1 NC_003228.3 Similar to Staphylococcus aureus holin-like protein LrgA or sav0262 or sa0252 SWALL:Q99WW2 (EMBL:AP003358) (145 aa) fasta scores: E(): 1.1e-06, 30.55% id in 108 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative membrane protein BT3691 SWALL:AAO78796 (EMBL:AE016941) (147 aa) fasta scores: E(): 3.7e-40, 89.28% id in 112 aa, and to Neisseria meningitidis hypothetical inner membrane protein NMA0437 SWALL:Q9JWD0 (EMBL:AL162753) (114 aa) fasta scores: E(): 1e-17, 46.84% id in 111 aa; putative transmembrane holin-like protein LrgA 502789 3286180 BF9343_0403 Bacteroides fragilis NCTC 9343 putative transmembrane holin-like protein LrgA YP_210142.1 502451 R 272559 CDS YP_210143.1 60679999 3286140 502998..503681 1 NC_003228.3 no significant database matches; hypothetical protein 503681 3286140 BF9343_0404 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210143.1 502998 D 272559 CDS YP_210144.1 60680000 3288141 503707..504504 1 NC_003228.3 no significant database matches; hypothetical protein 504504 3288141 BF9343_0405 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210144.1 503707 D 272559 CDS YP_210145.1 60680001 3288448 504546..506102 1 NC_003228.3 no significant database matches; hypothetical protein 506102 3288448 BF9343_0406 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210145.1 504546 D 272559 CDS YP_210146.1 60680002 3289295 506236..507255 1 NC_003228.3 Similar to Clostridium thermosaccharolyticum phosphate acetyltransferase Pta or PtaA SWALL:PTA_CLOTS (SWALL:Q59330) (328 aa) fasta scores: E(): 3.3e-58, 52.55% id in 333 aa, and to Bacteroides thetaiotaomicron phosphate acetyltransferase BT3692 SWALL:AAO78797 (EMBL:AE016941) (339 aa) fasta scores: E(): 1.5e-107, 88.49% id in 339 aa, and to Thermoanaerobacter tengcongensis phosphotransacetylase Pta or TTE1482 SWALL:Q8R9V3 (EMBL:AE013105) (331 aa) fasta scores: E(): 1.9e-66, 57.65% id in 333 aa; putative phosphate acetyltransferase 507255 ptaA 3289295 ptaA Bacteroides fragilis NCTC 9343 putative phosphate acetyltransferase YP_210146.1 506236 D 272559 CDS YP_210147.1 60680003 3289091 507274..508470 1 NC_003228.3 Similar to Thermotoga maritima acetate kinase AckA or TM0274 SWALL:ACKA_THEMA (SWALL:Q9WYB1) (403 aa) fasta scores: E(): 5.1e-89, 59.85% id in 401 aa, and to Bacteroides thetaiotaomicron acetate kinase BT3693 SWALL:AAO78798 (EMBL:AE016941) (399 aa) fasta scores: E(): 5.5e-130, 83.96% id in 399 aa, and to Clostridium thermosaccharolyticum acetate kinase AckA SWALL:ACKA_CLOTS (SWALL:Q59331) (400 aa) fasta scores: E(): 3.2e-88, 58.29% id in 398 aa; putative acetate kinase 508470 ackA 3289091 ackA Bacteroides fragilis NCTC 9343 putative acetate kinase YP_210147.1 507274 D 272559 CDS YP_210148.1 60680004 3288503 508693..510093 1 NC_003228.3 Similar to Bacillus subtilis alkaline phosphatase IV precursor PhoA or PhoAIV SWALL:PPB4_BACSU (SWALL:P19406) (461 aa) fasta scores: E(): 6.4e-29, 33.76% id in 459 aa, and to Bacteroides thetaiotaomicron alkaline phosphatase III precursor BT3708 SWALL:AAO78813 (EMBL:AE016941) (467 aa) fasta scores: E(): 2.4e-144, 81.15% id in 467 aa, and to Bacillus subtilis alkaline phosphatase III precursor PhoB or PhoAIII SWALL:PPB3_BACSU (SWALL:P19405) (462 aa) fasta scores: E(): 3.9e-28, 33.99% id in 456 aa; putative alkaline phosphatase 510093 3288503 BF9343_0409 Bacteroides fragilis NCTC 9343 putative alkaline phosphatase YP_210148.1 508693 D 272559 CDS YP_210149.1 60680005 3288384 510152..510487 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3696 SWALL:AAO78801 (EMBL:AE016941) (103 aa) fasta scores: E(): 3.7e-32, 86.4% id in 103 aa, and to Caulobacter crescentus hypothetical protein Cc1859 SWALL:Q9A767 (EMBL:AE005860) (118 aa) fasta scores: E(): 5.4e-16, 51.02% id in 98 aa, and to Methanosarcina acetivorans hypothetical protein Ma2398 SWALL:Q8TN95 (EMBL:AE010931) (98 aa) fasta scores: E(): 3.2e-15, 52.22% id in 90 aa; hypothetical protein 510487 3288384 BF9343_0410 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210149.1 510152 D 272559 CDS YP_210150.1 60680006 3286176 510533..511297 1 NC_003228.3 Similar to Escherichia coli UDP-2,3-diacylglucosamine hydrolase LpxH or B0524 SWALL:LPXH_ECOLI (SWALL:P43341) (240 aa) fasta scores: E(): 3.1e-09, 26.75% id in 228 aa, and to Bacteroides thetaiotaomicron UDP-2,3-diacylglucosamine hydrolase BT3697 SWALL:AAO78802 (EMBL:AE016941) (254 aa) fasta scores: E(): 1.3e-101, 92.52% id in 254 aa, and to Chlorobium tepidum hypothetical protein CT1989 SWALL:Q8KB09 (EMBL:AE012949) (243 aa) fasta scores: E(): 6.1e-24, 34.81% id in 247 aa; putative UDP-2,3-diacylglucosamine hydrolase 511297 3286176 BF9343_0411 Bacteroides fragilis NCTC 9343 putative UDP-2,3-diacylglucosamine hydrolase YP_210150.1 510533 D 272559 CDS YP_210151.1 60680007 3289309 complement(511327..512019) 1 NC_003228.3 Similar to Bacillus subtilis DNA repair protein RadC homolog SWALL:RADC_BACSU (SWALL:Q02170) (231 aa) fasta scores: E(): 4.3e-21, 33.77% id in 225 aa, and to Bacteroides thetaiotaomicron putative DNA repair protein BT3695 SWALL:AAO78800 (EMBL:AE016941) (231 aa) fasta scores: E(): 7.2e-68, 72.48% id in 229 aa, and to Methanosarcina acetivorans DNA repair protein RadC homolog or MA1979 SWALL:RADC_METAC (SWALL:Q8TPD4) (229 aa) fasta scores: E(): 5.2e-25, 32.17% id in 230 aa. Note: Also similar to BF1221 (151 aa) fasta scores: E(): 7.1e-17, 41.221% identity in 131 aa overlap and to BF1780 (148 aa) fasta scores: E(): 2.3e-14, 35.556% identity in 135 aa overlap; putative DNA repair protein 512019 radC1 3289309 radC1 Bacteroides fragilis NCTC 9343 putative DNA repair protein YP_210151.1 511327 R 272559 CDS YP_210152.1 60680008 3286220 complement(512062..513090) 1 NC_003228.3 Similar to Streptococcus pneumoniae glycosyl transferase Cap33fj or Cap37J SWALL:O86893 (EMBL:AJ006986) (323 aa) fasta scores: E(): 3.8e-10, 30.05% id in 183 aa, and to Bacteroides thetaiotaomicron glycosyltransferase BT3694 SWALL:AAO78799 (EMBL:AE016941) (404 aa) fasta scores: E(): 6.3e-93, 74.72% id in 368 aa, and to Methanosarcina mazei dolichyl-phosphate mannose synthase related protein MM1139 SWALL:Q8PXS7 (EMBL:AE013343) (339 aa) fasta scores: E(): 2.3e-17, 26.64% id in 319 aa; putative glycosyltransferase 513090 3286220 BF9343_0413 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_210152.1 512062 R 272559 CDS YP_210153.1 60680009 3285136 complement(513514..514080) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis elongation factor P Efp SWALL:EFP_BACFR (SWALL:P70889) (185 aa) fasta scores: E(): 8.5e-68, 98.4% id in 188 aa, and to Bacteroides thetaiotaomicron elongation factor P Efp or BT3709 SWALL:AAO78814 (EMBL:AE016941) (188 aa) fasta scores: E(): 9.3e-70, 97.87% id in 188 aa, and to Mycobacterium tuberculosis elongation factor P Efp or Rv2534c or MT2609 or MTCY159.22 SWALL:EFP_MYCTU (SWALL:P95019) (187 aa) fasta scores: E(): 9.6e-32, 46.03% id in 189 aa; putative elongation factor P 514080 efp 3285136 efp Bacteroides fragilis NCTC 9343 putative elongation factor P YP_210153.1 513514 R 272559 CDS YP_210154.1 60680010 3288464 514274..514435 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L34 SWALL:RL34_ECOLI (SWALL:P02437) (46 aa) fasta scores: E(): 2.1e-10, 75.55% id in 45 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L34 BT3710 SWALL:AAO78815 (EMBL:AE016941) (53 aa) fasta scores: E(): 3.2e-19, 96.15% id in 52 aa, and to Chlorobium tepidum 50S ribosomal protein L34 RpmH or CT0003 SWALL:RL34_CHLTE (SWALL:Q8KGG5) (53 aa) fasta scores: E(): 8.3e-14, 73.07% id in 52 aa; 50S ribosomal protein L34 514435 3288464 BF9343_0415 Bacteroides fragilis NCTC 9343 50S ribosomal protein L34 YP_210154.1 514274 D 272559 CDS YP_210155.1 60680011 3288376 514647..515288 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3711 SWALL:AAO78816 (EMBL:AE016941) (216 aa) fasta scores: E(): 1e-54, 68.51% id in 216 aa, and to Thermoanaerobacter tengcongensis probable serine/threonine-protein kinase Sps1 or TTE1500 SWALL:PKN1_THETN (SWALL:Q8R9T6) (625 aa) fasta scores: E(): 2.9e-06, 28.12% id in 192 aa, and to Corynebacterium glutamicum probable serine/threonine protein kinase Cgl0041 SWALL:PKN1_CORGL (SWALL:Q8NU98) (646 aa) fasta scores: E(): 2.5e-05, 29.81% id in 161 aa; putative transmembrane PASTA-domain protein 515288 3288376 BF9343_0416 Bacteroides fragilis NCTC 9343 putative transmembrane PASTA-domain protein YP_210155.1 514647 D 272559 CDS YP_210156.1 60680012 3289334 515318..516391 1 NC_003228.3 Similar to Escherichia coli ribosomal large subunit pseudouridine synthase D RluD or SfhB or B2594 SWALL:RLUD_ECOLI (SWALL:P33643) (326 aa) fasta scores: E(): 1.9e-34, 40.97% id in 327 aa, and to Bacteroides thetaiotaomicron ribosomal large subunit pseudouridine synthase D BT3712 SWALL:AAO78817 (EMBL:AE016941) (357 aa) fasta scores: E(): 3.9e-134, 93.52% id in 355 aa, and to Chlorobium vibrioforme hypothetical 36.7 kDa protein in BchI 5'region SWALL:YBC5_CHLVI (SWALL:O50310) (327 aa) fasta scores: E(): 2.4e-53, 47.66% id in 321 aa; ribosomal large subunit pseudouridine synthase 516391 rluD 3289334 rluD Bacteroides fragilis NCTC 9343 ribosomal large subunit pseudouridine synthase YP_210156.1 515318 D 272559 CDS YP_210157.1 60680013 3285190 516388..517362 1 NC_003228.3 Similar to Enterococcus faecalis VanE SWALL:Q93A46 (EMBL:AF430807) (352 aa) fasta scores: E(): 3.3e-28, 31.85% id in 339 aa, and to Bacteroides thetaiotaomicron D-Alanine--D-Alanine ligase BT3713 SWALL:AAO78818 (EMBL:AE016941) (324 aa) fasta scores: E(): 8.6e-113, 88.58% id in 324 aa, and to Neurospora crassa hypothetical protein B19a17.060 SWALL:CAD70534 (EMBL:BX284763) (346 aa) fasta scores: E(): 5.6e-42, 42.51% id in 334 aa; putative D-Alanine-D-Alanine-Ligase 517362 ddlA 3285190 ddlA Bacteroides fragilis NCTC 9343 putative D-Alanine-D-Alanine-Ligase YP_210157.1 516388 D 272559 CDS YP_210158.1 60680014 3288429 517503..518651 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3714 SWALL:AAO78819 (EMBL:AE016941) (382 aa) fasta scores: E(): 3.9e-126, 80.89% id in 382 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4636 SWALL:Q9HVF5 (EMBL:AE004878) (386 aa) fasta scores: E(): 8.4e-32, 32.66% id in 398 aa, and to Pseudomonas putida conserved hypothetical protein PP0756 SWALL:AAN66381 (EMBL:AE016776) (423 aa) fasta scores: E(): 9.4e-31, 32.91% id in 395 aa; hypothetical protein 518651 3288429 BF9343_0419 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210158.1 517503 D 272559 CDS YP_210159.1 60680015 3288356 518648..519343 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3715 SWALL:AAO78820 (EMBL:AE016941) (237 aa) fasta scores: E(): 3.5e-30, 45.02% id in 231 aa; hypothetical protein 519343 3288356 BF9343_0420 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210159.1 518648 D 272559 CDS YP_210160.1 60680016 3286232 519348..519743 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3716 SWALL:AAO78821 (EMBL:AE016941) (130 aa) fasta scores: E(): 9.1e-34, 74.61% id in 130 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1901 SWALL:Q8EQ22 (EMBL:AP004599) (124 aa) fasta scores: E(): 2.9e-07, 34.71% id in 121 aa, and to Shewanella oneidensis GlpE protein or so4672 SWALL:Q8E8J2 (EMBL:AE015899) (101 aa) fasta scores: E(): 3.3e-07, 37.62% id in 101 aa; conserved hypothetical rhodanese-domain protein 519743 3286232 BF9343_0421 Bacteroides fragilis NCTC 9343 conserved hypothetical rhodanese-domain protein YP_210160.1 519348 D 272559 CDS YP_210161.1 60680017 3286257 complement(519842..520798) 1 NC_003228.3 Similar to Pseudomonas aeruginosa ornithine carbamoyltransferase, anabolic ArgF or pa3537 SWALL:OTCA_PSEAE (SWALL:P11724) (304 aa) fasta scores: E(): 1.9e-09, 25.46% id in 326 aa, and to Bacteroides thetaiotaomicron ornithine carbamoyltransferase BT3717 SWALL:Q8A1E9 (EMBL:AE016941) (318 aa) fasta scores: E(): 3.8e-121, 93.37% id in 317 aa, and to Bacteroides forsythus transcarbamylase SWALL:AAO33834 (EMBL:AY184490) (177 aa) fasta scores: E(): 6.9e-48, 76.1% id in 159 aa; putative ornithine carbamoyltransferase 520798 3286257 BF9343_0422 Bacteroides fragilis NCTC 9343 putative ornithine carbamoyltransferase YP_210161.1 519842 R 272559 CDS YP_210162.1 60680018 3288381 complement(520852..521580) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1832 SWALL:AAO76939 (EMBL:AE016933) (215 aa) fasta scores: E(): 5.3e-52, 71.84% id in 206 aa, and to Vibrio parahaemolyticus hypothetical protein vpa1091 SWALL:BAC62434 (EMBL:AP005087) (213 aa) fasta scores: E(): 5.4e-35, 50% id in 216 aa, and to Chlorobium tepidum hypothetical protein CT1863 CT1863 SWALL:Q8KBC6 (EMBL:AE012937) (208 aa) fasta scores: E(): 1.1e-30, 48.69% id in 191 aa; hypothetical protein 521580 3288381 BF9343_0423 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210162.1 520852 R 272559 CDS YP_210163.1 60680019 3288447 complement(521619..522641) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1831 SWALL:AAO76938 (EMBL:AE016933) (348 aa) fasta scores: E(): 6.9e-94, 71.21% id in 330 aa, and to Fusobacterium nucleatum hypothetical protein Fn0336 FN0336 SWALL:Q8RGG2 (EMBL:AE010545) (240 aa) fasta scores: E(): 2.3e-09, 31.25% id in 176 aa; hypothetical protein 522641 3288447 BF9343_0424 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210163.1 521619 R 272559 CDS YP_210164.1 60680020 3287787 complement(523129..524376) 1 NC_003228.3 Similar to Streptococcus pneumoniae gamma-glutamyl phosphate reductase ProA or sp0932 SWALL:PROA_STRPN (SWALL:Q97R94) (420 aa) fasta scores: E(): 1.2e-63, 45.08% id in 417 aa, and to Bacteroides thetaiotaomicron gamma-glutamyl phosphate reductase BT3718 SWALL:AAO78823 (EMBL:AE016941) (417 aa) fasta scores: E(): 2.3e-135, 83.29% id in 413 aa, and to Chlorobium tepidum gamma-glutamyl phosphate reductase ProA or CT1473 SWALL:Q8KCE9 (EMBL:AE012904) (420 aa) fasta scores: E(): 4.4e-94, 61.33% id in 406 aa; putative gamma-glutamyl phosphate reductase 524376 proA 3287787 proA Bacteroides fragilis NCTC 9343 putative gamma-glutamyl phosphate reductase YP_210164.1 523129 R 272559 CDS YP_210165.1 60680021 3287984 complement(524389..525471) 1 NC_003228.3 Similar to Bacillus subtilis glutamate 5-kinase 2 ProJ SWALL:PROJ_BACSU (SWALL:O07509) (371 aa) fasta scores: E(): 1.6e-35, 33.43% id in 338 aa, and to Bacteroides thetaiotaomicron glutamate 5-kinase BT3719 SWALL:Q8A1E7 (EMBL:AE016941) (360 aa) fasta scores: E(): 1.5e-113, 85.27% id in 360 aa, and to Chlorobium tepidum glutamate 5-kinase ProB or CT1457 SWALL:PROB_CHLTE (SWALL:Q8KCG4) (361 aa) fasta scores: E(): 6.7e-58, 49.44% id in 358 aa; putative glutamate kinase 525471 proB 3287984 proB Bacteroides fragilis NCTC 9343 putative glutamate kinase YP_210165.1 524389 R 272559 CDS YP_210166.1 60680022 3288372 complement(525585..525821) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3721 SWALL:AAO78826 (EMBL:AE016941) (77 aa) fasta scores: E(): 5e-12, 53.24% id in 77 aa; hypothetical protein 525821 3288372 BF9343_0427 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210166.1 525585 R 272559 CDS YP_210167.1 60680023 3289274 complement(525898..526740) 1 NC_003228.3 Similar to Bacillus subtilis var. natto glutamate racemase MurI or Glr SWALL:MURI_BACNA (SWALL:O82826) (271 aa) fasta scores: E(): 1.6e-28, 36.99% id in 273 aa, and to Bacteroides thetaiotaomicron glutamate racemase BT3722 SWALL:AAO78827 (EMBL:AE016941) (280 aa) fasta scores: E(): 1.1e-96, 81.07% id in 280 aa, and to Bacillus subtilis glutamate Racemase 1 RacE SWALL:MUI1_BACSU (SWALL:P94556) (272 aa) fasta scores: E(): 1.4e-28, 36.99% id in 273 aa; putative glutamate racemase 526740 murI 3289274 murI Bacteroides fragilis NCTC 9343 putative glutamate racemase YP_210167.1 525898 R 272559 CDS YP_210168.1 60680024 3286183 complement(526843..527352) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein OmpH BT3723 SWALL:Q8A1E3 (EMBL:AE016941) (157 aa) fasta scores: E(): 3.6e-36, 80.89% id in 157 aa, and limited similarity to Chlorobium tepidum outer membrane protein OmpH or CT0254 SWALL:Q8KFR8 (EMBL:AE012804) (183 aa) fasta scores: E(): 0.0046, 28.65% id in 171 aa. Possible alternative start site at codon 15; putative outer membrane protein 527352 3286183 BF9343_0429 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210168.1 526843 R 272559 CDS YP_210169.1 60680025 3286312 complement(527410..527925) 1 NC_003228.3 Similar to Yersinia enterocolitica cationic 19 kDa outer membrane protein precursor OmpH SWALL:OMPH_YEREN (SWALL:P31519) (164 aa) fasta scores: E(): 2.8e-05, 26.58% id in 158 aa, and to Bacteroides thetaiotaomicron cationic outer membrane protein precursor BT3724 SWALL:AAO78829 (EMBL:AE016941) (171 aa) fasta scores: E(): 8.6e-37, 71.34% id in 171 aa, and to Yersinia enterocolitica automembrane protein H SWALL:O05360 (EMBL:Y12468) (164 aa) fasta scores: E(): 1.3e-05, 27.21% id in 158 aa; putative cationic 19 kDa outer membrane protein precursor 527925 ompH 3286312 ompH Bacteroides fragilis NCTC 9343 putative cationic 19 kDa outer membrane protein precursor YP_210169.1 527410 R 272559 CDS YP_210170.1 60680026 3288411 complement(527950..530478) 1 NC_003228.3 Similar to Neisseria meningitidis outer membrane protein Omp85 NMB0182 SWALL:Q9K1H0 (EMBL:AE002375) (797 aa) fasta scores: E(): 9.7e-26, 24.94% id in 870 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein BT3725 SWALL:AAO78830 (EMBL:AE016941) (885 aa) fasta scores: E(): 0, 83.62% id in 849 aa, and to Chlorobium tepidum bacterial surface antigen family protein CT0266 SWALL:Q8KFQ6 (EMBL:AE012805) (836 aa) fasta scores: E(): 1.6e-54, 33.25% id in 854 aa; putative outer membrane protein 530478 3288411 BF9343_0431 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210170.1 527950 R 272559 CDS YP_210171.1 60680027 3288944 complement(530609..531343) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri undecaprenyl pyrophosphate synthetase UppS or Rth or B0174 or C0211 or Z0185 or ECS0176 or SF0164 SWALL:UPPS_ECOLI (SWALL:Q47675) (253 aa) fasta scores: E(): 8e-41, 47.36% id in 228 aa, and to Bacteroides thetaiotaomicron undecaprenyl pyrophosphate synthetase BT3726 SWALL:AAO78831 (EMBL:AE016941) (244 aa) fasta scores: E(): 2.5e-80, 78.27% id in 244 aa, and to Chlorobium tepidum undecaprenyl diphosphate synthase UppS or CT0267 SWALL:Q8KFQ5 (EMBL:AE012805) (265 aa) fasta scores: E(): 2e-49, 52.13% id in 234 aa; putative undecaprenyl pyrophosphate synthetase 531343 uppS 3288944 uppS Bacteroides fragilis NCTC 9343 putative undecaprenyl pyrophosphate synthetase YP_210171.1 530609 R 272559 CDS YP_210172.1 60680028 3286219 complement(531348..532706) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3727 SWALL:AAO78832 (EMBL:AE016941) (493 aa) fasta scores: E(): 4.2e-29, 40.44% id in 497 aa; hypothetical protein 532706 3286219 BF9343_0433 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210172.1 531348 R 272559 CDS YP_210173.1 60680029 3288423 complement(532845..533867) 1 NC_003228.3 Similar to Bacillus amyloliquefaciens riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase] RibD or RibG SWALL:RIBD_BACAM (SWALL:P70814) (371 aa) fasta scores: E(): 1.7e-35, 37.53% id in 325 aa, and to Bacteroides thetaiotaomicron riboflavin biosynthesis protein RibD BT3728 SWALL:Q8A1D8 (EMBL:AE016942) (339 aa) fasta scores: E(): 2.8e-101, 74.4% id in 336 aa, and to Chlorobium tepidum riboflavin biosynthesis protein RibD or CT0747 SWALL:Q8KEE2 (EMBL:AE012844) (373 aa) fasta scores: E(): 6.7e-48, 42.07% id in 347 aa; putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase 533867 3288423 BF9343_0434 Bacteroides fragilis NCTC 9343 putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase YP_210173.1 532845 R 272559 CDS YP_210174.1 60680030 3288351 533939..534775 1 NC_003228.3 Similar to Porphyromonas gingivalis protoporphyrinogen oxidase HemK SWALL:Q9LBR0 (EMBL:AB037921) (293 aa) fasta scores: E(): 2.5e-30, 41.03% id in 290 aa, and to Bacteroides thetaiotaomicron putative protoporphyrinogen oxidase BT3729 SWALL:AAO78834 (EMBL:AE016942) (278 aa) fasta scores: E(): 1.9e-69, 66.18% id in 278 aa, and to Streptococcus mutans putative protoporphyrinogen oxidase Hemk or SMU.1084 SWALL:Q8DU65 (EMBL:AE014946) (278 aa) fasta scores: E(): 2.4e-30, 42.08% id in 259 aa; putative protoporphyrinogen oxidase 534775 3288351 BF9343_0435 Bacteroides fragilis NCTC 9343 putative protoporphyrinogen oxidase YP_210174.1 533939 D 272559 CDS YP_210175.1 60680031 3288476 534772..535236 1 NC_003228.3 Limited similarity to Pseudomonas aeruginosa regulatory protein RecX or PA3616 SWALL:RECX_PSEAE (SWALL:P37860) (153 aa) fasta scores: E(): 0.00014, 29.13% id in 127 aa, and to Bacteroides thetaiotaomicron putative regulatory protein BT3730 SWALL:AAO78835 (EMBL:AE016942) (160 aa) fasta scores: E(): 9.5e-46, 74.17% id in 151 aa, and to Clostridium tetani transcriptional regulatory protein CTC02337 SWALL:AAO36813 (EMBL:AE015944) (216 aa) fasta scores: E(): 1.1e-06, 30.89% id in 123 aa; putative transcriptional regulatory protein 535236 3288476 BF9343_0436 Bacteroides fragilis NCTC 9343 putative transcriptional regulatory protein YP_210175.1 534772 D 272559 CDS YP_210176.1 60680032 3289317 535332..535970 1 NC_003228.3 Similar to Bacillus caldolyticus orotate phosphoribosyltransferase PyrE SWALL:PYRE_BACCL (SWALL:P46534) (206 aa) fasta scores: E(): 3.7e-36, 51% id in 200 aa, and to Bacteroides thetaiotaomicron orotate phosphoribosyltransferase BT3731 SWALL:AAO78836 (EMBL:AE016942) (212 aa) fasta scores: E(): 9.1e-77, 96.22% id in 212 aa, and to Listeria innocua orotate phosphoribosyltransferase PyrE or LIN1945 SWALL:PYRE_LISIN (SWALL:Q92AH7) (209 aa) fasta scores: E(): 3.4e-39, 53.39% id in 206 aa; putative orotate phosphoribosyltransferase 535970 pyrE 3289317 pyrE Bacteroides fragilis NCTC 9343 putative orotate phosphoribosyltransferase YP_210176.1 535332 D 272559 CDS YP_210177.1 60680033 3286194 536070..536480 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3732 SWALL:AAO78837 (EMBL:AE016942) (136 aa) fasta scores: E(): 6.4e-41, 77.2% id in 136 aa; putative conserved hypothetical protein 536480 3286194 BF9343_0438 Bacteroides fragilis NCTC 9343 putative conserved hypothetical protein YP_210177.1 536070 D 272559 CDS YP_210178.1 60680034 3289115 536486..537829 1 NC_003228.3 Similar to Escherichia coli argininosuccinate lyase ArgH or B3960 SWALL:ARLY_ECOLI (SWALL:P11447) (457 aa) fasta scores: E(): 9.3e-42, 35.99% id in 389 aa, and to Bacteroides thetaiotaomicron argininosuccinate lyase BT3733 SWALL:AAO78838 (EMBL:AE016942) (446 aa) fasta scores: E(): 3.5e-169, 94.61% id in 446 aa, and to Xylella fastidiosa argininosuccinate lyase ArgH or PD0295 SWALL:AAO28180 (EMBL:AE012554) (445 aa) fasta scores: E(): 7.1e-47, 34.74% id in 426 aa; putative argininosuccinate lyase 537829 argH 3289115 argH Bacteroides fragilis NCTC 9343 putative argininosuccinate lyase YP_210178.1 536486 D 272559 CDS YP_210179.1 60680035 3288341 complement(538014..539741) 1 NC_003228.3 Similar to Lactococcus lactis bacteriophage TP901-1 Integrase Int SWALL:Q38184 (EMBL:X85213) (485 aa) fasta scores: E(): 1.1e-09, 23.29% id in 468 aa, and to Streptococcus pneumoniae low similarity to site-specific recombinase CcrB or SPR0942 SWALL:Q8DPY2 (EMBL:AE008466) (559 aa) fasta scores: E(): 4.3e-12, 25.48% id in 518 aa, and to Streptococcus pneumoniae site-specific recombinase, resolvase family SP1040 SWALL:Q97R01 (EMBL:AE007406) (559 aa) fasta scores: E(): 2e-11, 26.18% id in 485 aa; putative bacteriophage resolvase/recombinase 539741 3288341 BF9343_0440 Bacteroides fragilis NCTC 9343 putative bacteriophage resolvase/recombinase YP_210179.1 538014 R 272559 CDS YP_210180.1 60680036 3288421 complement(541246..541536) 1 NC_003228.3 Similar to Bacillus subtilis SinR protein or Sin or FlaD SWALL:SINR_BACSU (SWALL:P06533) (111 aa) fasta scores: E(): 0.00078, 33.78% id in 74 aa, and to Bacillus licheniformis SinR protein or Sin or FlaL SWALL:SINR_BACLI (SWALL:P22753) (111 aa) fasta scores: E(): 0.00091, 33.78% id in 74 aa; putative regulatory protein 541536 3288421 BF9343_0443 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_210180.1 541246 R 272559 CDS YP_210181.1 60680037 3288378 541708..542010 1 NC_003228.3 no significant database matches; hypothetical protein 542010 3288378 BF9343_0444 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210181.1 541708 D 272559 CDS YP_210182.1 60680038 3288338 542119..542706 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron integrase BT0947 SWALL:AAO76054 (EMBL:AE016929) (195 aa) fasta scores: E(): 1.1e-40, 56.92% id in 195 aa, and to Bacteroides thetaiotaomicron integrase BT2986 SWALL:AAO78092 (EMBL:AE016938) (195 aa) fasta scores: E(): 3.1e-38, 51.28% id in 195 aa, and to Bacteriophage Phi3626 putative recombinase SWALL:Q8SBK8 (EMBL:AY082070) (181 aa) fasta scores: E(): 4.8e-08, 30.53% id in 167 aa; putative integrase/recombinase 542706 3288338 BF9343_0445 Bacteroides fragilis NCTC 9343 putative integrase/recombinase YP_210182.1 542119 D 272559 CDS YP_210183.1 60680039 3285866 542992..544479 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TonB BT2059 SWALL:AAO77166 (EMBL:AE016934) (227 aa) fasta scores: E(): 1.4e-10, 41.93% id in 93 aa, and to Bacteroides thetaiotaomicron TonB BT0813 SWALL:AAO75920 (EMBL:AE016929) (443 aa) fasta scores: E(): 1.7e-09, 33.33% id in 150 aa, and to Bacteroides thetaiotaomicron TonB BT3673 SWALL:AAO78778 (EMBL:AE016941) (283 aa) fasta scores: E(): 1.3e-08, 38.71% id in 93 aa; putative TonB-dependent receptor 544479 3285866 BF9343_0446 Bacteroides fragilis NCTC 9343 putative TonB-dependent receptor YP_210183.1 542992 D 272559 CDS YP_210184.1 60680040 3285942 complement(544604..545950) 1 NC_003228.3 Limited similarity to Amsacta moorei entomopoxvirus Amv209 SWALL:Q9EMJ7 (EMBL:AF250284) (463 aa) fasta scores: E(): 0.0013, 23.26% id in 361 aa, and to Bacteriophage P27 hypothetical 48.6 kDa protein SWALL:Q9MC01 (EMBL:AJ249351) (409 aa) fasta scores: E(): 0.0021, 34% id in 100 aa; putative phage-derived protein 545950 3285942 BF9343_0447 Bacteroides fragilis NCTC 9343 putative phage-derived protein YP_210184.1 544604 R 272559 CDS YP_210185.1 60680041 3288405 complement(546052..546210) 1 NC_003228.3 no significant database matches; hypothetical protein 546210 3288405 BF9343_0448 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210185.1 546052 R 272559 CDS YP_210186.1 60680042 3288389 complement(546241..546492) 1 NC_003228.3 no significant database matches; putative transmembrane protein 546492 3288389 BF9343_0449 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210186.1 546241 R 272559 CDS YP_210187.1 60680043 3288380 546522..547664 1 NC_003228.3 no significant database matches; hypothetical protein 547664 3288380 BF9343_0450 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210187.1 546522 D 272559 CDS YP_210188.1 60680044 3288364 complement(547909..548805) 1 NC_003228.3 Similar to N-terminus of Clostridium acetobutylicum CspA protein SWALL:Q45819 (EMBL:Z37723) (590 aa) fasta scores: E(): 0.29, 28.4% id in 176 aa; hypothetical protein 548805 3288364 BF9343_0451 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210188.1 547909 R 272559 CDS YP_210189.1 60680045 3285917 complement(548798..548989) 1 NC_003228.3 no significant database matches; hypothetical protein 548989 3285917 BF9343_0452 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210189.1 548798 R 272559 CDS YP_210190.1 60680046 3288456 complement(549250..550044) 1 NC_003228.3 Similar to Borrelia burgdorferi hypothetical protein Bb0600 SWALL:O51546 (EMBL:AE001161) (518 aa) fasta scores: E(): 0.17, 27.85% id in 219 aa; hypothetical protein 550044 3288456 BF9343_0453 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210190.1 549250 R 272559 CDS YP_210191.1 60680047 3286272 551180..553495 1 NC_003228.3 Similar to Clostridium perfringens hypothetical protein CPE1875 SWALL:Q8XJ86 (EMBL:AP003192) (1479 aa) fasta scores: E(): 5.2e-18, 22.98% id in 509 aa, and to Streptococcus pneumoniae hypothetical protein Sp1654 SWALL:Q97PG6 (EMBL:AE007459) (803 aa) fasta scores: E(): 9.6e-12, 23.26% id in 460 aa, and to Streptococcus pneumoniae conserved hypothetical protein spr1498 SWALL:Q8DNW5 (EMBL:AE008518) (803 aa) fasta scores: E(): 1.5e-11, 23.51% id in 455 aa; hypothetical protein 553495 3286272 BF9343_0454 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210191.1 551180 D 272559 CDS YP_210192.1 60680048 3288146 complement(553635..553835) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3747 SWALL:AAO78852 (EMBL:AE016942) (66 aa) fasta scores: E(): 7.4e-19, 77.27% id in 66 aa; hypothetical protein 553835 3288146 BF9343_0455 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210192.1 553635 R 272559 CDS YP_210193.1 60680049 3286261 complement(553984..555639) 1 NC_003228.3 Similar to Homo sapiens middle-chain Acyl-CoA synthetase1 MacS1 or MacS SWALL:Q96A20 (EMBL:AB062503) (577 aa) fasta scores: E(): 4.7e-70, 39.02% id in 533 aa, and to Bacteroides thetaiotaomicron acetyl-coenzyme A synthetase BT3755 SWALL:AAO78860 (EMBL:AE016942) (551 aa) fasta scores: E(): 1.6e-207, 88.92% id in 551 aa, and to Methanosarcina mazei putative acetyl-CoA synthetase MM3180 SWALL:Q8PSA2 (EMBL:AE013576) (560 aa) fasta scores: E(): 5.6e-141, 60.25% id in 556 aa; putative Acyl-CoA synthetase 555639 3286261 BF9343_0456 Bacteroides fragilis NCTC 9343 putative Acyl-CoA synthetase YP_210193.1 553984 R 272559 CDS YP_210194.1 60680050 3288382 complement(555657..556211) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT3756 SWALL:AAO78861 (EMBL:AE016942) (184 aa) fasta scores: E(): 8e-60, 86.95% id in 184 aa, and to Methanosarcina mazei transcriptional regulator MM3179 SWALL:Q8PSA3 (EMBL:AE013576) (186 aa) fasta scores: E(): 3.7e-29, 47.28% id in 184 aa, and to Methanobacterium thermoautotrophicum conserved protein MTH700 SWALL:O26796 (EMBL:AE000849) (182 aa) fasta scores: E(): 5.6e-29, 48.37% id in 184 aa; putative regulatory protein 556211 3288382 BF9343_0457 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_210194.1 555657 R 272559 CDS YP_210195.1 60680051 3288361 complement(556271..557044) 1 NC_003228.3 Similar to Clostridium sticklandii pyrroline-5-carboxylate reductase ProC SWALL:O87725 (EMBL:AJ010739) (266 aa) fasta scores: E(): 6.3e-22, 37.59% id in 258 aa, and to Bacteroides thetaiotaomicron pyrroline-5-carboxylate reductase BT3757 SWALL:AAO78862 (EMBL:AE016942) (257 aa) fasta scores: E(): 2.8e-73, 79.76% id in 257 aa, and to Bacteroides thetaiotaomicron pyrroline-5-carboxylate reductase BT1902 SWALL:AAO77009 (EMBL:AE016933) (266 aa) fasta scores: E(): 2.2e-46, 55.85% id in 256 aa; putative pyrroline-5-carboxylate reductase 557044 3288361 BF9343_0458 Bacteroides fragilis NCTC 9343 putative pyrroline-5-carboxylate reductase YP_210195.1 556271 R 272559 CDS YP_210196.1 60680052 3289094 complement(557157..558281) 1 NC_003228.3 Similar to Bacillus subtilis acetylornithine aminotransferase ArgD SWALL:ARGD_BACSU (SWALL:P36839) (385 aa) fasta scores: E(): 2.6e-46, 40.47% id in 383 aa, and to Bacteroides thetaiotaomicron acetylornithine aminotransferase BT3758 SWALL:AAO78863 (EMBL:AE016942) (373 aa) fasta scores: E(): 3e-126, 87.13% id in 373 aa, and to Thermoanaerobacter tengcongensis acetylornithine aminotransferase ArgD or TTE2495 SWALL:ARGD_THETN (SWALL:Q8R7C1) (393 aa) fasta scores: E(): 1.3e-47, 41.23% id in 388 aa; putative acetylornithine aminotransferase 558281 argD 3289094 argD Bacteroides fragilis NCTC 9343 putative acetylornithine aminotransferase YP_210196.1 557157 R 272559 CDS YP_210197.1 60680053 3289109 complement(558291..559259) 1 NC_003228.3 Similar to Bacillus amyloliquefaciens acetylglutamyl phosphate reductase ArgC SWALL:AAO72303 (EMBL:AY248750) (344 aa) fasta scores: E(): 4.2e-24, 36.47% id in 340 aa, and to Bacteroides thetaiotaomicron N-acetyl-gamma-glutamyl-phosphate reductase BT3759 SWALL:AAO78864 (EMBL:AE016942) (322 aa) fasta scores: E(): 8.1e-116, 93.78% id in 322 aa, and to Methanococcus jannaschii N-acetyl-gamma-glutamyl-phosphate reductase ArgC or mj1096 SWALL:ARGC_METJA (SWALL:Q58496) (341 aa) fasta scores: E(): 1.7e-26, 38.93% id in 339 aa; putative acetylglutamyl phosphate reductase 559259 argC 3289109 argC Bacteroides fragilis NCTC 9343 putative acetylglutamyl phosphate reductase YP_210197.1 558291 R 272559 CDS YP_210198.1 60680054 3289096 complement(559256..560461) 1 NC_003228.3 Similar to Staphylococcus epidermidis argininosuccinate synthase ArgG or se0657 SWALL:Q8CPU3 (EMBL:AE016746) (401 aa) fasta scores: E(): 1.7e-28, 29.62% id in 395 aa, and to Bacteroides thetaiotaomicron argininosuccinate synthase BT3760 SWALL:AAO78865 (EMBL:AE016942) (402 aa) fasta scores: E(): 5.9e-144, 93.5% id in 400 aa, and to Methanococcus jannaschii argininosuccinate synthase ArgG or mj0429 SWALL:ASSY_METJA (SWALL:Q60174) (395 aa) fasta scores: E(): 7.7e-38, 33.24% id in 397 aa; putative argininosuccinate synthase 560461 argG 3289096 argG Bacteroides fragilis NCTC 9343 putative argininosuccinate synthase YP_210198.1 559256 R 272559 CDS YP_210199.1 60680055 3288387 complement(560475..561053) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3761 SWALL:AAO78866 (EMBL:AE016942) (192 aa) fasta scores: E(): 4.3e-73, 95.83% id in 192 aa; putative acetyltransferase 561053 3288387 BF9343_0462 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_210199.1 560475 R 272559 CDS YP_210200.1 60680056 3289122 complement(561087..561560) 1 NC_003228.3 Similar to Bacillus subtilis arginine repressor ArgR or AhrC SWALL:ARGR_BACSU (SWALL:P17893) (149 aa) fasta scores: E(): 1.7e-13, 36.3% id in 146 aa, and to Bacteroides thetaiotaomicron arginine repressor, transcriptional regulator of arginine metabolism BT3762 SWALL:Q8A1A4 (EMBL:AE016942) (157 aa) fasta scores: E(): 7.1e-46, 87.17% id in 156 aa, and to Staphylococcus epidermidis arginine repressor se1201 SWALL:Q8CP40 (EMBL:AE016748) (153 aa) fasta scores: E(): 1.3e-13, 39.7% id in 136 aa; putative arginine repressor 561560 argR 3289122 argR Bacteroides fragilis NCTC 9343 putative arginine repressor YP_210200.1 561087 R 272559 CDS YP_210201.1 60680057 3288394 562485..563720 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT2574 SWALL:AAO77681 (EMBL:AE016936) (419 aa) fasta scores: E(): 1e-91, 56.72% id in 409 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT2540 SWALL:AAO77647 (EMBL:AE016936) (391 aa) fasta scores: E(): 2.6e-60, 45.04% id in 373 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1833 SWALL:AAO76940 (EMBL:AE016933) (882 aa) fasta scores: E(): 1.7e-44, 47.27% id in 294 aa; putative two-component histidine sensor kinase 563720 3288394 BF9343_0464 Bacteroides fragilis NCTC 9343 putative two-component histidine sensor kinase YP_210201.1 562485 D 272559 CDS YP_210202.1 60680058 3285918 complement(563813..565411) 1 NC_003228.3 Similar to Listeria monocytogenes glutamate:gamma-aminobutyrate antiporter GadC SWALL:Q9EYX0 (EMBL:AF309077) (507 aa) fasta scores: E(): 3e-45, 33.47% id in 475 aa, and to Bacteroides thetaiotaomicron glutamate/gamma-aminobutyrate antiporter BT2573 SWALL:AAO77680 (EMBL:AE016936) (570 aa) fasta scores: E(): 4.1e-167, 84.58% id in 558 aa, and to Brucella melitensis glutamate/gamma-aminobutyrate antiporter Bmeii0909 SWALL:Q8YBJ1 (EMBL:AE009724) (510 aa) fasta scores: E(): 2.8e-101, 56.59% id in 493 aa; putative glutamate:gamma-aminobutyrate antiporter 565411 3285918 BF9343_0465 Bacteroides fragilis NCTC 9343 putative glutamate:gamma-aminobutyrate antiporter YP_210202.1 563813 R 272559 CDS YP_210203.1 60680059 3288442 565628..566365 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative potassium channel subunit BT2572 SWALL:AAO77679 (EMBL:AE016936) (243 aa) fasta scores: E(): 5.4e-78, 81.81% id in 242 aa, and to Enterococcus faecalis ion transporter, putative ef2854 SWALL:AAO82546 (EMBL:AE016955) (242 aa) fasta scores: E(): 2.1e-08, 28.12% id in 224 aa, and to Shewanella oneidensis ion transporter so3768 SWALL:Q8EAX3 (EMBL:AE015810) (274 aa) fasta scores: E(): 1.4e-07, 21.99% id in 241 aa; putative ion transport protein 566365 3288442 BF9343_0466 Bacteroides fragilis NCTC 9343 putative ion transport protein YP_210203.1 565628 D 272559 CDS YP_210204.1 60680060 3288402 complement(566457..567458) 1 NC_003228.3 Similar to Thermoplasma acidophilum malate dehydrogenase Mdh or ta0952 SWALL:MDH_THEAC (SWALL:Q9HJL5) (325 aa) fasta scores: E(): 1.6e-17, 28.7% id in 331 aa, and to Bacteroides thetaiotaomicron malate dehydrogenase BT2510 SWALL:AAO77617 (EMBL:AE016936) (333 aa) fasta scores: E(): 1.6e-110, 85.58% id in 333 aa, and to Thermoplasma volcanium malate dehydrogenase tv1121 or tvg1151701 SWALL:Q979N9 (EMBL:AP000995) (325 aa) fasta scores: E(): 1e-17, 29.65% id in 317 aa; putative malate dehydrogenase 567458 3288402 BF9343_0467 Bacteroides fragilis NCTC 9343 putative malate dehydrogenase YP_210204.1 566457 R 272559 CDS YP_210205.1 60680061 3285887 567670..568518 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2505 SWALL:AAO77612 (EMBL:AE016936) (279 aa) fasta scores: E(): 2.7e-89, 83.33% id in 276 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1116 SWALL:Q9I4L9 (EMBL:AE004542) (279 aa) fasta scores: E(): 5e-49, 50.36% id in 276 aa, and to Shewanella oneidensis conserved hypothetical protein so1868 SWALL:Q8EFU7 (EMBL:AE015630) (279 aa) fasta scores: E(): 8.8e-49, 47.08% id in 274 aa; hypothetical protein 568518 3285887 BF9343_0468 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210205.1 567670 D 272559 CDS YP_210206.1 60680062 3288388 568621..569274 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2504 SWALL:AAO77611 (EMBL:AE016936) (226 aa) fasta scores: E(): 4e-17, 44.1% id in 229 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2503 SWALL:AAO77610 (EMBL:AE016936) (338 aa) fasta scores: E(): 2.3e-11, 36.36% id in 110 aa; hypothetical protein 569274 3288388 BF9343_0469 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210206.1 568621 D 272559 CDS YP_210207.1 60680063 3288445 569289..569957 1 NC_003228.3 Similar to C-terminus of Bacteroides thetaiotaomicron hypothetical protein BT2504 SWALL:AAO77611 (EMBL:AE016936) (226 aa) fasta scores: E(): 2.7e-11, 40% id in 95 aa, and to entire protein of Bacteroides thetaiotaomicron hypothetical protein BT2503 SWALL:AAO77610 (EMBL:AE016936) (338 aa) fasta scores: E(): 9.7e-09, 35.52% id in 228 aa; hypothetical protein 569957 3288445 BF9343_0470 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210207.1 569289 D 272559 CDS YP_210208.1 60680064 3285943 569967..570830 1 NC_003228.3 Similar to N-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT2502 SWALL:AAO77609 (EMBL:AE016936) (399 aa) fasta scores: E(): 7.2e-55, 52.75% id in 309 aa; hypothetical protein 570830 3285943 BF9343_0471 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210208.1 569967 D 272559 CDS YP_210209.1 60680065 3286059 complement(570950..572872) 1 NC_003228.3 C-terminus is similar to the N-terminus of Acinetobacter calcoaceticus monofunctional biosynthetic peptidoglycan transglycosylase MtgA SWALL:MTGA_ACICA (SWALL:O24849) (224 aa) fasta scores: E(): 1.2e-17, 38.65% id in 163 aa, and to entire protein of Bacteroides thetaiotaomicron penicillin-binding protein BT2501 SWALL:AAO77608 (EMBL:AE016936) (649 aa) fasta scores: E(): 3.3e-173, 67.14% id in 633 aa; putative bioynthetic peptidoglycan transglycosylase 572872 3286059 BF9343_0472 Bacteroides fragilis NCTC 9343 putative bioynthetic peptidoglycan transglycosylase YP_210209.1 570950 R 272559 CDS YP_210210.1 60680066 3288443 572997..574286 1 NC_003228.3 C-terminal domain V of MutS is similar to C-terminal domain V of MutS Staphylococcus aureus MutS protein SWALL:Q932P9 (EMBL:AJ296342) (872 aa) fasta scores: E(): 1.5e-14, 30.04% id in 233 aa, and to C-terminal domain V of MutS from Clostridium acetobutylicum mismatch repair protein MutS-like ATPase CAC3563 SWALL:Q97DB6 (EMBL:AE007853) (577 aa) fasta scores: E(): 1e-16, 26.88% id in 305 aa, and to C-terminal domain V of MutS from Clostridium perfringens MutS-related protein CPE2156 SWALL:Q8XIG4 (EMBL:AP003193) (595 aa) fasta scores: E(): 1e-16, 24.51% id in 310 aa; putative mismatch repair-like protein 574286 3288443 BF9343_0473 Bacteroides fragilis NCTC 9343 putative mismatch repair-like protein YP_210210.1 572997 D 272559 CDS YP_210211.1 60680067 3288441 574365..574925 1 NC_003228.3 no significant database matches; hypothetical protein 574925 3288441 BF9343_0474 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210211.1 574365 D 272559 CDS YP_210212.1 60680068 3288439 complement(575099..577267) 1 NC_003228.3 Similar to Bacillus stearothermophilus alpha-galactosidase AgaB SWALL:Q934H7 (EMBL:AY013287) (729 aa) fasta scores: E(): 1.9e-81, 38.21% id in 594 aa, and to Bacteroides thetaiotaomicron alpha-galactosidase BT2851 SWALL:AAO77957 (EMBL:AE016937) (721 aa) fasta scores: E(): 4.5e-142, 48.75% id in 724 aa, and to Bacteroides thetaiotaomicron alpha-galactosidase BT3131 SWALL:AAO78237 (EMBL:AE016939) (718 aa) fasta scores: E(): 1e-136, 46.28% id in 726 aa; putative melibiase 577267 3288439 BF9343_0475 Bacteroides fragilis NCTC 9343 putative melibiase YP_210212.1 575099 R 272559 CDS YP_210213.1 60680069 3288418 complement(577381..579618) 1 NC_003228.3 Similar to Sulfolobus solfataricus alpha-xylosidase XylS or SSO3022 SWALL:XYLS_SULSO (SWALL:Q9P999) (731 aa) fasta scores: E(): 5.6e-33, 24.48% id in 531 aa, and to Streptococcus mutans putative alpha-glucosidase, glycosyl hydrolase SMU.104 SWALL:Q8DWF5 (EMBL:AE014862) (731 aa) fasta scores: E(): 3.1e-75, 32.29% id in 675 aa, and to Bifidobacterium longum probable pentosidase or hexosidase bl1334 SWALL:Q8G4P4 (EMBL:AE014762) (880 aa) fasta scores: E(): 3.7e-75, 32.48% id in 711 aa; putative glycosyl hydrolase, alpha-xylosidase 579618 3288418 BF9343_0476 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase, alpha-xylosidase YP_210213.1 577381 R 272559 CDS YP_210214.1 60680070 3285921 complement(579726..581441) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2365 SWALL:AAO77472 (EMBL:AE016935) (497 aa) fasta scores: E(): 7.2e-16, 27.07% id in 591 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1553 SWALL:AAO76660 (EMBL:AE016932) (442 aa) fasta scores: E(): 4e-13, 28.27% id in 382 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2269 SWALL:AAO77376 (EMBL:AE016935) (469 aa) fasta scores: E(): 1.9e-11, 27.42% id in 350 aa; putative outer membrane protein 581441 3285921 BF9343_0477 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210214.1 579726 R 272559 CDS YP_210215.1 60680071 3285904 complement(581458..584628) 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 9.7e-38, 29.79% id in 1027 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3090 SWALL:AAO78196 (EMBL:AE016938) (999 aa) fasta scores: E(): 6.2e-54, 30.46% id in 1011 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2364 SWALL:AAO77471 (EMBL:AE016935) (1025 aa) fasta scores: E(): 2.2e-53, 30.56% id in 1024 aa; putative outer membrane protein 584628 3285904 BF9343_0478 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210215.1 581458 R 272559 CDS YP_210216.1 60680072 3288392 complement(584837..585766) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 1.9e-15, 26.08% id in 299 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2462 SWALL:AAO77569 (EMBL:AE016936) (311 aa) fasta scores: E(): 8.8e-48, 43.04% id in 309 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2561 SWALL:AAO77668 (EMBL:AE016936) (312 aa) fasta scores: E(): 8.5e-37, 38.01% id in 313 aa; putative anti-sigma factor 585766 3288392 BF9343_0479 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210216.1 584837 R 272559 CDS YP_210217.1 60680073 3288348 complement(585860..586420) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region sigma factor RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 1.6e-08, 31.28% id in 179 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT2463 SWALL:AAO77570 (EMBL:AE016936) (189 aa) fasta scores: E(): 1.6e-36, 58.98% id in 178 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3748 SWALL:AAO78853 (EMBL:AE016942) (180 aa) fasta scores: E(): 1.3e-28, 50.85% id in 175 aa; putative ECF-type RNA polymerase sigma factor 586420 3288348 BF9343_0480 Bacteroides fragilis NCTC 9343 putative ECF-type RNA polymerase sigma factor YP_210217.1 585860 R 272559 CDS YP_210218.1 60680074 3288419 complement(586459..586620) 1 NC_003228.3 hypothetical protein 586620 3288419 BF9343_0481 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210218.1 586459 R 272559 CDS YP_210219.1 60680075 3288759 complement(586672..586821) 1 NC_003228.3 hypothetical protein 586821 3288759 BF9343_0482 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210219.1 586672 R 272559 CDS YP_210220.1 60680076 3285889 complement(586866..588197) 1 NC_003228.3 Similar to Proteus mirabilis metalloprotease transporter component ZapD SWALL:O85377 (EMBL:AF064762) (449 aa) fasta scores: E(): 3.6e-12, 24.57% id in 407 aa, and to Bacteroides thetaiotaomicron putative outer membrane efflux protein BT2498 SWALL:AAO77605 (EMBL:AE016936) (445 aa) fasta scores: E(): 1.7e-115, 73.07% id in 442 aa, and to Porphyromonas gingivalis immunoreactive 51kd antigen PG52 SWALL:Q9S3R4 (EMBL:AF175719) (455 aa) fasta scores: E(): 2.2e-42, 31.85% id in 452 aa; putative outer membrane transport/efflux protein 588197 3285889 BF9343_0483 Bacteroides fragilis NCTC 9343 putative outer membrane transport/efflux protein YP_210220.1 586866 R 272559 CDS YP_210221.1 60680077 3285915 complement(588237..589337) 1 NC_003228.3 Similar to Yersinia pestis probable macrolide-specific efflux protein MacA precursor or YPO1364 or Y2814 SWALL:MACA_YERPE (SWALL:P58411) (371 aa) fasta scores: E(): 1.5e-11, 21.88% id in 361 aa, and to Bacteroides thetaiotaomicron membrane fusion efflux protein BT2497 SWALL:AAO77604 (EMBL:AE016936) (366 aa) fasta scores: E(): 1.9e-100, 81.96% id in 366 aa, and to Chlorobium tepidum membrane fusion efflux protein, putative CT1348 SWALL:Q8KCR5 (EMBL:AE012893) (422 aa) fasta scores: E(): 1e-15, 25.38% id in 394 aa; putative transport/efflux component protein 589337 3285915 BF9343_0484 Bacteroides fragilis NCTC 9343 putative transport/efflux component protein YP_210221.1 588237 R 272559 CDS YP_210222.1 60680078 3288758 complement(589446..590696) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter, ATP-binding protein BT2496 SWALL:AAO77603 (EMBL:AE016936) (413 aa) fasta scores: E(): 1.4e-136, 82.16% id in 415 aa, and to Bacteroides thetaiotaomicron ABC transporter, putative permease BT2495 SWALL:AAO77602 (EMBL:AE016936) (419 aa) fasta scores: E(): 3.5e-43, 34.83% id in 422 aa, and to Agrobacterium tumefaciens hypothetical protein atu1817 atu1817 or agr_c_3336 SWALL:Q8UEE3 (EMBL:AE009136) (420 aa) fasta scores: E(): 1.8e-29, 28.85% id in 409 aa; putative ATP-binding component of ABC transporter 590696 3288758 BF9343_0485 Bacteroides fragilis NCTC 9343 putative ATP-binding component of ABC transporter YP_210222.1 589446 R 272559 CDS YP_210223.1 60680079 3288681 complement(590693..591952) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, putative permease BT2495 SWALL:AAO77602 (EMBL:AE016936) (419 aa) fasta scores: E(): 9.1e-130, 79.23% id in 419 aa, and to Bacteroides thetaiotaomicron putative ABC transporter, ATP-binding protein BT2496 SWALL:AAO77603 (EMBL:AE016936) (413 aa) fasta scores: E(): 4.5e-43, 37.58% id in 423 aa, and to Anabaena sp. hypothetical protein Alr0446 SWALL:Q8YZL1 (EMBL:AP003582) (423 aa) fasta scores: E(): 3.5e-20, 29.38% id in 422 aa; putative ABC transporter 591952 3288681 BF9343_0486 Bacteroides fragilis NCTC 9343 putative ABC transporter YP_210223.1 590693 R 272559 CDS YP_210224.1 60680080 3288763 complement(591967..592683) 1 NC_003228.3 Similar to Staphylococcus epidermidis ABC transporter ATP-binding protein se2406 SWALL:Q8CQM3 (EMBL:AE016752) (228 aa) fasta scores: E(): 6.2e-35, 49.34% id in 229 aa, and to Bacteroides thetaiotaomicron ABC transporter, ATP-binding protein BT2494 SWALL:AAO77601 (EMBL:AE016936) (238 aa) fasta scores: E(): 1.5e-77, 93.27% id in 238 aa, and to Streptococcus pneumoniae ABC transporter, ATP-binding protein sp0786 SWALL:Q97RL8 (EMBL:AE007385) (233 aa) fasta scores: E(): 3e-39, 54.04% id in 235 aa; putative ABC transporter ATP-binding protein 592683 3288763 BF9343_0487 Bacteroides fragilis NCTC 9343 putative ABC transporter ATP-binding protein YP_210224.1 591967 R 272559 CDS YP_210225.1 60680081 3288714 592862..593842 1 NC_003228.3 Similar to Prevotella bryantii glucomannokinase Gmk SWALL:Q9AGU1 (EMBL:AF326962) (182 aa) fasta scores: E(): 2.2e-39, 67.58% id in 182 aa, and to Bacteroides thetaiotaomicron ROK family transcriptional repressor, with glucokinase domain BT2493 SWALL:AAO77600 (EMBL:AE016936) (326 aa) fasta scores: E(): 5.3e-108, 91.71% id in 326 aa, and to Clostridium acetobutylicum transcriptional regulators of NagC/XylR family CAC2613 SWALL:Q97FW3 (EMBL:AE007758) (313 aa) fasta scores: E(): 9.9e-33, 35.96% id in 317 aa; putative ROK family transcriptional repressor 593842 3288714 BF9343_0488 Bacteroides fragilis NCTC 9343 putative ROK family transcriptional repressor YP_210225.1 592862 D 272559 CDS YP_210226.1 60680082 3285926 complement(594597..594950) 1 NC_003228.3 Similar to Staphylococcus epidermidis 50S ribosomal protein L19 se0916 SWALL:Q8CSU9 (EMBL:AE016747) (116 aa) fasta scores: E(): 5.1e-19, 59.79% id in 97 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L19 BT2489 SWALL:AAO77596 (EMBL:AE016936) (117 aa) fasta scores: E(): 2e-41, 99.13% id in 116 aa, and to Fusobacterium nucleatum 50S ribosomal protein L19 RplS or FN0430 SWALL:RL19_FUSNN (SWALL:Q8RG80) (116 aa) fasta scores: E(): 1.8e-21, 60% id in 110 aa; putative 50S ribosomal protein 594950 3285926 BF9343_0489 Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein YP_210226.1 594597 R 272559 CDS YP_210227.1 60680083 3285488 595107..595895 1 NC_003228.3 Similar to Enterobacter aerogenes UDP-sugar hydrolase UshA SWALL:Q9RQT7 (EMBL:AF068226) (550 aa) fasta scores: E(): 2e-07, 28% id in 175 aa, and to Bacteroides thetaiotaomicron putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase BT2441 SWALL:AAO77548 (EMBL:AE016936) (278 aa) fasta scores: E(): 1.7e-64, 68.19% id in 261 aa, and to Escherichia coli O6 hypothetical protein c4898 SWALL:Q8FBB1 (EMBL:AE016770) (519 aa) fasta scores: E(): 5e-13, 30.23% id in 258 aa; putative 5'nucleotidase/UDP-sugar hydrolase 595895 3285488 BF9343_0490 Bacteroides fragilis NCTC 9343 putative 5'nucleotidase/UDP-sugar hydrolase YP_210227.1 595107 D 272559 CDS YP_210228.1 60680084 3288760 595935..596807 1 NC_003228.3 N-terminus is similar to Trichinella spiralis secreted 5'-nucleotidase SWALL:Q8MQS9 (EMBL:AY127571) (550 aa) fasta scores: E(): 1e-24, 34.61% id in 286 aa, and to entire protein of Bacteroides thetaiotaomicron 5'-nucleotidase precursor BT2440 SWALL:AAO77547 (EMBL:AE016936) (295 aa) fasta scores: E(): 4.1e-78, 72.01% id in 268 aa; possible secreted 5'-nucleotidase 596807 3288760 BF9343_0491 Bacteroides fragilis NCTC 9343 possible secreted 5'-nucleotidase YP_210228.1 595935 D 272559 CDS YP_210229.1 60680085 3288773 596875..599865 1 NC_003228.3 N-terminus is similar to Streptomyces thermoviolaceus beta-N-acetylglucosaminidase precursor nagA SWALL:O82840 (EMBL:AB008771) (632 aa) fasta scores: E(): 7.6e-37, 35.02% id in 454 aa, and entire protein is similar to Bacteroides thetaiotaomicron beta-N-acetylglucosaminidase BT2439 SWALL:AAO77546 (EMBL:AE016936) (1001 aa) fasta scores: E(): 9.4e-201, 52.42% id in 971 aa, and C-terminus is similar to Chlorobium tepidum D-alanyl-d-alanine carboxypeptidease, putative CT0324 SWALL:Q8KFK2 (EMBL:AE012811) (380 aa) fasta scores: E(): 8.7e-20, 30.32% id in 432 aa. CDS specifies possible fusion protein; possible beta-N-acetylglucosaminidase/beta-lactamase fusion protein 599865 3288773 BF9343_0492 Bacteroides fragilis NCTC 9343 possible beta-N-acetylglucosaminidase/beta-lactamase fusion protein YP_210229.1 596875 D 272559 CDS YP_210230.1 60680086 3286017 599865..602948 1 NC_003228.3 Full length similar to Porphyromonas gingivalis W83 glycosyl hydrolase, family 3 PG0011 SWALL:AAQ65269 (EMBL:AE017172) (1003 aa) fasta scores: E(): 8.1e-120, 38.01% id in 1018 aa, N-terminal region to Alteromonas sp. beta-hexosaminidase A precursor CHT60 SWALL:HEXA_ALTSO (SWALL:P48823) (598 aa) fasta scores: E(): 1.1e-17, 31.28% id in 406 aa, and C-terminal region to Rhodopirellula baltica putative esterase RB1608 SWALL:Q7UX25 (EMBL:BX294135) (389 aa) fasta scores: E(): 1.9e-16, 30.07% id in 409 aa; putative hydrolase/beta lactamase fusion protein 602948 3286017 BF9343_0493 Bacteroides fragilis NCTC 9343 putative hydrolase/beta lactamase fusion protein YP_210230.1 599865 D 272559 CDS YP_210231.1 60680087 3288744 603565..606756 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4357 SWALL:AAO79462 (EMBL:AE016945) (1178 aa) fasta scores: E(): 8.1e-216, 53.22% id in 1071 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0754 SWALL:AAO75861 (EMBL:AE016929) (1138 aa) fasta scores: E(): 5.7e-130, 46.49% id in 1069 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1619 SWALL:AAO76726 (EMBL:AE016932) (1150 aa) fasta scores: E(): 4.7e-123, 43.62% id in 1075 aa. CDS truncated 110 amino acids at the N-terminus; putative outer membrane protein 606756 3288744 BF9343_0494 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210231.1 603565 D 272559 CDS YP_210232.1 60680088 3288770 606772..608742 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4358 SWALL:AAO79463 (EMBL:AE016945) (628 aa) fasta scores: E(): 1.4e-42, 49.09% id in 660 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0755 SWALL:AAO75862 (EMBL:AE016929) (601 aa) fasta scores: E(): 2.6e-33, 38.35% id in 657 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1620 SWALL:AAO76727 (EMBL:AE016932) (618 aa) fasta scores: E(): 3.3e-26, 38.13% id in 666 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0030 SWALL:AAO75137 (EMBL:AE016926) (609 aa) fasta scores: E(): 2.4e-07, 26.79% id in 698 aa; hypothetical protein 608742 3288770 BF9343_0495 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210232.1 606772 D 272559 CDS YP_210233.1 60680089 3288755 608937..610397 1 NC_003228.3 Similar to Strongylocentrotus purpuratus arylsulfatase precursor SWALL:ARS_STRPU (SWALL:P50473) (567 aa) fasta scores: E(): 1.2e-17, 30.76% id in 429 aa, and to Bacteroides thetaiotaomicron arylsulfatase precursor BT1636 SWALL:AAO76743 (EMBL:AE016932) (509 aa) fasta scores: E(): 7e-52, 43.13% id in 524 aa, and to Escherichia coli O6 hypothetical protein C0022 SWALL:Q8FLC3 (EMBL:AE016755) (509 aa) fasta scores: E(): 1.1e-38, 33.05% id in 481 aa; putative arylsulfatase 610397 3288755 BF9343_0496 Bacteroides fragilis NCTC 9343 putative arylsulfatase YP_210233.1 608937 D 272559 CDS YP_210234.1 60680090 3288694 complement(610521..611147) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2438 SWALL:AAO77545 (EMBL:AE016936) (208 aa) fasta scores: E(): 7e-69, 76.44% id in 208 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1074 SWALL:AAO76181 (EMBL:AE016930) (211 aa) fasta scores: E(): 1.6e-38, 49.52% id in 212 aa; hypothetical protein 611147 3288694 BF9343_0497 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210234.1 610521 R 272559 CDS YP_210235.1 60680091 3286009 complement(611165..611797) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2437 SWALL:AAO77544 (EMBL:AE016936) (210 aa) fasta scores: E(): 7.3e-60, 66.66% id in 210 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1073 SWALL:AAO76180 (EMBL:AE016930) (214 aa) fasta scores: E(): 9.3e-31, 42.32% id in 215 aa; hypothetical protein 611797 3286009 BF9343_0498 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210235.1 611165 R 272559 CDS YP_210236.1 60680092 3286093 611906..613273 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative secreted tripeptidyl aminopeptidase BT2436 SWALL:Q8A511 (EMBL:AE016936) (454 aa) fasta scores: E(): 1.9e-128, 70.65% id in 443 aa, and to Streptomyces coelicolor secreted tripeptidyl aminopeptidase sco2761 or SCC57A.32c SWALL:Q9RDG7 (EMBL:AL939113) (474 aa) fasta scores: E(): 1.1e-37, 34% id in 447 aa, and to Streptomyces avermitilis putative secreted tripeptidyl aminopeptidase sav5300 SWALL:Q82CP3 (EMBL:AP005042) (482 aa) fasta scores: E(): 1.5e-37, 32.77% id in 421 aa; hypothetical protein 613273 3286093 BF9343_0499 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210236.1 611906 D 272559 CDS YP_210237.1 60680093 3288768 complement(613432..613782) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron MarR family transcriptional regulator BT2435 SWALL:AAO77542 (EMBL:AE016936) (122 aa) fasta scores: E(): 6.1e-22, 57.75% id in 116 aa, and to Sulfolobus solfataricus transcriptional regulator, MarR family, putative SSO1082 SWALL:Q97Z53 (EMBL:AE006726) (154 aa) fasta scores: E(): 7e-05, 38.55% id in 83 aa; putative MarR family transcriptional regulator 613782 3288768 BF9343_0500 Bacteroides fragilis NCTC 9343 putative MarR family transcriptional regulator YP_210237.1 613432 R 272559 CDS YP_210238.1 60680094 3288751 complement(613792..616272) 1 NC_003228.3 Similar to Staphylococcus aureus coenzyme A disulfide reductase SWALL:O52582 (EMBL:AF041467) (438 aa) fasta scores: E(): 9.7e-47, 35.57% id in 447 aa, and to Listeria innocua hypothetical protein Pli0040 SWALL:Q926L9 (EMBL:AL592102) (557 aa) fasta scores: E(): 2.4e-67, 38.79% id in 549 aa, and to Archaeoglobus fulgidus NADH oxidase af0400 SWALL:O29847 (EMBL:AE001077) (551 aa) fasta scores: E(): 5.5e-67, 40.18% id in 550 aa; putative pyridine nucleotide oxidoreductase 616272 3288751 BF9343_0501 Bacteroides fragilis NCTC 9343 putative pyridine nucleotide oxidoreductase YP_210238.1 613792 R 272559 CDS YP_210239.1 60680095 3288739 complement(616591..618009) 1 NC_003228.3 Similar to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk or B4024 SWALL:AK3_ECOLI (SWALL:P08660) (449 aa) fasta scores: E(): 6.2e-19, 23.94% id in 451 aa, and to Chlorobium tepidum aspartokinase LysC or CT0095 SWALL:Q8KG73 (EMBL:AE012788) (470 aa) fasta scores: E(): 8.3e-23, 26.18% id in 466 aa, and to Arabidopsis thaliana putative aspartate kinase F1c9.20 or f28j7.35 SWALL:Q9S702 (EMBL:AC011664) (559 aa) fasta scores: E(): 4.4e-20, 27.06% id in 484 aa; putative aspartate kinase 618009 3288739 BF9343_0502 Bacteroides fragilis NCTC 9343 putative aspartate kinase YP_210239.1 616591 R 272559 CDS YP_210240.1 60680096 3288666 618260..619603 1 NC_003228.3 Similar to Escherichia coli acetoacetate metabolism regulatory protein AtoC or Az or B2220 SWALL:ATOC_ECOLI (SWALL:Q06065) (461 aa) fasta scores: E(): 1.9e-57, 39.91% id in 451 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT2433 SWALL:AAO77540 (EMBL:AE016936) (446 aa) fasta scores: E(): 1.9e-138, 86.57% id in 447 aa, and to Escherichia coli O6 acetoacetate metabolism regulatory protein AtoC or C2763 SWALL:Q8CXY6 (EMBL:AE016763) (461 aa) fasta scores: E(): 1.5e-57, 39.91% id in 451 aa; putative two-component response regulator-like protein 619603 3288666 BF9343_0503 Bacteroides fragilis NCTC 9343 putative two-component response regulator-like protein YP_210240.1 618260 D 272559 CDS YP_210241.1 60680097 3289184 620044..621750 1 NC_003228.3 Similar to Clostridium acetobutylicum potassium-transporting ATPase A chain KdpA or CAC3682 SWALL:ATKA_CLOAB (SWALL:O32327) (557 aa) fasta scores: E(): 8.7e-95, 43.56% id in 567 aa, and to Bacteroides thetaiotaomicron K+-transporting ATPase A chain BT2425 SWALL:AAO77532 (EMBL:AE016936) (568 aa) fasta scores: E(): 0, 92.07% id in 568 aa, and to Deinococcus radiodurans potassium-transporting ATPase A chain KdpA or drb0086 SWALL:ATKA_DEIRA (SWALL:Q9RZN7) (568 aa) fasta scores: E(): 1.7e-91, 42.16% id in 574 aa; putative potassium-transporting ATPase 621750 kdpA 3289184 kdpA Bacteroides fragilis NCTC 9343 putative potassium-transporting ATPase YP_210241.1 620044 D 272559 CDS YP_210242.1 60680098 3289151 621772..623820 1 NC_003228.3 Similar to Clostridium acetobutylicum potassium-transporting ATPase B chain KdpB or CAC3681 SWALL:ATKB_CLOAB (SWALL:O32328) (685 aa) fasta scores: E(): 8.4e-145, 60.29% id in 685 aa, and to Bacteroides thetaiotaomicron K+-transporting ATPase B chain BT2424 SWALL:AAO77531 (EMBL:AE016936) (677 aa) fasta scores: E(): 1.7e-209, 88.27% id in 682 aa, and to Thermoanaerobacter tengcongensis potassium-transporting ATPase B chain KdpB or TTE2011 SWALL:ATKB_THETN (SWALL:Q8R8I6) (681 aa) fasta scores: E(): 6.9e-146, 61.98% id in 684 aa; putative potassium-transporting ATPase B chain 623820 kdpB 3289151 kdpB Bacteroides fragilis NCTC 9343 putative potassium-transporting ATPase B chain YP_210242.1 621772 D 272559 CDS YP_210243.1 60680099 3287882 623832..624407 1 NC_003228.3 Similar to Clostridium acetobutylicum potassium-transporting ATPase C chain KdpC or CAC3680 SWALL:ATKC_CLOAB (SWALL:P94606) (204 aa) fasta scores: E(): 2e-19, 34.17% id in 199 aa, and to Bacteroides thetaiotaomicron potassium-transporting ATPase C chain KdpC or BT2423 SWALL:AAO77530 (EMBL:AE016936) (189 aa) fasta scores: E(): 6.9e-62, 85.18% id in 189 aa, and to Thermoanaerobacter tengcongensis potassium-transporting ATPase C chain KdpC or TTE2010 SWALL:Q8R8I7 (EMBL:AE013152) (193 aa) fasta scores: E(): 8.9e-27, 45.94% id in 185 aa, and from residue 130 is identical to previously sequenced Bacteroides fragilis FrrA (fragment) SWALL:Q8VTB5 (EMBL:AF329100) (63 aa) fasta scores: E(): 4.5e-18, 100% id in 63 aa; potassium-transporting ATPase c chain 624407 kdpC 3287882 kdpC Bacteroides fragilis NCTC 9343 potassium-transporting ATPase c chain YP_210243.1 623832 D 272559 CDS YP_210244.1 60680100 3285330 624417..625166 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis fragilis regulatory region FrrB SWALL:Q8VTB4 (EMBL:AF329100) (249 aa) fasta scores: E(): 2.6e-103, 100% id in 249 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2422 SWALL:AAO77529 (EMBL:AE016936) (248 aa) fasta scores: E(): 4.9e-62, 61.96% id in 255 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0546 SWALL:AAO75653 (EMBL:AE016928) (241 aa) fasta scores: E(): 2.2e-19, 40.55% id in 254 aa; hypothetical protein 625166 frrB 3285330 frrB Bacteroides fragilis NCTC 9343 hypothetical protein YP_210244.1 624417 D 272559 CDS YP_210245.1 60680101 3289210 625262..626389 1 NC_003228.3 Similar to Clostridium acetobutylicum sensor protein KdpD or CAC3678 SWALL:KDPD_CLOAB (SWALL:P94608) (900 aa) fasta scores: E(): 2.4e-41, 40.72% id in 329 aa, and identical to previously sequenced Bacteroides fragilis fragilis regulatory region FrrC SWALL:Q8VTB3 (EMBL:AF329100) (375 aa) fasta scores: E(): 4.6e-133, 100% id in 375 aa, and similar to Bacteroides thetaiotaomicron FrrC, osmosensitive K+ channel histidine kinase BT2421 SWALL:AAO77528 (EMBL:AE016936) (377 aa) fasta scores: E(): 6.5e-121, 86.93% id in 375 aa; putative osmosensitive potassium transport sensor protein 626389 kdpD 3289210 kdpD Bacteroides fragilis NCTC 9343 putative osmosensitive potassium transport sensor protein YP_210245.1 625262 D 272559 CDS YP_210246.1 60680102 3285680 626418..627857 1 NC_003228.3 Similar to Pseudomonas aeruginosa alginate biosynthesis sensor protein KinB SWALL:O34206 (EMBL:U97063) (595 aa) fasta scores: E(): 1.1e-24, 26.35% id in 463 aa, and identical to previously sequenced Bacteroides fragilis fragilis regulatory region FrrD SWALL:Q8VTB2 (EMBL:AF329100) (479 aa) fasta scores: E(): 3.1e-170, 100% id in 479 aa, and similar to Bacteroides thetaiotaomicron two-component system histidine kinase, FrrD BT2420 SWALL:AAO77527 (EMBL:AE016936) (482 aa) fasta scores: E(): 4.1e-145, 85.38% id in 479 aa; putative two-component sensor histidine kinase 627857 frrD 3285680 frrD Bacteroides fragilis NCTC 9343 putative two-component sensor histidine kinase YP_210246.1 626418 D 272559 CDS YP_210247.1 60680103 3288455 628014..628577 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 8.3e-71, 100% id in 187 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1617 SWALL:AAO76724 (EMBL:AE016932) (187 aa) fasta scores: E(): 6.4e-24, 39.36% id in 188 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT0966 SWALL:AAO76073 (EMBL:AE016929) (183 aa) fasta scores: E(): 7.4e-22, 40.22% id in 174 aa; putative RNA polymerase ECF sigma factor 628577 rpoE 3288455 rpoE Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF sigma factor YP_210247.1 628014 D 272559 CDS YP_210248.1 60680104 3285681 628631..629641 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 2e-133, 100% id in 336 aa, and Similar to Bacteroides thetaiotaomicron putative anti-sigma factor BT1618 SWALL:AAO76725 (EMBL:AE016932) (335 aa) fasta scores: E(): 1.6e-31, 34.92% id in 335 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT0753 SWALL:AAO75860 (EMBL:AE016929) (341 aa) fasta scores: E(): 4.9e-25, 30% id in 330 aa; putative anti-sigma factor 629641 frrF 3285681 frrF Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210248.1 628631 D 272559 CDS YP_210249.1 60680105 3285142 629760..633173 1 NC_003228.3 Identical to Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 0, 100% id in 1137 aa, and similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1875 SWALL:AAO76982 (EMBL:AE016933) (1119 aa) fasta scores: E(): 5.7e-131, 41.34% id in 1144 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3103 SWALL:AAO78209 (EMBL:AE016939) (1061 aa) fasta scores: E(): 1.6e-70, 32.27% id in 1075 aa; putative outer membrane protein 633173 frrG 3285142 frrG Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210249.1 629760 D 272559 CDS YP_210250.1 60680106 3285846 633197..634684 1 NC_003228.3 Identical to Bacteroides fragilis fragilis regulatory region FrrH SWALL:Q8VTA8 (EMBL:AF329100) (495 aa) fasta scores: E(): 4.5e-205, 100% id in 495 aa, and similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1874 SWALL:AAO76981 (EMBL:AE016933) (652 aa) fasta scores: E(): 2.2e-35, 31.18% id in 497 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3311 SWALL:AAO78417 (EMBL:AE016940) (506 aa) fasta scores: E(): 4.6e-12, 25.25% id in 400 aa; putative outer membrane protein 634684 frrH 3285846 frrH Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210250.1 633197 D 272559 CDS YP_210251.1 60680107 3285847 634808..637201 1 NC_003228.3 Identical to Bacteroides fragilis fragilis regulatory region FrrI (fragment) to amino acid residue 196 SWALL:Q8VTA7 (EMBL:AF329100) (196 aa) fasta scores: E(): 1.5e-79, 100% id in 196 aa; hypothetical protein 637201 frrI 3285847 frrI Bacteroides fragilis NCTC 9343 hypothetical protein YP_210251.1 634808 D 272559 CDS YP_210252.1 60680108 3285916 637374..640322 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3514 SWALL:AAO78620 (EMBL:AE016941) (982 aa) fasta scores: E(): 0, 78.38% id in 981 aa, and to Caulobacter crescentus hypothetical protein Cc0543 CC0543 SWALL:Q9AAQ3 (EMBL:AE005727) (856 aa) fasta scores: E(): 3.4e-89, 37.03% id in 702 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2958 SWALL:AAO78064 (EMBL:AE016938) (789 aa) fasta scores: E(): 4.2e-78, 36.97% id in 641 aa; hypothetical protein 640322 3285916 BF9343_0515 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210252.1 637374 D 272559 CDS YP_210253.1 60680109 3285391 640428..641183 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4719 SWALL:AAO79824 (EMBL:AE016946) (240 aa) fasta scores: E(): 5.3e-07, 29.43% id in 231 aa; hypothetical protein 641183 3285391 BF9343_0516 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210253.1 640428 D 272559 CDS YP_210254.1 60680110 3288791 complement(642139..642795) 1 NC_003228.3 N-terminus is similar to Bacteroides thetaiotaomicron hypothetical protein BT0869 SWALL:Q8A9E6 (EMBL:AE016929) (115 aa) fasta scores: E(): 1.6e-15, 50% id in 110 aa; hypothetical protein 642795 3288791 BF9343_0517 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210254.1 642139 R 272559 CDS YP_210255.1 60680111 3288794 643671..644057 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2418 SWALL:Q8A526 (EMBL:AE016936) (128 aa) fasta scores: E(): 1.7e-44, 85.15% id in 128 aa; hypothetical protein 644057 3288794 BF9343_0518 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210255.1 643671 D 272559 CDS YP_210256.1 60680112 3287357 644134..646044 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2417 SWALL:Q8A527 (EMBL:AE016936) (616 aa) fasta scores: E(): 7.8e-187, 72.84% id in 615 aa, and to Chlorobium tepidum hypothetical protein CT0740 SWALL:Q8KEE9 (EMBL:AE012844) (452 aa) fasta scores: E(): 8.5e-19, 25.66% id in 452 aa, and to Leptospira interrogans hypothetical protein la1106 SWALL:Q8F742 (EMBL:AE011293) (631 aa) fasta scores: E(): 1.8e-14, 21.7% id in 470 aa; putative permease 646044 3287357 BF9343_0519 Bacteroides fragilis NCTC 9343 putative permease YP_210256.1 644134 D 272559 CDS YP_210257.1 60680113 3289297 646049..647263 1 NC_003228.3 Similar to Bacillus amyloliquefaciens riboflavin biosynthesis protein RibA [includes: GTP cyclohydrolase II 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase)] SWALL:GCH2_BACAM (SWALL:P51695) (398 aa) fasta scores: E(): 2e-80, 52.76% id in 398 aa, and to Bacteroides thetaiotaomicron GTP cyclohydrolase II BT2416 SWALL:AAO77523 (EMBL:AE016936) (404 aa) fasta scores: E(): 3.3e-121, 76.48% id in 404 aa, and to Aquifex aeolicus riboflavin biosynthesis protein RibA [includes: GTP cyclohydrolase II 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase)] or AQ_350 SWALL:GCH2_AQUAE (SWALL:O66679) (406 aa) fasta scores: E(): 5.8e-88, 56.75% id in 400 aa; putative riboflavin biosynthesis protein [includes: GTP cyclohydrolase ii; 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase)] 647263 ribA 3289297 ribA Bacteroides fragilis NCTC 9343 putative riboflavin biosynthesis protein [includes: GTP cyclohydrolase ii; 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase)] YP_210257.1 646049 D 272559 CDS YP_210258.1 60680114 3289081 647346..648539 1 NC_003228.3 Similar to Rhizobium leguminosarum aspartate aminotransferase AspC or AatA SWALL:AAT_RHILP (SWALL:O86459) (400 aa) fasta scores: E(): 3.4e-69, 50.76% id in 394 aa, and to Bacteroides thetaiotaomicron aspartate aminotransferase BT2415 SWALL:AAO77522 (EMBL:AE016936) (397 aa) fasta scores: E(): 9.3e-143, 94.45% id in 397 aa, and to Chlorobium tepidum aspartate aminotransferase, putative CT0966 SWALL:Q8KDS8 (EMBL:AE012861) (400 aa) fasta scores: E(): 1.1e-69, 47.95% id in 392 aa; putative aspartate aminotransferase 648539 aspC1 3289081 aspC1 Bacteroides fragilis NCTC 9343 putative aspartate aminotransferase YP_210258.1 647346 D 272559 CDS YP_210259.1 60680115 3288769 648669..651404 1 NC_003228.3 Similar to Bacillus sp. GL1 rhamnosidase A RhaA SWALL:Q93RE8 (EMBL:AB046705) (886 aa) fasta scores: E(): 2.2e-106, 33.99% id in 906 aa, and to Bacteroides thetaiotaomicron putative alpha-rhamnosidase BT1013 SWALL:AAO76120 (EMBL:AE016930) (1290 aa) fasta scores: E(): 2.3e-142, 48.87% id in 892 aa, and to Streptomyces coelicolor hypothetical protein SCO0488 or SCF34.07 SWALL:Q9RK18 (EMBL:AL939105) (1138 aa) fasta scores: E(): 7.2e-84, 31.46% id in 804 aa; putative exported rhamnosidase A 651404 3288769 BF9343_0522 Bacteroides fragilis NCTC 9343 putative exported rhamnosidase A YP_210259.1 648669 D 272559 CDS YP_210260.1 60680116 3288804 complement(651399..651641) 1 NC_003228.3 no significant database matches; hypothetical protein 651641 3288804 BF9343_0523 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210260.1 651399 R 272559 CDS YP_210261.1 60680117 3289237 651817..652734 1 NC_003228.3 Similar to Escherichia coli homoserine O-succinyltransferase MetA or B4013 SWALL:META_ECOLI (SWALL:P07623) (308 aa) fasta scores: E(): 2.8e-62, 46.86% id in 303 aa, and to Bacteroides thetaiotaomicron homoserine O-succinyltransferase BT2413 SWALL:AAO77520 (EMBL:AE016935) (305 aa) fasta scores: E(): 7.1e-117, 90.13% id in 304 aa, and to Clostridium acetobutylicum homoserine O-succinyltransferase MetA or CAC1825 SWALL:META_CLOAB (SWALL:Q97I29) (301 aa) fasta scores: E(): 1.2e-77, 57.8% id in 301 aa; putative homoserine O-succinyltransferase 652734 metA 3289237 metA Bacteroides fragilis NCTC 9343 putative homoserine O-succinyltransferase YP_210261.1 651817 D 272559 CDS YP_210262.1 60680118 3288795 652731..654557 1 NC_003228.3 Similar to Porphyromonas gingivalis peptidase PrtQ protein SWALL:Q9ZNF7 (EMBL:AB016085) (635 aa) fasta scores: E(): 2.4e-72, 50.4% id in 621 aa, and to Bacteroides thetaiotaomicron putative collagenase BT2412 SWALL:AAO77519 (EMBL:AE016935) (609 aa) fasta scores: E(): 8.8e-213, 84.84% id in 607 aa, and to Escherichia coli putative protease YdcP precursor or B1435 SWALL:YDCP_ECOLI (SWALL:P76104) (653 aa) fasta scores: E(): 3.5e-82, 46.69% id in 621 aa; putative protease 654557 3288795 BF9343_0525 Bacteroides fragilis NCTC 9343 putative protease YP_210262.1 652731 D 272559 CDS YP_210263.1 60680119 3288789 654554..655528 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2411 SWALL:AAO77518 (EMBL:AE016935) (344 aa) fasta scores: E(): 2e-101, 77.16% id in 324 aa; putative transmembrane protein 655528 3288789 BF9343_0526 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210263.1 654554 D 272559 CDS YP_210264.1 60680120 3287986 complement(655682..658069) 1 NC_003228.3 Similar to Pseudomonas fluorescens quinolobactin receptor QbsI SWALL:AAL65282 (EMBL:AY072690) (669 aa) fasta scores: E(): 3.5e-15, 23.44% id in 789 aa, and to Bacteroides thetaiotaomicron putative TonB-dependent outer membrane protein BT2409 SWALL:AAO77516 (EMBL:AE016935) (799 aa) fasta scores: E(): 7.3e-101, 64.93% id in 810 aa, and to Anabaena sp. hypothetical protein ALL4026 SWALL:Q8YQ14 (EMBL:AP003595) (854 aa) fasta scores: E(): 5.2e-19, 24.55% id in 782 aa; putative TonB dependent receptor 658069 3287986 BF9343_0527 Bacteroides fragilis NCTC 9343 putative TonB dependent receptor YP_210264.1 655682 R 272559 CDS YP_210265.1 60680121 3287243 complement(658180..658779) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron LuxR family transcriptional regulator BT2408 SWALL:AAO77515 (EMBL:AE016935) (200 aa) fasta scores: E(): 2.6e-62, 85% id in 200 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT0520 SWALL:AAO75627 (EMBL:AE016928) (203 aa) fasta scores: E(): 7.8e-08, 30.69% id in 202 aa, and to Brucella melitensis transcriptional regulatory protein DegU Bmei1582 SWALL:Q8YFE0 (EMBL:AE009594) (213 aa) fasta scores: E(): 1.4e-05, 60.34% id in 58 aa; putative LuxR family transcriptional regulator 658779 3287243 BF9343_0528 Bacteroides fragilis NCTC 9343 putative LuxR family transcriptional regulator YP_210265.1 658180 R 272559 CDS YP_210266.1 60680122 3288741 complement(658784..660373) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron NAD-utilizing dehydrogenases BT2407 SWALL:AAO77514 (EMBL:AE016935) (549 aa) fasta scores: E(): 5e-125, 84.85% id in 548 aa, and to Leptospira interrogans uncharacterized FAD-dependent dehydrogenase LB089 SWALL:Q8EXW8 (EMBL:AE011597) (518 aa) fasta scores: E(): 4.8e-65, 50.75% id in 528 aa, and to Clostridium acetobutylicum uncharacterized FAD-dependent dehydrogenase CAC3077 SWALL:Q97EN3 (EMBL:AE007804) (540 aa) fasta scores: E(): 9.8e-59, 37.14% id in 533 aa; hypothetical protein 660373 3288741 BF9343_0529 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210266.1 658784 R 272559 CDS YP_210267.1 60680123 3288771 complement(660418..660789) 1 NC_003228.3 Similar to Anabaena sp. hypothetical protein ALL3669 SWALL:Q8YQZ1 (EMBL:AP003593) (130 aa) fasta scores: E(): 4.1e-24, 56.8% id in 125 aa; hypothetical protein 660789 3288771 BF9343_0530 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210267.1 660418 R 272559 CDS YP_210268.1 60680124 3289307 complement(660845..662212) 1 NC_003228.3 Similar to Staphylococcus epidermidis RadA protein se0288 SWALL:Q8CQ87 (EMBL:AE016744) (457 aa) fasta scores: E(): 3.4e-80, 50.22% id in 452 aa, and to Bacteroides thetaiotaomicron putative DNA repair protein BT2406 SWALL:AAO77513 (EMBL:AE016935) (455 aa) fasta scores: E(): 6e-156, 94.28% id in 455 aa, and to Bacillus subtilis DNA repair protein RadA homolog or Sms SWALL:RADA_BACSU (SWALL:P37572) (458 aa) fasta scores: E(): 1.8e-86, 51.63% id in 459 aa; putative DNA repair protein 662212 radA 3289307 radA Bacteroides fragilis NCTC 9343 putative DNA repair protein YP_210268.1 660845 R 272559 CDS YP_210269.1 60680125 3287005 complement(662870..663895) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 L-asparaginase I AnsA or B1767 or Z2801 or ECS2474 SWALL:ASG1_ECOLI (SWALL:P18840) (338 aa) fasta scores: E(): 7.8e-52, 45.58% id in 340 aa, and to Bacteroides thetaiotaomicron L-asparaginase I BT2404 SWALL:Q8A540 (EMBL:AE016935) (327 aa) fasta scores: E(): 1.7e-108, 81.65% id in 327 aa. Possible alternative start site at codon 11. Note: Also similar to BF2680 (349 aa) fasta scores: E(): 6.2e-97, 68.605% identity in 344 aa overlap; putative L-asparaginase I 663895 3287005 BF9343_0532 Bacteroides fragilis NCTC 9343 putative L-asparaginase I YP_210269.1 662870 R 272559 CDS YP_210270.1 60680126 3287269 664413..666848 1 NC_003228.3 Similar to Escherichia coli aspartokinase I-homoserine dehydrogenase I ThrA SWALL:Q8RMX0 (EMBL:AF487900) (820 aa) fasta scores: E(): 3.6e-92, 36.79% id in 818 aa, and to Bacteroides thetaiotaomicron aspartokinase/homoserine dehydrogenase BT2403 SWALL:AAO77510 (EMBL:AE016935) (811 aa) fasta scores: E(): 0, 90.25% id in 811 aa, and to Chlorobium tepidum aspartokinase/homoserine dehydrogenase CT2030 SWALL:Q8KAX1 (EMBL:AE012953) (818 aa) fasta scores: E(): 7.8e-115, 42.77% id in 823 aa; putative aspartokinase I-homoserine dehydrogenase 666848 thrA 3287269 thrA Bacteroides fragilis NCTC 9343 putative aspartokinase I-homoserine dehydrogenase YP_210270.1 664413 D 272559 CDS YP_210271.1 60680127 3288807 666860..668071 1 NC_003228.3 Similar to Methanococcus jannaschii 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 ApgM2 or Mj0010 SWALL:APG2_METJA (SWALL:Q60326) (428 aa) fasta scores: E(): 1.9e-13, 26.31% id in 418 aa, and to Bacteroides thetaiotaomicron phosphoglycerate mutase BT2402 SWALL:AAO77509 (EMBL:AE016935) (407 aa) fasta scores: E(): 1e-147, 90.07% id in 403 aa, and to Methanosarcina mazei 2,3-bisphosphoglycerate-independent phosphoglycerate mutase ApgM or Mm1418 SWALL:APGM_METMA (SWALL:Q8PX04) (397 aa) fasta scores: E(): 6.2e-73, 50.25% id in 400 aa; putative phosphoglycerate mutase 668071 3288807 BF9343_0534 Bacteroides fragilis NCTC 9343 putative phosphoglycerate mutase YP_210271.1 666860 D 272559 CDS YP_210272.1 60680128 3287627 668218..669519 1 NC_003228.3 Similar to Escherichia coli threonine synthase ThrC or B0004 SWALL:THRC_ECOLI (SWALL:P00934) (428 aa) fasta scores: E(): 3.5e-67, 44.34% id in 433 aa, and to Bacteroides thetaiotaomicron threonine synthase BT2401 SWALL:AAO77508 (EMBL:AE016935) (433 aa) fasta scores: E(): 3.3e-150, 88.63% id in 431 aa, and to Chlorobium tepidum threonine synthase ThrC or CT2035 SWALL:Q8KAW6 (EMBL:AE012953) (441 aa) fasta scores: E(): 6.6e-73, 45.39% id in 434 aa; putative threonine synthase 669519 thrC 3287627 thrC Bacteroides fragilis NCTC 9343 putative threonine synthase YP_210272.1 668218 D 272559 CDS YP_210273.1 60680129 3288811 669607..669819 1 NC_003228.3 no significant database matches; hypothetical protein 669819 3288811 BF9343_0536 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210273.1 669607 D 272559 CDS YP_210274.1 60680130 3288819 669932..670882 1 NC_003228.3 Similar to Proteus vulgaris Orf84 protein SWALL:Q8L2B6 (EMBL:AP004237) (267 aa) fasta scores: E(): 6e-06, 23.45% id in 243 aa, and to Bacteroides thetaiotaomicron putative permease BT2567 SWALL:AAO77674 (EMBL:AE016936) (306 aa) fasta scores: E(): 3.9e-84, 72.57% id in 299 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4051 SWALL:AAO79156 (EMBL:AE016943) (305 aa) fasta scores: E(): 9.2e-22, 31% id in 300 aa; putative transmembrane protein 670882 3288819 BF9343_0537 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210274.1 669932 D 272559 CDS YP_210275.1 60680131 3288788 complement(670836..671459) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2397 SWALL:AAO77504 (EMBL:AE016935) (207 aa) fasta scores: E(): 1.3e-50, 65.65% id in 198 aa, and to Helicobacter pylori J99 putative Jhp1211 SWALL:Q9ZJT7 (EMBL:AE001547) (204 aa) fasta scores: E(): 1.5e-17, 34.14% id in 205 aa, and to Helicobacter pylori hypothetical protein Hp1291 SWALL:O25878 (EMBL:AE000633) (204 aa) fasta scores: E(): 3e-17, 33.17% id in 205 aa; hypothetical protein 671459 3288788 BF9343_0538 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210275.1 670836 R 272559 CDS YP_210276.1 60680132 3286875 complement(671446..672018) 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri protein PnuC or B0751 or SF0553 or S0561 SWALL:PNUC_ECOLI (SWALL:P31215) (239 aa) fasta scores: E(): 1.1e-05, 25.36% id in 205 aa, and to Bacteroides thetaiotaomicron putative membrane transporter involved in nicotinamide mononucleotide transport BT2396 SWALL:AAO77503 (EMBL:AE016935) (188 aa) fasta scores: E(): 5.7e-62, 78.3% id in 189 aa, and to Pseudomonas syringae nicotinamide mononucleotide transporter PnuC, putative PSPTO3142 SWALL:AAO56629 (EMBL:AE016867) (187 aa) fasta scores: E(): 1.8e-20, 34.4% id in 186 aa; putative nicotinamide mononucleotide transporter 672018 3286875 BF9343_0539 Bacteroides fragilis NCTC 9343 putative nicotinamide mononucleotide transporter YP_210276.1 671446 R 272559 CDS YP_210277.1 60680133 3288780 complement(672022..674241) 1 NC_003228.3 Similar to Vibrio anguillarum HupA protein SWALL:Q9AJS1 (EMBL:AJ306289) (716 aa) fasta scores: E(): 2.1e-09, 21.49% id in 749 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2390 SWALL:AAO77497 (EMBL:AE016935) (743 aa) fasta scores: E(): 0, 73.42% id in 745 aa, and to Porphyromonas gingivalis hypothetical TonB-linked outer membrane receptor PG47 SWALL:Q9KIB1 (EMBL:AF237557) (867 aa) fasta scores: E(): 5.4e-13, 22.05% id in 739 aa; putative TonB-dependent transmembrane receptor protein 674241 3288780 BF9343_0540 Bacteroides fragilis NCTC 9343 putative TonB-dependent transmembrane receptor protein YP_210277.1 672022 R 272559 CDS YP_210278.1 60680134 3287114 674454..675359 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transport protein BT2389 SWALL:AAO77496 (EMBL:AE016935) (303 aa) fasta scores: E(): 3.5e-91, 81.66% id in 300 aa, and to Vibrio parahaemolyticus conserved hypothetical protein vp2598 SWALL:BAC60861 (EMBL:AP005082) (288 aa) fasta scores: E(): 1.1e-42, 42.9% id in 282 aa, and to Pseudomonas putida conserved hypothetical protein PP1353 SWALL:AAN66976 (EMBL:AE016779) (282 aa) fasta scores: E(): 1.6e-42, 44.36% id in 266 aa; putative transmembrane protein 675359 3287114 BF9343_0541 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210278.1 674454 D 272559 CDS YP_210279.1 60680135 3288803 complement(675429..675668) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2388 SWALL:AAO77495 (EMBL:AE016935) (79 aa) fasta scores: E(): 6.9e-20, 73.07% id in 78 aa; hypothetical protein 675668 3288803 BF9343_0542 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210279.1 675429 R 272559 CDS YP_210280.1 60680136 3288793 675796..676383 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 1.5e-11, 31.18% id in 186 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1053 SWALL:AAO76160 (EMBL:AE016930) (202 aa) fasta scores: E(): 6.8e-12, 29.73% id in 185 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1617 SWALL:AAO76724 (EMBL:AE016932) (187 aa) fasta scores: E(): 7.4e-12, 32.58% id in 178 aa; putative RNA polymerase ECF-type sigma factor 676383 3288793 BF9343_0543 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210280.1 675796 D 272559 CDS YP_210281.1 60680137 3288820 676445..677443 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 1.6e-17, 31.95% id in 241 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT1618 SWALL:AAO76725 (EMBL:AE016932) (335 aa) fasta scores: E(): 8.2e-23, 35.74% id in 277 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT0753 SWALL:AAO75860 (EMBL:AE016929) (341 aa) fasta scores: E(): 2.9e-21, 31.15% id in 321 aa; putative anti-sigma factor 677443 3288820 BF9343_0544 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210281.1 676445 D 272559 CDS YP_210282.1 60680138 3286789 677449..680052 1 NC_003228.3 Similar to Xanthomonas axonopodis hypothetical protein XAC1774 SWALL:Q8PLM1 (EMBL:AE011809) (790 aa) fasta scores: E(): 2.3e-40, 28.57% id in 777 aa, and to Xanthomonas campestris hypothetical protein XCC1756 SWALL:Q8P9U1 (EMBL:AE012277) (790 aa) fasta scores: E(): 3.6e-38, 29.04% id in 778 aa; hypothetical protein 680052 3286789 BF9343_0545 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210282.1 677449 D 272559 CDS YP_210283.1 60680139 3286735 680148..683429 1 NC_003228.3 Similar to Bacteroides CACcae TonB-linked outer membrane protein OmpW SWALL:Q93FV1 (EMBL:AF305878) (947 aa) fasta scores: E(): 2.3e-60, 28.54% id in 995 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2461 SWALL:AAO77568 (EMBL:AE016936) (1134 aa) fasta scores: E(): 6.6e-81, 35.39% id in 1130 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4724 SWALL:AAO79829 (EMBL:AE016946) (1139 aa) fasta scores: E(): 2.4e-78, 30.19% id in 1156 aa; putative TonB-linked outer membrane receptor protein 683429 3286735 BF9343_0546 Bacteroides fragilis NCTC 9343 putative TonB-linked outer membrane receptor protein YP_210283.1 680148 D 272559 CDS YP_210284.1 60680140 3288833 683442..685010 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrH SWALL:Q8VTA8 (EMBL:AF329100) (495 aa) fasta scores: E(): 1.1e-11, 26.63% id in 552 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0361 SWALL:AAO75468 (EMBL:AE016927) (601 aa) fasta scores: E(): 3.3e-17, 29.41% id in 612 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4089 SWALL:AAO79194 (EMBL:AE016943) (598 aa) fasta scores: E(): 1.2e-16, 28.14% id in 597 aa; putative outer membrane protein 685010 3288833 BF9343_0547 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210284.1 683442 D 272559 CDS YP_210285.1 60680141 3288834 685029..687956 1 NC_003228.3 Similar to Thermoanaerobacter thermosulfurogenes beta-galactosidase LacZ SWALL:BGAL_THETU (SWALL:P26257) (716 aa) fasta scores: E(): 4.8e-27, 28.11% id in 754 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT4684 SWALL:Q89YP7 (EMBL:AE016946) (895 aa) fasta scores: E(): 9.8e-91, 34.72% id in 792 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT0983 SWALL:Q8A934 (EMBL:AE016930) (882 aa) fasta scores: E(): 6.4e-72, 33.29% id in 835 aa; putative beta-galactosidase 687956 3288834 BF9343_0548 Bacteroides fragilis NCTC 9343 putative beta-galactosidase YP_210285.1 685029 D 272559 CDS YP_210286.1 60680142 3288830 687957..690752 1 NC_003228.3 Similar to Aspergillus candidus beta-galactosidase precursor LacB SWALL:Q8TFE6 (EMBL:AJ431643) (1005 aa) fasta scores: E(): 3e-18, 23.5% id in 1004 aa, and to Aspergillus niger beta-galactosidase precursor LacA SWALL:BGAL_ASPNG (SWALL:P29853) (1006 aa) fasta scores: E(): 7e-18, 28.5% id in 421 aa, and to Pyrococcus horikoshii 778aa long hypothetical beta-galactosidase precursor PH0511 SWALL:O58247 (EMBL:AP000002) (778 aa) fasta scores: E(): 7e-14, 32.07% id in 212 aa; putative glycosyl hydrolase 690752 3288830 BF9343_0549 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase YP_210286.1 687957 D 272559 CDS YP_210287.1 60680143 3288826 690764..692344 1 NC_003228.3 Similar to Caldocellum saccharolyticum xylanase XynF SWALL:O30426 (EMBL:AF005383) (1347 aa) fasta scores: E(): 4.2e-41, 31.79% id in 695 aa, and to Bacteroides thetaiotaomicron putative beta-xylosidase BT2852 SWALL:AAO77958 (EMBL:AE016937) (514 aa) fasta scores: E(): 4.9e-57, 36.89% id in 534 aa, and to Clostridium acetobutylicum possible beta-xylosidase, family 43 of glycosyl hydrolases CAP0114 SWALL:Q97TI7 (EMBL:AE001438) (531 aa) fasta scores: E(): 4.5e-55, 37.91% id in 546 aa; putative glycosyl hydrolase/xylanase 692344 3288826 BF9343_0550 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase/xylanase YP_210287.1 690764 D 272559 CDS YP_210288.1 60680144 3287534 complement(692540..692716) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4646 SWALL:AAO79751 (EMBL:AE016946) (58 aa) fasta scores: E(): 1.9e-17, 70.69% id in 58 aa, and to Clostridium perfringens hypothetical protein CPE1483 SWALL:Q8XKB7 (EMBL:AP003190) (64 aa) fasta scores: E(): 2.6e-09, 51.92% id in 52 aa; hypothetical protein 692716 3287534 BF9343_0551 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210288.1 692540 R 272559 CDS YP_210289.1 60680145 3288309 complement(692812..694035) 1 NC_003228.3 Similar to Leptospira interrogans hypothetical protein LA1357 SWALL:Q8F6F0 (EMBL:AE011315) blast scores: E(): 3e-04, score: 48 31% id; conserved hypothetical lipoprotein 694035 3288309 BF9343_0552 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_210289.1 692812 R 272559 CDS YP_210290.1 60680146 3288781 complement(694069..696408) 1 NC_003228.3 Similar to Stigmatella aurantiaca putative iron transport TonB-dependent membrane receptor MxcH SWALL:Q9F634 (EMBL:AF299336) (869 aa) fasta scores: E(): 2e-15, 24.57% id in 700 aa, and to Bacteroides thetaiotaomicron putative TonB-linked outer membrane receptor BT2065 SWALL:AAO77172 (EMBL:AE016934) (796 aa) fasta scores: E(): 5.1e-29, 29.07% id in 798 aa, and to Leptospira interrogans probable TonB-dependent receptor CirA or La1356 SWALL:Q8F6F1 (EMBL:AE011315) (684 aa) fasta scores: E(): 1.9e-16, 21.71% id in 723 aa; putative TonB-dependent outer membrane receptor protein 696408 3288781 BF9343_0553 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_210290.1 694069 R 272559 CDS YP_210291.1 60680147 3288836 696742..697746 1 NC_003228.3 Similar to Pseudomonas aeruginosa regulatory protein PchR or PA4227 SWALL:PCHR_PSEAE (SWALL:P40883) (296 aa) fasta scores: E(): 7.9e-13, 37.03% id in 162 aa, and to Anabaena sp. transcriptional regulator ALR2575 SWALL:Q8YTY8 (EMBL:AP003589) (339 aa) fasta scores: E(): 1.6e-18, 26.71% id in 307 aa, and to Anabaena sp. transcriptional regulator ALR2587 SWALL:Q8YTX6 (EMBL:AP003590) (327 aa) fasta scores: E(): 1.5e-17, 35.64% id in 202 aa; putative AraC family transcriptional regulatory protein 697746 3288836 BF9343_0554 Bacteroides fragilis NCTC 9343 putative AraC family transcriptional regulatory protein YP_210291.1 696742 D 272559 CDS YP_210292.1 60680148 3288805 complement(698344..699483) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative permease BT2276 SWALL:AAO77383 (EMBL:AE016935) (377 aa) fasta scores: E(): 5.7e-119, 82.58% id in 379 aa, and to Ralstonia solanacearum probable permease transmembrane transport protein RSC2624 or RS00928 SWALL:Q8XW51 (EMBL:AL646071) (356 aa) fasta scores: E(): 1.5e-20, 27.38% id in 336 aa, and to Deinococcus radiodurans hypothetical protein Dr0252 SWALL:Q9RXQ6 (EMBL:AE001886) (373 aa) fasta scores: E(): 5.7e-18, 28.45% id in 362 aa; putative transmembrane protein 699483 3288805 BF9343_0555 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210292.1 698344 R 272559 CDS YP_210293.1 60680149 3287448 complement(699546..700145) 1 NC_003228.3 Similar to Rhodothermus sp. thymidine kinase tdk SWALL:KITH_RHOSI (SWALL:Q9ZIG2) (213 aa) fasta scores: E(): 5e-40, 61.49% id in 174 aa, and to Bacteroides thetaiotaomicron thymidine kinase BT2275 SWALL:Q8A5G4 (EMBL:AE016935) (199 aa) fasta scores: E(): 5.5e-69, 92.42% id in 198 aa, and to Bacillus cereus thymidine kinase bc5330 SWALL:Q814U0 (EMBL:AE017015) (195 aa) fasta scores: E(): 4.1e-33, 49.46% id in 188 aa; putative thymidine kinase 700145 tdk 3287448 tdk Bacteroides fragilis NCTC 9343 putative thymidine kinase YP_210293.1 699546 R 272559 CDS YP_210294.1 60680150 3288839 700225..700989 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2274 SWALL:Q8A5G5 (EMBL:AE016935) (241 aa) fasta scores: E(): 3e-22, 45.52% id in 246 aa; hypothetical protein 700989 3288839 BF9343_0557 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210294.1 700225 D 272559 CDS YP_210295.1 60680151 3288310 701009..701683 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron methyltransferase BT2273 SWALL:AAO77380 (EMBL:AE016935) (224 aa) fasta scores: E(): 4.9e-80, 92.85% id in 224 aa, and to Anabaena sp. tetrapyrrole methylase family protein ALL4680 SWALL:Q8YN88 (EMBL:AP003597) (285 aa) fasta scores: E(): 6.6e-40, 48.41% id in 221 aa, and to Clostridium perfringens hypothetical protein CPE0280 SWALL:Q8XNQ2 (EMBL:AP003186) (280 aa) fasta scores: E(): 1e-39, 49.77% id in 225 aa; putative tetrapyrrole (corrin/porphyrin) methylase 701683 3288310 BF9343_0558 Bacteroides fragilis NCTC 9343 putative tetrapyrrole (corrin/porphyrin) methylase YP_210295.1 701009 D 272559 CDS YP_210296.1 60680152 3288631 701719..702576 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2272 SWALL:AAO77379 (EMBL:AE016935) (284 aa) fasta scores: E(): 8.7e-70, 87.01% id in 285 aa, and to Chlorobium tepidum hypothetical protein CT1178 SWALL:Q8KD76 (EMBL:AE012879) (281 aa) fasta scores: E(): 0.00079, 25.75% id in 299 aa; hypothetical protein 702576 3288631 BF9343_0559 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210296.1 701719 D 272559 CDS YP_210297.1 60680153 3288817 702666..703358 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron haloacid dehalogenase-like hydrolase BT2271 SWALL:AAO77378 (EMBL:AE016935) (230 aa) fasta scores: E(): 3.8e-74, 79.13% id in 230 aa, and to Clostridium perfringens hypothetical protein CPE0762 SWALL:Q8XMC7 (EMBL:AP003188) (230 aa) fasta scores: E(): 1.8e-16, 29.48% id in 234 aa, and to Yersinia pestis haloacid dehalogenase-like hydrolase family protein YPO2295 or Y2128 SWALL:Q8ZE87 (EMBL:AJ414151) (224 aa) fasta scores: E(): 2e-16, 32.32% id in 232 aa; putative haloacid dehalogenase-like hydrolase protein 703358 3288817 BF9343_0560 Bacteroides fragilis NCTC 9343 putative haloacid dehalogenase-like hydrolase protein YP_210297.1 702666 D 272559 CDS YP_210298.1 60680154 3288603 703415..704059 1 NC_003228.3 Similar to Thermococcus sp. small neutral amino acid transporter A SnatA SWALL:Q8J305 (EMBL:AB093585) (216 aa) fasta scores: E(): 3.9e-25, 35.78% id in 204 aa, and to Bacteroides thetaiotaomicron integral membrane protein BT2270 SWALL:AAO77377 (EMBL:AE016935) (219 aa) fasta scores: E(): 4.2e-74, 90.65% id in 214 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative integral membrane protein BT1108 SWALL:AAO76215 (EMBL:AE016930) (241 aa) fasta scores: E(): 4.8e-51, 63.03% id in 211 aa; putative amino acid transporter 704059 3288603 BF9343_0561 Bacteroides fragilis NCTC 9343 putative amino acid transporter YP_210298.1 703415 D 272559 CDS YP_210299.1 60680155 3288633 complement(704163..705758) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2033 SWALL:AAO77140 (EMBL:AE016934) (520 aa) fasta scores: E(): 9.8e-72, 54.73% id in 528 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2259 SWALL:AAO77366 (EMBL:AE016935) (488 aa) fasta scores: E(): 1.9e-07, 25.58% id in 516 aa; hypothetical protein 705758 3288633 BF9343_0562 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210299.1 704163 R 272559 CDS YP_210300.1 60680156 3288342 complement(705770..>708751) 1 NC_003228.3 Similar (although not the N-terminal region) to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2032 SWALL:Q8A654 (EMBL:AE016934) (955 aa) fasta scores: E(): 0, 66.52% id in 962 aa, and to Bacteroides fragilis outer membrane protein Omp121 SWALL:Q93TH9 (EMBL:AF357210) (1125 aa) fasta scores: E(): 1.6e-47, 28.34% id in 1083 aa. Note: This CDS does not have a proper start codon, but the first 20 amino acids is a 60bp inverted repeat, marked for invertible region CC. This involves possible phase variation or a recombination site within this cluster with BF0594 that has a proper start codon with the 60bp inverted repeat further into the CDS; putative surface membrane protein >708751 3288342 BF9343_0563 Bacteroides fragilis NCTC 9343 putative surface membrane protein YP_210300.1 705770 R 272559 CDS YP_210301.1 60680157 3288357 complement(709232..710734) 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen B RagB SWALL:Q9ZA59 (EMBL:AJ130872) (501 aa) fasta scores: E(): 4.9e-06, 24.09% id in 523 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2365 SWALL:AAO77472 (EMBL:AE016935) (497 aa) fasta scores: E(): 3.8e-43, 36.96% id in 514 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2269 SWALL:AAO77376 (EMBL:AE016935) (469 aa) fasta scores: E(): 4.3e-21, 31.99% id in 497 aa; putative outer membrane receptor protein 710734 3288357 BF9343_0564 Bacteroides fragilis NCTC 9343 putative outer membrane receptor protein YP_210301.1 709232 R 272559 CDS YP_210302.1 60680158 3288469 complement(710756..>713614) 1 NC_003228.3 Similar (although not the N-terminal region) to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2364 SWALL:Q8A578 (EMBL:AE016935) (1025 aa) fasta scores: E(): 2e-135, 43.35% id in 971 aa, and to Bacteroides thetaiotaomicron outer membrane protein Omp121 BT2264 SWALL:Q8A5H5 (EMBL:AE016935) (984 aa) fasta scores: E(): 8.9e-24, 26.07% id in 1028 aa. Note: This CDS does not have a proper start codon, but the first 20 amino acids is a 60bp inverted repeat, marked for invertible region CC. This involves possible phase variation or a recombination site within this cluster with BF0594 that has a proper start codon with this 60bp inverted repeat further into the CDS; putative surface membrane protein >713614 3288469 BF9343_0565 Bacteroides fragilis NCTC 9343 putative surface membrane protein YP_210302.1 710756 R 272559 CDS YP_210303.1 60680159 3288711 complement(714211..715392) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis transposase BipH SWALL:Q9ZI85 (EMBL:AF038866) (410 aa) fasta scores: E(): 2.4e-16, 28.53% id in 396 aa, and to Bacteroides thetaiotaomicron integrase protein BT2267 SWALL:AAO77374 (EMBL:AE016935) (396 aa) fasta scores: E(): 1.2e-112, 75.06% id in 389 aa, and to Bacteroides thetaiotaomicron transposase BT0076 SWALL:AAO75183 (EMBL:AE016926) (410 aa) fasta scores: E(): 1.1e-19, 29.7% id in 404 aa; putative integrase/transposase 715392 3288711 BF9343_0566 Bacteroides fragilis NCTC 9343 putative integrase/transposase YP_210303.1 714211 R 272559 CDS YP_210304.1 60680160 3288717 715846..718881 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2364 SWALL:Q8A578 (EMBL:AE016935) (1025 aa) fasta scores: E(): 4.6e-157, 46.98% id in 1028 aa, and to Porphyromonas gingivalis W83 RagA protein or PG0185 SWALL:AAQ65420 (EMBL:AE017172) (1017 aa) fasta scores: E(): 2.2e-39, 30.84% id in 1057 aa. Note: This CDS contains from residue 68 a 60bp inverted repeat unit, marked for invertible region CC; hypothetical protein 718881 3288717 BF9343_0567 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210304.1 715846 D 272559 CDS YP_210305.1 60680161 3288719 718899..720413 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database matches, such as putative outer membrane protein, probably involved in nutrient binding BT2365 SWALL:Q8A577 (EMBL:AE016935) (497 aa) fasta scores: E(): 2.6e-57, 38.56% id in 516 aa, and putative outer membrane protein, probably involved in nutrient binding BT3311 SWALL:Q8A2J4 (EMBL:AE016940) (506 aa) fasta scores: E(): 5.3e-12, 23.59% id in 534 aa; hypothetical protein 720413 3288719 BF9343_0568 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210305.1 718899 D 272559 CDS YP_210306.1 60680162 3288468 <720940..723879 1 NC_003228.3 Similar (although not the N-terminal region) to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 5.8e-53, 27.4% id in 1018 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3090 SWALL:Q8A365 (EMBL:AE016938) (999 aa) fasta scores: E(): 5.8e-46, 31.69% id in 997 aa. Note: This CDS does not have a proper start codon, but the first 20 amino acids is a 60bp inverted repeat, marked for invertible region CC. This involves possible phase variation or a recombination site within this cluster with BF0594 that has a proper start codon with this 60bp inverted repeat further into the CDS; putative surface membrane protein 723879 3288468 BF9343_0569 Bacteroides fragilis NCTC 9343 putative surface membrane protein YP_210306.1 <720940 D 272559 CDS YP_210307.1 60680163 3288605 723914..725308 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries, such as putative outer membrane protein, probably involved in nutrient binding BT1439 SWALL:Q8A7T5 (EMBL:AE016931) (493 aa) fasta scores: E(): 1e-10, 27.17% id in 449 aa, and putative outer membrane protein, probably involved in nutrient binding BT2269 SWALL:Q8A5H0 (EMBL:AE016935) (469 aa) fasta scores: E(): 1.4e-09, 26.59% id in 485 aa; hypothetical protein 725308 3288605 BF9343_0570 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210307.1 723914 D 272559 CDS YP_210308.1 60680164 3288838 725425..726678 1 NC_003228.3 Similar to Escherichia coli GTP-binding protein HflX or B4173 SWALL:HFLX_ECOLI (SWALL:P25519) (426 aa) fasta scores: E(): 1e-37, 44.37% id in 338 aa, and to Bacteroides thetaiotaomicron GTP-binding protein BT2258 SWALL:AAO77365 (EMBL:AE016935) (419 aa) fasta scores: E(): 5.6e-132, 96.65% id in 419 aa, and to Chlorobium tepidum GTP-binding protein HflX or CT1384 SWALL:Q8KCN0 (EMBL:AE012896) (441 aa) fasta scores: E(): 1.9e-41, 46.74% id in 415 aa; putative GTP-binding protein 726678 3288838 BF9343_0571 Bacteroides fragilis NCTC 9343 putative GTP-binding protein YP_210308.1 725425 D 272559 CDS YP_210309.1 60680165 3288150 726703..728694 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2257 SWALL:AAO77364 (EMBL:AE016935) (663 aa) fasta scores: E(): 0, 88.48% id in 660 aa, and to Treponema pallidum hypothetical protein Tp0851 SWALL:Y851_TREPA (SWALL:O83823) (724 aa) fasta scores: E(): 3e-13, 24.54% id in 599 aa; hypothetical protein 728694 3288150 BF9343_0572 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210309.1 726703 D 272559 CDS YP_210310.1 60680166 3288831 728748..731237 1 NC_003228.3 Similar to Streptomyces lividans aminopeptidase N PepN SWALL:AMPN_STRLI (SWALL:Q11010) (857 aa) fasta scores: E(): 1.8e-35, 27.8% id in 651 aa, and to Streptomyces avermitilis putative aminopeptidase N PepN or sav5395 SWALL:Q82CF5 (EMBL:AP005042) (857 aa) fasta scores: E(): 5.7e-36, 28.41% id in 651 aa, and to Streptomyces coelicolor aminopeptidase N PepN or sco2643 or sc8e4a.13 SWALL:Q9L1Z2 (EMBL:AL939113) (857 aa) fasta scores: E(): 1.8e-35, 27.8% id in 651 aa; putative aminopeptidase 731237 3288831 BF9343_0573 Bacteroides fragilis NCTC 9343 putative aminopeptidase YP_210310.1 728748 D 272559 CDS YP_210311.1 60680167 3287921 731661..733307 1 NC_003228.3 Similar to Escherichia coli fumarate hydratase class I, anaerobic FumB or B4122 SWALL:FUMB_ECOLI (SWALL:P14407) (548 aa) fasta scores: E(): 5.8e-170, 76.96% id in 547 aa, and to Bacteroides thetaiotaomicron fumarate hydratase class I, anaerobic BT2256 SWALL:AAO77363 (EMBL:AE016935) (544 aa) fasta scores: E(): 6.3e-209, 95.01% id in 542 aa, and to Escherichia coli O6 fumarate hydratase class I, anaerobic FumB or C5127 SWALL:Q8FAU2 (EMBL:AE016771) (548 aa) fasta scores: E(): 5.1e-171, 77.14% id in 547 aa; putative fumarate hydratase class I, anaerobic 733307 fumB 3287921 fumB Bacteroides fragilis NCTC 9343 putative fumarate hydratase class I, anaerobic YP_210311.1 731661 D 272559 CDS YP_210312.1 60680168 3288822 733440..734585 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2255 SWALL:AAO77362 (EMBL:AE016935) (386 aa) fasta scores: E(): 6.9e-130, 80.15% id in 378 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1850 SWALL:AAO76957 (EMBL:AE016933) (362 aa) fasta scores: E(): 3.6e-26, 31.44% id in 388 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4450 SWALL:AAO79555 (EMBL:AE016945) (411 aa) fasta scores: E(): 7.1e-22, 50.99% id in 404 aa, and to Ralstonia solanacearum hypothetical transmembrane protein RSC3292 or RS02521 SWALL:Q8XUA1 (EMBL:AL646074) (336 aa) fasta scores: E(): 2.8e-07, 28.99% id in 369 aa; putative transmembrane acyl-transferase protein 734585 3288822 BF9343_0575 Bacteroides fragilis NCTC 9343 putative transmembrane acyl-transferase protein YP_210312.1 733440 D 272559 CDS YP_210313.1 60680169 3288810 734610..736766 1 NC_003228.3 Similar to Homo sapiens alpha-N-acetylglucosaminidase precursor NagLU or ufhsd1 SWALL:ANAG_HUMAN (SWALL:P54802) (743 aa) fasta scores: E(): 2.2e-74, 35.35% id in 724 aa, and to Bacteroides thetaiotaomicron alpha-N-acetylglucosaminidase precursor BT4359 SWALL:Q89ZL8 (EMBL:AE016945) (744 aa) fasta scores: E(): 3.2e-176, 56.25% id in 736 aa, and to Clostridium perfringens probable alpha-N-acetylglucosaminidase CPE0866 SWALL:Q8XM24 (EMBL:AP003188) (2104 aa) fasta scores: E(): 8.6e-100, 37.62% id in 707 aa; putative alpha-N-acetylglucosaminidase 736766 3288810 BF9343_0576 Bacteroides fragilis NCTC 9343 putative alpha-N-acetylglucosaminidase YP_210313.1 734610 D 272559 CDS YP_210314.1 60680170 3288782 complement(736859..738526) 1 NC_003228.3 Similar to Bacillus cereus putative amino acid transporter YfnA protein SWALL:Q9K318 (EMBL:AJ007795) (471 aa) fasta scores: E(): 7e-47, 39.7% id in 481 aa, and to Xanthomonas axonopodis cationic amino acid transporter YhdG or Xac1841 SWALL:Q8PLF9 (EMBL:AE011817) (476 aa) fasta scores: E(): 1.1e-86, 46.89% id in 467 aa, and to Xanthomonas campestris cationic amino acid transporter YhdG or XCC1821 SWALL:Q8P9N2 (EMBL:AE012284) (476 aa) fasta scores: E(): 1.3e-85, 46.25% id in 467 aa; putative amino acid transporter 738526 3288782 BF9343_0577 Bacteroides fragilis NCTC 9343 putative amino acid transporter YP_210314.1 736859 R 272559 CDS YP_210315.1 60680171 3288796 complement(739054..740379) 1 NC_003228.3 Similar to Acinetobacter baumannii AdeC outer membrane protein SWALL:Q93E18 (EMBL:AF370885) (465 aa) fasta scores: E(): 1.9e-07, 22.64% id in 424 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein TolC BT2253 SWALL:AAO77360 (EMBL:AE016935) (448 aa) fasta scores: E(): 2.6e-122, 73.92% id in 441 aa, and to Shewanella oneidensis agglutination protein AggA or so4320 SWALL:Q8E9G3 (EMBL:AE015865) (471 aa) fasta scores: E(): 3.6e-15, 22.78% id in 452 aa; putative outer membrane protein 740379 3288796 BF9343_0578 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210315.1 739054 R 272559 CDS YP_210316.1 60680172 3288806 complement(740376..743411) 1 NC_003228.3 Similar to Escherichia coli multidrug transporter MdtC SWALL:BAC06609 (EMBL:AB089189) (1025 aa) fasta scores: E(): 1.6e-99, 30.47% id in 1027 aa, and to Bacteroides thetaiotaomicron multidrug efflux membrane fusion protein BT2252 SWALL:AAO77359 (EMBL:AE016935) (1010 aa) fasta scores: E(): 0, 92.87% id in 1010 aa, and to Vibrio cholerae multidrug resistance protein, putative vc0914 SWALL:Q9KTI8 (EMBL:AE004175) (1036 aa) fasta scores: E(): 3.6e-131, 37.51% id in 1013 aa; putative AcrB/AcrD/AcrF family efflux transporter 743411 3288806 BF9343_0579 Bacteroides fragilis NCTC 9343 putative AcrB/AcrD/AcrF family efflux transporter YP_210316.1 740376 R 272559 CDS YP_210317.1 60680173 3288832 complement(743426..744508) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative membrane fusion protein precursor BT2251 SWALL:AAO77358 (EMBL:AE016935) (360 aa) fasta scores: E(): 4.8e-100, 79.72% id in 360 aa, and to Shewanella oneidensis HlyD family-related protein so1881 SWALL:Q8EFT5 (EMBL:AE015631) (360 aa) fasta scores: E(): 5.3e-20, 29.86% id in 298 aa, and to Pseudomonas aeruginosa probable RND efflux membrane fusion protein precursor pa4206 SWALL:Q9HWH5 (EMBL:AE004837) (370 aa) fasta scores: E(): 7.1e-20, 30.27% id in 370 aa; putative HlyD-family efflux transporter component 744508 3288832 BF9343_0580 Bacteroides fragilis NCTC 9343 putative HlyD-family efflux transporter component YP_210317.1 743426 R 272559 CDS YP_210318.1 60680174 3288821 complement(744612..745925) 1 NC_003228.3 Similar to Pasteurella haemolytica leukotoxin secretion protein D LktD SWALL:HLYD_PASHA (SWALL:P16534) (478 aa) fasta scores: E(): 3.8e-12, 23.58% id in 424 aa, and to Bacteroides thetaiotaomicron putative hemolysin secretion protein BT4289 SWALL:AAO79394 (EMBL:AE016944) (416 aa) fasta scores: E(): 2.3e-25, 26.85% id in 417 aa, and to Pasteurella haemolytica LktD SWALL:Q934A1 (EMBL:AF314503) (472 aa) fasta scores: E(): 7.2e-12, 23.84% id in 411 aa; putative HlyD-family transporter 745925 3288821 BF9343_0581 Bacteroides fragilis NCTC 9343 putative HlyD-family transporter YP_210318.1 744612 R 272559 CDS YP_210319.1 60680175 3288824 complement(745937..748108) 1 NC_003228.3 Similar to Riemerella anatipestifer ABC transporter SWALL:Q9AM85 (EMBL:AF327734) (678 aa) fasta scores: E(): 1.2e-88, 38.49% id in 665 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT4288 SWALL:AAO79393 (EMBL:AE016944) (741 aa) fasta scores: E(): 4.4e-125, 45.31% id in 726 aa, and to Anabaena sp. ABC transporter ATP-binding protein Alr1927 SWALL:Q8YVP7 (EMBL:AP003587) (1011 aa) fasta scores: E(): 6.9e-73, 33.1% id in 725 aa; putative ATP-binding transporter component 748108 3288824 BF9343_0582 Bacteroides fragilis NCTC 9343 putative ATP-binding transporter component YP_210319.1 745937 R 272559 CDS YP_210320.1 60680176 3288823 complement(748353..749072) 1 NC_003228.3 Similar to Bacillus halodurans hypothetical protein BH0560 SWALL:Q9KFC4 (EMBL:AP001508) (237 aa) fasta scores: E(): 4.3e-06, 28.16% id in 213 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob0654 SWALL:Q8ESI0 (EMBL:AP004595) (232 aa) fasta scores: E(): 0.00012, 24.2% id in 219 aa; putative transmembrane amino-terminal protease 749072 3288823 BF9343_0583 Bacteroides fragilis NCTC 9343 putative transmembrane amino-terminal protease YP_210320.1 748353 R 272559 CDS YP_210321.1 60680177 3288813 complement(749158..749496) 1 NC_003228.3 no significant database matches; hypothetical protein 749496 3288813 BF9343_0584 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210321.1 749158 R 272559 CDS YP_210322.1 60680178 3288799 complement(749725..751287) 1 NC_003228.3 no significant database matches; possible glycosyl transferase 751287 3288799 BF9343_0585 Bacteroides fragilis NCTC 9343 possible glycosyl transferase YP_210322.1 749725 R 272559 CDS YP_210323.1 60680179 3288825 complement(751284..752537) 1 NC_003228.3 no significant database matches; hypothetical protein 752537 3288825 BF9343_0586 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210323.1 751284 R 272559 CDS YP_210324.1 60680180 3288798 complement(752651..752869) 1 NC_003228.3 no significant database matches; hypothetical protein 752869 3288798 BF9343_0587 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210324.1 752651 R 272559 CDS YP_210325.1 60680181 3288801 complement(753480..754412) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative GTPase BT2250 SWALL:AAO77357 (EMBL:AE016935) (310 aa) fasta scores: E(): 2.2e-99, 88.38% id in 310 aa, and to Chlorobium tepidum hypothetical protein CT1574 SWALL:Q8KC52 (EMBL:AE012913) (311 aa) fasta scores: E(): 8.1e-34, 39.1% id in 312 aa, and to Shewanella oneidensis conserved hypothetical protein Tigr00157 so0591 SWALL:Q8EJ79 (EMBL:AE015506) (354 aa) fasta scores: E(): 4.8e-29, 33.65% id in 309 aa; putative ATP/GTP binding protein 754412 3288801 BF9343_0588 Bacteroides fragilis NCTC 9343 putative ATP/GTP binding protein YP_210325.1 753480 R 272559 CDS YP_210326.1 60680182 3285347 complement(754508..755068) 1 NC_003228.3 Similar to Thermus thermophilus ribosome recycling factor Frr SWALL:RRF_THETH (SWALL:Q9WX76) (185 aa) fasta scores: E(): 6.1e-24, 43.4% id in 182 aa, and to Bacteroides thetaiotaomicron ribosome recycling factor BT2249 SWALL:AAO77356 (EMBL:AE016935) (186 aa) fasta scores: E(): 6.9e-57, 91.39% id in 186 aa, and to Ralstonia solanacearum ribosome recycling factor frr or rrf or RSC1407 or RS05285 SWALL:RRF_RALSO (SWALL:Q8XZI8) (186 aa) fasta scores: E(): 2e-28, 47.84% id in 186 aa; putative ribosome recycling factor 755068 frr 3285347 frr Bacteroides fragilis NCTC 9343 putative ribosome recycling factor YP_210326.1 754508 R 272559 CDS YP_210327.1 60680183 3288784 complement(755195..756253) 1 NC_003228.3 no significant database matches; hypothetical protein 756253 3288784 BF9343_0590 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210327.1 755195 R 272559 CDS YP_210328.1 60680184 3288746 complement(756265..756816) 1 NC_003228.3 Similar to the C-terminus of Anabaena sp. hypothetical protein ALL3278 SWALL:Q8YS14 (EMBL:AP003592) (272 aa) fasta scores: E(): 8.1e-06, 29.07% id in 141 aa; putative ErfK/YbiS/YcfS/YnhG family protein 756816 3288746 BF9343_0591 Bacteroides fragilis NCTC 9343 putative ErfK/YbiS/YcfS/YnhG family protein YP_210328.1 756265 R 272559 CDS YP_210329.1 60680185 3288757 complement(756827..759622) 1 NC_003228.3 no significant database matches; hypothetical protein 759622 3288757 BF9343_0592 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210329.1 756827 R 272559 CDS YP_210330.1 60680186 3285333 complement(759650..761239) 1 NC_003228.3 Similar to Halobacterium mediterranei chaperone protein DnaK SWALL:DNAK_HALME (SWALL:Q9HHB9) (625 aa) fasta scores: E(): 2.1e-42, 37.42% id in 497 aa, and to Clostridium acetobutylicum DnaK protein CAC0472 SWALL:Q97LT2 (EMBL:AE007561) (551 aa) fasta scores: E(): 1.3e-57, 40.18% id in 550 aa, and to Haloarcula marismortui chaperone protein DnaK SWALL:DNAK_HALMA (SWALL:Q01100) (635 aa) fasta scores: E(): 1e-41, 37.4% id in 516 aa; putative chaperone protein 761239 dnaK1 3285333 dnaK1 Bacteroides fragilis NCTC 9343 putative chaperone protein YP_210330.1 759650 R 272559 CDS YP_210331.1 60680187 3288787 complement(761279..762127) 1 NC_003228.3 Similar to Clostridium acetobutylicum GrpE protein Hsp-70 cofactor CAC0471 SWALL:Q97LT3 (EMBL:AE007561) (190 aa) fasta scores: E(): 0.056, 25.4% id in 185 aa; possible Hsp-70 cofactor 762127 3288787 BF9343_0594 Bacteroides fragilis NCTC 9343 possible Hsp-70 cofactor YP_210331.1 761279 R 272559 CDS YP_210332.1 60680188 3288702 763205..764365 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 0.0001, 19.88% id in 337 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2848 SWALL:AAO77954 (EMBL:AE016937) (402 aa) fasta scores: E(): 0.00019, 23.36% id in 381 aa; hypothetical protein 764365 3288702 BF9343_0595 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210332.1 763205 D 272559 CDS YP_210333.1 60680189 3288765 complement(764612..765322) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri uridylate kinase PyrH or SmbA or B0171 or C0207 or Z0182 or ECS0173 or SF0161 or S0164 SWALL:PYRH_ECOLI (SWALL:P29464) (240 aa) fasta scores: E(): 3.9e-43, 54.97% id in 231 aa, and to Bacteroides thetaiotaomicron uridylate kinase BT2242 SWALL:AAO77349 (EMBL:AE016935) (236 aa) fasta scores: E(): 1.5e-82, 97.88% id in 236 aa, and to Fusobacterium nucleatum uridylate kinase PyrH or FN1622 SWALL:PYRH_FUSNN (SWALL:Q8R6G5) (239 aa) fasta scores: E(): 5.8e-46, 58.44% id in 231 aa; putative uridylate kinase 765322 3288765 BF9343_0596 Bacteroides fragilis NCTC 9343 putative uridylate kinase YP_210333.1 764612 R 272559 CDS YP_210334.1 60680190 3285122 complement(765371..766684) 1 NC_003228.3 Similar to Escherichia coli DNA-damage-inducible protein F DinF or B4044 SWALL:DINF_ECOLI (SWALL:P28303) (459 aa) fasta scores: E(): 3e-48, 36.42% id in 442 aa, and to Bacteroides thetaiotaomicron DNA-damage-inducible protein F BT2241 SWALL:AAO77348 (EMBL:AE016935) (439 aa) fasta scores: E(): 1e-136, 78.67% id in 436 aa, and to Vibrio cholerae DNA-damage-inducible protein F vc0090 SWALL:Q9KVQ1 (EMBL:AE004100) (454 aa) fasta scores: E(): 4.5e-60, 39.85% id in 419 aa; putative DNA-damage-inducible protein F 766684 dinF 3285122 dinF Bacteroides fragilis NCTC 9343 putative DNA-damage-inducible protein F YP_210334.1 765371 R 272559 CDS YP_210335.1 60680191 3288802 767283..768206 1 NC_003228.3 Similar to Flavobacterium keratolyticus endo-beta-galactosidase SWALL:Q9ZG90 (EMBL:AF083896) (422 aa) fasta scores: E(): 8.6e-06, 24.26% id in 272 aa, and to Caulobacter crescentus beta-glucanase cc0380 SWALL:Q9AB54 (EMBL:AE005711) (301 aa) fasta scores: E(): 5e-07, 25.92% id in 297 aa; putative endo-beta-galactosidase 768206 3288802 BF9343_0598 Bacteroides fragilis NCTC 9343 putative endo-beta-galactosidase YP_210335.1 767283 D 272559 CDS YP_210336.1 60680192 3288779 768312..769004 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TPR-domain containing protein BT2240 SWALL:AAO77347 (EMBL:AE016935) (227 aa) fasta scores: E(): 2.1e-52, 62.99% id in 227 aa; hypothetical protein 769004 3288779 BF9343_0599 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210336.1 768312 D 272559 CDS YP_210337.1 60680193 3288766 complement(769031..770341) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0171 SWALL:AAO75278 (EMBL:AE016926) (427 aa) fasta scores: E(): 1.1e-45, 42.92% id in 438 aa; hypothetical protein 770341 3288766 BF9343_0600 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210337.1 769031 R 272559 CDS YP_210338.1 60680194 3288774 complement(770407..771162) 1 NC_003228.3 Similar to Bacillus subtilis BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-coA-carboxylase] synthetase BirA SWALL:BIRA_BACSU (SWALL:P42975) (325 aa) fasta scores: E(): 2e-10, 29.3% id in 215 aa, and to Bacteroides thetaiotaomicron putative biotin-- BT2238 SWALL:AAO77345 (EMBL:AE016935) (248 aa) fasta scores: E(): 3.2e-63, 65.04% id in 246 aa, and to Aquifex aeolicus biotin BirA or AQ_566 SWALL:O66837 (EMBL:AE000696) (233 aa) fasta scores: E(): 1.3e-15, 34.93% id in 229 aa; putative biotin/lipoate A/B protein ligase family protein 771162 3288774 BF9343_0601 Bacteroides fragilis NCTC 9343 putative biotin/lipoate A/B protein ligase family protein YP_210338.1 770407 R 272559 CDS YP_210339.1 60680195 3288747 complement(771146..771502) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2237 SWALL:AAO77344 (EMBL:AE016935) (118 aa) fasta scores: E(): 6.7e-37, 80.5% id in 118 aa, and to Streptomyces coelicolor hypothetical protein sco2535 or scc77.02 SWALL:Q9RDF6 (EMBL:AL939113) (124 aa) fasta scores: E(): 6.5e-11, 38.79% id in 116 aa, and to Streptomyces lavendulae MmcQ SWALL:Q9X5T5 (EMBL:AF127374) (123 aa) fasta scores: E(): 3.2e-08, 30.7% id in 114 aa; hypothetical protein 771502 3288747 BF9343_0602 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210339.1 771146 R 272559 CDS YP_210340.1 60680196 3288783 complement(771509..771874) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2236 SWALL:AAO77343 (EMBL:AE016935) (121 aa) fasta scores: E(): 4.2e-36, 79.33% id in 121 aa, and to Bifidobacterium longum hypothetical protein Bl0935 bl0935 SWALL:Y935_BIFLO (SWALL:Q8G5R9) (124 aa) fasta scores: E(): 5.7e-08, 35.2% id in 125 aa, and to Clostridium perfringens hypothetical protein CPE1705 SWALL:YH05_CLOPE (SWALL:Q8XJQ1) (122 aa) fasta scores: E(): 2.3e-07, 31.66% id in 120 aa; hypothetical protein 771874 3288783 BF9343_0603 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210340.1 771509 R 272559 CDS YP_210341.1 60680197 3288692 772012..772245 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2235 SWALL:AAO77342 (EMBL:AE016935) (77 aa) fasta scores: E(): 5.5e-24, 87.01% id in 77 aa; hypothetical protein 772245 3288692 BF9343_0604 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210341.1 772012 D 272559 CDS YP_210342.1 60680198 3288749 772250..772687 1 NC_003228.3 Similar to Staphylococcus epidermidis Cu binding protein se0327 SWALL:Q8CMN3 (EMBL:AE016745) (168 aa) fasta scores: E(): 2.1e-21, 49.33% id in 150 aa, and to Bacteroides thetaiotaomicron putative cytosine/adenosine deaminase BT2234 SWALL:AAO77341 (EMBL:AE016935) (147 aa) fasta scores: E(): 5e-54, 95.83% id in 144 aa, and to Porphyromonas gingivalis Orf150 protein SWALL:Q51833 (EMBL:X95938) (150 aa) fasta scores: E(): 9.6e-32, 58.45% id in 142 aa; possible cytosine deaminase 772687 3288749 BF9343_0605 Bacteroides fragilis NCTC 9343 possible cytosine deaminase YP_210342.1 772250 D 272559 CDS YP_210343.1 60680199 3288725 complement(772704..772991) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2233 SWALL:AAO77340 (EMBL:AE016935) (99 aa) fasta scores: E(): 2.1e-10, 43.87% id in 98 aa; hypothetical protein 772991 3288725 BF9343_0606 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210343.1 772704 R 272559 CDS YP_210344.1 60680200 3288752 complement(773054..773764) 1 NC_003228.3 Similar to Rhizobium loti phosphatidylserine synthase MLR7822 SWALL:Q984V9 (EMBL:AP003012) (248 aa) fasta scores: E(): 1.5e-12, 34.17% id in 237 aa, and to Bacteroides thetaiotaomicron CDP-diacylglycerol--serine O-phosphatidyltransferase BT2232 SWALL:AAO77339 (EMBL:AE016935) (235 aa) fasta scores: E(): 2.6e-68, 72.57% id in 237 aa, and to Fusobacterium nucleatum CDP-diacylglycerol--serine O-phosphatidyltransferase FN0991 SWALL:Q8REU8 (EMBL:AE010606) (261 aa) fasta scores: E(): 4.2e-14, 31.33% id in 233 aa; putative phosphatidylserine synthase 773764 3288752 BF9343_0607 Bacteroides fragilis NCTC 9343 putative phosphatidylserine synthase YP_210344.1 773054 R 272559 CDS YP_210345.1 60680201 3288720 complement(773774..774460) 1 NC_003228.3 Similar to Rhizobium meliloti phosphatidylserine decarboxylase proenzyme Psd or r01121 or SMC00551 SWALL:Q9FDI9 (EMBL:AF247564) (232 aa) fasta scores: E(): 1.2e-19, 35.74% id in 221 aa, and to Bacteroides thetaiotaomicron phosphatidylserine decarboxylase proenzyme Psd or BT2231 SWALL:AAO77338 (EMBL:AE016935) (228 aa) fasta scores: E(): 4.3e-82, 88.15% id in 228 aa, and to Brucella suis phosphatidylserine decarboxylase proenzyme Psd or Br0443 SWALL:Q8G285 (EMBL:AE014354) (232 aa) fasta scores: E(): 1.1e-23, 39.72% id in 219 aa; putative phosphatidylserine decarboxylase proenzyme 774460 3288720 BF9343_0608 Bacteroides fragilis NCTC 9343 putative phosphatidylserine decarboxylase proenzyme YP_210345.1 773774 R 272559 CDS YP_210346.1 60680202 3285131 774624..778418 1 NC_003228.3 Similar to Thermus aquaticus DNA polymerase III alpha subunit DnaE SWALL:DP3A_THEAQ (SWALL:Q9XDH5) (1220 aa) fasta scores: E(): 8.1e-114, 36.68% id in 1292 aa, and to Bacteroides thetaiotaomicron DNA polymerase III alpha subunit BT2230 SWALL:AAO77337 (EMBL:AE016935) (1267 aa) fasta scores: E(): 0, 89.82% id in 1268 aa, and to Streptomyces coelicolor DNA polymerase III alpha subunit DnaE or sco2064 or sc4g6.33C SWALL:DP3A_STRCO (SWALL:Q9Z618) (1179 aa) fasta scores: E(): 2.1e-101, 34.55% id in 1253 aa; putative DNA polymerase III alpha subunit 778418 dnaE 3285131 dnaE Bacteroides fragilis NCTC 9343 putative DNA polymerase III alpha subunit YP_210346.1 774624 D 272559 CDS YP_210347.1 60680203 3285419 778479..778793 1 NC_003228.3 Similar to Anabaena sp. thioredoxin 1 TrxA or ALR0052 SWALL:THI1_ANASP (SWALL:P06544) (106 aa) fasta scores: E(): 1.6e-19, 50% id in 104 aa, and to Bacteroides thetaiotaomicron thioredoxin BT2229 SWALL:AAO77336 (EMBL:AE016935) (104 aa) fasta scores: E(): 4.1e-34, 81.73% id in 104 aa, and to C-terminus of Pisum sativum thioredoxin M-type, chloroplast precursor SWALL:THIM_PEA (SWALL:P48384) (172 aa) fasta scores: E(): 1.3e-19, 53.46% id in 101 aa; putative thioredoxin 778793 trxA 3285419 trxA Bacteroides fragilis NCTC 9343 putative thioredoxin YP_210347.1 778479 D 272559 CDS YP_210348.1 60680204 3288724 778820..779155 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2228 SWALL:AAO77335 (EMBL:AE016935) (111 aa) fasta scores: E(): 5.1e-34, 87.38% id in 111 aa; hypothetical protein 779155 3288724 BF9343_0611 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210348.1 778820 D 272559 CDS YP_210349.1 60680205 3288735 complement(779378..780109) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2224 SWALL:AAO77331 (EMBL:AE016935) (241 aa) fasta scores: E(): 7.2e-61, 68.72% id in 243 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4318 pa4318 SWALL:Q9HW83 (EMBL:AE004848) (265 aa) fasta scores: E(): 1.4e-08, 36.99% id in 173 aa; putative transmembrane protein 780109 3288735 BF9343_0612 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210349.1 779378 R 272559 CDS YP_210350.1 60680206 3288679 781031..781993 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative integral membrane protein BT2216 SWALL:AAO77323 (EMBL:AE016935) (320 aa) fasta scores: E(): 3.2e-100, 80.62% id in 320 aa, and to Bacillus halodurans hypothetical protein BH0733 SWALL:Q9KEW6 (EMBL:AP001509) (355 aa) fasta scores: E(): 1.6e-19, 28.12% id in 320 aa, and to Synechocystis sp. hypothetical protein Slr1478 SWALL:P74166 (EMBL:D90912) (317 aa) fasta scores: E(): 9.3e-19, 29.16% id in 312 aa; putative transmembrane protein 781993 3288679 BF9343_0613 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210350.1 781031 D 272559 CDS YP_210351.1 60680207 3288729 781974..782906 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2215 SWALL:AAO77322 (EMBL:AE016935) (310 aa) fasta scores: E(): 2.2e-75, 64.83% id in 310 aa; putative transmembrane protein 782906 3288729 BF9343_0614 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210351.1 781974 D 272559 CDS YP_210352.1 60680208 3288748 782917..783540 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2214 SWALL:AAO77321 (EMBL:AE016935) (204 aa) fasta scores: E(): 2.7e-49, 65.04% id in 206 aa; hypothetical protein 783540 3288748 BF9343_0615 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210352.1 782917 D 272559 CDS YP_210353.1 60680209 3288790 783537..784784 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2213 SWALL:AAO77320 (EMBL:AE016935) (424 aa) fasta scores: E(): 3.8e-47, 55.95% id in 420 aa; hypothetical protein 784784 3288790 BF9343_0616 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210353.1 783537 D 272559 CDS YP_210354.1 60680210 3288775 784869..785843 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron magnesium chelatase, subunit I, putative ATPase BT2212 SWALL:Q8A5M6 (EMBL:AE016935) (324 aa) fasta scores: E(): 1.7e-97, 87.96% id in 324 aa, and to Thermoanaerobacter tengcongensis MoxR-like ATPases TTE0367 SWALL:Q8RCQ1 (EMBL:AE013010) (314 aa) fasta scores: E(): 4e-52, 47.89% id in 309 aa, and to Oceanobacillus iheyensis methanol dehydrogenase regulatory protein Ob0713 SWALL:Q8ESC7 (EMBL:AP004595) (321 aa) fasta scores: E(): 1.1e-50, 45.65% id in 311 aa; putative methanol denhydrogenase-related protein 785843 3288775 BF9343_0617 Bacteroides fragilis NCTC 9343 putative methanol denhydrogenase-related protein YP_210354.1 784869 D 272559 CDS YP_210355.1 60680211 3288740 785846..787156 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2211 SWALL:AAO77318 (EMBL:AE016935) (436 aa) fasta scores: E(): 4.8e-141, 80.04% id in 436 aa, and to Pseudomonas syringae conserved hypothetical protein PSPTO4334 SWALL:AAO57785 (EMBL:AE016871) (447 aa) fasta scores: E(): 3.7e-35, 31.65% id in 398 aa, and to Synechocystis sp. hypothetical protein Slr2013 SWALL:P73233 (EMBL:D90904) (435 aa) fasta scores: E(): 9.4e-34, 29.66% id in 445 aa; putative transmembrane protein 787156 3288740 BF9343_0618 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210355.1 785846 D 272559 CDS YP_210356.1 60680212 3288712 complement(787148..787369) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2208 SWALL:AAO77315 (EMBL:AE016935) (74 aa) fasta scores: E(): 4.6e-19, 75.75% id in 66 aa; putative transmembrane protein 787369 3288712 BF9343_0619 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210356.1 787148 R 272559 CDS YP_210357.1 60680213 3288705 complement(787381..787800) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ATPase/GTPase BT2207 SWALL:AAO77314 (EMBL:AE016935) (137 aa) fasta scores: E(): 1.1e-44, 95.55% id in 135 aa, and to Thermoanaerobacter tengcongensis predicted ATPase or kinase TTE0535 SWALL:Q8RCA1 (EMBL:AE013024) (151 aa) fasta scores: E(): 2.9e-14, 38.93% id in 131 aa, and to Fusobacterium nucleatum ATP/GTP hydrolase FN0929 SWALL:Q8RF01 (EMBL:AE010600) (153 aa) fasta scores: E(): 1.8e-13, 38.68% id in 137 aa; putative ATP/GTP-binding transmembrane protein 787800 3288705 BF9343_0620 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding transmembrane protein YP_210357.1 787381 R 272559 CDS YP_210358.1 60680214 3288398 complement(787815..788624) 1 NC_003228.3 Similar to Streptococcus mutans component of ABC transporter SloB SWALL:Q9KIJ4 (EMBL:AF232688) (279 aa) fasta scores: E(): 3.3e-25, 32.22% id in 270 aa, and to Bacteroides thetaiotaomicron zinc ABC transporter, permease BT2206 SWALL:AAO77313 (EMBL:AE016935) (269 aa) fasta scores: E(): 1.5e-84, 85.82% id in 268 aa, and to Methanosarcina mazei zinc ABC transporter, permease protein MM1335 SWALL:Q8PX87 (EMBL:AE013366) (274 aa) fasta scores: E(): 8.5e-45, 47.56% id in 267 aa; putative ABC transporter membrane protein 788624 3288398 BF9343_0621 Bacteroides fragilis NCTC 9343 putative ABC transporter membrane protein YP_210358.1 787815 R 272559 CDS YP_210359.1 60680215 3288718 complement(788663..789085) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2205 SWALL:AAO77312 (EMBL:AE016935) (141 aa) fasta scores: E(): 1.6e-40, 77.37% id in 137 aa; hypothetical protein 789085 3288718 BF9343_0622 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210359.1 788663 R 272559 CDS YP_210360.1 60680216 3288524 789188..790189 1 NC_003228.3 Similar to Streptomyces coelicolor putative aminopeptidase sco4589 or scd20.07C SWALL:Q9F2X2 (EMBL:AL939120) (324 aa) fasta scores: E(): 2.4e-08, 34.55% id in 191 aa, and to Bacteroides thetaiotaomicron aminopeptidase BT2189 SWALL:AAO77296 (EMBL:AE016935) (340 aa) fasta scores: E(): 1.1e-109, 80.06% id in 331 aa, and to Xanthomonas axonopodis hypothetical protein Xac0026 SWALL:Q8PRD7 (EMBL:AE011625) (598 aa) fasta scores: E(): 1e-14, 35.64% id in 202 aa; putative aminopeptidase 790189 3288524 BF9343_0623 Bacteroides fragilis NCTC 9343 putative aminopeptidase YP_210360.1 789188 D 272559 CDS YP_210361.1 60680217 3288554 790197..791369 1 NC_003228.3 Similar to Bradyrhizobium japonicum BLL5531 protein SWALL:BAC50796 (EMBL:AP005955) (403 aa) fasta scores: E(): 2.9e-28, 31.26% id in 355 aa; hypothetical protein 791369 3288554 BF9343_0624 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210361.1 790197 D 272559 CDS YP_210362.1 60680218 3288620 791520..793805 1 NC_003228.3 Similar to Bacillus sp. M-90 alpha-1,2-mannosidase precursor aman2 from codon 406 to codon codon 745 SWALL:Q9WXI8 (EMBL:AB025248) (1976 aa) fasta scores: E(): 8.8e-33, 31.45% id in 744 aa, and to Bacteroides thetaiotaomicron alpha-1,2-mannosidase BT2199 SWALL:AAO77306 (EMBL:AE016935) (758 aa) fasta scores: E(): 0, 78.89% id in 744 aa, and to Bacteroides thetaiotaomicron putative alpha-1,2-mannosidase BT3990 SWALL:AAO79095 (EMBL:AE016943) (755 aa) fasta scores: E(): 2.4e-168, 50.53% id in 754 aa; putative alpha-1,2-mannosidase precursor 793805 3288620 BF9343_0625 Bacteroides fragilis NCTC 9343 putative alpha-1,2-mannosidase precursor YP_210362.1 791520 D 272559 CDS YP_210363.1 60680219 3288687 793846..796512 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2204 SWALL:AAO77311 (EMBL:AE016935) (857 aa) fasta scores: E(): 6.1e-105, 44.16% id in 874 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1770 SWALL:AAO76877 (EMBL:AE016933) (855 aa) fasta scores: E(): 1.9e-29, 23.39% id in 859 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3853 SWALL:AAO78958 (EMBL:AE016942) (857 aa) fasta scores: E(): 1.5e-14, 23.01% id in 895 aa; putative transmembrane protein 796512 3288687 BF9343_0626 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210363.1 793846 D 272559 CDS YP_210364.1 60680220 3288661 797339..800479 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 2.6e-51, 28.28% id in 1050 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 4.6e-117, 38.45% id in 1061 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4357 SWALL:AAO79462 (EMBL:AE016945) (1178 aa) fasta scores: E(): 9.8e-100, 37.39% id in 1075 aa; putative outer membrane protein 800479 3288661 BF9343_0627 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210364.1 797339 D 272559 CDS YP_210365.1 60680221 3288496 800493..802175 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0030 SWALL:AAO75137 (EMBL:AE016926) (609 aa) fasta scores: E(): 3.8e-47, 37.47% id in 619 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1620 SWALL:AAO76727 (EMBL:AE016932) (618 aa) fasta scores: E(): 2.3e-20, 31.84% id in 628 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0141 SWALL:AAO75248 (EMBL:AE016926) (579 aa) fasta scores: E(): 2.3e-19, 30.89% id in 602 aa; hypothetical protein 802175 3288496 BF9343_0628 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210365.1 800493 D 272559 CDS YP_210366.1 60680222 3288611 802185..803150 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron sialidase precursor, exo-alpha-sialidase BT2194 SWALL:AAO77301 (EMBL:AE016935) (316 aa) fasta scores: E(): 9.7e-41, 40.57% id in 313 aa, and to Bacteroides thetaiotaomicron putative chitobiase BT0865 SWALL:AAO75972 (EMBL:AE016929) (440 aa) fasta scores: E(): 6.1e-12, 29.66% id in 236 aa, and to Bacteroides thetaiotaomicron putative chitobiase BT4132 SWALL:AAO79237 (EMBL:AE016943) (392 aa) fasta scores: E(): 1.2e-11, 27.5% id in 280 aa; hypothetical protein 803150 3288611 BF9343_0629 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210366.1 802185 D 272559 CDS YP_210367.1 60680223 3288657 803179..804630 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2192 SWALL:AAO77299 (EMBL:AE016935) (484 aa) fasta scores: E(): 6.8e-175, 80.78% id in 484 aa, and to Clostridium perfringens hypothetical protein CPE1876 SWALL:Q8XJ85 (EMBL:AP003192) (750 aa) fasta scores: E(): 2e-72, 41.79% id in 457 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4713 SWALL:AAO79818 (EMBL:AE016946) (580 aa) fasta scores: E(): 3.1e-69, 44.05% id in 429 aa; hypothetical protein 804630 3288657 BF9343_0630 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210367.1 803179 D 272559 CDS YP_210368.1 60680224 3288627 805240..808302 1 NC_003228.3 Similar to Lactobacillus delbrueckii beta-galactosidase LacZ SWALL:BGAL_LACDE (SWALL:P20043) (1006 aa) fasta scores: E(): 2.7e-62, 33.33% id in 1065 aa, and to Escherichia coli beta-galactosidase LacZ or B0344 SWALL:BGAL_ECOLI (SWALL:P00722) (1023 aa) fasta scores: E(): 7.5e-62, 32.79% id in 1043 aa; putative beta-galactosidase 808302 3288627 BF9343_0631 Bacteroides fragilis NCTC 9343 putative beta-galactosidase YP_210368.1 805240 D 272559 CDS YP_210369.1 60680225 3289127 complement(808448..809680) 1 NC_003228.3 Similar to Haemophilus somnus 3-phosphoshikimate 1-carboxyvinyltransferase AroA SWALL:AROA_HAESO (SWALL:P52310) (432 aa) fasta scores: E(): 9.4e-36, 34.65% id in 430 aa, and to Bacteroides thetaiotaomicron 3-phosphoshikimate 1-carboxyvinyltransferase BT2186 SWALL:AAO77293 (EMBL:AE016935) (410 aa) fasta scores: E(): 1e-122, 77.03% id in 405 aa, and to Vibrio vulnificus 3-phosphoshikimate 1-carboxyvinyltransferase Vv12127 SWALL:Q8DAR4 (EMBL:AE016804) (376 aa) fasta scores: E(): 8.2e-37, 34.12% id in 378 aa; putative 3-phosphoshikimate 1-carboxyvinyltransferase 809680 aroA 3289127 aroA Bacteroides fragilis NCTC 9343 putative 3-phosphoshikimate 1-carboxyvinyltransferase YP_210369.1 808448 R 272559 CDS YP_210370.1 60680226 3288677 809965..810840 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron AraC-type transcription regulator BT1235 SWALL:Q8A8D2 (EMBL:AE016931) (300 aa) fasta scores: E(): 7.7e-28, 33.45% id in 284 aa, and to Porphyromonas gingivalis transcriptional regulator, AraC family PG2125 SWALL:AAQ67080 (EMBL:AE017179) (292 aa) fasta scores: E(): 4.3e-18, 27.85% id in 280 aa; putative AraC-family regulatory protein 810840 3288677 BF9343_0633 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_210370.1 809965 D 272559 CDS YP_210371.1 60680227 3288650 810853..812022 1 NC_003228.3 Similar to the C-terminal region of Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1264 SWALL:Q8A8A3 (EMBL:AE016931) (1039 aa) fasta scores: E(): 3.5e-59, 45.64% id in 379 aa, and of Rhodopirellula baltica sensory transduction histidine kinase RB8873 SWALL:Q7UME9 (EMBL:BX294148) (801 aa) fasta scores: E(): 1.2e-27, 31.67% id in 382 aa; putative histidine kinase 812022 3288650 BF9343_0634 Bacteroides fragilis NCTC 9343 putative histidine kinase YP_210371.1 810853 D 272559 CDS YP_210372.1 60680228 3288634 812300..814261 1 NC_003228.3 Similar to Streptomyces avermitilis beta-N-acetylhexosaminidase SWALL:Q93HN3 (EMBL:AB070936) (513 aa) fasta scores: E(): 1.2e-17, 27.38% id in 493 aa, and to Bacteroides thetaiotaomicron beta-N-hexosaminidase, glycosyl hyrolase family 20 BT3868 SWALL:AAO78973 (EMBL:AE016942) (661 aa) fasta scores: E(): 1.1e-191, 71.12% id in 651 aa, and to Clostridium perfringens hypothetical protein CPE1364 CPE1364 SWALL:Q8XKN0 (EMBL:AP003190) (1471 aa) fasta scores: E(): 1.2e-73, 36.99% id in 665 aa; putative glycosyl hydrolase, beta-N-acetylhexosaminidase 814261 3288634 BF9343_0635 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase, beta-N-acetylhexosaminidase YP_210372.1 812300 D 272559 CDS YP_210373.1 60680229 3288669 complement(814497..815585) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1850 SWALL:AAO76957 (EMBL:AE016933) (362 aa) fasta scores: E(): 3.3e-135, 86.18% id in 362 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2255 SWALL:AAO77362 (EMBL:AE016935) (386 aa) fasta scores: E(): 4.3e-22, 30.41% id in 388 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4450 SWALL:AAO79555 (EMBL:AE016945) (411 aa) fasta scores: E(): 6.3e-11, 29.88% id in 415 aa; putative transmembrane acyltransferase protein 815585 3288669 BF9343_0636 Bacteroides fragilis NCTC 9343 putative transmembrane acyltransferase protein YP_210373.1 814497 R 272559 CDS YP_210374.1 60680230 3288655 complement(816295..816690) 1 NC_003228.3 Similar to Anabaena sp. hypothetical protein Asr7520 SWALL:Q8ZSJ0 (EMBL:AP003602) (80 aa) fasta scores: E(): 0.0071, 40.35% id in 57 aa, however, CDS is extended at the C-terminus; hypothetical protein 816690 3288655 BF9343_0637 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210374.1 816295 R 272559 CDS YP_210375.1 60680231 3289125 complement(816703..817764) 1 NC_003228.3 Similar to Bacillus subtilis 3-dehydroquinate synthase AroB or BSU22700 SWALL:AROB_BACSU (SWALL:P31102) (362 aa) fasta scores: E(): 8.2e-27, 33.62% id in 342 aa, and to Bacteroides thetaiotaomicron 3-dehydroquinate synthase BT3975 SWALL:AAO79080 (EMBL:AE016943) (353 aa) fasta scores: E(): 5.9e-118, 85.26% id in 353 aa, and to Oceanobacillus iheyensis 3-dehydroquinate synthase AroB or ob1784 SWALL:Q8EQB7 (EMBL:AP004599) (359 aa) fasta scores: E(): 8.4e-34, 37.57% id in 354 aa; putative 3-dehydroquinate synthase 817764 aroB 3289125 aroB Bacteroides fragilis NCTC 9343 putative 3-dehydroquinate synthase YP_210375.1 816703 R 272559 CDS YP_210376.1 60680232 3288607 817901..818305 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3976 SWALL:AAO79081 (EMBL:AE016943) (134 aa) fasta scores: E(): 1.4e-38, 69.4% id in 134 aa; putative transmembrane protein 818305 3288607 BF9343_0639 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210376.1 817901 D 272559 CDS YP_210377.1 60680233 3288671 818378..821290 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3977 SWALL:AAO79082 (EMBL:AE016943) (937 aa) fasta scores: E(): 5.4e-80, 45.38% id in 985 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0289 SWALL:AAO75396 (EMBL:AE016927) (896 aa) fasta scores: E(): 1e-53, 39.74% id in 946 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4568 SWALL:AAO79673 (EMBL:AE016945) (811 aa) fasta scores: E(): 1.1e-11, 22.06% id in 852 aa; hypothetical protein 821290 3288671 BF9343_0640 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210377.1 818378 D 272559 CDS YP_210378.1 60680234 3287113 821453..822892 1 NC_003228.3 Similar to Bacillus firmus cardiolipin synthetase Cls SWALL:CLS_BACFI (SWALL:O66043) (503 aa) fasta scores: E(): 6e-68, 37.2% id in 473 aa, and to Bacteroides thetaiotaomicron putative cardiolipin synthetase BT3978 SWALL:AAO79083 (EMBL:AE016943) (479 aa) fasta scores: E(): 3.2e-177, 87.26% id in 479 aa, and to Bacteroides thetaiotaomicron putative cardiolipin synthetase BT2382 SWALL:AAO77489 (EMBL:AE016935) (474 aa) fasta scores: E(): 2.4e-76, 39.12% id in 478 aa; putative cardiolipin synthetase 822892 cls 3287113 cls Bacteroides fragilis NCTC 9343 putative cardiolipin synthetase YP_210378.1 821453 D 272559 CDS YP_210379.1 60680235 3288667 complement(822910..823443) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative methyltransferase BT3979 SWALL:AAO79084 (EMBL:AE016943) (177 aa) fasta scores: E(): 1.3e-62, 90.39% id in 177 aa, and to Fusobacterium nucleatum methyltransferase FN1329 SWALL:Q8R621 (EMBL:AE010638) (182 aa) fasta scores: E(): 8.1e-17, 38.65% id in 163 aa, and to Clostridium tetani methyltransferase CTC01232 SWALL:AAO35801 (EMBL:AE015940) (185 aa) fasta scores: E(): 3e-14, 34.75% id in 187 aa; putative methyltransferase 823443 3288667 BF9343_0642 Bacteroides fragilis NCTC 9343 putative methyltransferase YP_210379.1 822910 R 272559 CDS YP_210380.1 60680236 3288596 complement(823434..824228) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3980 SWALL:AAO79085 (EMBL:AE016943) (256 aa) fasta scores: E(): 1.9e-78, 75.68% id in 255 aa; hypothetical protein 824228 3288596 BF9343_0643 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210380.1 823434 R 272559 CDS YP_210381.1 60680237 3288642 complement(824236..824919) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3981 SWALL:AAO79086 (EMBL:AE016943) (228 aa) fasta scores: E(): 2.7e-62, 71.49% id in 228 aa; hypothetical protein 824919 3288642 BF9343_0644 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210381.1 824236 R 272559 CDS YP_210382.1 60680238 3288659 825016..826434 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ATP-dependent exoDNAse BT3982 SWALL:AAO79087 (EMBL:AE016943) (472 aa) fasta scores: E(): 2.3e-165, 86.41% id in 471 aa, and to Thermoanaerobacter tengcongensis ATP-dependent exoDNAse RecD or TTE0489 SWALL:Q8RCE3 (EMBL:AE013020) (765 aa) fasta scores: E(): 2.6e-06, 25% id in 376 aa, and to Methanococcus jannaschii hypothetical protein Mj1519 SWALL:Q58914 (EMBL:U67593) (1175 aa) fasta scores: E(): 3.7e-06, 22.93% id in 484 aa; putative ATP-dependent exodeoxyribonuclease 826434 3288659 BF9343_0645 Bacteroides fragilis NCTC 9343 putative ATP-dependent exodeoxyribonuclease YP_210382.1 825016 D 272559 CDS YP_210383.1 60680239 3288656 complement(826530..828263) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3984 SWALL:AAO79089 (EMBL:AE016943) (537 aa) fasta scores: E(): 1.1e-18, 27.08% id in 587 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2559 SWALL:AAO77666 (EMBL:AE016936) (547 aa) fasta scores: E(): 1e-17, 27.5% id in 589 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1039 SWALL:AAO76146 (EMBL:AE016930) (527 aa) fasta scores: E(): 6.4e-12, 28.93% id in 584 aa; conserved hypothetical lipoprotein 828263 3288656 BF9343_0646 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_210383.1 826530 R 272559 CDS YP_210384.1 60680240 3288648 complement(828286..831702) 1 NC_003228.3 Similar, but extended at the N-terminus, to previously sequenced Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 1.5e-46, 27.61% id in 1148 aa, and similar, but extended at the N-terminus, to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0317 SWALL:Q8AAZ5 (EMBL:AE016927) (1062 aa) fasta scores: E(): 2.7e-97, 34.66% id in 1079 aa, and similar, but extended at the N-terminus to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3983 SWALL:Q8A0N8 (EMBL:AE016943) (1135 aa) fasta scores: E(): 6.6e-72, 31.51% id in 1139 aa; putative outer membrane protein 831702 3288648 BF9343_0647 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210384.1 828286 R 272559 CDS YP_210385.1 60680241 3288658 complement(831948..834203) 1 NC_003228.3 Similar to Bacillus sp. M-90 alpha-1,2-mannosidase precursor Aman2 SWALL:Q9WXI8 (EMBL:AB025248) (1976 aa) fasta scores: E(): 4e-34, 31.99% id in 769 aa, and to Bacteroides thetaiotaomicron putative alpha-1,2-mannosidase BT3990 SWALL:AAO79095 (EMBL:AE016943) (755 aa) fasta scores: E(): 0, 85.84% id in 749 aa, and to Bacteroides thetaiotaomicron alpha-1,2-mannosidase BT3527 SWALL:AAO78633 (EMBL:AE016941) (763 aa) fasta scores: E(): 0, 73.93% id in 729 aa; putative alpha-1,2-mannosidase precursor 834203 3288658 BF9343_0648 Bacteroides fragilis NCTC 9343 putative alpha-1,2-mannosidase precursor YP_210385.1 831948 R 272559 CDS YP_210386.1 60680242 3288665 complement(834321..836588) 1 NC_003228.3 Similar to Bacillus sp. M-90 alpha-1,2-mannosidase precursor Aman2 SWALL:Q9WXI8 (EMBL:AB025248) (1976 aa) fasta scores: E(): 2.4e-25, 24.93% id in 762 aa, and to Bacteroides thetaiotaomicron putative alpha-1,2-mannosidase BT3991 SWALL:AAO79096 (EMBL:AE016943) (758 aa) fasta scores: E(): 0, 83.68% id in 754 aa, and to Xanthomonas campestris hypothetical protein XCC2894 SWALL:Q8P6S1 (EMBL:AE012403) (781 aa) fasta scores: E(): 6e-108, 41.28% id in 734 aa; putative alpha-1,2-mannosidase precursor 836588 3288665 BF9343_0649 Bacteroides fragilis NCTC 9343 putative alpha-1,2-mannosidase precursor YP_210386.1 834321 R 272559 CDS YP_210387.1 60680243 3288662 complement(836618..837616) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 3.6e-21, 28.48% id in 337 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT3992 SWALL:AAO79097 (EMBL:AE016943) (309 aa) fasta scores: E(): 1.6e-84, 69.8% id in 308 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT0965 SWALL:AAO76072 (EMBL:AE016929) (324 aa) fasta scores: E(): 3.8e-26, 31.61% id in 329 aa; putative anti-sigma factor 837616 3288662 BF9343_0650 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210387.1 836618 R 272559 CDS YP_210388.1 60680244 3288645 complement(837669..838223) 1 NC_003228.3 Similar to Bacteroides fragilis fragilis regulatory region sigma factor RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 5.5e-09, 30.46% id in 174 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3993 SWALL:AAO79098 (EMBL:AE016943) (184 aa) fasta scores: E(): 2.8e-60, 84.69% id in 183 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3277 SWALL:AAO78383 (EMBL:AE016939) (189 aa) fasta scores: E(): 5.8e-15, 33.52% id in 176 aa; putative RNA polymerase ECF-type sigma factor 838223 3288645 BF9343_0651 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210388.1 837669 R 272559 CDS YP_210389.1 60680245 3288653 complement(838262..840478) 1 NC_003228.3 Similar to Bacillus sp. M-90 alpha-1,2-mannosidase precursor Aman2 SWALL:Q9WXI8 (EMBL:AB025248) (1976 aa) fasta scores: E(): 8.5e-28, 27.05% id in 754 aa, and to Bacteroides thetaiotaomicron putative alpha-1,2-mannosidase BT3994 SWALL:AAO79099 (EMBL:AE016943) (743 aa) fasta scores: E(): 0, 83.67% id in 723 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3130 SWALL:AAO78236 (EMBL:AE016939) (735 aa) fasta scores: E(): 1.6e-122, 44.65% id in 748 aa; putative alpha-1,2-mannosidase precursor 840478 3288653 BF9343_0652 Bacteroides fragilis NCTC 9343 putative alpha-1,2-mannosidase precursor YP_210389.1 838262 R 272559 CDS YP_210390.1 60680246 3288616 complement(840978..842171) 1 NC_003228.3 Similar to Bacillus subtilis bicyclomycin resistance protein YdgK SWALL:P96709 (EMBL:AB001488) (402 aa) fasta scores: E(): 9.9e-42, 36.22% id in 392 aa, and to Oceanobacillus iheyensis bicyclomycin resistance protein ob0017 SWALL:Q8EU72 (EMBL:AP004593) (412 aa) fasta scores: E(): 1.2e-44, 37.73% id in 371 aa; putative efflux transporter bicyclomycin resistance protein 842171 3288616 BF9343_0653 Bacteroides fragilis NCTC 9343 putative efflux transporter bicyclomycin resistance protein YP_210390.1 840978 R 272559 CDS YP_210391.1 60680247 3288670 842321..843175 1 NC_003228.3 Similar to Pseudomonas sp PobR regulator SWALL:Q9X7I7 (EMBL:Y18527) (293 aa) fasta scores: E(): 8.6e-06, 28.02% id in 157 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT1968 SWALL:Q8A6B6 (EMBL:AE016934) (282 aa) fasta scores: E(): 3e-22, 29.69% id in 266 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3974 SWALL:Q8A0P7 (EMBL:AE016943) (264 aa) fasta scores: E(): 1.8e-16, 28.89% id in 263 aa; putative AraC-family transcriptional regulator 843175 3288670 BF9343_0654 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_210391.1 842321 D 272559 CDS YP_210392.1 60680248 3289112 complement(843422..846040) 1 NC_003228.3 Similar to Escherichia coli alanyl-tRNA synthetase AlaS or LovB or B2697 SWALL:SYA_ECOLI (SWALL:P00957) (876 aa) fasta scores: E(): 3.2e-124, 43.67% id in 886 aa, and to Bacteroides thetaiotaomicron alanyl-tRNA synthetase BT3995 SWALL:Q8A0M6 (EMBL:AE016943) (872 aa) fasta scores: E(): 0, 93.11% id in 872 aa, and to Porphyromonas gingivalis W83 alanyl-tRNA synthetase AlaS or PG1246 SWALL:AAQ66329 (EMBL:AE017176) (876 aa) fasta scores: E(): 0, 68.57% id in 872 aa; putative alanyl-tRNA synthetase 846040 alaS 3289112 alaS Bacteroides fragilis NCTC 9343 putative alanyl-tRNA synthetase YP_210392.1 843422 R 272559 CDS YP_210393.1 60680249 3288621 846144..847112 1 NC_003228.3 Similar to Shewanella violacea putative peptidase YebA SWALL:Q9F1M5 (EMBL:AB052554) (299 aa) fasta scores: E(): 3.7e-16, 47.24% id in 127 aa, and to Bacteroides thetaiotaomicron putative peptidase BT3996 SWALL:Q8A0M5 (EMBL:AE016943) (322 aa) fasta scores: E(): 1.2e-112, 90.99% id in 322 aa, and to Thermoanaerobacter tengcongensis membrane proteins related to metalloendopeptidases NlpD2 or TTE0841 SWALL:Q8RBH7 (EMBL:AE013050) (301 aa) fasta scores: E(): 8.6e-18, 30.29% id in 241 aa; putative transmembrane peptidase 847112 3288621 BF9343_0656 Bacteroides fragilis NCTC 9343 putative transmembrane peptidase YP_210393.1 846144 D 272559 CDS YP_210394.1 60680250 3288629 847127..847492 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT3997 SWALL:Q8A0M4 (EMBL:AE016943) (113 aa) fasta scores: E(): 2.1e-29, 72.32% id in 112 aa, and to Porphyromonas gingivalis W83 transcriptional regulator, putative PG1052 SWALL:AAQ66168 (EMBL:AE017175) (118 aa) fasta scores: E(): 1.3e-19, 54.2% id in 107 aa, and to Xylella fastidiosa transcription regulator protein PD1909 SWALL:Q87AB8 (EMBL:AE012560) (120 aa) fasta scores: E(): 7.5e-08, 41.23% id in 97 aa; putative transcriptional regulator protein 847492 3288629 BF9343_0657 Bacteroides fragilis NCTC 9343 putative transcriptional regulator protein YP_210394.1 847127 D 272559 CDS YP_210395.1 60680251 3288151 complement(847547..849790) 1 NC_003228.3 Similar to Bacillus subtilis GTP pyrophosphokinase RelA or BSU27600 SWALL:RELA_BACSU (SWALL:O54408) (734 aa) fasta scores: E(): 8.8e-87, 36.04% id in 763 aa, and to Bacteroides thetaiotaomicron GTP pyrophosphokinase BT3998 SWALL:Q8A0M3 (EMBL:AE016943) (747 aa) fasta scores: E(): 0, 91.42% id in 746 aa, and to Porphyromonas gingivalis W83 guanosine-3',5'-bis SpoT or PG1808 SWALL:AAQ66806 (EMBL:AE017178) (762 aa) fasta scores: E(): 4.8e-162, 55.31% id in 752 aa; putative RelA/SpoT GTP pyrophosphokinase 849790 3288151 BF9343_0658 Bacteroides fragilis NCTC 9343 putative RelA/SpoT GTP pyrophosphokinase YP_210395.1 847547 R 272559 CDS YP_210396.1 60680252 3288643 complement(849859..851178) 1 NC_003228.3 Similar to Photorhabdus luminescens membrane-bound lytic murein transglycosylase MltD SWALL:Q8GF74 (EMBL:AF346500) (454 aa) fasta scores: E(): 1.7e-21, 30.23% id in 377 aa, and to Bacteroides thetaiotaomicron membrane-bound lytic murein transglycosylase D presursor BT3999 SWALL:Q8A0M2 (EMBL:AE016943) (431 aa) fasta scores: E(): 5.6e-149, 81.94% id in 432 aa, and to Chlorobium tepidum membrane-bound lytic murein transglycosylase, putative CT0979 SWALL:Q8KDR6 (EMBL:AE012862) (536 aa) fasta scores: E(): 5.5e-59, 44.62% id in 363 aa; putative lytic murein transglycosylase 851178 3288643 BF9343_0659 Bacteroides fragilis NCTC 9343 putative lytic murein transglycosylase YP_210396.1 849859 R 272559 CDS YP_210397.1 60680253 3288635 complement(851182..852048) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4000 SWALL:Q8A0M1 (EMBL:AE016943) (295 aa) fasta scores: E(): 1.8e-72, 67.11% id in 298 aa; hypothetical protein 852048 3288635 BF9343_0660 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210397.1 851182 R 272559 CDS YP_210398.1 60680254 3289226 complement(852049..852939) 1 NC_003228.3 Similar to Bacillus subtilis stage 0 sporulation protein J Spo0J or BSU40960 SWALL:SP0J_BACSU (SWALL:P26497) (282 aa) fasta scores: E(): 9.2e-32, 40.49% id in 284 aa, and to Bacteroides thetaiotaomicron putative chromosome partitioning protein ParB BT4001 SWALL:Q8A0M0 (EMBL:AE016943) (296 aa) fasta scores: E(): 2.8e-93, 90.87% id in 296 aa, and to Porphyromonas gingivalis W83 SpoOJ protein or PG0141 SWALL:AAQ65382 (EMBL:AE017172) (289 aa) fasta scores: E(): 1e-54, 58.27% id in 290 aa; putative ParB-like chromosome partitioning protein 852939 parB 3289226 parB Bacteroides fragilis NCTC 9343 putative ParB-like chromosome partitioning protein YP_210398.1 852049 R 272559 CDS YP_210399.1 60680255 3289270 complement(852948..853715) 1 NC_003228.3 Similar to Bacillus subtilis sporulation initiation inhibitor protein SoJ or BSU40970 SWALL:SOJ_BACSU (SWALL:P37522) (253 aa) fasta scores: E(): 1.1e-47, 57.02% id in 249 aa, and to Bacteroides thetaiotaomicron ATPase, ParA family BT4002 SWALL:Q8A0L9 (EMBL:AE016943) (315 aa) fasta scores: E(): 3.7e-84, 96.44% id in 253 aa; putative ParA chromosome partitioning protein 853715 parA 3289270 parA Bacteroides fragilis NCTC 9343 putative ParA chromosome partitioning protein YP_210399.1 852948 R 272559 CDS YP_210400.1 60680256 3288570 853978..854202 1 NC_003228.3 no significant database matches; hypothetical protein 854202 3288570 BF9343_0663 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210400.1 853978 D 272559 CDS YP_210401.1 60680257 3287507 854220..854987 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis acid phosphatase SurE or TTE1338 SWALL:SURE_THETN (SWALL:Q8RA90) (255 aa) fasta scores: E(): 4.7e-28, 34.52% id in 252 aa, and to Bacteroides thetaiotaomicron stationary-phase survival protein SurE BT4003 SWALL:Q8A0L8 (EMBL:AE016943) (259 aa) fasta scores: E(): 4.2e-85, 78.26% id in 253 aa, and to Porphyromonas gingivalis W83 stationary-phase survival protein SurE or PG2163 SWALL:AAQ67113 (EMBL:AE017179) (256 aa) fasta scores: E(): 1.8e-34, 40% id in 245 aa; putative stationary-phase survival acid phosphatase 854987 surE 3287507 surE Bacteroides fragilis NCTC 9343 putative stationary-phase survival acid phosphatase YP_210401.1 854220 D 272559 CDS YP_210402.1 60680258 3288636 854984..856117 1 NC_003228.3 Similar to Pseudomonas aeruginosa lipid-A-disaccharide synthase LpxB or pa3643 SWALL:LPXB_PSEAE (SWALL:Q9HXY8) (378 aa) fasta scores: E(): 1.4e-29, 31.16% id in 385 aa, and to Bacteroides thetaiotaomicron lipid-A-disaccharide synthase BT4004 SWALL:Q8A0L7 (EMBL:AE016943) (378 aa) fasta scores: E(): 3e-118, 79.63% id in 378 aa, and to Porphyromonas gingivalis W83 lipid A disaccharide synthase LpxB or PG2162 SWALL:AAQ67112 (EMBL:AE017179) (383 aa) fasta scores: E(): 1.7e-59, 45.52% id in 380 aa; putative lipid-A-disaccharide synthase 856117 3288636 BF9343_0665 Bacteroides fragilis NCTC 9343 putative lipid-A-disaccharide synthase YP_210402.1 854984 D 272559 CDS YP_210403.1 60680259 3288613 856205..856948 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4005 SWALL:Q8A0L6 (EMBL:AE016943) (258 aa) fasta scores: E(): 1.1e-40, 50.19% id in 261 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4719 SWALL:Q89YL2 (EMBL:AE016946) (240 aa) fasta scores: E(): 5.5e-14, 30.7% id in 241 aa; hypothetical protein 856948 3288613 BF9343_0666 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210403.1 856205 D 272559 CDS YP_210404.1 60680260 3288604 complement(857063..857902) 1 NC_003228.3 Similar to Pseudomonas aeruginosa phosphatidate cytidylyltransferase CdsA or Cds or pa3651 SWALL:CDSA_PSEAE (SWALL:Q59640) (271 aa) fasta scores: E(): 3e-18, 34.04% id in 282 aa, and to Bacteroides thetaiotaomicron phosphatidate cytidylyltransferase BT4006 SWALL:Q8A0L5 (EMBL:AE016943) (280 aa) fasta scores: E(): 3.8e-92, 78.41% id in 278 aa, and to Porphyromonas gingivalis W83 phosphatidate cytidylyltransferase CdsA or PG0046 SWALL:AAQ65297 (EMBL:AE017172) (284 aa) fasta scores: E(): 1.8e-33, 38.84% id in 278 aa; putative phosphatidate cytidylyltransferase 857902 3288604 BF9343_0667 Bacteroides fragilis NCTC 9343 putative phosphatidate cytidylyltransferase YP_210404.1 857063 R 272559 CDS YP_210405.1 60680261 3288602 complement(857918..859912) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron BT4007 SWALL:Q8A0L4 (EMBL:AE016943) (696 aa) fasta scores: E(): 4.9e-195, 84.06% id in 665 aa, and to Porphyromonas gingivalis W83 cell division protein FtsH, putative PG0047 SWALL:AAQ65298 (EMBL:AE017172) (673 aa) fasta scores: E(): 2.4e-144, 63.47% id in 668 aa; putative transmembrane AAA-metalloprotease FtsH 859912 3288602 BF9343_0668 Bacteroides fragilis NCTC 9343 putative transmembrane AAA-metalloprotease FtsH YP_210405.1 857918 R 272559 CDS YP_210406.1 60680262 3288664 complement(859961..860320) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4008 SWALL:Q8A0L3 (EMBL:AE016943) (119 aa) fasta scores: E(): 8.5e-40, 84.87% id in 119 aa, and to Synechocystis sp. Iojap protein SLR1886 SWALL:P73658 (EMBL:D90908) (154 aa) fasta scores: E(): 3.4e-12, 40% id in 115 aa; hypothetical protein 860320 3288664 BF9343_0669 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210406.1 859961 R 272559 CDS YP_210407.1 60680263 3288595 complement(860985..862835) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4041 SWALL:Q8A0I0 (EMBL:AE016943) (624 aa) fasta scores: E(): 5e-170, 83.78% id in 623 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1189 SWALL:AAQ66285 (EMBL:AE017176) (626 aa) fasta scores: E(): 1.2e-78, 43.28% id in 603 aa; hypothetical protein 862835 3288595 BF9343_0670 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210407.1 860985 R 272559 CDS YP_210408.1 60680264 3288600 complement(862954..864294) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative Mg2+ transporter MgtE BT4042 SWALL:Q8A0H9 (EMBL:AE016943) (446 aa) fasta scores: E(): 6.9e-148, 94.84% id in 446 aa, and to Porphyromonas gingivalis W83 magnesium transporter MgtE or PG0134 SWALL:AAQ65375 (EMBL:AE017172) (450 aa) fasta scores: E(): 2.1e-102, 65.39% id in 445 aa; putative transmembrane Mg2+ transporter 864294 3288600 BF9343_0671 Bacteroides fragilis NCTC 9343 putative transmembrane Mg2+ transporter YP_210408.1 862954 R 272559 CDS YP_210409.1 60680265 3289179 complement(864395..865213) 1 NC_003228.3 Similar to Mycoplasma capricolum dimethyladenosine transferase KsgA SWALL:KSGA_MYCCA (SWALL:P43038) (266 aa) fasta scores: E(): 3.1e-26, 36.78% id in 261 aa, and to Bacteroides thetaiotaomicron dimethyladenosine transferase KsgA or BT4043 SWALL:KSGA_BACTN (SWALL:Q8A0H8) (267 aa) fasta scores: E(): 4.3e-96, 93.07% id in 260 aa; putative dimethyladenosine transferase 865213 ksgA 3289179 ksgA Bacteroides fragilis NCTC 9343 putative dimethyladenosine transferase YP_210409.1 864395 R 272559 CDS YP_210410.1 60680266 3288581 865284..866264 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative dolichol-p-glucose synthetase BT4044 SWALL:AAO79149 (EMBL:AE016943) (328 aa) fasta scores: E(): 3e-111, 82.2% id in 326 aa; putative transmembrane protein 866264 3288581 BF9343_0673 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210410.1 865284 D 272559 CDS YP_210411.1 60680267 3288535 866431..867888 1 NC_003228.3 Similar to Escherichia coli aminoacyl-histidine dipeptidase PepD or PepH or B0237 SWALL:PEPD_ECOLI (SWALL:P15288) (484 aa) fasta scores: E(): 1.6e-85, 45.45% id in 484 aa, and to Bacteroides thetaiotaomicron aminoacyl-histidine dipeptidase BT4045 SWALL:AAO79150 (EMBL:AE016943) (485 aa) fasta scores: E(): 9.7e-178, 91.13% id in 485 aa, and to Chlorobium tepidum aminoacyl-histidine dipeptidase PepD or CT1058 SWALL:Q8KDJ2 (EMBL:AE012869) (486 aa) fasta scores: E(): 1.8e-93, 50.82% id in 488 aa; putative aminoacyl-histidine dipeptidase 867888 3288535 BF9343_0674 Bacteroides fragilis NCTC 9343 putative aminoacyl-histidine dipeptidase YP_210411.1 866431 D 272559 CDS YP_210412.1 60680268 3288574 complement(868542..870224) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1247 SWALL:AAO76354 (EMBL:AE016931) (863 aa) fasta scores: E(): 1.6e-06, 33.33% id in 168 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3424 SWALL:AAO78530 (EMBL:AE016940) (912 aa) fasta scores: E(): 2.2e-06, 23.15% id in 285 aa; hypothetical protein 870224 3288574 BF9343_0675 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210412.1 868542 R 272559 CDS YP_210413.1 60680269 3288588 complement(870246..871397) 1 NC_003228.3 no significant database matches; hypothetical protein 871397 3288588 BF9343_0676 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210413.1 870246 R 272559 CDS YP_210414.1 60680270 3288576 complement(871402..874152) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2172 SWALL:Q8A5R6 (EMBL:AE016935) (897 aa) fasta scores: E(): 2.4e-65, 30.64% id in 842 aa, and to Bacteroides thetaiotaomicron putative ferric aerobactin receptor BT0150 SWALL:Q8ABG0 (EMBL:AE016926) (792 aa) fasta scores: E(): 2.4e-09, 23.93% id in 777 aa; putative TonB-dependent outer membrane receptor protein 874152 3288576 BF9343_0677 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_210414.1 871402 R 272559 CDS YP_210415.1 60680271 3288582 complement(874149..874889) 1 NC_003228.3 no significant database matches; hypothetical protein 874889 3288582 BF9343_0678 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210415.1 874149 R 272559 CDS YP_210416.1 60680272 3288592 875112..880892 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4047 SWALL:Q8A0H4 (EMBL:AE016943) (1915 aa) fasta scores: E(): 0, 55.05% id in 1949 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2204 SWALL:AAQ67145 (EMBL:AE017179) (1908 aa) fasta scores: E(): 1e-134, 29.23% id in 1984 aa; hypothetical protein 880892 3288592 BF9343_0679 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210416.1 875112 D 272559 CDS YP_210417.1 60680273 3288590 881071..881421 1 NC_003228.3 no significant database matches; hypothetical protein 881421 3288590 BF9343_0680 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210417.1 881071 D 272559 CDS YP_210418.1 60680274 3288560 881441..882565 1 NC_003228.3 no significant database matches; hypothetical protein 882565 3288560 BF9343_0681 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210418.1 881441 D 272559 CDS YP_210419.1 60680275 3288561 882573..883103 1 NC_003228.3 Limited similarity to Bacillus cereus thiol-disulfide oxidoreductase ResA or BC1473 SWALL:RESA_BACCR (SWALL:Q81FU5) (173 aa) fasta scores: E(): 0.78, 23.39% id in 171 aa, and to Yersinia pestis similarity ResA_Bacsu ResA protein from Bacillus subtilis YPO1947 SWALL:Q9ZC57 (EMBL:AL031866) (165 aa) fasta scores: E(): 0.11, 23.22% id in 155 aa; possible oxidoreductase 883103 3288561 BF9343_0682 Bacteroides fragilis NCTC 9343 possible oxidoreductase YP_210419.1 882573 D 272559 CDS YP_210420.1 60680276 3288544 883198..884325 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4048 SWALL:Q8A0H3 (EMBL:AE016943) (373 aa) fasta scores: E(): 6e-97, 72.06% id in 358 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0320 SWALL:AAQ65534 (EMBL:AE017173) (362 aa) fasta scores: E(): 1e-20, 29.08% id in 361 aa; hypothetical protein 884325 3288544 BF9343_0683 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210420.1 883198 D 272559 CDS YP_210421.1 60680277 3288577 884334..885425 1 NC_003228.3 Similar to Escherichia coli Lao/Ao transport system kinase ArgK or B2918 SWALL:ARGK_ECOLI (SWALL:P27254) (331 aa) fasta scores: E(): 7.2e-46, 42.08% id in 316 aa, and to Bacteroides thetaiotaomicron putative ArgK protein with ATPase and kinase domains BT4049 SWALL:Q8A0H2 (EMBL:AE016943) (364 aa) fasta scores: E(): 2.9e-124, 92.56% id in 363 aa, and to Porphyromonas gingivalis W83 Lao/Ao transport system ATPase PG0321 SWALL:AAQ65535 (EMBL:AE017173) (343 aa) fasta scores: E(): 4.2e-89, 70.44% id in 335 aa; putative Lao/Ao arginine transport system kinase 885425 3288577 BF9343_0684 Bacteroides fragilis NCTC 9343 putative Lao/Ao arginine transport system kinase YP_210421.1 884334 D 272559 CDS YP_210422.1 60680278 3288572 complement(885457..886365) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4051 SWALL:AAO79156 (EMBL:AE016943) (305 aa) fasta scores: E(): 3.3e-96, 83.94% id in 299 aa, and to Bacteroides thetaiotaomicron putative permease BT2567 SWALL:AAO77674 (EMBL:AE016936) (306 aa) fasta scores: E(): 3.3e-21, 30.18% id in 265 aa; putative transmembrane permease 886365 3288572 BF9343_0685 Bacteroides fragilis NCTC 9343 putative transmembrane permease YP_210422.1 885457 R 272559 CDS YP_210423.1 60680279 3288565 888296..889543 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative membrane transport protein BT4053 SWALL:Q8A0G8 (EMBL:AE016943) (443 aa) fasta scores: E(): 3.4e-125, 76.21% id in 412 aa, and to Shewanella oneidensis conserved hypothetical protein so0121 SWALL:Q8EKH2 (EMBL:AE015463) (392 aa) fasta scores: E(): 1.4e-66, 46.13% id in 388 aa, and to Vibrio cholerae hypothetical protein Vc0265 SWALL:Q9KV91 (EMBL:AE004115) (412 aa) fasta scores: E(): 2.7e-66, 45.69% id in 383 aa.; putative transmembrane transport protein 889543 3288565 BF9343_0687 Bacteroides fragilis NCTC 9343 putative transmembrane transport protein YP_210423.1 888296 D 272559 CDS YP_210424.1 60680280 3288599 889585..890478 1 NC_003228.3 Similar to Pseudomonas fluorescens activator protein MtlR SWALL:O52770 (EMBL:AF047527) (301 aa) fasta scores: E(): 1.8e-18, 28.31% id in 279 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT4054 SWALL:Q8A0G7 (EMBL:AE016943) (298 aa) fasta scores: E(): 2.3e-106, 91.27% id in 298 aa; putative AraC-family regulatory protein 890478 3288599 BF9343_0688 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_210424.1 889585 D 272559 CDS YP_210425.1 60680281 3288559 complement(891484..891813) 1 NC_003228.3 possible HipA-like protein 891813 3288559 BF9343_0690 Bacteroides fragilis NCTC 9343 possible HipA-like protein YP_210425.1 891484 R 272559 CDS YP_210426.1 60680282 3288569 complement(891810..892079) 1 NC_003228.3 Similar to Corynebacterium glutamicum predicted transcriptional regulator CGL1235 SWALL:Q8NR29 (EMBL:AP005277) (75 aa) fasta scores: E(): 0.00024, 40.9% id in 66 aa, and to Lactobacillus plantarum transcription regulator LP_2654 SWALL:Q88U69 (EMBL:AL935259) (106 aa) fasta scores: E(): 0.0018, 40.98% id in 61 aa. Possible alternative start site at codon 20; putative DNA-binding protein 892079 3288569 BF9343_0691 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_210426.1 891810 R 272559 CDS YP_210427.1 60680283 3288530 complement(892512..893384) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical protein SWALL:Q8VST0 (EMBL:AF366394) (277 aa) fasta scores: E(): 7.2e-39, 78.96% id in 290 aa, and to previously sequenced Bacteroides fragilis hypothetical protein SWALL:Q8VU11 (EMBL:AF285774) (267 aa) fasta scores: E(): 3.2e-34, 62.75% id in 290 aa; hypothetical protein 893384 3288530 BF9343_0692 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210427.1 892512 R 272559 CDS YP_210428.1 60680284 3288536 complement(893527..893874) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical 13.9 kDa protein SWALL:Q8VU10 (EMBL:AF285774) (115 aa) fasta scores: E(): 3e-29, 60.87% id in 115 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0593 SWALL:AAO75700 (EMBL:AE016928) (121 aa) fasta scores: E(): 6.6e-22, 54.08% id in 98 aa; hypothetical protein 893874 3288536 BF9343_0693 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210428.1 893527 R 272559 CDS YP_210429.1 60680285 3288753 complement(893974..894204) 1 NC_003228.3 no significant database matches; hypothetical protein 894204 3288753 BF9343_0694 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210429.1 893974 R 272559 CDS YP_210430.1 60680286 3288487 complement(894266..894388) 1 NC_003228.3 no significant database matches; hypothetical protein 894388 3288487 BF9343_0695 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210430.1 894266 R 272559 CDS YP_210431.1 60680287 3285476 894922..895458 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative transcriptional regulator UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 3.4e-09, 30.67% id in 163 aa, and to previously sequenced Bacteroides fragilis putative transcriptional regulator UpdY SWALL:Q8VSS9 (EMBL:AF366394) (179 aa) fasta scores: E(): 3.5e-27, 45.93% id in 172 aa, and to previously sequenced Bacteroides fragilis putative transcriptional regulatory protein UpbY SWALL:Q9F769 (EMBL:AF285774) (174 aa) fasta scores: E(): 2.5e-09, 31.73% id in 167 aa; putative transcriptional regulator 895458 upgY 3285476 upgY Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_210431.1 894922 D 272559 CDS YP_210432.1 60680288 3285382 895478..895966 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical 18.5 kDa protein UpbZ SWALL:Q9F768 (EMBL:AF285774) (161 aa) fasta scores: E(): 3.9e-28, 48.44% id in 161 aa, and to previously sequenced Bacteroides fragilis putative transcriptional regulator UpaZ SWALL:Q93QW5 (EMBL:AF189282) (157 aa) fasta scores: E(): 6e-28, 50.95% id in 157 aa, and to previously sequenced Bacteroides fragilis putative transcriptional regulator UpdZ SWALL:Q8VSS8 (EMBL:AF366394) (160 aa) fasta scores: E(): 1.1e-27, 49.35% id in 156 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1357 SWALL:AAO76464 (EMBL:AE016931) (122 aa) fasta scores: E(): 4.1e-09, 36.03% id in 111 aa; putative transcriptional regulator 895966 upgZ 3285382 upgZ Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_210432.1 895478 D 272559 CDS YP_210433.1 60680289 3288651 895989..897197 1 NC_003228.3 Similar to Streptococcus suis capsular polysaccharide protein Cps9E SWALL:Q9RG42 (EMBL:AF155805) (608 aa) fasta scores: E(): 4.7e-17, 28.84% id in 312 aa, and to Vibrio parahaemolyticus putative capsular polysaccharide biosynthesis protein D vp0197 SWALL:BAC58460 (EMBL:AP005073) (396 aa) fasta scores: E(): 3.2e-62, 44.89% id in 392 aa, and to Vibrio vulnificus predicted nucleoside-diphosphate sugar epimerases VV10811 SWALL:Q8DDZ4 (EMBL:AE016799) (396 aa) fasta scores: E(): 5.7e-62, 45.15% id in 392 aa; putative capsular polysaccharide biosynthesis protein 897197 3288651 BF9343_0698 Bacteroides fragilis NCTC 9343 putative capsular polysaccharide biosynthesis protein YP_210433.1 895989 D 272559 CDS YP_210434.1 60680290 3288716 897217..898350 1 NC_003228.3 Similar to Plesiomonas shigelloides O-antigen related WbgX SWALL:Q9F743 (EMBL:AF285970) (384 aa) fasta scores: E(): 1.3e-42, 35.95% id in 381 aa, and to Methanococcus jannaschii hypothetical protein MJ1066 SWALL:YA66_METJA (SWALL:Q58466) (386 aa) fasta scores: E(): 5.2e-48, 41.01% id in 373 aa, and to Plesiomonas shigelloides ORF7P SWALL:Q9S0X9 (EMBL:AB025970) (384 aa) fasta scores: E(): 1.3e-42, 35.95% id in 381 aa; putative DegT/DnrJ/EryC1/StrS aminotransferase family O-antigen related protein 898350 3288716 BF9343_0699 Bacteroides fragilis NCTC 9343 putative DegT/DnrJ/EryC1/StrS aminotransferase family O-antigen related protein YP_210434.1 897217 D 272559 CDS YP_210435.1 60680291 3288663 898343..898951 1 NC_003228.3 Similar to Escherichia coli capsular polysaccharide NeuD protein SWALL:Q46674 (EMBL:U05248) (207 aa) fasta scores: E(): 3.6e-11, 28.29% id in 205 aa, and to Caulobacter crescentus putative acetyltransferase LpsB or CC1011 SWALL:O85353 (EMBL:AF062345) (215 aa) fasta scores: E(): 1.4e-13, 30% id in 200 aa, and to Bacteroides thetaiotaomicron putative hexapeptide transferase family protein BT2943 SWALL:AAO78049 (EMBL:AE016938) (552 aa) fasta scores: E(): 3.6e-13, 33.83% id in 198 aa; putative capsular polysaccharide related hexapeptide transferase family protein 898951 3288663 BF9343_0700 Bacteroides fragilis NCTC 9343 putative capsular polysaccharide related hexapeptide transferase family protein YP_210435.1 898343 D 272559 CDS YP_210436.1 60680292 3288579 899012..900067 1 NC_003228.3 Similar to Leptospira interrogans mannose-1-phosphate guanyltransferase La1611 SWALL:Q8F5Q6 (EMBL:AE011339) (351 aa) fasta scores: E(): 1.5e-30, 31.44% id in 353 aa, and to Pseudomonas aeruginosa similar to nucleotidyl transferase SWALL:Q8KNA1 (EMBL:AF498403) (348 aa) fasta scores: E(): 5.7e-27, 27.87% id in 348 aa, and to Campylobacter jejuni putative sugar-phosphate nucleotide transferase cj1329 SWALL:Q9PMX0 (EMBL:AL139078) (341 aa) fasta scores: E(): 8.5e-27, 30.14% id in 345 aa; putative sugar-phosphate nucleotidyl transferase 900067 3288579 BF9343_0701 Bacteroides fragilis NCTC 9343 putative sugar-phosphate nucleotidyl transferase YP_210436.1 899012 D 272559 CDS YP_210437.1 60680293 3288699 900135..901586 1 NC_003228.3 Similar to Shigella boydii O-antigen flippase Wzx SWALL:Q93CS0 (EMBL:AF402314) (470 aa) fasta scores: E(): 2.3e-30, 26.53% id in 471 aa, and to Bacillus subtilis TuaB protein SWALL:O32273 (EMBL:Z99122) (483 aa) fasta scores: E(): 3.8e-33, 26.66% id in 465 aa, and to Escherichia coli O157:H7 probable export protein WzxC or z3210 or ECS2851 SWALL:Q8X7P3 (EMBL:AE005430) (492 aa) fasta scores: E(): 3.1e-30, 23.31% id in 459 aa; putative polysaccharide transporter/flippase 901586 3288699 BF9343_0702 Bacteroides fragilis NCTC 9343 putative polysaccharide transporter/flippase YP_210437.1 900135 D 272559 CDS YP_210438.1 60680294 3288541 901583..902746 1 NC_003228.3 Limited similarity to Thermoanaerobacter tengcongensis predicted glycosyltransferases Rfag2 or TTE0275 SWALL:Q8RCY0 (EMBL:AE013000) (404 aa) fasta scores: E(): 0.0047, 21.21% id in 297 aa; possible glycosyltransferase protein 902746 3288541 BF9343_0703 Bacteroides fragilis NCTC 9343 possible glycosyltransferase protein YP_210438.1 901583 D 272559 CDS YP_210439.1 60680295 3288637 902779..903879 1 NC_003228.3 Limited similarity to Salmonella enterica O-antigen polymerase WbaA SWALL:Q01418 (EMBL:M84642) (359 aa) fasta scores: E(): 0.00023, 23.58% id in 352 aa, and to Leishmania tarentolae Murf1 protein murf1 SWALL:Q33559 (EMBL:M10126) (443 aa) fasta scores: E(): 0.00032, 23.24% id in 327 aa, and to Phytomonas serpens Murf1 SWALL:Q9XKY5 (EMBL:AF079967) (441 aa) fasta scores: E(): 0.0012, 22.97% id in 383 aa, and to Lactobacillus plantarum polysaccharide polymerase Cps2H or LP_1204 SWALL:CAD63717 (EMBL:AL935255) (379 aa) fasta scores: E(): 0.0019, 22.5% id in 320 aa; possible O-antigen related transmembrane protein 903879 3288637 BF9343_0704 Bacteroides fragilis NCTC 9343 possible O-antigen related transmembrane protein YP_210439.1 902779 D 272559 CDS YP_210440.1 60680296 3288630 903891..905006 1 NC_003228.3 Limited similarity to Staphylococcus aureus Cap5I SWALL:P95702 (EMBL:U81973) (369 aa) fasta scores: E(): 0.00025, 24.12% id in 373 aa, and to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap5I or sav0157 or sa0152 SWALL:Q99X62 (EMBL:AP003358) (369 aa) fasta scores: E(): 0.00061, 23.38% id in 372 aa, and to Aquifex aeolicus mannosyltransferase c mtfc or AQ_516 SWALL:O66802 (EMBL:AE000693) (368 aa) fasta scores: E(): 0.21, 22.64% id in 340 aa, and to Clostridium acetobutylicum diverged glycosyltransferase domain containing protein CAC2326 SWALL:Q97GP0 (EMBL:AE007733) (436 aa) fasta scores: E(): 1.4, 26.81% id in 138 aa; possible glycosyltransferase 905006 3288630 BF9343_0705 Bacteroides fragilis NCTC 9343 possible glycosyltransferase YP_210440.1 903891 D 272559 CDS YP_210441.1 60680297 3288622 905016..906035 1 NC_003228.3 no significant database matches; hypothetical protein 906035 3288622 BF9343_0706 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210441.1 905016 D 272559 CDS YP_210442.1 60680298 3288688 906032..907129 1 NC_003228.3 Limited similarity to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap8H SWALL:P72374 (EMBL:U73374) (359 aa) fasta scores: E(): 0.00027, 22.51% id in 262 aa, and to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap8H or mw0131 SWALL:Q8NYP6 (EMBL:AP004822) (359 aa) fasta scores: E(): 0.00015, 23.01% id in 265 aa, and to Streptococcus pneumoniae capsular polysaccharide biosynthesis WciK or sp0352 SWALL:Q9AHC9 (EMBL:AF316639) (358 aa) fasta scores: E(): 0.00072, 26.73% id in 318 aa; possible capsular polysaccharide related protein 907129 3288688 BF9343_0707 Bacteroides fragilis NCTC 9343 possible capsular polysaccharide related protein YP_210442.1 906032 D 272559 CDS YP_210443.1 60680299 3288696 907147..908355 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis UDP-ManNAc dehydrogenase MnaB SWALL:Q9RGJ9 (EMBL:AF125164) (408 aa) fasta scores: E(): 2.2e-136, 88.27% id in 401 aa, and to Bacteroides thetaiotaomicron UDP-N-acetyl-D-mannosamine dehydrogenase BT2945 SWALL:AAO78051 (EMBL:AE016938) (400 aa) fasta scores: E(): 1.8e-103, 66.08% id in 401 aa, and to Acinetobacter lwoffii putative NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase WeeB SWALL:Q9RMD5 (EMBL:AJ243431) (417 aa) fasta scores: E(): 3.7e-74, 52.67% id in 412 aa; putative UDP-ManNAc dehydrogenase 908355 3288696 BF9343_0708 Bacteroides fragilis NCTC 9343 putative UDP-ManNAc dehydrogenase YP_210443.1 907147 D 272559 CDS YP_210444.1 60680300 3288617 908366..909526 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis UDP-GlcNAc 2-epimerase MnaA SWALL:Q9RGJ8 (EMBL:AF125164) (384 aa) fasta scores: E(): 9.3e-120, 79.63% id in 383 aa, and to Bacteroides thetaiotaomicron UDP-N-acetylglucosamine 2-epimerase BT0601 SWALL:AAO75708 (EMBL:AE016928) (403 aa) fasta scores: E(): 2.7e-108, 76.1% id in 385 aa, and to Bacteroides thetaiotaomicron putative UDP-N-acetylglucosamine 2-epimerase BT2944 SWALL:AAO78050 (EMBL:AE016938) (376 aa) fasta scores: E(): 3.3e-89, 62.3% id in 382 aa; putative UDP-GlcNAc 2-epimerase 909526 3288617 BF9343_0709 Bacteroides fragilis NCTC 9343 putative UDP-GlcNAc 2-epimerase YP_210444.1 908366 D 272559 CDS YP_210445.1 60680301 3288490 complement(910129..911037) 1 NC_003228.3 Similar to Lactococcus lactis transposase SWALL:Q48369 (EMBL:L34754) (296 aa) fasta scores: E(): 8e-05, 25.6% id in 250 aa, and to Lactococcus lactis putative IS-like element protein SWALL:Q53510 (EMBL:S77101) (296 aa) fasta scores: E(): 1.6e-06, 26.8% id in 250 aa, and to Lactococcus lactis, and Lactococcus lactis subsp. lactis bv. diacetylactis putative transposase SWALL:O87349 (EMBL:AF051563) (296 aa) fasta scores: E(): 2.9e-06, 26.4% id in 250 aa; putative transposase_11 DDE family protein 911037 3288490 BF9343_0711 Bacteroides fragilis NCTC 9343 putative transposase_11 DDE family protein YP_210445.1 910129 R 272559 CDS YP_210446.1 60680302 3288673 911320..913194 1 NC_003228.3 Similar to Acinetobacter lwoffii emulsan biosynthesis WeeF protein SWALL:Q9RMC9 (EMBL:AJ243431) (604 aa) fasta scores: E(): 5.6e-43, 28.88% id in 630 aa, and to Pseudomonas aeruginosa ORF_12 of O-antigen biosynthetic locus SWALL:Q8KN79 (EMBL:AF498414) (614 aa) fasta scores: E(): 1e-42, 31.34% id in 469 aa, and to Ralstonia solanacearum hypothetical protein RSP1010 or RS02344 SWALL:Q8XR51 (EMBL:AL646082) (612 aa) fasta scores: E(): 6.1e-36, 28.54% id in 466 aa; hypothetical protein 913194 3288673 BF9343_0712 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210446.1 911320 D 272559 CDS YP_210447.1 60680303 3288514 913196..914413 1 NC_003228.3 Similar to Nostoc punctiforme lipopolysaccharide biosynthesis protein SWALL:Q93LM6 (EMBL:AY037293) (440 aa) fasta scores: E(): 3.3e-20, 26.11% id in 402 aa, and to Acinetobacter lwoffii putative glycosyltransferase WeeG SWALL:Q9RMC8 (EMBL:AJ243431) (403 aa) fasta scores: E(): 1e-85, 54.66% id in 397 aa, and to Pseudomonas aeruginosa similar to glycosyl transferases group 1 SWALL:Q8KH36 (EMBL:AF498407) (405 aa) fasta scores: E(): 1.6e-81, 54.2% id in 404 aa; putative glycosyltransferase protein 914413 3288514 BF9343_0713 Bacteroides fragilis NCTC 9343 putative glycosyltransferase protein YP_210447.1 913196 D 272559 CDS YP_210448.1 60680304 3288436 914432..915040 1 NC_003228.3 Similar to Campylobacter jejuni UDP-galactose phosphate transferase homolog SWALL:Q9S5Y5 (EMBL:AF001498) (200 aa) fasta scores: E(): 4.6e-46, 60.89% id in 202 aa, and to Bacteroides fragilis putative undecaprenyl-phosphate glycosyl-1-phosphate transferase WcgN SWALL:Q9RGI8 (EMBL:AF125164) (202 aa) fasta scores: E(): 1.7e-70, 82.67% id in 202 aa, and to Oceanobacillus iheyensis UDP-galactose phosphate transferase ob2892 SWALL:Q8EMF5 (EMBL:AP004602) (215 aa) fasta scores: E(): 3.5e-47, 57.71% id in 201 aa; putative UDP-galactose phosphate transferase 915040 3288436 BF9343_0714 Bacteroides fragilis NCTC 9343 putative UDP-galactose phosphate transferase YP_210448.1 914432 D 272559 CDS YP_210449.1 60680305 3288434 915045..915629 1 NC_003228.3 Similar to Legionella pneumophila putative acetyl transferase SWALL:Q9RDX7 (EMBL:AJ007311) (419 aa) fasta scores: E(): 4.5e-16, 39.17% id in 194 aa, and to previously sequenced Bacteroides fragilis putative acetyltransferase WcgO SWALL:Q9RGI7 (EMBL:AF125164) (194 aa) fasta scores: E(): 4.7e-70, 96.9% id in 194 aa, and to Bacillus subtilis hypothetical protein YvfD SWALL:P71063 (EMBL:Z71928) (216 aa) fasta scores: E(): 7.7e-24, 43.41% id in 205 aa; putative acetyltransferase 915629 3288434 BF9343_0715 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_210449.1 915045 D 272559 CDS YP_210450.1 60680306 3288477 complement(915822..916433) 1 NC_003228.3 Similar to Haemophilus aegyptius hypothetical protein bpl02 SWALL:Q8VRE7 (EMBL:AF447808) (311 aa) fasta scores: E(): 1.2e-08, 30% id in 200 aa, and to Xylella fastidiosa cell filamentation protein xf1657 SWALL:Q9PCU8 (EMBL:AE003992) (203 aa) fasta scores: E(): 7.5e-08, 29.16% id in 192 aa, and to Shewanella oneidensis cell filamentation protein fic fic or so0913 SWALL:Q8EID0 (EMBL:AE015536) (197 aa) fasta scores: E(): 1.3e-07, 30.43% id in 161 aa; putative FIC family protein 916433 3288477 BF9343_0716 Bacteroides fragilis NCTC 9343 putative FIC family protein YP_210450.1 915822 R 272559 CDS YP_210451.1 60680307 3288513 916521..917654 1 NC_003228.3 Similar to Campylobacter jejuni lipopolysaccharide biosynthesis WlaK protein SWALL:O86158 (EMBL:Y11648) (386 aa) fasta scores: E(): 2.3e-44, 43.76% id in 393 aa, and to Bacteroides fragilis putative aminotransferase WcgP SWALL:Q9RGI6 (EMBL:AF125164) (376 aa) fasta scores: E(): 6e-143, 93.06% id in 375 aa, and to Oceanobacillus iheyensis aminotransferase ob2893 SWALL:Q8EMF4 (EMBL:AP004602) (371 aa) fasta scores: E(): 8.4e-69, 49.73% id in 380 aa; putative DegT/DnrJ/EryC1/StrS family aminotransferase protein 917654 3288513 BF9343_0717 Bacteroides fragilis NCTC 9343 putative DegT/DnrJ/EryC1/StrS family aminotransferase protein YP_210451.1 916521 D 272559 CDS YP_210452.1 60680308 3288363 917686..917856 1 NC_003228.3 no significant database matches; hypothetical protein 917856 3288363 BF9343_0718 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210452.1 917686 D 272559 CDS YP_210453.1 60680309 3288505 918036..918515 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical 17.0 kDa protein ORF8 SWALL:Q9F747 (EMBL:AF285774) (157 aa) fasta scores: E(): 1.6e-43, 74.84% id in 159 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative non-specific DNA-binding protein BT2021 SWALL:AAO77128 (EMBL:AE016934) (175 aa) fasta scores: E(): 5.4e-26, 50.57% id in 174 aa, and to Bacteroides thetaiotaomicron putative non-specific DNA-binding protein BT3199 SWALL:AAO78305 (EMBL:AE016939) (168 aa) fasta scores: E(): 3e-13, 36.68% id in 169 aa; putative non-specific DNA binding protein 918515 3288505 BF9343_0719 Bacteroides fragilis NCTC 9343 putative non-specific DNA binding protein YP_210453.1 918036 D 272559 CDS YP_210454.1 60680310 3288495 918537..918629 1 NC_003228.3 no significant database matches; hypothetical protein 918629 3288495 BF9343_0720 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210454.1 918537 D 272559 CDS YP_210455.1 60680311 3288334 918777..920324 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0374 SWALL:AAO75481 (EMBL:AE016927) (516 aa) fasta scores: E(): 1.1e-156, 72.95% id in 514 aa, and to previously sequenced Bacteroides fragilis hypothetical 61.2 kDa protein SWALL:Q9RGI4 (EMBL:AF125164) (519 aa) fasta scores: E(): 1.3e-153, 74.12% id in 514 aa, and to Bacteroides thetaiotaomicron conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain BT1828 SWALL:AAO76935 (EMBL:AE016933) (520 aa) fasta scores: E(): 1.6e-145, 67.31% id in 514 aa; hypothetical protein 920324 3288334 BF9343_0721 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210455.1 918777 D 272559 CDS YP_210456.1 60680312 3288512 complement(920395..921396) 1 NC_003228.3 Similar to Salmonella typhimurium putative oxidoreductase STM2406 SWALL:Q8ZNA1 (EMBL:AE008808) (332 aa) fasta scores: E(): 5.2e-73, 59.09% id in 330 aa, and to Salmonella typhi putative ion-channel protein STY2647 or T0451 SWALL:Q8Z4X6 (EMBL:AL627274) (332 aa) fasta scores: E(): 6e-73, 59.09% id in 330 aa, and to Salmonella typhi putative ion-channel protein STY2647 or T0451 SWALL:AAO68163 (EMBL:AL627274) (332 aa) fasta scores: E(): 6e-73, 59.09% id in 330 aa; putative aldo/keto-reductase 921396 3288512 BF9343_0722 Bacteroides fragilis NCTC 9343 putative aldo/keto-reductase YP_210456.1 920395 R 272559 CDS YP_210457.1 60680313 3288344 921576..923744 1 NC_003228.3 Similar to Ruminococcus flavefaciens family 3 glycoside hydrolase XylA SWALL:Q9S307 (EMBL:AJ132472) (690 aa) fasta scores: E(): 9.4e-59, 38.06% id in 691 aa, and to Xanthomonas campestris glucan 1,4-beta-glucosidase XCC4106 SWALL:Q8P3G5 (EMBL:AE012534) (896 aa) fasta scores: E(): 3.7e-67, 35.97% id in 845 aa (with a large central deletion), and to Bacillus halodurans glucan 1,4-beta-glucosidase BH1908 SWALL:Q9KBL8 (EMBL:AP001513) (926 aa) fasta scores: E(): 7.8e-62, 35.89% id in 780 aa (with a large central deletion); putative glycosyl hydrolase 923744 3288344 BF9343_0723 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase YP_210457.1 921576 D 272559 CDS YP_210458.1 60680314 3288493 924125..927262 1 NC_003228.3 Similar to Bacteroides fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 1.3e-95, 33.82% id in 1076 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3103 SWALL:AAO78209 (EMBL:AE016939) (1061 aa) fasta scores: E(): 1.3e-98, 36.72% id in 1070 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1875 SWALL:AAO76982 (EMBL:AE016933) (1119 aa) fasta scores: E(): 1.5e-89, 33.89% id in 1065 aa; putative outer membrane protein 927262 3288493 BF9343_0724 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210458.1 924125 D 272559 CDS YP_210459.1 60680315 3288399 927288..928955 1 NC_003228.3 Similar to Bacteroides fragilis regulatory region FrrH SWALL:Q8VTA8 (EMBL:AF329100) (495 aa) fasta scores: E(): 4.5e-05, 23.29% id in 588 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3331 SWALL:AAO78437 (EMBL:AE016940) (572 aa) fasta scores: E(): 3.2e-25, 28.29% id in 576 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4659 SWALL:AAO79764 (EMBL:AE016946) (557 aa) fasta scores: E(): 6.6e-11, 25.62% id in 601 aa; putative outer membrane protein 928955 3288399 BF9343_0725 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210459.1 927288 D 272559 CDS YP_210460.1 60680316 3288498 928991..930097 1 NC_003228.3 putative lipoprotein 930097 3288498 BF9343_0726 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_210460.1 928991 D 272559 CDS YP_210461.1 60680317 3288481 930219..932012 1 NC_003228.3 no significant database matches; hypothetical protein 932012 3288481 BF9343_0727 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210461.1 930219 D 272559 CDS YP_210462.1 60680318 3288488 932009..935224 1 NC_003228.3 Similar to carbohydrate binding module of Lysobacter enzymogenes beta-1,3-Glucanase C GluC SWALL:Q8GCZ5 (EMBL:AY157840) (383 aa) fasta scores: E(): 4.3e-07, 27.41% id in 259 aa, and to carbohydrate binding module of Clostridium acetobutylicum endo-1,4-beta-xylanase XynD B.subtilis ortholog cap0115 SWALL:Q97TI6 (EMBL:AE001438) (458 aa) fasta scores: E(): 6.2e-09, 28.18% id in 220 aa, and to carbohydrate binding module of Streptomyces coelicolor putative secreted glucosidase sco6665 or sc5a7.15C SWALL:O88021 (EMBL:AL939128) (466 aa) fasta scores: E(): 2.9e-06, 31.4% id in 121 aa; putative secreted glucosidase 935224 3288488 BF9343_0728 Bacteroides fragilis NCTC 9343 putative secreted glucosidase YP_210462.1 932009 D 272559 CDS YP_210463.1 60680319 3288409 935224..936339 1 NC_003228.3 Similar to Pseudomonas fluorescens mannan endo-1,4-beta-mannosidase precursor ManA SWALL:MANA_PSEFL (SWALL:P49424) (419 aa) fasta scores: E(): 3.9e-34, 31.08% id in 386 aa, and to Cellulomonas fimi Man26A SWALL:Q9XCV5 (EMBL:AF126471) (1010 aa) fasta scores: E(): 9.3e-36, 37.22% id in 360 aa, and to Pseudomonas fluorescens mannan endo-1,4-beta-mannosidase precursor ManA SWALL:CAA57670 (EMBL:X82179) (423 aa) fasta scores: E(): 4e-34, 31.94% id in 360 aa. Note: Also similar to BF0771 (375 aa) fasta scores: E(): 7.1e-42, 35.142% identity in 387 aa overlap; putative mannanase 936339 3288409 BF9343_0729 Bacteroides fragilis NCTC 9343 putative mannanase YP_210463.1 935224 D 272559 CDS YP_210464.1 60680320 3288375 937761..940205 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis beta-glucosidase SWALL:O31356 (EMBL:AF006658) (764 aa) fasta scores: E(): 3.4e-90, 37.03% id in 756 aa, and to Bacteroides thetaiotaomicron periplasmic beta-glucosidase precursor, xylosidase/arabinosidase BT4714 SWALL:AAO79819 (EMBL:AE016946) (769 aa) fasta scores: E(): 1.3e-154, 54.46% id in 751 aa, and to Sulfolobus solfataricus beta-xylosidase SSO3032 SWALL:Q97UI4 (EMBL:AE006894) (754 aa) fasta scores: E(): 1.7e-108, 42.76% id in 760 aa; putative beta-glucosidase 940205 3288375 BF9343_0731 Bacteroides fragilis NCTC 9343 putative beta-glucosidase YP_210464.1 937761 D 272559 CDS YP_210465.1 60680321 3288516 940211..941464 1 NC_003228.3 Similar to Methylobacterium sp. CmuC protein SWALL:Q9X7G6 (EMBL:AJ011317) (378 aa) fasta scores: E(): 7.1e-05, 27.74% id in 155 aa, and limited similarity to Hyphomicrobium chloromethanicum methyltransferase CmuC SWALL:Q9APJ9 (EMBL:AF281259) (370 aa) fasta scores: E(): 0.00085, 24.03% id in 208 aa; possible methyltransferase 941464 3288516 BF9343_0732 Bacteroides fragilis NCTC 9343 possible methyltransferase YP_210465.1 940211 D 272559 CDS YP_210466.1 60680322 3288470 941645..942295 1 NC_003228.3 Similar to C-terminus of Bacteroides thetaiotaomicron trimethylamine corrinoid protein 2 BT0340 SWALL:AAO75447 (EMBL:AE016927) (602 aa) fasta scores: E(): 1e-46, 65.38% id in 208 aa, and to Rhizobium loti corrinoid methyltransferase protein Mlr1231 SWALL:Q98L10 (EMBL:AP002996) (238 aa) fasta scores: E(): 1.1e-27, 43.68% id in 206 aa, and to Methanosarcina barkeri dimethylamine corrinoid protein MtbC SWALL:MTBC_METBA (SWALL:O93657) (212 aa) fasta scores: E(): 1.4e-26, 46.86% id in 207 aa; putative B12-binding methyltransferase 942295 3288470 BF9343_0733 Bacteroides fragilis NCTC 9343 putative B12-binding methyltransferase YP_210466.1 941645 D 272559 CDS YP_210467.1 60680323 3288367 942298..943002 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0342 SWALL:AAO75449 (EMBL:AE016927) (257 aa) fasta scores: E(): 8.4e-21, 32.28% id in 254 aa, and to Clostridium tetani putative 5-methyltetrahydrofolate--homocysteine methyltransferase CTC01807 SWALL:AAO36331 (EMBL:AE015942) (226 aa) fasta scores: E(): 5.1e-06, 25.61% id in 203 aa; hypothetical protein 943002 3288367 BF9343_0734 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210467.1 942298 D 272559 CDS YP_210468.1 60680324 3288355 943009..944013 1 NC_003228.3 Similar to Methanosarcina barkeri methylcobamide:CoM methyltransferase MtbA or CmtA SWALL:MTBA_METBA (SWALL:O30640) (338 aa) fasta scores: E(): 8.3e-17, 29.88% id in 261 aa, and to Bacteroides thetaiotaomicron methylcobamide:CoM methyltransferase MtbA BT0343 SWALL:AAO75450 (EMBL:AE016927) (338 aa) fasta scores: E(): 5e-79, 59.4% id in 335 aa, and to Methanosarcina mazei methylcobamide:com methyltransferase MtbA or Mm1439 SWALL:MTBA_METMA (SWALL:P58984) (338 aa) fasta scores: E(): 3.2e-18, 30.37% id in 270 aa; putative methylcobamide:CoM methyltransferase 944013 3288355 BF9343_0735 Bacteroides fragilis NCTC 9343 putative methylcobamide:CoM methyltransferase YP_210468.1 943009 D 272559 CDS YP_210469.1 60680325 3289191 944105..945229 1 NC_003228.3 Similar to Pseudomonas fluorescens mannan endo-1,4-beta-mannosidase precursor ManA SWALL:MANA_PSEFL (SWALL:P49424) (419 aa) fasta scores: E(): 1.7e-30, 34.86% id in 370 aa, to Cellulomonas fimi Man26A SWALL:Q9XCV5 (EMBL:AF126471) (1010 aa) fasta scores: E(): 5.2e-31, 34.09% id in 396 aa, and to Pseudomonas fluorescens mannan endo-1,4-beta-mannosidase precursor ManA SWALL:CAA57670 (EMBL:X82179) (423 aa) fasta scores: E(): 1.7e-30, 33.65% id in 410 aa. Note: BF0764, (372 aa) fasta scores: E(): 1.6e-42, 35.401% identity in 387 aa overlap; putative mannosidase 945229 manA 3289191 manA Bacteroides fragilis NCTC 9343 putative mannosidase YP_210469.1 944105 D 272559 CDS YP_210470.1 60680326 3288404 945266..946438 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3028 SWALL:AAO78134 (EMBL:AE016938) (396 aa) fasta scores: E(): 1.5e-122, 72.56% id in 390 aa, and to Thermotoga maritima hypothetical protein Tm1225 SWALL:Q9X0V2 (EMBL:AE001779) (326 aa) fasta scores: E(): 8.5e-16, 30.06% id in 326 aa, and to Methanosarcina acetivorans hypothetical protein Ma2382 SWALL:Q8TNB1 (EMBL:AE010928) (335 aa) fasta scores: E(): 1.1e-14, 30.03% id in 333 aa; hypothetical protein 946438 3288404 BF9343_0737 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210470.1 945266 D 272559 CDS YP_210471.1 60680327 3288491 946455..947843 1 NC_003228.3 Similar to Xanthomonas campestris cation symporter YnaJ or XCC4078 SWALL:Q8P3J3 (EMBL:AE012530) (460 aa) fasta scores: E(): 1.7e-42, 37.63% id in 457 aa, and to Escherichia coli O6 hypothetical symporter YicJ or C4490 SWALL:Q8FC70 (EMBL:AE016769) (479 aa) fasta scores: E(): 2e-40, 34.91% id in 464 aa, and to Salmonella typhi, and Salmonella typhimurium sodium:galactoside family symporter YicJ or t3769 or STM3750 or STY4043 SWALL:Q8XEW1 (EMBL:AE016846) (460 aa) fasta scores: E(): 3e-40, 33.69% id in 457 aa; putative cation symporter 947843 3288491 BF9343_0738 Bacteroides fragilis NCTC 9343 putative cation symporter YP_210471.1 946455 D 272559 CDS YP_210472.1 60680328 3288497 947856..949034 1 NC_003228.3 Similar to Rhizobium meliloti hypothetical protein ra0026 or SMA0058 SWALL:Q931B8 (EMBL:AE007197) (398 aa) fasta scores: E(): 7.2e-13, 23.68% id in 380 aa, and to Homo sapiens N-acylglucosamine 2-epimerase RenBP SWALL:RNBP_HUMAN (SWALL:P51606) (417 aa) fasta scores: E(): 1.4e-10, 24.44% id in 405 aa, and to Mus musculus renin-binding protein RenBP SWALL:AAO66340 (EMBL:AY183138) (419 aa) fasta scores: E(): 2.6e-10, 23.71% id in 409 aa, and to Bacteroides thetaiotaomicron N-acylglucosamine 2-epimerase BT3605 SWALL:AAO78710 (EMBL:AE016941) (388 aa) fasta scores: E(): 1.3e-07, 24.45% id in 409 aa; hypothetical protein 949034 3288497 BF9343_0739 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210472.1 947856 D 272559 CDS YP_210473.1 60680329 3288475 949140..950867 1 NC_003228.3 Similar to Sulfolobus solfataricus amino acid transporter SSO1069 SWALL:Q97Z63 (EMBL:AE006725) blast scores: E(): 1.3, score: 37 22% id; putative transmembrane protein 950867 3288475 BF9343_0740 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210473.1 949140 D 272559 CDS YP_210474.1 60680330 3288462 950896..952329 1 NC_003228.3 no significant database matches; hypothetical protein 952329 3288462 BF9343_0741 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210474.1 950896 D 272559 CDS YP_210475.1 60680331 3288323 952333..953463 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative translation initiation inhibitor BT2475 SWALL:Q8A4X2 (EMBL:AE016936) (384 aa) fasta scores: E(): 2.3e-59, 54.01% id in 361 aa, and C-terminus is similar to Streptomyces avermitilis hypothetical protein sav75 SWALL:Q82RR8 (EMBL:AP005021) (129 aa) fasta scores: E(): 4.4e-07, 34.1% id in 129 aa; possible endoribonuclease 953463 3288323 BF9343_0742 Bacteroides fragilis NCTC 9343 possible endoribonuclease YP_210475.1 952333 D 272559 CDS YP_210476.1 60680332 3288453 953450..953797 1 NC_003228.3 no significant database matches; hypothetical protein 953797 3288453 BF9343_0743 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210476.1 953450 D 272559 CDS YP_210477.1 60680333 3288461 complement(954068..955186) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4056 SWALL:AAO79161 (EMBL:AE016943) (403 aa) fasta scores: E(): 1.5e-23, 32.08% id in 399 aa, and to Leptospira kirschneri serovar grippotyphosa outer membrane lipoprotein Lipl48 SWALL:Q8KWV1 (EMBL:AF394742) (461 aa) fasta scores: E(): 2.2e-23, 34.79% id in 273 aa, and to Leptospira interrogans hypothetical protein La3240 SWALL:Q8F196 (EMBL:AE011485) (511 aa) fasta scores: E(): 2.4e-23, 32.72% id in 327 aa; hypothetical protein 955186 3288461 BF9343_0744 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210477.1 954068 R 272559 CDS YP_210478.1 60680334 3288333 complement(955289..956557) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4056 SWALL:AAO79161 (EMBL:AE016943) (403 aa) fasta scores: E(): 6.5e-30, 37.61% id in 335 aa, and to Leptospira interrogans hypothetical protein La3240 SWALL:Q8F196 (EMBL:AE011485) (511 aa) fasta scores: E(): 9.5e-24, 30.96% id in 465 aa, and to Leptospira kirschneri serovar grippotyphosa outer membrane lipoprotein LIPl48 SWALL:Q8KWV1 (EMBL:AF394742) (461 aa) fasta scores: E(): 3.3e-22, 31.14% id in 427 aa; hypothetical protein 956557 3288333 BF9343_0745 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210478.1 955289 R 272559 CDS YP_210479.1 60680335 3288460 complement(956632..959331) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TonB-dependent receptor BT4055 SWALL:AAO79160 (EMBL:AE016943) (904 aa) fasta scores: E(): 1.5e-44, 32.7% id in 908 aa, and to Leptospira interrogans tonb-dependent receptor La3242 SWALL:Q8F194 (EMBL:AE011485) (991 aa) fasta scores: E(): 6.8e-23, 26.37% id in 1001 aa, and to Shewanella oneidensis conserved hypothetical protein so2523 SWALL:Q8EE66 (EMBL:AE015694) (943 aa) fasta scores: E(): 7.4e-18, 20% id in 950 aa; putative TonB-dependent receptor protein 959331 3288460 BF9343_0746 Bacteroides fragilis NCTC 9343 putative TonB-dependent receptor protein YP_210479.1 956632 R 272559 CDS YP_210480.1 60680336 3288501 959599..962358 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT4057 SWALL:Q8A0G4 (EMBL:AE016943) (921 aa) fasta scores: E(): 0, 69.11% id in 913 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1833 SWALL:Q8A6P4 (EMBL:AE016933) (882 aa) fasta scores: E(): 3.8e-131, 55.18% id in 810 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT0998 SWALL:Q8A919 (EMBL:AE016930) (810 aa) fasta scores: E(): 9.5e-105, 44.66% id in 918 aa; putative two-component system sensor histidine kinase 962358 3288501 BF9343_0747 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase YP_210480.1 959599 D 272559 CDS YP_210481.1 60680337 3289170 complement(962455..963906) 1 NC_003228.3 Similar to Synechocystis sp NdhB gene SWALL:Q55269 (EMBL:D90288) (521 aa) fasta scores: E(): 1.3e-51, 34.76% id in 466 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain N BT4058 SWALL:AAO79163 (EMBL:AE016943) (480 aa) fasta scores: E(): 3.2e-149, 77.68% id in 484 aa, and to Rhizobium meliloti probable NADH dehydrogenase I chain N transmembrane protein NuoN or r01279 or SMC01927 SWALL:Q92QN9 (EMBL:AL591786) (480 aa) fasta scores: E(): 2.7e-55, 35.6% id in 469 aa; putative NADH dehydrogenase chain N 963906 nuoN 3289170 nuoN Bacteroides fragilis NCTC 9343 putative NADH dehydrogenase chain N YP_210481.1 962455 R 272559 CDS YP_210482.1 60680338 3289188 complement(963913..965397) 1 NC_003228.3 Similar to Rhizobium meliloti putative NADH-ubiquinone oxidoreductase subunit NuoM3 SWALL:Q9EV68 (EMBL:AJ245399) (491 aa) fasta scores: E(): 3.6e-54, 34.84% id in 485 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain M BT4059 SWALL:AAO79164 (EMBL:AE016943) (494 aa) fasta scores: E(): 1.5e-186, 94.13% id in 494 aa, and to Brucella suis NADH dehydrogenase I, M subunit NuoM or BR0814 SWALL:Q8G1A5 (EMBL:AE014385) (502 aa) fasta scores: E(): 1.2e-54, 34.54% id in 495 aa; putative NADH-ubiquinone oxidoreductase subunit 965397 nuoM 3289188 nuoM Bacteroides fragilis NCTC 9343 putative NADH-ubiquinone oxidoreductase subunit YP_210482.1 963913 R 272559 CDS YP_210483.1 60680339 3289157 complement(965410..967320) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain L BT4060 SWALL:AAO79165 (EMBL:AE016943) (643 aa) fasta scores: E(): 0, 87.55% id in 643 aa, and to Synechococcus elongatus NADH dehydrogenase subunit 5 NdhF1 or tll0720 SWALL:Q8DKX9 (EMBL:AP005371) (656 aa) fasta scores: E(): 3e-81, 42% id in 669 aa, and to Nephroselmis olivacea subunit 5 of NADH-plastoquinoneoxidoreductase NdhF SWALL:Q9TKV7 (EMBL:AF137379) (648 aa) fasta scores: E(): 2.9e-80, 41.13% id in 654 aa; putative NADH dehydrogenase chain L 967320 nuoL 3289157 nuoL Bacteroides fragilis NCTC 9343 putative NADH dehydrogenase chain L YP_210483.1 965410 R 272559 CDS YP_210484.1 60680340 3285938 complement(967357..967668) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain K BT4061 SWALL:AAO79166 (EMBL:AE016943) (102 aa) fasta scores: E(): 3.7e-38, 95.09% id in 102 aa, and to Synechococcus sp. NADH dehydrogenase subunit E NdhE SWALL:Q8KX57 (EMBL:AF381034) (103 aa) fasta scores: E(): 3.7e-16, 42.71% id in 103 aa, and to Plectonema boryanum NAD(P)H-quinone oxidoreductase NdhE or Ndh4L SWALL:NULC_PLEBO (SWALL:Q00244) (101 aa) fasta scores: E(): 6.2e-15, 38.61% id in 101 aa; putative NADH dehydrogenase chain K 967668 nuoK 3285938 nuoK Bacteroides fragilis NCTC 9343 putative NADH dehydrogenase chain K YP_210484.1 967357 R 272559 CDS YP_210485.1 60680341 3289164 complement(967675..968187) 1 NC_003228.3 Similar to Synechocystis sp. NAD NdhG or sll0521 SWALL:NU6C_SYNY3 (SWALL:P26523) (198 aa) fasta scores: E(): 9.8e-10, 32.93% id in 167 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain J BT4062 SWALL:AAO79167 (EMBL:AE016943) (170 aa) fasta scores: E(): 7.1e-49, 81.17% id in 170 aa, and to Methanosarcina mazei f420h2 dehydrogenase subunit FpoJ SWALL:Q9P9F7 (EMBL:AF228525) (176 aa) fasta scores: E(): 2.4e-12, 35.67% id in 171 aa; putative NADH dehydrogenase chain J 968187 nuoJ 3289164 nuoJ Bacteroides fragilis NCTC 9343 putative NADH dehydrogenase chain J YP_210485.1 967675 R 272559 CDS YP_210486.1 60680342 3289163 complement(968194..968673) 1 NC_003228.3 Similar to Pseudomonas fluorescens NADH dehydrogenase I subunit I NuoI SWALL:Q8RQ74 (EMBL:AF281148) (182 aa) fasta scores: E(): 3.3e-13, 36.42% id in 140 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain I BT4063 SWALL:AAO79168 (EMBL:AE016943) (162 aa) fasta scores: E(): 2.2e-55, 87.97% id in 158 aa, and to Pseudomonas syringae NADH dehydrogenase I, I subunit NuoI or PSPTO3372 SWALL:AAO56850 (EMBL:AE016868) (182 aa) fasta scores: E(): 1e-13, 37.14% id in 140 aa; putative NADH dehydrogenase I subunit I 968673 nuoI 3289163 nuoI Bacteroides fragilis NCTC 9343 putative NADH dehydrogenase I subunit I YP_210486.1 968194 R 272559 CDS YP_210487.1 60680343 3285965 complement(968690..969766) 1 NC_003228.3 Similar to Streptomyces coelicolor nuoh, NADH dehydrogenase subunit NuoH or sco4569 or scd16a.14C SWALL:Q9XAR1 (EMBL:AL939120) (467 aa) fasta scores: E(): 1.6e-46, 37.5% id in 336 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain H BT4064 SWALL:AAO79169 (EMBL:AE016943) (358 aa) fasta scores: E(): 2.2e-135, 88.26% id in 358 aa, and to Heliobacillus mobilis NADH-quinone oxidoreductase chain H SWALL:Q8GDW1 (EMBL:AY142861) (337 aa) fasta scores: E(): 3.6e-62, 46.08% id in 332 aa; putative NADH dehydrogenase subunit H 969766 nuoH 3285965 nuoH Bacteroides fragilis NCTC 9343 putative NADH dehydrogenase subunit H YP_210487.1 968690 R 272559 CDS YP_210488.1 60680344 3289174 complement(969846..971438) 1 NC_003228.3 Similar to Escherichia coli NADH-quinone oxidoreductase chain C/D NuoC or NuoCD or NuoD or B2286 but truncated 45 amino acids at the N-terminus SWALL:NUCD_ECOLI (SWALL:P33599) (600 aa) fasta scores: E(): 3.2e-44, 31.05% id in 541 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain D BT4065 SWALL:AAO79170 (EMBL:AE016943) (538 aa) fasta scores: E(): 3.9e-195, 88.49% id in 530 aa, and C-terminus is similar to entire protein of Thermoplasma acidophilum probable NADH dehydrogenase, chain D ta0967 SWALL:Q9HJK0 (EMBL:AL445066) (369 aa) fasta scores: E(): 1.7e-52, 42.38% id in 361 aa; putative NADH-quinone oxidoreductase chain C/D 971438 nuoC 3289174 nuoC Bacteroides fragilis NCTC 9343 putative NADH-quinone oxidoreductase chain C/D YP_210488.1 969846 R 272559 CDS YP_210489.1 60680345 3289152 complement(971460..972050) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri NADH-quinone oxidoreductase chain B NuoB or B2287 or C2828 or Z3546 or ECS3171 or SF2363 or s2498 SWALL:NUOB_ECOLI (SWALL:P33598) (220 aa) fasta scores: E(): 2.1e-32, 55.06% id in 158 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain B BT4066 SWALL:AAO79171 (EMBL:AE016943) (197 aa) fasta scores: E(): 1.6e-74, 93.81% id in 194 aa, and to Mus musculus 1010001m04rik protein ndufs7 or 1010001m04riK SWALL:Q9DC70 (EMBL:AK003132) (224 aa) fasta scores: E(): 4.7e-34, 56.12% id in 155 aa; NADH-quinone oxidoreductase chain B 972050 nuoB 3289152 nuoB Bacteroides fragilis NCTC 9343 NADH-quinone oxidoreductase chain B YP_210489.1 971460 R 272559 CDS YP_210490.1 60680346 3288149 complement(972041..972391) 1 NC_003228.3 Similar to Rhodobacter capsulatus NADH-quinone oxidoreductase chain A NuoA SWALL:NUOA_RHOCA (SWALL:O84969) (126 aa) fasta scores: E(): 1.6e-15, 44.54% id in 110 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain A BT4067 SWALL:AAO79172 (EMBL:AE016943) (116 aa) fasta scores: E(): 2.2e-42, 87.93% id in 116 aa, and to Anthoceros formosae NAD(P)H-quinone oxidoreductase NdhC SWALL:NU3C_ANTFO (SWALL:Q31792) (120 aa) fasta scores: E(): 4.1e-20, 47.74% id in 111 aa, and to Mesostigma viride NAD(P)H-quinone oxidoreductase ndhC SWALL:NU3C_MESVI (SWALL:Q9MUQ9) (120 aa) fasta scores: E(): 3.1e-18, 44.95% id in 109 aa; NADH-quinone oxidoreductase chain A 972391 nuoA 3288149 nuoA Bacteroides fragilis NCTC 9343 NADH-quinone oxidoreductase chain A YP_210490.1 972041 R 272559 CDS YP_210491.1 60680347 3288459 complement(972535..972912) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4068 SWALL:AAO79173 (EMBL:AE016943) (125 aa) fasta scores: E(): 2e-17, 43.3% id in 127 aa; hypothetical protein 972912 3288459 BF9343_0758 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210491.1 972535 R 272559 CDS YP_210492.1 60680348 3288326 complement(973099..974550) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri Trk system potassium uptake protein TrkH or B3849 or Z5371 or ECS4777 or SF3925 or s3827 SWALL:TRKH_ECOLI (SWALL:P21166) (483 aa) fasta scores: E(): 3e-66, 38.76% id in 485 aa, and to Bacteroides thetaiotaomicron Trk system K+ uptake protein TrkH BT4097 SWALL:AAO79202 (EMBL:AE016943) (483 aa) fasta scores: E(): 1.4e-157, 76.19% id in 483 aa, and to Clostridium tetani potassium uptake protein TrkH or CTC00235 SWALL:AAO34883 (EMBL:AE015936) (484 aa) fasta scores: E(): 3.3e-77, 41.35% id in 486 aa; putative potassium uptake protein 974550 3288326 BF9343_0759 Bacteroides fragilis NCTC 9343 putative potassium uptake protein YP_210492.1 973099 R 272559 CDS YP_210493.1 60680349 3288507 complement(974555..975895) 1 NC_003228.3 Similar to Haemophilus influenzae Trk system potassium uptake protein TrkA or hi0625 SWALL:TRKA_HAEIN (SWALL:P71354) (458 aa) fasta scores: E(): 3.6e-37, 32.45% id in 456 aa, and to Bacteroides thetaiotaomicron Trk system K+ uptake protein TrkA BT4098 SWALL:AAO79203 (EMBL:AE016943) (446 aa) fasta scores: E(): 9.9e-155, 94.39% id in 446 aa, and to Clostridium tetani potassium uptake protein TrkA or CTC00236 SWALL:AAO34884 (EMBL:AE015936) (489 aa) fasta scores: E(): 1.8e-39, 31.96% id in 438 aa; putative potassium uptake protein 975895 3288507 BF9343_0760 Bacteroides fragilis NCTC 9343 putative potassium uptake protein YP_210493.1 974555 R 272559 CDS YP_210494.1 60680350 3285133 complement(975934..977880) 1 NC_003228.3 Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate synthase Dxs or B0420 SWALL:DXS_ECOLI (SWALL:P77488) (619 aa) fasta scores: E(): 3.1e-101, 43.87% id in 620 aa, and to Bacteroides thetaiotaomicron 1-deoxy-D-xylulose 5-phosphate synthase BT4099 SWALL:Q8A0C2 (EMBL:AE016943) (647 aa) fasta scores: E(): 0, 84.62% id in 631 aa, and to Chlorobium tepidum 1-deoxy-D-xylulose 5-phosphate synthase Dxs or CT0337 SWALL:DXS_CHLTE (SWALL:Q8KFI9) (635 aa) fasta scores: E(): 3.3e-113, 48.95% id in 623 aa; putative 1-deoxy-D-xylulose 5-phosphate synthase 977880 dxs 3285133 dxs Bacteroides fragilis NCTC 9343 putative 1-deoxy-D-xylulose 5-phosphate synthase YP_210494.1 975934 R 272559 CDS YP_210495.1 60680351 3288626 complement(978379..979722) 1 NC_003228.3 Similar to Oceanobacillus iheyensis hypothetical conserved protein ob2742 SWALL:Q8EMU8 (EMBL:AP004602) (436 aa) fasta scores: E(): 8.1e-37, 33.55% id in 447 aa, and to Thermotoga maritima hypothetical protein Tm0336 SWALL:Q9WYH1 (EMBL:AE001714) (412 aa) fasta scores: E(): 4.6e-24, 33.79% id in 429 aa, and to Halobacterium sp. Vng1418C SWALL:Q9HPY2 (EMBL:AE005059) (432 aa) fasta scores: E(): 1.5e-18, 28.71% id in 390 aa; hypothetical protein 979722 3288626 BF9343_0762 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210495.1 978379 R 272559 CDS YP_210496.1 60680352 3288652 complement(979719..980015) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4196 SWALL:AAO79301 (EMBL:AE016944) (100 aa) fasta scores: E(): 3.2e-14, 47.95% id in 98 aa; putative transmembrane protein 980015 3288652 BF9343_0763 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210496.1 979719 R 272559 CDS YP_210497.1 60680353 3288683 980221..980868 1 NC_003228.3 Similar to Alcaligenes eutrophus phosphoglycolate phosphatase, chromosomal CbbZC SWALL:GPHC_ALCEU (SWALL:P40852) (231 aa) fasta scores: E(): 3.2e-10, 26.19% id in 210 aa, and to Bacteroides thetaiotaomicron phosphoglycolate phosphatase BT4184 SWALL:AAO79289 (EMBL:AE016944) (216 aa) fasta scores: E(): 1.6e-64, 77.2% id in 215 aa, and to Chlorobium tepidum phosphoglycolate phosphatase Gph or CT0889 SWALL:Q8KE05 (EMBL:AE012855) (225 aa) fasta scores: E(): 1.1e-24, 38.86% id in 211 aa; putative phosphoglycolate phosphatase 980868 3288683 BF9343_0764 Bacteroides fragilis NCTC 9343 putative phosphoglycolate phosphatase YP_210497.1 980221 D 272559 CDS YP_210498.1 60680354 3288764 complement(980948..982504) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative secreted sulfatase YdeN precursor BT3796 SWALL:AAO78901 (EMBL:AE016942) (518 aa) fasta scores: E(): 3.8e-172, 78.18% id in 518 aa, and to Bacteroides thetaiotaomicron N-acetylgalactosamine-6-sulfatase precursor BT3057 SWALL:AAO78163 (EMBL:AE016938) (508 aa) fasta scores: E(): 1.4e-46, 41.21% id in 512 aa, and to Caulobacter crescentus sulfatase family protein Cc1172 SWALL:Q9A922 (EMBL:AE005795) (521 aa) fasta scores: E(): 1.8e-20, 28.62% id in 524 aa; putative secreted sulfatase 982504 3288764 BF9343_0765 Bacteroides fragilis NCTC 9343 putative secreted sulfatase YP_210498.1 980948 R 272559 CDS YP_210499.1 60680355 3288700 complement(982525..984600) 1 NC_003228.3 C-terminus is similar to Bifidobacterium breve alpha-galactosidase Aga SWALL:Q93CM6 (EMBL:AF406640) (702 aa) fasta scores: E(): 1.3e-13, 28.64% id in 391 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3797 SWALL:AAO78902 (EMBL:AE016942) (693 aa) fasta scores: E(): 2.6e-195, 66.76% id in 695 aa, and to Sulfolobus tokodaii putative Sip1 protein st2554 SWALL:Q96XG2 (EMBL:AP000990) (674 aa) fasta scores: E(): 4.1e-30, 27.88% id in 538 aa; possible alpha-galactosidase 984600 3288700 BF9343_0766 Bacteroides fragilis NCTC 9343 possible alpha-galactosidase YP_210499.1 982525 R 272559 CDS YP_210500.1 60680356 3288639 complement(984610..985992) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3798 SWALL:AAO78903 (EMBL:AE016942) (460 aa) fasta scores: E(): 3.8e-180, 89.1% id in 459 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4136 SWALL:AAO79241 (EMBL:AE016943) (605 aa) fasta scores: E(): 1.1e-34, 31.14% id in 456 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1625 SWALL:AAO76732 (EMBL:AE016932) (605 aa) fasta scores: E(): 4e-32, 30.83% id in 441 aa; hypothetical protein 985992 3288639 BF9343_0767 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210500.1 984610 R 272559 CDS YP_210501.1 60680357 3288723 complement(985995..987446) 1 NC_003228.3 Similar to Prevotella sp. RS2 mucin-desulfating sulfatase MdsA precursor SWALL:Q9L5W0 (EMBL:AF248951) (517 aa) fasta scores: E(): 5.1e-17, 28.57% id in 518 aa, and to Bacteroides thetaiotaomicron putative sulfatase YidJ BT3799 SWALL:AAO78904 (EMBL:AE016942) (489 aa) fasta scores: E(): 1.5e-160, 78.69% id in 474 aa, and to Yersinia pestis putative sulfatase YPO0829 or Y3215 SWALL:Q8ZHR0 (EMBL:AJ414144) (517 aa) fasta scores: E(): 1e-68, 43.42% id in 479 aa; putative sulfatase 987446 3288723 BF9343_0768 Bacteroides fragilis NCTC 9343 putative sulfatase YP_210501.1 985995 R 272559 CDS YP_210502.1 60680358 3288672 complement(987561..989543) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2806 SWALL:AAO77912 (EMBL:AE016937) (666 aa) fasta scores: E(): 5.3e-51, 43.72% id in 693 aa, and identical to previously sequenced Bacteroides fragilis hypothetical protein (fragment) SWALL:BAC56894 (EMBL:AB102772) (218 aa) fasta scores: E(): 1.8e-33, 43.42% id in 228 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3175 SWALL:AAO78281 (EMBL:AE016939) (621 aa) fasta scores: E(): 2.4e-25, 27.69% id in 686 aa; hypothetical protein 989543 3288672 BF9343_0769 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210502.1 987561 R 272559 CDS YP_210503.1 60680359 3288728 complement(989556..992741) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 1.7e-57, 29.77% id in 1088 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 4.8e-187, 46.58% id in 1084 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4357 SWALL:AAO79462 (EMBL:AE016945) (1178 aa) fasta scores: E(): 2.2e-119, 37.4% id in 1088 aa; putative outer membrane protein 992741 3288728 BF9343_0770 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210503.1 989556 R 272559 CDS YP_210504.1 60680360 3288373 992927..997012 1 NC_003228.3 Similar to Pseudomonas putida bZIP histidine kinase TobS SWALL:Q9EVJ0 (EMBL:AF180147) (978 aa) fasta scores: E(): 2.3e-34, 31.41% id in 452 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT3800 SWALL:AAO78905 (EMBL:AE016942) (1333 aa) fasta scores: E(): 0, 61.14% id in 1333 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT2391 SWALL:AAO77498 (EMBL:AE016935) (1377 aa) fasta scores: E(): 3.7e-183, 46.94% id in 1374 aa; putative two-component system sensor histidine kinase/response regulator fusion protein 997012 3288373 BF9343_0771 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase/response regulator fusion protein YP_210504.1 992927 D 272559 CDS YP_210505.1 60680361 3288400 complement(997179..998603) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 hexuronate transporter ExuT or B3093 or Z4446 or ECS3975 SWALL:EXUT_ECOLI (SWALL:P42609) (472 aa) fasta scores: E(): 2e-23, 28.27% id in 481 aa, and to Bacteroides thetaiotaomicron hexuronate transporter BT4105 SWALL:Q8A0B6 (EMBL:AE016943) (495 aa) fasta scores: E(): 8.6e-151, 78.78% id in 495 aa, and to Pseudomonas syringae MFS transporter, phthalate permease family PSPTO5219 SWALL:Q87US7 (EMBL:AE016875) (436 aa) fasta scores: E(): 4.9e-25, 29.58% id in 480 aa; putative hexuronate transporter 998603 3288400 BF9343_0772 Bacteroides fragilis NCTC 9343 putative hexuronate transporter YP_210505.1 997179 R 272559 CDS YP_210506.1 60680362 3288800 999068..1000417 1 NC_003228.3 Similar to Dictyostelium discoideum alpha-L-fucosidase precursor AlfA SWALL:FUCO_DICDI (SWALL:P10901) (461 aa) fasta scores: E(): 1.5e-25, 29.06% id in 406 aa, and to Homo sapiens hypothetical protein Flj35595 SWALL:Q8NAC2 (EMBL:AK092914) (444 aa) fasta scores: E(): 3.3e-29, 28.96% id in 397 aa, and to Thermotoga maritima alpha-L-fucosidase, putative TM0306 SWALL:Q9WYE2 (EMBL:AE001712) (449 aa) fasta scores: E(): 1.1e-28, 33.01% id in 418 aa; putative alpha-L-fucosidase 1000417 3288800 BF9343_0773 Bacteroides fragilis NCTC 9343 putative alpha-L-fucosidase YP_210506.1 999068 D 272559 CDS YP_210507.1 60680363 3288840 1000436..1001683 1 NC_003228.3 no significant database matches; hypothetical protein 1001683 3288840 BF9343_0774 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210507.1 1000436 D 272559 CDS YP_210508.1 60680364 3288812 complement(1002004..1005450) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron DNA helicase BT4104 SWALL:Q8A0B7 (EMBL:AE016943) (1124 aa) fasta scores: E(): 8.2e-184, 78.3% id in 1143 aa, and to Synechocystis sp. hypothetical protein Sll1582 sll1582 SWALL:P73197 (EMBL:D90904) (1118 aa) fasta scores: E(): 8.2e-17, 27.78% id in 997 aa, and to Anopheles gambiae str. PEST ensangp00000021787 SWALL:EAA04125 (EMBL:AAAB01008807) (1040 aa) fasta scores: E(): 2.2e-10, 24.61% id in 642 aa; hypothetical protein 1005450 3288812 BF9343_0775 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210508.1 1002004 R 272559 CDS YP_210509.1 60680365 3288841 complement(1005561..1006601) 1 NC_003228.3 Similar to Streptomyces avermitilis putative macrolide O-acyltransferase MdmB or sav3790 SWALL:Q82GV6 (EMBL:AP005036) (392 aa) fasta scores: E(): 1.2e-14, 29.41% id in 306 aa, and to Bacteroides thetaiotaomicron acyltransferase BT1546 SWALL:Q8A7H8 (EMBL:AE016932) (335 aa) fasta scores: E(): 4e-91, 64.75% id in 332 aa, and to Streptomyces mycarofaciens acyltransferase MdmB SWALL:MDMB_STRMY (SWALL:Q00718) (387 aa) fasta scores: E(): 6.2e-14, 27.67% id in 318 aa; putative transmembrane acyltransferase 1006601 3288841 BF9343_0776 Bacteroides fragilis NCTC 9343 putative transmembrane acyltransferase YP_210509.1 1005561 R 272559 CDS YP_210510.1 60680366 3288509 complement(1006809..1007603) 1 NC_003228.3 Similar to Campylobacter jejuni SEC-independent protein translocase protein TatC homolog or MttB or cj0578C SWALL:TATC_CAMJE (SWALL:Q9PHT8) (245 aa) fasta scores: E(): 7.9e-20, 28.68% id in 251 aa, and to Bacteroides thetaiotaomicron putative Sec-independent protein translocase BT4103 SWALL:AAO79208 (EMBL:AE016943) (273 aa) fasta scores: E(): 1.7e-97, 89.8% id in 255 aa, and to Heliobacillus mobilis Sec-independent protein translocase protein TatC SWALL:Q8GDT4 (EMBL:AY142890) (249 aa) fasta scores: E(): 1.5e-23, 33.97% id in 259 aa; putative Sec-independent protein translocase component 1007603 3288509 BF9343_0777 Bacteroides fragilis NCTC 9343 putative Sec-independent protein translocase component YP_210510.1 1006809 R 272559 CDS YP_210511.1 60680367 3288484 complement(1007680..1007907) 1 NC_003228.3 Similar to Campylobacter jejuni Sec-independent protein translocase protein TatA/E homolog TatA or CJ1176C SWALL:TATA_CAMJE (SWALL:Q9PNB9) (79 aa) fasta scores: E(): 8.1e-08, 47.82% id in 69 aa, and to Bacteroides thetaiotaomicron putative Sec-independent protein translocase BT4102 SWALL:AAO79207 (EMBL:AE016943) (73 aa) fasta scores: E(): 4.6e-20, 86.3% id in 73 aa, and to Chlorobium tepidum Sec-independent protein translocase protein TatE, putative CT1616 SWALL:Q8KC14 (EMBL:AE012916) (67 aa) fasta scores: E(): 2.9e-08, 51.42% id in 70 aa; putative Sec-independent protein translocase component 1007907 3288484 BF9343_0778 Bacteroides fragilis NCTC 9343 putative Sec-independent protein translocase component YP_210511.1 1007680 R 272559 CDS YP_210512.1 60680368 3288407 complement(1008069..1010591) 1 NC_003228.3 C-terminal region similar to Thermoanaerobacter tengcongensis alanine racemase 2 AlrR or TTE2168 SWALL:ALR2_THETN (SWALL:Q8R860) (388 aa) fasta scores: E(): 8.7e-39, 38.07% id in 373 aa, and to Bacteroides thetaiotaomicron alanine racemase BT4101 SWALL:Q8A0C0 (EMBL:AE016943) (773 aa) fasta scores: E(): 0, 86.53% id in 750 aa, and N-terminal region to Staphylococcus epidermidis UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase SE1680 SWALL:Q8CNK5 (EMBL:AE016749) (451 aa) fasta scores: E(): 2.7e-24, 26.93% id in 427 aa; putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein 1010591 3288407 BF9343_0779 Bacteroides fragilis NCTC 9343 putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein YP_210512.1 1008069 R 272559 CDS YP_210513.1 60680369 3288444 complement(1010594..1011580) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4100 SWALL:AAO79205 (EMBL:AE016943) (329 aa) fasta scores: E(): 9.4e-90, 67.27% id in 327 aa; hypothetical protein 1011580 3288444 BF9343_0780 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210513.1 1010594 R 272559 CDS YP_210514.1 60680370 3288761 complement(1012680..1013069) 1 NC_003228.3 no significant database matches; hypothetical protein 1013069 3288761 BF9343_0781 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210514.1 1012680 R 272559 CDS YP_210515.1 60680371 3288584 1013494..1013859 1 NC_003228.3 Similar to Staphylococcus sciuri transcriptional regulator MecI protein SWALL:O54281 (EMBL:Y13095) (123 aa) fasta scores: E(): 2.2e-05, 28.44% id in 116 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4198 SWALL:AAO79303 (EMBL:AE016944) (121 aa) fasta scores: E(): 3.4e-37, 82.64% id in 121 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT0635 SWALL:AAO75742 (EMBL:AE016928) (125 aa) fasta scores: E(): 5.5e-29, 61.15% id in 121 aa; putative regulatory protein 1013859 3288584 BF9343_0782 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_210515.1 1013494 D 272559 CDS YP_210516.1 60680372 3288743 1013875..1015437 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4201 SWALL:AAO79306 (EMBL:AE016944) (813 aa) fasta scores: E(): 1.7e-84, 56.78% id in 472 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4200 SWALL:AAO79305 (EMBL:AE016944) (710 aa) fasta scores: E(): 6.7e-61, 57.7% id in 454 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4199 SWALL:AAO79304 (EMBL:AE016944) (538 aa) fasta scores: E(): 1.4e-40, 37.19% id in 492 aa; hypothetical protein 1015437 3288743 BF9343_0783 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210516.1 1013875 D 272559 CDS YP_210517.1 60680373 3288792 1015455..1015628 1 NC_003228.3 no significant database matches; hypothetical protein 1015628 3288792 BF9343_0784 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210517.1 1015455 D 272559 CDS YP_210518.1 60680374 3288762 1015679..1017721 1 NC_003228.3 is similar to C-terminus of Bacillus halodurans two-component sensor histidine kinase BH1199 SWALL:Q9KDL3 (EMBL:AP001511) (351 aa) fasta scores: E(): 1.9e-12, 31.47% id in 251 aa, and C-terminus of Pseudomonas putida sensory box histidine kinase PP0409 SWALL:AAN66039 (EMBL:AE016775) (795 aa) fasta scores: E(): 3.3e-12, 34.86% id in 218 aa, and C-terminus of Oceanobacillus iheyensis two-component sensor histidine kinase ob2823 SWALL:Q8EML9 (EMBL:AP004602) (350 aa) fasta scores: E(): 5.3e-12, 30.04% id in 253 aa; putative transmembrane protein 1017721 3288762 BF9343_0785 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210518.1 1015679 D 272559 CDS YP_210519.1 60680375 3288777 complement(1017817..1018992) 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) blast scores: E(): 0.005, score: 44 18% id; hypothetical protein 1018992 3288777 BF9343_0786 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210519.1 1017817 R 272559 CDS YP_210520.1 60680376 3289215 complement(1019290..1020195) 1 NC_003228.3 Similar to Escherichia coli tRNA delta(2)-isopentenylpyrophosphate transferase MiaA or TrpX or B4171 SWALL:MIAA_ECOLI (SWALL:P16384) (316 aa) fasta scores: E(): 8.4e-24, 29.23% id in 301 aa, and to Bacteroides thetaiotaomicron tRNA delta(2)-isopentenylpyrophosphate transferase BT4203 SWALL:AAO79308 (EMBL:AE016944) (308 aa) fasta scores: E(): 8e-91, 85.32% id in 293 aa, and to Bacillus subtilis tRNA delta(2)-isopentenylpyrophosphate transferase MiaA SWALL:MIAA_BACSU (SWALL:O31795) (314 aa) fasta scores: E(): 5.5e-32, 36.21% id in 312 aa; putative tRNA delta(2)-isopentenylpyrophosphate transferase 1020195 miaA 3289215 miaA Bacteroides fragilis NCTC 9343 putative tRNA delta(2)-isopentenylpyrophosphate transferase YP_210520.1 1019290 R 272559 CDS YP_210521.1 60680377 3288815 complement(1020292..1020855) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4204 SWALL:Q8A017 (EMBL:AE016944) (184 aa) fasta scores: E(): 1.4e-61, 85.56% id in 187 aa; hypothetical protein 1020855 3288815 BF9343_0788 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210521.1 1020292 R 272559 CDS YP_210522.1 60680378 3287875 complement(1020989..1021756) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase LpxA or B0181 or c0218 or SF0171 or s0174 SWALL:LPXA_ECOLI (SWALL:P10440) (262 aa) fasta scores: E(): 6.5e-36, 42.2% id in 263 aa, and to Bacteroides thetaiotaomicron acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase BT4205 SWALL:AAO79310 (EMBL:AE016944) (255 aa) fasta scores: E(): 9.7e-89, 89.41% id in 255 aa, and to Bacteroides thetaiotaomicron UDP-N-acetylglucosamine acetyltransferase BT3336 SWALL:AAO78442 (EMBL:AE016940) (256 aa) fasta scores: E(): 3.8e-49, 50.78% id in 256 aa; putative acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 1021756 lpxA 3287875 lpxA Bacteroides fragilis NCTC 9343 putative acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_210522.1 1020989 R 272559 CDS YP_210523.1 60680379 3289240 complement(1021767..1023152) 1 NC_003228.3 Similar to Ralstonia solanacearum UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC or RSC2837 or RS00268 SWALL:LPXC_RALSO (SWALL:Q9KHL6) (305 aa) fasta scores: E(): 1.9e-23, 35.79% id in 338 aa, and to Bacteroides thetaiotaomicron UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase BT4206 SWALL:AAO79311 (EMBL:AE016944) (461 aa) fasta scores: E(): 8.1e-169, 93.92% id in 461 aa, and to Chlorobium tepidum UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylase/ LpxC/FabZ or CT1662 SWALL:Q8KBX0 (EMBL:AE012921) (467 aa) fasta scores: E(): 1.3e-72, 42.91% id in 466 aa; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1023152 lpxC 3289240 lpxC Bacteroides fragilis NCTC 9343 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_210523.1 1021767 R 272559 CDS YP_210524.1 60680380 3289227 complement(1023156..1024196) 1 NC_003228.3 Similar to Rickettsia rickettsii UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD or FirA SWALL:LPXD_RICRI (SWALL:P32202) (345 aa) fasta scores: E(): 1.3e-37, 39.67% id in 305 aa, and to Bacteroides thetaiotaomicron UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase BT4207 SWALL:AAO79312 (EMBL:AE016944) (346 aa) fasta scores: E(): 2.1e-104, 79.19% id in 346 aa, and to Chlorobium tepidum UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD or CT1360 SWALL:LPXD_CHLTE (SWALL:Q8KCQ3) (353 aa) fasta scores: E(): 2.4e-41, 39.52% id in 339 aa; putative UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1024196 lpxD 3289227 lpxD Bacteroides fragilis NCTC 9343 putative UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_210524.1 1023156 R 272559 CDS YP_210525.1 60680381 3288808 complement(1024279..1025508) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron phosphohydrolase BT4208 SWALL:AAO79313 (EMBL:AE016944) (409 aa) fasta scores: E(): 3e-145, 91.93% id in 409 aa, and to Streptococcus mutans conserved hypothetical protein SMU.719C SWALL:Q8DV05 (EMBL:AE014915) (434 aa) fasta scores: E(): 1.7e-34, 31.41% id in 417 aa, and to Listeria innocua hypothetical protein Lin2710 SWALL:Q927S8 (EMBL:AL596173) (440 aa) fasta scores: E(): 8.2e-34, 30.93% id in 417 aa; hypothetical protein 1025508 3288808 BF9343_0792 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210525.1 1024279 R 272559 CDS YP_210526.1 60680382 3288837 complement(1025508..1026332) 1 NC_003228.3 Similar to Trypanosoma cruzi OMPdcase-oprtase Pyr6-5 SWALL:O76139 (EMBL:AB010285) (458 aa) fasta scores: E(): 5.2e-28, 38.46% id in 260 aa, and to Bacteroides thetaiotaomicron orotidine 5'-phosphate decarboxylase BT4209 SWALL:AAO79314 (EMBL:AE016944) (274 aa) fasta scores: E(): 1.4e-102, 93.43% id in 274 aa, and to Leptospira interrogans orotidine-5'-monophosphate decarboxylase PyrF or LB310 SWALL:Q8EXA4 (EMBL:AE011617) (275 aa) fasta scores: E(): 7.1e-37, 42.8% id in 271 aa; putative orotidine 5'-phosphate decarboxylase 1026332 3288837 BF9343_0793 Bacteroides fragilis NCTC 9343 putative orotidine 5'-phosphate decarboxylase YP_210526.1 1025508 R 272559 CDS YP_210527.1 60680383 3287743 complement(1026381..1027493) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri peptide chain release factor 1 SWALL:RF1_ECOLI (SWALL:P07011) (360 aa) fasta scores: E(): 1.4e-57, 47.64% id in 361 aa, and to Bacteroides thetaiotaomicron peptide chain release factor 1 PrfA or BT4210 SWALL:AAO79315 (EMBL:AE016944) (370 aa) fasta scores: E(): 5.4e-128, 95.13% id in 370 aa, and to Pseudomonas putida peptide chain release factor 1 PrfA or PP0733 SWALL:AAN66358 (EMBL:AE016776) (360 aa) fasta scores: E(): 8.1e-61, 49.58% id in 361 aa; putative peptide chain release factor 1 1027493 prfA 3287743 prfA Bacteroides fragilis NCTC 9343 putative peptide chain release factor 1 YP_210527.1 1026381 R 272559 CDS YP_210528.1 60680384 3288809 complement(1027557..1028723) 1 NC_003228.3 Similar to Bacillus subtilis phosphoribosylformylglycinamidine cyclo-ligase PurM or Ath SWALL:PUR5_BACSU (SWALL:P12043) (346 aa) fasta scores: E(): 0.0001, 25.15% id in 330 aa, and to Bacteroides thetaiotaomicron putative phosphoribosylformylglycinamidine cyclo-ligase BT4211 SWALL:AAO79316 (EMBL:AE016944) (388 aa) fasta scores: E(): 6.6e-143, 95.87% id in 388 aa, and to Methanococcus jannaschii probable phosphoribosylformylglycinamidine cyclo-ligase PurM or mj0203 SWALL:PUR5_METJA (SWALL:Q57656) (350 aa) fasta scores: E(): 1.8e-07, 31.13% id in 379 aa; possible phosphoribosylformylglycinamidine cyclo-ligase 1028723 3288809 BF9343_0795 Bacteroides fragilis NCTC 9343 possible phosphoribosylformylglycinamidine cyclo-ligase YP_210528.1 1027557 R 272559 CDS YP_210529.1 60680385 3288518 complement(1028938..1029171) 1 NC_003228.3 no significant database matches; hypothetical protein 1029171 3288518 BF9343_0796 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210529.1 1028938 R 272559 CDS YP_210530.1 60680386 3288693 complement(1029309..1029890) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4212 SWALL:AAO79317 (EMBL:AE016944) (193 aa) fasta scores: E(): 6.2e-58, 87.04% id in 193 aa, and to Pasteurella multocida hypothetical protein Pm0785 SWALL:Q9CMN2 (EMBL:AE006117) (193 aa) fasta scores: E(): 5.6e-35, 57.51% id in 193 aa, and to Pasteurella multocida p70 SWALL:Q8VPL2 (EMBL:AY035341) (193 aa) fasta scores: E(): 1.4e-34, 55.67% id in 194 aa; putative LemA family protein 1029890 3288693 BF9343_0797 Bacteroides fragilis NCTC 9343 putative LemA family protein YP_210530.1 1029309 R 272559 CDS YP_210531.1 60680387 3288532 complement(1029985..1030905) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4213 SWALL:AAO79318 (EMBL:AE016944) (300 aa) fasta scores: E(): 5.4e-71, 70.77% id in 308 aa, and to Xanthomonas axonopodis glycine rich protein XAC0839 SWALL:Q8PP49 (EMBL:AE011716) (286 aa) fasta scores: E(): 1.9e-13, 29.92% id in 274 aa, and to Xanthomonas campestris glycine rich protein XCC0784 SWALL:Q8PCF0 (EMBL:AE012178) (305 aa) fasta scores: E(): 2.5e-13, 27.98% id in 268 aa; hypothetical protein 1030905 3288532 BF9343_0798 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210531.1 1029985 R 272559 CDS YP_210532.1 60680388 3288539 complement(1030907..1031857) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4214 SWALL:Q8A007 (EMBL:AE016944) (290 aa) fasta scores: E(): 1.8e-103, 81.72% id in 290 aa, and to Lactobacillus plantarum cell surface hydrolase, membrane-bound LP_3393 SWALL:Q88SL7 (EMBL:AL935262) (312 aa) fasta scores: E(): 4.6e-44, 40.31% id in 315 aa, and to Enterococcus faecalis hypothetical protein ef1536 SWALL:Q834U6 (EMBL:AE016951) (309 aa) fasta scores: E(): 1.8e-41, 38.41% id in 315 aa. Possible alternative start site at codon 28; hypothetical protein 1031857 3288539 BF9343_0799 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210532.1 1030907 R 272559 CDS YP_210533.1 60680389 3288984 complement(1031858..1032601) 1 NC_003228.3 Similar to Staphylococcus epidermidis shikimate 5-dehydrogenase AroE or se1282 SWALL:Q8CP09 (EMBL:AE016748) (272 aa) fasta scores: E(): 5e-17, 29.96% id in 257 aa, and to Bacteroides thetaiotaomicron shikimate 5-dehydrogenase BT4215 SWALL:AAO79320 (EMBL:AE016944) (248 aa) fasta scores: E(): 3.9e-85, 88.3% id in 248 aa, and to Aquifex aeolicus shikimate 5-dehydrogenase AroE or AQ_901 SWALL:AROE_AQUAE (SWALL:O67049) (269 aa) fasta scores: E(): 6.3e-23, 38.76% id in 258 aa; putative shikimate 5-dehydrogenase 1032601 aroE 3288984 aroE Bacteroides fragilis NCTC 9343 putative shikimate 5-dehydrogenase YP_210533.1 1031858 R 272559 CDS YP_210534.1 60680390 3288134 complement(1032628..1033365) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ubiquinone/menaquinone biosynthesis methyltransferase UbiE or B3833 or Z5355 or ECS4763 or SF3911 or s3843 SWALL:UBIE_ECOLI (SWALL:P27851) (251 aa) fasta scores: E(): 9.6e-27, 35.49% id in 231 aa, and to Bacteroides thetaiotaomicron ubiquinone/menaquinone biosynthesis methyltransferase BT4216 SWALL:AAO79321 (EMBL:AE016944) (245 aa) fasta scores: E(): 3.9e-83, 86.93% id in 245 aa, and to Deinococcus radiodurans ubiquinone/menaquinone biosynthesis methyltransferase dr2405 SWALL:Q9RRT0 (EMBL:AE002071) (241 aa) fasta scores: E(): 1.5e-31, 41.07% id in 241 aa; putative ubiquinone/menaquinone biosynthesis methyltransferase 1033365 3288134 BF9343_0801 Bacteroides fragilis NCTC 9343 putative ubiquinone/menaquinone biosynthesis methyltransferase YP_210534.1 1032628 R 272559 CDS YP_210535.1 60680391 3288527 complement(1033487..1034431) 1 NC_003228.3 Similar to Vigna unguiculata succinoaminoimidazolecarboximide ribonucleotide synthetase Pur7 SWALL:Q8VZW9 (EMBL:AY063233) (402 aa) fasta scores: E(): 3.2e-43, 44.02% id in 318 aa, and to Bacteroides thetaiotaomicron phosphoribosylamidoimidazole-succinocarboxamide synthase BT4217 SWALL:AAO79322 (EMBL:AE016944) (314 aa) fasta scores: E(): 2.3e-116, 94.26% id in 314 aa, and to Caulobacter crescentus phosphoribosylaminoimidazole-succinocarboxamide synthase CC3242 SWALL:Q9A3G2 (EMBL:AE005988) (320 aa) fasta scores: E(): 7.8e-48, 46.77% id in 310 aa; putative succinoaminoimidazolecarboximide ribonucleotide (SAICAR) synthetase 1034431 3288527 BF9343_0802 Bacteroides fragilis NCTC 9343 putative succinoaminoimidazolecarboximide ribonucleotide (SAICAR) synthetase YP_210535.1 1033487 R 272559 CDS YP_210536.1 60680392 3288349 complement(1034451..1035464) 1 NC_003228.3 Similar to Bacillus subtilis PhoH-like protein PhoH SWALL:PHOL_BACSU (SWALL:P46343) (319 aa) fasta scores: E(): 1.6e-41, 48.27% id in 319 aa, and to Bacteroides thetaiotaomicron phosphate starvation-inducible protein, PhoH BT4218 SWALL:AAO79323 (EMBL:AE016944) (338 aa) fasta scores: E(): 2.3e-103, 96.37% id in 331 aa, and to Chlorobium tepidum PhoH family protein CT1259 SWALL:Q8KCZ8 (EMBL:AE012886) (329 aa) fasta scores: E(): 2e-47, 49.69% id in 326 aa; putative phosphate starvation-inducible PhoH-like protein 1035464 3288349 BF9343_0803 Bacteroides fragilis NCTC 9343 putative phosphate starvation-inducible PhoH-like protein YP_210536.1 1034451 R 272559 CDS YP_210537.1 60680393 3288508 1035629..1036309 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4219 SWALL:AAO79324 (EMBL:AE016944) (225 aa) fasta scores: E(): 1.5e-64, 74.89% id in 227 aa; hypothetical protein 1036309 3288508 BF9343_0804 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210537.1 1035629 D 272559 CDS YP_210538.1 60680394 3288546 complement(1036393..1038018) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron flotillin-like protein BT4220 SWALL:AAO79325 (EMBL:AE016944) (552 aa) fasta scores: E(): 2e-138, 94.6% id in 537 aa, and to Lactococcus lactis flotillin-like protein FloL or ll0739 SWALL:Q9CHJ2 (EMBL:AE006307) (503 aa) fasta scores: E(): 5.4e-19, 30.79% id in 526 aa, and to Bacillus subtilis hypothetical protein YuaG SWALL:YUAG_BACSU (SWALL:O32076) (509 aa) fasta scores: E(): 1.2e-15, 27.72% id in 541 aa; hypothetical protein 1038018 3288546 BF9343_0805 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210538.1 1036393 R 272559 CDS YP_210539.1 60680395 3288517 complement(1038043..1038540) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4221 SWALL:AAO79326 (EMBL:AE016944) (165 aa) fasta scores: E(): 5.5e-49, 73.93% id in 165 aa; putative transmembrane protein 1038540 3288517 BF9343_0806 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210539.1 1038043 R 272559 CDS YP_210540.1 60680396 3288660 1038695..1040482 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4251 SWALL:AAO79356 (EMBL:AE016944) (615 aa) fasta scores: E(): 5.4e-59, 36.46% id in 606 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3160 SWALL:AAO78266 (EMBL:AE016939) (568 aa) fasta scores: E(): 8.4e-40, 30.42% id in 562 aa; conserved hypothetical protein, possible ATP/GTP-binding site 1040482 3288660 BF9343_0807 Bacteroides fragilis NCTC 9343 conserved hypothetical protein, possible ATP/GTP-binding site YP_210540.1 1038695 D 272559 CDS YP_210541.1 60680397 3288689 1040514..1041668 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1579 SWALL:AAO76686 (EMBL:AE016932) (377 aa) fasta scores: E(): 1.6e-25, 34.88% id in 344 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0585 SWALL:AAO75692 (EMBL:AE016928) (169 aa) fasta scores: E(): 3.9e-24, 43.63% id in 165 aa; hypothetical protein 1041668 3288689 BF9343_0808 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210541.1 1040514 D 272559 CDS YP_210542.1 60680398 3285503 1041749..1042507 1 NC_003228.3 Similar to Escherichia coli tRNA pseudouridine synthase A TruA or HisT or AsuC or LeuK or B2318 SWALL:TRUA_ECOLI (SWALL:P07649) (270 aa) fasta scores: E(): 9.6e-24, 37.5% id in 248 aa, and to Bacteroides thetaiotaomicron tRNA pseudouridine synthase A BT4237 SWALL:AAO79342 (EMBL:AE016944) (269 aa) fasta scores: E(): 1.5e-82, 80.47% id in 251 aa, and to Thermoanaerobacter tengcongensis tRNA pseudouridine synthase A TruA or TTE2258 SWALL:TRUA_THETN (SWALL:Q8R7Y7) (240 aa) fasta scores: E(): 2.4e-28, 39.25% id in 242 aa; putative tRNA pseudouridine synthase A 1042507 truA 3285503 truA Bacteroides fragilis NCTC 9343 putative tRNA pseudouridine synthase A YP_210542.1 1041749 D 272559 CDS YP_210543.1 60680399 3288550 1042539..1043438 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative permease BT4238 SWALL:AAO79343 (EMBL:AE016944) (299 aa) fasta scores: E(): 7e-107, 87.62% id in 299 aa, and to Clostridium acetobutylicum predicted permease Cac1984 SWALL:Q97HM6 (EMBL:AE007702) (285 aa) fasta scores: E(): 4.7e-25, 34.57% id in 295 aa, and to Aquifex aeolicus hypothetical protein Aq_246 SWALL:O66609 (EMBL:AE000680) (279 aa) fasta scores: E(): 1.6e-10, 26.66% id in 255 aa; putative transmembrane protein 1043438 3288550 BF9343_0810 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210543.1 1042539 D 272559 CDS YP_210544.1 60680400 3288701 1043466..1044119 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4239 SWALL:AAO79344 (EMBL:AE016944) (216 aa) fasta scores: E(): 6.8e-50, 62.08% id in 211 aa; hypothetical protein 1044119 3288701 BF9343_0811 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210544.1 1043466 D 272559 CDS YP_210545.1 60680401 3288680 complement(1044100..1045185) 1 NC_003228.3 Similar to Prevotella sp. RS2 mucin desulfating desulfatase MdsC protein SWALL:Q9L5V9 (EMBL:AF248951) (362 aa) fasta scores: E(): 8.1e-92, 64.32% id in 356 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, with a phosphotransferase enzyme family domain BT4240 SWALL:AAO79345 (EMBL:AE016944) (363 aa) fasta scores: E(): 1.4e-133, 92.77% id in 360 aa, and to Clostridium perfringens hypothetical protein CPE1200 SWALL:Q8XL42 (EMBL:AP003189) (368 aa) fasta scores: E(): 5e-49, 42.38% id in 361 aa; putative desulfatase 1045185 3288680 BF9343_0812 Bacteroides fragilis NCTC 9343 putative desulfatase YP_210545.1 1044100 R 272559 CDS YP_210546.1 60680402 3288686 complement(1045207..1048506) 1 NC_003228.3 Similar to Escherichia coli beta-galactosidase LacZ or B0344 SWALL:BGAL_ECOLI (SWALL:P00722) (1023 aa) fasta scores: E(): 1.5e-71, 32.04% id in 1005 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT4241 SWALL:Q89ZY0 (EMBL:AE016944) (1103 aa) fasta scores: E(): 0, 78.08% id in 1086 aa, and to Bacillus megaterium beta-galactosidase BgaM SWALL:BGAL_BACME (SWALL:O52847) (1034 aa) fasta scores: E(): 1.4e-113, 36.68% id in 1093 aa; putative beta-galactosidase 1048506 3288686 BF9343_0813 Bacteroides fragilis NCTC 9343 putative beta-galactosidase YP_210546.1 1045207 R 272559 CDS YP_210547.1 60680403 3288695 complement(1048568..1049458) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transporter BT4242 SWALL:AAO79347 (EMBL:AE016944) (296 aa) fasta scores: E(): 1.6e-101, 84.12% id in 296 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3127 SWALL:AAO78233 (EMBL:AE016939) (305 aa) fasta scores: E(): 2.4e-44, 54.75% id in 305 aa, and to Thermotoga maritima hypothetical protein Tm0177 TM0177 SWALL:Q9WY21 (EMBL:AE001702) (283 aa) fasta scores: E(): 5.9e-30, 33.68% id in 282 aa; putative transmembrane protein 1049458 3288695 BF9343_0814 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210547.1 1048568 R 272559 CDS YP_210548.1 60680404 3288703 complement(1049570..1050964) 1 NC_003228.3 Similar to Shewanella oneidensis oxidoreductase, GFO/IDH/MOCA family so3120 SWALL:Q8ECL7 (EMBL:AE015749) (459 aa) fasta scores: E(): 2.3e-67, 41.81% id in 452 aa, and to Bacteroides thetaiotaomicron putative oxidoreductase BT4243 SWALL:AAO79348 (EMBL:AE016944) (467 aa) fasta scores: E(): 2.9e-166, 83.51% id in 467 aa, and to Bacteroides thetaiotaomicron putative oxidoreductase BT4252 SWALL:AAO79357 (EMBL:AE016944) (419 aa) fasta scores: E(): 1.8e-68, 48.48% id in 429 aa; putative GFO/IDH/MOCA family oxidoreductase 1050964 3288703 BF9343_0815 Bacteroides fragilis NCTC 9343 putative GFO/IDH/MOCA family oxidoreductase YP_210548.1 1049570 R 272559 CDS YP_210549.1 60680405 3288708 complement(1051170..1051418) 1 NC_003228.3 no significant database matches; hypothetical protein 1051418 3288708 BF9343_0816 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210549.1 1051170 R 272559 CDS YP_210550.1 60680406 3288628 complement(1052070..1054337) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3155 SWALL:AAO78261 (EMBL:AE016939) (808 aa) fasta scores: E(): 5.3e-25, 23.03% id in 738 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1777 SWALL:AAO76884 (EMBL:AE016933) (1019 aa) fasta scores: E(): 2.9e-23, 27.83% id in 467 aa, and to Arabidopsis thaliana at4g34260/f10m10_30 SWALL:Q8L7W8 (EMBL:AY125494) (843 aa) fasta scores: E(): 7.9e-23, 23.21% id in 797 aa; hypothetical protein 1054337 3288628 BF9343_0817 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210550.1 1052070 R 272559 CDS YP_210551.1 60680407 3288674 complement(1054461..1057232) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron beta-glucuronidase BT4151 SWALL:AAO79256 (EMBL:AE016944) (958 aa) fasta scores: E(): 2.8e-91, 34.97% id in 955 aa, and to Bacteroides fragilis putative beta-galactosidase BgaB SWALL:BAC56907 (EMBL:AB102772) (928 aa) fasta scores: E(): 3.1e-45, 39.4% id in 916 aa, and to Bacteroides thetaiotaomicron beta-glucuronidase BT3292 SWALL:AAO78398 (EMBL:AE016939) (591 aa) fasta scores: E(): 4.6e-16, 24.24% id in 528 aa; putative beta-glucuronidase 1057232 3288674 BF9343_0818 Bacteroides fragilis NCTC 9343 putative beta-glucuronidase YP_210551.1 1054461 R 272559 CDS YP_210552.1 60680408 3288678 complement(1057229..1060531) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TPR-domain containing protein BT4398 SWALL:AAO79503 (EMBL:AE016945) (1093 aa) fasta scores: E(): 0, 61.95% id in 1096 aa, and to Escherichia coli O6 hypothetical protein YphG or C3071 SWALL:Q8FF32 (EMBL:AE016764) (1124 aa) fasta scores: E(): 4.9e-127, 41.68% id in 1070 aa, and to Escherichia coli hypothetical protein YphG or B2549 SWALL:YPHG_ECOLI (SWALL:P76585) (1124 aa) fasta scores: E(): 1.8e-126, 41.36% id in 1071 aa; putative TPR-domain protein 1060531 3288678 BF9343_0819 Bacteroides fragilis NCTC 9343 putative TPR-domain protein YP_210552.1 1057229 R 272559 CDS YP_210553.1 60680409 3288413 complement(1060545..1061924) 1 NC_003228.3 Similar to Bacillus subtilis arabinose-proton symporter AraE SWALL:ARAE_BACSU (SWALL:P96710) (464 aa) fasta scores: E(): 5.4e-58, 39.08% id in 458 aa, and to Bacteroides thetaiotaomicron xylose/H+ symporter BT4397 SWALL:AAO79502 (EMBL:AE016945) (460 aa) fasta scores: E(): 2.8e-110, 59.17% id in 463 aa, and to Bacteroides thetaiotaomicron arabinose-proton symporter BT0436 SWALL:AAO75543 (EMBL:AE016927) (468 aa) fasta scores: E(): 4.9e-61, 37.68% id in 467 aa; putative sugar-proton symporter 1061924 3288413 BF9343_0820 Bacteroides fragilis NCTC 9343 putative sugar-proton symporter YP_210553.1 1060545 R 272559 CDS YP_210554.1 60680410 3288786 1062062..1062958 1 NC_003228.3 Similar to Pseudomonas aeruginosa MmsAB operon regulatory protein MmsR or pa3571 SWALL:MMSR_PSEAE (SWALL:P28809) (307 aa) fasta scores: E(): 3.6e-18, 33.54% id in 307 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT4396 SWALL:AAO79501 (EMBL:AE016945) (295 aa) fasta scores: E(): 5.6e-76, 61.4% id in 298 aa, and to Pediococcus pentosaceus raffinose operon transcriptional regulatory protein RafR SWALL:RAFR_PEDPE (SWALL:P43465) (277 aa) fasta scores: E(): 6.4e-14, 28.62% id in 248 aa; putative AraC transcriptional regulatory protein 1062958 3288786 BF9343_0821 Bacteroides fragilis NCTC 9343 putative AraC transcriptional regulatory protein YP_210554.1 1062062 D 272559 CDS YP_210555.1 60680411 3288391 complement(1063113..1065764) 1 NC_003228.3 Similar to Agrobacterium tumefaciens beta-glucosidase Cbg-1 SWALL:BGLS_AGRTU (SWALL:P27034) (818 aa) fasta scores: E(): 2e-46, 34.74% id in 872 aa, and to Streptomyces coelicolor putative beta-glucosidase sco6597 or sc8a6.18 SWALL:O87852 (EMBL:AL939128) (859 aa) fasta scores: E(): 4.9e-58, 29.72% id in 895 aa, and to Pseudomonas syringae beta-glucosidase PSPTO3318 SWALL:Q87ZV4 (EMBL:AE016867) (913 aa) fasta scores: E(): 5.7e-50, 34.38% id in 884 aa. Possible alternative start site at codon 46; putative beta-glucosidase 1065764 3288391 BF9343_0822 Bacteroides fragilis NCTC 9343 putative beta-glucosidase YP_210555.1 1063113 R 272559 CDS YP_210556.1 60680412 3288347 complement(1065871..1067307) 1 NC_003228.3 no significant database matches; putative cytochrome c binding protein 1067307 3288347 BF9343_0823 Bacteroides fragilis NCTC 9343 putative cytochrome c binding protein YP_210556.1 1065871 R 272559 CDS YP_210557.1 60680413 3288425 complement(1067319..1068848) 1 NC_003228.3 no significant database matches; putative transmembrane protein 1068848 3288425 BF9343_0824 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210557.1 1067319 R 272559 CDS YP_210558.1 60680414 3288479 complement(1068866..1070503) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2195 SWALL:AAO77302 (EMBL:AE016935) (580 aa) fasta scores: E(): 5.4e-20, 30.17% id in 580 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4089 SWALL:AAO79194 (EMBL:AE016943) (598 aa) fasta scores: E(): 5e-19, 28.89% id in 623 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0141 SWALL:AAO75248 (EMBL:AE016926) (579 aa) fasta scores: E(): 4.7e-16, 29.62% id in 611 aa; putative outer membrane protein 1070503 3288479 BF9343_0825 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210558.1 1068866 R 272559 CDS YP_210559.1 60680415 3288480 complement(1070525..1073572) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2362 SWALL:Q8A580 (EMBL:AE016935) (1028 aa) fasta scores: E(): 4.2e-84, 30.02% id in 1039 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3569 SWALL:Q8A1T9 (EMBL:AE016941) (1021 aa) fasta scores: E(): 1.4e-75, 30.71% id in 1042 aa; hypothetical protein 1073572 3288480 BF9343_0826 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210559.1 1070525 R 272559 CDS YP_210560.1 60680416 3285098 complement(1074153..1075913) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2893 SWALL:AAO77999 (EMBL:AE016937) (624 aa) fasta scores: E(): 3e-13, 25.17% id in 564 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0866 SWALL:AAO75973 (EMBL:AE016929) (632 aa) fasta scores: E(): 2.8e-12, 23.54% id in 654 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4633 SWALL:AAO79738 (EMBL:AE016946) (627 aa) fasta scores: E(): 7.9e-12, 23.91% id in 577 aa; hypothetical protein 1075913 3285098 BF9343_0827 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210560.1 1074153 R 272559 CDS YP_210561.1 60680417 3288325 complement(1075942..1079352) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 2e-42, 30.08% id in 1180 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2461 SWALL:AAO77568 (EMBL:AE016936) (1134 aa) fasta scores: E(): 8.9e-112, 33.73% id in 1174 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2196 SWALL:AAO77303 (EMBL:AE016935) (1120 aa) fasta scores: E(): 2e-105, 32.13% id in 1164 aa; putative outer membrane protein 1079352 3288325 BF9343_0828 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210561.1 1075942 R 272559 CDS YP_210562.1 60680418 3288502 complement(1079643..1081409) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2365 SWALL:AAO77472 (EMBL:AE016935) (497 aa) fasta scores: E(): 5e-08, 28.15% id in 611 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1553 SWALL:AAO76660 (EMBL:AE016932) (442 aa) fasta scores: E(): 6e-08, 26.3% id in 327 aa; possible outer membrane protein 1081409 3288502 BF9343_0829 Bacteroides fragilis NCTC 9343 possible outer membrane protein YP_210562.1 1079643 R 272559 CDS YP_210563.1 60680419 3288835 complement(1081423..1084734) 1 NC_003228.3 Similar to Bacteroides Caccae TonB-linked outer membrane protein OmpW SWALL:Q93FV1 (EMBL:AF305878) (947 aa) fasta scores: E(): 1.2e-33, 27.04% id in 991 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3090 SWALL:AAO78196 (EMBL:AE016938) (999 aa) fasta scores: E(): 3.1e-80, 30.75% id in 1047 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0206 SWALL:AAO75313 (EMBL:AE016926) (980 aa) fasta scores: E(): 2.3e-55, 29.43% id in 1009 aa; putative TonB-linked outer membrane protein 1084734 3288835 BF9343_0830 Bacteroides fragilis NCTC 9343 putative TonB-linked outer membrane protein YP_210563.1 1081423 R 272559 CDS YP_210564.1 60680420 3288736 1085650..1086198 1 NC_003228.3 Similar to Bacteroides fragilis fragilis regulatory region RNA polymerase ECF-type sigma factor RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 7.7e-19, 41.11% id in 180 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4250 SWALL:Q89ZX1 (EMBL:AE016944) (181 aa) fasta scores: E(): 4.9e-34, 54.44% id in 180 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3010 SWALL:Q8A3E4 (EMBL:AE016938) (191 aa) fasta scores: E(): 4.3e-30, 51.59% id in 188 aa; putative RNA polymerase ECF-type sigma factor 1086198 3288736 BF9343_0831 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210564.1 1085650 D 272559 CDS YP_210565.1 60680421 3288519 1086324..1087310 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 3.8e-19, 28.27% id in 336 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT1618 SWALL:AAO76725 (EMBL:AE016932) (335 aa) fasta scores: E(): 2.7e-21, 32.5% id in 320 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT0965 SWALL:AAO76072 (EMBL:AE016929) (324 aa) fasta scores: E(): 1.3e-20, 30.86% id in 324 aa; putative anti-sigma factor 1087310 3288519 BF9343_0832 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210565.1 1086324 D 272559 CDS YP_210566.1 60680422 3288573 1087602..1090946 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2196 SWALL:Q8A5P2 (EMBL:AE016935) (1120 aa) fasta scores: E(): 1.6e-82, 31.89% id in 1157 aa, and to Bacteroides fragilis FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 6.4e-34, 29.94% id in 1182 aa; hypothetical protein 1090946 3288573 BF9343_0833 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210566.1 1087602 D 272559 CDS YP_210567.1 60680423 3288587 1090965..1092749 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0866 SWALL:AAO75973 (EMBL:AE016929) (632 aa) fasta scores: E(): 1.8e-12, 25.38% id in 658 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4633 SWALL:AAO79738 (EMBL:AE016946) (627 aa) fasta scores: E(): 8.8e-12, 25.49% id in 612 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2893 SWALL:AAO77999 (EMBL:AE016937) (624 aa) fasta scores: E(): 4e-09, 28.24% id in 524 aa; possible outer membrane protein 1092749 3288587 BF9343_0834 Bacteroides fragilis NCTC 9343 possible outer membrane protein YP_210567.1 1090965 D 272559 CDS YP_210568.1 60680424 3288482 1093409..1095169 1 NC_003228.3 no significant database matches; hypothetical protein 1095169 3288482 BF9343_0835 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210568.1 1093409 D 272559 CDS YP_210569.1 60680425 3288533 complement(1095266..1096543) 1 NC_003228.3 Similar to Shewanella oneidensis oxidoreductase, GFO/IDH/MOCA family so3120 SWALL:Q8ECL7 (EMBL:AE015749) (459 aa) fasta scores: E(): 1.1e-71, 44.97% id in 418 aa, and to Bacteroides thetaiotaomicron putative oxidoreductase BT4252 SWALL:AAO79357 (EMBL:AE016944) (419 aa) fasta scores: E(): 4.9e-144, 79.41% id in 413 aa, and to Bacteroides thetaiotaomicron putative oxidoreductase BT4243 SWALL:AAO79348 (EMBL:AE016944) (467 aa) fasta scores: E(): 2.6e-72, 49.3% id in 434 aa; putative GFO/IDH/MOCA family oxidoreductase 1096543 3288533 BF9343_0836 Bacteroides fragilis NCTC 9343 putative GFO/IDH/MOCA family oxidoreductase YP_210569.1 1095266 R 272559 CDS YP_210570.1 60680426 3289340 complement(1096844..1097338) 1 NC_003228.3 Similar to Bacillus amyloliquefaciens 6,7-dimethyl-8-ribityllumazine synthase RibH SWALL:RISB_BACAM (SWALL:Q44681) (154 aa) fasta scores: E(): 6.9e-22, 48.17% id in 137 aa, and to Bacteroides thetaiotaomicron 6,7-dimethyl-8-ribityllumazine synthase BT4253 SWALL:Q89ZW8 (EMBL:AE016944) (143 aa) fasta scores: E(): 6.7e-50, 90.9% id in 143 aa, and to Anopheles gambiae str. PEST ebip293 SWALL:EAA02623 (EMBL:AAAB01005976) (146 aa) fasta scores: E(): 2.2e-26, 52.74% id in 146 aa. Possible alternative start site at codon 22; putative 6,7-dimethyl-8-ribityllumazine synthase 1097338 ribH 3289340 ribH Bacteroides fragilis NCTC 9343 putative 6,7-dimethyl-8-ribityllumazine synthase YP_210570.1 1096844 R 272559 CDS YP_210571.1 60680427 3288562 complement(1097424..1098107) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4254 SWALL:AAO79359 (EMBL:AE016944) (227 aa) fasta scores: E(): 4.4e-66, 81.93% id in 227 aa, and to Chlorobium tepidum hypothetical protein CT1812 SWALL:Q8KBH5 (EMBL:AE012933) (247 aa) fasta scores: E(): 5.1e-08, 29.32% id in 208 aa; hypothetical protein 1098107 3288562 BF9343_0838 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210571.1 1097424 R 272559 CDS YP_210572.1 60680428 3288556 1098268..1099380 1 NC_003228.3 Similar to Lactococcus lactis DNA replication and repair protein RecF SWALL:RECF_LACLC (SWALL:P50925) (357 aa) fasta scores: E(): 3.3e-29, 30.32% id in 366 aa, and to Bacteroides thetaiotaomicron DNA replication and repair protein RecF, ABC family ATPase BT4255 SWALL:AAO79360 (EMBL:AE016944) (369 aa) fasta scores: E(): 6.1e-130, 92.87% id in 365 aa, and to Leptospira interrogans recombination protein RecF SWALL:Q8GQD4 (EMBL:AF434658) (365 aa) fasta scores: E(): 2.5e-35, 33.69% id in 368 aa; putative DNA replication and repair protein 1099380 3288556 BF9343_0839 Bacteroides fragilis NCTC 9343 putative DNA replication and repair protein YP_210572.1 1098268 D 272559 CDS YP_210573.1 60680429 3288583 1099377..1099667 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4256 SWALL:AAO79361 (EMBL:AE016944) (95 aa) fasta scores: E(): 7.3e-30, 86.45% id in 96 aa; hypothetical protein 1099667 3288583 BF9343_0840 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210573.1 1099377 D 272559 CDS YP_210574.1 60680430 3288722 complement(1099790..1100578) 1 NC_003228.3 Similar to Bacillus subtilis histidinol-phosphatase HisK or HisJ SWALL:HIS9_BACSU (SWALL:O34411) (268 aa) fasta scores: E(): 4.2e-06, 25.68% id in 257 aa, and to Bacteroides thetaiotaomicron putative histidinol-phosphatase BT4257 SWALL:AAO79362 (EMBL:AE016944) (263 aa) fasta scores: E(): 2e-82, 75% id in 260 aa, and to Clostridium perfringens probable histidinol phosphatase HisB or CPE0972 SWALL:Q8XLR9 (EMBL:AP003188) (261 aa) fasta scores: E(): 8e-28, 37.08% id in 240 aa; putative histidinol-phosphatase 1100578 3288722 BF9343_0841 Bacteroides fragilis NCTC 9343 putative histidinol-phosphatase YP_210574.1 1099790 R 272559 CDS YP_210575.1 60680431 3288332 complement(1100575..1101030) 1 NC_003228.3 Similar to Leptospira interrogans 5-formyltetrahydrofolate cyclo-ligase La1247 SWALL:Q8F6Q4 (EMBL:AE011306) (176 aa) fasta scores: E(): 4.9e-08, 28.94% id in 152 aa, and to Bacteroides thetaiotaomicron putative 5-formyltetrahydrofolate cyclo-ligase BT4258 SWALL:AAO79363 (EMBL:AE016944) (196 aa) fasta scores: E(): 1.2e-40, 70.47% id in 149 aa, and to Aquifex aeolicus hypothetical protein Aq_1731 SWALL:O67621 (EMBL:AE000753) (186 aa) fasta scores: E(): 8e-20, 39.73% id in 151 aa; putative 5-formyltetrahydrofolate cyclo-ligase 1101030 3288332 BF9343_0842 Bacteroides fragilis NCTC 9343 putative 5-formyltetrahydrofolate cyclo-ligase YP_210575.1 1100575 R 272559 CDS YP_210576.1 60680432 3288818 complement(1101035..1102762) 1 NC_003228.3 Similar to Bartonella quintana carboxy-terminal protease CtpA SWALL:Q9ZF67 (EMBL:AF110497) (441 aa) fasta scores: E(): 8.4e-31, 32.21% id in 447 aa, and to Bacteroides thetaiotaomicron carboxy-terminal processing protease precursor BT4259 SWALL:AAO79364 (EMBL:AE016944) (582 aa) fasta scores: E(): 5.6e-181, 84% id in 569 aa, and to Bacteroides thetaiotaomicron carboxy-terminal processing protease precursor BT3035 SWALL:AAO78141 (EMBL:AE016938) (529 aa) fasta scores: E(): 4.5e-76, 44.62% id in 493 aa; putative carboxy-terminal protease 1102762 3288818 BF9343_0843 Bacteroides fragilis NCTC 9343 putative carboxy-terminal protease YP_210576.1 1101035 R 272559 CDS YP_210577.1 60680433 3288343 complement(1102840..1103277) 1 NC_003228.3 Similar to Bacillus subtilis competence ComE operon protein 2 ComEB or ComE2 SWALL:CME2_BACSU (SWALL:P32393) (189 aa) fasta scores: E(): 2.4e-13, 38.4% id in 138 aa, and to Bacteroides thetaiotaomicron deoxycytidylate deaminase BT4260 SWALL:AAO79365 (EMBL:AE016944) (149 aa) fasta scores: E(): 5.9e-51, 90.27% id in 144 aa, and to Staphylococcus aureus late competence operon required for DNA binding and uptake ComEB or sav1589 or sa1417 or mw1540 SWALL:Q99TR0 (EMBL:AP003362) (153 aa) fasta scores: E(): 4.8e-15, 43.07% id in 130 aa; putative deoxycytidylate deaminase 1103277 3288343 BF9343_0844 Bacteroides fragilis NCTC 9343 putative deoxycytidylate deaminase YP_210577.1 1102840 R 272559 CDS YP_210578.1 60680434 3288538 complement(1103289..1103798) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4261 SWALL:AAO79366 (EMBL:AE016944) (169 aa) fasta scores: E(): 1.3e-28, 51.23% id in 162 aa; hypothetical protein 1103798 3288538 BF9343_0845 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210578.1 1103289 R 272559 CDS YP_210579.1 60680435 3285257 complement(1103805..1105919) 1 NC_003228.3 Similar to Escherichia coli peptidyl-dipeptidase Dcp or B1538 SWALL:DCP_ECOLI (SWALL:P24171) (680 aa) fasta scores: E(): 3.7e-91, 38.91% id in 681 aa, and to Bacteroides thetaiotaomicron peptidyl-dipeptidase BT4262 SWALL:AAO79367 (EMBL:AE016944) (689 aa) fasta scores: E(): 1.1e-217, 79.44% id in 686 aa, and to Bacteroides thetaiotaomicron peptidyl-dipeptidase BT2834 SWALL:AAO77940 (EMBL:AE016937) (694 aa) fasta scores: E(): 7.9e-119, 47.05% id in 678 aa; putative peptidyl-dipeptidase 1105919 dcp 3285257 dcp Bacteroides fragilis NCTC 9343 putative peptidyl-dipeptidase YP_210579.1 1103805 R 272559 CDS YP_210580.1 60680436 3286723 complement(1106086..1107087) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis glyceraldehyde 3-phosphate dehydrogenase Gap SWALL:G3P_BACFR (SWALL:Q59199) (299 aa) fasta scores: E(): 6.5e-108, 99.66% id in 299 aa, and to Ralstonia solanacearum glyceraldehyde 3-phosphate dehydrogenase GapA or Gap or RSC2749 or RS00105 SWALL:G3P_RALSO (SWALL:P52694) (332 aa) fasta scores: E(): 1.6e-95, 79.09% id in 330 aa, and to Xanthomonas axonopodis glyceraldehyde-3-phosphate dehydrogenase GapA or XAC3352 SWALL:Q8PHA7 (EMBL:AE011981) (333 aa) fasta scores: E(): 1.6e-93, 76.97% id in 330 aa; putative glyceraldehyde 3-phosphate dehydrogenase 1107087 gap 3286723 gap Bacteroides fragilis NCTC 9343 putative glyceraldehyde 3-phosphate dehydrogenase YP_210580.1 1106086 R 272559 CDS YP_210581.1 60680437 3289233 1107227..1107667 1 NC_003228.3 Similar to Salmonella typhimurium, and Salmonella typhi large-conductance mechanosensitive channel MscL or STM3410 or STY4387 or t4094 SWALL:MSCL_SALTY (SWALL:P39446) (137 aa) fasta scores: E(): 2.6e-22, 60.99% id in 141 aa, and to Bacteroides thetaiotaomicron putative ion channel BT4264 SWALL:AAO79369 (EMBL:AE016944) (148 aa) fasta scores: E(): 9.9e-44, 86.48% id in 148 aa, and to Yersinia pestis large-conductance mechanosensitive channel MscL or YPO0238 or Y4019 SWALL:MSCL_YERPE (SWALL:Q8ZJ83) (137 aa) fasta scores: E(): 8.2e-26, 59.85% id in 142 aa; putative large-conductance mechanosensitive channel 1107667 mscL 3289233 mscL Bacteroides fragilis NCTC 9343 putative large-conductance mechanosensitive channel YP_210581.1 1107227 D 272559 CDS YP_210582.1 60680438 3289192 1107698..1109221 1 NC_003228.3 Similar to Lactococcus lactis GMP synthase [glutamine-hydrolyzing] GuaA SWALL:GUAA_LACLC (SWALL:Q9Z6H4) (513 aa) fasta scores: E(): 1.5e-96, 51.77% id in 508 aa, and to Bacteroides thetaiotaomicron GMP synthase BT4265 SWALL:AAO79370 (EMBL:AE016944) (507 aa) fasta scores: E(): 3.3e-188, 95.85% id in 507 aa, and to Fusobacterium nucleatum GMP synthase [glutamine-hydrolyzing] GuaA or FN1444 SWALL:GUAA_FUSNN (SWALL:Q8RDR4) (512 aa) fasta scores: E(): 7e-106, 55.68% id in 510 aa; putative GMP synthase [glutamine-hydrolyzing] 1109221 guaA 3289192 guaA Bacteroides fragilis NCTC 9343 putative GMP synthase [glutamine-hydrolyzing] YP_210582.1 1107698 D 272559 CDS YP_210583.1 60680439 3288732 complement(1109524..1109643) 1 NC_003228.3 no significant database matches; hypothetical protein 1109643 3288732 BF9343_0850 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210583.1 1109524 R 272559 CDS YP_210584.1 60680440 3288478 complement(1109826..1111850) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2806 SWALL:AAO77912 (EMBL:AE016937) (666 aa) fasta scores: E(): 7.2e-77, 40.75% id in 692 aa, and C-terminus is similar to previously sequenced Bacteroides fragilis (fragment) hypothetical protein SWALL:BAC56894 (EMBL:AB102772) (218 aa) fasta scores: E(): 3.8e-42, 54.58% id in 218 aa, and entire CDS is similar to Bacteroides thetaiotaomicron hypothetical protein BT4358 SWALL:AAO79463 (EMBL:AE016945) (628 aa) fasta scores: E(): 5.2e-15, 24.33% id in 674 aa; hypothetical protein 1111850 3288478 BF9343_0851 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210584.1 1109826 R 272559 CDS YP_210585.1 60680441 3288339 complement(1111866..1115135) 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 4.7e-35, 27.39% id in 1077 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 8.8e-192, 48.2% id in 1060 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4357 SWALL:AAO79462 (EMBL:AE016945) (1178 aa) fasta scores: E(): 7e-94, 36.63% id in 1081 aa; putative outer membrane receptor protein 1115135 3288339 BF9343_0852 Bacteroides fragilis NCTC 9343 putative outer membrane receptor protein YP_210585.1 1111866 R 272559 CDS YP_210586.1 60680442 3288638 complement(1116065..1118107) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2806 SWALL:AAO77912 (EMBL:AE016937) (666 aa) fasta scores: E(): 1.1e-94, 41.75% id in 685 aa, and C-terminus is similar to previously sequenced Bacteroides fragilis (fragment) hypothetical protein SWALL:BAC56894 (EMBL:AB102772) (218 aa) fasta scores: E(): 7.7e-50, 60.71% id in 224 aa, and entire CDS is similar to Bacteroides thetaiotaomicron hypothetical protein BT4685 SWALL:AAO79790 (EMBL:AE016946) (171 aa) fasta scores: E(): 9.4e-14, 39.28% id in 140 aa; hypothetical protein 1118107 3288638 BF9343_0854 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210586.1 1116065 R 272559 CDS YP_210587.1 60680443 3288610 complement(1118121..1121387) 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 1.2e-38, 28.96% id in 1084 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 3.4e-182, 46.39% id in 1054 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1619 SWALL:AAO76726 (EMBL:AE016932) (1150 aa) fasta scores: E(): 1.8e-110, 36.1% id in 1094 aa; putative outer membrane receptor protein 1121387 3288610 BF9343_0855 Bacteroides fragilis NCTC 9343 putative outer membrane receptor protein YP_210587.1 1118121 R 272559 CDS YP_210588.1 60680444 3288337 1122305..1123162 1 NC_003228.3 Similar to Pseudomonas aeruginosa enoyl-[acyl-carrier-protein] reductase [NADH] FabI or pa1806 SWALL:FABI_PSEAE (SWALL:Q9ZFE4) (265 aa) fasta scores: E(): 7.2e-14, 29.85% id in 268 aa, and to Bacteroides thetaiotaomicron enoyl-[acyl-carrier-protein] reductase BT4188 SWALL:Q8A033 (EMBL:AE016944) (285 aa) fasta scores: E(): 8.3e-101, 91.22% id in 285 aa, and to Chlorobium tepidum enoyl-[acyl-carrier-protein] reductase [NADH] FabI or CT0350 SWALL:Q8KFH6 (EMBL:AE012813) (293 aa) fasta scores: E(): 1.7e-52, 51.28% id in 273 aa; putative enoyl-[acyl-carrier-protein] reductase [NADH] 1123162 3288337 BF9343_0856 Bacteroides fragilis NCTC 9343 putative enoyl-[acyl-carrier-protein] reductase [NADH] YP_210588.1 1122305 D 272559 CDS YP_210589.1 60680445 3288710 1123167..1124180 1 NC_003228.3 Similar to Cytophaga johnsonae gliding motility protein GldB SWALL:Q9WWY2 (EMBL:AF158372) (318 aa) fasta scores: E(): 1.8e-19, 26.08% id in 345 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4189 SWALL:AAO79294 (EMBL:AE016944) (335 aa) fasta scores: E(): 1.2e-80, 61.19% id in 335 aa; hypothetical protein 1124180 3288710 BF9343_0857 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210589.1 1123167 D 272559 CDS YP_210590.1 60680446 3288704 1124207..1124911 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative S-adenosylmethionine-dependent methytransferase BT4190 SWALL:AAO79295 (EMBL:AE016944) (234 aa) fasta scores: E(): 3.8e-80, 87.6% id in 234 aa, and to Neisseria meningitidis hypothetical protein NMA0547 SWALL:Q9JW49 (EMBL:AL162753) (241 aa) fasta scores: E(): 1.4e-36, 46.38% id in 235 aa, and to Neisseria meningitidis hypothetical protein NMB1908 SWALL:Q9JXS3 (EMBL:AE002540) (241 aa) fasta scores: E(): 2.5e-36, 46.38% id in 235 aa. CDS overlaps 29 nt with adjacent CDS; hypothetical protein 1124911 3288704 BF9343_0858 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210590.1 1124207 D 272559 CDS YP_210591.1 60680447 3288563 complement(1124877..1125995) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4191 SWALL:AAO79296 (EMBL:AE016944) (373 aa) fasta scores: E(): 1.6e-113, 72.11% id in 373 aa, and C-terminus is similar to Bacteroides thetaiotaomicron putative NTP pyrophosphohydrolase BT3972 SWALL:AAO79077 (EMBL:AE016943) (180 aa) fasta scores: E(): 1.3e-07, 26.99% id in 163 aa. CDS overlaps 29 nt with adjacent CDS; putative transmembrane protein 1125995 3288563 BF9343_0859 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210591.1 1124877 R 272559 CDS YP_210592.1 60680448 3288526 complement(1126060..1126926) 1 NC_003228.3 Similar to Leptospira interrogans lipoic acid synthetase La2292 SWALL:Q8F3V7 (EMBL:AE011399) (301 aa) fasta scores: E(): 5.9e-48, 45.74% id in 282 aa, and to Bacteroides thetaiotaomicron lipoic acid synthetase BT4192 SWALL:AAO79297 (EMBL:AE016944) (282 aa) fasta scores: E(): 1.1e-89, 83.87% id in 279 aa, and to Thermoanaerobacter tengcongensis lipoic acid synthetase LipA or TTE1672 SWALL:LIPA_THETN (SWALL:Q8R9E1) (284 aa) fasta scores: E(): 7.5e-53, 53.26% id in 276 aa; putative lipoic acid synthetase 1126926 3288526 BF9343_0860 Bacteroides fragilis NCTC 9343 putative lipoic acid synthetase YP_210592.1 1126060 R 272559 CDS YP_210593.1 60680449 3288552 complement(1127053..1129263) 1 NC_003228.3 Similar to Porphyromonas gingivalis dipeptidyl peptidase DPP IV SWALL:O66223 (EMBL:AB008194) (723 aa) fasta scores: E(): 1.6e-124, 51.01% id in 741 aa, and to Bacteroides thetaiotaomicron dipeptidyl peptidase IV BT4193 SWALL:AAO79298 (EMBL:AE016944) (736 aa) fasta scores: E(): 0, 80.57% id in 736 aa, and to Porphyromonas gingivalis dipeptidyl peptidase DPP IV SWALL:O31048 (EMBL:AF026511) (723 aa) fasta scores: E(): 1.8e-123, 50.47% id in 741 aa; putative dipeptidyl peptidase 1129263 3288552 BF9343_0861 Bacteroides fragilis NCTC 9343 putative dipeptidyl peptidase YP_210593.1 1127053 R 272559 CDS YP_210594.1 60680450 3288625 1129701..1130429 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4117 SWALL:AAO79222 (EMBL:AE016943) (264 aa) fasta scores: E(): 2.2e-26, 48.28% id in 263 aa, and to Streptococcus pneumoniae hypothetical protein Sp1914 SWALL:Q97NU8 (EMBL:AE007482) (224 aa) fasta scores: E(): 4.7e-06, 24.24% id in 231 aa, and to Streptococcus pneumoniae hypothetical protein spr1730 SWALL:Q8CYB8 (EMBL:AE008538) (224 aa) fasta scores: E(): 8.6e-06, 24.24% id in 231 aa; putative transmembrane protein 1130429 3288625 BF9343_0862 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210594.1 1129701 D 272559 CDS YP_210595.1 60680451 3288346 1130439..1131281 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative two-component system response regulator, no kinase domain BT4118 SWALL:AAO79223 (EMBL:AE016943) (270 aa) fasta scores: E(): 4.3e-32, 54.77% id in 283 aa, and of Streptococcus agalactiae response regulator sag1016 SWALL:Q8DZT1 (EMBL:AE014238) (244 aa) fasta scores: E(): 1.7e-05, 35.92% id in 103 aa, and C-terminus is similar to the C-terminus of Streptococcus agalactiae Gbs1051 protein SWALL:Q8E5H8 (EMBL:AL766848) (244 aa) fasta scores: E(): 1.7e-05, 35.92% id in 103 aa; putative transmembrane and transcriptional regulatory protein 1131281 3288346 BF9343_0863 Bacteroides fragilis NCTC 9343 putative transmembrane and transcriptional regulatory protein YP_210595.1 1130439 D 272559 CDS YP_210596.1 60680452 3288609 1131615..1132550 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4125 SWALL:AAO79230 (EMBL:AE016943) (324 aa) fasta scores: E(): 4.8e-102, 83.38% id in 301 aa, and to Clostridium tetani fe-s oxidoreductase CTC00179 SWALL:AAO34830 (EMBL:AE015936) (314 aa) fasta scores: E(): 4.5e-43, 41.33% id in 300 aa, and to Bacillus subtilis hypothetical protein YtqA SWALL:O35008 (EMBL:AF008220) (322 aa) fasta scores: E(): 3.6e-42, 39% id in 300 aa; hypothetical protein 1132550 3288609 BF9343_0864 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210596.1 1131615 D 272559 CDS YP_210597.1 60680453 3288345 1132669..1133868 1 NC_003228.3 Similar to Escherichia coli anaerobic nitric oxide reductase flavorubredoxin NorV or FlrD or B2710 SWALL:NORV_ECOLI (SWALL:Q46877) (479 aa) fasta scores: E(): 1.2e-34, 32.22% id in 391 aa, and to Bacteroides thetaiotaomicron flavoprotein BT4126 SWALL:AAO79231 (EMBL:AE016943) (398 aa) fasta scores: E(): 1.4e-147, 91.7% id in 398 aa, and to Fusobacterium nucleatum flavoprotein FN0512 SWALL:Q8RG10 (EMBL:AE010563) (403 aa) fasta scores: E(): 4e-66, 45.22% id in 398 aa; putative flavoprotein 1133868 3288345 BF9343_0865 Bacteroides fragilis NCTC 9343 putative flavoprotein YP_210597.1 1132669 D 272559 CDS YP_210598.1 60680454 3289230 1133908..1134720 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 glucosamine-6-phosphate deaminase NagB or GlmD or b0678 or Z0825 or ECS0708 SWALL:NAGB_ECOLI (SWALL:P09375) (266 aa) fasta scores: E(): 1.6e-66, 64.63% id in 263 aa, and to Bacteroides thetaiotaomicron glucosamine-6-phosphate deaminase NagB or BT4127 SWALL:AAO79232 (EMBL:AE016943) (270 aa) fasta scores: E(): 9.9e-104, 96.29% id in 270 aa, and to Borrelia burgdorferi glucosamine-6-phosphate deaminase NagB or BB0152 SWALL:NAGB_BORBU (SWALL:O30564) (268 aa) fasta scores: E(): 8.4e-74, 69.31% id in 264 aa; putative glucosamine-6-phosphate deaminase 1134720 nagB 3289230 nagB Bacteroides fragilis NCTC 9343 putative glucosamine-6-phosphate deaminase YP_210598.1 1133908 D 272559 CDS YP_210599.1 60680455 3288473 complement(1134814..1135239) 1 NC_003228.3 hypothetical protein 1135239 3288473 BF9343_0867 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210599.1 1134814 R 272559 CDS YP_210600.1 60680456 3288553 complement(1135303..1135917) 1 NC_003228.3 Similar to Streptomyces coelicolor ORF1, ORF2, ORF3, ORF4, ORF5 genes SWALL:Q9S5E4 (EMBL:AB017438) (200 aa) fasta scores: E(): 1e-20, 33.33% id in 198 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4128 SWALL:AAO79233 (EMBL:AE016943) (204 aa) fasta scores: E(): 1.2e-69, 89.6% id in 202 aa, and to Vibrio parahaemolyticus putative translation factor vp1953 SWALL:BAC60216 (EMBL:AP005079) (206 aa) fasta scores: E(): 4.1e-28, 42% id in 200 aa; putative Sua5/yciO/yrdC family protein 1135917 3288553 BF9343_0868 Bacteroides fragilis NCTC 9343 putative Sua5/yciO/yrdC family protein YP_210600.1 1135303 R 272559 CDS YP_210601.1 60680457 3288682 complement(1135965..1138478) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane assembly protein BT4129 SWALL:AAO79234 (EMBL:AE016943) (838 aa) fasta scores: E(): 0, 77.38% id in 840 aa, and to Escherichia coli O157:H7 suppressor of OmpF assembly mutants AsmA or Z3232 or ECS2871 SWALL:Q8X7L5 (EMBL:AE005432) (617 aa) fasta scores: E(): 0.0065, 23.93% id in 468 aa, and to Escherichia coli protein AsmA precursor or B2064 SWALL:ASMA_ECOLI (SWALL:P28249) (617 aa) fasta scores: E(): 0.0065, 23.93% id in 468 aa; putative outer membrane protein 1138478 3288682 BF9343_0869 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210601.1 1135965 R 272559 CDS YP_210602.1 60680458 3288644 complement(1138716..1140716) 1 NC_003228.3 Similar to Lymantria dispar multicapsid nuclear polyhedrosis virus Ld-helicase-2 SWALL:Q9YMS4 (EMBL:AF081810) (460 aa) fasta scores: E(): 2e-11, 28.94% id in 418 aa, and to Bacteroides thetaiotaomicron putative helicase BT4130 SWALL:AAO79235 (EMBL:AE016943) (665 aa) fasta scores: E(): 1e-213, 83.25% id in 663 aa, and to Bacteroides thetaiotaomicron DNA repair and recombination protein, putative helicase BT0721 SWALL:AAO75828 (EMBL:AE016928) (848 aa) fasta scores: E(): 3.1e-68, 40.33% id in 605 aa; putative helicase protein 1140716 3288644 BF9343_0870 Bacteroides fragilis NCTC 9343 putative helicase protein YP_210602.1 1138716 R 272559 CDS YP_210603.1 60680459 3288685 complement(1140718..1141503) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4131 SWALL:AAO79236 (EMBL:AE016943) (261 aa) fasta scores: E(): 8.2e-70, 69.34% id in 261 aa, and to Bifidobacterium longum possible HAD-type hydrolase bl0958 SWALL:Q8G5P6 (EMBL:AE014718) (273 aa) fasta scores: E(): 7.2e-30, 38.25% id in 264 aa, and to Bacteroides thetaiotaomicron hydrolase, haloacid dehalogenase-like hydrolase BT1666 SWALL:AAO76773 (EMBL:AE016932) (258 aa) fasta scores: E(): 1.2e-28, 38.4% id in 263 aa; putative haloacid dehalogenase-like hydrolase 1141503 3288685 BF9343_0871 Bacteroides fragilis NCTC 9343 putative haloacid dehalogenase-like hydrolase YP_210603.1 1140718 R 272559 CDS YP_210604.1 60680460 3288549 1141675..1142859 1 NC_003228.3 Similar to Bacillus subtilis putative aminotransferase B PatB SWALL:PATB_BACSU (SWALL:Q08432) (387 aa) fasta scores: E(): 4.2e-67, 43.49% id in 384 aa, and to Bacteroides thetaiotaomicron putative aminotransferase BT4138 SWALL:AAO79243 (EMBL:AE016943) (389 aa) fasta scores: E(): 2.9e-129, 77.14% id in 385 aa, and to Yersinia pestis putative aminotransferase YPO3006 SWALL:Q8ZCI3 (EMBL:AJ414154) (393 aa) fasta scores: E(): 3.4e-71, 44.61% id in 390 aa; putative aminotransferase 1142859 3288549 BF9343_0872 Bacteroides fragilis NCTC 9343 putative aminotransferase YP_210604.1 1141675 D 272559 CDS YP_210605.1 60680461 3288578 1142891..1144126 1 NC_003228.3 Similar to Schizosaccharomyces pombe O-acetylhomoserine spbc428.11 SWALL:CYSD_SCHPO (SWALL:O13326) (429 aa) fasta scores: E(): 7.6e-27, 33.56% id in 429 aa, and to Clostridium acetobutylicum O-acetylhomoserine sulfhydrylase Cac0102 SWALL:Q97MT9 (EMBL:AE007523) (409 aa) fasta scores: E(): 3.2e-45, 32.59% id in 408 aa, and to Deinococcus radiodurans O-acetylhomoserine dr2186 SWALL:Q9RSD8 (EMBL:AE002051) (418 aa) fasta scores: E(): 7.6e-36, 33.75% id in 394 aa; putative O-acetylhomoserine synthase 1144126 3288578 BF9343_0873 Bacteroides fragilis NCTC 9343 putative O-acetylhomoserine synthase YP_210605.1 1142891 D 272559 CDS YP_210606.1 60680462 3288676 1144152..1144733 1 NC_003228.3 Similar to Bordetella avium RNA polymerase ECF-type sigma factor RhuI SWALL:Q8L1U9 (EMBL:AY095952) (168 aa) fasta scores: E(): 0.0019, 26.82% id in 164 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4636 SWALL:AAO79741 (EMBL:AE016946) (197 aa) fasta scores: E(): 3.3e-12, 31.97% id in 172 aa, and to Bacteroides thetaiotaomicron ECF-type sigma factor BT0978 SWALL:AAO76085 (EMBL:AE016929) (163 aa) fasta scores: E(): 9.6e-11, 32.48% id in 157 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3517 SWALL:AAO78623 (EMBL:AE016941) (190 aa) fasta scores: E(): 3.5e-08, 28.73% id in 174 aa; putative RNA polymerase ECF-type sigma factor 1144733 3288676 BF9343_0874 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210606.1 1144152 D 272559 CDS YP_210607.1 60680463 3288684 1144843..1145949 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 3.6e-14, 29.83% id in 238 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT3518 SWALL:AAO78624 (EMBL:AE016941) (400 aa) fasta scores: E(): 1.7e-22, 30.55% id in 288 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT3270 SWALL:AAO78376 (EMBL:AE016939) (402 aa) fasta scores: E(): 2e-21, 28.91% id in 370 aa; putative anti-sigma factor 1145949 3288684 BF9343_0875 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210607.1 1144843 D 272559 CDS YP_210608.1 60680464 3288772 1146141..1146575 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3750 SWALL:AAO78855 (EMBL:AE016942) (866 aa) fasta scores: E(): 0.019, 29.24% id in 106 aa; putative outer membrane protein 1146575 3288772 BF9343_0876 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210608.1 1146141 D 272559 CDS YP_210609.1 60680465 3288474 complement(1146588..1147271) 1 NC_003228.3 Similar to Lactococcus lactis FNR-like protein SWALL:Q9S392 (EMBL:AJ006750) (229 aa) fasta scores: E(): 0.013, 24.29% id in 214 aa, and to Bacteroides thetaiotaomicron transcription regulator, CRP family BT4300 SWALL:Q89ZS6 (EMBL:AE016944) (220 aa) fasta scores: E(): 1.9e-54, 68.98% id in 216 aa, and to Bacteroides thetaiotaomicron cAMP-binding domain BT0688 SWALL:Q8A9X7 (EMBL:AE016928) (222 aa) fasta scores: E(): 5.8e-13, 28.88% id in 225 aa; putative FNR-like protein 1147271 3288474 BF9343_0877 Bacteroides fragilis NCTC 9343 putative FNR-like protein YP_210609.1 1146588 R 272559 CDS YP_210610.1 60680466 3288715 1147447..1148043 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative membrane protein BT4301 SWALL:AAO79406 (EMBL:AE016944) (199 aa) fasta scores: E(): 3e-70, 94.44% id in 198 aa, and to Anabaena sp. hypothetical protein ALL2000 SWALL:Q8YVH8 (EMBL:AP003587) (197 aa) fasta scores: E(): 7.9e-13, 26.42% id in 193 aa, and to Yersinia pestis putative membrane protein YPO3950 or Y3879 SWALL:Q8ZA68 (EMBL:AJ414159) (194 aa) fasta scores: E(): 2.6e-12, 26.94% id in 193 aa; putative transmembrane protein 1148043 3288715 BF9343_0878 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210610.1 1147447 D 272559 CDS YP_210611.1 60680467 3288829 complement(1148081..1148758) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4302 SWALL:AAO79407 (EMBL:AE016944) (221 aa) fasta scores: E(): 1.3e-61, 66.51% id in 218 aa, and to Xanthomonas axonopodis hypothetical protein Xac4366 SWALL:Q8PEI3 (EMBL:AE012091) (289 aa) fasta scores: E(): 9.5e-18, 34.35% id in 195 aa, and to Xanthomonas campestris hypothetical protein Xcc4233 SWALL:Q8P345 (EMBL:AE012551) (382 aa) fasta scores: E(): 1.2e-17, 35.32% id in 201 aa; putative transmembrane protein 1148758 3288829 BF9343_0879 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210611.1 1148081 R 272559 CDS YP_210612.1 60680468 3287210 1148929..1150869 1 NC_003228.3 Similar to Synechococcus sp. glycosyltransferase MalQ Sec0007 SWALL:Q8KPV1 (EMBL:AY120852) (681 aa) fasta scores: E(): 1.5e-26, 30.25% id in 671 aa, and to Bacteroides thetaiotaomicron glycogen debranching enzyme-related protein BT4303 SWALL:AAO79408 (EMBL:AE016944) (645 aa) fasta scores: E(): 0, 90.06% id in 644 aa, and to Clostridium perfringens probable glycogen debranching enzyme Gde or CPE2336 SWALL:Q8XHY8 (EMBL:AP003193) (672 aa) fasta scores: E(): 2.1e-34, 28.4% id in 669 aa; hypothetical protein 1150869 3287210 BF9343_0880 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210612.1 1148929 D 272559 CDS YP_210613.1 60680469 3287134 1150884..1152158 1 NC_003228.3 Similar to Bacillus subtilis putative glycosyl transferase YqgM SWALL:YQGM_BACSU (SWALL:P54490) (359 aa) fasta scores: E(): 7e-14, 25.17% id in 282 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT4304 SWALL:AAO79409 (EMBL:AE016944) (424 aa) fasta scores: E(): 1.4e-163, 95.28% id in 424 aa, and to Thermoplasma acidophilum hypothetical protein Ta0340 SWALL:Q9HL90 (EMBL:AL445064) (388 aa) fasta scores: E(): 9.9e-35, 31.89% id in 417 aa; putative glycosyl transferase 1152158 3287134 BF9343_0881 Bacteroides fragilis NCTC 9343 putative glycosyl transferase YP_210613.1 1150884 D 272559 CDS YP_210614.1 60680470 3287136 1152171..1153559 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative alpha-amylase BT4305 SWALL:AAO79410 (EMBL:AE016944) (460 aa) fasta scores: E(): 3.9e-157, 90.04% id in 462 aa, and to Methanosarcina mazei alpha-amylase MM0862 SWALL:Q8PYJ9 (EMBL:AE013311) (398 aa) fasta scores: E(): 6.5e-45, 36.77% id in 397 aa, and to Methanosarcina acetivorans alpha-amylase ma4052 SWALL:Q8TIT9 (EMBL:AE011117) (396 aa) fasta scores: E(): 1.7e-44, 36.27% id in 397 aa; putative glycosyl hydrolase 1153559 3287136 BF9343_0882 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase YP_210614.1 1152171 D 272559 CDS YP_210615.1 60680471 3286530 complement(1153945..1155435) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4306 SWALL:AAO79411 (EMBL:AE016944) (542 aa) fasta scores: E(): 8.5e-20, 49.9% id in 541 aa; hypothetical protein 1155435 3286530 BF9343_0883 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210615.1 1153945 R 272559 CDS YP_210616.1 60680472 3285872 complement(1155459..1156151) 1 NC_003228.3 Similar to Bacillus stearothermophilus glycogen synthase GlgA SWALL:GLGA_BACST (SWALL:O08328) (485 aa) fasta scores: E(): 1.2e-07, 37.63% id in 93 aa, and to Bacteroides thetaiotaomicron putative glycogen synthase BT4307 SWALL:Q89ZR9 (EMBL:AE016944) (234 aa) fasta scores: E(): 2.6e-82, 89.38% id in 226 aa, and to Chlorobium tepidum glycogen synthase GlgA or CT2012 SWALL:GLGA_CHLTE (SWALL:Q8KAY6) (488 aa) fasta scores: E(): 4.8e-15, 30.61% id in 196 aa; possible glycogen synthase 1156151 3285872 BF9343_0884 Bacteroides fragilis NCTC 9343 possible glycogen synthase YP_210616.1 1155459 R 272559 CDS YP_210617.1 60680473 3289243 1156530..1157378 1 NC_003228.3 Similar to Thermotoga neapolitana pantoate--beta-alanine ligase PanC SWALL:PANC_THENE (SWALL:O86953) (280 aa) fasta scores: E(): 1.5e-42, 44.8% id in 279 aa, and to Bacteroides thetaiotaomicron pantoate--beta-alanine ligase BT4308 SWALL:AAO79413 (EMBL:AE016944) (282 aa) fasta scores: E(): 5e-98, 87.54% id in 281 aa, and to Thermotoga maritima pantoate--beta-alanine ligase PanC or TM1077 SWALL:PANC_THEMA (SWALL:Q9X0G6) (280 aa) fasta scores: E(): 7.2e-43, 45.19% id in 281 aa; putative pantoate--beta-alanine ligase 1157378 panC 3289243 panC Bacteroides fragilis NCTC 9343 putative pantoate--beta-alanine ligase YP_210617.1 1156530 D 272559 CDS YP_210618.1 60680474 3286258 1157401..1157754 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri aspartate 1-decarboxylase precursor PanD or B0131 or C0160 or Z0142 or ECS0135 or SF0128 or s0130 SWALL:PAND_ECOLI (SWALL:P31664) (126 aa) fasta scores: E(): 5.4e-13, 44.86% id in 107 aa, and to Bacteroides thetaiotaomicron aspartate 1-decarboxylase precursor pand or BT4309 SWALL:AAO79414 (EMBL:AE016944) (117 aa) fasta scores: E(): 5.8e-43, 98.29% id in 117 aa, and to Wolinella succinogenes aspartate 1-decarboxylase precursor PanD SWALL:PAND_WOLSU (SWALL:O34246) (121 aa) fasta scores: E(): 4.3e-22, 58.97% id in 117 aa; putative aspartate 1-decarboxylase precursor 1157754 panD 3286258 panD Bacteroides fragilis NCTC 9343 putative aspartate 1-decarboxylase precursor YP_210618.1 1157401 D 272559 CDS YP_210619.1 60680475 3285867 complement(1157937..1160225) 1 NC_003228.3 Similar to Pyrococcus kodakaraensis glutamate synthase SWALL:O33474 (EMBL:D86223) (481 aa) fasta scores: E(): 1.9e-64, 51.26% id in 476 aa, and to Bacteroides thetaiotaomicron NADPH-dependent glutamate synthase small chain BT4310 SWALL:AAO79415 (EMBL:AE016944) (763 aa) fasta scores: E(): 0, 91.35% id in 763 aa, and to Chlorobium tepidum glutamate synthase, small subunit Gltd-1 or CT0473 SWALL:Q8KF59 (EMBL:AE012823) (472 aa) fasta scores: E(): 3.8e-88, 57.54% id in 464 aa; putative NADPH-dependent glutamate synthase 1160225 3285867 BF9343_0887 Bacteroides fragilis NCTC 9343 putative NADPH-dependent glutamate synthase YP_210619.1 1157937 R 272559 CDS YP_210620.1 60680476 3286788 complement(1160368..1161579) 1 NC_003228.3 Similar to Brucella abortus glucose/galactose transporter GluP SWALL:GLUP_BRUAB (SWALL:Q44623) (412 aa) fasta scores: E(): 1.3e-35, 32.85% id in 414 aa, and to Bacteroides thetaiotaomicron glucose/galactose transporter BT4311 SWALL:AAO79416 (EMBL:AE016944) (386 aa) fasta scores: E(): 1.8e-134, 87.3% id in 386 aa, and to Brucella melitensis glucose/galactose transporter BmeII1053 SWALL:Q8YB48 (EMBL:AE009738) (412 aa) fasta scores: E(): 9.7e-36, 32.85% id in 414 aa; putative sugar transporter 1161579 3286788 BF9343_0888 Bacteroides fragilis NCTC 9343 putative sugar transporter YP_210620.1 1160368 R 272559 CDS YP_210621.1 60680477 3288458 complement(1161779..1163053) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri seryl-tRNA synthetase SerS or B0893 or C1030 or Z1239 or ECS0978 or SF0852 or s0893 SWALL:SYS_ECOLI (SWALL:P09156) (430 aa) fasta scores: E(): 1.1e-51, 41.01% id in 434 aa, and to Bacteroides thetaiotaomicron seryl-tRNA synthetase BT4312 SWALL:AAO79417 (EMBL:AE016944) (424 aa) fasta scores: E(): 7.8e-149, 93.16% id in 424 aa, and to Chlorobium tepidum seryl-tRNA synthetase SerS or CT0606 SWALL:Q8KES6 (EMBL:AE012834) (427 aa) fasta scores: E(): 1.4e-62, 45.13% id in 432 aa; putative seryl-tRNA synthetase 1163053 serS 3288458 serS Bacteroides fragilis NCTC 9343 putative seryl-tRNA synthetase YP_210621.1 1161779 R 272559 CDS YP_210622.1 60680478 3288847 complement(1163210..1163479) 1 NC_003228.3 Similar to Brucella abortus 50S ribosomal protein L27 RpmA or Rl27 SWALL:RL27_BRUAB (SWALL:Q8VW58) (89 aa) fasta scores: E(): 9.9e-21, 67.41% id in 89 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L27 BT4313 SWALL:AAO79418 (EMBL:AE016944) (89 aa) fasta scores: E(): 8.3e-33, 96.62% id in 89 aa, and to Xylella fastidiosa 50S ribosomal protein L27 RpmA or xf2423 SWALL:RL27_XYLFA (SWALL:Q9PAS2) (85 aa) fasta scores: E(): 3.7e-21, 68.23% id in 85 aa; putative 50S ribosomal protein L27 1163479 rpmA 3288847 rpmA Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L27 YP_210622.1 1163210 R 272559 CDS YP_210623.1 60680479 3285961 complement(1163502..1163819) 1 NC_003228.3 Similar to Staphylococcus epidermidis 50S ribosomal protein L21 Se1330 SWALL:Q8CS87 (EMBL:AE016748) (102 aa) fasta scores: E(): 2.8e-12, 46.66% id in 105 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L21 BT4314 SWALL:AAO79419 (EMBL:AE016944) (105 aa) fasta scores: E(): 1.4e-34, 91.42% id in 105 aa, and to Clostridium perfringens 50S ribosomal protein L21 CPE2130 SWALL:Q8XII9 (EMBL:AP003193) (103 aa) fasta scores: E(): 4e-13, 45.71% id in 105 aa; putative 50S ribosomal protein L21 1163819 3285961 BF9343_0891 Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L21 YP_210623.1 1163502 R 272559 CDS YP_210624.1 60680480 3287256 complement(1164597..1165265) 1 NC_003228.3 Similar to Erwinia chrysanthemi indigoidine systhesis protein IdgB SWALL:Q9KHB5 (EMBL:AF265211) (230 aa) fasta scores: E(): 5.7e-12, 30.69% id in 215 aa, and to Bacteroides thetaiotaomicron Hpr BT4315 SWALL:Q89ZR1 (EMBL:AE016944) (213 aa) fasta scores: E(): 1.7e-50, 65.72% id in 213 aa, and to Methanosarcina acetivorans haloacid dehalogenase-like hydrolase ma2967 SWALL:Q8TLR4 (EMBL:AE010999) (279 aa) fasta scores: E(): 1.1e-32, 49.04% id in 210 aa; putative haloacid dehalogenase-like hydrolase 1165265 3287256 BF9343_0892 Bacteroides fragilis NCTC 9343 putative haloacid dehalogenase-like hydrolase YP_210624.1 1164597 R 272559 CDS YP_210625.1 60680481 3287537 complement(1165313..1165828) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri lipoprotein Spr precursor or B2175 or C2712 or Z3434 or ECS3067 or SF2262 or s2391 SWALL:SPR_ECOLI (SWALL:P77685) (188 aa) fasta scores: E(): 4e-16, 38.31% id in 154 aa, and to Bacteroides thetaiotaomicron putative lipoprotein protein BT4317 SWALL:AAO79422 (EMBL:AE016944) (170 aa) fasta scores: E(): 1.4e-47, 71.77% id in 163 aa, and to Shewanella oneidensis lipoprotein, Nlp/P60 family so0061 SWALL:Q8EKN1 (EMBL:AE015458) (154 aa) fasta scores: E(): 8.5e-16, 38.88% id in 162 aa; putative lipoprotein 1165828 3287537 BF9343_0893 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_210625.1 1165313 R 272559 CDS YP_210626.1 60680482 3287375 complement(1165833..1166540) 1 NC_003228.3 Similar to Lactobacillus sakei L45 hypothetical 33.6 kDa protein LasY SWALL:Q9AEC8 (EMBL:Z54312) (300 aa) fasta scores: E(): 1.2e-19, 35.51% id in 214 aa, and to Bacteroides thetaiotaomicron ATP-binding protein BT4318 SWALL:AAO79423 (EMBL:AE016944) (234 aa) fasta scores: E(): 2.9e-73, 83.33% id in 234 aa, and to Pyrococcus abyssi ABC transporter, ATP-binding protein PyrAB10160 or Pab1696 SWALL:Q9UZY1 (EMBL:AJ248286) (253 aa) fasta scores: E(): 2.2e-20, 34.04% id in 235 aa; putative ATP-binding component of ABC transporter protein 1166540 3287375 BF9343_0894 Bacteroides fragilis NCTC 9343 putative ATP-binding component of ABC transporter protein YP_210626.1 1165833 R 272559 CDS YP_210627.1 60680483 3288926 complement(1166572..1168053) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4319 SWALL:AAO79424 (EMBL:AE016944) (496 aa) fasta scores: E(): 1.5e-128, 62.9% id in 496 aa; putative transmembrane protein 1168053 3288926 BF9343_0895 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210627.1 1166572 R 272559 CDS YP_210628.1 60680484 3288073 complement(1168150..1170969) 1 NC_003228.3 Similar to Escherichia coli probable zinc protease PqqL or B1494 SWALL:PQQL_ECOLI (SWALL:P31828) (931 aa) fasta scores: E(): 1.5e-56, 26.75% id in 927 aa, and to Bacteroides thetaiotaomicron putative zinc protease BT4320 SWALL:AAO79425 (EMBL:AE016944) (946 aa) fasta scores: E(): 2.4e-217, 60.31% id in 945 aa, and to Porphyromonas gingivalis immunoreactive 106 kDa antigen PG115 SWALL:Q9XBW5 (EMBL:AF153767) (941 aa) fasta scores: E(): 1.2e-160, 47.35% id in 944 aa; putative zinc protease 1170969 3288073 BF9343_0896 Bacteroides fragilis NCTC 9343 putative zinc protease YP_210628.1 1168150 R 272559 CDS YP_210629.1 60680485 3289171 complement(1171117..1171920) 1 NC_003228.3 Similar to Pseudomonas aeruginosa 2-dehydro-3-deoxyphosphooctonate aldolase KdsA or Pa3636 SWALL:KDSA_PSEAE (SWALL:Q9ZFK4) (281 aa) fasta scores: E(): 4.1e-40, 45.52% id in 268 aa, and to Bacteroides thetaiotaomicron 2-dehydro-3-deoxyphosphooctonate aldolase BT4321 SWALL:AAO79426 (EMBL:AE016944) (266 aa) fasta scores: E(): 6.4e-89, 91.35% id in 266 aa, and to Chlorobium tepidum 2-dehydro-3-deoxyphosphooctonate aldolase KdsA or CT0088 SWALL:Q8KG80 (EMBL:AE012788) (280 aa) fasta scores: E(): 6.5e-48, 51.96% id in 254 aa; putative 2-dehydro-3-deoxyphosphooctonate aldolase 1171920 kdsA 3289171 kdsA Bacteroides fragilis NCTC 9343 putative 2-dehydro-3-deoxyphosphooctonate aldolase YP_210629.1 1171117 R 272559 CDS YP_210630.1 60680486 3285206 complement(1171936..1172862) 1 NC_003228.3 Similar to Bacillus subtilis multidrug transporter BmrU SWALL:BMRU_BACSU (SWALL:P39074) (297 aa) fasta scores: E(): 6.9e-09, 27.55% id in 254 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, with a diacylglycerol kinase catalytic domain BT4322 SWALL:AAO79427 (EMBL:AE016944) (308 aa) fasta scores: E(): 1e-108, 88.63% id in 308 aa, and to Thermotoga maritima hypothetical protein Tm0358 SWALL:Q9WYJ3 (EMBL:AE001716) (304 aa) fasta scores: E(): 6.8e-18, 27.39% id in 303 aa; hypothetical protein 1172862 3285206 BF9343_0898 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210630.1 1171936 R 272559 CDS YP_210631.1 60680487 3285848 complement(1173154..1174074) 1 NC_003228.3 Similar to Bacillus halodurans tRNA delta(2)-isopentenylpyrophosphate transferase MiaA or BH2366 SWALL:MIAA_BACHD (SWALL:Q9KAC3) (314 aa) fasta scores: E(): 1.1e-24, 35.18% id in 324 aa, and to Bacteroides thetaiotaomicron tRNA delta(2)-isopentenylpyrophosphate transferase BT4323 SWALL:Q89ZQ3 (EMBL:AE016944) (306 aa) fasta scores: E(): 5.4e-95, 86.18% id in 304 aa, and to Treponema pallidum tRNA delta(2)-isopentenylpyrophosphate transferase MiaA or TP0637 SWALL:MIAA_TREPA (SWALL:O83644) (316 aa) fasta scores: E(): 3.3e-37, 43.98% id in 291 aa; putative tRNA delta(2)-isopentenylpyrophosphate transferase 1174074 3285848 BF9343_0899 Bacteroides fragilis NCTC 9343 putative tRNA delta(2)-isopentenylpyrophosphate transferase YP_210631.1 1173154 R 272559 CDS YP_210632.1 60680488 3286190 complement(1174294..1175499) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4325 SWALL:AAO79430 (EMBL:AE016944) (401 aa) fasta scores: E(): 4.7e-129, 82% id in 400 aa; putative ATP/GTP-binding transmembrane protein 1175499 3286190 BF9343_0900 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding transmembrane protein YP_210632.1 1174294 R 272559 CDS YP_210633.1 60680489 3288948 complement(1175496..1176140) 1 NC_003228.3 Similar to Streptomyces hygroscopicus ABC-transporter OrfX SWALL:Q54289 (EMBL:X86780) (235 aa) fasta scores: E(): 8.3e-12, 31.7% id in 205 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT4326 SWALL:AAO79431 (EMBL:AE016944) (217 aa) fasta scores: E(): 5.3e-68, 82.71% id in 214 aa, and to Streptococcus mutans putative ABC transporter, ATP-binding protein SMU.1094 SWALL:Q8DU56 (EMBL:AE014947) (218 aa) fasta scores: E(): 5.1e-12, 30.68% id in 189 aa; putative ATP-binding component of ABC transporter 1176140 3288948 BF9343_0901 Bacteroides fragilis NCTC 9343 putative ATP-binding component of ABC transporter YP_210633.1 1175496 R 272559 CDS YP_210634.1 60680490 3285409 complement(1176153..1177706) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4327 SWALL:AAO79432 (EMBL:AE016944) (515 aa) fasta scores: E(): 4.4e-115, 63.05% id in 517 aa; hypothetical protein 1177706 3285409 BF9343_0902 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210634.1 1176153 R 272559 CDS YP_210635.1 60680491 3287226 complement(1177734..1178423) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4328 SWALL:AAO79433 (EMBL:AE016944) (232 aa) fasta scores: E(): 3.2e-76, 86.46% id in 229 aa, and to Pseudomonas putida conserved hypothetical protein tigr00046 PP4985 SWALL:AAN70551 (EMBL:AE016792) (239 aa) fasta scores: E(): 2.8e-12, 29.68% id in 219 aa, and to Xanthomonas campestris hypothetical protein Xcc2885 SWALL:Q8P6T0 (EMBL:AE012401) (244 aa) fasta scores: E(): 6.7e-12, 34.24% id in 219 aa; hypothetical protein 1178423 3287226 BF9343_0903 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210635.1 1177734 R 272559 CDS YP_210636.1 60680492 3288157 complement(1178429..1178998) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with a conserved domain BT4329 SWALL:AAO79434 (EMBL:AE016944) (198 aa) fasta scores: E(): 2.8e-51, 70.83% id in 192 aa, and to Leptospira interrogans conserved hypothetical protein with Uvr motif la1935 SWALL:Q8F4V4 (EMBL:AE011366) (190 aa) fasta scores: E(): 6.9e-19, 33.88% id in 183 aa, and to Chlorobium tepidum hypothetical protein CT0265 SWALL:Q8KFQ7 (EMBL:AE012805) (204 aa) fasta scores: E(): 3.4e-18, 41.45% id in 193 aa; hypothetical protein 1178998 3288157 BF9343_0904 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210636.1 1178429 R 272559 CDS YP_210637.1 60680493 3288601 complement(1179001..1180260) 1 NC_003228.3 Similar to Escherichia coli xanthosine permease XapB or B2406 SWALL:XAPB_ECOLI (SWALL:P45562) (418 aa) fasta scores: E(): 1.2e-93, 56.59% id in 417 aa, and to Bacteroides thetaiotaomicron xanthosine permease BT4330 SWALL:AAO79435 (EMBL:AE016944) (416 aa) fasta scores: E(): 6.2e-149, 87.56% id in 418 aa, and to Salmonella typhi xanthosine permease STY2657 or XapB or t0436 SWALL:AAO68154 (EMBL:AL627274) (418 aa) fasta scores: E(): 7.1e-96, 57.93% id in 416 aa; putative nucleoside/H+ permease 1180260 3288601 BF9343_0905 Bacteroides fragilis NCTC 9343 putative nucleoside/H+ permease YP_210637.1 1179001 R 272559 CDS YP_210638.1 60680494 3288713 1181360..1182517 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 2.3e-06, 21.11% id in 412 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 9.5e-06, 21.58% id in 403 aa; hypothetical protein 1182517 3288713 BF9343_0907 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210638.1 1181360 D 272559 CDS YP_210639.1 60680495 3288878 complement(1182900..1184078) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4331 SWALL:AAO79436 (EMBL:AE016944) (392 aa) fasta scores: E(): 9.1e-149, 93.87% id in 392 aa, and to Shewanella oneidensis conserved hypothetical protein so1149 SWALL:Q8EHR8 (EMBL:AE015559) (396 aa) fasta scores: E(): 2.8e-50, 40.3% id in 397 aa, and to Ralstonia solanacearum hypothetical protein RSC0051 or RS01874 SWALL:Q8Y3C9 (EMBL:AL646057) (397 aa) fasta scores: E(): 2.8e-50, 40.79% id in 402 aa, and to Vibrio parahaemolyticus putative SAM-dependent methyltransferase vp1629 SWALL:BAC59892 (EMBL:AP005078) (418 aa) fasta scores: E(): 3.9e-50, 39.64% id in 396 aa; hypothetical protein 1184078 3288878 BF9343_0908 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210639.1 1182900 R 272559 CDS YP_210640.1 60680496 3288709 complement(1184103..1184753) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4332 SWALL:AAO79437 (EMBL:AE016944) (216 aa) fasta scores: E(): 2.1e-68, 81.81% id in 209 aa, and to Xenopus laevis Werner syndrome helicase homolog Ffa-1 SWALL:WRN_XENLA (SWALL:O93530) (1436 aa) fasta scores: E(): 2.9e-11, 35.17% id in 199 aa, and to Shewanella oneidensis exonuclease, putative so1153 SWALL:Q8EHR4 (EMBL:AE015559) (261 aa) fasta scores: E(): 1.3e-10, 27.27% id in 198 aa; putative 3'-5' exonuclease 1184753 3288709 BF9343_0909 Bacteroides fragilis NCTC 9343 putative 3'-5' exonuclease YP_210640.1 1184103 R 272559 CDS YP_210641.1 60680497 3288892 complement(1184760..1185395) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4333 SWALL:AAO79438 (EMBL:AE016944) (219 aa) fasta scores: E(): 1.3e-62, 75.79% id in 219 aa; conserved hypothetical protein, possible C-terminal metal binding site 1185395 3288892 BF9343_0910 Bacteroides fragilis NCTC 9343 conserved hypothetical protein, possible C-terminal metal binding site YP_210641.1 1184760 R 272559 CDS YP_210642.1 60680498 3288886 1185508..1187997 1 NC_003228.3 Similar to Bacillus subtilis stage III sporulation protein E SpoIIIE from codon 158 SWALL:SP3E_BACSU (SWALL:P21458) (787 aa) fasta scores: E(): 2.8e-59, 38.29% id in 679 aa, and to entire Bacteroides thetaiotaomicron FtsK/SpoIIIE family protein BT4334 SWALL:AAO79439 (EMBL:AE016944) (831 aa) fasta scores: E(): 0, 81.51% id in 833 aa, and to Chlorobium tepidum FtsK/SpoIIIE family protein CT1787 SWALL:Q8KBK0 (EMBL:AE012931) (804 aa) fasta scores: E(): 1.4e-86, 39.41% id in 789 aa; putative FtsK/SpoIIIE-like protein 1187997 3288886 BF9343_0911 Bacteroides fragilis NCTC 9343 putative FtsK/SpoIIIE-like protein YP_210642.1 1185508 D 272559 CDS YP_210643.1 60680499 3288894 1188013..1188663 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4335 SWALL:AAO79440 (EMBL:AE016944) (215 aa) fasta scores: E(): 2.2e-48, 59.53% id in 215 aa; hypothetical protein 1188663 3288894 BF9343_0912 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210643.1 1188013 D 272559 CDS YP_210644.1 60680500 3285246 1188719..1189666 1 NC_003228.3 Similar to Mycobacterium tuberculosis thioredoxin reductase TrxB or Rv3913 or MT4032 or MTV028.04 SWALL:TRXB_MYCTU (SWALL:P52214) (335 aa) fasta scores: E(): 8.3e-53, 50.32% id in 304 aa, and to Bacteroides thetaiotaomicron thioredoxin reductase BT4336 SWALL:AAO79441 (EMBL:AE016944) (316 aa) fasta scores: E(): 1.6e-109, 90.12% id in 314 aa, and to Chlorobium tepidum thioredoxin reductase TrxB or CT0842 SWALL:Q8KE48 (EMBL:AE012852) (311 aa) fasta scores: E(): 5.4e-57, 54.93% id in 304 aa; putative thioredoxin reductase 1189666 trxB 3285246 trxB Bacteroides fragilis NCTC 9343 putative thioredoxin reductase YP_210644.1 1188719 D 272559 CDS YP_210645.1 60680501 3288893 complement(1189820..1192264) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis beta-N-acetylhexosaminidase NahB SWALL:BAC56900 (EMBL:AB102772) (747 aa) fasta scores: E(): 9e-56, 36.98% id in 776 aa, and to Bacteroides thetaiotaomicron beta-hexosaminidase precursor BT4337 truncated at the N-terminus SWALL:AAO79442 (EMBL:AE016944) (844 aa) fasta scores: E(): 0, 68.79% id in 814 aa, and to Bacteroides thetaiotaomicron putative beta-N-acetyl glucosaminidase B-NagA truncated at the N-terminus SWALL:Q8VS76 (EMBL:AF391102) (729 aa) fasta scores: E(): 6.1e-209, 72.85% id in 689 aa; putative beta-N-acetylhexosaminidase 1192264 3288893 BF9343_0914 Bacteroides fragilis NCTC 9343 putative beta-N-acetylhexosaminidase YP_210645.1 1189820 R 272559 CDS YP_210646.1 60680502 3288897 complement(1192309..1193010) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative regulator protein MalR or BT4338 SWALL:AAO79443 (EMBL:AF391102) (233 aa) fasta scores: E(): 7.4e-77, 84.12% id in 233 aa, and to Bacteroides thetaiotaomicron putative regulator protein MalR or BT4338 SWALL:Q8VS77 (EMBL:AF391102) (233 aa) fasta scores: E(): 7.4e-77, 84.12% id in 233 aa, and to Clostridium perfringens probable transcriptional regulator CPE0993 SWALL:Q8XLP8 (EMBL:AP003188) (236 aa) fasta scores: E(): 4.5e-12, 30.23% id in 215 aa; putative FNR-family transcriptional regulator protein 1193010 3288897 BF9343_0915 Bacteroides fragilis NCTC 9343 putative FNR-family transcriptional regulator protein YP_210646.1 1192309 R 272559 CDS YP_210647.1 60680503 3287922 complement(1193352..1195541) 1 NC_003228.3 Identical to Bacteroides fragilis glutamine synthetase GlnA SWALL:GLNA_BACFR (SWALL:P15623) (729 aa) fasta scores: E(): 0, 99.72% id in 729 aa, and similar to Bacteroides thetaiotaomicron glutamine synthetase BT4339 SWALL:AAO79444 (EMBL:AE016944) (729 aa) fasta scores: E(): 0, 92.73% id in 729 aa, and to Bacteroides thetaiotaomicron glutamine synthetase BT0543 SWALL:AAO75650 (EMBL:AE016928) (729 aa) fasta scores: E(): 6.1e-173, 60.08% id in 729 aa; glutamine synthetase 1195541 glnA 3287922 glnA Bacteroides fragilis NCTC 9343 glutamine synthetase YP_210647.1 1193352 R 272559 CDS YP_210648.1 60680504 3288895 1195844..1198000 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4341 SWALL:AAO79446 (EMBL:AE016944) (719 aa) fasta scores: E(): 2.2e-138, 68.66% id in 718 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3881 SWALL:AAO78986 (EMBL:AE016942) (390 aa) fasta scores: E(): 5.2e-18, 26.41% id in 371 aa; hypothetical protein 1198000 3288895 BF9343_0917 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210648.1 1195844 D 272559 CDS YP_210649.1 60680505 3288917 1198207..1199319 1 NC_003228.3 Similar to Escherichia coli reverse transcriptase Rt SWALL:Q05804 (EMBL:X62583) (319 aa) fasta scores: E(): 1.9e-26, 30.19% id in 308 aa, and to Bacteroides thetaiotaomicron RNA-directed DNA polymerase BT4342 SWALL:AAO79447 (EMBL:AE016944) (377 aa) fasta scores: E(): 5.3e-85, 57.86% id in 375 aa, and to Methanosarcina acetivorans hypothetical protein Ma2102 SWALL:Q8TP23 (EMBL:AE010896) (563 aa) fasta scores: E(): 4.9e-30, 34.29% id in 312 aa; putative reverse transcriptase 1199319 3288917 BF9343_0918 Bacteroides fragilis NCTC 9343 putative reverse transcriptase YP_210649.1 1198207 D 272559 CDS YP_210650.1 60680506 3288737 1199461..1201254 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 30S ribosomal protein S1 RpsA or SsyF or B0911 or C1049 or z1257 or ECS0994 or SF0907 or s0971 SWALL:RS1_ECOLI (SWALL:P02349) (557 aa) fasta scores: E(): 8.7e-68, 37.11% id in 555 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S1 BT4345 SWALL:AAO79450 (EMBL:AE016944) (599 aa) fasta scores: E(): 2.9e-209, 97.16% id in 599 aa, and to Porphyromonas gingivalis heme uptake protein A and B SWALL:Q9X6Q9 (EMBL:AF143945) (599 aa) fasta scores: E(): 1.7e-174, 78.52% id in 596 aa; putative 30S ribosomal protein S1 1201254 rpsA 3288737 rpsA Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S1 YP_210650.1 1199461 D 272559 CDS YP_210651.1 60680507 3288907 1201404..1202318 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri protein ElaC or B2268 or SF2347 or s2481 SWALL:ELAC_ECOLI (SWALL:Q47012) (305 aa) fasta scores: E(): 1.6e-25, 32.22% id in 301 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, with a metallo-beta-lactamase superfamily domain BT4346 SWALL:AAO79451 (EMBL:AE016944) (316 aa) fasta scores: E(): 1.4e-110, 82.56% id in 304 aa, and to Porphyromonas gingivalis hypothetical 33.6 kDa protein in RnhB-PgaA intergenic region SWALL:YPGA_PORGI (SWALL:Q51834) (297 aa) fasta scores: E(): 8.3e-71, 57.49% id in 287 aa; hypothetical protein 1202318 3288907 BF9343_0920 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210651.1 1201404 D 272559 CDS YP_210652.1 60680508 3288927 1202391..1202942 1 NC_003228.3 Similar to Bacillus subtilis RNA polymerase sigma factor SigW SWALL:SIGW_BACSU (SWALL:Q45585) (187 aa) fasta scores: E(): 5.1e-11, 30.68% id in 176 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4347 SWALL:AAO79452 (EMBL:AE016944) (183 aa) fasta scores: E(): 9.8e-63, 86.88% id in 183 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4647 SWALL:AAO79752 (EMBL:AE016946) (178 aa) fasta scores: E(): 2.6e-24, 40.9% id in 176 aa; putative RNA polymerase ECF-type sigma factor 1202942 3288927 BF9343_0921 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210652.1 1202391 D 272559 CDS YP_210653.1 60680509 3288919 1202960..1203373 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4348 SWALL:AAO79453 (EMBL:AE016944) (128 aa) fasta scores: E(): 1.4e-29, 70.54% id in 129 aa; hypothetical protein 1203373 3288919 BF9343_0922 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210653.1 1202960 D 272559 CDS YP_210654.1 60680510 3288933 1203402..1203875 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4349 SWALL:AAO79454 (EMBL:AE016944) (155 aa) fasta scores: E(): 7.6e-36, 64.1% id in 156 aa; hypothetical protein 1203875 3288933 BF9343_0923 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210654.1 1203402 D 272559 CDS YP_210655.1 60680511 3288947 complement(1203978..1204763) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4350 SWALL:AAO79455 (EMBL:AE016944) (262 aa) fasta scores: E(): 1.4e-95, 95.78% id in 261 aa, and to Bacillus subtilis hypothetical protein YabN SWALL:YABN_BACSU (SWALL:P37556) (489 aa) fasta scores: E(): 3.1e-41, 47.12% id in 261 aa, and to Clostridium perfringens hypothetical protein CPE2480 SWALL:Q8XHK3 (EMBL:AP003194) (483 aa) fasta scores: E(): 1.3e-39, 47.43% id in 253 aa; hypothetical protein 1204763 3288947 BF9343_0924 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210655.1 1203978 R 272559 CDS YP_210656.1 60680512 3288940 complement(1204769..1205830) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4351 SWALL:AAO79456 (EMBL:AE016944) (355 aa) fasta scores: E(): 6.5e-107, 75.21% id in 351 aa; putative transmembrane zinc-binding protein 1205830 3288940 BF9343_0925 Bacteroides fragilis NCTC 9343 putative transmembrane zinc-binding protein YP_210656.1 1204769 R 272559 CDS YP_210657.1 60680513 3287223 1205947..1208577 1 NC_003228.3 Similar to Thermus thermophilus valyl-tRNA synthetase ValS SWALL:SYV_THETH (SWALL:P96142) (862 aa) fasta scores: E(): 2.9e-114, 39.13% id in 879 aa, and to Bacteroides thetaiotaomicron valyl-tRNA synthetase BT4353 SWALL:AAO79458 (EMBL:AE016944) (879 aa) fasta scores: E(): 0, 85.42% id in 878 aa, and to Fusobacterium nucleatum valyl-tRNA synthetase Fn2011 SWALL:Q8RHK3 (EMBL:AE010503) (887 aa) fasta scores: E(): 1.1e-147, 46.03% id in 895 aa; putative valyl-tRNA synthetase 1208577 valS 3287223 valS Bacteroides fragilis NCTC 9343 putative valyl-tRNA synthetase YP_210657.1 1205947 D 272559 CDS YP_210658.1 60680514 3288951 1208696..1210597 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT4354 SWALL:AAO79459 (EMBL:AE016944) (631 aa) fasta scores: E(): 3.7e-170, 66.29% id in 629 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1264 SWALL:AAO76371 (EMBL:AE016931) (1039 aa) fasta scores: E(): 5.9e-49, 53.9% id in 256 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1833 SWALL:AAO76940 (EMBL:AE016933) (882 aa) fasta scores: E(): 3.4e-47, 55.46% id in 247 aa. This CDS overlaps 31 nucleotides at the C-terminus with the adjacent CDS; putative two-component sensor histidine kinase 1210597 3288951 BF9343_0927 Bacteroides fragilis NCTC 9343 putative two-component sensor histidine kinase YP_210658.1 1208696 D 272559 CDS YP_210659.1 60680515 3288955 complement(1211201..1211803) 1 NC_003228.3 Similar to Bacteroides fragilis fragilis regulatory region RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 2.7e-07, 25.54% id in 184 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4355 SWALL:AAO79460 (EMBL:AE016944) (191 aa) fasta scores: E(): 7.2e-31, 49.46% id in 186 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1053 SWALL:AAO76160 (EMBL:AE016930) (202 aa) fasta scores: E(): 5.6e-24, 38.69% id in 199 aa; putative RNA polymerase ECF-type sigma factor 1211803 3288955 BF9343_0929 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210659.1 1211201 R 272559 CDS YP_210660.1 60680516 3288294 1211887..1212912 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 4.4e-18, 32.93% id in 252 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT4356 SWALL:Q89ZM1 (EMBL:AE016944) (342 aa) fasta scores: E(): 7.7e-45, 40.35% id in 337 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT4706 SWALL:Q89YM5 (EMBL:AE016946) (307 aa) fasta scores: E(): 5.7e-27, 32.99% id in 291 aa; putative anti-sigma factor 1212912 3288294 BF9343_0930 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210660.1 1211887 D 272559 CDS YP_210661.1 60680517 3285389 1213148..1216471 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis outer membrane protein Omp117 SWALL:Q9AF86 (EMBL:AF364409) (1089 aa) fasta scores: E(): 3.9e-53, 27.76% id in 1167 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3750 SWALL:Q8A1B6 (EMBL:AE016942) (866 aa) fasta scores: E(): 6.7e-63, 32.72% id in 874 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4707 SWALL:Q89YM4 (EMBL:AE016946) (1099 aa) fasta scores: E(): 1.1e-47, 28.74% id in 1183 aa; putative outer membrane protein 1216471 3285389 BF9343_0931 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210661.1 1213148 D 272559 CDS YP_210662.1 60680518 3288024 1216485..1218005 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1047 SWALL:AAO76154 (EMBL:AE016930) (514 aa) fasta scores: E(): 1.8e-09, 21.66% id in 540 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3984 SWALL:AAO79089 (EMBL:AE016943) (537 aa) fasta scores: E(): 5.5e-08, 22.2% id in 545 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0318 SWALL:AAO75425 (EMBL:AE016927) (404 aa) fasta scores: E(): 3.8e-07, 26.63% id in 413 aa; hypothetical protein 1218005 3288024 BF9343_0932 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210662.1 1216485 D 272559 CDS YP_210663.1 60680519 3288031 1218084..1219112 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0169 SWALL:AAO75276 (EMBL:AE016926) (351 aa) fasta scores: E(): 5.1e-66, 46.28% id in 350 aa, and to Caenorhabditis elegans hypothetical 38.1 kDa protein f14f9.5 SWALL:Q9GUC9 (EMBL:AF024492) (332 aa) fasta scores: E(): 1.8e-13, 26.76% id in 355 aa; putative endonuclease/exonuclease/phosphatase family protein 1219112 3288031 BF9343_0933 Bacteroides fragilis NCTC 9343 putative endonuclease/exonuclease/phosphatase family protein YP_210663.1 1218084 D 272559 CDS YP_210664.1 60680520 3288087 1219197..1220270 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative secreted protein BT2915 SWALL:AAO78021 (EMBL:AE016938) (324 aa) fasta scores: E(): 2e-13, 27.56% id in 312 aa; hypothetical protein 1220270 3288087 BF9343_0934 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210664.1 1219197 D 272559 CDS YP_210665.1 60680521 3288053 complement(1220474..1221049) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis RNA polymerase ECF-type sigma-factor SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 2.5e-08, 29.18% id in 185 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4355 SWALL:AAO79460 (EMBL:AE016944) (191 aa) fasta scores: E(): 1.6e-44, 64.02% id in 189 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1053 SWALL:AAO76160 (EMBL:AE016930) (202 aa) fasta scores: E(): 2.6e-22, 41.34% id in 179 aa; putative RNA polymerase ECF-type sigma factor 1221049 3288053 BF9343_0935 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210665.1 1220474 R 272559 CDS YP_210666.1 60680522 3286119 1221185..1222192 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 2.8e-16, 30.83% id in 240 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT4356 SWALL:AAO79461 (EMBL:AE016944) (342 aa) fasta scores: E(): 7.4e-72, 57.05% id in 340 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT3749 SWALL:AAO78854 (EMBL:AE016942) (322 aa) fasta scores: E(): 8.5e-35, 38.29% id in 329 aa; putative anti-sigma factor 1222192 3286119 BF9343_0936 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210666.1 1221185 D 272559 CDS YP_210667.1 60680523 3287554 1222361..1225741 1 NC_003228.3 C-terminus is similar to Bacteroides Caccae TonB-linked outer membrane protein OmpW SWALL:Q93FV1 (EMBL:AF305878) (947 aa) fasta scores: E(): 1.1e-62, 29.67% id in 1001 aa, and C-terminus is similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2894 SWALL:AAO78000 (EMBL:AE016937) (1018 aa) fasta scores: E(): 5.1e-86, 31.08% id in 1039 aa, and C-terminus is similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3854 SWALL:AAO78959 (EMBL:AE016942) (1012 aa) fasta scores: E(): 2.3e-77, 32.68% id in 1034 aa and entire protein is similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2461 SWALL:AAO77568 (EMBL:AE016936) (1134 aa) fasta scores: E(): 1e-73, 33.5% id in 1167 aa; putative TonB-dependent outer membrane receptor protein 1225741 3287554 BF9343_0937 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_210667.1 1222361 D 272559 CDS YP_210668.1 60680524 3285936 1225748..1227388 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0451 SWALL:AAO75558 (EMBL:AE016927) (553 aa) fasta scores: E(): 1.1e-21, 26.07% id in 579 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2195 SWALL:AAO77302 (EMBL:AE016935) (580 aa) fasta scores: E(): 3.3e-20, 28.47% id in 576 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0361 SWALL:AAO75468 (EMBL:AE016927) (601 aa) fasta scores: E(): 7.2e-17, 28.17% id in 607 aa; putative outer membrane protein 1227388 3285936 BF9343_0938 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210668.1 1225748 D 272559 CDS YP_210669.1 60680525 3286108 1227405..1228970 1 NC_003228.3 Similar to Klebsiella pneumoniae arylsulfatase precursor AtsA SWALL:Q9X759 (EMBL:AJ131525) (577 aa) fasta scores: E(): 4.9e-13, 24.9% id in 530 aa, and to Bacteroides thetaiotaomicron putative arylsulfatase precursor BT4631 SWALL:AAO79736 (EMBL:AE016946) (520 aa) fasta scores: E(): 1.4e-143, 67.3% id in 520 aa, and to Bacteroides thetaiotaomicron putative secreted sulfatase BT1624 SWALL:AAO76731 (EMBL:AE016932) (515 aa) fasta scores: E(): 4.8e-119, 57.85% id in 503 aa, and to Rattus norvegicus steryl-sulfatase precursor Sts SWALL:STS_RAT (SWALL:P15589) (577 aa) fasta scores: E(): 1.1e-18, 30.83% id in 506 aa; putative arylsulfatase precursor 1228970 3286108 BF9343_0939 Bacteroides fragilis NCTC 9343 putative arylsulfatase precursor YP_210669.1 1227405 D 272559 CDS YP_210670.1 60680526 3285413 1229146..1230702 1 NC_003228.3 Similar to Homo sapiens steryl-sulfatase precursor Sts SWALL:STS_HUMAN (SWALL:P08842) (583 aa) fasta scores: E(): 6.9e-14, 29.6% id in 456 aa, and to Microscilla sp. PRE1 Ms133, putative arylsulfatase SWALL:Q93P98 (EMBL:AF339846) (512 aa) fasta scores: E(): 1.8e-115, 57.28% id in 501 aa, and to Bacteroides thetaiotaomicron arylsulfatase A precursor BT3109 SWALL:Q8A346 (EMBL:AE016939) (508 aa) fasta scores: E(): 1.1e-112, 55.28% id in 483 aa; putative arylsulfatase 1230702 3285413 BF9343_0940 Bacteroides fragilis NCTC 9343 putative arylsulfatase YP_210670.1 1229146 D 272559 CDS YP_210671.1 60680527 3285858 complement(1230782..1231228) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4360 SWALL:AAO79465 (EMBL:AE016945) (148 aa) fasta scores: E(): 4.4e-40, 71.62% id in 148 aa; hypothetical protein 1231228 3285858 BF9343_0941 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210671.1 1230782 R 272559 CDS YP_210672.1 60680528 3285442 complement(1231293..1232393) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4361 SWALL:Q89ZL6 (EMBL:AE016945) (369 aa) fasta scores: E(): 7.1e-76, 55.64% id in 372 aa; hypothetical protein 1232393 3285442 BF9343_0942 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210672.1 1231293 R 272559 CDS YP_210673.1 60680529 3288300 complement(1232513..1235842) 1 NC_003228.3 Similar to Bacillus subtilis preprotein translocase SecA subunit or Div+ SWALL:SECA_BACSU (SWALL:P28366) (841 aa) fasta scores: E(): 9.9e-66, 40.48% id in 946 aa, and to Bacteroides thetaiotaomicron preprotein translocase SecA subunit BT4362 SWALL:AAO79467 (EMBL:AE016945) (1106 aa) fasta scores: E(): 0, 92.79% id in 1110 aa, and to Chlorobium tepidum preprotein translocase SecA subunit or CT1239 SWALL:Q8KD18 (EMBL:AE012884) (1031 aa) fasta scores: E(): 2e-146, 49.01% id in 1114 aa; putative preprotein translocase SecA component 1235842 secA 3288300 secA Bacteroides fragilis NCTC 9343 putative preprotein translocase SecA component YP_210673.1 1232513 R 272559 CDS YP_210674.1 60680530 3285416 complement(1235950..1237524) 1 NC_003228.3 Similar to Fluoribacter gormanii alkaline phosphomonoesterase precursor PafA SWALL:CAD23197 (EMBL:AJ430585) (540 aa) fasta scores: E(): 3.9e-15, 25.22% id in 555 aa, and to Bacteroides thetaiotaomicron putative alkaline phosphatase BT4363 SWALL:AAO79468 (EMBL:AE016945) (524 aa) fasta scores: E(): 7.2e-173, 75.38% id in 524 aa, and to Synechococcus sp. alkaline phosphatase PhoV SWALL:Q55320 (EMBL:Z48801) (550 aa) fasta scores: E(): 2.2e-24, 28.92% id in 529 aa; putative alkaline phosphatase 1237524 3285416 BF9343_0944 Bacteroides fragilis NCTC 9343 putative alkaline phosphatase YP_210674.1 1235950 R 272559 CDS YP_210675.1 60680531 3285252 complement(1237521..1238747) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4364 SWALL:Q89ZL3 (EMBL:AE016945) (395 aa) fasta scores: E(): 2.5e-66, 64.67% id in 402 aa, and to Xanthomonas campestris hypothetical protein Xcc2334 SWALL:Q8P8A9 (EMBL:AE012341) (412 aa) fasta scores: E(): 1.9e-17, 30.57% id in 350 aa; putative transmembrane protein 1238747 3285252 BF9343_0945 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210675.1 1237521 R 272559 CDS YP_210676.1 60680532 3285357 1239342..1240073 1 NC_003228.3 Limited similarity to Bordetella pertussis Bvg accessory factor Baf SWALL:BAF_BORPE (SWALL:Q45338) (267 aa) fasta scores: E(): 0.00035, 30.22% id in 225 aa, and to Bacteroides thetaiotaomicron putative transcription regulator BT4366 SWALL:AAO79471 (EMBL:AE016945) (222 aa) fasta scores: E(): 1.1e-66, 77.92% id in 222 aa, and to Thermotoga maritima hypothetical protein Tm0883 SWALL:Q9WZY5 (EMBL:AE001754) (246 aa) fasta scores: E(): 3.6e-13, 31.27% id in 243 aa; putative regulatory protein 1240073 3285357 BF9343_0946 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_210676.1 1239342 D 272559 CDS YP_210677.1 60680533 3287128 1240060..1241334 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein BT4367 SWALL:AAO79472 (EMBL:AE016945) (431 aa) fasta scores: E(): 6.4e-99, 58.58% id in 437 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1785 SWALL:AAO76892 (EMBL:AE016933) (401 aa) fasta scores: E(): 4.2e-18, 27.18% id in 423 aa; putative outer membrane protein 1241334 3287128 BF9343_0947 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210677.1 1240060 D 272559 CDS YP_210678.1 60680534 3287183 1241380..1242705 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4368 SWALL:Q89ZK9 (EMBL:AE016945) (433 aa) fasta scores: E(): 8.2e-144, 85.21% id in 433 aa; hypothetical protein 1242705 3287183 BF9343_0948 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210678.1 1241380 D 272559 CDS YP_210679.1 60680535 18501134 1241398..1242705 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4368 SWALL:Q89ZK9 (EMBL:AE016945) (433 aa) fasta scores: E(): 8.7e-145, 85.21% id in 433 aa; hypothetical protein 1242705 18501134 BF9343_0949 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210679.1 1241398 D 272559 CDS YP_210680.1 60680536 3287552 1242713..1243327 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4369 SWALL:Q89ZK8 (EMBL:AE016945) (193 aa) fasta scores: E(): 1.1e-49, 67.97% id in 178 aa; hypothetical protein 1243327 3287552 BF9343_0950 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210680.1 1242713 D 272559 CDS YP_210681.1 60680537 3286438 1243330..1244586 1 NC_003228.3 Similar to Streptococcus pneumoniae hemolysin HlyX or SPR1778 SWALL:Q8DNE9 (EMBL:AE008542) (443 aa) fasta scores: E(): 6.1e-30, 30.34% id in 435 aa, and to Bacteroides thetaiotaomicron putative hemolysin BT4370 SWALL:AAO79475 (EMBL:AE016945) (418 aa) fasta scores: E(): 1.4e-135, 87.79% id in 418 aa, and to Streptococcus pneumoniae CBS domain protein SP1963 SWALL:Q97NQ5 (EMBL:AE007486) (443 aa) fasta scores: E(): 6.1e-30, 30.34% id in 435 aa; putative transmembrane CBS domain transporter 1244586 3286438 BF9343_0951 Bacteroides fragilis NCTC 9343 putative transmembrane CBS domain transporter YP_210681.1 1243330 D 272559 CDS YP_210682.1 60680538 3287312 1244707..1246845 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron peptidyl-prolyl cis-trans isomerase BT4371 SWALL:AAO79476 (EMBL:AE016945) (712 aa) fasta scores: E(): 7.7e-207, 79.77% id in 712 aa, and to Chlorobium tepidum peptidyl-prolyl cis-trans isomerase, ppic-type CT0203 SWALL:Q8KFW7 (EMBL:AE012799) (700 aa) fasta scores: E(): 1.5e-10, 21.83% id in 742 aa, and to Acinetobacter sp. ADP1 putative peptidyl-prolyl cis-trans isomerase SWALL:O31248 (EMBL:AJ002316) (622 aa) fasta scores: E(): 0.0025, 20.52% id in 687 aa; hypothetical protein 1246845 3287312 BF9343_0952 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210682.1 1244707 D 272559 CDS YP_210683.1 60680539 3287525 1247022..1248056 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4372 SWALL:AAO79477 (EMBL:AE016945) (345 aa) fasta scores: E(): 2.4e-112, 84.01% id in 344 aa, and to Thermotoga maritima hypothetical protein Tm1715 SWALL:Q9X240 (EMBL:AE001811) (343 aa) fasta scores: E(): 1.4e-40, 38.43% id in 333 aa, and to Aquifex aeolicus hypothetical protein Aq_416 SWALL:O66732 (EMBL:AE000689) (348 aa) fasta scores: E(): 2.5e-40, 37.5% id in 336 aa; hypothetical protein 1248056 3287525 BF9343_0953 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210683.1 1247022 D 272559 CDS YP_210684.1 60680540 3287221 1248131..1249177 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4373 SWALL:Q89ZK4 (EMBL:AE016945) (345 aa) fasta scores: E(): 1.2e-102, 72.77% id in 349 aa; hypothetical protein 1249177 3287221 BF9343_0954 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210684.1 1248131 D 272559 CDS YP_210685.1 60680541 3287273 1249182..1250279 1 NC_003228.3 Similar to Escherichia coli 4-hydroxythreonine-4-phosphate dehydrogenase PdxA or B0052 SWALL:PDXA_ECOLI (SWALL:P19624) (329 aa) fasta scores: E(): 6.3e-33, 36.06% id in 330 aa, and to Bacteroides thetaiotaomicron 4-hydroxythreonine-4-phosphate dehydrogenase BT4374 SWALL:AAO79479 (EMBL:AE016945) (364 aa) fasta scores: E(): 2.2e-124, 87.36% id in 364 aa, and to Oceanobacillus iheyensis 4-hydroxythreonine-4-phosphate dehydrogenase PdxA or ob1013 SWALL:Q8CUU4 (EMBL:AP004596) (332 aa) fasta scores: E(): 1.7e-37, 38.88% id in 324 aa; putative 4-hydroxythreonine-4-phosphate dehydrogenase 1250279 3287273 BF9343_0955 Bacteroides fragilis NCTC 9343 putative 4-hydroxythreonine-4-phosphate dehydrogenase YP_210685.1 1249182 D 272559 CDS YP_210686.1 60680542 3287392 1250304..1251530 1 NC_003228.3 Similar to Myxococcus xanthus transcriptional regulatory SasR SWALL:Q9EZZ3 (EMBL:AF273214) (477 aa) fasta scores: E(): 2e-38, 44.04% id in 277 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT4375 SWALL:AAO79480 (EMBL:AE016945) (413 aa) fasta scores: E(): 2.3e-126, 87.68% id in 414 aa, and to Porphyromonas gingivalis immunoreactive 47 kDa antigen PG120 SWALL:Q9X6S7 (EMBL:AF144640) (417 aa) fasta scores: E(): 3.4e-81, 57.51% id in 419 aa; putative sigma-54 dependent transcriptional regulator 1251530 3287392 BF9343_0956 Bacteroides fragilis NCTC 9343 putative sigma-54 dependent transcriptional regulator YP_210686.1 1250304 D 272559 CDS YP_210687.1 60680543 3287547 1251517..1252038 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4376 SWALL:AAO79481 (EMBL:AE016945) (175 aa) fasta scores: E(): 1.9e-52, 82.28% id in 175 aa; hypothetical protein 1252038 3287547 BF9343_0957 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210687.1 1251517 D 272559 CDS YP_210688.1 60680544 3287561 1252044..1252799 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4377 SWALL:AAO79482 (EMBL:AE016945) (264 aa) fasta scores: E(): 5.8e-41, 68.42% id in 266 aa; hypothetical protein 1252799 3287561 BF9343_0958 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210688.1 1252044 D 272559 CDS YP_210689.1 60680545 3288668 1252804..1253184 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4378 SWALL:AAO79483 (EMBL:AE016945) (131 aa) fasta scores: E(): 2.4e-33, 81.25% id in 128 aa, and to Chlorobium tepidum hypothetical protein CT0737 SWALL:Q8KEF2 (EMBL:AE012844) (126 aa) fasta scores: E(): 5.5e-06, 34.92% id in 126 aa, and to Campylobacter jejuni hypothetical protein SecG or CJ0235C SWALL:Q9PIQ9 (EMBL:AL139074) (123 aa) fasta scores: E(): 0.00049, 29.06% id in 117 aa, and to Helicobacter pylori J99 protein-export membrane protein SecG or jhp1176 SWALL:SECG_HELPJ (SWALL:Q9ZJX2) (198 aa) fasta scores: E(): 0.004, 23.96% id in 121 aa; possible protein-export transmembrane protein 1253184 3288668 BF9343_0959 Bacteroides fragilis NCTC 9343 possible protein-export transmembrane protein YP_210689.1 1252804 D 272559 CDS YP_210690.1 60680546 3288092 1253355..1254743 1 NC_003228.3 C-terminus has limited similarity to the N-terminus of Oryza sativa major facilitator superfamily antiporter MFS2 SWALL:Q8H6D5 (EMBL:AF543419) (470 aa) fasta scores: E(): 0.0091, 25.44% id in 224 aa, and entire protein is similar to Bacteroides thetaiotaomicron putative oxalate:formate antiporter BT4379 SWALL:AAO79484 (EMBL:AE016945) (462 aa) fasta scores: E(): 6.8e-170, 90.47% id in 462 aa, and to Drosophila melanogaster Cg8602 protein cg8602 SWALL:Q9VS47 (EMBL:AE003559) (478 aa) fasta scores: E(): 4.4e-25, 27.61% id in 402 aa; putative transmembrane transporter 1254743 3288092 BF9343_0960 Bacteroides fragilis NCTC 9343 putative transmembrane transporter YP_210690.1 1253355 D 272559 CDS YP_210691.1 60680547 3288849 1254750..1255103 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4380 SWALL:AAO79485 (EMBL:AE016945) (115 aa) fasta scores: E(): 7e-28, 67.56% id in 111 aa, and to Thermoanaerobacter tengcongensis hypothetical protein TTE0160 SWALL:Q8RD86 (EMBL:AE012989) (114 aa) fasta scores: E(): 7.6e-05, 33.64% id in 107 aa; hypothetical protein 1255103 3288849 BF9343_0961 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210691.1 1254750 D 272559 CDS YP_210692.1 60680548 3288754 complement(1255237..1256292) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4382 SWALL:AAO79487 (EMBL:AE016945) (354 aa) fasta scores: E(): 2e-90, 75.14% id in 354 aa; hypothetical protein 1256292 3288754 BF9343_0962 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210692.1 1255237 R 272559 CDS YP_210693.1 60680549 3288869 complement(1256365..1257876) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative sugar kinase BT4383 SWALL:AAO79488 (EMBL:AE016945) (503 aa) fasta scores: E(): 6.5e-169, 83.89% id in 503 aa, and to Thermoanaerobacter tengcongensis predicted sugar kinase TTE2170 SWALL:Q8R858 (EMBL:AE013164) (512 aa) fasta scores: E(): 2.1e-51, 35.07% id in 516 aa, and to Clostridium tetani conserved protein CTC02515 SWALL:AAO36976 (EMBL:AE015944) (502 aa) fasta scores: E(): 5.9e-50, 33.86% id in 505 aa; putative YjeF-related sugar kinase 1257876 3288869 BF9343_0963 Bacteroides fragilis NCTC 9343 putative YjeF-related sugar kinase YP_210693.1 1256365 R 272559 CDS YP_210694.1 60680550 3288865 complement(1257920..1259260) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 35.7 kDa protein SWALL:Q9XDL0 (EMBL:AF048749) (322 aa) fasta scores: E(): 2.1e-117, 100% id in 322 aa, and similar to previously sequenced Bacteroides fragilis hypothetical 48.4 kDa protein WcfT SWALL:Q9F767 (EMBL:AF285774) (427 aa) fasta scores: E(): 2.5e-49, 34.41% id in 401 aa, and to Caulobacter crescentus hypothetical protein Cc0651 SWALL:Q9AAF0 (EMBL:AE005741) (436 aa) fasta scores: E(): 6.2e-45, 34.69% id in 415 aa; putative transmembrane protein 1259260 3288865 BF9343_0964 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210694.1 1257920 R 272559 CDS YP_210695.1 60680551 3288909 1259566..1260201 1 NC_003228.3 Similar to Streptomyces sp. TP-A0274 methyltransferase StamB SWALL:BAC55218 (EMBL:AB088119) (280 aa) fasta scores: E(): 1.2e-07, 37.62% id in 101 aa, and identical to previously sequenced Bacteroides fragilis putative methyl transferase SWALL:Q9XDK9 (EMBL:AF048749) (211 aa) fasta scores: E(): 3.9e-89, 100% id in 211 aa, and similar to Bacteroides thetaiotaomicron putative methyl transferase BT1855 SWALL:AAO76962 (EMBL:AE016933) (209 aa) fasta scores: E(): 6e-53, 62.31% id in 207 aa; putative methyltransferase 1260201 3288909 BF9343_0965 Bacteroides fragilis NCTC 9343 putative methyltransferase YP_210695.1 1259566 D 272559 CDS YP_210696.1 60680552 3285775 1260915..1261433 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical 12.8 kDa protein SWALL:Q9XDK8 (EMBL:AF048749) (113 aa) fasta scores: E(): 1.1e-41, 100% id in 113 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT0376 SWALL:AAO75483 (EMBL:AE016927) (192 aa) fasta scores: E(): 4.9e-14, 43.47% id in 115 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1725 SWALL:AAO76832 (EMBL:AE016933) (192 aa) fasta scores: E(): 1e-13, 43.36% id in 113 aa; putative transcriptional regulator 1261433 upcY 3285775 upcY Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_210696.1 1260915 D 272559 CDS YP_210697.1 60680553 3288843 1261616..1262008 1 NC_003228.3 Similar to Bacteroides fragilis putative transcriptional regulator UpcZ SWALL:Q9XDK7 (EMBL:AF048749) (130 aa) fasta scores: E(): 7.4e-46, 100% id in 130 aa, and to Bacteroides fragilis UpcZ SWALL:Q9RGK5 (EMBL:AF125164) (130 aa) fasta scores: E(): 8.6e-46, 99.23% id in 130 aa, and to Bacteroides fragilis UpaZ SWALL:Q93QW5 (EMBL:AF189282) (157 aa) fasta scores: E(): 9.4e-13, 39.16% id in 120 aa; putative transcriptional regulator 1262008 upcZ 3288843 upcZ Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_210697.1 1261616 D 272559 CDS YP_210698.1 60680554 3289337 1262011..1262898 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis glucose-1-phosphate thymidyl transferase RmlA SWALL:Q9XDK6 (EMBL:AF048749) (295 aa) fasta scores: E(): 1.5e-114, 100% id in 295 aa, and similar to previously sequenced Bacteroides fragilis glucose-1-phosphate thymidyltransferase RmlA SWALL:Q9RGK4 (EMBL:AF125164) (294 aa) fasta scores: E(): 5.4e-106, 92.17% id in 294 aa, and to Bacteroides thetaiotaomicron glucose-1-phosphate thymidylyltransferase BT0463 SWALL:AAO75570 (EMBL:AE016927) (295 aa) fasta scores: E(): 7.8e-102, 88.81% id in 295 aa; glucose-1-phosphate thymidyl transferase 1262898 rmlA2 3289337 rmlA2 Bacteroides fragilis NCTC 9343 glucose-1-phosphate thymidyl transferase YP_210698.1 1262011 D 272559 CDS YP_210699.1 60680555 3289284 1262914..1263462 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis dTDP-6-deoxy-D-glucose-3,5 epimerase RmlC SWALL:Q9XDK5 (EMBL:AF048749) (182 aa) fasta scores: E(): 1.8e-74, 100% id in 182 aa, and to Bacteroides thetaiotaomicron dTDP-4-dehydrorhamnose 3,5-epimerase BT1338 SWALL:AAO76445 (EMBL:AE016931) (182 aa) fasta scores: E(): 7.1e-62, 84.09% id in 176 aa, and to Bacteroides thetaiotaomicron dTDP-4-dehydrorhamnose 3,5-epimerase BT0464 SWALL:AAO75571 (EMBL:AE016927) (189 aa) fasta scores: E(): 9.7e-60, 82.38% id in 176 aa; dTDP-6-deoxy-D-glucose-3,5 epimerase 1263462 rmlC1 3289284 rmlC1 Bacteroides fragilis NCTC 9343 dTDP-6-deoxy-D-glucose-3,5 epimerase YP_210699.1 1262914 D 272559 CDS YP_210700.1 60680556 3287195 1263481..1264002 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative acetyl transferase WcfA SWALL:Q9XDK4 (EMBL:AF048749) (173 aa) fasta scores: E(): 4.5e-69, 100% id in 173 aa, and to Lactococcus lactis acetyltransferase Ynca or ll1287 SWALL:Q9CG23 (EMBL:AE006361) (203 aa) fasta scores: E(): 1.1e-14, 41.09% id in 146 aa, and to Pasteurella multocida hypothetical protein Pm1056 pm1056 SWALL:Q9CLZ3 (EMBL:AE006146) (203 aa) fasta scores: E(): 4.3e-14, 46.45% id in 127 aa; putative acetyl transferase 1264002 wcfA 3287195 wcfA Bacteroides fragilis NCTC 9343 putative acetyl transferase YP_210700.1 1263481 D 272559 CDS YP_210701.1 60680557 3287402 1263995..1265530 1 NC_003228.3 Similar to Escherichia coli O-antigen flippase Wzx SWALL:AAO39697 (EMBL:AY208937) (464 aa) fasta scores: E(): 0.00079, 19.65% id in 468 aa, and to previously sequenced Bacteroides fragilis putative flippase Wzx SWALL:Q9XDK3 (EMBL:AF048749) (511 aa) fasta scores: E(): 8.6e-198, 100% id in 511 aa, and to Bacteroides thetaiotaomicron putative flippase BT1354 SWALL:AAO76461 (EMBL:AE016931) (513 aa) fasta scores: E(): 2.5e-110, 52.83% id in 511 aa; putative O-antigen flippase 1265530 wzx2 3287402 wzx2 Bacteroides fragilis NCTC 9343 putative O-antigen flippase YP_210701.1 1263995 D 272559 CDS YP_210702.1 60680558 3287270 1265534..1266397 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative fucosyl transferase WcfB SWALL:Q9XDK2 (EMBL:AF048749) (287 aa) fasta scores: E(): 1.3e-119, 100% id in 287 aa, and to Vibrio cholerae WblA protein SWALL:O87157 (EMBL:AB012957) (281 aa) fasta scores: E(): 5.7e-19, 32.74% id in 281 aa, and to Escherichia coli putative fucosyltransferase WbgN SWALL:Q8VQ46 (EMBL:AF461121) (290 aa) fasta scores: E(): 6.4e-12, 37.01% id in 181 aa; putative fucosyl transferase 1266397 wcfB 3287270 wcfB Bacteroides fragilis NCTC 9343 putative fucosyl transferase YP_210702.1 1265534 D 272559 CDS YP_210703.1 60680559 3287409 1266373..1267533 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative glycosyl transferase WcfC SWALL:Q9XDK1 (EMBL:AF048749) (386 aa) fasta scores: E(): 1.5e-151, 100% id in 386 aa, and to Clostridium acetobutylicum glycosyltransferase CAC2313 SWALL:Q97GQ3 (EMBL:AE007732) (377 aa) fasta scores: E(): 7.1e-24, 32.44% id in 336 aa, and to Bacillus halodurans hypothetical protein BH3712 BH3712 SWALL:Q9K6L7 (EMBL:AP001519) (395 aa) fasta scores: E(): 4.8e-10, 23.75% id in 362 aa; putative glycosyltransferase 1267533 wcfC 3287409 wcfC Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_210703.1 1266373 D 272559 CDS YP_210704.1 60680560 3288303 1267551..1268207 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative acetyl transferase WcfD SWALL:Q9XDK0 (EMBL:AF048749) (218 aa) fasta scores: E(): 2.5e-87, 100% id in 218 aa, and to Aeromonas hydrophila acetyl transferase SWALL:Q8KXE9 (EMBL:AF343089) (199 aa) fasta scores: E(): 5.1e-21, 45.34% id in 161 aa, and to Aeromonas hydrophila O-acetyl transferase SWALL:Q8KNM6 (EMBL:AF148126) (199 aa) fasta scores: E(): 6e-21, 45.34% id in 161 aa; putative acetyltransferase 1268207 wcfD 3288303 wcfD Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_210704.1 1267551 D 272559 CDS YP_210705.1 60680561 3287384 1268208..1269314 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative polymerase Wzy SWALL:Q9XDJ9 (EMBL:AF048749) (365 aa) fasta scores: E(): 1.9e-133, 99.18% id in 368 aa, and to Clostridium perfringens capsular polysaccharide biosynthesis protein CPE0478 SWALL:Q8XN60 (EMBL:AP003186) (355 aa) fasta scores: E(): 0.00013, 24.8% id in 379 aa, and to Shigella boydii O-antigen polymerase Wzy SWALL:Q93CS5 (EMBL:AF402314) (350 aa) fasta scores: E(): 0.00029, 23.67% id in 376 aa; putative polysaccharide polymerase 1269314 wzy2 3287384 wzy2 Bacteroides fragilis NCTC 9343 putative polysaccharide polymerase YP_210705.1 1268208 D 272559 CDS YP_210706.1 60680562 3287376 1269311..1270186 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative glycosyl transferase WcfE SWALL:Q9XDJ8 (EMBL:AF048749) (291 aa) fasta scores: E(): 3.3e-118, 100% id in 291 aa, and to Methanosarcina acetivorans glycosyltransferase ma2170 SWALL:Q8TNV8 (EMBL:AE010903) (350 aa) fasta scores: E(): 6.5e-08, 27.1% id in 214 aa, and to Archaeoglobus fulgidus glycosyl transferase af0321 SWALL:O29924 (EMBL:AE001082) (324 aa) fasta scores: E(): 8.2e-08, 26.8% id in 235 aa; putative glycosyltransferase 1270186 wcfE 3287376 wcfE Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_210706.1 1269311 D 272559 CDS YP_210707.1 60680563 3287373 1270195..1271472 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative UDP-glucose-6 dehydrogenase WcfF SWALL:Q9XDJ7 (EMBL:AF048749) (425 aa) fasta scores: E(): 4.5e-161, 100% id in 425 aa, and to Escherichia coli putative udp-glucose-6-dehydrogenase wbqA SWALL:AAO39690 (EMBL:AY208937) (426 aa) fasta scores: E(): 4.4e-92, 53.27% id in 428 aa, and to Shigella sonnei ORF1s wbgt or ORF1G SWALL:Q9S0U5 (EMBL:AB028135) (437 aa) fasta scores: E(): 1.1e-91, 56.6% id in 424 aa; putative UDP-glucose-6 dehydrogenase 1271472 wcfF 3287373 wcfF Bacteroides fragilis NCTC 9343 putative UDP-glucose-6 dehydrogenase YP_210707.1 1270195 D 272559 CDS YP_210708.1 60680564 3287258 1271459..1272592 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative glycosyl transferase WcfG SWALL:Q9XDJ6 (EMBL:AF048749) (377 aa) fasta scores: E(): 3.9e-157, 100% id in 377 aa, and to Bacteroides fragilis putative glycosyltransferase wcgE SWALL:Q9RGJ7 (EMBL:AF125164) (363 aa) fasta scores: E(): 5.9e-09, 29.68% id in 219 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT2938 SWALL:AAO78044 (EMBL:AE016938) (408 aa) fasta scores: E(): 6.9e-08, 26.1% id in 249 aa; putative glycosyltransferase 1272592 wcfG 3287258 wcfG Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_210708.1 1271459 D 272559 CDS YP_210709.1 60680565 3287281 1272585..1273364 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative deacetylase WcfH SWALL:Q9XDJ5 (EMBL:AF048749) (259 aa) fasta scores: E(): 1.9e-113, 100% id in 259 aa, and to Leptospira interrogans polysaccharide deacetylase-like protein la1638 SWALL:Q8F5M9 (EMBL:AE011341) (287 aa) fasta scores: E(): 6.7e-08, 26.8% id in 235 aa; putative deacetylase 1273364 wcfH 3287281 wcfH Bacteroides fragilis NCTC 9343 putative deacetylase YP_210709.1 1272585 D 272559 CDS YP_210710.1 60680566 3287380 1273404..1274642 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative glycosyl transferase WcfI SWALL:Q9XDJ4 (EMBL:AF048749) (407 aa) fasta scores: E(): 3.2e-164, 99.5% id in 407 aa, and to Vibrio cholerae O37 glysosyl-transferase SWALL:Q8L354 (EMBL:AF390573) (409 aa) fasta scores: E(): 4.7e-22, 27.07% id in 325 aa, and to Rickettsia prowazekii hypothetical protein Rp336 rp336 SWALL:Q9ZDJ2 (EMBL:AJ235271) (407 aa) fasta scores: E(): 7.6e-20, 27.81% id in 338 aa; putative glycosyltransferase 1274642 wcfI 3287380 wcfI Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_210710.1 1273404 D 272559 CDS YP_210711.1 60680567 3287555 1274659..1275423 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative glycosyl transferase wcfJ SWALL:Q9XDJ3 (EMBL:AF048749) (254 aa) fasta scores: E(): 2.6e-99, 100% id in 254 aa, and to Helicobacter pylori J99 putative jhp0094 SWALL:Q9ZMX1 (EMBL:AE001448) (260 aa) fasta scores: E(): 1.4e-42, 47.6% id in 250 aa, and to Helicobacter pylori hypothetical protein Hp0102 hp0102 SWALL:O24928 (EMBL:AE000532) (259 aa) fasta scores: E(): 7e-42, 46.98% id in 249 aa; putative glycosyltransferase 1275423 wcfJ 3287555 wcfJ Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_210711.1 1274659 D 272559 CDS YP_210712.1 60680568 3287437 1275420..1276439 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative epimerase/dehydratase WcfK SWALL:Q9XDJ2 (EMBL:AF048749) (339 aa) fasta scores: E(): 5.1e-135, 100% id in 339 aa, and to previously sequenced Bacteroides fragilis putative dehydratase WcgW SWALL:Q9F749 (EMBL:AF285774) (335 aa) fasta scores: E(): 1.7e-112, 84.07% id in 339 aa, and to Pseudomonas aeruginosa protein similar to NAD dependent epimerase/dehydratase family SWALL:Q8KHX6 (EMBL:AF498401) (317 aa) fasta scores: E(): 7.1e-10, 28.57% id in 343 aa; putative epimerase/dehydratase 1276439 wcfK 3287437 wcfK Bacteroides fragilis NCTC 9343 putative epimerase/dehydratase YP_210712.1 1275420 D 272559 CDS YP_210713.1 60680569 3287264 1276443..1277399 1 NC_003228.3 Similar to Bacteroides fragilis putative UDP-GlcNac:undecaprenylphosphate GlcNac-1-phosphate transferase WcfL SWALL:Q9XDJ1 (EMBL:AF048749) (318 aa) fasta scores: E(): 3.8e-130, 100% id in 318 aa, and to Bacteroides fragilis putative undpp-quinac-p-transferase wcgX SWALL:Q9F748 (EMBL:AF285774) (316 aa) fasta scores: E(): 4.7e-111, 85.62% id in 313 aa, and to Bacteroides thetaiotaomicron putative udp-glcnac:undecaprenylphosphate glcnac-1-phosphate transferase BT0396 SWALL:AAO75503 (EMBL:AE016927) (329 aa) fasta scores: E(): 7.5e-68, 55.34% id in 318 aa; putative phosphate transferase 1277399 wcfL 3287264 wcfL Bacteroides fragilis NCTC 9343 putative phosphate transferase YP_210713.1 1276443 D 272559 CDS YP_210714.1 60680570 3288884 complement(1277500..1279014) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 57.6 kDa protein SWALL:Q9XDJ0 (EMBL:AF048749) (504 aa) fasta scores: E(): 1.1e-211, 100% id in 504 aa, and to Bacteroides fragilis hypothetical 57.5 kDa protein SWALL:Q9RGI3 (EMBL:AF125164) (504 aa) fasta scores: E(): 2.4e-210, 99.4% id in 504 aa, and to Caulobacter crescentus hypothetical protein Cc1782 CC1782 SWALL:Q9A7E1 (EMBL:AE005852) (381 aa) fasta scores: E(): 0.084, 28.86% id in 194 aa; putative iron-regulated transmembrane protein 1279014 3288884 BF9343_0984 Bacteroides fragilis NCTC 9343 putative iron-regulated transmembrane protein YP_210714.1 1277500 R 272559 CDS YP_210715.1 60680571 3288915 complement(1279028..1279672) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 23.1 kDa protein SWALL:Q9XDI9 (EMBL:AF048749) (214 aa) fasta scores: E(): 6.2e-83, 100% id in 214 aa, and to previously sequenced Bacteroides fragilis hypothetical 17.4 kDa protein SWALL:Q9RGI2 (EMBL:AF125164) (162 aa) fasta scores: E(): 1.5e-61, 100% id in 162 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0497 SWALL:AAO75604 (EMBL:AE016928) (220 aa) fasta scores: E(): 1.4e-07, 27.18% id in 217 aa; conserved hypothetical lipoprotein 1279672 3288915 BF9343_0985 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_210715.1 1279028 R 272559 CDS YP_210716.1 60680572 3288913 complement(1279689..1281752) 1 NC_003228.3 Similar to Porphyromonas gingivalis hemin-regulated protein HemR SWALL:P72198 (EMBL:U54787) (424 aa) fasta scores: E(): 1.8e-13, 38.98% id in 177 aa, and identical to Bacteroides fragilis putative TonB-dependent outer membrane receptor protein SWALL:Q9XDI8 (EMBL:AF048749) (687 aa) fasta scores: E(): 0, 100% id in 687 aa, and similar to Porphyromonas gingivalis hypothetical TonB-linked outer membrane receptor PG13 SWALL:Q9KIB0 (EMBL:AF237558) (757 aa) fasta scores: E(): 4.9e-43, 31.42% id in 697 aa; putative TonB-dependent outer membrane receptor protein 1281752 3288913 BF9343_0986 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_210716.1 1279689 R 272559 CDS YP_210717.1 60680573 3285509 1282000..1282536 1 NC_003228.3 Similar to Salmonella typhimurium hypoxanthine phosphoribosyltransferase Hpt or STM0170 SWALL:HPRT_SALTY (SWALL:O33799) (178 aa) fasta scores: E(): 9.1e-19, 38.69% id in 168 aa, and identical to Bacteroides fragilis putative hypoxanthine guanine phosphoribosyltransferase HgpT SWALL:Q9XDI7 (EMBL:AF048749) (178 aa) fasta scores: E(): 9.3e-63, 100% id in 178 aa, and similar to Bacteroides thetaiotaomicron hypoxanthine-guanine phosphoribosyltransferase BT4386 SWALL:AAO79491 (EMBL:AE016945) (178 aa) fasta scores: E(): 2.6e-58, 92.13% id in 178 aa; putative hypoxanthine guanine phosphoribosyltransferase 1282536 3285509 BF9343_0987 Bacteroides fragilis NCTC 9343 putative hypoxanthine guanine phosphoribosyltransferase YP_210717.1 1282000 D 272559 CDS YP_210718.1 60680574 3288922 1282592..1283161 1 NC_003228.3 Similar to Gallus gallus adenylate kinase isoenzyme 1 Ak1 SWALL:KAD1_CHICK (SWALL:P05081) (194 aa) fasta scores: E(): 7.3e-25, 42.78% id in 187 aa, and to Bacteroides thetaiotaomicron adenylate kinase BT4387 SWALL:AAO79492 (EMBL:AE016945) (189 aa) fasta scores: E(): 1.7e-57, 88.88% id in 189 aa, and to Caulobacter crescentus adenylate kinase Adk or CC1269 SWALL:KAD_CAUCR (SWALL:Q9A8T2) (191 aa) fasta scores: E(): 1.4e-27, 46.23% id in 186 aa; putative adenylate kinase 1283161 3288922 BF9343_0988 Bacteroides fragilis NCTC 9343 putative adenylate kinase YP_210718.1 1282592 D 272559 CDS YP_210719.3 589285993 3286419 1283245..1284417 1 NC_003228.3 Similar to Bacillus subtilis Spo0b-associated GTP-binding protein Obg or BSU27920 SWALL:OBG_BACSU (SWALL:P20964) (428 aa) fasta scores: E(): 1.6e-47, 42.01% id in 388 aa, and to Bacteroides thetaiotaomicron GTP-binding protein BT4388 SWALL:AAO79493 (EMBL:AE016945) (388 aa) fasta scores: E(): 3e-128, 93.29% id in 388 aa, and to Chlorobium tepidum GTP-binding protein Obg or CT2213 SWALL:Q8KAF0 (EMBL:AE012967) (335 aa) fasta scores: E(): 1.6e-65, 60.49% id in 324 aa; putative Spo0B-related GTP-binding protein 1284417 obg 3286419 obg Bacteroides fragilis NCTC 9343 putative Spo0B-related GTP-binding protein YP_210719.3 1283245 D 272559 CDS YP_210720.1 60680576 3288931 1284414..1285226 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4389 SWALL:AAO79494 (EMBL:AE016945) (270 aa) fasta scores: E(): 4.2e-74, 67.65% id in 269 aa, and to Myxococcus xanthus hypothetical protein SWALL:AAO22912 (EMBL:AY204472) (253 aa) fasta scores: E(): 4.3e-21, 35.82% id in 254 aa, and to Brucella melitensis hypothetical cytosolic protein Bmei0486 SWALL:Q8YIF8 (EMBL:AE009491) (265 aa) fasta scores: E(): 1.5e-20, 33.99% id in 253 aa; hypothetical protein 1285226 3288931 BF9343_0990 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210720.1 1284414 D 272559 CDS YP_210721.1 60680577 3288921 1285248..1285913 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4390 SWALL:AAO79495 (EMBL:AE016945) (221 aa) fasta scores: E(): 1.5e-67, 81.9% id in 221 aa, and to Sulfolobus solfataricus hypothetical protein SSO0658 or C09_009 SWALL:Q9UX48 (EMBL:Y18930) (224 aa) fasta scores: E(): 5.2e-12, 33.33% id in 213 aa, and to Bacillus halodurans hypothetical protein BH1019 SWALL:Q9KE39 (EMBL:AP001510) (224 aa) fasta scores: E(): 2.5e-11, 30.27% id in 218 aa; hypothetical protein 1285913 3288921 BF9343_0991 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210721.1 1285248 D 272559 CDS YP_210722.1 60680578 3289394 1285925..1286656 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative metalloendopeptidase BT4391 SWALL:Q89ZI6 (EMBL:AE016945) (212 aa) fasta scores: E(): 5.7e-52, 70.14% id in 201 aa, and to Bacteroides thetaiotaomicron putative peptidase BT3926 SWALL:Q8A0U5 (EMBL:AE016942) (290 aa) fasta scores: E(): 1.1e-16, 43.87% id in 155 aa, and to Rhizobium meliloti hypothetical transmembrane protein SMC00539 r01744 or SMC00539 SWALL:Q92KB3 (EMBL:AL591788) (413 aa) fasta scores: E(): 5.1e-11, 39.55% id in 134 aa; putative M23/M37-family peptidase 1286656 3289394 BF9343_0992 Bacteroides fragilis NCTC 9343 putative M23/M37-family peptidase YP_210722.1 1285925 D 272559 CDS YP_210723.1 60680579 3288932 complement(1286595..1287779) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2758 SWALL:AAO77864 (EMBL:AE016937) (389 aa) fasta scores: E(): 5.3e-47, 34.91% id in 401 aa; hypothetical protein 1287779 3288932 BF9343_0993 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210723.1 1286595 R 272559 CDS YP_210724.1 60680580 3288935 complement(1287898..1289052) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4399 SWALL:AAO79504 (EMBL:AE016945) (383 aa) fasta scores: E(): 9.3e-108, 71.01% id in 383 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1122 SWALL:AAO76229 (EMBL:AE016930) (384 aa) fasta scores: E(): 1.5e-55, 43.1% id in 348 aa, and to Pseudomonas putida conserved hypothetical protein PP2021 SWALL:AAN67635 (EMBL:AE016781) (376 aa) fasta scores: E(): 1e-38, 36.38% id in 360 aa; hypothetical protein 1289052 3288935 BF9343_0994 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210724.1 1287898 R 272559 CDS YP_210725.1 60680581 3288937 complement(1289423..1289770) 1 NC_003228.3 no significant database matches; hypothetical protein 1289770 3288937 BF9343_0995 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210725.1 1289423 R 272559 CDS YP_210726.1 60680582 3285169 1294191..1295255 1 NC_003228.3 Similar to Escherichia coli DNA polymerase IV DinB or DinP or B0231 SWALL:DPO4_ECOLI (SWALL:Q47155) (351 aa) fasta scores: E(): 1.9e-43, 40.7% id in 339 aa, and to Bacteroides thetaiotaomicron DNA damage-inducible protein BT4409 SWALL:Q89ZG8 (EMBL:AE016945) (353 aa) fasta scores: E(): 8.8e-124, 87.78% id in 352 aa, and to Rhizobium meliloti DNA polymerase IV 2 DinB2 or RA1274 or SMA2355 SWALL:DP42_RHIME (SWALL:Q92XH8) (354 aa) fasta scores: E(): 2.4e-63, 53.93% id in 330 aa; putative DNA polymerase IV 1295255 dinB 3285169 dinB Bacteroides fragilis NCTC 9343 putative DNA polymerase IV YP_210726.1 1294191 D 272559 CDS YP_210727.1 60680583 3288938 1295367..1295795 1 NC_003228.3 no significant database matches; hypothetical protein 1295795 3288938 BF9343_0998 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210727.1 1295367 D 272559 CDS YP_210728.1 60680584 3288091 complement(1295918..1298596) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4412 SWALL:Q89ZG5 (EMBL:AE016945) (905 aa) fasta scores: E(): 8.6e-146, 72.92% id in 916 aa, and to Pirellula sp similar to polyhydroxyalkanoate depolymerase rb10165 SWALL:CAD78738 (EMBL:BX294151) (1048 aa) fasta scores: E(): 1e-18, 28.86% id in 433 aa; possible transglutaminase-family protein 1298596 3288091 BF9343_0999 Bacteroides fragilis NCTC 9343 possible transglutaminase-family protein YP_210728.1 1295918 R 272559 CDS YP_210729.1 60680585 3285196 complement(1298836..1300431) 1 NC_003228.3 Similar to Streptococcus gordonii arginine-ornithine antiporter ArcD SWALL:Q8GND2 (EMBL:AF534569) (504 aa) fasta scores: E(): 3.2e-18, 30.35% id in 537 aa, and to Escherichia coli O6 hypothetical protein c5347 SWALL:Q8FAE2 (EMBL:AE016771) (482 aa) fasta scores: E(): 3.3e-25, 30.49% id in 528 aa, and to Salmonella typhi putative membrane protein STY4802 or t4498 SWALL:Q8Z128 (EMBL:AL627283) (467 aa) fasta scores: E(): 4.2e-25, 31.19% id in 529 aa; putative C4-dicarboxylate anaerobic carrier 1300431 3285196 BF9343_1000 Bacteroides fragilis NCTC 9343 putative C4-dicarboxylate anaerobic carrier YP_210729.1 1298836 R 272559 CDS YP_210730.1 60680586 3288954 1300651..1300785 1 NC_003228.3 no significant database matches; hypothetical protein 1300785 3288954 BF9343_1001 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210730.1 1300651 D 272559 CDS YP_210731.1 60680587 3288064 1300950..1301333 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4413 SWALL:Q89ZG4 (EMBL:AE016945) (145 aa) fasta scores: E(): 0.00013, 34.48% id in 145 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4640 SWALL:Q89YU1 (EMBL:AE016946) (146 aa) fasta scores: E(): 4.7, 32.65% id in 147 aa; hypothetical protein 1301333 3288064 BF9343_1002 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210731.1 1300950 D 272559 CDS YP_210732.1 60680588 3288050 1301396..1301914 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4414 SWALL:Q89ZG3 (EMBL:AE016945) (183 aa) fasta scores: E(): 1.2e-28, 53.8% id in 171 aa; hypothetical protein 1301914 3288050 BF9343_1003 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210732.1 1301396 D 272559 CDS YP_210733.1 60680589 3287841 1301926..1303140 1 NC_003228.3 Similar to Propionigenium modestum methylmalonyl-CoA decarboxylase, beta-subunit MmdB SWALL:O54031 (EMBL:AJ002015) (395 aa) fasta scores: E(): 1.3e-27, 31% id in 387 aa, and to Bacteroides thetaiotaomicron putative decarboxylase beta subunit BT4415 SWALL:AAO79520 (EMBL:AE016945) (404 aa) fasta scores: E(): 3.7e-144, 92.82% id in 404 aa, and to Malonomonas rubra putative carboxybiotin decarboxylase subunit of malonate decarboxylase MadB SWALL:O06923 (EMBL:U87980) (401 aa) fasta scores: E(): 3.2e-80, 53.04% id in 394 aa; putative transmembrane methylmalonyl-CoA/oxaloacetate decarboxylase, beta-subunit 1303140 mmdB 3287841 mmdB Bacteroides fragilis NCTC 9343 putative transmembrane methylmalonyl-CoA/oxaloacetate decarboxylase, beta-subunit YP_210733.1 1301926 D 272559 CDS YP_210734.1 60680590 3288110 complement(1303444..1304934) 1 NC_003228.3 C-terminal region similar to Agrobacterium tumefaciens shikimate 5-dehydrogenase AroE or ATU4295 or AGR_L_1139 SWALL:Q8U804 (EMBL:AE009357) (291 aa) fasta scores: E(): 1.6e-54, 56.07% id in 280 aa, and N-terminal region to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB or HtrP or B3041 or Z4399 or ECS3929 or SF3081 or S3286 SWALL:RIBB_ECOLI (SWALL:P24199) (217 aa) fasta scores: E(): 1.4e-46, 62.8% id in 207 aa; putative 3,4-dihydroxy-2-butanone 4-phosphate/shikimate 5-dehydrogenase fusion protein 1304934 3288110 BF9343_1005 Bacteroides fragilis NCTC 9343 putative 3,4-dihydroxy-2-butanone 4-phosphate/shikimate 5-dehydrogenase fusion protein YP_210734.1 1303444 R 272559 CDS YP_210735.1 60680591 3288964 1305157..1306023 1 NC_003228.3 Similar to Pseudomonas aeruginosa transcriptional regulator MtlR or pa2337 SWALL:Q9I1E1 (EMBL:AE004660) (301 aa) fasta scores: E(): 4e-20, 28.62% id in 283 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT3122 SWALL:AAO78228 (EMBL:AE016939) (289 aa) fasta scores: E(): 5e-24, 29.41% id in 272 aa, and to Pseudomonas fluorescens activator protein MtlR SWALL:O52770 (EMBL:AF047527) (301 aa) fasta scores: E(): 1.6e-18, 28.3% id in 272 aa; putative AraC-family transcriptional regulator 1306023 3288964 BF9343_1006 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_210735.1 1305157 D 272559 CDS YP_210736.1 60680592 3285933 1306201..1306365 1 NC_003228.3 no significant database matches; hypothetical protein 1306365 3285933 BF9343_1007 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210736.1 1306201 D 272559 CDS YP_210737.1 60680593 3289126 complement(1306384..1309242) 1 NC_003228.3 Similar to Vibrio vulnificus fog: wd40 repeat VV20373 SWALL:Q8D6Z7 (EMBL:AE016809) (944 aa) fasta scores: E(): 1.3e-12, 20.98% id in 710 aa; hypothetical protein 1309242 3289126 BF9343_1008 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210737.1 1306384 R 272559 CDS YP_210738.1 60680594 3288959 complement(1309301..1310200) 1 NC_003228.3 N-terminus is similar to C-terminus of Pseudomonas putida acetyltransferase, Gnat family PP2073 SWALL:AAN67687 (EMBL:AE016781) (171 aa) fasta scores: E(): 2.9e-20, 42.65% id in 143 aa, and N-terminus is similar to N-terminus of Pseudomonas putida acetyltransferase, Gnat family PP1192 SWALL:AAN66816 (EMBL:AE016778) (162 aa) fasta scores: E(): 1.8e-19, 41.66% id in 144 aa, and N-terminus is similar to N-terminus of Pseudomonas syringae acetyltransferase, Gnat family PSPTO4020 SWALL:AAO57477 (EMBL:AE016870) (146 aa) fasta scores: E(): 2.3e-17, 38.73% id in 142 aa; putative acetyltransferase 1310200 3288959 BF9343_1009 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_210738.1 1309301 R 272559 CDS YP_210739.1 60680595 3287137 complement(1310211..1311830) 1 NC_003228.3 Similar to Anabaena sp. ribosomal large chain pseudouridine synthase A ALL4080 SWALL:Q8YPW0 (EMBL:AP003595) (549 aa) fasta scores: E(): 9e-47, 34.69% id in 513 aa, and in its C-terminal region to Escherichia coli, and Shigella flexneri ribosomal large subunit pseudouridine synthase A RluA or B0058 or SF0053 or S0055 SWALL:RLUA_ECOLI (SWALL:P39219) (218 aa) fasta scores: E(): 1.2e-22, 42.38% id in 210 aa; putative ribosomal large subunit pseudouridine synthase 1311830 3287137 BF9343_1010 Bacteroides fragilis NCTC 9343 putative ribosomal large subunit pseudouridine synthase YP_210739.1 1310211 R 272559 CDS YP_210740.1 60680596 3289011 complement(1311846..1314878) 1 NC_003228.3 Similar to Salmonella typhimurium type III restriction-modification system StylTI enzyme Res or STM0358 SWALL:T3RE_SALTY (SWALL:P40815) (990 aa) fasta scores: E(): 1.6e-15, 25.72% id in 972 aa, and to Escherichia coli O6 hypothetical protein c5372 SWALL:Q8FAC2 (EMBL:AE016771) (1023 aa) fasta scores: E(): 8.3e-155, 46.33% id in 1036 aa, and to Pasteurella multocida hypothetical protein Pm0699 SWALL:Q9CMV5 (EMBL:AE006106) (1043 aa) fasta scores: E(): 1.1e-102, 42.03% id in 1054 aa; putative restriction enzyme of type III restriction-modification system 1314878 3289011 BF9343_1011 Bacteroides fragilis NCTC 9343 putative restriction enzyme of type III restriction-modification system YP_210740.1 1311846 R 272559 CDS YP_210741.1 60680597 3287130 complement(1314900..1316894) 1 NC_003228.3 Similar to Salmonella typhimurium type III restriction-modification system Stylti enzyme Mod or STM0357 SWALL:T3MO_SALTY (SWALL:P40814) (652 aa) fasta scores: E(): 2.6e-20, 30.31% id in 541 aa, and to Helicobacter pylori J99 type III DNA modification enzyme Mod_2 or jhp1411 SWALL:Q9ZJA2 (EMBL:AE001563) (641 aa) fasta scores: E(): 1.9e-54, 36.65% id in 603 aa, and to Pasteurella multocida hypothetical protein Pm0698 SWALL:Q9CMV6 (EMBL:AE006106) (636 aa) fasta scores: E(): 1.6e-53, 38.31% id in 676 aa; putative modification enzyme of type III restriction-modification system 1316894 3287130 BF9343_1012 Bacteroides fragilis NCTC 9343 putative modification enzyme of type III restriction-modification system YP_210741.1 1314900 R 272559 CDS YP_210742.1 60680598 3285845 1317351..1321217 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron alpha-xylosidase BT3169 SWALL:AAO78275 (EMBL:AE016939) (1294 aa) fasta scores: E(): 0, 74.92% id in 1284 aa, and to codon 1300 of Clostridium perfringens hypothetical protein CPE1046 SWALL:Q8XLJ5 (EMBL:AP003189) (1965 aa) fasta scores: E(): 5.6e-132, 44.29% id in 1271 aa, and to codon 1335 of Enterococcus faecalis glycosyl hydrolase, family 31/fibronectin type III domain protein ef1824 SWALL:AAO81591 (EMBL:AE016952) (1866 aa) fasta scores: E(): 8.4e-128, 45.58% id in 1281 aa; putative glycosyl hydrolase 1321217 3285845 BF9343_1013 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase YP_210742.1 1317351 D 272559 CDS YP_210743.1 60680599 3285844 complement(1321427..1322311) 1 NC_003228.3 Similar to Bacillus subtilis hypothetical oxidoreductase BacC SWALL:Q8KWT4 (EMBL:AF396778) (253 aa) fasta scores: E(): 5.4e-19, 31.74% id in 252 aa, and to Bacteroides thetaiotaomicron putative oxidoreductase BT1015 SWALL:Q8A902 (EMBL:AE016930) (295 aa) fasta scores: E(): 8.4e-86, 74.91% id in 295 aa, and to Geobacillus thermoleovorans short chain alcohol dehydrogenase Bt-adH SWALL:Q9LBG5 (EMBL:AB040809) (249 aa) fasta scores: E(): 2.9e-38, 50.2% id in 247 aa; putative dehydrogenase/oxidoreductase 1322311 3285844 BF9343_1014 Bacteroides fragilis NCTC 9343 putative dehydrogenase/oxidoreductase YP_210743.1 1321427 R 272559 CDS YP_210744.1 60680600 3285668 1322416..1322580 1 NC_003228.3 Similar to Leptospira interrogans hypothetical protein la0393 SWALL:Q8F904 (EMBL:AE011226) (61 aa) fasta scores: E(): 5.1, 40% id in 40 aa; hypothetical protein 1322580 3285668 BF9343_1015 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210744.1 1322416 D 272559 CDS YP_210745.1 60680601 3285525 complement(1322599..1322775) 1 NC_003228.3 no significant database matches; hypothetical protein 1322775 3285525 BF9343_1016 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210745.1 1322599 R 272559 CDS YP_210746.1 60680602 3287112 complement(1323128..1323304) 1 NC_003228.3 no significant database matches; hypothetical protein 1323304 3287112 BF9343_1017 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210746.1 1323128 R 272559 CDS YP_210747.1 60680603 3287036 1323557..1324951 1 NC_003228.3 Similar to Bifidobacterium longum hypothetical protein bl0253 SWALL:Q8G7L1 (EMBL:AE014643) (456 aa) fasta scores: E(): 4.3e-38, 41.34% id in 445 aa, and to Bifidobacterium longum hypothetical protein bl0619 SWALL:Q8G6M0 (EMBL:AE014683) (437 aa) fasta scores: E(): 2.5e-33, 35.47% id in 451 aa, and to Fusobacterium nucleatum ATPase FN1101 SWALL:Q8REJ9 (EMBL:AE010615) (470 aa) fasta scores: E(): 3.9e-27, 33.63% id in 443 aa; putative ATP/GTP-binding protein 1324951 3287036 BF9343_1018 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding protein YP_210747.1 1323557 D 272559 CDS YP_210748.1 60680604 3287035 1324963..1325589 1 NC_003228.3 no significant database matches; hypothetical protein 1325589 3287035 BF9343_1019 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210748.1 1324963 D 272559 CDS YP_210749.1 60680605 3287107 1325655..1327487 1 NC_003228.3 Similar to Campylobacter jejuni type I restriction-modification system RloF SWALL:Q8G8B7 (EMBL:AF542644) (554 aa) fasta scores: E(): 1.8e-16, 23.83% id in 579 aa, and to Campylobacter jejuni type I restriction-modification system RloF SWALL:Q8GN07 (EMBL:AF542651) (555 aa) fasta scores: E(): 4.9e-16, 26.7% id in 468 aa, and to Campylobacter jejuni type I restriction-modification system RloF SWALL:Q8RN41 (EMBL:AF486548) (555 aa) fasta scores: E(): 4.9e-16, 26.7% id in 468 aa; possible type I restriction-modification system protein 1327487 3287107 BF9343_1020 Bacteroides fragilis NCTC 9343 possible type I restriction-modification system protein YP_210749.1 1325655 D 272559 CDS YP_210750.1 60680606 3286873 1327737..1328012 1 NC_003228.3 no significant database matches; hypothetical protein 1328012 3286873 BF9343_1021 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210750.1 1327737 D 272559 CDS YP_210751.1 60680607 3289153 1328505..1329089 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4528 SWALL:AAO79633 (EMBL:AE016945) (194 aa) fasta scores: E(): 3.3e-72, 88.88% id in 189 aa, and to Rhizobium meliloti hypothetical protein rb0384 rb0384 or smb20398 SWALL:Q92WF5 (EMBL:AL603643) (164 aa) fasta scores: E(): 6.6e-12, 35.67% id in 171 aa, and to Methanococcus jannaschii hypothetical protein Mj1445 mj1445 SWALL:YE45_METJA (SWALL:Q58840) (176 aa) fasta scores: E(): 1.3e-11, 37.15% id in 183 aa; hypothetical protein 1329089 3289153 BF9343_1022 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210751.1 1328505 D 272559 CDS YP_210752.1 60680608 3286564 1329089..1329856 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4526 SWALL:AAO79631 (EMBL:AE016945) (255 aa) fasta scores: E(): 6.8e-85, 75.29% id in 251 aa, and to Microscilla sp. PRE1 ms153 SWALL:Q93P78 (EMBL:AF339846) (253 aa) fasta scores: E(): 6.9e-27, 33.98% id in 256 aa, and to Microscilla sp. PRE1 ms152 SWALL:Q93P79 (EMBL:AF339846) (260 aa) fasta scores: E(): 8e-26, 35.87% id in 262 aa; hypothetical protein 1329856 3286564 BF9343_1023 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210752.1 1329089 D 272559 CDS YP_210753.1 60680609 3287988 1329870..1331183 1 NC_003228.3 N-terminus is similar to C-terminus of Vibrio parahaemolyticus hypothetical protein vpa1429 SWALL:Q87G88 (EMBL:AP005088) (681 aa) fasta scores: E(): 5.7, 34.28% id in 70 aa; hypothetical protein 1331183 3287988 BF9343_1024 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210753.1 1329870 D 272559 CDS YP_210754.1 60680610 3286529 1331371..1331697 1 NC_003228.3 Similar, but truncated at the C-terminus, to Escherichia coli O6 hypothetical protein c5295 SWALL:Q8FAI3 (EMBL:AE016771) (163 aa) fasta scores: E(): 1.8e-10, 48.59% id in 107 aa; putative DNA-binding protein 1331697 3286529 BF9343_1025 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_210754.1 1331371 D 272559 CDS YP_210755.1 60680611 3286130 1331701..1332960 1 NC_003228.3 Similar to Arthrobacter nicotinovorans hypothetical protein SWALL:Q8GAL5 (EMBL:AJ507836) (458 aa) fasta scores: E(): 5.4e-27, 31.53% id in 390 aa, and to C-terminal 200 amino acids of Escherichia coli O6 hypothetical protein c5297 SWALL:Q8FAI1 (EMBL:AE016771) (203 aa) fasta scores: E(): 1.2e-23, 39.26% id in 191 aa, and to N-terminal 190 amino acids of Escherichia coli O6 hypothetical protein c5296 SWALL:Q8FAI2 (EMBL:AE016771) (195 aa) fasta scores: E(): 2.6e-16, 35.97% id in 189 aa, and to entire Pseudomonas syringae conserved domain protein PSPTO0522 SWALL:AAO54065 (EMBL:AE016857) (408 aa) fasta scores: E(): 2.2e-14, 29% id in 400 aa; hypothetical protein 1332960 3286130 BF9343_1026 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210755.1 1331701 D 272559 CDS YP_210756.1 60680612 3287108 1333290..1333511 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3153 SWALL:Q8A302 (EMBL:AE016939) (114 aa) fasta scores: E(): 6.2e-10, 48.33% id in 60 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4529 SWALL:Q89Z48 (EMBL:AE016945) (89 aa) fasta scores: E(): 8.3e-08, 50.84% id in 59 aa; putative DNA-binding protein 1333511 3287108 BF9343_1027 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_210756.1 1333290 D 272559 CDS YP_210757.1 60680613 3287607 1333514..1336186 1 NC_003228.3 Similar to Helicobacter pylori J99 type I restriction enzyme Hsdm_3 or jhp1423 SWALL:Q9ZJ91 (EMBL:AE001564) (815 aa) fasta scores: E(): 1.4e-78, 37.56% id in 905 aa, and to Helicobacter pylori type I restriction enzyme M protein hp1403 SWALL:O25953 (EMBL:AE000640) (817 aa) fasta scores: E(): 1.3e-75, 37.08% id in 906 aa, and to Methanosarcina mazei type I restriction-modification system specificity subunit Mm2294 SWALL:Q8PUN8 (EMBL:AE013471) (808 aa) fasta scores: E(): 1.2e-61, 41.34% id in 895 aa; putative modification protein of type I restriction-modification system 1336186 3287607 BF9343_1028 Bacteroides fragilis NCTC 9343 putative modification protein of type I restriction-modification system YP_210757.1 1333514 D 272559 CDS YP_210758.1 60680614 3289326 1336183..1337367 1 NC_003228.3 Similar to Methanosarcina mazei type I restriction-modification system specificity subunit MM2293 SWALL:Q8PUN9 (EMBL:AE013471) (406 aa) fasta scores: E(): 1.2e-21, 30.19% id in 414 aa, and to Lactococcus lactis HsdS subunit SWALL:O68173 (EMBL:AF013596) (395 aa) fasta scores: E(): 1.5e-16, 21.41% id in 397 aa, and to N-terminus of Escherichia coli HsdS protein SWALL:Q47280 (EMBL:X73984) (406 aa) fasta scores: E(): 5.1e-16, 37.01% id in 154 aa; putative modification protein of type I restriction-modification system 1337367 3289326 BF9343_1029 Bacteroides fragilis NCTC 9343 putative modification protein of type I restriction-modification system YP_210758.1 1336183 D 272559 CDS YP_210759.1 60680615 3287126 1337364..1340558 1 NC_003228.3 Similar to Methanosarcina mazei type I restriction-modification system restriction subunit MM2292 SWALL:Q8PUP0 (EMBL:AE013471) (1042 aa) fasta scores: E(): 4.4e-72, 42.64% id in 1020 aa, and to Helicobacter pylori J99 type I restriction enzyme HsdR_3 or jhp1424 SWALL:Q9ZJ90 (EMBL:AE001565) (991 aa) fasta scores: E(): 2.2e-64, 37.51% id in 1069 aa, and to Helicobacter pylori type I restriction enzyme R protein hp1402 SWALL:O25952 (EMBL:AE000640) (993 aa) fasta scores: E(): 1.1e-60, 37.08% id in 1049 aa, and to Klebsiella pneumoniae HsdR protein SWALL:Q48426 (EMBL:U33094) (1013 aa) fasta scores: E(): 1.3e-57, 41.47% id in 1056 aa; putative type I restriction enzyme 1340558 3287126 BF9343_1030 Bacteroides fragilis NCTC 9343 putative type I restriction enzyme YP_210759.1 1337364 D 272559 CDS YP_210760.1 60680616 3287601 1340558..1341268 1 NC_003228.3 Similar to Methanosarcina mazei zinc metalloprotease MM2291 SWALL:Q8PUP1 (EMBL:AE013471) (238 aa) fasta scores: E(): 6.1e-32, 39.28% id in 224 aa, and to Helicobacter pylori hypothetical protein Hp1401 SWALL:O25951 (EMBL:AE000640) (235 aa) fasta scores: E(): 9.5e-31, 38.22% id in 225 aa, and to Helicobacter pylori J99 putative jhp1425 SWALL:Q9ZJ89 (EMBL:AE001565) (235 aa) fasta scores: E(): 5.2e-30, 36.6% id in 224 aa; hypothetical protein 1341268 3287601 BF9343_1031 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210760.1 1340558 D 272559 CDS YP_210761.1 60680617 3286563 1341277..1342524 1 NC_003228.3 C-terminus is similar to C-terminus of Listeria innocua hypothetical protein Lin2940 SWALL:Q926V0 (EMBL:AL596174) blast scores: E(): 0.007, score: 44 26% id; hypothetical protein 1342524 3286563 BF9343_1032 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210761.1 1341277 D 272559 CDS YP_210762.1 60680618 3286862 1342848..1343057 1 NC_003228.3 no significant database matches; hypothetical protein 1343057 3286862 BF9343_1033 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210762.1 1342848 D 272559 CDS YP_210763.1 60680619 3287157 1343079..1343552 1 NC_003228.3 Similar to C-terminus of Vibrio parahaemolyticus hypothetical protein vp1826 SWALL:BAC60089 (EMBL:AP005079) (273 aa) fasta scores: E(): 1.7e-14, 36.18% id in 152 aa; Similar, but truncated at the N-terminus, to Vibrio parahaemolyticus hypothetical protein vp1826 SWALL:Q87NP2 (EMBL:AP005079) (273 aa) fasta scores: E(): 2e-14, 36.18% id in 152 aa, and to Escherichia coli, and Salmonella typhimurium endonuclease NuC SWALL:Q46707 (EMBL:U09868) (177 aa) fasta scores: E(): 1.4e-06, 31.45% id in 124 aa, and to Wigglesworthia glossinidia brevipalpis wg002 protein or wigbr3400 SWALL:Q8D2L4 (EMBL:AB063522) (183 aa) fasta scores: E(): 2.2e-06, 28.22% id in 163 aa; hypothetical protein 1343552 3287157 BF9343_1034 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210763.1 1343079 D 272559 CDS YP_210764.1 60680620 3288304 <1344828..1345154 1 NC_003228.3 no significant database matches; hypothetical protein 1345154 3288304 BF9343_1035 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210764.1 <1344828 D 272559 CDS YP_210765.1 60680621 3287477 1345330..1345599 1 NC_003228.3 no significant database matches; hypothetical protein 1345599 3287477 BF9343_1036 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210765.1 1345330 D 272559 CDS YP_210766.1 60680622 3288292 1345616..1346266 1 NC_003228.3 Similar to codons 165-380 of Bifidobacterium longum hypothetical protein possibly related to helicases bl0609 SWALL:Q8G6M9 (EMBL:AE014682) (549 aa) fasta scores: E(): 7.6e-13, 30% id in 210 aa, and to codons 160-211 of Deinococcus radiodurans ATP-dependent DNA helicase RecG-related protein dr2199 SWALL:Q9RSC6 (EMBL:AE002053) (596 aa) fasta scores: E(): 5.6e-12, 31.15% id in 199 aa; hypothetical protein 1346266 3288292 BF9343_1037 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210766.1 1345616 D 272559 CDS YP_210767.1 60680623 3288467 <1346267..1346434 1 NC_003228.3 no significant database matches; hypothetical protein 1346434 3288467 BF9343_1038 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210767.1 <1346267 D 272559 CDS YP_210768.1 60680624 3288874 1346438..1346587 1 NC_003228.3 no significant database matches; hypothetical protein 1346587 3288874 BF9343_1039 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210768.1 1346438 D 272559 CDS YP_210769.1 60680625 3288861 complement(1346747..1347469) 1 NC_003228.3 no significant database matches; hypothetical protein 1347469 3288861 BF9343_1040 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210769.1 1346747 R 272559 CDS YP_210770.1 60680626 3288080 complement(1347563..1347853) 1 NC_003228.3 no significant database matches; hypothetical protein 1347853 3288080 BF9343_1041 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210770.1 1347563 R 272559 CDS YP_210771.1 60680627 3288896 1347953..1348177 1 NC_003228.3 no significant database matches; hypothetical protein 1348177 3288896 BF9343_1042 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210771.1 1347953 D 272559 CDS YP_210772.1 60680628 3287915 1348602..1349960 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative ATPase BT2012 SWALL:AAO77119 (EMBL:AE016934) (429 aa) fasta scores: E(): 2.3e-32, 35.24% id in 437 aa, and to Fusobacterium nucleatum ATPase FN1101 SWALL:Q8REJ9 (EMBL:AE010615) (470 aa) fasta scores: E(): 3.5e-30, 32.43% id in 447 aa, and to Bacteroides thetaiotaomicron putative ATPase BT3083 SWALL:AAO78189 (EMBL:AE016938) (441 aa) fasta scores: E(): 3.5e-26, 31.75% id in 444 aa; putative ATP-binding protein 1349960 3287915 BF9343_1043 Bacteroides fragilis NCTC 9343 putative ATP-binding protein YP_210772.1 1348602 D 272559 CDS YP_210773.1 60680629 3287814 complement(1350231..1350425) 1 NC_003228.3 no significant database matches; hypothetical protein 1350425 3287814 BF9343_1044 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210773.1 1350231 R 272559 CDS YP_210774.1 60680630 3287600 complement(1350431..1350628) 1 NC_003228.3 no significant database matches; hypothetical protein 1350628 3287600 BF9343_1045 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210774.1 1350431 R 272559 CDS YP_210775.1 60680631 3288302 1350660..1351868 1 NC_003228.3 Similar to Campylobacter jejuni type I restriction-modification system RloA SWALL:Q8G8E7 (EMBL:AF542648) (429 aa) fasta scores: E(): 1.9e-11, 29.33% id in 433 aa, and to Fusobacterium nucleatum transporter FN1198 SWALL:Q8REB1 (EMBL:AE010625) (420 aa) fasta scores: E(): 1.1e-14, 27.37% id in 431 aa, and to Lactococcus lactis abortive phage resistance protein AbilI SWALL:O06042 (EMBL:U94520) (458 aa) fasta scores: E(): 1.3e-10, 26.3% id in 460 aa; putative ATP-binding protein 1351868 3288302 BF9343_1046 Bacteroides fragilis NCTC 9343 putative ATP-binding protein YP_210775.1 1350660 D 272559 CDS YP_210776.1 60680632 3288350 1351881..1352456 1 NC_003228.3 Similar to Corynebacterium efficiens hypothetical protein ce2899 SWALL:Q8FSZ3 (EMBL:AP005224) (205 aa) fasta scores: E(): 0.058, 23.35% id in 197 aa; hypothetical protein 1352456 3288350 BF9343_1047 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210776.1 1351881 D 272559 CDS YP_210777.1 60680633 3288218 1352577..1354652 1 NC_003228.3 Similar to Ralstonia oxalatica hypothetical protein SWALL:CAD61116 (EMBL:AJ536756) (712 aa) fasta scores: E(): 3.7e-119, 56.96% id in 704 aa, and to Staphylococcus aureus hypothetical protein Sav0414 SWALL:Q932H2 (EMBL:AP003359) (729 aa) fasta scores: E(): 2.4e-45, 38.04% id in 728 aa, and to Rhizobium loti hypothetical protein Mlr8165 SWALL:Q983V1 (EMBL:AP003013) (608 aa) fasta scores: E(): 2.6e-22, 27.23% id in 650 aa; conserved hypothetical protein with RecF/RecN/SMC N-terminal domain 1354652 3288218 BF9343_1048 Bacteroides fragilis NCTC 9343 conserved hypothetical protein with RecF/RecN/SMC N-terminal domain YP_210777.1 1352577 D 272559 CDS YP_210778.1 60680634 3288156 1354655..1356433 1 NC_003228.3 Similar to Staphylococcus aureus ATP-dependent DNA helicase PcrA SWALL:PCRA_STAAU (SWALL:Q53727) (675 aa) fasta scores: E(): 1.7e-17, 25.43% id in 629 aa, and to Ralstonia oxalatica hypothetical protein SWALL:CAD61115 (EMBL:AJ536756) (599 aa) fasta scores: E(): 7.9e-127, 54.13% id in 580 aa, and to Staphylococcus aureus hypothetical protein Sav0413 SWALL:Q932H3 (EMBL:AP003359) (597 aa) fasta scores: E(): 6.5e-61, 34.71% id in 605 aa; putative ATP-dependent DNA helicase 1356433 3288156 BF9343_1049 Bacteroides fragilis NCTC 9343 putative ATP-dependent DNA helicase YP_210778.1 1354655 D 272559 CDS YP_210779.1 60680635 3288929 1356614..1359898 1 NC_003228.3 no significant database matches; hypothetical protein 1359898 3288929 BF9343_1050 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210779.1 1356614 D 272559 CDS YP_210780.1 60680636 3285988 complement(1360764..1361024) 1 NC_003228.3 no significant database matches; hypothetical protein 1361024 3285988 BF9343_1052 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210780.1 1360764 R 272559 CDS YP_210781.1 60680637 3286370 1361437..1361568 1 NC_003228.3 no significant database matches; hypothetical protein 1361568 3286370 BF9343_1053 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210781.1 1361437 D 272559 CDS YP_210782.1 60680638 3288646 1361793..1362758 1 NC_003228.3 Similar to Yersinia enterocolitica hypothetical 43.2 kDa protein SWALL:Q9X9H2 (EMBL:AJ132945) (379 aa) fasta scores: E(): 7.9e-10, 28.96% id in 359 aa, and to Edwardsiella tarda hypothetical protein SWALL:Q8GF13 (EMBL:AY078507) (357 aa) fasta scores: E(): 4.7e-05, 25.5% id in 349 aa; putative beta-lactamase protein 1362758 3288646 BF9343_1054 Bacteroides fragilis NCTC 9343 putative beta-lactamase protein YP_210782.1 1361793 D 272559 CDS YP_210783.1 60680639 3286479 1362742..1367625 1 NC_003228.3 Codons 265-800 are similar to codons 180-730 of Anabaena sp. hypothetical protein ALL3465 SWALL:Q8YRI2 (EMBL:AP003593) (1119 aa) fasta scores: E(): 3.5e-08, 22.6% id in 575 aa, and codons 340-704 are similar to codons 180-540 of Anabaena sp. hypothetical protein Alr3789 SWALL:Q8YQN1 (EMBL:AP003594) (766 aa) fasta scores: E(): 6.4e-08, 22.34% id in 376 aa; putative ATP/GTP-binding protein 1367625 3286479 BF9343_1055 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding protein YP_210783.1 1362742 D 272559 CDS YP_210784.1 60680640 3285776 1367665..1368000 1 NC_003228.3 N-terminus is similar to N-terminus of Pseudomonas putida hypothetical protein PP1921 SWALL:AAN67538 (EMBL:AE016781) (387 aa) fasta scores: E(): 0.073, 35.78% id in 95 aa; hypothetical protein 1368000 3285776 BF9343_1056 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210784.1 1367665 D 272559 CDS YP_210785.1 60680641 3285524 1368084..1368317 1 NC_003228.3 no significant database matches; hypothetical protein 1368317 3285524 BF9343_1057 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210785.1 1368084 D 272559 CDS YP_210786.1 60680642 3286925 complement(1368660..1369427) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4526 SWALL:AAO79631 (EMBL:AE016945) (255 aa) fasta scores: E(): 2e-100, 90.58% id in 255 aa, and to Microscilla sp. PRE1 ms158, hypothetical protein SWALL:Q93P73 (EMBL:AF339846) (252 aa) fasta scores: E(): 2e-27, 35.51% id in 245 aa, and to Microscilla sp. PRE1 Ms153 SWALL:Q93P78 (EMBL:AF339846) (253 aa) fasta scores: E(): 1.2e-26, 32.03% id in 256 aa; hypothetical protein 1369427 3286925 BF9343_1058 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210786.1 1368660 R 272559 CDS YP_210787.1 60680643 3287006 complement(1369441..1369983) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4527 SWALL:AAO79632 (EMBL:AE016945) (180 aa) fasta scores: E(): 5.3e-48, 75.97% id in 179 aa; hypothetical protein 1369983 3287006 BF9343_1059 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210787.1 1369441 R 272559 CDS YP_210788.1 60680644 3286650 complement(1370000..1370581) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4528 SWALL:AAO79633 (EMBL:AE016945) (194 aa) fasta scores: E(): 1.3e-77, 94.27% id in 192 aa, and to Methanococcus jannaschii hypothetical protein Mj1445 mj1445 SWALL:YE45_METJA (SWALL:Q58840) (176 aa) fasta scores: E(): 1.6e-12, 36.21% id in 185 aa; hypothetical protein 1370581 3286650 BF9343_1060 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210788.1 1370000 R 272559 CDS YP_210789.1 60680645 3286726 1371025..1371294 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4529 SWALL:AAO79634 (EMBL:AE016945) (89 aa) fasta scores: E(): 4e-33, 93.25% id in 89 aa; putative DNA-binding protein 1371294 3286726 BF9343_1061 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_210789.1 1371025 D 272559 CDS YP_210790.1 60680646 3286688 1371299..1374571 1 NC_003228.3 Similar to Escherichia coli O6 hypothetical protein c5378 SWALL:Q8FAB6 (EMBL:AE016771) (1092 aa) fasta scores: E(): 1.4e-168, 53.7% id in 1106 aa, and to Pasteurella multocida hypothetical protein Pm0696 SWALL:Q9CMV8 (EMBL:AE006106) (1089 aa) fasta scores: E(): 6.4e-157, 50.58% id in 1107 aa; hypothetical protein 1374571 3286688 BF9343_1062 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210790.1 1371299 D 272559 CDS YP_210791.1 60680647 3286686 1374598..1375377 1 NC_003228.3 Similar to Staphylococcus epidermidis abortive phage resistance protein se0042 SWALL:Q8CQJ4 (EMBL:AE016744) (266 aa) fasta scores: E(): 2.4e-07, 27.55% id in 225 aa; hypothetical protein 1375377 3286686 BF9343_1063 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210791.1 1374598 D 272559 CDS YP_210792.1 60680648 3286181 1375388..1376071 1 NC_003228.3 Similar to Escherichia coli O6 hypothetical protein c5377 SWALL:Q8FAB7 (EMBL:AE016771) (233 aa) fasta scores: E(): 3.6e-15, 30.55% id in 216 aa; hypothetical protein 1376071 3286181 BF9343_1064 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210792.1 1375388 D 272559 CDS YP_210793.1 60680649 3286565 1376084..1377991 1 NC_003228.3 Similar to Moraxella catarrhalis type III restriction-modification system methyltransferase Mod SWALL:Q93LB8 (EMBL:AY049056) (636 aa) fasta scores: E(): 5.1e-87, 41.46% id in 615 aa, and to Salmonella typhimurium type III restriction-modification system Stylti enzyme Mod or STM0357 SWALL:T3MO_SALTY (SWALL:P40814) (652 aa) fasta scores: E(): 5.1e-49, 35.47% id in 513 aa, and to Salmonella typhi type III restriction-modification system Stylti enzyme Mod or STY0388 or t2507 SWALL:AAO70094 (EMBL:AL627266) (652 aa) fasta scores: E(): 1.2e-48, 35.28% id in 513 aa; putative modification enzyme of type III restriction-modification system 1377991 3286565 BF9343_1065 Bacteroides fragilis NCTC 9343 putative modification enzyme of type III restriction-modification system YP_210793.1 1376084 D 272559 CDS YP_210794.1 60680650 3287755 1378002..1379003 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3040 SWALL:Q8A3B4 (EMBL:AE016938) (338 aa) fasta scores: E(): 1.5e-72, 58.68% id in 334 aa, and to Neisseria meningitidis putative DNA-binding protein NMA1039 or NMB0830 SWALL:Q9JQY0 (EMBL:AL162754) (336 aa) fasta scores: E(): 2.7e-58, 51.34% id in 335 aa, and to Methanosarcina mazei hypothetical protein Mm2203 SWALL:Q8PUX5 (EMBL:AE013460) (344 aa) fasta scores: E(): 4.6e-51, 48.61% id in 325 aa; putative DNA-binding protein 1379003 3287755 BF9343_1066 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_210794.1 1378002 D 272559 CDS YP_210795.1 60680651 3287980 1378993..1382055 1 NC_003228.3 Similar to Salmonella typhimurium type III restriction-modification system Stylti enzyme Res or STM0358 SWALL:T3RE_SALTY (SWALL:P40815) (990 aa) fasta scores: E(): 7.4e-28, 26.13% id in 1014 aa, and to Fusobacterium nucleatum type III restriction-modification system restriction subunit FN0417 SWALL:Q8RG91 (EMBL:AE010553) (997 aa) fasta scores: E(): 3.3e-67, 37.4% id in 1040 aa, and to Chlorobium tepidum type III restriction system endonuclease Res or CT0911 SWALL:Q8KDY3 (EMBL:AE012856) (991 aa) fasta scores: E(): 1.2e-65, 38.93% id in 1035 aa; putative restriction enzyme of type III restriction-modification system 1382055 3287980 BF9343_1067 Bacteroides fragilis NCTC 9343 putative restriction enzyme of type III restriction-modification system YP_210795.1 1378993 D 272559 CDS YP_210796.1 60680652 3287716 1382089..1385250 1 NC_003228.3 no significant database matches; putative ATP/GTP-binding protein 1385250 3287716 BF9343_1068 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding protein YP_210796.1 1382089 D 272559 CDS YP_210797.1 60680653 3287926 1385269..1387980 1 NC_003228.3 Similar to Fusobacterium nucleatum DNA helicase FN1445 SWALL:Q8RDR3 (EMBL:AE010649) (849 aa) fasta scores: E(): 1.2e-113, 43.3% id in 836 aa, and to Pseudomonas syringae conserved hypothetical protein PSPTO1455 SWALL:AAO54976 (EMBL:AE016861) (758 aa) fasta scores: E(): 7.2e-52, 37.38% id in 749 aa, and to Escherichia coli O157:H7 hypothetical protein z1202 or Z1642 or ECS1384 SWALL:Q8X9M6 (EMBL:AE005312) (711 aa) fasta scores: E(): 7.9e-51, 35.41% id in 720 aa; putative ATP/GTP-binding protein 1387980 3287926 BF9343_1069 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding protein YP_210797.1 1385269 D 272559 CDS YP_210798.1 60680654 3287629 1387992..1388648 1 NC_003228.3 no significant database matches; hypothetical protein 1388648 3287629 BF9343_1070 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210798.1 1387992 D 272559 CDS YP_210799.1 60680655 3287313 1388656..1389687 1 NC_003228.3 Similar to Methanosarcina mazei hypothetical protein MM2203 SWALL:Q8PUX5 (EMBL:AE013460) (344 aa) fasta scores: E(): 7.1e-66, 52.41% id in 332 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4539 SWALL:AAO79644 (EMBL:AE016945) (462 aa) fasta scores: E(): 6.6e-61, 48.1% id in 343 aa, and to Bacteriophage WO Gp8 protein SWALL:Q9JMN3 (EMBL:AB036666) (339 aa) fasta scores: E(): 1.9e-58, 49.53% id in 321 aa; hypothetical protein 1389687 3287313 BF9343_1071 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210799.1 1388656 D 272559 CDS YP_210800.1 60680656 3287632 complement(1389762..1390289) 1 NC_003228.3 no significant database matches; putative transmembrane protein 1390289 3287632 BF9343_1072 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210800.1 1389762 R 272559 CDS YP_210801.1 60680657 3288019 complement(1390294..1391505) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with relaxase/mobilization nuclease domain BT2995 SWALL:AAO78101 (EMBL:AE016938) (403 aa) fasta scores: E(): 1.6e-45, 34.14% id in 410 aa, and to previously sequenced Bacteroides fragilis mobilization protein MbpB SWALL:Q45123 (EMBL:U25716) (264 aa) fasta scores: E(): 1.8e-07, 27.85% id in 280 aa; hypothetical protein 1391505 3288019 BF9343_1073 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210801.1 1390294 R 272559 CDS YP_210802.1 60680658 3287623 complement(1391502..1391921) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2994 SWALL:AAO78100 (EMBL:AE016938) (135 aa) fasta scores: E(): 1.2e-06, 32.99% id in 97 aa, and to previously sequenced Bacteroides fragilis mobilization protein MbpA SWALL:Q45122 (EMBL:U25716) (99 aa) fasta scores: E(): 0.19, 25.26% id in 95 aa; hypothetical protein 1391921 3287623 BF9343_1074 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210802.1 1391502 R 272559 CDS YP_210803.1 60680659 3288511 complement(1392236..1393306) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical 41.4 kDa protein SWALL:Q9KHQ3 (EMBL:AF251288) (359 aa) fasta scores: E(): 2.8e-72, 56.86% id in 357 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4546 SWALL:AAO79651 (EMBL:AE016945) (357 aa) fasta scores: E(): 2e-68, 53.65% id in 356 aa, and to previously sequenced Bacteroides fragilis hypothetical 40.8 kDa protein SWALL:Q8RM67 (EMBL:AY053505) (357 aa) fasta scores: E(): 4.1e-63, 49.01% id in 355 aa; hypothetical protein 1393306 3288511 BF9343_1075 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210803.1 1392236 R 272559 CDS YP_210804.1 60680660 3287355 complement(1393309..1393683) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis excisionase Xis SWALL:Q9XBH1 (EMBL:U75371) (124 aa) fasta scores: E(): 6.2e-23, 54.03% id in 124 aa, and to Bacteroides thetaiotaomicron excisionase BT4547 SWALL:AAO79652 (EMBL:AE016945) (124 aa) fasta scores: E(): 7e-36, 73.38% id in 124 aa, and to Bacteroides thetaiotaomicron excisionase BT0231 SWALL:AAO75338 (EMBL:AE016926) (123 aa) fasta scores: E(): 2e-21, 49.19% id in 124 aa; putative excisionase 1393683 xis 3287355 xis Bacteroides fragilis NCTC 9343 putative excisionase YP_210804.1 1393309 R 272559 CDS YP_210805.1 60680661 3287610 complement(1393784..1394638) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4548 SWALL:AAO79653 (EMBL:AE016945) (250 aa) fasta scores: E(): 1.5e-26, 55.21% id in 163 aa; putative transmembrane protein 1394638 3287610 BF9343_1077 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210805.1 1393784 R 272559 CDS YP_210806.1 60680662 3289186 complement(1394799..1395914) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis Integrase Int SWALL:O05723 (EMBL:U75371) (372 aa) fasta scores: E(): 2.6e-67, 48.53% id in 375 aa, and to Bacteroides thetaiotaomicron integrase BT4549 SWALL:AAO79654 (EMBL:AE016945) (372 aa) fasta scores: E(): 5.4e-126, 82.79% id in 372 aa, and to Bacteroides thetaiotaomicron integrase BT0233 SWALL:AAO75340 (EMBL:AE016926) (373 aa) fasta scores: E(): 1.1e-79, 55.4% id in 370 aa; putative bacteriophage integrase 1395914 int 3289186 int Bacteroides fragilis NCTC 9343 putative bacteriophage integrase YP_210806.1 1394799 R 272559 CDS YP_210807.1 60680663 3288166 complement(1396032..1396910) 1 NC_003228.3 Similar to Bacteroides fragilis transposase TnpA SWALL:O05722 (EMBL:U75371) (311 aa) fasta scores: E(): 3.3e-16, 36.3% id in 314 aa, and to Bacteroides thetaiotaomicron putative transposase BT4550 SWALL:Q89Z27 (EMBL:AE016945) (486 aa) fasta scores: E(): 1.3e-19, 32.64% id in 291 aa, and to Bacteroides thetaiotaomicron putative transposase BT0234 SWALL:Q8AB76 (EMBL:AE016926) (316 aa) fasta scores: E(): 8.5e-18, 35.44% id in 316 aa; putative transposase 1396910 3288166 BF9343_1079 Bacteroides fragilis NCTC 9343 putative transposase YP_210807.1 1396032 R 272559 CDS YP_210808.1 60680664 3288059 complement(1397172..1398569) 1 NC_003228.3 Similar to Bacillus subtilis probable tRNA modification GTPase TrmE or ThdF or BSU41020 SWALL:TRME_BACSU (SWALL:P25811) (459 aa) fasta scores: E(): 2e-49, 36.38% id in 470 aa, and to Bacteroides thetaiotaomicron tRNA modification GTPase TrmE or BT4551 SWALL:AAO79656 (EMBL:AE016945) (465 aa) fasta scores: E(): 2.3e-140, 86.88% id in 465 aa, and to Chlorobium tepidum tRNA modification GTPase TrmE or ThdF or CT2084 SWALL:TRME_CHLTE (SWALL:Q8KAS1) (473 aa) fasta scores: E(): 7.4e-54, 40% id in 465 aa; putative tRNA modification GTPase 1398569 3288059 BF9343_1080 Bacteroides fragilis NCTC 9343 putative tRNA modification GTPase YP_210808.1 1397172 R 272559 CDS YP_210809.1 60680665 3288167 1398685..1400598 1 NC_003228.3 Similar, but slightly truncated at the C-terminus, to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or B3210 or SF3250 or s3468 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 2.2e-31, 26.27% id in 609 aa, and to entire Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT4552 SWALL:AAO79657 (EMBL:AE016945) (635 aa) fasta scores: E(): 1.1e-177, 73.56% id in 628 aa, and C-terminus is similar to C-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1447 SWALL:AAO76554 (EMBL:AE016931) (785 aa) fasta scores: E(): 1.7e-62, 38.43% id in 523 aa; putative two-component system sensor histidine kinase/response regulator fusion protein 1400598 3288167 BF9343_1081 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase/response regulator fusion protein YP_210809.1 1398685 D 272559 CDS YP_210810.1 60680666 3288168 1400685..1401335 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4553 SWALL:AAO79658 (EMBL:AE016945) (219 aa) fasta scores: E(): 1.7e-72, 88.88% id in 216 aa, and to Pseudomonas aeruginosa hypothetical protein PA0741 SWALL:Q9I5I8 (EMBL:AE004509) (213 aa) fasta scores: E(): 6.2e-34, 50% id in 214 aa, and to Vibrio cholerae hypothetical protein VCA1054 SWALL:Q9KKP8 (EMBL:AE004431) (212 aa) fasta scores: E(): 8.2e-23, 39.35% id in 216 aa; hypothetical protein 1401335 3288168 BF9343_1082 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210810.1 1400685 D 272559 CDS YP_210811.1 60680667 3285193 complement(1401319..1401846) 1 NC_003228.3 Similar to Clostridium acetobutylicum DNA polymerase III epsilon subunit CAC0738 SWALL:Q97L28 (EMBL:AE007589) (306 aa) fasta scores: E(): 9.4e-17, 32.54% id in 169 aa, and to Clostridium perfringens probable DNA polymerase III epsilon chain CPE1401 SWALL:Q8XKJ3 (EMBL:AP003190) (302 aa) fasta scores: E(): 3.6e-16, 37.19% id in 164 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1057 SWALL:Q8CUQ0 (EMBL:AP004596) (195 aa) fasta scores: E(): 7.3e-16, 36.04% id in 172 aa; putative exonuclease 1401846 3285193 BF9343_1083 Bacteroides fragilis NCTC 9343 putative exonuclease YP_210811.1 1401319 R 272559 CDS YP_210812.1 60680668 3288942 complement(1401846..1402724) 1 NC_003228.3 Limited similarity to Streptococcus thermophilus purine nucleoside phosphorylase protein deoD SWALL:Q8VM11 (EMBL:AJ289861) (236 aa) fasta scores: E(): 0.00011, 26.88% id in 279 aa, and to Bacteroides thetaiotaomicron purine nucleoside phosphorylase II BT4554 SWALL:Q89Z23 (EMBL:AE016945) (292 aa) fasta scores: E(): 3.4e-113, 94.52% id in 292 aa, and to Halobacterium sp. uridine phosphorylase UDP1 or vng1850G SWALL:Q9HP14 (EMBL:AE005085) (258 aa) fasta scores: E(): 2.2e-06, 28.96% id in 252 aa; putative purine nucleoside phosphorylase/uridine phosphorylase family protein 1402724 3288942 BF9343_1084 Bacteroides fragilis NCTC 9343 putative purine nucleoside phosphorylase/uridine phosphorylase family protein YP_210812.1 1401846 R 272559 CDS YP_210813.1 60680669 3286277 complement(1402851..1403852) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4555 SWALL:AAO79660 (EMBL:AE016945) (333 aa) fasta scores: E(): 7.8e-100, 93.29% id in 328 aa, and to Bacillus subtilis hypothetical protein YqfA or BSU25380 SWALL:YQFA_BACSU (SWALL:P54466) (331 aa) fasta scores: E(): 1.9e-67, 66.87% id in 320 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1959 SWALL:Q8EPX2 (EMBL:AP004599) (330 aa) fasta scores: E(): 7.7e-66, 64.87% id in 316 aa; hypothetical protein 1403852 3286277 BF9343_1085 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210813.1 1402851 R 272559 CDS YP_210814.1 60680670 3288904 complement(1403878..1404348) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4556 SWALL:AAO79661 (EMBL:AE016945) (156 aa) fasta scores: E(): 2.3e-42, 80% id in 155 aa; putative transmembrane protein 1404348 3288904 BF9343_1086 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210814.1 1403878 R 272559 CDS YP_210815.1 60680671 3287835 complement(1404355..1405782) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4557 SWALL:AAO79662 (EMBL:AE016945) (475 aa) fasta scores: E(): 2.2e-133, 71% id in 476 aa; hypothetical protein 1405782 3287835 BF9343_1087 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210815.1 1404355 R 272559 CDS YP_210816.1 60680672 3288928 1405923..1406672 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4558 SWALL:AAO79663 (EMBL:AE016945) (248 aa) fasta scores: E(): 9.1e-87, 85.88% id in 248 aa, and to Clostridium perfringens hypothetical protein CPE0990 SWALL:Q8XLQ1 (EMBL:AP003188) (244 aa) fasta scores: E(): 1e-25, 36.43% id in 247 aa, and to Clostridium tetani ATPase of the PP-loop superfamily CTC00320 SWALL:AAO34961 (EMBL:AE015937) (236 aa) fasta scores: E(): 1.7e-24, 34.18% id in 234 aa; hypothetical protein 1406672 3288928 BF9343_1088 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210816.1 1405923 D 272559 CDS YP_210817.1 60680673 3285181 1406686..1407054 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4559 SWALL:AAO79664 (EMBL:AE016945) (123 aa) fasta scores: E(): 6.1e-39, 76.42% id in 123 aa, and to Leptospira interrogans conserved hypothetical protein LA1560 SWALL:Q8F5V6 (EMBL:AE011334) (102 aa) fasta scores: E(): 3.3e-15, 47.11% id in 104 aa; hypothetical protein 1407054 3285181 BF9343_1089 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210817.1 1406686 D 272559 CDS YP_210818.1 60680674 3289085 complement(1407390..1408430) 1 NC_003228.3 Similar to Salmonella typhimurium thiamine biosynthesis lipoprotein ApbE precursor or STM2266 SWALL:APBE_SALTY (SWALL:P41780) (350 aa) fasta scores: E(): 1.1e-26, 31.57% id in 304 aa, and to Bacteroides thetaiotaomicron thiamine biosynthesis lipoprotein ApbE precursor BT4560 SWALL:AAO79665 (EMBL:AE016945) (338 aa) fasta scores: E(): 3.7e-98, 76.27% id in 333 aa, and to Vibrio cholerae thiamin biosynthesis lipoprotein ApbE vc2289 SWALL:Q9KPS3 (EMBL:AE004300) (367 aa) fasta scores: E(): 2.8e-31, 36.67% id in 349 aa. Putative alternative start site at codon 9; putative thiamine biosynthesis lipoprotein 1408430 apbE 3289085 apbE Bacteroides fragilis NCTC 9343 putative thiamine biosynthesis lipoprotein YP_210818.1 1407390 R 272559 CDS YP_210819.1 60680675 3287603 complement(1408478..1409062) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative integral membrane protein BT4561 SWALL:AAO79666 (EMBL:AE016945) (193 aa) fasta scores: E(): 2.8e-60, 79.16% id in 192 aa, and to Campylobacter jejuni putative integral membrane protein cj0167C SWALL:Q9PIW1 (EMBL:AL139074) (187 aa) fasta scores: E(): 7.8e-29, 45.16% id in 186 aa, and to Methanosarcina acetivorans hypothetical protein Ma3749 ma3749 SWALL:Q8TJN1 (EMBL:AE011086) (186 aa) fasta scores: E(): 3e-27, 47.15% id in 193 aa; putative transmembrane protein 1409062 3287603 BF9343_1091 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210819.1 1408478 R 272559 CDS YP_210820.1 60680676 3288555 complement(1409067..1409639) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4562 SWALL:Q89Z15 (EMBL:AE016945) (188 aa) fasta scores: E(): 5.4e-49, 63.29% id in 188 aa; hypothetical protein 1409639 3288555 BF9343_1092 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210820.1 1409067 R 272559 CDS YP_210821.1 60680677 3287451 complement(1409776..1410303) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4563 SWALL:AAO79668 (EMBL:AE016945) (183 aa) fasta scores: E(): 5.3e-30, 53.33% id in 180 aa; hypothetical protein 1410303 3287451 BF9343_1093 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210821.1 1409776 R 272559 CDS YP_210822.1 60680678 3288906 complement(1410328..1411281) 1 NC_003228.3 Similar to Shigella flexneri type IV O antigen modification component GtrB-IV SWALL:Q93TY8 (EMBL:AF288197) (304 aa) fasta scores: E(): 6.2e-17, 30.74% id in 309 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT4564 SWALL:AAO79669 (EMBL:AE016945) (316 aa) fasta scores: E(): 7.6e-110, 89.27% id in 317 aa, and to Chlorobium tepidum glycosyl transferase CT0317 SWALL:Q8KFK9 (EMBL:AE012810) (328 aa) fasta scores: E(): 2.1e-43, 47.05% id in 323 aa; putative transmembrane glycosyltransferase 1411281 3288906 BF9343_1094 Bacteroides fragilis NCTC 9343 putative transmembrane glycosyltransferase YP_210822.1 1410328 R 272559 CDS YP_210823.1 60680679 3285463 complement(1411308..1411820) 1 NC_003228.3 From codon 50 similar to Bacteroides thetaiotaomicron hypothetical protein BT4565 SWALL:Q89Z12 (EMBL:AE016945) (124 aa) fasta scores: E(): 1.1e-21, 55.93% id in 118 aa; putative transmembrane protein 1411820 3285463 BF9343_1095 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210823.1 1411308 R 272559 CDS YP_210824.1 60680680 3285115 complement(1412411..1413700) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis enolase Eno or HupA SWALL:Q8KNX9 (EMBL:AJ495857) (429 aa) fasta scores: E(): 1.1e-158, 100% id in 429 aa, and similar to Bacteroides thetaiotaomicron enolase BT4572 SWALL:AAO79677 (EMBL:AE016945) (426 aa) fasta scores: E(): 1.9e-148, 93.88% id in 425 aa, and to Streptococcus sobrinus enolase Eno1 SWALL:CAD60544 (EMBL:AJ536594) (433 aa) fasta scores: E(): 4.6e-115, 73.5% id in 419 aa; putative heme-binding enolase 1413700 eno 3285115 eno Bacteroides fragilis NCTC 9343 putative heme-binding enolase YP_210824.1 1412411 R 272559 CDS YP_210825.1 60680681 3285538 complement(1413848..1414513) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4573 SWALL:AAO79678 (EMBL:AE016945) (220 aa) fasta scores: E(): 2.9e-52, 60.09% id in 213 aa, and to Clostridium perfringens hypothetical protein CPE0960 SWALL:Q8XLT1 (EMBL:AP003188) (213 aa) fasta scores: E(): 6.2e-23, 34.03% id in 191 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, YisX B.subtilis ortholog CAC1657 SWALL:Q97II4 (EMBL:AE007675) (216 aa) fasta scores: E(): 1e-21, 34.74% id in 213 aa; hypothetical protein 1414513 3285538 BF9343_1097 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210825.1 1413848 R 272559 CDS YP_210826.1 60680682 3287275 complement(1414528..1414911) 1 NC_003228.3 Similar to Escherichia coli chromosome condensation and camphor resistance protein CrcB or B0624 SWALL:CRCB_ECOLI (SWALL:P37002) (127 aa) fasta scores: E(): 7.7e-11, 38.65% id in 119 aa, and to Agrobacterium tumefaciens protein CrcB homolog or atu1470 or agr_c_2712 SWALL:CRCB_AGRT5 (SWALL:Q8UFC8) (125 aa) fasta scores: E(): 1.2e-15, 43.3% id in 127 aa, and to Bacteroides thetaiotaomicron protein homolog CrcB or BT4574 SWALL:AAO79679 (EMBL:AE016945) (124 aa) fasta scores: E(): 1.7e-14, 42.06% id in 126 aa; putative transmembrane camphor resistance and chromosome condensation CrcB homologue 1414911 crcB 3287275 crcB Bacteroides fragilis NCTC 9343 putative transmembrane camphor resistance and chromosome condensation CrcB homologue YP_210826.1 1414528 R 272559 CDS YP_210827.1 60680683 3287283 1415054..1417225 1 NC_003228.3 Similar to Bacteroides forsythus SusB SWALL:AAO33827 (EMBL:AY184489) (708 aa) fasta scores: E(): 1.5e-217, 73.69% id in 707 aa, and to Bacteroides thetaiotaomicron alpha-glucosidase BT4581 SWALL:AAO79686 (EMBL:AE016945) (719 aa) fasta scores: E(): 0, 84.7% id in 719 aa, and to Bacteroides thetaiotaomicron alpha-glucosidase SusB or BT3703 SWALL:AAO78808 (EMBL:U66897) (738 aa) fasta scores: E(): 1.7e-213, 71.44% id in 739 aa; putative alpha-glucosidase 1417225 susB 3287283 susB Bacteroides fragilis NCTC 9343 putative alpha-glucosidase YP_210827.1 1415054 D 272559 CDS YP_210828.1 60680684 3288910 complement(1417637..1417996) 1 NC_003228.3 no significant database matches; putative DNA-binding protein 1417996 3288910 BF9343_1100 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_210828.1 1417637 R 272559 CDS YP_210829.1 60680685 3287819 1418224..1419837 1 NC_003228.3 Similar to Plasmodium vivax merozoite surface protein 3 alpha SWALL:Q86RM6 (EMBL:AF491957) (856 aa) fasta scores: E(): 4.1e-05, 23.11% id in 545 aa; hypothetical protein 1419837 3287819 BF9343_1101 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210829.1 1418224 D 272559 CDS YP_210830.1 60680686 3287944 1419884..1420657 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT1926 SWALL:AAO77033 (EMBL:AE016934) (288 aa) fasta scores: E(): 0.00011, 22.81% id in 298 aa; hypothetical protein 1420657 3287944 BF9343_1102 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210830.1 1419884 D 272559 CDS YP_210831.1 60680687 3289154 complement(1420768..1421193) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 heat shock protein 15 HslR or B3400 or C4171 or Z4754 or ECS4242 SWALL:HSLR_ECOLI (SWALL:P45802) (133 aa) fasta scores: E(): 9.7e-05, 25% id in 120 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4587 SWALL:AAO79692 (EMBL:AE016945) (140 aa) fasta scores: E(): 4.1e-46, 89.2% id in 139 aa, and to Corynebacterium glutamicum ribosome-associated heat shock protein implicated in the recycling of the 50S subunit CGL2123 SWALL:Q8NNR4 (EMBL:AP005280) (126 aa) fasta scores: E(): 9.5e-13, 40.98% id in 122 aa; putative ribosome-associated heat shock protein 1421193 hslR 3289154 hslR Bacteroides fragilis NCTC 9343 putative ribosome-associated heat shock protein YP_210831.1 1420768 R 272559 CDS YP_210832.1 60680688 3289292 complement(1421220..1421783) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 peptidyl-tRNA hydrolase Pth or B1204 or C1662 or Z1975 or ECS1709 SWALL:PTH_ECOLI (SWALL:P23932) (194 aa) fasta scores: E(): 2.2e-16, 37.63% id in 186 aa, and to Bacteroides thetaiotaomicron peptidyl-tRNA hydrolase BT4588 SWALL:Q89YZ2 (EMBL:AE016945) (189 aa) fasta scores: E(): 8.3e-67, 88.83% id in 188 aa, and to Thermoanaerobacter tengcongensis peptidyl-tRNA hydrolase Pth or TTE2567 SWALL:PTH_THETN (SWALL:Q8R757) (185 aa) fasta scores: E(): 1e-25, 43.85% id in 187 aa; putative peptidyl-tRNA hydrolase 1421783 pth 3289292 pth Bacteroides fragilis NCTC 9343 putative peptidyl-tRNA hydrolase YP_210832.1 1421220 R 272559 CDS YP_210833.1 60680689 3287208 complement(1421890..1422480) 1 NC_003228.3 Similar to Bacillus subtilis general stress protein Ctc or BSU00520 SWALL:CTC_BACSU (SWALL:P14194) (203 aa) fasta scores: E(): 4.7e-10, 30.6% id in 183 aa, and to Bacteroides thetaiotaomicron putative 50S ribosomal protein L25 BT4589 SWALL:AAO79694 (EMBL:AE016945) (196 aa) fasta scores: E(): 1.3e-65, 93.87% id in 196 aa, and to Chlorobium tepidum general stress protein Ctc or CT1362 SWALL:Q8KCQ1 (EMBL:AE012895) (199 aa) fasta scores: E(): 1e-14, 36.45% id in 192 aa; putative ribosomal L25p family stress protein 1422480 3287208 BF9343_1105 Bacteroides fragilis NCTC 9343 putative ribosomal L25p family stress protein YP_210833.1 1421890 R 272559 CDS YP_210834.1 60680690 3287492 complement(1422625..1423011) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4590 SWALL:Q89YZ0 (EMBL:AE016945) (134 aa) fasta scores: E(): 2.8e-29, 73.13% id in 134 aa; hypothetical protein 1423011 3287492 BF9343_1106 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210834.1 1422625 R 272559 CDS YP_210835.1 60680691 3287826 1423222..1424106 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative nitrogen utilization substance protein BT4591 SWALL:Q89YY9 (EMBL:AE016945) (260 aa) fasta scores: E(): 5.1e-90, 91.53% id in 260 aa, and to Porphyromonas gingivalis W83 NusB family protein PG0807 SWALL:AAQ65967 (EMBL:AE017174) (364 aa) fasta scores: E(): 3.4e-22, 36.33% id in 333 aa, and to Chlorobium tepidum N utilization substance protein B homolog NusB or CT1709 SWALL:NUSB_CHLTE (SWALL:Q8KBS4) (164 aa) fasta scores: E(): 1.9e-10, 36.29% id in 135 aa. Possible alternative start site.; putative N utilization substance protein 1424106 3287826 BF9343_1107 Bacteroides fragilis NCTC 9343 putative N utilization substance protein YP_210835.1 1423222 D 272559 CDS YP_210836.1 60680692 3288307 1424153..1424479 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with conserved domain BT4592 SWALL:AAO79697 (EMBL:AE016945) (105 aa) fasta scores: E(): 4.7e-34, 90.47% id in 105 aa, and to Pseudomonas syringae preprotein translocase, YajC subunit or PSPTO1414 SWALL:AAO54935 (EMBL:AE016860) (111 aa) fasta scores: E(): 1.7e-11, 45.45% id in 88 aa, and to Pseudomonas putida preprotein translocase, YajC subunit or PP0834 SWALL:AAN66459 (EMBL:AE016777) (111 aa) fasta scores: E(): 5.2e-11, 44.31% id in 88 aa; conserved hypothetical protein with preprotein translocase motif 1424479 3288307 BF9343_1108 Bacteroides fragilis NCTC 9343 conserved hypothetical protein with preprotein translocase motif YP_210836.1 1424153 D 272559 CDS YP_210837.1 60680693 3288352 1424503..1425516 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4593 SWALL:AAO79698 (EMBL:AE016945) (337 aa) fasta scores: E(): 8.2e-99, 77.08% id in 336 aa; hypothetical protein 1425516 3288352 BF9343_1109 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210837.1 1424503 D 272559 CDS YP_210838.1 60680694 3288060 1425506..1426123 1 NC_003228.3 Similar to Pseudomonas putida dephospho-CoA kinase CoAE SWALL:COAE_PSEPG (SWALL:O69082) (207 aa) fasta scores: E(): 2.9e-10, 27.74% id in 191 aa, and to Bacteroides thetaiotaomicron putative dephospho-CoA kinase BT4594 SWALL:AAO79699 (EMBL:AE016945) (204 aa) fasta scores: E(): 1.5e-48, 64.03% id in 203 aa, and to Thermoanaerobacter tengcongensis dephospho-CoA kinase CoAE or TTE0875 SWALL:COAE_THETN (SWALL:Q8RBE5) (201 aa) fasta scores: E(): 9.3e-16, 30.57% id in 193 aa; putative dephospho-CoA kinase 1426123 3288060 BF9343_1110 Bacteroides fragilis NCTC 9343 putative dephospho-CoA kinase YP_210838.1 1425506 D 272559 CDS YP_210839.1 60680695 3288295 1426141..1426557 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4595 SWALL:AAO79700 (EMBL:AE016945) (144 aa) fasta scores: E(): 3.4e-35, 78.98% id in 138 aa; hypothetical protein 1426557 3288295 BF9343_1111 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210839.1 1426141 D 272559 CDS YP_210840.1 60680696 3285900 1427044..1427283 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4596 SWALL:AAO79701 (EMBL:AE016945) (82 aa) fasta scores: E(): 1.4e-05, 42.5% id in 80 aa; hypothetical protein 1427283 3285900 BF9343_1112 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210840.1 1427044 D 272559 CDS YP_210841.1 60680697 3289280 complement(1427359..1429947) 1 NC_003228.3 Similar to Synechococcus sp. heat shock ClpB protein SWALL:CLPB_SYNP7 (SWALL:P53533) (883 aa) fasta scores: E(): 6.3e-144, 54.86% id in 873 aa, and to Bacteroides thetaiotaomicron endopeptidase Clp ATP-binding chain B BT4597 SWALL:AAO79702 (EMBL:AE016945) (862 aa) fasta scores: E(): 0, 93.85% id in 862 aa, and to Synechococcus elongatus ClpB protein TLR1389 SWALL:Q8DJ40 (EMBL:AP005373) (871 aa) fasta scores: E(): 2.2e-148, 56.69% id in 866 aa; putative heat shock ClpB protein 1429947 clpB 3289280 clpB Bacteroides fragilis NCTC 9343 putative heat shock ClpB protein YP_210841.1 1427359 R 272559 CDS YP_210842.1 60680698 3287168 1430170..1430751 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4598 SWALL:AAO79703 (EMBL:AE016945) (194 aa) fasta scores: E(): 2.3e-46, 66.66% id in 195 aa; hypothetical protein 1430751 3287168 BF9343_1114 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210842.1 1430170 D 272559 CDS YP_210843.1 60680699 3285913 1430776..1431672 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator YeiE or B2157 or C2692 or Z3414 or ECS3049 SWALL:YEIE_ECOLI (SWALL:P32484) (293 aa) fasta scores: E(): 1.4e-21, 32.86% id in 286 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT4599 SWALL:AAO79704 (EMBL:AE016945) (298 aa) fasta scores: E(): 1e-92, 82.55% id in 298 aa, and to Thermoanaerobacter tengcongensis transcriptional regulator LysR2 or TTE0987 SWALL:Q8RB37 (EMBL:AE013063) (294 aa) fasta scores: E(): 1.5e-25, 34.31% id in 271 aa; putative transcriptional regulator 1431672 3285913 BF9343_1115 Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_210843.1 1430776 D 272559 CDS YP_210844.1 60680700 3286297 1431776..1432744 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4609 SWALL:AAO79714 (EMBL:AE016945) (330 aa) fasta scores: E(): 2.5e-110, 87.22% id in 321 aa, and to Vibrio parahaemolyticus hypothetical protein vp0936 SWALL:BAC59199 (EMBL:AP005076) (310 aa) fasta scores: E(): 2.8e-51, 49.19% id in 309 aa, and to Shewanella oneidensis conserved hypothetical protein so4708 SWALL:Q8E8F7 (EMBL:AE015902) (316 aa) fasta scores: E(): 6.1e-49, 47.63% id in 296 aa; putative transmembrane protein 1432744 3286297 BF9343_1116 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210844.1 1431776 D 272559 CDS YP_210845.1 60680701 3286365 complement(1432829..1433512) 1 NC_003228.3 no significant database matches; hypothetical protein 1433512 3286365 BF9343_1117 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210845.1 1432829 R 272559 CDS YP_210846.1 60680702 3286149 complement(1433519..1433974) 1 NC_003228.3 no significant database matches; hypothetical protein 1433974 3286149 BF9343_1118 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210846.1 1433519 R 272559 CDS YP_210847.1 60680703 3287996 complement(1434027..1434542) 1 NC_003228.3 Similar to Bacteroides fragilis putative RNA polymerase ECF-type sigma factor RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 5.9e-06, 27.27% id in 154 aa, and to Bacteroides thetaiotaomicron putative RNA polymerase ECF-type sigma factor BT0326 SWALL:AAO75433 (EMBL:AE016927) (173 aa) fasta scores: E(): 4.7e-15, 36.99% id in 173 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3396 SWALL:AAO78502 (EMBL:AE016940) (169 aa) fasta scores: E(): 2.2e-12, 33.33% id in 171 aa; putative RNA polymerase ECF-type sigma factor 1434542 3287996 BF9343_1119 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210847.1 1434027 R 272559 CDS YP_210848.1 60680704 3288001 1434627..1434908 1 NC_003228.3 no significant database matches; hypothetical protein 1434908 3288001 BF9343_1120 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210848.1 1434627 D 272559 CDS YP_210849.3 589285994 3287514 complement(1434974..1435930) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis RecA protein SWALL:RECA_BACFR (SWALL:P22841) (318 aa) fasta scores: E(): 3.6e-107, 99.68% id in 318 aa, and to Bacteroides thetaiotaomicron RecA protein or BT4610 SWALL:RECA_BACTN (SWALL:Q45791) (344 aa) fasta scores: E(): 4e-100, 93.67% id in 316 aa, and to Prevotella ruminicola RecA protein SWALL:RECA_PRERU (SWALL:Q59717) (340 aa) fasta scores: E(): 5.3e-87, 80.5% id in 318 aa; recombinase A (recA) 1435930 3287514 BF9343_1121 Bacteroides fragilis NCTC 9343 recombinase A (recA) YP_210849.3 1434974 R 272559 CDS YP_210850.1 60680706 3288976 complement(1436028..1436474) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri bacterioferritin comigratory protein Bcp or B2480 or C3008 or Z3739 or ECS3342 or SF2523 or s2673 SWALL:BCP_ECOLI (SWALL:P23480) (156 aa) fasta scores: E(): 3.7e-23, 43.91% id in 148 aa, and to Bacteroides thetaiotaomicron putative bacterioferritin co-migratory protein BT4611 SWALL:AAO79716 (EMBL:AE016945) (151 aa) fasta scores: E(): 1.9e-51, 89.79% id in 147 aa, and to Chlorobium tepidum bacterioferritin comigratory protein, thiol peroxidase, putative Bcp-1 or CT0662 SWALL:Q8KEM5 (EMBL:AE012839) (156 aa) fasta scores: E(): 2.4e-28, 51.35% id in 148 aa; putative bacterioferritin comigratory protein 1436474 bcp 3288976 bcp Bacteroides fragilis NCTC 9343 putative bacterioferritin comigratory protein YP_210850.1 1436028 R 272559 CDS YP_210851.1 60680707 3287602 complement(1436557..1437750) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4612 SWALL:AAO79717 (EMBL:AE016945) (397 aa) fasta scores: E(): 1.3e-158, 96.97% id in 397 aa, and to Synechocystis sp. hypothetical protein Slr0049 SWALL:Q55131 (EMBL:D64001) (398 aa) fasta scores: E(): 4.5e-111, 66.15% id in 393 aa, and to Bacillus halodurans hypothetical protein BH3957 SWALL:Q9K5X9 (EMBL:AP001520) (410 aa) fasta scores: E(): 1.5e-105, 63.15% id in 399 aa; hypothetical protein 1437750 3287602 BF9343_1123 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210851.1 1436557 R 272559 CDS YP_210852.1 60680708 3287240 complement(1437845..1439095) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4613 SWALL:AAO79718 (EMBL:AE016945) (427 aa) fasta scores: E(): 1.3e-48, 48.25% id in 429 aa; hypothetical protein 1439095 3287240 BF9343_1124 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210852.1 1437845 R 272559 CDS YP_210853.1 60680709 3287271 1439220..1440011 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4614 SWALL:AAO79719 (EMBL:AE016945) (262 aa) fasta scores: E(): 2.9e-73, 71.75% id in 262 aa, and to Deinococcus radiodurans hypothetical protein Dr1940 SWALL:Q9RT29 (EMBL:AE002033) (403 aa) fasta scores: E(): 8e-08, 28.7% id in 223 aa; hypothetical protein 1440011 3287271 BF9343_1125 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210853.1 1439220 D 272559 CDS YP_210854.1 60680710 3288428 complement(1440208..1441212) 1 NC_003228.3 Similar to Yersinia pestis hemin transport system permease protein HmuU or YPO0280 or Y0540 SWALL:HMUU_YERPE (SWALL:Q56992) (334 aa) fasta scores: E(): 8.2e-33, 37.3% id in 327 aa, and to Chlorobium tepidum iron CT0411 SWALL:Q8KFB6 (EMBL:AE012818) (362 aa) fasta scores: E(): 1e-52, 46.52% id in 331 aa, and to Anabaena sp. permease protein of iron ALR4032 SWALL:Q8YQ08 (EMBL:AP003595) (362 aa) fasta scores: E(): 5.3e-52, 49.39% id in 328 aa. Note: Also similar to BF2247 (346 aa) fasta scores: E(): 5.2e-48, 41.212% identity in 330 aa overlap; putative iron transport-related family system permease protein 1441212 3288428 BF9343_1126 Bacteroides fragilis NCTC 9343 putative iron transport-related family system permease protein YP_210854.1 1440208 R 272559 CDS YP_210855.1 60680711 3288366 complement(1441209..1442351) 1 NC_003228.3 Similar to Anabaena sp. periplasmic-binding protein of ABC transporter ALR4031 SWALL:Q8YQ09 (EMBL:AP003595) (426 aa) fasta scores: E(): 2.5e-46, 35.21% id in 389 aa, and to Bacteroides thetaiotaomicron Fe3+ ABC transporter, periplasmic iron-binding protein BT1952 SWALL:AAO77059 (EMBL:AE016934) (379 aa) fasta scores: E(): 4e-40, 36.17% id in 376 aa, and to Chlorobium tepidum iron CT0410 SWALL:Q8KFB7 (EMBL:AE012818) (403 aa) fasta scores: E(): 1.4e-37, 34.11% id in 384 aa; putative iron-related ABC transport periplasmic binding protein 1442351 3288366 BF9343_1127 Bacteroides fragilis NCTC 9343 putative iron-related ABC transport periplasmic binding protein YP_210855.1 1441209 R 272559 CDS YP_210856.1 60680712 3288057 1442881..1445043 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron polysialic acid transport protein KpsD precursor BT1723 SWALL:AAO76830 (EMBL:AE016933) (789 aa) fasta scores: E(): 1.1e-141, 53.77% id in 688 aa, to Bacteroides thetaiotaomicron putative capsule polysaccharide export protein BT1356 SWALL:AAO76463 (EMBL:AE016931) (789 aa) fasta scores: E(): 1e-142, 52.83% id in 706 aa, to Bacteroides thetaiotaomicron polysialic acid transport protein KpsD precursor BT1654 SWALL:AAO76761 (EMBL:AE016932) (789 aa) fasta scores: E(): 1.6e-140, 53.19% id in 688 aa, and to Vibrio parahaemolyticus OtnA protein VP0220 SWALL:BAC58483 (EMBL:AP005073) (889 aa) fasta scores: E(): 1.6e-33, 25.35% id in 781 aa. CDS is truncated at the N-terminus; putative polysialic acid transport protein 1445043 3288057 BF9343_1128 Bacteroides fragilis NCTC 9343 putative polysialic acid transport protein YP_210856.1 1442881 D 272559 CDS YP_210857.1 60680713 3288071 1445051..1445575 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transcriptional regulator BT1725 SWALL:AAO76832 (EMBL:AE016933) (192 aa) fasta scores: E(): 2.5e-08, 25% id in 164 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1656 SWALL:AAO76763 (EMBL:AE016932) (192 aa) fasta scores: E(): 3.4e-08, 24.39% id in 164 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT2886 SWALL:AAO77992 (EMBL:AE016937) (168 aa) fasta scores: E(): 4.1e-08, 25.44% id in 169 aa; putative transcriptional regulator 1445575 3288071 BF9343_1129 Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_210857.1 1445051 D 272559 CDS YP_210858.1 60680714 3285109 1445996..1447915 1 NC_003228.3 Similar to Borrelia burgdorferi chaperone protein DnaK or BB0518 SWALL:DNAK_BORBU (SWALL:P28608) (635 aa) fasta scores: E(): 9.2e-123, 61.79% id in 636 aa, and to Bacteroides thetaiotaomicron chaperone protein DnaK BT4615 SWALL:AAO79720 (EMBL:AE016945) (638 aa) fasta scores: E(): 3.1e-201, 95.61% id in 639 aa, and to Porphyromonas gingivalis chaperone protein DnaK SWALL:DNAK_PORGI (SWALL:Q9ZAD3) (640 aa) fasta scores: E(): 7.1e-168, 78.43% id in 640 aa; putative chaperone protein 1447915 dnaK2 3285109 dnaK2 Bacteroides fragilis NCTC 9343 putative chaperone protein YP_210858.1 1445996 D 272559 CDS YP_210859.1 60680715 3288522 1448009..1449637 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron voltage-gated chloride channel protein BT4650 SWALL:AAO79755 (EMBL:AE016946) (524 aa) fasta scores: E(): 3.8e-172, 86.43% id in 516 aa, and to Fusobacterium nucleatum chloride channel protein FN1727 SWALL:Q8RI84 (EMBL:AE010477) (521 aa) fasta scores: E(): 9.5e-49, 32.68% id in 517 aa, and to Lactococcus lactis hypothetical protein Yrbd or ll1664 SWALL:Q9CF17 (EMBL:AE006397) (512 aa) fasta scores: E(): 1.1e-40, 30.27% id in 512 aa; putative transporter periplasmic binding protein 1449637 3288522 BF9343_1131 Bacteroides fragilis NCTC 9343 putative transporter periplasmic binding protein YP_210859.1 1448009 D 272559 CDS YP_210860.1 60680716 3289131 complement(1449631..1450467) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 endonuclease IV Nfo or B2159 or Z3416 or ECS3051 SWALL:END4_ECOLI (SWALL:P12638) (285 aa) fasta scores: E(): 2.1e-72, 66.54% id in 278 aa, and to Bacteroides thetaiotaomicron endonuclease IV BT4651 SWALL:Q89YT0 (EMBL:AE016946) (277 aa) fasta scores: E(): 1e-97, 86.49% id in 274 aa, and to Salmonella typhi probable endonuclease IV Nfo or STY2438 or t0652 SWALL:END4_SALTI (SWALL:Q8Z593) (285 aa) fasta scores: E(): 2.4e-74, 68.7% id in 278 aa; putative endonuclease IV 1450467 nfo 3289131 nfo Bacteroides fragilis NCTC 9343 putative endonuclease IV YP_210860.1 1449631 R 272559 CDS YP_210861.3 589285995 3285261 complement(1450596..1451939) 1 NC_003228.3 Similar to Azospirillum brasilense tryptophan synthase beta subunit TrpB SWALL:Q9LAG9 (EMBL:AF139661) (405 aa) fasta scores: E(): 1.5e-18, 30.54% id in 406 aa, and to Bacteroides thetaiotaomicron tryptophan synthase beta chain BT4664 SWALL:Q89YR7 (EMBL:AE016946) (426 aa) fasta scores: E(): 2.9e-158, 91.52% id in 425 aa, and to Arabidopsis thaliana tryptophan synthase beta chain at5g38530 SWALL:Q9FFW8 (EMBL:AB005231) (506 aa) fasta scores: E(): 8e-99, 57.85% id in 439 aa; putative tryptophan synthase beta subunit 1451939 trpB 3285261 trpB Bacteroides fragilis NCTC 9343 putative tryptophan synthase beta subunit YP_210861.3 1450596 R 272559 CDS YP_210862.1 60680718 3289205 1452099..1453934 1 NC_003228.3 Similar to Vibrio parahaemolyticus KtrB or vp0905 SWALL:BAC59168 (EMBL:AP005076) (455 aa) fasta scores: E(): 2.5e-22, 35.66% id in 457 aa, and to Bacteroides thetaiotaomicron K+ uptake protein BT4665 SWALL:AAO79770 (EMBL:AE016946) (609 aa) fasta scores: E(): 1e-202, 81.66% id in 611 aa, and to Synechococcus elongatus Na+-transporting ATP synthase tll0303 SWALL:Q8DM21 (EMBL:AP005369) (454 aa) fasta scores: E(): 1.5e-42, 33.77% id in 456 aa; putative transmembrane K+/Na+ uptake protein 1453934 ktrB 3289205 ktrB Bacteroides fragilis NCTC 9343 putative transmembrane K+/Na+ uptake protein YP_210862.1 1452099 D 272559 CDS YP_210863.1 60680719 3289193 1453950..1454636 1 NC_003228.3 Similar to Vibrio alginolyticus KtrA protein SWALL:O87952 (EMBL:D89592) (220 aa) fasta scores: E(): 1.1e-10, 29.5% id in 183 aa, and to Bacteroides thetaiotaomicron putative K+ uptake system protein BT4666 SWALL:AAO79771 (EMBL:AE016946) (228 aa) fasta scores: E(): 1.2e-65, 79.82% id in 228 aa, and to Aquifex aeolicus hypothetical protein Aq_1503 SWALL:O67473 (EMBL:AE000743) (218 aa) fasta scores: E(): 3.9e-16, 35.75% id in 179 aa; putative K+/Na+ uptake protein 1454636 ktrA 3289193 ktrA Bacteroides fragilis NCTC 9343 putative K+/Na+ uptake protein YP_210863.1 1453950 D 272559 CDS YP_210864.1 60680720 3289146 complement(1454734..1456194) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis catalase KatA or KatB SWALL:CATA_BACFR (SWALL:P45737) (486 aa) fasta scores: E(): 2.2e-206, 100% id in 486 aa, and to Bacteroides thetaiotaomicron catalase BT1971 SWALL:AAO77078 (EMBL:AE016934) (488 aa) fasta scores: E(): 1.5e-192, 91.18% id in 488 aa, and to Porphyromonas gulae catalase hp2 Kat SWALL:Q8GRA4 (EMBL:AB083039) (485 aa) fasta scores: E(): 4.1e-160, 76.9% id in 485 aa; catalase 1456194 katA 3289146 katA Bacteroides fragilis NCTC 9343 catalase YP_210864.1 1454734 R 272559 CDS YP_210865.1 60680721 3288090 complement(1456665..1459202) 1 NC_003228.3 Similar to Bacillus thermoamyloliquefaciens alpha-glucosidase III Bthagl3 SWALL:Q9AQR9 (EMBL:AB038780) (770 aa) fasta scores: E(): 1.4e-40, 27.86% id in 628 aa, and to Bifidobacterium longum probable pentosidase or hexosidase bl1334 SWALL:Q8G4P4 (EMBL:AE014762) (880 aa) fasta scores: E(): 8.3e-92, 38.33% id in 767 aa, and to Streptococcus mutans putative alpha-glucosidase, glycosyl hydrolase SMU.104 SWALL:Q8DWF5 (EMBL:AE014862) (731 aa) fasta scores: E(): 2.1e-82, 34.95% id in 738 aa; putative alpha-glucosidase, glycosylhydrolase 1459202 3288090 BF9343_1137 Bacteroides fragilis NCTC 9343 putative alpha-glucosidase, glycosylhydrolase YP_210865.1 1456665 R 272559 CDS YP_210866.1 60680722 3288852 1459337..1459882 1 NC_003228.3 Similar to Bacillus subtilis RNA polymerase sigma factor SigW or BSU01730 SWALL:SIGW_BACSU (SWALL:Q45585) (187 aa) fasta scores: E(): 3.3e-06, 24.11% id in 170 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT2198 SWALL:AAO77305 (EMBL:AE016935) (193 aa) fasta scores: E(): 3.5e-27, 45.14% id in 175 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4070 SWALL:AAO79175 (EMBL:AE016943) (174 aa) fasta scores: E(): 1.5e-23, 45.18% id in 166 aa; putative ECF-type RNA polymerase sigma factor 1459882 3288852 BF9343_1138 Bacteroides fragilis NCTC 9343 putative ECF-type RNA polymerase sigma factor YP_210866.1 1459337 D 272559 CDS YP_210867.1 60680723 3288641 1459939..1460940 1 NC_003228.3 Similar to Bacteroides ovatus xylosidase/arabinosidase xsa SWALL:XYLB_BACOV (SWALL:P49943) (325 aa) fasta scores: E(): 8.9e-09, 29.3% id in 331 aa, and to Bacteroides thetaiotaomicron arabinan endo-1,5-alpha-L-arabinosidase A precursor BT3516 SWALL:AAO78622 (EMBL:AE016941) (637 aa) fasta scores: E(): 7.5e-93, 63.63% id in 330 aa, and to Bacteroides thetaiotaomicron endo-1,4-beta-xylanase D precursor BT3675 SWALL:AAO78780 (EMBL:AE016941) (333 aa) fasta scores: E(): 2.2e-29, 38.37% id in 344 aa; putative xylosidase/arabinosidase 1460940 3288641 BF9343_1139 Bacteroides fragilis NCTC 9343 putative xylosidase/arabinosidase YP_210867.1 1459939 D 272559 CDS YP_210868.1 60680724 3289273 complement(1461124..1462026) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis beta-lactamase CepA-103 or CepA-85 SWALL:Q57150 (EMBL:U05888) (300 aa) fasta scores: E(): 3.5e-119, 100% id in 300 aa, and similar to previously sequenced Bacteroides fragilis beta-lactamase cepA-44 SWALL:Q45116 (EMBL:U05885) (300 aa) fasta scores: E(): 2e-118, 99% id in 300 aa, and to previously sequenced Bacteroides fragilis cephalosporinase precursor cepA or cepA-14 SWALL:Q57509 (EMBL:L13472) (300 aa) fasta scores: E(): 3.2e-118, 99% id in 300 aa; beta-lactamase 1462026 cepA 3289273 cepA Bacteroides fragilis NCTC 9343 beta-lactamase YP_210868.1 1461124 R 272559 CDS YP_210869.1 60680725 3288721 1462080..1462304 1 NC_003228.3 no significant database matches; hypothetical protein 1462304 3288721 BF9343_1141 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210869.1 1462080 D 272559 CDS YP_210870.1 60680726 3288859 1462873..1463802 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 1.9e-12, 26.84% id in 231 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2197 SWALL:AAO77304 (EMBL:AE016935) (322 aa) fasta scores: E(): 3.1e-41, 40.45% id in 309 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2561 SWALL:AAO77668 (EMBL:AE016936) (312 aa) fasta scores: E(): 1.9e-23, 35.92% id in 309 aa; putative anti-sigma factor 1463802 3288859 BF9343_1142 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210870.1 1462873 D 272559 CDS YP_210871.1 60680727 3288095 1463991..1467362 1 NC_003228.3 Similar to Bacteroides fragilis outer membrane protein Omp117 SWALL:Q9AF86 (EMBL:AF364409) (1089 aa) fasta scores: E(): 1.1e-40, 27.18% id in 1181 aa, and from codon 120 to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0317 SWALL:AAO75424 (EMBL:AE016927) (1062 aa) fasta scores: E(): 2.8e-49, 30.21% id in 1079 aa, and from codon 192 to Bacteroides thetaiotaomicron outer membrane protein omp121 BT2260 SWALL:AAO77367 (EMBL:AE016935) (959 aa) fasta scores: E(): 3.1e-45, 29.42% id in 999 aa; putative outer membrane protein 1467362 3288095 BF9343_1143 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210871.1 1463991 D 272559 CDS YP_210872.1 60680728 3285894 1467374..1468897 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1039 SWALL:AAO76146 (EMBL:AE016930) (527 aa) fasta scores: E(): 1.2e-10, 24.01% id in 483 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1281 SWALL:AAO76388 (EMBL:AE016931) (531 aa) fasta scores: E(): 2.3e-08, 23.7% id in 405 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2259 SWALL:AAO77366 (EMBL:AE016935) (488 aa) fasta scores: E(): 3.9e-08, 22.67% id in 516 aa; hypothetical protein 1468897 3285894 BF9343_1144 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210872.1 1467374 D 272559 CDS YP_210873.1 60680729 3285154 1468985..1469971 1 NC_003228.3 Similar to Staphylococcus epidermidis phosphohydrolases, Icc family se1104 SWALL:Q8CSL3 (EMBL:AE016747) (284 aa) fasta scores: E(): 1.4e-21, 30.51% id in 272 aa, and to Bacteroides thetaiotaomicron putative phosphohydrolase, Icc family BT3885 SWALL:AAO78990 (EMBL:AE016942) (335 aa) fasta scores: E(): 1.4e-78, 60.85% id in 327 aa, and to Clostridium acetobutylicum predicted phosphohydrolase, Icc family CAC2806 SWALL:Q97FD4 (EMBL:AE007778) (317 aa) fasta scores: E(): 1.9e-30, 37.07% id in 321 aa; putative phosphohydrolase, Icc family 1469971 3285154 BF9343_1145 Bacteroides fragilis NCTC 9343 putative phosphohydrolase, Icc family YP_210873.1 1468985 D 272559 CDS YP_210874.1 60680730 3286863 1470013..1470912 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3023 SWALL:AAO78129 (EMBL:AE016938) (305 aa) fasta scores: E(): 8.8e-78, 66.54% id in 278 aa, and to Arabidopsis thaliana nucleotide pyrophosphatase-like protein t16l4.210 or at4g29700 SWALL:Q9SU81 (EMBL:AL079344) (461 aa) fasta scores: E(): 4.1e-08, 25.11% id in 227 aa, and to Caulobacter crescentus type I phosphodiesterase/nucleotide pyrophosphatase family protein CC1277 SWALL:Q9A8S4 (EMBL:AE005802) (451 aa) fasta scores: E(): 2e-07, 23.04% id in 243 aa; possible phosphodiesterase/nucleotide pyrophosphatase-like protein 1470912 3286863 BF9343_1146 Bacteroides fragilis NCTC 9343 possible phosphodiesterase/nucleotide pyrophosphatase-like protein YP_210874.1 1470013 D 272559 CDS YP_210875.1 60680731 3287167 1470967..1471992 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0169 SWALL:AAO75276 (EMBL:AE016926) (351 aa) fasta scores: E(): 1.6e-50, 42.53% id in 355 aa, and to Caenorhabditis elegans hypothetical 38.1 kDa protein f14f9.5 SWALL:Q9GUC9 (EMBL:AF024492) (332 aa) fasta scores: E(): 5.4e-14, 25.71% id in 350 aa; putative endonuclease/exonuclease/phosphatase family protein 1471992 3287167 BF9343_1147 Bacteroides fragilis NCTC 9343 putative endonuclease/exonuclease/phosphatase family protein YP_210875.1 1470967 D 272559 CDS YP_210876.1 60680732 3289105 complement(1472142..1473692) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis alkyl hydroperoxide reductase subunit F AhpF SWALL:Q9RQ71 (EMBL:AF129406) (516 aa) fasta scores: E(): 4.1e-176, 100% id in 516 aa, and to Bacteroides thetaiotaomicron alkyl hydroperoxide reductase subunit F BT2811 SWALL:AAO77917 (EMBL:AE016937) (523 aa) fasta scores: E(): 9.4e-144, 78.48% id in 516 aa, and to Ralstonia solanacearum probable alkyl hydroperoxide reductase AhpF or RSP0246 or RS03720 SWALL:Q8XT69 (EMBL:AL646077) (524 aa) fasta scores: E(): 2e-80, 47.78% id in 519 aa, and to Pseudomonas putida alkyl hydroperoxide reductase subunit F AhpF or PP2440 SWALL:AHPF_PSEPK (SWALL:O82864) (520 aa) fasta scores: E(): 2.5e-80, 47.58% id in 517 aa; alkyl hydroperoxide reductase subunit F 1473692 ahpF 3289105 ahpF Bacteroides fragilis NCTC 9343 alkyl hydroperoxide reductase subunit F YP_210876.1 1472142 R 272559 CDS YP_210877.1 60680733 3289101 complement(1473793..1474359) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis alkyl hydroperoxide reductase subunit C ahpC SWALL:Q9RQ72 (EMBL:AF129406) (188 aa) fasta scores: E(): 1.5e-71, 98.93% id in 188 aa, and to Bacteroides thetaiotaomicron alkyl hydroperoxide reductase c22 protein BT2812 SWALL:AAO77918 (EMBL:AE016937) (188 aa) fasta scores: E(): 2.4e-63, 85.63% id in 188 aa, and to Shewanella oneidensis alkyl hydroperoxide reductase, subunit AhpC or so0958 SWALL:Q8EI86 (EMBL:AE015541) (189 aa) fasta scores: E(): 4.5e-50, 66.84% id in 187 aa; alkyl hydroperoxide reductase C subunit 1474359 ahpC 3289101 ahpC Bacteroides fragilis NCTC 9343 alkyl hydroperoxide reductase C subunit YP_210877.1 1473793 R 272559 CDS YP_210878.1 60680734 3288123 1474779..1474913 1 NC_003228.3 no significant database matches; hypothetical protein 1474913 3288123 BF9343_1150 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210878.1 1474779 D 272559 CDS YP_210879.1 60680735 3287203 1475297..1475764 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3769 SWALL:AAO78874 (EMBL:AE016942) (143 aa) fasta scores: E(): 1.6e-12, 55.76% id in 156 aa; hypothetical protein 1475764 3287203 BF9343_1151 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210879.1 1475297 D 272559 CDS YP_210880.1 60680736 3288866 1475914..1476468 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4674 SWALL:AAO79779 (EMBL:AE016946) (183 aa) fasta scores: E(): 4.1e-41, 61.87% id in 181 aa; hypothetical protein 1476468 3288866 BF9343_1152 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210880.1 1475914 D 272559 CDS YP_210881.1 60680737 3288586 1476586..1477029 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative periplasmic protein BT4676 SWALL:Q89YQ5 (EMBL:AE016946) (147 aa) fasta scores: E(): 3.8e-33, 62.58% id in 147 aa, and to Bacteroides thetaiotaomicron putative periplasmic protein BT0923 SWALL:Q8A994 (EMBL:AE016929) (145 aa) fasta scores: E(): 7.2e-15, 39.43% id in 142 aa; hypothetical protein 1477029 3288586 BF9343_1153 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210881.1 1476586 D 272559 CDS YP_210882.1 60680738 3288918 1477067..1477567 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4677 SWALL:AAO79782 (EMBL:AE016946) (166 aa) fasta scores: E(): 1.1e-36, 57.57% id in 165 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0922 SWALL:AAO76029 (EMBL:AE016929) (293 aa) fasta scores: E(): 2.5e-16, 38.55% id in 166 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0772 SWALL:AAO75879 (EMBL:AE016929) (158 aa) fasta scores: E(): 8.4e-15, 37.42% id in 163 aa; hypothetical protein 1477567 3288918 BF9343_1154 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210882.1 1477067 D 272559 CDS YP_210883.1 60680739 3287412 complement(1477671..1478879) 1 NC_003228.3 Similar to Escherichia coli L-serine dehydratase TdcG or B3111/b3112 SWALL:TDCG_ECOLI (SWALL:P42630) (454 aa) fasta scores: E(): 3.4e-42, 42.12% id in 451 aa, and to Bacteroides thetaiotaomicron L-serine dehydratase BT4678 SWALL:AAO79783 (EMBL:AE016946) (411 aa) fasta scores: E(): 1.4e-147, 89.8% id in 402 aa, and to Fusobacterium nucleatum L-serine dehydratase FN1106 SWALL:Q8REJ5 (EMBL:AE010615) (408 aa) fasta scores: E(): 3e-84, 54.5% id in 400 aa; putative L-serine dehydratase 1478879 tdcG 3287412 tdcG Bacteroides fragilis NCTC 9343 putative L-serine dehydratase YP_210883.1 1477671 R 272559 CDS YP_210884.1 60680740 3289348 complement(1478936..1479997) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron Mg2+/Co2+ transport protein BT4679 SWALL:AAO79784 (EMBL:AE016946) (350 aa) fasta scores: E(): 3e-107, 78.75% id in 353 aa, and to Synechocystis sp. magnesium and cobalt transport protein sll0507 SWALL:Q55481 (EMBL:D64006) (387 aa) fasta scores: E(): 2.5e-32, 32.14% id in 336 aa, and to Methanosarcina acetivorans magnesium Mg CorA or Ma1721 SWALL:Q8TQ31 (EMBL:AE010846) (356 aa) fasta scores: E(): 6.9e-31, 36.61% id in 355 aa; putative transmembrane magnesium and cobalt transporter protein 1479997 3289348 BF9343_1156 Bacteroides fragilis NCTC 9343 putative transmembrane magnesium and cobalt transporter protein YP_210884.1 1478936 R 272559 CDS YP_210885.1 60680741 3285119 complement(1480010..1482508) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron DNA mismatch repair protein MutS BT4680 SWALL:AAO79785 (EMBL:AE016946) (833 aa) fasta scores: E(): 0, 88.46% id in 832 aa, and to Chlorobium tepidum DNA mismatch binding protein MutS2 or CT0334 SWALL:Q8KFJ2 (EMBL:AE012812) (798 aa) fasta scores: E(): 8.2e-49, 31.72% id in 829 aa, and to Thermoanaerobacter tengcongensis MutS2 protein or TTE1685 SWALL:MUS2_THETN (SWALL:Q8R9D0) (790 aa) fasta scores: E(): 2.3e-46, 32.84% id in 825 aa; putative DNA mismatch repair MutS protein 1482508 3285119 BF9343_1157 Bacteroides fragilis NCTC 9343 putative DNA mismatch repair MutS protein YP_210885.1 1480010 R 272559 CDS YP_210886.1 60680742 3288898 1483022..1484260 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis transposase BipH SWALL:Q9ZI85 (EMBL:AF038866) (410 aa) fasta scores: E(): 3e-71, 49.75% id in 404 aa, and to Bacteroides thetaiotaomicron transposase BT0076 SWALL:AAO75183 (EMBL:AE016926) (410 aa) fasta scores: E(): 1.2e-130, 84.22% id in 412 aa, and to Bacteroides thetaiotaomicron transposase BT2277 SWALL:AAO77384 (EMBL:AE016935) (419 aa) fasta scores: E(): 2.1e-72, 48.54% id in 412 aa; putative transposase 1484260 3288898 BF9343_1158 Bacteroides fragilis NCTC 9343 putative transposase YP_210886.1 1483022 D 272559 CDS YP_210887.1 60680743 3285883 1484335..1484877 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0077 SWALL:AAO75184 (EMBL:AE016926) (168 aa) fasta scores: E(): 9.6e-22, 66.66% id in 180 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3031 SWALL:AAO78137 (EMBL:AE016938) (208 aa) fasta scores: E(): 2.3e-12, 44.9% id in 216 aa; hypothetical protein 1484877 3285883 BF9343_1159 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210887.1 1484335 D 272559 CDS YP_210888.1 60680744 3287982 1485136..1485588 1 NC_003228.3 Similar to Escherichia coli DNA repair protein RadC or B3638 SWALL:RADC_ECOLI (SWALL:P25531) (222 aa) fasta scores: E(): 4.2e-11, 34.58% id in 133 aa, and to Bacteroides thetaiotaomicron putative DNA repair protein BT0078 SWALL:AAO75185 (EMBL:AE016926) (150 aa) fasta scores: E(): 2.8e-54, 94% id in 150 aa. Note: Also similar to BF1780 (148 aa) fasta scores: E(): 5.3e-32, 55.333% identity in 150 aa overlap, and to BF0428 (231 aa) fasta scores: E(): 3.7e-17, 41.221% identity in 131 aa overlap; putative DNA repair protein 1485588 radC2 3287982 radC2 Bacteroides fragilis NCTC 9343 putative DNA repair protein YP_210888.1 1485136 D 272559 CDS YP_210889.1 60680745 3285522 1485996..1486529 1 NC_003228.3 Similar to Escherichia coli anti-restriction protein ArdA SWALL:Q9RM41 (EMBL:AJ238399) (166 aa) fasta scores: E(): 2.1e-16, 41.04% id in 173 aa, and to Bacteroides thetaiotaomicron putative anti-restriction protein BT0079 SWALL:AAO75186 (EMBL:AE016926) (177 aa) fasta scores: E(): 3.2e-66, 96.61% id in 177 aa, and to Yersinia pestis antirestriction protein homolog Y5186 or Y1090 or Ypmt1.61C SWALL:O68792 (EMBL:AF053947) (168 aa) fasta scores: E(): 4.8e-18, 42.37% id in 177 aa; putative anti-restriction protein 1486529 3285522 BF9343_1161 Bacteroides fragilis NCTC 9343 putative anti-restriction protein YP_210889.1 1485996 D 272559 CDS YP_210890.1 60680746 3285523 1486573..1486785 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0081 SWALL:AAO75188 (EMBL:AE016926) (64 aa) fasta scores: E(): 1.3e-15, 64.7% id in 68 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2286 SWALL:AAO77393 (EMBL:AE016935) (72 aa) fasta scores: E(): 1.6e-07, 50.74% id in 67 aa; hypothetical protein 1486785 3285523 BF9343_1162 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210890.1 1486573 D 272559 CDS YP_210891.1 60680747 3287123 1486810..1487025 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0081 SWALL:AAO75188 (EMBL:AE016926) (64 aa) fasta scores: E(): 1.3e-15, 64.7% id in 68 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2286 SWALL:AAO77393 (EMBL:AE016935) (72 aa) fasta scores: E(): 1.6e-07, 50.74% id in 67 aa; hypothetical protein 1487025 3287123 BF9343_1163 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210891.1 1486810 D 272559 CDS YP_210892.1 60680748 3287125 1487048..1487527 1 NC_003228.3 no significant database matches; hypothetical protein 1487527 3287125 BF9343_1164 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210892.1 1487048 D 272559 CDS YP_210893.1 60680749 3287124 1487669..1487854 1 NC_003228.3 no significant database matches; hypothetical protein 1487854 3287124 BF9343_1165 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210893.1 1487669 D 272559 CDS YP_210894.1 60680750 3287906 1488384..1489880 1 NC_003228.3 no significant database matches; hypothetical protein 1489880 3287906 BF9343_1168 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210894.1 1488384 D 272559 CDS YP_210895.1 60680751 3286204 complement(1490025..1490342) 1 NC_003228.3 no significant database matches; hypothetical protein 1490342 3286204 BF9343_1169 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210895.1 1490025 R 272559 CDS YP_210896.1 60680752 3287570 complement(1490355..1490804) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0084 SWALL:AAO75191 (EMBL:AE016926) (147 aa) fasta scores: E(): 4.1e-56, 93.87% id in 147 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2287 SWALL:AAO77394 (EMBL:AE016935) (145 aa) fasta scores: E(): 1.2e-28, 52.44% id in 143 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2593 SWALL:AAO77700 (EMBL:AE016936) (161 aa) fasta scores: E(): 3.3e-27, 50.67% id in 148 aa, and to Bacteroides thetaiotaomicron TraQ SWALL:Q9F6T2 (EMBL:AF289050) (165 aa) fasta scores: E(): 1.9e-22, 47.36% id in 133 aa; conserved hypothetical protein found in conjugate transposon 1490804 3287570 BF9343_1170 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_210896.1 1490355 R 272559 CDS YP_210897.1 60680753 3287459 complement(1490826..1491404) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0085 SWALL:AAO75192 (EMBL:AE016926) (192 aa) fasta scores: E(): 2.3e-80, 100% id in 192 aa, and to Bacteroides thetaiotaomicron TraO SWALL:Q9F6T4 (EMBL:AF289050) (191 aa) fasta scores: E(): 3.5e-44, 59.37% id in 192 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2288 SWALL:AAO77395 (EMBL:AE016935) (194 aa) fasta scores: E(): 4.2e-44, 55.44% id in 193 aa; conserved hypothetical protein found in conjugate transposon 1491404 3287459 BF9343_1171 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_210897.1 1490826 R 272559 CDS YP_210898.1 60680754 3288308 complement(1491407..1492315) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0086 SWALL:AAO75193 (EMBL:AE016926) (302 aa) fasta scores: E(): 1.8e-116, 99% id in 302 aa, and to Bacteroides thetaiotaomicron TraN SWALL:Q9F6T5 (EMBL:AF289050) (329 aa) fasta scores: E(): 3.9e-70, 55.62% id in 329 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2595 SWALL:AAO77702 (EMBL:AE016936) (309 aa) fasta scores: E(): 1.6e-69, 54.75% id in 305 aa; conserved hypothetical protein found in conjugate transposon 1492315 3288308 BF9343_1172 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_210898.1 1491407 R 272559 CDS YP_210899.1 60680755 3288314 complement(1492356..1493729) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0087 SWALL:AAO75194 (EMBL:AE016926) (461 aa) fasta scores: E(): 3.9e-145, 94.79% id in 461 aa, and to Bacteroides thetaiotaomicron TraM SWALL:Q9F6T6 (EMBL:AF289050) (452 aa) fasta scores: E(): 4.1e-64, 48.18% id in 467 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2290 SWALL:AAO77397 (EMBL:AE016935) (441 aa) fasta scores: E(): 9e-40, 45.8% id in 465 aa; conserved hypothetical protein found in conjugate transposon 1493729 3288314 BF9343_1173 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_210899.1 1492356 R 272559 CDS YP_210900.1 60680756 3288297 complement(1493704..1494009) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0088 SWALL:AAO75195 (EMBL:AE016926) (101 aa) fasta scores: E(): 3.2e-36, 93.06% id in 101 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2291 SWALL:AAO77398 (EMBL:AE016935) (108 aa) fasta scores: E(): 2.8e-13, 45.83% id in 96 aa; conserved hypothetical protein found in conjugate transposon 1494009 3288297 BF9343_1174 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_210900.1 1493704 R 272559 CDS YP_210901.1 60680757 3288112 complement(1494013..1494636) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0089 SWALL:AAO75196 (EMBL:AE016926) (207 aa) fasta scores: E(): 1.3e-79, 98.06% id in 207 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2292 SWALL:AAO77399 (EMBL:AE016935) (207 aa) fasta scores: E(): 2.9e-63, 73.91% id in 207 aa; conserved hypothetical protein found in conjugate transposon 1494636 3288112 BF9343_1175 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_210901.1 1494013 R 272559 CDS YP_210902.1 60680758 3288298 complement(1494649..1495674) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0090 SWALL:AAO75197 (EMBL:AE016926) (341 aa) fasta scores: E(): 4.7e-124, 96.77% id in 341 aa, and to Bacteroides thetaiotaomicron TraJ SWALL:Q9F6T9 (EMBL:AF289050) (334 aa) fasta scores: E(): 6.3e-95, 74.03% id in 335 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2599 SWALL:AAO77706 (EMBL:AE016936) (337 aa) fasta scores: E(): 8.7e-88, 67.56% id in 336 aa; conserved hypothetical transmembrane protein found in conjugate transposon 1495674 3288298 BF9343_1176 Bacteroides fragilis NCTC 9343 conserved hypothetical transmembrane protein found in conjugate transposon YP_210902.1 1494649 R 272559 CDS YP_210903.1 60680759 3288862 complement(1495693..1496322) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0091 SWALL:AAO75198 (EMBL:AE016926) (209 aa) fasta scores: E(): 3.5e-67, 96.65% id in 209 aa, and to Bacteroides thetaiotaomicron TraI SWALL:Q9F6U0 (EMBL:AF289050) (209 aa) fasta scores: E(): 1.3e-48, 66.02% id in 209 aa; conserved hypothetical protein found on conjugate transposon 1496322 3288862 BF9343_1177 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found on conjugate transposon YP_210903.1 1495693 R 272559 CDS YP_210904.1 60680760 3288103 complement(1496327..1496683) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0092 SWALL:AAO75199 (EMBL:AE016926) (118 aa) fasta scores: E(): 6e-46, 95.76% id in 118 aa, and to Bacteroides thetaiotaomicron TraH SWALL:Q9F6U1 (EMBL:AF289050) (191 aa) fasta scores: E(): 1.7e-09, 37.03% id in 108 aa; conserved hypothetical protein found on conjugate transposon 1496683 3288103 BF9343_1178 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found on conjugate transposon YP_210904.1 1496327 R 272559 CDS YP_210905.1 60680761 3285200 complement(1496712..1499216) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0093 SWALL:AAO75200 (EMBL:AE016926) (834 aa) fasta scores: E(): 0, 97.84% id in 834 aa, and to Bacteroides thetaiotaomicron TraG SWALL:Q9F6U2 (EMBL:AF289050) (838 aa) fasta scores: E(): 0, 73.65% id in 835 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT4770 SWALL:AAO79875 (EMBL:AE016946) (772 aa) fasta scores: E(): 0, 74.74% id in 772 aa; conserved hypothetical protein found on conjugate transposon 1499216 3285200 BF9343_1179 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found on conjugate transposon YP_210905.1 1496712 R 272559 CDS YP_210906.1 60680762 3287127 complement(1499213..1499545) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0094 SWALL:AAO75201 (EMBL:AE016926) (108 aa) fasta scores: E(): 6.1e-41, 95.45% id in 110 aa, and to Bacteroides thetaiotaomicron TraF SWALL:Q9F6U3 (EMBL:AF289050) (110 aa) fasta scores: E(): 1.7e-30, 67.29% id in 107 aa; conserved hypothetical transmembrane protein found on conjugate transposon 1499545 3287127 BF9343_1180 Bacteroides fragilis NCTC 9343 conserved hypothetical transmembrane protein found on conjugate transposon YP_210906.1 1499213 R 272559 CDS YP_210907.1 60680763 3285972 complement(1499557..1499853) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0095 SWALL:Q8ABL5 (EMBL:AE016926) (98 aa) fasta scores: E(): 1e-31, 95.91% id in 98 aa, and to Bacteroides thetaiotaomicron TraE SWALL:Q9F6U4 (EMBL:AF289050) (105 aa) fasta scores: E(): 3.9e-28, 85.71% id in 98 aa; conserved hypothetical transmembrane protein found in conjugate transposon 1499853 3285972 BF9343_1181 Bacteroides fragilis NCTC 9343 conserved hypothetical transmembrane protein found in conjugate transposon YP_210907.1 1499557 R 272559 CDS YP_210908.1 60680764 3287737 complement(1500018..1500731) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0096 SWALL:AAO75203 (EMBL:AE016926) (226 aa) fasta scores: E(): 6.1e-42, 85.23% id in 237 aa; hypothetical protein 1500731 3287737 BF9343_1182 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210908.1 1500018 R 272559 CDS YP_210909.1 60680765 3287626 complement(1500733..1501176) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0097 SWALL:AAO75204 (EMBL:AE016926) (145 aa) fasta scores: E(): 9.7e-43, 85.9% id in 149 aa, and to Bacteroides thetaiotaomicron TraB traB SWALL:Q9F6U7 (EMBL:AF289050) (149 aa) fasta scores: E(): 9.6e-06, 26.81% id in 138 aa; conserved hypothetical protein found in conjugate transposon 1501176 3287626 BF9343_1183 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_210909.1 1500733 R 272559 CDS YP_210910.1 60680766 3287251 complement(1501181..1501942) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0098 SWALL:AAO75205 (EMBL:AE016926) (253 aa) fasta scores: E(): 3.7e-93, 96.44% id in 253 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2303 SWALL:AAO77410 (EMBL:AE016935) (252 aa) fasta scores: E(): 5.4e-57, 58.73% id in 252 aa, and to Bacteroides thetaiotaomicron TraA SWALL:Q9F6U8 (EMBL:AF289050) (251 aa) fasta scores: E(): 1.8e-53, 56.4% id in 250 aa; conserved hypothetical protein found in conjugate transposon 1501942 3287251 BF9343_1184 Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_210910.1 1501181 R 272559 CDS YP_210911.1 60680767 3287486 complement(1501939..1502385) 1 NC_003228.3 no significant database matches; hypothetical protein 1502385 3287486 BF9343_1185 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210911.1 1501939 R 272559 CDS YP_210912.1 60680768 3288054 1502674..1503111 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0100 SWALL:AAO75207 (EMBL:AE016926) (145 aa) fasta scores: E(): 7.4e-55, 100% id in 145 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2612 SWALL:AAO77719 (EMBL:AE016936) (140 aa) fasta scores: E(): 2.5e-22, 49.61% id in 131 aa; hypothetical protein 1503111 3288054 BF9343_1186 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210912.1 1502674 D 272559 CDS YP_210913.1 60680769 3288324 1503096..1504334 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0101 SWALL:AAO75208 (EMBL:AE016926) (412 aa) fasta scores: E(): 3.5e-145, 95.38% id in 412 aa, and to Bacteroides thetaiotaomicron hypothetical 46.7 kDa protein SWALL:Q9F6U9 (EMBL:AF289050) (415 aa) fasta scores: E(): 8.4e-71, 49.03% id in 416 aa, and to Bacteroides thetaiotaomicron putative mobilization protein BT2305 SWALL:AAO77412 (EMBL:AE016935) (408 aa) fasta scores: E(): 1.5e-67, 49.15% id in 415 aa; putative mobilisation protein 1504334 3288324 BF9343_1187 Bacteroides fragilis NCTC 9343 putative mobilisation protein YP_210913.1 1503096 D 272559 CDS YP_210914.1 60680770 3288647 1504355..1506355 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0102 SWALL:AAO75209 (EMBL:AE016926) (669 aa) fasta scores: E(): 0, 94.46% id in 668 aa, and to Bacteroides thetaiotaomicron putative mobilization protein BT2306 SWALL:AAO77413 (EMBL:AE016935) (669 aa) fasta scores: E(): 8e-204, 76.42% id in 666 aa, and to Bacteroides thetaiotaomicron putative mobilization protein BT2614 SWALL:AAO77721 (EMBL:AE016936) (681 aa) fasta scores: E(): 2.5e-193, 73.82% id in 661 aa; putative transmembrane mobilisation protein 1506355 3288647 BF9343_1188 Bacteroides fragilis NCTC 9343 putative transmembrane mobilisation protein YP_210914.1 1504355 D 272559 CDS YP_210915.1 60680771 3288916 complement(1506359..1507033) 1 NC_003228.3 no significant database matches; hypothetical protein 1507033 3288916 BF9343_1189 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210915.1 1506359 R 272559 CDS YP_210916.1 60680772 3288958 complement(1507033..1510083) 1 NC_003228.3 Similar to Thermoplasma acidophilum type IV site-specific deoxyribonuclease eco57i related protein ta1336 SWALL:Q9HIK3 (EMBL:AL445067) (496 aa) fasta scores: E(): 5e-10, 27.99% id in 443 aa; hypothetical protein 1510083 3288958 BF9343_1190 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210916.1 1507033 R 272559 CDS YP_210917.1 60680773 3288962 1510329..1511858 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0103 SWALL:AAO75210 (EMBL:AE016926) (511 aa) fasta scores: E(): 1.9e-158, 93.34% id in 511 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2642 SWALL:AAO77749 (EMBL:AE016936) (601 aa) fasta scores: E(): 6e-35, 32.62% id in 518 aa; hypothetical protein 1511858 3288962 BF9343_1191 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210917.1 1510329 D 272559 CDS YP_210918.1 60680774 3285176 1512040..1514121 1 NC_003228.3 Similar to Bacteroides sp transposon excision protein ExC protein SWALL:Q937U3 (EMBL:AJ319661) (695 aa) fasta scores: E(): 4.7e-151, 58.35% id in 694 aa, and to Bacteroides thetaiotaomicron DNA topoisomerase I BT0105 SWALL:AAO75212 (EMBL:AE016926) (693 aa) fasta scores: E(): 0, 95.38% id in 693 aa, and to Bacteroides thetaiotaomicron DNA topoisomerase III BT2324 SWALL:AAO77431 (EMBL:AE016935) (699 aa) fasta scores: E(): 1.7e-166, 62.24% id in 694 aa; putative transposon excision protein 1514121 exc 3285176 exc Bacteroides fragilis NCTC 9343 putative transposon excision protein YP_210918.1 1512040 D 272559 CDS YP_210919.1 60680775 3285289 complement(1514225..1514671) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0106 SWALL:Q8ABK4 (EMBL:AE016926) (148 aa) fasta scores: E(): 6.8e-51, 85.81% id in 148 aa, and to Methanosarcina acetivorans hypothetical protein Ma4540 SWALL:Q8THH7 (EMBL:AE011174) (198 aa) fasta scores: E(): 2.1e-09, 29.78% id in 141 aa, and to Lactococcus lactis hypothetical protein YudH or ll1960 SWALL:Q9CE85 (EMBL:AE006426) (173 aa) fasta scores: E(): 1e-08, 31.61% id in 136 aa; hypothetical protein 1514671 3285289 BF9343_1193 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210919.1 1514225 R 272559 CDS YP_210920.1 60680776 3285856 complement(1514764..1515072) 1 NC_003228.3 no significant database matches; hypothetical protein 1515072 3285856 BF9343_1194 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210920.1 1514764 R 272559 CDS YP_210921.1 60680777 3287129 complement(1515317..1515595) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0107 SWALL:AAO75214 (EMBL:AE016926) (92 aa) fasta scores: E(): 1.8e-36, 97.82% id in 92 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2332 SWALL:AAO77439 (EMBL:AE016935) (117 aa) fasta scores: E(): 1.6e-12, 43.15% id in 95 aa, and to previously sequenced Bacteroides fragilis hypothetical 14.3 kDa protein SWALL:Q8RM73 (EMBL:AY053505) (119 aa) fasta scores: E(): 6.9e-12, 43.47% id in 92 aa; hypothetical protein 1515595 3287129 BF9343_1195 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210921.1 1515317 R 272559 CDS YP_210922.1 60680778 3286253 complement(1515608..1517659) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0108 SWALL:AAO75215 (EMBL:AE016926) (666 aa) fasta scores: E(): 0, 85.95% id in 655 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2333 SWALL:AAO77440 (EMBL:AE016935) (681 aa) fasta scores: E(): 1.7e-179, 63.14% id in 681 aa, and to previously sequenced Bacteroides fragilis hypothetical 41.4 kDa protein SWALL:Q9KHQ3 (EMBL:AF251288) (359 aa) fasta scores: E(): 1.1e-12, 27.35% id in 351 aa. This CDS overlaps 35 nt at the N-terminus with the upstream CDS.; hypothetical protein 1517659 3286253 BF9343_1196 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210922.1 1515608 R 272559 CDS YP_210923.1 60680779 3288846 complement(1517622..1517981) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0109 SWALL:AAO75216 (EMBL:AE016926) (119 aa) fasta scores: E(): 1.1e-32, 78.15% id in 119 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2334 SWALL:AAO77441 (EMBL:AE016935) (114 aa) fasta scores: E(): 3e-10, 42.37% id in 118 aa. This CDS overlaps 35 nt at the C-terminus with the downstream CDS.; hypothetical protein 1517981 3288846 BF9343_1197 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210923.1 1517622 R 272559 CDS YP_210924.1 60680780 3288331 complement(1518050..1518154) 1 NC_003228.3 no significant database matches; hypothetical protein 1518154 3288331 BF9343_1198 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210924.1 1518050 R 272559 CDS YP_210925.1 60680781 3289114 1518371..1519726 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron multi-drug transporter BexA SWALL:Q93HR0 (EMBL:AB067769) (443 aa) fasta scores: E(): 9.6e-73, 45.66% id in 438 aa, and to Bacteroides thetaiotaomicron BexA, multidrug efflux pump BT0588 SWALL:AAO75695 (EMBL:AE016928) (443 aa) fasta scores: E(): 3.6e-73, 45.89% id in 438 aa, and to Bacteroides thetaiotaomicron BexA, putative cation effux pump BT1900 SWALL:AAO77007 (EMBL:AE016933) (440 aa) fasta scores: E(): 1.9e-61, 40.6% id in 431 aa; putative transmembrane MatE family multidrug efflux transporter 1519726 bexA 3289114 bexA Bacteroides fragilis NCTC 9343 putative transmembrane MatE family multidrug efflux transporter YP_210925.1 1518371 D 272559 CDS YP_210926.1 60680782 3286082 1519756..1520568 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT1430 SWALL:Q8A7U4 (EMBL:AE016931) (272 aa) fasta scores: E(): 1.1e-46, 44.85% id in 272 aa, and to Bacteroides thetaiotaomicron transcriptional regulator, AraC family BT2356 SWALL:Q8A586 (EMBL:AE016935) (239 aa) fasta scores: E(): 1.9e-38, 46.47% id in 241 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT1906 SWALL:Q8A6H8 (EMBL:AE016933) (185 aa) fasta scores: E(): 2.9e-10, 30.68% id in 176 aa; putative transcriptional regulator, AraC family 1520568 3286082 BF9343_1200 Bacteroides fragilis NCTC 9343 putative transcriptional regulator, AraC family YP_210926.1 1519756 D 272559 CDS YP_210927.1 60680783 3285873 complement(1520607..1521455) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative regulatory protein BT0110 SWALL:AAO75217 (EMBL:AE016926) (286 aa) fasta scores: E(): 9.6e-47, 49.24% id in 264 aa, and to Bacteroides thetaiotaomicron tetracycline resistance element mobilization regulatory protein rtec BT1427 SWALL:AAO76534 (EMBL:AE016931) (279 aa) fasta scores: E(): 8.7e-21, 31.22% id in 269 aa; hypothetical protein 1521455 3285873 BF9343_1201 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210927.1 1520607 R 272559 CDS YP_210928.1 60680784 3287413 complement(1521514..1522119) 1 NC_003228.3 C-terminus is similar to Methanosarcina mazei hypothetical protein Mm3348 SWALL:Q8PRU5 (EMBL:AE013595) (59 aa) fasta scores: E(): 1.2e-09, 53.44% id in 58 aa, and entire protein is similar to Methanosarcina mazei hypothetical protein Mm3349 SWALL:Q8PRU4 (EMBL:AE013596) (65 aa) fasta scores: E(): 6.7e-09, 59.32% id in 59 aa; hypothetical protein 1522119 3287413 BF9343_1202 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210928.1 1521514 R 272559 CDS YP_210929.1 60680785 3287217 complement(1522116..1523264) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4142 SWALL:AAO79247 (EMBL:AE016943) (375 aa) fasta scores: E(): 6.8e-86, 55.93% id in 379 aa, and to N-terminus of Bacteroides thetaiotaomicron transcriptional regulator BT1187 SWALL:AAO76294 (EMBL:AE016930) (185 aa) fasta scores: E(): 1.7e-31, 50.57% id in 174 aa; possible AraC family transcriptional regulator 1523264 3287217 BF9343_1203 Bacteroides fragilis NCTC 9343 possible AraC family transcriptional regulator YP_210929.1 1522116 R 272559 CDS YP_210930.1 60680786 3287510 complement(1523383..1523787) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative general stress protein BT1429 SWALL:Q8A7U5 (EMBL:AE016931) (138 aa) fasta scores: E(): 1.2e-18, 37.79% id in 127 aa, and to Clostridium acetobutylicum protein, related to general stress protein 26 CAC3491 SWALL:Q97DI6 (EMBL:AE007846) (145 aa) fasta scores: E(): 3.9e-11, 34.82% id in 112 aa; hypothetical protein 1523787 3287510 BF9343_1204 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210930.1 1523383 R 272559 CDS YP_210931.1 60680787 3288038 complement(1524103..1524750) 1 NC_003228.3 Similar to Erwinia chrysanthemi indigoidine systhesis protein IdgB SWALL:Q9KHB5 (EMBL:AF265211) (230 aa) fasta scores: E(): 2.2e-05, 24.88% id in 213 aa, and to Lactobacillus plantarum phosphoglycolate phosphatase Gph2 or LP_1932 SWALL:CAD64320 (EMBL:AL935257) (222 aa) fasta scores: E(): 1.3e-23, 38.86% id in 211 aa, and to Oceanobacillus iheyensis phosphoglycolate phosphatase ob1713 SWALL:Q8EQI6 (EMBL:AP004598) (212 aa) fasta scores: E(): 8.5e-19, 34.12% id in 211 aa; putative haloacid dehalogenase-like hydrolase 1524750 3288038 BF9343_1205 Bacteroides fragilis NCTC 9343 putative haloacid dehalogenase-like hydrolase YP_210931.1 1524103 R 272559 CDS YP_210932.1 60680788 3288697 complement(1524753..1525352) 1 NC_003228.3 Similar to Bacillus subtilis probable maltose O-acetyltransferase MaA or BSU40850 SWALL:MAA_BACSU (SWALL:P37515) (184 aa) fasta scores: E(): 3.6e-12, 40.51% id in 195 aa, and to Lactobacillus plantarum galactoside O-acetyltransferase Thga2 or LP_1933 SWALL:CAD64321 (EMBL:AL935257) (202 aa) fasta scores: E(): 3.8e-50, 68.36% id in 196 aa, and to Bifidobacterium longum probable sugar O-acetyltransferase bl1719 SWALL:Q8CZF3 (EMBL:AE014805) (225 aa) fasta scores: E(): 1.1e-22, 38.34% id in 193 aa; putative sugar O-acetyltransferase 1525352 3288697 BF9343_1206 Bacteroides fragilis NCTC 9343 putative sugar O-acetyltransferase YP_210932.1 1524753 R 272559 CDS YP_210933.1 60680789 3288521 1525479..1526321 1 NC_003228.3 Similar to Listeria monocytogenes XylS/AraC family transcriptional regulatory protein homolog LapB or LMO2164 SWALL:O52494 (EMBL:AF039207) (292 aa) fasta scores: E(): 2.1e-08, 22.06% id in 281 aa, and to Clostridium acetobutylicum AraC-type DNA-binding domain-containing protein CAC1451 SWALL:Q97J35 (EMBL:AE007656) (295 aa) fasta scores: E(): 6.4e-12, 24.01% id in 279 aa, and to Lactobacillus plantarum transcription regulator LP_3476 SWALL:CAD65562 (EMBL:AL935262) (328 aa) fasta scores: E(): 7e-12, 22.75% id in 290 aa; putative AraC-family transcriptional regulatory protein 1526321 3288521 BF9343_1207 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulatory protein YP_210933.1 1525479 D 272559 CDS YP_210934.1 60680790 3289335 1526777..1526977 1 NC_003228.3 no significant database matches; hypothetical protein 1526977 3289335 BF9343_1208 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210934.1 1526777 D 272559 CDS YP_210935.1 60680791 3288523 1526958..1527119 1 NC_003228.3 no significant database matches; hypothetical protein 1527119 3288523 BF9343_1209 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210935.1 1526958 D 272559 CDS YP_210936.1 60680792 3289421 1527157..1528215 1 NC_003228.3 no significant database matches; hypothetical protein 1528215 3289421 BF9343_1210 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210936.1 1527157 D 272559 CDS YP_210937.1 60680793 3289427 complement(1528557..1529471) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3290 SWALL:AAO78396 (EMBL:AE016939) (288 aa) fasta scores: E(): 8.6e-38, 41.29% id in 293 aa, and to Bacteroides thetaiotaomicron putative integral membrane protein BT2248 SWALL:AAO77355 (EMBL:AE016935) (284 aa) fasta scores: E(): 3.8e-29, 34.64% id in 280 aa, and to Clostridium perfringens hypothetical protein CPE0758 SWALL:Q8XMD1 (EMBL:AP003188) (308 aa) fasta scores: E(): 7.7e-22, 33.01% id in 309 aa; putative transmembrane protein 1529471 3289427 BF9343_1211 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210937.1 1528557 R 272559 CDS YP_210938.1 60680794 3289368 complement(1529541..1530110) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative regulatory protein with a cAMP-binding domain BT1545 SWALL:AAO76652 (EMBL:AE016932) (187 aa) fasta scores: E(): 4.1e-18, 31.55% id in 187 aa, and to Bacteroides thetaiotaomicron putative cAMP-binding domain, regulatory protein BT2102 SWALL:AAO77209 (EMBL:AE016934) (187 aa) fasta scores: E(): 2.7e-14, 32.27% id in 189 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2366 SWALL:AAO77473 (EMBL:AE016935) (187 aa) fasta scores: E(): 9.5e-12, 29.03% id in 186 aa; putative cNMP and DNA binding protein, possible regulator 1530110 3289368 BF9343_1212 Bacteroides fragilis NCTC 9343 putative cNMP and DNA binding protein, possible regulator YP_210938.1 1529541 R 272559 CDS YP_210939.1 60680795 3289432 1530393..1531433 1 NC_003228.3 Similar to Escherichia coli starvation sensing protein RspB or B1580 SWALL:RSPB_ECOLI (SWALL:P38105) (339 aa) fasta scores: E(): 1.1e-20, 27.67% id in 336 aa, and to Bacteroides thetaiotaomicron putative zinc-type alcohol dehydrogenase BT4512 SWALL:AAO79617 (EMBL:AE016945) (350 aa) fasta scores: E(): 9.8e-123, 86.55% id in 342 aa, and to Streptomyces coelicolor putative zinc-containing dehydrogenase sco0179 or scj1.28C SWALL:Q9RIY6 (EMBL:AL939104) (356 aa) fasta scores: E(): 5.1e-44, 37.64% id in 348 aa; putative zinc-binding alcohol dehydrogenase 1531433 3289432 BF9343_1213 Bacteroides fragilis NCTC 9343 putative zinc-binding alcohol dehydrogenase YP_210939.1 1530393 D 272559 CDS YP_210940.1 60680796 3289393 1531513..1532325 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative rRNA methylase BT4513 SWALL:AAO79618 (EMBL:AE016945) (266 aa) fasta scores: E(): 1e-88, 84.15% id in 265 aa, and to Streptomyces coelicolor putative rRNA methylase SCO1552 or SCL11.08c SWALL:Q9L1D0 (EMBL:AL939109) (272 aa) fasta scores: E(): 7.9e-31, 40.44% id in 267 aa, and to Bifidobacterium longum possible tRNA/rRNA methyltransferase TnsR or BL0865 SWALL:Q8G5Y6 (EMBL:AE014708) (292 aa) fasta scores: E(): 4.3e-30, 50% id in 292 aa; putative SpoU-like rRNA methylase 1532325 3289393 BF9343_1214 Bacteroides fragilis NCTC 9343 putative SpoU-like rRNA methylase YP_210940.1 1531513 D 272559 CDS YP_210941.1 60680797 3289369 1532501..1532824 1 NC_003228.3 Similar to Bacillus subtilis thioredoxin TrxA or Trx or BSU28500 SWALL:THIO_BACSU (SWALL:P14949) (103 aa) fasta scores: E(): 1e-06, 35.8% id in 81 aa, and to Bacteroides thetaiotaomicron thioredoxin-like protein, putative thioredoxin BT1914 SWALL:AAO77021 (EMBL:AE016933) (107 aa) fasta scores: E(): 1.4e-31, 77.56% id in 107 aa, and to Bacteroides thetaiotaomicron thioredoxin C-2 BT0219 SWALL:AAO75326 (EMBL:AE016926) (99 aa) fasta scores: E(): 4.4e-11, 43.9% id in 82 aa; putative thioredoxin 1532824 3289369 BF9343_1215 Bacteroides fragilis NCTC 9343 putative thioredoxin YP_210941.1 1532501 D 272559 CDS YP_210942.1 60680798 3289413 complement(1532942..1534471) 1 NC_003228.3 Similar to Homo sapiens arylsulfatase F precursor ArsF SWALL:ARSF_HUMAN (SWALL:P54793) (591 aa) fasta scores: E(): 1.1e-11, 27.25% id in 576 aa, and to Bacteroides thetaiotaomicron N-acetylgalactosamine-6-sulfatase precursor BT3057 SWALL:Q8A397 (EMBL:AE016938) (508 aa) fasta scores: E(): 4.3e-141, 70.34% id in 499 aa, and to Bacteroides thetaiotaomicron putative secreted sulfatase YdeN precursor BT3796 SWALL:Q8A171 (EMBL:AE016942) (518 aa) fasta scores: E(): 7.7e-44, 41.96% id in 498 aa; putative sulfatase protein 1534471 3289413 BF9343_1216 Bacteroides fragilis NCTC 9343 putative sulfatase protein YP_210942.1 1532942 R 272559 CDS YP_210943.1 60680799 3289328 1534709..1537087 1 NC_003228.3 Similar to the C-terminus of Bacteroides thetaiotaomicron two-component system histidine kinase BT0994 SWALL:AAO76101 (EMBL:AE016930) (499 aa) fasta scores: E(): 4.5e-39, 33.87% id in 490 aa, and to entire Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1531 SWALL:AAO76638 (EMBL:AE016932) (869 aa) fasta scores: E(): 5.8e-35, 25.91% id in 849 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT0998 SWALL:AAO76105 (EMBL:AE016930) (810 aa) fasta scores: E(): 1.1e-34, 29.59% id in 615 aa; putative two-component sensor histidine kinase 1537087 3289328 BF9343_1217 Bacteroides fragilis NCTC 9343 putative two-component sensor histidine kinase YP_210943.1 1534709 D 272559 CDS YP_210944.1 60680800 3289422 1537276..1538286 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with a conserved domain BT1919 SWALL:Q8A6G5 (EMBL:AE016933) (336 aa) fasta scores: E(): 1.9e-103, 77.67% id in 336 aa, and to Bordetella pertussis putative integral membrane protein bp2808 SWALL:CAE43081 (EMBL:BX640419) (348 aa) fasta scores: E(): 6.6e-60, 47.57% id in 330 aa, and to Bordetella parapertussis putative integral membrane protein bpp3732 SWALL:CAE39015 (EMBL:BX640434) (348 aa) fasta scores: E(): 6.6e-60, 47.57% id in 330 aa; putative transmembrane protein 1538286 3289422 BF9343_1218 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210944.1 1537276 D 272559 CDS YP_210945.1 60680801 3289364 1538405..1540351 1 NC_003228.3 Similar to Oscillatoria brevis P type ATPase Bxa1 SWALL:Q8L158 (EMBL:AB073990) (660 aa) fasta scores: E(): 2.4e-100, 48.81% id in 633 aa, and to Bacteroides thetaiotaomicron cation-transporting ATPase, P-type, putative zinc-transporting ATPase BT2512 SWALL:AAO77619 (EMBL:AE016936) (652 aa) fasta scores: E(): 3.7e-174, 72.3% id in 650 aa, and to Thermoanaerobacter tengcongensis cation transport ATPases Znta2 or TTE2467 SWALL:Q8R7E7 (EMBL:AE013188) (658 aa) fasta scores: E(): 7.9e-101, 46.56% id in 640 aa; putative transmembrane cation transport P type ATPase 1540351 3289364 BF9343_1219 Bacteroides fragilis NCTC 9343 putative transmembrane cation transport P type ATPase YP_210945.1 1538405 D 272559 CDS YP_210946.1 60680802 3289390 1540354..1540785 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transcription regulator BT2511 SWALL:AAO77618 (EMBL:AE016936) (139 aa) fasta scores: E(): 1.4e-37, 68.88% id in 135 aa, and to Ralstonia solanacearum putative transcription regulator protein RSC0048 or RS01871 SWALL:Q8Y3D2 (EMBL:AL646057) (172 aa) fasta scores: E(): 9.2e-09, 29.54% id in 132 aa, and to Clostridium perfringens probable ferric uptake transcriptional regulator FurR or CPE1462 SWALL:Q8XKD8 (EMBL:AP003190) (136 aa) fasta scores: E(): 1.6e-06, 26.76% id in 142 aa; hypothetical protein 1540785 3289390 BF9343_1220 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210946.1 1540354 D 272559 CDS YP_210947.1 60680803 3289434 complement(1540845..1541981) 1 NC_003228.3 Similar to Porphyromonas gingivalis outer membrane protein 40 precursor SWALL:OM40_PORGI (SWALL:Q9S3R8) (380 aa) fasta scores: E(): 7.7e-29, 32.64% id in 389 aa, and to Bacteroides thetaiotaomicron outer membrane porin F precursor BT0418 SWALL:Q8AAP6 (EMBL:AE016927) (372 aa) fasta scores: E(): 1.1e-14, 31.67% id in 382 aa, and to Bacteroides thetaiotaomicron major outer membrane protein OmpA BT1501 SWALL:Q8A7M3 (EMBL:AE016932) (363 aa) fasta scores: E(): 2.9e-14, 27.46% id in 386 aa; putative outer membrane protein 1541981 3289434 BF9343_1221 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210947.1 1540845 R 272559 CDS YP_210948.1 60680804 3289353 complement(1542068..1542229) 1 NC_003228.3 no significant database matches; hypothetical protein 1542229 3289353 BF9343_1222 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210948.1 1542068 R 272559 CDS YP_210949.1 60680805 3289367 1542495..1542857 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4698 SWALL:AAO79803 (EMBL:AE016946) (120 aa) fasta scores: E(): 1e-32, 65.83% id in 120 aa, and to Brucella melitensis putative uroporphyrin-III c-methyltransferase Bmeii0787 SWALL:Q8YBU9 (EMBL:AE009713) (116 aa) fasta scores: E(): 1.6e-19, 46.55% id in 116 aa, and to Brucella suis conserved hypothetical protein BRA0478 SWALL:Q8FWH7 (EMBL:AE014545) (116 aa) fasta scores: E(): 1.6e-19, 46.55% id in 116 aa; hypothetical protein 1542857 3289367 BF9343_1223 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210949.1 1542495 D 272559 CDS YP_210950.1 60680806 3289346 1542941..1544347 1 NC_003228.3 Similar to Bacillus subtilis amidophosphoribosyltransferase precursor PurF or BSU06490 SWALL:PUR1_BACSU (SWALL:P00497) (476 aa) fasta scores: E(): 1.2e-29, 29.49% id in 478 aa, and to Bacteroides thetaiotaomicron amidophosphoribosyltransferase precursor BT4582 SWALL:AAO79687 (EMBL:AE016945) (469 aa) fasta scores: E(): 8.4e-169, 84.43% id in 469 aa, and to Listeria monocytogenes glutamine phosphoribosylpyrophosphate amidotransferase PurF or LMO1768 SWALL:Q8Y6C2 (EMBL:AL591981) (475 aa) fasta scores: E(): 8.4e-35, 33.66% id in 407 aa; putative amidophosphoribosyltransferase precursor 1544347 purF 3289346 purF Bacteroides fragilis NCTC 9343 putative amidophosphoribosyltransferase precursor YP_210950.1 1542941 D 272559 CDS YP_210951.1 60680807 3289194 1544480..1545703 1 NC_003228.3 Similar to Bacillus subtilis peptidase T PepT or BSU38920 SWALL:PEPT_BACSU (SWALL:P55179) (410 aa) fasta scores: E(): 6.2e-96, 58.75% id in 400 aa, and to Bacteroides thetaiotaomicron peptidase T BT4583 SWALL:AAO79688 (EMBL:AE016945) (407 aa) fasta scores: E(): 1e-144, 89.92% id in 407 aa, and to Clostridium acetobutylicum peptidase T PepT or CAC0476 SWALL:PEPT_CLOAB (SWALL:Q97LS8) (408 aa) fasta scores: E(): 7.3e-99, 60% id in 405 aa; putative peptidase t 1545703 pepT 3289194 pepT Bacteroides fragilis NCTC 9343 putative peptidase t YP_210951.1 1544480 D 272559 CDS YP_210952.1 60680808 3286680 1545737..1546822 1 NC_003228.3 Similar to Escherichia coli aminomethyltransferase GcvT or B2905 SWALL:GCST_ECOLI (SWALL:P27248) (363 aa) fasta scores: E(): 6.4e-41, 38.08% id in 365 aa, and to Bacteroides thetaiotaomicron probable aminomethyltransferase GcvT or BT4584 SWALL:AAO79689 (EMBL:AE016945) (361 aa) fasta scores: E(): 4.7e-133, 90.02% id in 361 aa, and to Thermoanaerobacter tengcongensis probable aminomethyltransferase GcvT or TTE0296 SWALL:GCST_THETN (SWALL:Q8RCV9) (374 aa) fasta scores: E(): 5.4e-64, 48.48% id in 363 aa; putative aminomethyltransferase 1546822 gcvT 3286680 gcvT Bacteroides fragilis NCTC 9343 putative aminomethyltransferase YP_210952.1 1545737 D 272559 CDS YP_210953.1 60680809 3289402 1547829..1549568 1 NC_003228.3 no significant database matches; putative transmembrane protein 1549568 3289402 BF9343_1227 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210953.1 1547829 D 272559 CDS YP_210954.1 60680810 3289391 1549565..1550293 1 NC_003228.3 no significant database matches; hypothetical protein 1550293 3289391 BF9343_1228 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210954.1 1549565 D 272559 CDS YP_210955.1 60680811 3289385 1550369..1552633 1 NC_003228.3 Similar to Magnetospirillum sp. putative Fe transport MagA protein SWALL:Q50411 (EMBL:D32253) (434 aa) fasta scores: E(): 2.3e-24, 27.31% id in 421 aa, and to Bacteroides thetaiotaomicron putative Na+/H+ antiporter BT4585 SWALL:AAO79690 (EMBL:AE016945) (757 aa) fasta scores: E(): 0, 84.06% id in 753 aa, and to Bacteroides thetaiotaomicron putative sodium/proton antiporter BT1101 SWALL:AAO76208 (EMBL:AE016930) (748 aa) fasta scores: E(): 1.3e-147, 50.33% id in 741 aa; putative Na+/H+ family transporter 1552633 3289385 BF9343_1229 Bacteroides fragilis NCTC 9343 putative Na+/H+ family transporter YP_210955.1 1550369 D 272559 CDS YP_210956.1 60680812 3289361 1552675..1553328 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1732 SWALL:AAO76839 (EMBL:AE016933) (217 aa) fasta scores: E(): 8.8e-77, 91.7% id in 217 aa, and to Bacillus subtilis YcgF protein SWALL:P94381 (EMBL:Z99105) (209 aa) fasta scores: E(): 1.1e-10, 28.09% id in 210 aa, and to Bacillus halodurans hypothetical protein BH2170 SWALL:Q9KAW6 (EMBL:AP001514) (209 aa) fasta scores: E(): 1.9e-08, 28.36% id in 208 aa; putative transmembrane protein 1553328 3289361 BF9343_1230 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210956.1 1552675 D 272559 CDS YP_210957.1 60680813 3289365 1553347..1553892 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1731 SWALL:AAO76838 (EMBL:AE016933) (181 aa) fasta scores: E(): 3.3e-53, 77.22% id in 180 aa; hypothetical protein 1553892 3289365 BF9343_1231 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210957.1 1553347 D 272559 CDS YP_210958.1 60680814 3287822 1554028..1554891 1 NC_003228.3 Similar to Aneurinibacillus thermoaerophilus dTDP-dehydrorhamnose reductase RmlD SWALL:Q93F84 (EMBL:AF324836) (282 aa) fasta scores: E(): 3.9e-40, 42.95% id in 284 aa, and to Bacteroides thetaiotaomicron putative dTDP-4-dehydrorhamnose reductase BT1730 SWALL:AAO76837 (EMBL:AE016933) (282 aa) fasta scores: E(): 1.6e-93, 80.85% id in 282 aa, and to Bacteroides thetaiotaomicron dTDP-4-dehydrorhamnose reductase BT0465 SWALL:AAO75572 (EMBL:AE016927) (284 aa) fasta scores: E(): 2e-57, 54.06% id in 283 aa; putative dTDP-dehydrorhamnose reductase 1554891 rmlD 3287822 rmlD Bacteroides fragilis NCTC 9343 putative dTDP-dehydrorhamnose reductase YP_210958.1 1554028 D 272559 CDS YP_210959.1 60680815 3287738 1554916..1556490 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 peptide chain release factor 3 PrfC or Tos or MiaD or B4375 or C5456 or Z5976 or ECS5333 SWALL:RF3_ECOLI (SWALL:P33998) (528 aa) fasta scores: E(): 4.9e-93, 49.8% id in 520 aa, and to Bacteroides thetaiotaomicron peptide chain release factor 3 BT1729 SWALL:AAO76836 (EMBL:AE016933) (532 aa) fasta scores: E(): 2.5e-186, 94.46% id in 524 aa, and to Chlorobium tepidum peptide chain release factor 3 PrfC or CT0818 SWALL:Q8KE72 (EMBL:AE012849) (531 aa) fasta scores: E(): 1.7e-120, 63.34% id in 521 aa; putative peptide chain release factor 3 1556490 prfC 3287738 prfC Bacteroides fragilis NCTC 9343 putative peptide chain release factor 3 YP_210959.1 1554916 D 272559 CDS YP_210960.1 60680816 3289319 1556732..1556929 1 NC_003228.3 no significant database matches; hypothetical protein 1556929 3289319 BF9343_1234 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210960.1 1556732 D 272559 CDS YP_210961.1 60680817 3289399 1557057..1558289 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative hydrolase, haloacid dehalogenase-like hydrolase BT4699 SWALL:AAO79804 (EMBL:AE016946) (410 aa) fasta scores: E(): 1.4e-124, 82.68% id in 410 aa, and to Bacteroides thetaiotaomicron haloacid dehalogenase-like hydrolase BT3352 SWALL:AAO78458 (EMBL:AE016940) (270 aa) fasta scores: E(): 8.5e-43, 48.49% id in 266 aa, and to Vibrio cholerae hypothetical protein Vc1364 SWALL:Q9KS95 (EMBL:AE004216) (273 aa) fasta scores: E(): 1.2e-24, 35.18% id in 270 aa; putative haloacid dehalogenase-like hydrolase 1558289 3289399 BF9343_1235 Bacteroides fragilis NCTC 9343 putative haloacid dehalogenase-like hydrolase YP_210961.1 1557057 D 272559 CDS YP_210962.1 60680818 3289440 1558286..1559392 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 isochorismate synthase EntC or B0593 or Z0735 or ECS0632 SWALL:ENTC_ECOLI (SWALL:P10377) (391 aa) fasta scores: E(): 7e-17, 29.33% id in 242 aa, and to Bacteroides thetaiotaomicron isochorismate synthase EntC BT4700 SWALL:AAO79805 (EMBL:AE016946) (370 aa) fasta scores: E(): 2.9e-97, 65.65% id in 364 aa, and to Vibrio parahaemolyticus menaquinone-specific isochorismate synthase vp0928 SWALL:BAC59191 (EMBL:AP005076) (435 aa) fasta scores: E(): 1.1e-17, 32.72% id in 275 aa; possible isochorismate synthase 1559392 3289440 BF9343_1236 Bacteroides fragilis NCTC 9343 possible isochorismate synthase YP_210962.1 1558286 D 272559 CDS YP_210963.1 60680819 3289180 1559413..1561080 1 NC_003228.3 Similar to Haemophilus influenzae menaquinone biosynthesis protein MenD or hi0283 SWALL:MEND_HAEIN (SWALL:P44612) (568 aa) fasta scores: E(): 9.9e-32, 29.09% id in 574 aa, and to Bacteroides thetaiotaomicron 2-oxoglutarate decarboxylase and 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase BT4701 SWALL:AAO79806 (EMBL:AE016946) (555 aa) fasta scores: E(): 2.3e-191, 81.76% id in 554 aa, and to Bifidobacterium longum possible decarboxylase with TPP domain bl0231 SWALL:Q8G7M4 (EMBL:AE014641) (581 aa) fasta scores: E(): 1.2e-33, 30.64% id in 571 aa; putative menaquinone biosynthesis protein 1561080 menD 3289180 menD Bacteroides fragilis NCTC 9343 putative menaquinone biosynthesis protein YP_210963.1 1559413 D 272559 CDS YP_210964.1 60680820 3288943 1561085..1562086 1 NC_003228.3 no significant database matches; hypothetical protein 1562086 3288943 BF9343_1238 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210964.1 1561085 D 272559 CDS YP_210965.1 60680821 3289222 1562108..1562932 1 NC_003228.3 Similar to Bacillus subtilis naphthoate synthase MenB or BSU30800 SWALL:MENB_BACSU (SWALL:P23966) (271 aa) fasta scores: E(): 1.1e-74, 67.28% id in 269 aa, and to Bacteroides thetaiotaomicron dihydroxynapthoic acid synthetase BT4702 SWALL:AAO79807 (EMBL:AE016946) (274 aa) fasta scores: E(): 2.2e-101, 94.16% id in 274 aa, and to Staphylococcus aureus naphthoate synthase MenB or sav1045 or sa0898 SWALL:Q99V48 (EMBL:AP003361) (273 aa) fasta scores: E(): 1.5e-74, 66.54% id in 272 aa; putative naphthoate synthase 1562932 menB 3289222 menB Bacteroides fragilis NCTC 9343 putative naphthoate synthase YP_210965.1 1562108 D 272559 CDS YP_210966.1 60680822 3289363 1562981..1564000 1 NC_003228.3 Similar to Acinetobacter lwoffii muconate cycloisomerase I 2 CatB2 SWALL:CTB2_ACILW (SWALL:O33949) (385 aa) fasta scores: E(): 2.9e-06, 27.52% id in 327 aa, and to Bacteroides thetaiotaomicron chloromuconate cycloisomerase BT4703 SWALL:AAO79808 (EMBL:AE016946) (341 aa) fasta scores: E(): 1.5e-117, 80.71% id in 337 aa, and to Agrobacterium tumefaciens chloromuconate cycloisomerase atu5478 or agr_pat_707 SWALL:Q8UJJ9 (EMBL:AE008968) (365 aa) fasta scores: E(): 8e-10, 24.51% id in 306 aa; putative muconate cycloisomerase 1564000 3289363 BF9343_1240 Bacteroides fragilis NCTC 9343 putative muconate cycloisomerase YP_210966.1 1562981 D 272559 CDS YP_210967.1 60680823 3289231 1564014..1565108 1 NC_003228.3 Similar to Salmonella typhimurium O-succinylbenzoate--CoA ligase MenE or STM2305 SWALL:MENE_SALTY (SWALL:P37418) (455 aa) fasta scores: E(): 1.1e-10, 25.78% id in 318 aa, and to Bacteroides thetaiotaomicron O-succinylbenzoic acid--CoA ligase BT4704 SWALL:AAO79809 (EMBL:AE016946) (368 aa) fasta scores: E(): 1.5e-81, 62.74% id in 357 aa, and to Escherichia coli O6 O-succinylbenzoic acid--CoA ligase MenE or C2803 SWALL:Q8FFL5 (EMBL:AE016763) (451 aa) fasta scores: E(): 5.9e-12, 26.49% id in 317 aa; putative O-succinylbenzoate--CoA ligase 1565108 menE 3289231 menE Bacteroides fragilis NCTC 9343 putative O-succinylbenzoate--CoA ligase YP_210967.1 1564014 D 272559 CDS YP_210968.1 60680824 3289396 1565179..1566036 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with endonuclease/exonuclease/phosphatase family domain BT2630 SWALL:AAO77737 (EMBL:AE016936) (316 aa) fasta scores: E(): 3.8e-37, 43.08% id in 253 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3783 SWALL:AAO78888 (EMBL:AE016942) (315 aa) fasta scores: E(): 5.4e-34, 40.23% id in 256 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob0459 SWALL:Q8ET06 (EMBL:AP004594) (402 aa) fasta scores: E(): 2.3e-30, 34.73% id in 262 aa; putative endonuclease/exonuclease/phosphatase family protein 1566036 3289396 BF9343_1242 Bacteroides fragilis NCTC 9343 putative endonuclease/exonuclease/phosphatase family protein YP_210968.1 1565179 D 272559 CDS YP_210969.1 60680825 3289376 1566059..1568074 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron alpha-glucosidase SusB or BT3703 SWALL:AAO78808 (EMBL:U66897) (738 aa) fasta scores: E(): 6.8e-48, 38.88% id in 738 aa, and to Bacteroides thetaiotaomicron alpha-glucosidase BT0683 SWALL:AAO75790 (EMBL:AE016928) (671 aa) fasta scores: E(): 0, 80.18% id in 666 aa, and to Shewanella oneidensis alpha-glucosidase SusB or so2450 SWALL:Q8EED2 (EMBL:AE015686) (699 aa) fasta scores: E(): 4e-93, 45.79% id in 690 aa; putative alpha-glucosidase protein 1568074 3289376 BF9343_1243 Bacteroides fragilis NCTC 9343 putative alpha-glucosidase protein YP_210969.1 1566059 D 272559 CDS YP_210970.1 60680826 3289398 complement(1568051..1568650) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region ECF-type sigma factor RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 9e-07, 25.53% id in 188 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1053 SWALL:Q8A8W4 (EMBL:AE016930) (202 aa) fasta scores: E(): 1.3e-52, 72% id in 200 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4355 SWALL:Q89ZM2 (EMBL:AE016944) (191 aa) fasta scores: E(): 6.6e-27, 42.63% id in 190 aa; putative RNA polymerase ECF-type sigma factor 1568650 3289398 BF9343_1244 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210970.1 1568051 R 272559 CDS YP_210971.1 60680827 3289333 1568804..1569826 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 1.4e-18, 28.67% id in 265 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT1052 SWALL:Q8A8W5 (EMBL:AE016930) (330 aa) fasta scores: E(): 6.8e-62, 51.35% id in 333 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT1876 SWALL:Q8A6K5 (EMBL:AE016933) (337 aa) fasta scores: E(): 2e-24, 31.08% id in 341 aa. Putative alternative start site at codon 5.; putative anti-sigma factor 1569826 3289333 BF9343_1245 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_210971.1 1568804 D 272559 CDS YP_210972.1 60680828 3289387 1570137..1573442 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis outer membrane protein Omp117 SWALL:Q9AF86 (EMBL:AF364409) (1089 aa) fasta scores: E(): 7e-186, 45.9% id in 1100 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1046 SWALL:AAO76153 (EMBL:AE016930) (940 aa) fasta scores: E(): 0, 64.12% id in 931 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1280 SWALL:AAO76387 (EMBL:AE016931) (1110 aa) fasta scores: E(): 4.3e-200, 48.33% id in 1109 aa; putative outer membrane protein 1573442 3289387 BF9343_1246 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_210972.1 1570137 D 272559 CDS YP_210973.1 60680829 3289324 1573455..1574999 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1047 SWALL:AAO76154 (EMBL:AE016930) (514 aa) fasta scores: E(): 1.3e-101, 49.13% id in 519 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1039 SWALL:AAO76146 (EMBL:AE016930) (527 aa) fasta scores: E(): 9.8e-85, 45.75% id in 507 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3752 SWALL:AAO78857 (EMBL:AE016942) (521 aa) fasta scores: E(): 1.1e-77, 43.76% id in 521 aa; hypothetical protein 1574999 3289324 BF9343_1247 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210973.1 1573455 D 272559 CDS YP_210974.1 60680830 3289405 1575027..1576079 1 NC_003228.3 Limited similarity to Flavobacterium meningosepticum endo-beta-N-acetylglucosaminidase F2 precursor EndoF2 SWALL:EBA2_FLAME (SWALL:P36912) (335 aa) fasta scores: E(): 0.0014, 28.74% id in 327 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1044 SWALL:AAO76151 (EMBL:AE016930) (364 aa) fasta scores: E(): 1.3e-35, 38.5% id in 374 aa, and to Bacteroides thetaiotaomicron endo-beta-N-acetylglucosaminidase F2 precursor BT3753 SWALL:AAO78858 (EMBL:AE016942) (367 aa) fasta scores: E(): 1.3e-28, 40.37% id in 369 aa; possible endo-beta-N-acetylglucosaminidase 1576079 3289405 BF9343_1248 Bacteroides fragilis NCTC 9343 possible endo-beta-N-acetylglucosaminidase YP_210974.1 1575027 D 272559 CDS YP_210975.1 60680831 3289423 1576091..1577233 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1037 SWALL:AAO76144 (EMBL:AE016930) (395 aa) fasta scores: E(): 1.7e-26, 37.85% id in 383 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4710 SWALL:AAO79815 (EMBL:AE016946) (402 aa) fasta scores: E(): 9.3e-23, 28.83% id in 378 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3754 SWALL:AAO78859 (EMBL:AE016942) (396 aa) fasta scores: E(): 5.7e-19, 29.5% id in 400 aa; hypothetical protein 1577233 3289423 BF9343_1249 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210975.1 1576091 D 272559 CDS YP_210976.1 60680832 3289375 1577256..1578269 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron sialidase precursor, exo-alpha-sialidase BT2194 SWALL:AAO77301 (EMBL:AE016935) (316 aa) fasta scores: E(): 2e-05, 27.24% id in 323 aa; hypothetical protein 1578269 3289375 BF9343_1250 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210976.1 1577256 D 272559 CDS YP_210977.1 60680833 3289436 1578518..1579786 1 NC_003228.3 Similar to Neisseria gonorrhoeae glutamine synthetase SWALL:P95363 (EMBL:U82701) (427 aa) fasta scores: E(): 3.4e-08, 23.17% id in 410 aa, and to Bacteroides thetaiotaomicron putative signal transducer BT1034 SWALL:AAO76141 (EMBL:AE016930) (443 aa) fasta scores: E(): 2.7e-60, 60.73% id in 433 aa, and to Bacteroides thetaiotaomicron AmpG protein, beta-lactamase induction signal transducer BT3620 SWALL:AAO78725 (EMBL:AE016941) (393 aa) fasta scores: E(): 6.7e-53, 38.22% id in 382 aa; putative transmembrane protein 1579786 3289436 BF9343_1251 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210977.1 1578518 D 272559 CDS YP_210978.1 60680834 3289426 1579841..1580839 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1033 SWALL:AAO76140 (EMBL:AE016930) (322 aa) fasta scores: E(): 4.3e-96, 67.71% id in 319 aa, and to Thermotoga maritima hypothetical protein Tm1225 TM1225 SWALL:Q9X0V2 (EMBL:AE001779) (326 aa) fasta scores: E(): 4.1e-80, 58.84% id in 328 aa, and to Thermoanaerobacter tengcongensis predicted glycosylase TTE2626 SWALL:Q8R704 (EMBL:AE013203) (310 aa) fasta scores: E(): 3.5e-35, 35.04% id in 311 aa; hypothetical protein 1580839 3289426 BF9343_1252 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210978.1 1579841 D 272559 CDS YP_210979.1 60680835 3289384 complement(1580943..1581416) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis non-specific DNA-binding protein Dps SWALL:Q9FDN5 (EMBL:AF206033) (157 aa) fasta scores: E(): 2.5e-57, 100% id in 157 aa, and to Bacteroides thetaiotaomicron non-specific DNA-binding protein Dps BT4715 SWALL:AAO79820 (EMBL:AE016946) (158 aa) fasta scores: E(): 1.6e-40, 72.43% id in 156 aa, and to Porphyromonas gingivalis Dps SWALL:Q9WXJ3 (EMBL:AB025779) (159 aa) fasta scores: E(): 2.3e-24, 48.7% id in 154 aa; putative DNA-binding protein 1581416 3289384 BF9343_1253 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_210979.1 1580943 R 272559 CDS YP_210980.1 60680836 3289155 1581558..1582484 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis redox-sensitive transcriptional activator OxyR SWALL:Q9FDN4 (EMBL:AF206033) (308 aa) fasta scores: E(): 1.1e-115, 100% id in 308 aa, and similar to previously sequenced Bacteroides fragilis redox-sensitive transcriptional activator OxyR SWALL:Q9FDN3 (EMBL:AF206034) (308 aa) fasta scores: E(): 3.9e-115, 99.67% id in 308 aa, and to Bacteroides thetaiotaomicron redox-sensitive transcriptional activator BT4716 SWALL:AAO79821 (EMBL:AE016946) (308 aa) fasta scores: E(): 4.6e-94, 80.84% id in 308 aa; redox-sensitive transcriptional activator 1582484 oxyR 3289155 oxyR Bacteroides fragilis NCTC 9343 redox-sensitive transcriptional activator YP_210980.1 1581558 D 272559 CDS YP_210981.1 60680837 3289350 complement(1582590..1583342) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4719 SWALL:AAO79824 (EMBL:AE016946) (240 aa) fasta scores: E(): 2.8e-23, 39.75% id in 244 aa; hypothetical protein 1583342 3289350 BF9343_1255 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210981.1 1582590 R 272559 CDS YP_210982.1 60680838 3289430 1583531..1584079 1 NC_003228.3 Similar to Pseudomonas aeruginosa RNA polymerase sigma-H factor AlgU or AlgT or pa0762 SWALL:RPSH_PSEAE (SWALL:Q06198) (193 aa) fasta scores: E(): 6.5e-10, 27.71% id in 184 aa, and to Bacteroides thetaiotaomicron putative RNA polymerase ECF-type sigma factor BT4720 SWALL:Q89YL1 (EMBL:AE016946) (182 aa) fasta scores: E(): 2.3e-59, 82.96% id in 182 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1559 SWALL:Q8A7G5 (EMBL:AE016932) (154 aa) fasta scores: E(): 7.8e-24, 51.33% id in 150 aa; putative RNA polymerase ECF-type sigma factor 1584079 3289430 BF9343_1256 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_210982.1 1583531 D 272559 CDS YP_210983.1 60680839 3289418 1584131..1585393 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4721 SWALL:AAO79826 (EMBL:AE016946) (418 aa) fasta scores: E(): 6.3e-78, 56.57% id in 426 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1558 SWALL:AAO76665 (EMBL:AE016932) (350 aa) fasta scores: E(): 1.5e-11, 26.32% id in 433 aa; hypothetical protein 1585393 3289418 BF9343_1257 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210983.1 1584131 D 272559 CDS YP_210984.1 60680840 3286151 complement(1585626..1586351) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri pyruvate formate-lyase 1 activating enzyme PflA or Act or B0902 or C1038 or Z1246 or ECS0985 or SF0897 or S0961 SWALL:PFLA_ECOLI (SWALL:P09374) (245 aa) fasta scores: E(): 3e-38, 45.29% id in 234 aa, and to Bacteroides thetaiotaomicron pyruvate formate-lyase activating enzyme BT4737 SWALL:AAO79842 (EMBL:AE016946) (242 aa) fasta scores: E(): 6.1e-81, 81.74% id in 241 aa, and to Vibrio cholerae pyruvate formate-lyase 1 activating enzyme VC1869 SWALL:Q9KQX8 (EMBL:AE004263) (246 aa) fasta scores: E(): 4.5e-39, 46.86% id in 239 aa; putative pyruvate formate-lyase 1 activating enzyme 1586351 pflA 3286151 pflA Bacteroides fragilis NCTC 9343 putative pyruvate formate-lyase 1 activating enzyme YP_210984.1 1585626 R 272559 CDS YP_210985.1 60680841 3287830 complement(1586356..1588584) 1 NC_003228.3 Similar to Escherichia coli formate acetyltransferase 1 PflB or Pfl or B0903 SWALL:PFLB_ECOLI (SWALL:P09373) (759 aa) fasta scores: E(): 3.2e-165, 57.81% id in 749 aa, and to Bacteroides thetaiotaomicron formate acetyltransferase BT4738 SWALL:AAO79843 (EMBL:AE016946) (742 aa) fasta scores: E(): 0, 92.99% id in 742 aa, and to Clostridium acetobutylicum pyruvate-formate lyase CAC0980 SWALL:Q97KD9 (EMBL:AE007614) (743 aa) fasta scores: E(): 1.6e-183, 62.41% id in 737 aa, and to Synechococcus elongatus formate acetyltransferase tll0990 SWALL:Q8DK76 (EMBL:AP005372) (755 aa) fasta scores: E(): 6.4e-179, 62.29% id in 740 aa, and to Clostridium pasteurianum formate acetyltransferase pfL SWALL:PFL_CLOPA (SWALL:Q46266) (740 aa) fasta scores: E(): 4.1e-178, 61.68% id in 736 aa; putative formate acetyltransferase 1 1588584 pflB 3287830 pflB Bacteroides fragilis NCTC 9343 putative formate acetyltransferase 1 YP_210985.1 1586356 R 272559 CDS YP_210986.1 60680842 3289414 complement(1588608..1588775) 1 NC_003228.3 no significant database matches; hypothetical protein 1588775 3289414 BF9343_1260 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210986.1 1588608 R 272559 CDS YP_210987.1 60680843 3289404 1589490..1589594 1 NC_003228.3 no significant database matches; hypothetical protein 1589594 3289404 BF9343_1261 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210987.1 1589490 D 272559 CDS YP_210988.1 60680844 3289439 1589667..1590176 1 NC_003228.3 no significant database matches; putative transmembrane protein 1590176 3289439 BF9343_1262 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_210988.1 1589667 D 272559 CDS YP_210989.1 60680845 3289344 complement(1590358..1592931) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1247 SWALL:AAO76354 (EMBL:AE016931) (863 aa) fasta scores: E(): 6.1e-199, 57.92% id in 858 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3508 SWALL:AAO78614 (EMBL:AE016940) (851 aa) fasta scores: E(): 4e-72, 33.44% id in 873 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3048 SWALL:AAO78154 (EMBL:AE016938) (895 aa) fasta scores: E(): 1.6e-65, 32.26% id in 908 aa; hypothetical protein 1592931 3289344 BF9343_1263 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210989.1 1590358 R 272559 CDS YP_210990.1 60680846 3289443 1593052..1593189 1 NC_003228.3 no significant database matches; hypothetical protein 1593189 3289443 BF9343_1264 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210990.1 1593052 D 272559 CDS YP_210991.1 60680847 3285227 1593239..1593391 1 NC_003228.3 no significant database matches; hypothetical protein 1593391 3285227 BF9343_1265 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210991.1 1593239 D 272559 CDS YP_210992.1 60680848 3289388 1593497..1593682 1 NC_003228.3 no significant database matches; hypothetical protein 1593682 3289388 BF9343_1266 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210992.1 1593497 D 272559 CDS YP_210993.1 60680849 3289397 1593700..1595355 1 NC_003228.3 Similar to Bacillus thermoamyloliquefaciens alpha-glucosidase II SWALL:AGL2_BACTQ (SWALL:Q9F234) (787 aa) fasta scores: E(): 1.8e-10, 27.14% id in 479 aa, and to Clostridium perfringens hypothetical protein CPE0852 SWALL:Q8XM38 (EMBL:AP003188) (473 aa) fasta scores: E(): 5.7e-90, 47.34% id in 452 aa, and to Drosophila melanogaster Cg11909 protein SWALL:Q9VBR6 (EMBL:AE003751) (657 aa) fasta scores: E(): 8.8e-36, 29.88% id in 415 aa; putative alpha-glucosidase II 1595355 3289397 BF9343_1267 Bacteroides fragilis NCTC 9343 putative alpha-glucosidase II YP_210993.1 1593700 D 272559 CDS YP_210994.1 60680850 3289403 complement(1595441..1595914) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0147 SWALL:AAO75254 (EMBL:AE016926) (153 aa) fasta scores: E(): 3.9e-33, 65.78% id in 152 aa; hypothetical protein 1595914 3289403 BF9343_1268 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210994.1 1595441 R 272559 CDS YP_210995.1 60680851 3289378 complement(1595951..1597240) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative hemolysin BT0148 SWALL:AAO75255 (EMBL:AE016926) (429 aa) fasta scores: E(): 5.1e-136, 86.71% id in 429 aa, and to Synechocystis sp. hypothetical protein SLL0260 SWALL:Y260_SYNY3 (SWALL:P74409) (448 aa) fasta scores: E(): 3e-55, 40.79% id in 429 aa, and to Synechococcus elongatus TLL0985 protein SWALL:Q8DK81 (EMBL:AP005372) (446 aa) fasta scores: E(): 1e-54, 39.62% id in 424 aa; putative transmembrane CorC/HlyC family transporter 1597240 3289378 BF9343_1269 Bacteroides fragilis NCTC 9343 putative transmembrane CorC/HlyC family transporter YP_210995.1 1595951 R 272559 CDS YP_210996.1 60680852 3285907 complement(1597397..1598197) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron peptidase BT0149 SWALL:AAO75256 (EMBL:AE016926) (260 aa) fasta scores: E(): 7e-71, 78.86% id in 265 aa, and to Yersinia pestis putative lipoprotein YPO0927 SWALL:Q8ZHH0 (EMBL:AJ414145) (250 aa) fasta scores: E(): 1.8e-26, 39.48% id in 233 aa, and to Yersinia pestis hypothetical protein Y3311 SWALL:Q8CZV8 (EMBL:AE013932) (259 aa) fasta scores: E(): 1.9e-26, 39.48% id in 233 aa; putative peptidase 1598197 3285907 BF9343_1270 Bacteroides fragilis NCTC 9343 putative peptidase YP_210996.1 1597397 R 272559 CDS YP_210997.1 60680853 3289332 complement(1598239..1600647) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ferric aerobactin receptor BT0150 SWALL:Q8ABG0 (EMBL:AE016926) (792 aa) fasta scores: E(): 0, 79.54% id in 792 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1460 SWALL:Q8A7R4 (EMBL:AE016931) (825 aa) fasta scores: E(): 1.2e-32, 25.45% id in 833 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0964 SWALL:Q8A953 (EMBL:AE016929) (800 aa) fasta scores: E(): 2.4e-31, 25.17% id in 727 aa; putative TonB dependent outer membrane protein 1600647 3289332 BF9343_1271 Bacteroides fragilis NCTC 9343 putative TonB dependent outer membrane protein YP_210997.1 1598239 R 272559 CDS YP_210998.1 60680854 3289400 1600718..1601155 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0151 SWALL:AAO75258 (EMBL:AE016926) (144 aa) fasta scores: E(): 3.3e-36, 64.58% id in 144 aa; hypothetical protein 1601155 3289400 BF9343_1272 Bacteroides fragilis NCTC 9343 hypothetical protein YP_210998.1 1600718 D 272559 CDS YP_210999.1 60680855 3289313 1601187..1602005 1 NC_003228.3 Similar to Pasteurella multocida esterase MesA SWALL:Q9EZ25 (EMBL:AF306495) (269 aa) fasta scores: E(): 3.4e-32, 37.93% id in 261 aa, and to Bacteroides thetaiotaomicron acetyl esterase BT0152 SWALL:AAO75259 (EMBL:AE016926) (272 aa) fasta scores: E(): 2.2e-87, 75.92% id in 270 aa, and to Pasteurella multocida XynC or pm1451 SWALL:Q9CKZ9 (EMBL:AE006181) (269 aa) fasta scores: E(): 9.1e-33, 38.54% id in 262 aa; putative esterase 1602005 3289313 BF9343_1273 Bacteroides fragilis NCTC 9343 putative esterase YP_210999.1 1601187 D 272559 CDS YP_211000.1 60680856 3289374 complement(1602222..1603004) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0153 SWALL:AAO75260 (EMBL:AE016926) (291 aa) fasta scores: E(): 7.5e-12, 37.41% id in 286 aa; hypothetical protein 1603004 3289374 BF9343_1274 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211000.1 1602222 R 272559 CDS YP_211001.1 60680857 3289425 1603003..1603212 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2853 SWALL:AAO77959 (EMBL:AE016937) (62 aa) fasta scores: E(): 5.5, 50% id in 32 aa; hypothetical protein 1603212 3289425 BF9343_1275 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211001.1 1603003 D 272559 CDS YP_211002.1 60680858 3288010 1603216..1604502 1 NC_003228.3 Similar to Leptospira interrogans O-acetylhomoserine sulfhydrylase MetY or La2062 SWALL:Q8F4H9 (EMBL:AE011378) (434 aa) fasta scores: E(): 1.1e-84, 55.24% id in 429 aa, and to Bacteroides thetaiotaomicron O-acetylhomoserine BT2387 SWALL:AAO77494 (EMBL:AE016935) (428 aa) fasta scores: E(): 2.9e-137, 86.44% id in 428 aa, and to Bifidobacterium longum O-acetylhomoserine CysD or Bl0933 SWALL:Q8CY52 (EMBL:AE014715) (438 aa) fasta scores: E(): 1.7e-110, 68.77% id in 426 aa; putative O-acetylhomoserine sulfhydrylase 1604502 metY 3288010 metY Bacteroides fragilis NCTC 9343 putative O-acetylhomoserine sulfhydrylase YP_211002.1 1603216 D 272559 CDS YP_211003.1 60680859 3285232 1604507..1605568 1 NC_003228.3 Similar to Escherichia coli tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU or AsuE or MnmA or B1133 SWALL:TRMU_ECOLI (SWALL:P25745) (368 aa) fasta scores: E(): 5.8e-44, 37.7% id in 358 aa, and to Bacteroides thetaiotaomicron putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase BT0155 SWALL:AAO75262 (EMBL:AE016926) (355 aa) fasta scores: E(): 1.4e-123, 83% id in 353 aa, and to Borrelia burgdorferi probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU or BB0682 SWALL:TRMU_BORBU (SWALL:O51625) (355 aa) fasta scores: E(): 2.3e-57, 44.1% id in 356 aa; putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1605568 trmU 3285232 trmU Bacteroides fragilis NCTC 9343 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_211003.1 1604507 D 272559 CDS YP_211004.1 60680860 3289437 complement(1605693..1606370) 1 NC_003228.3 Similar to Bacillus subtilis transcriptional regulatory protein DegU or Iep or BSU35490 SWALL:DEGU_BACSU (SWALL:P13800) (229 aa) fasta scores: E(): 4.1e-07, 24.33% id in 226 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT0156 SWALL:AAO75263 (EMBL:AE016926) (220 aa) fasta scores: E(): 1.1e-69, 83.55% id in 225 aa, and to Streptomyces coelicolor putative response regulator sco6162 or sc1a9.26C SWALL:Q9ZBS6 (EMBL:AL939126) (260 aa) fasta scores: E(): 1.2e-11, 28.44% id in 218 aa; putative transcriptional regulatory protein 1606370 3289437 BF9343_1278 Bacteroides fragilis NCTC 9343 putative transcriptional regulatory protein YP_211004.1 1605693 R 272559 CDS YP_211005.1 60680861 3285912 complement(1606476..1607066) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0157 SWALL:AAO75264 (EMBL:AE016926) (196 aa) fasta scores: E(): 8.5e-53, 75% id in 196 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1072 SWALL:AAO76179 (EMBL:AE016930) (184 aa) fasta scores: E(): 7.6e-28, 54.71% id in 159 aa; hypothetical protein 1607066 3285912 BF9343_1279 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211005.1 1606476 R 272559 CDS YP_211006.1 60680862 3289411 complement(1607135..1608565) 1 NC_003228.3 Similar to Bacillus subtilis malate-2H(+)/Na(+)-lactate antiporter MleN or BSU23560 SWALL:MLEN_BACSU (SWALL:P54571) (468 aa) fasta scores: E(): 8.3e-36, 34.11% id in 466 aa, and to Bacteroides thetaiotaomicron Na(+)/H(+) antiporter BT0158 SWALL:AAO75265 (EMBL:AE016926) (475 aa) fasta scores: E(): 5.1e-157, 85.05% id in 475 aa, and to Yersinia pseudotuberculosis putative Na+/H+ antiporter ORF2 SWALL:Q93AP6 (EMBL:AF418982) (484 aa) fasta scores: E(): 4.1e-49, 32.09% id in 483 aa; putative transmembrane Na+/H+ antiporter 1608565 3289411 BF9343_1280 Bacteroides fragilis NCTC 9343 putative transmembrane Na+/H+ antiporter YP_211006.1 1607135 R 272559 CDS YP_211007.1 60680863 3289429 complement(1608590..1609471) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0159 SWALL:Q8ABF1 (EMBL:AE016926) (290 aa) fasta scores: E(): 1.9e-84, 85.05% id in 281 aa, and to Chlorobium tepidum hypothetical protein CT0830 SWALL:Q8KE60 (EMBL:AE012850) (291 aa) fasta scores: E(): 4.2e-48, 51.98% id in 277 aa, and to Thermotoga maritima hypothetical protein Tm0497 SWALL:Q9WYW7 (EMBL:AE001726) (284 aa) fasta scores: E(): 1.3e-43, 47.88% id in 284 aa; putative transmembrane protein 1609471 3289429 BF9343_1281 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211007.1 1608590 R 272559 CDS YP_211008.1 60680864 3289370 complement(1609797..1610225) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0160 SWALL:AAO75267 (EMBL:AE016926) (144 aa) fasta scores: E(): 1.2e-47, 77.69% id in 139 aa; putative transmembrane protein 1610225 3289370 BF9343_1282 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211008.1 1609797 R 272559 CDS YP_211009.1 60680865 3289354 complement(1610258..1611421) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative permease BT0161 SWALL:AAO75268 (EMBL:AE016926) (391 aa) fasta scores: E(): 8.4e-122, 79.06% id in 387 aa, and to Clostridium acetobutylicum integral membrane protein similar to antibiotic resistance protein B.subtilis CAC0560 SWALL:Q97LK0 (EMBL:AE007571) (441 aa) fasta scores: E(): 4.7e-52, 39.11% id in 386 aa, and to Clostridium acetobutylicum predicted permease CAC3482 SWALL:Q97DJ5 (EMBL:AE007845) (394 aa) fasta scores: E(): 6.5e-51, 37.3% id in 386 aa; putative transmembrane transporter permease protein 1611421 3289354 BF9343_1283 Bacteroides fragilis NCTC 9343 putative transmembrane transporter permease protein YP_211009.1 1610258 R 272559 CDS YP_211010.1 60680866 3289351 complement(1611458..1613797) 1 NC_003228.3 Similar to Escherichia coli penicillin-binding protein 1C PbpC or B2519 SWALL:PBPC_ECOLI (SWALL:P76577) (770 aa) fasta scores: E(): 3.4e-71, 32.03% id in 793 aa, and to Bacteroides thetaiotaomicron penicillin-binding protein 1C BT0162 SWALL:AAO75269 (EMBL:AE016926) (772 aa) fasta scores: E(): 0, 80.13% id in 750 aa; putative penicillin-binding protein 1613797 3289351 BF9343_1284 Bacteroides fragilis NCTC 9343 putative penicillin-binding protein YP_211010.1 1611458 R 272559 CDS YP_211011.1 60680867 3289395 complement(1613806..1619400) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0164 SWALL:AAO75271 (EMBL:AE016926) (1791 aa) fasta scores: E(): 0, 75.28% id in 1748 aa, and to Rhizobium loti hypothetical protein Mlr1663 mlr1663 SWALL:Q98K29 (EMBL:AP002998) (1828 aa) fasta scores: E(): 1.5e-60, 24.17% id in 1386 aa, and to Bradyrhizobium japonicum Blr4438 protein blr4438 SWALL:BAC49703 (EMBL:AP005951) (1734 aa) fasta scores: E(): 3.9e-56, 25.18% id in 1461 aa; putative outer membrane protein 1619400 3289395 BF9343_1285 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211011.1 1613806 R 272559 CDS YP_211012.1 60680868 3289327 complement(1619659..1620966) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative cell-cycle protein BT1593 SWALL:AAO76700 (EMBL:AE016932) (426 aa) fasta scores: E(): 5.2e-120, 69.48% id in 426 aa, and to Chlorobium tepidum MesJ protein or CT1614 SWALL:Q8KC15 (EMBL:AE012916) (331 aa) fasta scores: E(): 1.5e-27, 37.41% id in 310 aa, and to Chlorobium tepidum putative cell-cycle protein MesJ SWALL:Q93SU5 (EMBL:AY005137) (351 aa) fasta scores: E(): 1.6e-27, 37.41% id in 310 aa; putative ATP-binding PP-loop protein 1620966 3289327 BF9343_1286 Bacteroides fragilis NCTC 9343 putative ATP-binding PP-loop protein YP_211012.1 1619659 R 272559 CDS YP_211013.1 60680869 3289415 1621091..1623574 1 NC_003228.3 Fusion protein which is similar to Bacteroides thetaiotaomicron putative ferrous iron transport fusion protein BT1592 SWALL:Q8A7D2 (EMBL:AE016932) (828 aa) fasta scores: E(): 0, 84.9% id in 828 aa, and C-terminus is similar to Methanococcus jannaschii ferrous iron transport protein B homolog mj0566 SWALL:FEOB_METJA (SWALL:Q57986) (668 aa) fasta scores: E(): 8.8e-64, 37.39% id in 722 aa, and the N-terminus is similar to Methanosarcina mazei ferrous iron transport protein A MM2578 SWALL:Q8PTX9 (EMBL:AE013502) (82 aa) fasta scores: E(): 1.5e-05, 43.24% id in 74 aa; putative transmembrane ferrous transport fusion protein 1623574 3289415 BF9343_1287 Bacteroides fragilis NCTC 9343 putative transmembrane ferrous transport fusion protein YP_211013.1 1621091 D 272559 CDS YP_211014.1 60680870 3289406 1623571..1623783 1 NC_003228.3 no significant database matches; hypothetical protein 1623783 3289406 BF9343_1288 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211014.1 1623571 D 272559 CDS YP_211015.1 60680871 3289371 complement(1624201..1624416) 1 NC_003228.3 no significant database matches; hypothetical protein 1624416 3289371 BF9343_1289 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211015.1 1624201 R 272559 CDS YP_211016.1 60680872 3289435 1624637..1625380 1 NC_003228.3 Similar to Neisseria meningitidis Tou1 SWALL:Q9RQW5 (EMBL:AF058689) (272 aa) fasta scores: E(): 2.9e-17, 34.86% id in 218 aa, and to Neisseria meningitidis hypothetical protein NMA2029 SWALL:Q9JT17 (EMBL:AL162757) (290 aa) fasta scores: E(): 3.1e-17, 34.86% id in 218 aa, and to Neisseria meningitidis Tou1 SWALL:Q9RMM1 (EMBL:AF194079) (272 aa) fasta scores: E(): 4.5e-17, 35.64% id in 216 aa; possible cell division protein 1625380 3289435 BF9343_1290 Bacteroides fragilis NCTC 9343 possible cell division protein YP_211016.1 1624637 D 272559 CDS YP_211017.1 60680873 3289389 1625557..1625727 1 NC_003228.3 no significant database matches; hypothetical protein 1625727 3289389 BF9343_1291 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211017.1 1625557 D 272559 CDS YP_211018.1 60680874 3289428 1625878..1625994 1 NC_003228.3 no significant database matches; hypothetical protein 1625994 3289428 BF9343_1292 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211018.1 1625878 D 272559 CDS YP_211019.1 60680875 3289352 1626006..1626743 1 NC_003228.3 no significant database matches; hypothetical protein 1626743 3289352 BF9343_1293 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211019.1 1626006 D 272559 CDS YP_211020.1 60680876 3285457 complement(1627132..1630161) 1 NC_003228.3 no significant database matches; hypothetical protein 1630161 3285457 BF9343_1294 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211020.1 1627132 R 272559 CDS YP_211021.1 60680877 3289380 1630321..1631475 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3066 SWALL:Q8A388 (EMBL:AE016938) (702 aa) fasta scores: E(): 1e-21, 29.22% id in 349 aa, and to C-terminus of Bacteroides thetaiotaomicron hypothetical protein BT3741 SWALL:Q8A1C5 (EMBL:AE016942) (602 aa) fasta scores: E(): 9.9e-18, 29.82% id in 285 aa; hypothetical protein 1631475 3289380 BF9343_1295 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211021.1 1630321 D 272559 CDS YP_211022.1 60680878 3285535 1631472..1632485 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical 37.6 kDa protein SWALL:Q93QW7 (EMBL:AF189282) (334 aa) fasta scores: E(): 6.5e-17, 28.34% id in 321 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3067 SWALL:AAO78173 (EMBL:AE016938) (351 aa) fasta scores: E(): 2.4e-12, 24.01% id in 354 aa; hypothetical protein 1632485 3285535 BF9343_1296 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211022.1 1631472 D 272559 CDS YP_211023.1 60680879 3289412 1632605..1633609 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 37.6 kDa protein SWALL:Q93QW7 (EMBL:AF189282) (334 aa) fasta scores: E(): 1.1e-130, 100% id in 334 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3067 SWALL:Q8A387 (EMBL:AE016938) (351 aa) fasta scores: E(): 1.8e-16, 26.17% id in 340 aa; hypothetical protein 1633609 3289412 BF9343_1297 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211023.1 1632605 D 272559 CDS YP_211024.1 60680880 3289345 complement(1633686..1633886) 1 NC_003228.3 no significant database matches; hypothetical protein 1633886 3289345 BF9343_1298 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211024.1 1633686 R 272559 CDS YP_211025.1 60680881 3285510 1634932..1635450 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 1.7e-67, 100% id in 172 aa, and to Bacteroides fragilis putative transcriptional regulatory protein UpbY SWALL:Q9F769 (EMBL:AF285774) (174 aa) fasta scores: E(): 6.7e-45, 67.81% id in 174 aa; putative LPS biosynthesis related transcriptional regulatory protein 1635450 upaY 3285510 upaY Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related transcriptional regulatory protein YP_211025.1 1634932 D 272559 CDS YP_211026.1 60680882 3289441 1635470..1635943 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis UpaZ SWALL:Q93QW5 (EMBL:AF189282) (157 aa) fasta scores: E(): 9e-62, 100% id in 157 aa, and to Bacteroides fragilis UpdZ SWALL:Q8VSS8 (EMBL:AF366394) (160 aa) fasta scores: E(): 3.8e-36, 58.71% id in 155 aa; putative LPS biosynthesis related transcriptional regulatory protein 1635943 upaZ 3289441 upaZ Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related transcriptional regulatory protein YP_211026.1 1635470 D 272559 CDS YP_211027.1 60680883 3287276 1636011..1637459 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative flippase Wzx SWALL:Q93QW4 (EMBL:AF189282) (482 aa) fasta scores: E(): 3.8e-179, 100% id in 482 aa, and to Streptococcus pneumoniae putative oligosaccharide repeat unit transporter CPS19cJ SWALL:Q9RQG9 (EMBL:AF105116) (481 aa) fasta scores: E(): 3.5e-54, 32.7% id in 480 aa; putative LPS biosynthesis related flippase 1637459 wzx3 3287276 wzx3 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related flippase YP_211027.1 1636011 D 272559 CDS YP_211028.1 60680884 3287521 1637456..1638550 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative galactopyranose mutase WcfM SWALL:Q93QW3 (EMBL:AF189282) (364 aa) fasta scores: E(): 5.9e-144, 100% id in 364 aa, and to Escherichia coli UDP-galactopyranose mutase Glf or B2036 SWALL:GLF_ECOLI (SWALL:P37747) (367 aa) fasta scores: E(): 2.6e-88, 60.22% id in 352 aa; putative LPS biosynthesis related UDP-galactopyranose mutase 1638550 wcfM 3287521 wcfM Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related UDP-galactopyranose mutase YP_211028.1 1637456 D 272559 CDS YP_211029.1 60680885 3287429 1638547..1639422 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative glycosyltransferase WcfN SWALL:Q93QW2 (EMBL:AF189282) (291 aa) fasta scores: E(): 1e-121, 100% id in 291 aa, and to Methanobacterium thermoautotrophicum rhamnosyl transferase MTH348 SWALL:O26448 (EMBL:AE000820) (313 aa) fasta scores: E(): 5.5e-14, 29.06% id in 320 aa; putative LPS biosynthesis related glycosyltransferase 1639422 wcfN 3287429 wcfN Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_211029.1 1638547 D 272559 CDS YP_211030.1 60680886 3287310 1639427..1640731 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative polymerase wzy SWALL:Q93QW1 (EMBL:AF189282) (434 aa) fasta scores: E(): 2.1e-170, 100% id in 434 aa; putative LPS biosynthesis related integral membrane protein 1640731 wzy3 3287310 wzy3 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related integral membrane protein YP_211030.1 1639427 D 272559 CDS YP_211031.1 60680887 3287527 1640742..1641785 1 NC_003228.3 Bacteroides fragilis putative glycosyltransferase WcfO SWALL:Q93QW0 (EMBL:AF189282) (347 aa) fasta scores: E(): 6.7e-142, 100% id in 347 aa; hypothetical protein 1641785 wcfO 3287527 wcfO Bacteroides fragilis NCTC 9343 hypothetical protein YP_211031.1 1640742 D 272559 CDS YP_211032.1 60680888 3287132 1641782..1642918 1 NC_003228.3 Similar to Bacteroides fragilis putative glycosyltransferase WcfP SWALL:Q93QV9 (EMBL:AF189282) (378 aa) fasta scores: E(): 8.5e-155, 100% id in 378 aa, and to Streptococcus pneumoniae capsular polysaccharide WciL or sp0353 SWALL:Q9AHC8 (EMBL:AF316639) (372 aa) fasta scores: E(): 5.1e-40, 35.86% id in 368 aa, and to Streptococcus thermophilus Eps3J SWALL:Q8GMA0 (EMBL:AY057915) (366 aa) fasta scores: E(): 4.9e-33, 31.81% id in 374 aa; putative glycosyltransferase 1642918 wcfP 3287132 wcfP Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_211032.1 1641782 D 272559 CDS YP_211033.1 60680889 3287408 1642915..1643721 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative glycosyltransferase WcfQ SWALL:Q93QV8 (EMBL:AF189282) (268 aa) fasta scores: E(): 7.5e-112, 100% id in 268 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1709 SWALL:AAO76816 (EMBL:AE016932) (273 aa) fasta scores: E(): 6.4e-25, 32.83% id in 268 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1645 SWALL:AAO76752 (EMBL:AE016932) (269 aa) fasta scores: E(): 1.6e-24, 31.83% id in 267 aa, and to Erwinia amylovora amylovoran biosynthesis glycosyl transferase AmsE SWALL:AMSE_ERWAM (SWALL:Q46635) (266 aa) fasta scores: E(): 2e-23, 33.33% id in 270 aa; putative glycosyltransferase 1643721 wcfQ 3287408 wcfQ Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_211033.1 1642915 D 272559 CDS YP_211034.1 60680890 3287385 1643750..1644973 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative amino sugar synthetase WcfR SWALL:Q93QV7 (EMBL:AF189282) (407 aa) fasta scores: E(): 1.5e-157, 100% id in 407 aa, and to Streptococcus suis Cps7G cps7G SWALL:Q9RFX1 (EMBL:AF164515) (404 aa) fasta scores: E(): 1.6e-67, 44.92% id in 394 aa, and to Streptococcus pneumoniae capsular polysaccharide biosynthesis protein, putative sp1837 SWALL:Q97P07 (EMBL:AE007475) (408 aa) fasta scores: E(): 1.9e-62, 43.48% id in 407 aa; putative DegT/DnrJ/EryC1/StrS family amino sugar synthetase 1644973 wcfR 3287385 wcfR Bacteroides fragilis NCTC 9343 putative DegT/DnrJ/EryC1/StrS family amino sugar synthetase YP_211034.1 1643750 D 272559 CDS YP_211035.1 60680891 3287205 1645005..1645592 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative undecaprenyl-phosphate galactose phosphotransferase WcfS SWALL:Q93QV6 (EMBL:AF189282) (198 aa) fasta scores: E(): 4.8e-76, 99.48% id in 195 aa, and to Bacteroides thetaiotaomicron glycosyltransferase BT0611 SWALL:AAO75718 (EMBL:AE016928) (197 aa) fasta scores: E(): 5.7e-39, 57.21% id in 194 aa, and to Shigella sonnei ORF8S wbgy or ORF8G SWALL:Q9S0U8 (EMBL:AB028134) (196 aa) fasta scores: E(): 1.6e-38, 55.89% id in 195 aa; undecaprenyl-phosphate galactose phosphotransferase 1645592 wcfS 3287205 wcfS Bacteroides fragilis NCTC 9343 undecaprenyl-phosphate galactose phosphotransferase YP_211035.1 1645005 D 272559 CDS YP_211036.1 60680892 3289137 1645958..1646554 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical 21.8 kDa protein PdiA SWALL:Q93QV5 (EMBL:AF189282) (198 aa) fasta scores: E(): 5.2e-74, 100% id in 198 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1583 SWALL:AAO76690 (EMBL:AE016932) (200 aa) fasta scores: E(): 5.4e-54, 76% id in 200 aa, and to Deinococcus radiodurans thiol:disulfide interchange protein dr0189 SWALL:Q9RXW6 (EMBL:AE001881) (185 aa) fasta scores: E(): 4.4e-09, 36.97% id in 119 aa; hypothetical protein 1646554 pdiA 3289137 pdiA Bacteroides fragilis NCTC 9343 hypothetical protein YP_211036.1 1645958 D 272559 CDS YP_211037.1 60680893 3289366 1646614..1648479 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative transporter trnA SWALL:Q93QV4 (EMBL:AF189282) (621 aa) fasta scores: E(): 0, 100% id in 621 aa, and similar to Bacteroides thetaiotaomicron putative Na+/sulphate transporter BT0539 SWALL:AAO75646 (EMBL:AE016928) (619 aa) fasta scores: E(): 1.9e-169, 71.65% id in 621 aa, and to Pseudomonas aeruginosa probable sodium:sulfate symporter pa3839 SWALL:Q9HXG5 (EMBL:AE004801) (610 aa) fasta scores: E(): 8.5e-39, 36.77% id in 620 aa, and to Photorhabdus temperata YfbS SWALL:Q8GLH4 (EMBL:AY137386) (585 aa) fasta scores: E(): 6.8e-38, 35.25% id in 607 aa; putative transmembrane sodium/sulfate transporter 1648479 3289366 BF9343_1311 Bacteroides fragilis NCTC 9343 putative transmembrane sodium/sulfate transporter YP_211037.1 1646614 D 272559 CDS YP_211038.1 60680894 3289409 complement(1648522..1649301) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative methyltransferase MtfA SWALL:Q93QV3 (EMBL:AF189282) (258 aa) fasta scores: E(): 1.4e-96, 100% id in 258 aa, and similar to Bacteroides thetaiotaomicron putative methyltransferase BT1582 SWALL:AAO76689 (EMBL:AE016932) (335 aa) fasta scores: E(): 8.6e-72, 77.77% id in 243 aa, and to Thermoplasma volcanium hypothetical protein tv0628 or tvg0621501 SWALL:Q97B31 (EMBL:AP000993) (233 aa) fasta scores: E(): 3.5e-13, 28.63% id in 227 aa; putative methyltransferase protein 1649301 3289409 BF9343_1312 Bacteroides fragilis NCTC 9343 putative methyltransferase protein YP_211038.1 1648522 R 272559 CDS YP_211039.1 60680895 3289381 1649354..1649542 1 NC_003228.3 Similar to Oryza sativa water-stress inducible protein wsI SWALL:O22389 (EMBL:AF010584) (86 aa) fasta scores: E(): 8.1, 36.36% id in 55 aa; hypothetical protein 1649542 3289381 BF9343_1313 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211039.1 1649354 D 272559 CDS YP_211040.1 60680896 3289323 complement(1649618..1649998) 1 NC_003228.3 Similar to Neisseria meningitidis lactoylglutathione lyase GloA or NMA2147 or NMB0340 SWALL:LGUL_NEIMA (SWALL:O33393) (138 aa) fasta scores: E(): 6.6e-08, 33.07% id in 127 aa, and to Bacteroides thetaiotaomicron lactoylglutathione lyase BT1580 SWALL:AAO76687 (EMBL:AE016932) (126 aa) fasta scores: E(): 2.9e-50, 90.4% id in 125 aa, and to Fusobacterium nucleatum lactoylglutathione lyase FN0356 SWALL:Q8RGE4 (EMBL:AE010547) (123 aa) fasta scores: E(): 3.2e-25, 56.09% id in 123 aa; putative lactoylglutathione lyase 1649998 3289323 BF9343_1314 Bacteroides fragilis NCTC 9343 putative lactoylglutathione lyase YP_211040.1 1649618 R 272559 CDS YP_211041.1 60680897 3289356 complement(1650120..1651196) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1579 SWALL:AAO76686 (EMBL:AE016932) (377 aa) fasta scores: E(): 8e-44, 53.45% id in 376 aa; hypothetical protein 1651196 3289356 BF9343_1315 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211041.1 1650120 R 272559 CDS YP_211042.1 60680898 3289362 complement(1651216..1651941) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative metal dependent hydrolase BT1578 SWALL:AAO76685 (EMBL:AE016932) (243 aa) fasta scores: E(): 6.6e-81, 82.15% id in 241 aa, and to Fusobacterium nucleatum metal dependent hydrolase FN1387 SWALL:Q8R614 (EMBL:AE010643) (237 aa) fasta scores: E(): 2.9e-28, 39.35% id in 216 aa, and to Clostridium tetani putative metal dependent hydrolase CTC00445 SWALL:AAO35079 (EMBL:AE015937) (253 aa) fasta scores: E(): 7.5e-28, 36.77% id in 242 aa; hypothetical protein 1651941 3289362 BF9343_1316 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211042.1 1651216 R 272559 CDS YP_211043.1 60680899 3289209 complement(1652013..1652720) 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri pyridoxamine 5'-phosphate oxidase PdxH or B1638 or SF1663 or s1795 SWALL:PDXH_ECOLI (SWALL:P28225) (217 aa) fasta scores: E(): 1.4e-35, 46.72% id in 214 aa, and to Bacteroides thetaiotaomicron pyridoxamine 5'-phosphate oxidase BT1577 SWALL:AAO76684 (EMBL:AE016932) (213 aa) fasta scores: E(): 1e-68, 77.72% id in 211 aa, and to Synechocystis sp. pyridoxamine 5'-phosphate oxidase PdxH or sll1440 SWALL:PDXH_SYNY3 (SWALL:P74211) (230 aa) fasta scores: E(): 1.6e-40, 46.66% id in 225 aa; putative pyridoxamine 5'-phosphate oxidase 1652720 pdxH 3289209 pdxH Bacteroides fragilis NCTC 9343 putative pyridoxamine 5'-phosphate oxidase YP_211043.1 1652013 R 272559 CDS YP_211044.1 60680900 3289431 complement(1652738..1653442) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, with a conserved domain BT1576 SWALL:AAO76683 (EMBL:AE016932) (234 aa) fasta scores: E(): 1.9e-69, 70.94% id in 234 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0187 SWALL:AAO75294 (EMBL:AE016926) (234 aa) fasta scores: E(): 1.2e-56, 58.12% id in 234 aa, and to Vibrio parahaemolyticus hypothetical protein vpa0042 SWALL:BAC61385 (EMBL:AP005084) (231 aa) fasta scores: E(): 1.1e-29, 39.4% id in 236 aa; hypothetical protein 1653442 3289431 BF9343_1318 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211044.1 1652738 R 272559 CDS YP_211045.1 60680901 3289433 1653695..1655512 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT4697 SWALL:AAO79802 (EMBL:AE016946) (589 aa) fasta scores: E(): 2.2e-26, 27.27% id in 594 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT3150 SWALL:AAO78256 (EMBL:AE016939) (157 aa) fasta scores: E(): 3e-06, 30.55% id in 144 aa; putative transmembrane AraC family transcriptional regulator 1655512 3289433 BF9343_1319 Bacteroides fragilis NCTC 9343 putative transmembrane AraC family transcriptional regulator YP_211045.1 1653695 D 272559 CDS YP_211046.1 60680902 3289410 1655749..1656291 1 NC_003228.3 C-terminus is similar to the C-terminus of Chlorobium tepidum hypothetical protein CT0347 SWALL:Q8KFH9 (EMBL:AE012812) (181 aa) fasta scores: E(): 6.2e-06, 35.48% id in 93 aa; hypothetical protein 1656291 3289410 BF9343_1320 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211046.1 1655749 D 272559 CDS YP_211047.1 60680903 3289208 complement(1656510..1657520) 1 NC_003228.3 Similar to Escherichia coli D-lactate dehydrogenase LdhA or HslI or HtpH or B1380 SWALL:LDHD_ECOLI (SWALL:P52643) (329 aa) fasta scores: E(): 1.8e-61, 51.98% id in 327 aa, and to Bacteroides thetaiotaomicron putative dehydrogenase BT1575 SWALL:AAO76682 (EMBL:AE016932) (333 aa) fasta scores: E(): 4.5e-117, 91.56% id in 332 aa, and to Fusobacterium nucleatum D-lactate dehydrogenase FN0511 SWALL:Q8RG11 (EMBL:AE010563) (335 aa) fasta scores: E(): 1.2e-70, 57.79% id in 327 aa; putative D-lactate dehydrogenase 1657520 ldhA 3289208 ldhA Bacteroides fragilis NCTC 9343 putative D-lactate dehydrogenase YP_211047.1 1656510 R 272559 CDS YP_211048.1 60680904 3289359 1657743..1659248 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein precursor BT1574 SWALL:AAO76681 (EMBL:AE016932) (477 aa) fasta scores: E(): 2.1e-29, 47.09% id in 516 aa; putative outer membrane protein 1659248 3289359 BF9343_1322 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211048.1 1657743 D 272559 CDS YP_211049.1 60680905 3289372 complement(1660619..1661908) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1573 SWALL:AAO76680 (EMBL:AE016932) (429 aa) fasta scores: E(): 3.3e-145, 80.18% id in 429 aa; hypothetical protein 1661908 3289372 BF9343_1324 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211049.1 1660619 R 272559 CDS YP_211050.1 60680906 3289358 1662072..1662575 1 NC_003228.3 Similar to Erwinia chrysanthemi putative RNA polymerase ECF-type sigma factor HrpL SWALL:Q8KUM5 (EMBL:AF448202) (184 aa) fasta scores: E(): 1.3e-08, 29.73% id in 148 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1572 SWALL:AAO76679 (EMBL:AE016932) (167 aa) fasta scores: E(): 6.2e-44, 65.26% id in 167 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1197 SWALL:AAO76304 (EMBL:AE016930) (167 aa) fasta scores: E(): 1.9e-34, 57.22% id in 166 aa; putative RNA polymerase ECF-type sigma factor 1662575 3289358 BF9343_1325 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_211050.1 1662072 D 272559 CDS YP_211051.1 60680907 3289355 1662795..1663475 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1567 SWALL:AAO76674 (EMBL:AE016932) (226 aa) fasta scores: E(): 5.4e-80, 90.26% id in 226 aa, and to Corynebacterium glutamicum uncharacterized Acr CGL0233 SWALL:Q8NTR9 (EMBL:AP005274) (246 aa) fasta scores: E(): 3.6e-24, 37.37% id in 206 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0202 SWALL:Q8FU19 (EMBL:AP005214) (275 aa) fasta scores: E(): 9.8e-22, 36.27% id in 204 aa; putative transmembrane protein 1663475 3289355 BF9343_1326 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211051.1 1662795 D 272559 CDS YP_211052.1 60680908 3289442 1663514..1664173 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative aluminum resistance protein BT1566 SWALL:AAO76673 (EMBL:AE016932) (220 aa) fasta scores: E(): 8.5e-72, 80.36% id in 219 aa, and to Clostridium acetobutylicum PP-loop superfamily ATPase, confers aluminum resistance CAC3627 SWALL:Q97D53 (EMBL:AE007858) (222 aa) fasta scores: E(): 2e-56, 65.25% id in 213 aa, and to Bacillus halodurans aluminum resistance protein BH2244 SWALL:Q9KAP3 (EMBL:AP001514) (223 aa) fasta scores: E(): 3.7e-54, 63.88% id in 216 aa; putative ExsB family protein 1664173 3289442 BF9343_1327 Bacteroides fragilis NCTC 9343 putative ExsB family protein YP_211052.1 1663514 D 272559 CDS YP_211053.1 60680909 3289373 1664187..1664642 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1564 SWALL:AAO76671 (EMBL:AE016932) (151 aa) fasta scores: E(): 5.4e-59, 93.37% id in 151 aa, and to Staphylococcus epidermidis conserved hypothetical protein se0510 SWALL:Q8CTG5 (EMBL:AE016745) (166 aa) fasta scores: E(): 1.3e-44, 76% id in 150 aa, and to Staphylococcus aureus hypothetical protein sav0728 sav0728 or sa0683 or mw0690 SWALL:Q99VP5 (EMBL:AP003360) (166 aa) fasta scores: E(): 5.3e-44, 74.66% id in 150 aa; putative GTP-cyclohydrolase protein 1664642 3289373 BF9343_1328 Bacteroides fragilis NCTC 9343 putative GTP-cyclohydrolase protein YP_211053.1 1664187 D 272559 CDS YP_211054.1 60680910 3289416 complement(1664652..1665125) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical upf0247 protein Bt1562 SWALL:AAO76669 (EMBL:AE016932) (157 aa) fasta scores: E(): 1.3e-48, 85.98% id in 157 aa, and to Enterococcus faecalis hypothetical upf0247 protein Ef3025 SWALL:AAO82709 (EMBL:AE016956) (159 aa) fasta scores: E(): 1.4e-15, 34.81% id in 158 aa, and to Staphylococcus aureus hypothetical upf0247 protein sav0024/sa0023 sav0024 or sa0023 SWALL:BAC57492 (EMBL:AP003358) (159 aa) fasta scores: E(): 6.1e-15, 34.17% id in 158 aa; hypothetical protein 1665125 3289416 BF9343_1329 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211054.1 1664652 R 272559 CDS YP_211055.1 60680911 3289343 1665222..1665614 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1561 SWALL:Q8A7G3 (EMBL:AE016932) (130 aa) fasta scores: E(): 2.5e-30, 61.53% id in 130 aa; hypothetical protein 1665614 3289343 BF9343_1330 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211055.1 1665222 D 272559 CDS YP_211056.1 60680912 3286008 1665607..1666446 1 NC_003228.3 Similar to Pseudomonas aeruginosa nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]) NadC or pa4524 SWALL:NADC_PSEAE (SWALL:P30819) (282 aa) fasta scores: E(): 1.5e-33, 40.89% id in 269 aa, and to Bacteroides thetaiotaomicron nicotinate-nucleotide pyrophosphorylase BT1560 SWALL:AAO76667 (EMBL:AE016932) (282 aa) fasta scores: E(): 5.6e-95, 92.41% id in 277 aa, and to Chlorobium tepidum nicotinate-nucleotide pyrophosphorylase NadC or CT1936 SWALL:Q8KB55 (EMBL:AE012944) (300 aa) fasta scores: E(): 4.2e-41, 46.18% id in 275 aa. This CDS overlaps 6 nt with the CDS upstream.; putative nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]) 1666446 nadC 3286008 nadC Bacteroides fragilis NCTC 9343 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]) YP_211056.1 1665607 D 272559 CDS YP_211057.1 60680913 3289382 1666711..1667268 1 NC_003228.3 Similar to Bacillus subtilis RNA polymerase sigma factor SigV or BSU27120 SWALL:SIGV_BACSU (SWALL:O05404) (166 aa) fasta scores: E(): 0.00019, 23.37% id in 154 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1559 SWALL:AAO76666 (EMBL:AE016932) (154 aa) fasta scores: E(): 1e-49, 87.09% id in 155 aa, and to Bacteroides thetaiotaomicron putative RNA polymerase ECF-type sigma factor BT4720 SWALL:AAO79825 (EMBL:AE016946) (182 aa) fasta scores: E(): 2.2e-31, 54.54% id in 176 aa; putative RNA polymerase ECF-type sigma factor 1667268 3289382 BF9343_1332 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_211057.1 1666711 D 272559 CDS YP_211058.1 60680914 3289386 1667252..1668292 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1558 SWALL:AAO76665 (EMBL:AE016932) (350 aa) fasta scores: E(): 5.8e-84, 63.27% id in 354 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4721 SWALL:AAO79826 (EMBL:AE016946) (418 aa) fasta scores: E(): 2.1e-11, 26% id in 423 aa; hypothetical protein 1668292 3289386 BF9343_1333 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211058.1 1667252 D 272559 CDS YP_211059.1 60680915 3285506 1668329..1668841 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1557 SWALL:Q8A7G7 (EMBL:AE016932) (169 aa) fasta scores: E(): 1.4e-48, 66.66% id in 171 aa; hypothetical protein 1668841 3285506 BF9343_1334 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211059.1 1668329 D 272559 CDS YP_211060.1 60680916 3285466 1668855..1669559 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1556 SWALL:Q8A7G8 (EMBL:AE016932) (242 aa) fasta scores: E(): 1.7e-46, 55.74% id in 235 aa; hypothetical protein 1669559 3285466 BF9343_1335 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211060.1 1668855 D 272559 CDS YP_211061.1 60680917 3285420 1669617..1670561 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron dioxygenase, related to 2-nitropropane dioxygenase BT1555 SWALL:Q8A7G9 (EMBL:AE016932) (311 aa) fasta scores: E(): 8.6e-97, 85.39% id in 308 aa, and to Thermoanaerobacter tengcongensis dioxygenases related to 2-nitropropane dioxygenase TTE1474 SWALL:Q8R9V8 (EMBL:AE013105) (313 aa) fasta scores: E(): 1e-42, 44.14% id in 299 aa, and to Clostridium acetobutylicum dioxygenase related to 2-nitropropane dioxygenase CAC3576 SWALL:Q97DA4 (EMBL:AE007854) (310 aa) fasta scores: E(): 2.4e-41, 42.95% id in 305 aa; putative dioxygenase 1670561 3285420 BF9343_1336 Bacteroides fragilis NCTC 9343 putative dioxygenase YP_211061.1 1669617 D 272559 CDS YP_211062.1 60680918 3289087 complement(1670657..1671766) 1 NC_003228.3 Similar to Bacillus subtilis alanine dehydrogenase Ald or SpoVN or BSU31930 SWALL:DHA_BACSU (SWALL:Q08352) (378 aa) fasta scores: E(): 2.6e-67, 55.76% id in 364 aa, and to Bacteroides thetaiotaomicron alanine dehydrogenase BT1554 SWALL:AAO76661 (EMBL:AE016932) (368 aa) fasta scores: E(): 2e-117, 89.67% id in 368 aa, and to Vibrio cholerae alanine dehydrogenase vc1905 SWALL:Q9KQU3 (EMBL:AE004266) (374 aa) fasta scores: E(): 2.6e-73, 58.95% id in 363 aa; putative alanine dehydrogenase 1671766 ald 3289087 ald Bacteroides fragilis NCTC 9343 putative alanine dehydrogenase YP_211062.1 1670657 R 272559 CDS YP_211063.1 60680919 3285500 1671955..1673607 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1550 SWALL:AAO76657 (EMBL:AE016932) (550 aa) fasta scores: E(): 6.1e-180, 77.45% id in 550 aa; putative peptidase 1673607 3285500 BF9343_1338 Bacteroides fragilis NCTC 9343 putative peptidase YP_211063.1 1671955 D 272559 CDS YP_211064.1 60680920 3285546 1673656..1675293 1 NC_003228.3 Similar to Salmonella dublin probable dipeptidase PipD SWALL:PEPD_SALDU (SWALL:O85304) (433 aa) fasta scores: E(): 8.5e-21, 29.38% id in 405 aa, and to Bacteroides thetaiotaomicron putative secreted peptidase BT1549 SWALL:AAO76656 (EMBL:AE016932) (545 aa) fasta scores: E(): 2.2e-199, 85.05% id in 542 aa, and to Salmonella typhimurium pathogenicity island encoded protein: Spi3 Pipd or STM1094 SWALL:Q8ZQ55 (EMBL:AE008747) (489 aa) fasta scores: E(): 5.2e-21, 28.26% id in 513 aa; putative dipeptidase 1675293 3285546 BF9343_1339 Bacteroides fragilis NCTC 9343 putative dipeptidase YP_211064.1 1673656 D 272559 CDS YP_211065.1 60680921 3285541 1675401..1677146 1 NC_003228.3 Similar to Streptococcus thermophilus phosphoglucomutase PgmA SWALL:Q9K560 (EMBL:AJ243290) (572 aa) fasta scores: E(): 1.3e-80, 41.91% id in 575 aa, and to Bacteroides thetaiotaomicron phosphoglucomutase phosphomannomutase BT1548 SWALL:AAO76655 (EMBL:AE016932) (581 aa) fasta scores: E(): 3.3e-217, 92.42% id in 581 aa, and to Clostridium perfringens probable phosphomannomutase ManB or CPE1873 SWALL:Q8XJ88 (EMBL:AP003192) (575 aa) fasta scores: E(): 1.1e-94, 47.28% id in 552 aa; putative phosphoglucomutase 1677146 3285541 BF9343_1340 Bacteroides fragilis NCTC 9343 putative phosphoglucomutase YP_211065.1 1675401 D 272559 CDS YP_211066.1 60680922 3285434 1677285..1677533 1 NC_003228.3 no significant database matches; hypothetical protein 1677533 3285434 BF9343_1341 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211066.1 1677285 D 272559 CDS YP_211067.1 60680923 3285451 1678036..1678614 1 NC_003228.3 Similar to Pseudomonas aeruginosa RNA polymerase sigma-H factor AlgU or AlgT or pa0762 SWALL:RPSH_PSEAE (SWALL:Q06198) (193 aa) fasta scores: E(): 0.00029, 25.73% id in 171 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3748 SWALL:AAO78853 (EMBL:AE016942) (180 aa) fasta scores: E(): 4.6e-23, 41.57% id in 178 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT2463 SWALL:AAO77570 (EMBL:AE016936) (189 aa) fasta scores: E(): 6.4e-23, 41.3% id in 184 aa; putative RNA polymerase ECF-type sigma factor 1678614 3285451 BF9343_1342 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_211067.1 1678036 D 272559 CDS YP_211068.1 60680924 3285445 1678667..1679602 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 2e-22, 33.84% id in 260 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2561 SWALL:AAO77668 (EMBL:AE016936) (312 aa) fasta scores: E(): 1.7e-38, 36.94% id in 314 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2462 SWALL:AAO77569 (EMBL:AE016936) (311 aa) fasta scores: E(): 2.3e-36, 36.33% id in 311 aa; putative anti-sigma factor 1679602 3285445 BF9343_1343 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_211068.1 1678667 D 272559 CDS YP_211069.1 60680925 3285280 1679751..1683146 1 NC_003228.3 From codon 114, similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2894 SWALL:AAO78000 (EMBL:AE016937) (1018 aa) fasta scores: E(): 5.6e-79, 29.39% id in 1041 aa, and from codon 114, similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3346 SWALL:AAO78452 (EMBL:AE016940) (1027 aa) fasta scores: E(): 2.7e-75, 30.52% id in 1055 aa, and from codon 114, similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0439 SWALL:AAO75546 (EMBL:AE016927) (1039 aa) fasta scores: E(): 4.8e-75, 29.86% id in 1048 aa; putative outer membrane protein 1683146 3285280 BF9343_1344 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211069.1 1679751 D 272559 CDS YP_211070.1 60680926 3285454 1683162..1684859 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0141 SWALL:AAO75248 (EMBL:AE016926) (579 aa) fasta scores: E(): 3.2e-19, 25.37% id in 607 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0451 SWALL:AAO75558 (EMBL:AE016927) (553 aa) fasta scores: E(): 1.1e-13, 26.45% id in 601 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3603 SWALL:AAO78708 (EMBL:AE016941) (561 aa) fasta scores: E(): 2.3e-09, 23.85% id in 612 aa; putative outer membrane protein 1684859 3285454 BF9343_1345 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211070.1 1683162 D 272559 CDS YP_211071.1 60680927 3285363 1684925..1685359 1 NC_003228.3 no significant database matches; hypothetical protein 1685359 3285363 BF9343_1346 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211071.1 1684925 D 272559 CDS YP_211072.1 60680928 3285481 1685474..1686976 1 NC_003228.3 Similar to Phanerochaete chrysosporium alpha-galactosidase AgaL SWALL:Q9HFZ9 (EMBL:AF246263) (438 aa) fasta scores: E(): 2.2e-45, 40.75% id in 373 aa, and to Bacteroides thetaiotaomicron alpha-galactosidase precursor BT3065 SWALL:AAO78171 (EMBL:AE016938) (503 aa) fasta scores: E(): 1e-168, 79.72% id in 503 aa; putative alpha-galactosidase 1686976 3285481 BF9343_1347 Bacteroides fragilis NCTC 9343 putative alpha-galactosidase YP_211072.1 1685474 D 272559 CDS YP_211073.1 60680929 3285393 complement(1687052..1687267) 1 NC_003228.3 no significant database matches; hypothetical protein 1687267 3285393 BF9343_1348 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211073.1 1687052 R 272559 CDS YP_211074.1 60680930 3285387 1687506..1688402 1 NC_003228.3 Similar to Clostridium perfringens histidine decarboxylase proenzyme precursor Hdc or CPE0390 SWALL:DCHS_CLOPE (SWALL:P04194) (319 aa) fasta scores: E(): 6.4e-24, 39.93% id in 298 aa, and to Lactobacillus sp. histidine decarboxylase proenzyme HdcA SWALL:DCHS_LACS3 (SWALL:P00862) (310 aa) fasta scores: E(): 9.9e-24, 33.67% id in 294 aa, and to Oenococcus oeni histidine decarboxylase HdcA SWALL:O66000 (EMBL:U58865) (316 aa) fasta scores: E(): 6.5e-18, 33% id in 300 aa; putative histidine decarboxylase 1688402 3285387 BF9343_1349 Bacteroides fragilis NCTC 9343 putative histidine decarboxylase YP_211074.1 1687506 D 272559 CDS YP_211075.1 60680931 3285386 complement(1688530..1689312) 1 NC_003228.3 Similar to Pseudomonas aeruginosa NADH pyrophosphatase NudC or pa1823 SWALL:NUDC_PSEAE (SWALL:O86062) (278 aa) fasta scores: E(): 7.8e-27, 35.4% id in 257 aa, and to Bacteroides thetaiotaomicron NADH pyrophosphatase, MutT family hydrolase BT1544 SWALL:AAO76651 (EMBL:AE016932) (262 aa) fasta scores: E(): 6.3e-75, 72.76% id in 257 aa, and to Methanosarcina acetivorans NAD+ pyrophosphatase ma1439 SWALL:Q8TQV0 (EMBL:AE010813) (285 aa) fasta scores: E(): 3.9e-31, 38.58% id in 254 aa; putative NADH pyrophosphatase 1689312 3285386 BF9343_1350 Bacteroides fragilis NCTC 9343 putative NADH pyrophosphatase YP_211075.1 1688530 R 272559 CDS YP_211076.1 60680932 3285401 complement(1689344..1690933) 1 NC_003228.3 Similar to Streptomyces virginiae putative ATP-binding component of ATP transporter VarM SWALL:Q9LBV4 (EMBL:AB035547) (535 aa) fasta scores: E(): 2.3e-45, 32.95% id in 522 aa, and to Bacteroides thetaiotaomicron putative ABC transporter ATP-binding protein BT1543 SWALL:AAO76650 (EMBL:AE016932) (532 aa) fasta scores: E(): 2.5e-128, 66.47% id in 531 aa, and to Streptomyces coelicolor putative ABC transporter ATP-binding protein sco0636 or scf56.20 SWALL:Q9RD47 (EMBL:AL939106) (544 aa) fasta scores: E(): 2.1e-50, 33.83% id in 529 aa; putative ATP-binding ABC transporter protein 1690933 3285401 BF9343_1351 Bacteroides fragilis NCTC 9343 putative ATP-binding ABC transporter protein YP_211076.1 1689344 R 272559 CDS YP_211077.1 60680933 3285424 complement(1691250..1692626) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative pyridine nucleotide-disulfide oxidoreductase BT1542 SWALL:AAO76649 (EMBL:AE016932) (457 aa) fasta scores: E(): 4.8e-121, 70.45% id in 457 aa, and to Escherichia coli probable pyridine nucleotide-disulfide oxidoreductase YkgC or B0304 SWALL:YKGC_ECOLI (SWALL:P77212) (441 aa) fasta scores: E(): 7.5e-66, 50.98% id in 457 aa, and to Escherichia coli O6 probable pyridine nucleotide-disulfide oxidoreductase YkgC or C0420 SWALL:Q8FKJ9 (EMBL:AE016756) (450 aa) fasta scores: E(): 7.6e-66, 51.2% id in 457 aa; putative pyridine nucleotide-disulfide oxidoreductase 1692626 3285424 BF9343_1352 Bacteroides fragilis NCTC 9343 putative pyridine nucleotide-disulfide oxidoreductase YP_211077.1 1691250 R 272559 CDS YP_211078.1 60680934 3285518 complement(1692683..1693285) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1541 SWALL:Q8A7I3 (EMBL:AE016932) (193 aa) fasta scores: E(): 5.5e-68, 90.67% id in 193 aa, and to Escherichia coli O6 hypothetical protein Ykgb Ykgb or C0418 SWALL:Q8FKK0 (EMBL:AE016756) (200 aa) fasta scores: E(): 1.1e-30, 51.07% id in 186 aa, and to Salmonella typhimurium putative inner membrane protein STM0566 SWALL:Q8ZR55 (EMBL:AE008722) (186 aa) fasta scores: E(): 1.4e-30, 50.27% id in 185 aa; putative transmembrane protein 1693285 3285518 BF9343_1353 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211078.1 1692683 R 272559 CDS YP_211079.1 60680935 3285294 complement(1693373..1694218) 1 NC_003228.3 Similar to Pseudomonas putida transcriptional regulator PobR protein SWALL:Q9R9T2 (EMBL:AJ251792) (292 aa) fasta scores: E(): 2.9e-12, 25.19% id in 262 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT1540 SWALL:AAO76647 (EMBL:AE016932) (279 aa) fasta scores: E(): 2.8e-84, 81.64% id in 267 aa; putative AraC family transcriptional regulatory protein 1694218 3285294 BF9343_1354 Bacteroides fragilis NCTC 9343 putative AraC family transcriptional regulatory protein YP_211079.1 1693373 R 272559 CDS YP_211080.1 60680936 3289232 complement(1694215..1694622) 1 NC_003228.3 Similar to Bacillus halodurans cytidine deaminase Cdd or BH1366 SWALL:CDD_BACHD (SWALL:Q9KD53) (132 aa) fasta scores: E(): 2.2e-12, 42.22% id in 135 aa, and to Bacteroides thetaiotaomicron cytidine deaminase BT1539 SWALL:Q8A7I5 (EMBL:AE016932) (131 aa) fasta scores: E(): 5.4e-47, 89.31% id in 131 aa, and to Bacillus anthracis cytidine deaminase Cdd-2 or ba4525 SWALL:Q81LT6 (EMBL:AE017038) (132 aa) fasta scores: E(): 3.2e-13, 42.22% id in 135 aa; putative cytidine deaminase 1694622 cdd 3289232 cdd Bacteroides fragilis NCTC 9343 putative cytidine deaminase YP_211080.1 1694215 R 272559 CDS YP_211081.1 60680937 3285346 1694813..1695712 1 NC_003228.3 Similar to Prevotella intermedia hemagglutinin Phg SWALL:O30793 (EMBL:AF017417) (309 aa) fasta scores: E(): 3.1e-32, 43.6% id in 305 aa, and to Bacteroides thetaiotaomicron hemagglutinin BT1538 SWALL:Q8A7I6 (EMBL:AE016932) (301 aa) fasta scores: E(): 1e-99, 81.39% id in 301 aa, and to Clostridium tetani N-acetylmuramoyl-L-alanine amidase-like protein CTC02109 SWALL:AAO36607 (EMBL:AE015943) (266 aa) fasta scores: E(): 1e-13, 38.15% id in 152 aa; putative hemagglutinin 1695712 3285346 BF9343_1356 Bacteroides fragilis NCTC 9343 putative hemagglutinin YP_211081.1 1694813 D 272559 CDS YP_211082.1 60680938 3285180 1695796..1696005 1 NC_003228.3 no significant database matches; hypothetical protein 1696005 3285180 BF9343_1357 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211082.1 1695796 D 272559 CDS YP_211083.1 60680939 3285427 1696036..1697283 1 NC_003228.3 Similar to Pseudomonas aeruginosa transporter component CzrB protein SWALL:Q9RLI9 (EMBL:Y14018) (405 aa) fasta scores: E(): 6.6e-06, 24.36% id in 394 aa, and to Bacteroides thetaiotaomicron ABC transporter permease BT1536 SWALL:AAO76643 (EMBL:AE016932) (415 aa) fasta scores: E(): 2.4e-118, 85.54% id in 415 aa, and to Xanthomonas axonopodis ABC transporter permease YbjY or XAC3638 SWALL:Q8PGH8 (EMBL:AE012014) (423 aa) fasta scores: E(): 1.3e-13, 23.89% id in 406 aa; putative ABC transporter component protein 1697283 3285427 BF9343_1358 Bacteroides fragilis NCTC 9343 putative ABC transporter component protein YP_211083.1 1696036 D 272559 CDS YP_211084.1 60680940 3285319 1697404..1698669 1 NC_003228.3 C-terminus is similar to Escherichia coli macrolide-specific ABC-type efflux carrier MacB or B0879 SWALL:MACB_ECOLI (SWALL:P75831) (648 aa) fasta scores: E(): 0.00014, 25.67% id in 296 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1533 SWALL:Q8A7J1 (EMBL:AE016932) (429 aa) fasta scores: E(): 4e-46, 37.87% id in 433 aa, and to Listeria innocua hypothetical protein LIN0234 SWALL:Q92F72 (EMBL:AL596163) (402 aa) fasta scores: E(): 1.4e-13, 25.53% id in 419 aa; putative permease component of ABC transporter 1698669 3285319 BF9343_1359 Bacteroides fragilis NCTC 9343 putative permease component of ABC transporter YP_211084.1 1697404 D 272559 CDS YP_211085.1 60680941 3285479 1698689..1699957 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter permease BT1532 SWALL:AAO76639 (EMBL:AE016932) (417 aa) fasta scores: E(): 6.6e-40, 31.67% id in 423 aa, and to Bacillus subtilis hypothetical protein YvrN or BSU33260 SWALL:YVRN_BACSU (SWALL:P46324) (416 aa) fasta scores: E(): 1.2e-05, 23.96% id in 338 aa; putative ABC transporter permease component 1699957 3285479 BF9343_1360 Bacteroides fragilis NCTC 9343 putative ABC transporter permease component YP_211085.1 1698689 D 272559 CDS YP_211086.1 60680942 3285253 1699976..1701283 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1533 SWALL:AAO76640 (EMBL:AE016932) (429 aa) fasta scores: E(): 1.9e-48, 35.78% id in 436 aa, and to Bacteroides thetaiotaomicron putative ABC transporter permease BT1465 SWALL:AAO76572 (EMBL:AE016931) (806 aa) fasta scores: E(): 7.3e-13, 25.49% id in 404 aa; putative ABC transporter permease component 1701283 3285253 BF9343_1361 Bacteroides fragilis NCTC 9343 putative ABC transporter permease component YP_211086.1 1699976 D 272559 CDS YP_211087.1 60680943 3285239 1701302..1702573 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter permease BT1532 SWALL:AAO76639 (EMBL:AE016932) (417 aa) fasta scores: E(): 1.5e-19, 26.83% id in 436 aa; putative ABC transporter permease component 1702573 3285239 BF9343_1362 Bacteroides fragilis NCTC 9343 putative ABC transporter permease component YP_211087.1 1701302 D 272559 CDS YP_211088.1 60680944 3285256 1702599..1703906 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1533 SWALL:AAO76640 (EMBL:AE016932) (429 aa) fasta scores: E(): 8.2e-52, 38.21% id in 437 aa; putative ABC transporter permease component 1703906 3285256 BF9343_1363 Bacteroides fragilis NCTC 9343 putative ABC transporter permease component YP_211088.1 1702599 D 272559 CDS YP_211089.1 60680945 3285291 1703913..1705184 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter permease BT1532 SWALL:AAO76639 (EMBL:AE016932) (417 aa) fasta scores: E(): 9.5e-23, 24.94% id in 433 aa, and to Xanthomonas campestris ABC transporter permease Ybjz or XCC0565 SWALL:Q8PCY5 (EMBL:AE012154) (402 aa) fasta scores: E(): 5.2e-05, 21.1% id in 436 aa; putative ABC transporter permease component 1705184 3285291 BF9343_1364 Bacteroides fragilis NCTC 9343 putative ABC transporter permease component YP_211089.1 1703913 D 272559 CDS YP_211090.1 60680946 3285269 complement(1705332..1706231) 1 NC_003228.3 C-terminus is similar to C-terminus of Brucella suis transcriptional regulatory protein PobR or BRA0640 SWALL:Q8FW25 (EMBL:AE014560) (305 aa) fasta scores: E(): 2.4e-05, 25.31% id in 158 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT0729 SWALL:AAO75836 (EMBL:AE016928) (300 aa) fasta scores: E(): 1.6e-76, 68.01% id in 297 aa, and to Bacteroides thetaiotaomicron transcription regulator, AraC family BT1396 SWALL:AAO76503 (EMBL:AE016931) (305 aa) fasta scores: E(): 1.2e-70, 59.66% id in 295 aa; putative AraC family transcriptional regulator 1706231 3285269 BF9343_1365 Bacteroides fragilis NCTC 9343 putative AraC family transcriptional regulator YP_211090.1 1705332 R 272559 CDS YP_211091.1 60680947 3285292 1706548..1707213 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1535 SWALL:AAO76642 (EMBL:AE016932) (221 aa) fasta scores: E(): 1.4e-71, 92.76% id in 221 aa, and to Bacteroides thetaiotaomicron ABC transporter, ATP-binding protein BT0694 SWALL:AAO75801 (EMBL:AE016928) (224 aa) fasta scores: E(): 1.9e-45, 61.36% id in 220 aa; putative ATP-binding component of ABC transporter 1707213 3285292 BF9343_1366 Bacteroides fragilis NCTC 9343 putative ATP-binding component of ABC transporter YP_211091.1 1706548 D 272559 CDS YP_211092.1 60680948 3285178 1707255..1708529 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1533 SWALL:AAO76640 (EMBL:AE016932) (429 aa) fasta scores: E(): 7.4e-64, 44.26% id in 427 aa, and to Bradyrhizobium japonicum BLL6980 protein BLL6980 SWALL:BAC52245 (EMBL:AP005960) (410 aa) fasta scores: E(): 4e-09, 23.45% id in 405 aa, and to Bacteroides thetaiotaomicron putative ABC transporter permease BT1465 SWALL:AAO76572 (EMBL:AE016931) (806 aa) fasta scores: E(): 1.5e-08, 24.62% id in 398 aa; putative ABC transporter permease component 1708529 3285178 BF9343_1367 Bacteroides fragilis NCTC 9343 putative ABC transporter permease component YP_211092.1 1707255 D 272559 CDS YP_211093.1 60680949 3285459 1709947..1710612 1 NC_003228.3 Similar to Erwinia chrysanthemi ATPase UntA SWALL:Q8RKC8 (EMBL:AJ438188) (235 aa) fasta scores: E(): 3.2e-37, 52.03% id in 221 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1535 SWALL:Q8A7I9 (EMBL:AE016932) (221 aa) fasta scores: E(): 6.2e-73, 94.11% id in 221 aa, and to Bacteroides thetaiotaomicron ABC transporter, ATP-binding protein BT0694 SWALL:Q8A9X1 (EMBL:AE016928) (224 aa) fasta scores: E(): 2.8e-45, 60.45% id in 220 aa; putative ABC transport system ATP-binding protein 1710612 3285459 BF9343_1369 Bacteroides fragilis NCTC 9343 putative ABC transport system ATP-binding protein YP_211093.1 1709947 D 272559 CDS YP_211094.1 60680950 3285241 1710628..1711272 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1534 SWALL:AAO76641 (EMBL:AE016932) (208 aa) fasta scores: E(): 7.2e-26, 42.25% id in 213 aa; hypothetical protein 1711272 3285241 BF9343_1370 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211094.1 1710628 D 272559 CDS YP_211095.1 60680951 3285240 1711286..1712584 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1533 SWALL:AAO76640 (EMBL:AE016932) (429 aa) fasta scores: E(): 3.3e-64, 42.85% id in 434 aa, and to Anabaena sp. hypothetical protein ALR0446 SWALL:Q8YZL1 (EMBL:AP003582) (423 aa) fasta scores: E(): 2.6e-09, 23.41% id in 427 aa; putative ABC transporter permease component 1712584 3285240 BF9343_1371 Bacteroides fragilis NCTC 9343 putative ABC transporter permease component YP_211095.1 1711286 D 272559 CDS YP_211096.1 60680952 3285492 1712599..1713843 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter permease BT1532 SWALL:AAO76639 (EMBL:AE016932) (417 aa) fasta scores: E(): 3.8e-65, 46.08% id in 421 aa; putative ABC transporter permease component 1713843 3285492 BF9343_1372 Bacteroides fragilis NCTC 9343 putative ABC transporter permease component YP_211096.1 1712599 D 272559 CDS YP_211097.1 60680953 3285243 1713939..1716551 1 NC_003228.3 C-terminus is similar to Methylococcus capsulatus copper-dependent regulator MmoS from codon 508 to codon 750 SWALL:AAP80772 (EMBL:AF525283) (1177 aa) fasta scores: E(): 3.5e-23, 38.84% id in 242 aa, and entire protein is similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1531 SWALL:Q8A7J3 (EMBL:AE016932) (869 aa) fasta scores: E(): 0, 66.59% id in 871 aa, and to Bacteroides thetaiotaomicron two-component system histidine kinase BT0994 SWALL:Q8A923 (EMBL:AE016930) (499 aa) fasta scores: E(): 2.8e-65, 40.56% id in 498 aa; putative two-component system sensor histidine kinase 1716551 3285243 BF9343_1373 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase YP_211097.1 1713939 D 272559 CDS YP_211098.1 60680954 3285125 1716792..1717091 1 NC_003228.3 no significant database matches; hypothetical protein 1717091 3285125 BF9343_1374 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211098.1 1716792 D 272559 CDS YP_211099.1 60680955 3285203 1717219..1718478 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein OprM precursor BT1530 SWALL:AAO76637 (EMBL:AE016932) (492 aa) fasta scores: E(): 1.9e-142, 77.58% id in 464 aa, and to Bacteroides thetaiotaomicron outer membrane protein TolC, putative BT0857 SWALL:AAO75964 (EMBL:AE016929) (490 aa) fasta scores: E(): 8.2e-60, 36.98% id in 465 aa, and to Bacteroides thetaiotaomicron outer membrane protein TolC, putative BT0671 SWALL:AAO75778 (EMBL:AE016928) (499 aa) fasta scores: E(): 1.3e-46, 31.46% id in 464 aa; putative outer membrane protein 1718478 3285203 BF9343_1375 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211099.1 1717219 D 272559 CDS YP_211100.1 60680956 3285210 1720021..1721313 1 NC_003228.3 C-terminus is similar to the C-terminus of Escherichia coli sensor protein ZraS or HydH or B4003 SWALL:ZRAS_ECOLI (SWALL:P14377) (465 aa) fasta scores: E(): 5.1e-10, 25.08% id in 295 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1528 SWALL:AAO76635 (EMBL:AE016932) (430 aa) fasta scores: E(): 3.3e-129, 79.06% id in 430 aa. This CDS overlaps 6 nt with the adjacent divergently transcribed CDS; putative two component sensor histidine kinase protein 1721313 3285210 BF9343_1377 Bacteroides fragilis NCTC 9343 putative two component sensor histidine kinase protein YP_211100.1 1720021 D 272559 CDS YP_211101.1 60680957 3285264 complement(1721302..1722948) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis aspartate decarboxylase AsdA SWALL:Q93CN2 (EMBL:AF404826) (548 aa) fasta scores: E(): 0, 100% id in 548 aa, and similar to Bacteroides thetaiotaomicron aspartate decarboxylase AsdA BT0735 SWALL:AAO75842 (EMBL:AE016929) (557 aa) fasta scores: E(): 2e-186, 83.88% id in 540 aa; putative aspartate decarboxylase 1722948 3285264 BF9343_1378 Bacteroides fragilis NCTC 9343 putative aspartate decarboxylase YP_211101.1 1721302 R 272559 CDS YP_211102.1 60680958 3285493 complement(1722990..1724687) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transport protein BT0736 SWALL:AAO75843 (EMBL:AE016929) (564 aa) fasta scores: E(): 3.2e-171, 80.53% id in 565 aa, and to previousle sequenced Bacteroides fragilis hypothetical 42.0 kDa protein SWALL:Q93CN3 (EMBL:AF404826) (392 aa) fasta scores: E(): 3.6e-135, 99.21% id in 380 aa, and to Bradyrhizobium japonicum hypothetical membrane protein BLL3476 SWALL:BAC48741 (EMBL:AP005947) (567 aa) fasta scores: E(): 1.5e-97, 49.73% id in 571 aa; putative transmembrane protein 1724687 3285493 BF9343_1379 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211102.1 1722990 R 272559 CDS YP_211103.1 60680959 3285408 1724840..1725808 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1521 SWALL:AAO76628 (EMBL:AE016932) (309 aa) fasta scores: E(): 1.9e-98, 77.74% id in 310 aa, and to Chlorobium tepidum hypothetical protein CT1155 SWALL:Q8KD99 (EMBL:AE012876) (354 aa) fasta scores: E(): 1.2e-10, 25.45% id in 330 aa, and to Methanobacterium thermoautotrophicum hypothetical protein Mth1261 SWALL:YC61_METTH (SWALL:O27329) (338 aa) fasta scores: E(): 1.1e-09, 21.69% id in 318 aa. Possible alternative start site at codon 13; putative transmembrane protein 1725808 3285408 BF9343_1380 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211103.1 1724840 D 272559 CDS YP_211104.1 60680960 3285494 1727125..1729476 1 NC_003228.3 Similar to Escherichia coli type I restriction enzyme EcoEI R protein HsdR or Hsr SWALL:T1RE_ECOLI (SWALL:Q47281) (813 aa) fasta scores: E(): 3.1e-105, 46.49% id in 813 aa, and to Anabaena sp. type I restriction-modification enzyme R subunit alr3473 SWALL:Q8YRH4 (EMBL:AP003593) (776 aa) fasta scores: E(): 1.2e-137, 49.23% id in 782 aa, and to Anabaena sp. type I restriction-modification enzyme R subunit alr3618 SWALL:Q8YR34 (EMBL:AP003593) (776 aa) fasta scores: E(): 1.6e-137, 49.36% id in 782 aa; putative type I restriction enzyme 1729476 3285494 BF9343_1382 Bacteroides fragilis NCTC 9343 putative type I restriction enzyme YP_211104.1 1727125 D 272559 CDS YP_211105.1 60680961 3285398 1729479..1730999 1 NC_003228.3 Similar to Escherichia coli type I restriction enzyme EcoEI M protein HsdM SWALL:T1ME_ECOLI (SWALL:Q47282) (490 aa) fasta scores: E(): 1.8e-73, 46.73% id in 505 aa, and to Mycoplasma penetrans type I restriction-modification system M subunit Mype8210 SWALL:Q8EUU7 (EMBL:AP004173) (490 aa) fasta scores: E(): 1.3e-108, 58.03% id in 498 aa, and to Streptococcus pneumoniae EcoE type I restriction modification enzyme M subunit HsdM or spr0449 SWALL:Q8DQX1 (EMBL:AE008425) (487 aa) fasta scores: E(): 2.1e-86, 55.22% id in 498 aa; putative type I RM modification enzyme 1730999 3285398 BF9343_1383 Bacteroides fragilis NCTC 9343 putative type I RM modification enzyme YP_211105.1 1729479 D 272559 CDS YP_211106.1 60680962 3285449 1731015..1732031 1 NC_003228.3 no significant database matches; putative DNA-binding protein 1732031 3285449 BF9343_1384 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_211106.1 1731015 D 272559 CDS YP_211107.1 60680963 3285188 1732024..1732470 1 NC_003228.3 no significant database matches; hypothetical protein 1732470 3285188 BF9343_1385 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211107.1 1732024 D 272559 CDS YP_211108.1 60680964 3285311 1732497..1733840 1 NC_003228.3 N-termimus is similar to the C-terminus of Salmonella typhimurium type I restriction enzyme StysJI specificity protein HsdS or STM4524 SWALL:T1S_SALTY (SWALL:P06187) (469 aa) fasta scores: E(): 5.4e-11, 26.83% id in 313 aa, and to Mycoplasma penetrans type I restriction-modification system S subunit Mype8200 SWALL:Q8EUU8 (EMBL:AP004173) (519 aa) fasta scores: E(): 2.3e-18, 38.47% id in 408 aa, and to Streptococcus pneumoniae type I restriction-modification system, S subunit sp0508 SWALL:Q97S80 (EMBL:AE007362) (522 aa) fasta scores: E(): 2.9e-17, 32.75% id in 403 aa. This CDS overlaps 42 nt with the downstream CDS; putative type I restriction enzyme specificity protein 1733840 3285311 BF9343_1386 Bacteroides fragilis NCTC 9343 putative type I restriction enzyme specificity protein YP_211108.1 1732497 D 272559 CDS YP_211109.1 60680965 18501135 1733797..1734171 1 NC_003228.3 Similar to codons 65-190 of previously sequenced Bacteroides fragilis transposase for insertion sequence element IS21-like TnpA SWALL:TNPA_BACFR (SWALL:Q45119) (582 aa) fasta scores: E(): 1e-15, 45.9% id in 122 aa, and to entire protein of previously sequenced Bacteroides fragilis TnpA2 SWALL:AAQ92936 (EMBL:AY375536) (124 aa) fasta scores: E(): 1.4e-45, 94.35% id in 124 aa. This CDS overlaps 42 nt with the upstream CDS; putative transposase 1734171 18501135 BF9343_1388 Bacteroides fragilis NCTC 9343 putative transposase YP_211109.1 1733797 D 272559 CDS YP_211110.1 60680966 18501136 1734232..1734549 1 NC_003228.3 no significant database matches; hypothetical protein 1734549 18501136 BF9343_1389 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211110.1 1734232 D 272559 CDS YP_211111.1 60680967 3285337 1734607..1734708 1 NC_003228.3 no significant database matches; hypothetical protein 1734708 3285337 BF9343_1390 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211111.1 1734607 D 272559 CDS YP_211112.1 60680968 3285275 1734787..1734960 1 NC_003228.3 no significant database matches; hypothetical protein 1734960 3285275 BF9343_1391 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211112.1 1734787 D 272559 CDS YP_211113.1 60680969 3285361 1734971..1735108 1 NC_003228.3 no significant database matches; hypothetical protein 1735108 3285361 BF9343_1392 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211113.1 1734971 D 272559 CDS YP_211114.1 60680970 3285433 1735345..1735842 1 NC_003228.3 C-terminus is similar to the N-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT4026 SWALL:Q8A0J5 (EMBL:AE016943) (332 aa) fasta scores: E(): 4e-09, 34.31% id in 102 aa; hypothetical protein 1735842 3285433 BF9343_1393 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211114.1 1735345 D 272559 CDS YP_211115.1 60680971 3285182 1735881..1736990 1 NC_003228.3 Similar to Bacteriophage bIL286 replication protein ORF16 SWALL:Q9AZV5 (EMBL:AF323669) (279 aa) fasta scores: E(): 3.7e-06, 35.93% id in 128 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4026 SWALL:AAO79131 (EMBL:AE016943) (332 aa) fasta scores: E(): 2.1e-17, 32.52% id in 369 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2028 SWALL:AAO77135 (EMBL:AE016934) (335 aa) fasta scores: E(): 1.4e-07, 33.05% id in 118 aa; putative bacteriophage-related replication protein 1736990 3285182 BF9343_1394 Bacteroides fragilis NCTC 9343 putative bacteriophage-related replication protein YP_211115.1 1735881 D 272559 CDS YP_211116.1 60680972 3285159 1737010..1737567 1 NC_003228.3 no significant database matches; putative transmembrane protein 1737567 3285159 BF9343_1395 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211116.1 1737010 D 272559 CDS YP_211117.1 60680973 3285519 1737593..1738504 1 NC_003228.3 Similar to Bacteroides uniformis primase Prmn1 SWALL:Q9KI94 (EMBL:AF238307) (318 aa) fasta scores: E(): 1.4e-33, 37% id in 300 aa, and to previously sequenced Bacteroides fragilis DNA primase SWALL:Q8RM69 (EMBL:AY053505) (321 aa) fasta scores: E(): 2.7e-29, 35.71% id in 294 aa, and to previously sequenced Bacteroides fragilis Prmn2 SWALL:Q9KHQ2 (EMBL:AF251288) (318 aa) fasta scores: E(): 5.8e-27, 33% id in 300 aa; putative DNA primase 1738504 3285519 BF9343_1396 Bacteroides fragilis NCTC 9343 putative DNA primase YP_211117.1 1737593 D 272559 CDS YP_211118.1 60680974 3285498 1738565..1739293 1 NC_003228.3 Similar to Clostridium acetobutylicum hypothetical protein Cac1986 CAC1986 SWALL:Q97HM4 (EMBL:AE007703) (230 aa) fasta scores: E(): 1.2e-05, 26.16% id in 237 aa; hypothetical protein 1739293 3285498 BF9343_1397 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211118.1 1738565 D 272559 CDS YP_211119.1 60680975 3285267 1739425..1740057 1 NC_003228.3 no significant database matches; hypothetical protein 1740057 3285267 BF9343_1398 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211119.1 1739425 D 272559 CDS YP_211120.1 60680976 3285157 1740065..1740412 1 NC_003228.3 no significant database matches; hypothetical protein 1740412 3285157 BF9343_1399 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211120.1 1740065 D 272559 CDS YP_211121.1 60680977 3285480 1740409..1740696 1 NC_003228.3 no significant database matches; hypothetical protein 1740696 3285480 BF9343_1400 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211121.1 1740409 D 272559 CDS YP_211122.1 60680978 3285163 1740689..1740961 1 NC_003228.3 no significant database matches; hypothetical protein 1740961 3285163 BF9343_1401 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211122.1 1740689 D 272559 CDS YP_211123.1 60680979 3285276 1741042..1741221 1 NC_003228.3 no significant database matches; hypothetical protein 1741221 3285276 BF9343_1402 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211123.1 1741042 D 272559 CDS YP_211124.1 60680980 3285405 1741263..1741781 1 NC_003228.3 no significant database matches; hypothetical protein 1741781 3285405 BF9343_1403 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211124.1 1741263 D 272559 CDS YP_211125.1 60680981 3285376 1741992..1742285 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1365 SWALL:Q8A809 (EMBL:AE016931) (124 aa) fasta scores: E(): 4e-17, 48.27% id in 87 aa; hypothetical protein 1742285 3285376 BF9343_1404 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211125.1 1741992 D 272559 CDS YP_211126.1 60680982 3285140 1742282..1742824 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1066 SWALL:AAO76173 (EMBL:AE016930) (189 aa) fasta scores: E(): 2e-21, 37.96% id in 187 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4234 SWALL:AAO79339 (EMBL:AE016944) (189 aa) fasta scores: E(): 1.3e-18, 33.15% id in 190 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1451 SWALL:AAO76558 (EMBL:AE016931) (195 aa) fasta scores: E(): 1.3e-16, 33.67% id in 193 aa; hypothetical protein 1742824 3285140 BF9343_1405 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211126.1 1742282 D 272559 CDS YP_211127.1 60680983 3285482 1742836..1744899 1 NC_003228.3 C-terminus is similar to the C-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT2659 SWALL:AAO77766 (EMBL:AE016936) (446 aa) fasta scores: E(): 9e-08, 24.34% id in 304 aa, and C-terminus is similar to the C-terminus of Porphyromonas gingivalis 60kda protein SWALL:O07074 (EMBL:AB004560) (490 aa) fasta scores: E(): 1.9e-06, 23.77% id in 286 aa; hypothetical protein 1744899 3285482 BF9343_1406 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211127.1 1742836 D 272559 CDS YP_211128.1 60680984 3285412 1744886..1745767 1 NC_003228.3 no significant database matches; hypothetical protein 1745767 3285412 BF9343_1407 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211128.1 1744886 D 272559 CDS YP_211129.1 60680985 3285151 1745785..1746747 1 NC_003228.3 no significant database matches; hypothetical protein 1746747 3285151 BF9343_1408 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211129.1 1745785 D 272559 CDS YP_211130.1 60680986 3285274 1746798..1748402 1 NC_003228.3 no significant database matches; hypothetical protein 1748402 3285274 BF9343_1409 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211130.1 1746798 D 272559 CDS YP_211131.1 60680987 3285121 1748421..1749218 1 NC_003228.3 no significant database matches; hypothetical protein 1749218 3285121 BF9343_1410 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211131.1 1748421 D 272559 CDS YP_211132.1 60680988 3285153 1749233..1749541 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein p5482_09 SWALL:AAO45307 (EMBL:AY171301) (95 aa) fasta scores: E(): 9.7e-07, 36.7% id in 79 aa; putative transmembrane protein 1749541 3285153 BF9343_1411 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211132.1 1749233 D 272559 CDS YP_211133.1 60680989 3285380 1749538..1749879 1 NC_003228.3 no significant database matches; putative transmembrane protein 1749879 3285380 BF9343_1412 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211133.1 1749538 D 272559 CDS YP_211134.1 60680990 3285465 1749908..1752268 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conjugal transfer protein TraG SWALL:Q9F6U2 (EMBL:AF289050) (838 aa) fasta scores: E(): 1e-20, 26.69% id in 798 aa, and to Bacteroides thetaiotaomicron TraG-like p5482_11 SWALL:Q8ABY7 (EMBL:AY171301) (814 aa) fasta scores: E(): 1.5e-138, 44.14% id in 786 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0093 SWALL:Q8ABL7 (EMBL:AE016926) (834 aa) fasta scores: E(): 9e-24, 25.87% id in 796 aa; putative conserved protein found in conjugate transposon 1752268 3285465 BF9343_1413 Bacteroides fragilis NCTC 9343 putative conserved protein found in conjugate transposon YP_211134.1 1749908 D 272559 CDS YP_211135.1 60680991 3285138 1752281..1752802 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TraI-like p5482_12 SWALL:AAO45310 (EMBL:AY171301) (189 aa) fasta scores: E(): 7.2e-06, 28.02% id in 182 aa; putative conserved TraI-like protein found in conjugate transposon 1752802 3285138 BF9343_1414 Bacteroides fragilis NCTC 9343 putative conserved TraI-like protein found in conjugate transposon YP_211135.1 1752281 D 272559 CDS YP_211136.1 60680992 3285135 1752859..1753581 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein p5482_13 SWALL:AAO45311 (EMBL:AY171301) (257 aa) fasta scores: E(): 4.7e-10, 26.27% id in 236 aa; putative transmembrane protein 1753581 3285135 BF9343_1415 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211136.1 1752859 D 272559 CDS YP_211137.1 60680993 3285537 1753601..1754242 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein p5482_14 SWALL:AAO45312 (EMBL:AY171301) (214 aa) fasta scores: E(): 9e-26, 40.19% id in 204 aa; putative transmembrane protein 1754242 3285537 BF9343_1416 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211137.1 1753601 D 272559 CDS YP_211138.1 60680994 3285139 1754239..1755219 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TraM-like p5482_15 SWALL:AAO45313 (EMBL:AY171301) (296 aa) fasta scores: E(): 3e-11, 30.76% id in 325 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2596 SWALL:AAO77703 (EMBL:AE016936) (432 aa) fasta scores: E(): 1.4e-11, 27.53% id in 316 aa; conserved hypothetical TraM-like protein found in conjugate transposon 1755219 3285139 BF9343_1417 Bacteroides fragilis NCTC 9343 conserved hypothetical TraM-like protein found in conjugate transposon YP_211138.1 1754239 D 272559 CDS YP_211139.1 60680995 3285539 1755413..1755556 1 NC_003228.3 no significant database matches; hypothetical protein 1755556 3285539 BF9343_1418 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211139.1 1755413 D 272559 CDS YP_211140.1 60680996 3285536 complement(1755676..1756212) 1 NC_003228.3 no significant database matches; putative transmembrane protein 1756212 3285536 BF9343_1419 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211140.1 1755676 R 272559 CDS YP_211141.1 60680997 3285397 1756227..1757381 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TraN-like p5482_16 SWALL:AAO45314 (EMBL:AY171301) (365 aa) fasta scores: E(): 1.6e-38, 33.69% id in 365 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2595 SWALL:AAO77702 (EMBL:AE016936) (309 aa) fasta scores: E(): 1.5e-09, 33.59% id in 259 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT4780 SWALL:AAO79885 (EMBL:AE016946) (299 aa) fasta scores: E(): 5.8e-08, 26.56% id in 271 aa; conserved hypothetical TraN-like protein found in conjugate transposon 1757381 3285397 BF9343_1420 Bacteroides fragilis NCTC 9343 conserved hypothetical TraN-like protein found in conjugate transposon YP_211141.1 1756227 D 272559 CDS YP_211142.1 60680998 3285340 1757378..1757929 1 NC_003228.3 C-terminus is similar to Neisseria meningitidis conserved hypothetical protein, possible peptidase from codon 277 to codon 390 of NMA2172 SWALL:Q9JSR5 (EMBL:AL162758) (430 aa) fasta scores: E(): 1.9e-20, 56.63% id in 113 aa, and C-terminus is similar to Neisseria meningitidis hypothetical protein from codon 277 to codon 390 of NMB0315 SWALL:Q9K163 (EMBL:AE002388) (430 aa) fasta scores: E(): 1.9e-20, 56.63% id in 113 aa, and N-terminus is similar the C-terminus of Thermoanaerobacter tengcongensis membrane proteins related to metalloendopeptidases NlpD4 or TTE1975 SWALL:Q8R8M0 (EMBL:AE013149) (389 aa) fasta scores: E(): 4.9e-19, 44.02% id in 159 aa; putative peptidase 1757929 3285340 BF9343_1421 Bacteroides fragilis NCTC 9343 putative peptidase YP_211142.1 1757378 D 272559 CDS YP_211143.1 60680999 3285529 1757913..1758254 1 NC_003228.3 no significant database matches; hypothetical protein 1758254 3285529 BF9343_1422 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211143.1 1757913 D 272559 CDS YP_211144.1 60681000 3285117 1758251..1758559 1 NC_003228.3 no significant database matches; putative DNA-binding protein 1758559 3285117 BF9343_1423 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_211144.1 1758251 D 272559 CDS YP_211145.1 60681001 3285532 1758574..1760157 1 NC_003228.3 no significant database matches; hypothetical protein 1760157 3285532 BF9343_1424 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211145.1 1758574 D 272559 CDS YP_211146.1 60681002 3285533 complement(1760393..1762303) 1 NC_003228.3 no significant database matches; hypothetical protein 1762303 3285533 BF9343_1425 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211146.1 1760393 R 272559 CDS YP_211147.1 60681003 3285530 complement(1762307..1762585) 1 NC_003228.3 no significant database matches; hypothetical protein 1762585 3285530 BF9343_1426 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211147.1 1762307 R 272559 CDS YP_211148.1 60681004 3285531 complement(1762601..1763398) 1 NC_003228.3 Similar to Bacillus subtilis sporulation initiation inhibitor protein Soj or BSU40970 SWALL:SOJ_BACSU (SWALL:P37522) (253 aa) fasta scores: E(): 8.5e-25, 36.36% id in 253 aa, and to Thermoanaerobacter tengcongensis ATPases involved in chromosome partitioning Soj or TTE2791 SWALL:Q8R6L2 (EMBL:AE013216) (255 aa) fasta scores: E(): 2e-26, 37.15% id in 253 aa, and to Oceanobacillus iheyensis sporulation initiation inhibitor Soj or ob3487 SWALL:Q8EKU6 (EMBL:AP004605) (257 aa) fasta scores: E(): 3.7e-25, 35.47% id in 265 aa; putative protein involved in partitioning 1763398 3285531 BF9343_1427 Bacteroides fragilis NCTC 9343 putative protein involved in partitioning YP_211148.1 1762601 R 272559 CDS YP_211149.1 60681005 3285528 1763896..1764138 1 NC_003228.3 no significant database matches; hypothetical protein 1764138 3285528 BF9343_1428 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211149.1 1763896 D 272559 CDS YP_211150.1 60681006 3285517 1764221..1765069 1 NC_003228.3 Similar to Neisseria meningitidis hypothetical protein NMA1821 or rth52 SWALL:Q9JR49 (EMBL:AL162757) (279 aa) fasta scores: E(): 1.3e-32, 38.84% id in 278 aa, and to Haemophilus influenzae hypothetical protein Hi1523 SWALL:YF23_HAEIN (SWALL:P44243) (296 aa) fasta scores: E(): 1.8e-30, 37.45% id in 283 aa; hypothetical protein 1765069 3285517 BF9343_1429 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211150.1 1764221 D 272559 CDS YP_211151.1 60681007 3285527 1765180..1765341 1 NC_003228.3 no significant database matches; hypothetical protein 1765341 3285527 BF9343_1430 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211151.1 1765180 D 272559 CDS YP_211152.1 60681008 3285515 complement(1765459..1765644) 1 NC_003228.3 no significant database matches; hypothetical protein 1765644 3285515 BF9343_1431 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211152.1 1765459 R 272559 CDS YP_211153.1 60681009 3285516 1765682..1765825 1 NC_003228.3 no significant database matches; hypothetical protein 1765825 3285516 BF9343_1432 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211153.1 1765682 D 272559 CDS YP_211154.1 60681010 3289278 1766098..1767093 1 NC_003228.3 Similar to Clostridium perfringens choloylglycine hydrolase Cbh or CPE0709 SWALL:CBH_CLOPE (SWALL:P54965) (329 aa) fasta scores: E(): 9.1e-28, 32.72% id in 327 aa, and to Brucella melitensis choloylglycine hydrolase Bmei0543 SWALL:Q8YIA2 (EMBL:AE009496) (367 aa) fasta scores: E(): 1.6e-35, 35.98% id in 314 aa, and to Brucella suis choloylglycine hydrolase family protein br1468 SWALL:Q8FZL2 (EMBL:AE014442) (333 aa) fasta scores: E(): 3e-35, 35.66% id in 314 aa; putative choloylglycine hydrolase 1767093 cbh 3289278 cbh Bacteroides fragilis NCTC 9343 putative choloylglycine hydrolase YP_211154.1 1766098 D 272559 CDS YP_211155.1 60681011 3285521 complement(1767406..1767795) 1 NC_003228.3 no significant database matches; hypothetical protein 1767795 3285521 BF9343_1434 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211155.1 1767406 R 272559 CDS YP_211156.1 60681012 3285514 complement(1768167..1769735) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative xylanase BT3043 SWALL:AAO78149 (EMBL:AE016938) (528 aa) fasta scores: E(): 5e-57, 35.06% id in 502 aa; hypothetical protein 1769735 3285514 BF9343_1435 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211156.1 1768167 R 272559 CDS YP_211157.1 60681013 3286442 complement(1769824..1771461) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2460 SWALL:AAO77567 (EMBL:AE016936) (572 aa) fasta scores: E(): 1.2e-19, 29.57% id in 585 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2195 SWALL:AAO77302 (EMBL:AE016935) (580 aa) fasta scores: E(): 1.9e-19, 30.36% id in 573 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4089 SWALL:AAO79194 (EMBL:AE016943) (598 aa) fasta scores: E(): 3.9e-18, 29.54% id in 616 aa; putative outer membrane protein 1771461 3286442 BF9343_1436 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211157.1 1769824 R 272559 CDS YP_211158.1 60681014 3285534 complement(1771472..1774855) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 1.9e-48, 29.74% id in 1180 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2461 SWALL:AAO77568 (EMBL:AE016936) (1134 aa) fasta scores: E(): 3.4e-84, 33.04% id in 1168 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2196 SWALL:AAO77303 (EMBL:AE016935) (1120 aa) fasta scores: E(): 7.9e-75, 30.55% id in 1152 aa; putative outer membrane protein 1774855 3285534 BF9343_1437 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211158.1 1771472 R 272559 CDS YP_211159.1 60681015 3286444 complement(1774999..1775955) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 8e-21, 32.26% id in 313 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2462 SWALL:AAO77569 (EMBL:AE016936) (311 aa) fasta scores: E(): 3.9e-41, 38.29% id in 316 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2561 SWALL:AAO77668 (EMBL:AE016936) (312 aa) fasta scores: E(): 5.7e-35, 36.36% id in 319 aa; putative anti-sigma factor 1775955 3286444 BF9343_1438 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_211159.1 1774999 R 272559 CDS YP_211160.1 60681016 3286441 complement(1776039..1776626) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 0.00062, 26.13% id in 176 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT2463 SWALL:AAO77570 (EMBL:AE016936) (189 aa) fasta scores: E(): 2.1e-22, 39.2% id in 176 aa; putative RNA polymerase ECF-type sigma factor 1776626 3286441 BF9343_1439 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_211160.1 1776039 R 272559 CDS YP_211161.1 60681017 3286449 1777187..1777591 1 NC_003228.3 no significant database matches; hypothetical protein 1777591 3286449 BF9343_1440 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211161.1 1777187 D 272559 CDS YP_211162.1 60681018 3286446 1777597..1778913 1 NC_003228.3 Similar to Clostridium perfringens hypothetical protein CPE0655 SWALL:Q8XMN3 (EMBL:AP003187) (261 aa) fasta scores: E(): 2.2e-09, 27.74% id in 173 aa; hypothetical protein 1778913 3286446 BF9343_1441 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211162.1 1777597 D 272559 CDS YP_211163.1 60681019 3286453 1779001..1782666 1 NC_003228.3 no significant database matches; hypothetical protein 1782666 3286453 BF9343_1442 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211163.1 1779001 D 272559 CDS YP_211164.1 60681020 3286451 1782677..1783030 1 NC_003228.3 no significant database matches; hypothetical protein 1783030 3286451 BF9343_1443 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211164.1 1782677 D 272559 CDS YP_211165.1 60681021 3289249 1783122..1784726 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis mobilization protein C mobC SWALL:Q9ZF54 (EMBL:AF118243) (534 aa) fasta scores: E(): 2e-211, 98.31% id in 534 aa, and to Bacteroides thetaiotaomicron mobilization protein C p5482_08 SWALL:AAO45306 (EMBL:AY171301) (479 aa) fasta scores: E(): 1.8e-88, 50.32% id in 459 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0102 SWALL:AAO75209 (EMBL:AE016926) (669 aa) fasta scores: E(): 2e-16, 24.22% id in 450 aa; mobilisation protein C 1784726 mobC 3289249 mobC Bacteroides fragilis NCTC 9343 mobilisation protein C YP_211165.1 1783122 D 272559 CDS YP_211166.1 60681022 3286252 complement(1784743..1785693) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis mobilization protein B mobB SWALL:Q9ZF55 (EMBL:AF118242) (316 aa) fasta scores: E(): 2.6e-120, 97.46% id in 316 aa, and to previously sequenced Bacteroides fragilis hypothetical 15.7 kDa protein SWALL:Q9R877 (EMBL:AF104909) (132 aa) fasta scores: E(): 2.6e-45, 98.48% id in 132 aa, and to Bacteroides thetaiotaomicron mobilization protein B p5482_07 SWALL:Q8ABZ1 (EMBL:AY171301) (749 aa) fasta scores: E(): 8.2e-31, 47.45% id in 236 aa; mobilisation protein B 1785693 mobB 3286252 mobB Bacteroides fragilis NCTC 9343 mobilisation protein B YP_211166.1 1784743 R 272559 CDS YP_211167.1 60681023 3289228 complement(1785683..1786225) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis mobilization protein A MobA SWALL:Q9ZF56 (EMBL:AF118241) (180 aa) fasta scores: E(): 8.6e-57, 97.77% id in 180 aa; mobilisation protein A 1786225 mobA 3289228 mobA Bacteroides fragilis NCTC 9343 mobilisation protein A YP_211167.1 1785683 R 272559 CDS YP_211168.1 60681024 3286422 complement(1786511..1786861) 1 NC_003228.3 no significant database matches; hypothetical protein 1786861 3286422 BF9343_1447 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211168.1 1786511 R 272559 CDS YP_211169.1 60681025 3286425 1786839..1787783 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2465 SWALL:AAO77572 (EMBL:AE016936) (304 aa) fasta scores: E(): 8.5e-65, 55.01% id in 309 aa; hypothetical protein 1787783 3286425 BF9343_1448 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211169.1 1786839 D 272559 CDS YP_211170.1 60681026 3285520 1787780..1788025 1 NC_003228.3 no significant database matches; hypothetical protein 1788025 3285520 BF9343_1449 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211170.1 1787780 D 272559 CDS YP_211171.1 60681027 3286429 1788291..1788521 1 NC_003228.3 no significant database matches; hypothetical protein 1788521 3286429 BF9343_1450 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211171.1 1788291 D 272559 CDS YP_211172.1 60681028 3286428 1788588..1789295 1 NC_003228.3 Similar to C-terminal 200 amino acids of Bacteroides thetaiotaomicron BexA, putative cation effux pump BT1900 SWALL:AAO77007 (EMBL:AE016933) (440 aa) fasta scores: E(): 1.3e-49, 58.07% id in 229 aa, and to entire Bacteroides thetaiotaomicron BexA, membrane protein BT1600 SWALL:AAO76707 (EMBL:AE016932) (257 aa) fasta scores: E(): 4.9e-25, 36.86% id in 236 aa; putative cation efflux protein 1789295 3286428 BF9343_1451 Bacteroides fragilis NCTC 9343 putative cation efflux protein YP_211172.1 1788588 D 272559 CDS YP_211173.1 60681029 3288305 1789308..1789925 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis SatG SWALL:Q9F5V4 (EMBL:AF303352) (146 aa) fasta scores: E(): 2e-55, 98.58% id in 141 aa, and to Bacteroides thetaiotaomicron acetyltransferase BT2384 SWALL:AAO77491 (EMBL:AE016935) (208 aa) fasta scores: E(): 2.1e-62, 72.68% id in 205 aa; putative acetyltransferase 1789925 satG 3288305 satG Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_211173.1 1789308 D 272559 CDS YP_211174.1 60681030 3288936 1789931..1791202 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis RteA SWALL:Q9F5V3 (EMBL:AF303352) (423 aa) fasta scores: E(): 5.3e-142, 96.45% id in 423 aa, and to Bacteroides thetaiotaomicron RteA protein SWALL:Q00935 (EMBL:M81439) (772 aa) fasta scores: E(): 2.7e-72, 64.39% id in 337 aa; putative two component system sensor kinase 1791202 rteA 3288936 rteA Bacteroides fragilis NCTC 9343 putative two component system sensor kinase YP_211174.1 1789931 D 272559 CDS YP_211175.1 60681031 3288930 1791195..1792517 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis RteB SWALL:Q9F5V2 (EMBL:AF303352) (440 aa) fasta scores: E(): 4.5e-160, 98.86% id in 440 aa, and to Bacteroides thetaiotaomicron RteB protein SWALL:Q00936 (EMBL:M81439) (440 aa) fasta scores: E(): 5.8e-141, 85.87% id in 439 aa; putative two-component system response regulator 1792517 rteB 3288930 rteB Bacteroides fragilis NCTC 9343 putative two-component system response regulator YP_211175.1 1791195 D 272559 CDS YP_211176.1 60681032 3286435 complement(1792700..1793365) 1 NC_003228.3 no significant database matches; hypothetical protein 1793365 3286435 BF9343_1455 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211176.1 1792700 R 272559 CDS YP_211177.1 60681033 3286431 complement(1793365..1794351) 1 NC_003228.3 Similar to Xanthomonas axonopodis hypothetical protein Xac4266 SWALL:Q8PES4 (EMBL:AE012079) (210 aa) fasta scores: E(): 3.3e-15, 35.54% id in 166 aa, and to Xylella fastidiosa conserved hypothetical protein PD0579 SWALL:Q87DV1 (EMBL:AE012555) (366 aa) fasta scores: E(): 5.1e-12, 30.03% id in 333 aa; hypothetical protein 1794351 3286431 BF9343_1456 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211177.1 1793365 R 272559 CDS YP_211178.1 60681034 3286407 complement(1794681..1795403) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis Int SWALL:Q9EU84 (EMBL:AF303352) (208 aa) fasta scores: E(): 4.8e-75, 91.7% id in 205 aa; putative integrase 1795403 3286407 BF9343_1457 Bacteroides fragilis NCTC 9343 putative integrase YP_211178.1 1794681 R 272559 CDS YP_211179.1 60681035 3287987 1795457..1797103 1 NC_003228.3 Identical, but truncated 35 residues at the N-terminus to previously sequenced Bacteroides fragilis transposase for insertion sequence element IS21-like TnpA SWALL:TNPA_BACFR (SWALL:Q45119) (582 aa) fasta scores: E(): 0, 100% id in 548 aa, and to Bacteroides fragilis TnpA SWALL:AAG17460 (EMBL:AF303352) (582 aa) fasta scores: E(): 0, 100% id in 548 aa, and to Bacillus halodurans transposase BH3965 SWALL:Q9K5X2 (EMBL:AP001520) (514 aa) fasta scores: E(): 1.1e-62, 36.27% id in 488 aa; putative transposase for insertion sequence element IS21-like 1797103 tnpA 3287987 tnpA Bacteroides fragilis NCTC 9343 putative transposase for insertion sequence element IS21-like YP_211179.1 1795457 D 272559 CDS YP_211180.1 60681036 3287625 1797072..1797863 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis insertion sequence IS21-like putative ATP-binding protein TnpB SWALL:ISTB_BACFR (SWALL:Q45120) (263 aa) fasta scores: E(): 2.2e-95, 100% id in 263 aa, and to previously sequenced Bacteroides fragilis TnpB SWALL:AAG17461 (EMBL:AF303352) (263 aa) fasta scores: E(): 2.2e-95, 100% id in 263 aa, and similar to Bacillus halodurans transposase BH3966 SWALL:Q9K5X1 (EMBL:AP001520) (254 aa) fasta scores: E(): 4.9e-28, 40.31% id in 253 aa; insertion sequence IS21-like putative ATP-binding protein 1797863 tnpB 3287625 tnpB Bacteroides fragilis NCTC 9343 insertion sequence IS21-like putative ATP-binding protein YP_211180.1 1797072 D 272559 CDS YP_211181.1 60681037 3286437 1797901..1798302 1 NC_003228.3 no significant database matches; hypothetical protein 1798302 3286437 BF9343_1460 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211181.1 1797901 D 272559 CDS YP_211182.1 60681038 3286413 complement(1798285..1799658) 1 NC_003228.3 Similar to Escherichia coli type I restriction enzyme EcoBI specificity protein HsdS or Hss SWALL:T1SB_ECOLI (SWALL:P06990) (474 aa) fasta scores: E(): 2.2e-06, 22.97% id in 370 aa, and to Streptococcus pneumoniae type I restriction-modification system, S subunit sp0508 SWALL:Q97S80 (EMBL:AE007362) (522 aa) fasta scores: E(): 1.8e-28, 29.18% id in 466 aa, and to Mycoplasma penetrans type I restriction-modification system S subunit Mype8200 SWALL:Q8EUU8 (EMBL:AP004173) (519 aa) fasta scores: E(): 2.5e-27, 30.31% id in 475 aa; putative type I restriction-modification specificity protein 1799658 3286413 BF9343_1461 Bacteroides fragilis NCTC 9343 putative type I restriction-modification specificity protein YP_211182.1 1798285 R 272559 CDS YP_211183.1 60681039 3286403 1799717..1800523 1 NC_003228.3 Similar to Mycoplasma penetrans integrase MYPE8180 SWALL:Q8EUV0 (EMBL:AP004173) (272 aa) fasta scores: E(): 8.9e-67, 66.04% id in 268 aa, and to Bacteroides thetaiotaomicron integrase BT4521 SWALL:AAO79626 (EMBL:AE016945) (267 aa) fasta scores: E(): 4.9e-66, 63.11% id in 263 aa, and to Streptococcus pneumoniae integrase/recombinase XerD or SPR0447 SWALL:Q8DQX3 (EMBL:AE008425) (265 aa) fasta scores: E(): 2.3e-63, 63.11% id in 263 aa; putative phage integrase/recombinase 1800523 3286403 BF9343_1462 Bacteroides fragilis NCTC 9343 putative phage integrase/recombinase YP_211183.1 1799717 D 272559 CDS YP_211184.1 60681040 3286416 1800648..1800782 1 NC_003228.3 no significant database matches; hypothetical protein 1800782 3286416 BF9343_1463 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211184.1 1800648 D 272559 CDS YP_211185.1 60681041 3286414 complement(1800966..1801529) 1 NC_003228.3 no significant database matches; hypothetical protein 1801529 3286414 BF9343_1464 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211185.1 1800966 R 272559 CDS YP_211186.1 60681042 3286420 complement(1801548..1802183) 1 NC_003228.3 no significant database matches; hypothetical protein 1802183 3286420 BF9343_1465 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211186.1 1801548 R 272559 CDS YP_211187.1 60681043 3286417 complement(1802180..1803445) 1 NC_003228.3 no significant database matches; hypothetical protein 1803445 3286417 BF9343_1466 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211187.1 1802180 R 272559 CDS YP_211188.1 60681044 3286389 complement(1803501..1803707) 1 NC_003228.3 no significant database matches; hypothetical protein 1803707 3286389 BF9343_1467 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211188.1 1803501 R 272559 CDS YP_211189.1 60681045 3286396 complement(1803918..1804280) 1 NC_003228.3 no significant database matches; hypothetical protein 1804280 3286396 BF9343_1468 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211189.1 1803918 R 272559 CDS YP_211190.1 60681046 3286400 complement(1804751..1805701) 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical 30.9 kDa protein SWALL:Q8VST0 (EMBL:AF366394) (277 aa) fasta scores: E(): 6.4e-40, 78.28% id in 304 aa, and to Bacteroides fragilis hypothetical 30.1 kDa protein SWALL:Q8VU11 (EMBL:AF285774) (267 aa) fasta scores: E(): 5.4e-32, 59.21% id in 304 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0592 SWALL:AAO75699 (EMBL:AE016928) (261 aa) fasta scores: E(): 2.2e-22, 41.94% id in 298 aa; hypothetical protein 1805701 3286400 BF9343_1469 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211190.1 1804751 R 272559 CDS YP_211191.1 60681047 3286397 complement(1805817..1806164) 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical 13.9 kDa protein SWALL:Q8VU10 (EMBL:AF285774) (115 aa) fasta scores: E(): 2.7e-29, 60% id in 115 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0593 SWALL:AAO75700 (EMBL:AE016928) (121 aa) fasta scores: E(): 4.2e-21, 46.28% id in 121 aa; hypothetical protein 1806164 3286397 BF9343_1470 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211191.1 1805817 R 272559 CDS YP_211192.1 60681048 3286406 complement(1806235..1806465) 1 NC_003228.3 no significant database matches; hypothetical protein 1806465 3286406 BF9343_1471 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211192.1 1806235 R 272559 CDS YP_211193.1 60681049 3286405 1806470..1806613 1 NC_003228.3 no significant database matches; hypothetical protein 1806613 3286405 BF9343_1472 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211193.1 1806470 D 272559 CDS YP_211194.1 60681050 3286070 1807211..1807810 1 NC_003228.3 Similar to Bacteroides fragilis putative transcriptional regulator UpdY SWALL:Q8VSS9 (EMBL:AF366394) (179 aa) fasta scores: E(): 7.6e-45, 63.09% id in 168 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT0462 SWALL:AAO75569 (EMBL:AE016927) (184 aa) fasta scores: E(): 7.9e-14, 36.07% id in 158 aa, and to Bacteroides fragilis UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 6.1e-12, 31.09% id in 164 aa; putative transcriptional regulator 1807810 upfY 3286070 upfY Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_211194.1 1807211 D 272559 CDS YP_211195.1 60681051 3288315 1807822..1808304 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical 18.5 kDa protein upbZ SWALL:Q9F768 (EMBL:AF285774) (161 aa) fasta scores: E(): 5.6e-38, 59.74% id in 159 aa, and to Bacteroides fragilis putative transcriptional regulator UpdZ SWALL:Q8VSS8 (EMBL:AF366394) (160 aa) fasta scores: E(): 3.9e-35, 59.37% id in 160 aa, and to Bacteroides fragilis UpaZ SWALL:Q93QW5 (EMBL:AF189282) (157 aa) fasta scores: E(): 1.1e-34, 60.64% id in 155 aa; putative transcriptional regulator 1808304 upfZ 3288315 upfZ Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_211195.1 1807822 D 272559 CDS YP_211196.1 60681052 3287823 1808337..1809227 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis glucose-1-phosphate thymidyl transferase RmlA SWALL:Q9XDK6 (EMBL:AF048749) (295 aa) fasta scores: E(): 3.4e-106, 91.78% id in 292 aa, and to Bacteroides thetaiotaomicron glucose-1-phosphate thymidylyltransferase BT0463 SWALL:AAO75570 (EMBL:AE016927) (295 aa) fasta scores: E(): 2.5e-106, 91.09% id in 292 aa, and to previously sequenced Bacteroides fragilis glucose-1-phosphate thymidyltransferase RmlA SWALL:Q9RGK4 (EMBL:AF125164) (294 aa) fasta scores: E(): 6e-104, 89.38% id in 292 aa; putative glucose-1-phosphate thymidyl transferase 1809227 rmlA1 3287823 rmlA1 Bacteroides fragilis NCTC 9343 putative glucose-1-phosphate thymidyl transferase YP_211196.1 1808337 D 272559 CDS YP_211197.1 60681053 3289321 1809227..1809802 1 NC_003228.3 Similar to Bacteroides fragilis dTDP-6-deoxy-D-glucose-3,5 epimerase RmlC SWALL:Q9XDK5 (EMBL:AF048749) (182 aa) fasta scores: E(): 7.3e-62, 83.52% id in 176 aa, and to Bacteroides thetaiotaomicron dTDP-4-dehydrorhamnose 3,5-epimerase BT0464 SWALL:AAO75571 (EMBL:AE016927) (189 aa) fasta scores: E(): 8.6e-63, 78.8% id in 184 aa, and to Bacteroides thetaiotaomicron dTDP-4-dehydrorhamnose 3,5-epimerase BT1338 SWALL:AAO76445 (EMBL:AE016931) (182 aa) fasta scores: E(): 1.2e-61, 80.22% id in 182 aa; putative dTDP-4-dehydrorhamnose 3,5 epimerase 1809802 rmlC2 3289321 rmlC2 Bacteroides fragilis NCTC 9343 putative dTDP-4-dehydrorhamnose 3,5 epimerase YP_211197.1 1809227 D 272559 CDS YP_211198.1 60681054 3286379 1809811..1810212 1 NC_003228.3 no significant database matches; hypothetical protein 1810212 3286379 BF9343_1477 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211198.1 1809811 D 272559 CDS YP_211199.1 60681055 3286374 1810232..1811548 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative UDP-glucose dehydrogenase WcfY SWALL:Q9F758 (EMBL:AF285774) (440 aa) fasta scores: E(): 3.9e-115, 67.89% id in 436 aa, and to Bacteroides thetaiotaomicron UDP-glucose 6-dehydrogenase BT0829 SWALL:AAO75936 (EMBL:AE016929) (437 aa) fasta scores: E(): 1e-115, 68.42% id in 437 aa, and to Bacteroides thetaiotaomicron UDP-glucose 6-dehydrogenase BT1341 SWALL:AAO76448 (EMBL:AE016931) (437 aa) fasta scores: E(): 1.3e-113, 68.65% id in 437 aa; putative nucleotide-sugar dehydrogenase 1811548 3286374 BF9343_1478 Bacteroides fragilis NCTC 9343 putative nucleotide-sugar dehydrogenase YP_211199.1 1810232 D 272559 CDS YP_211200.1 60681056 3286380 1811555..1812499 1 NC_003228.3 Similar to Pseudomonas aeruginosa protein similar to NAD dependent epimerase/dehydratase family SWALL:Q8KH68 (EMBL:AF498418) (318 aa) fasta scores: E(): 2.6e-88, 70.6% id in 313 aa, and to Bacteroides thetaiotaomicron putative UDP-glucose 4-epimerase BT1059 SWALL:AAO76166 (EMBL:AE016930) (309 aa) fasta scores: E(): 1.5e-93, 76.94% id in 308 aa, and to Xylella fastidiosa dTDP-glucose 4-6-dehydratase RfbB or PD1543 SWALL:AAO29385 (EMBL:AE012558) (329 aa) fasta scores: E(): 8.5e-86, 69.25% id in 309 aa; putative dNTP-hexose dehydratase-epimerase 1812499 3286380 BF9343_1479 Bacteroides fragilis NCTC 9343 putative dNTP-hexose dehydratase-epimerase YP_211200.1 1811555 D 272559 CDS YP_211201.1 60681057 3286384 1812492..1813931 1 NC_003228.3 Similar to Escherichia coli O-antigen repeat unit transporter Wzx SWALL:Q9RP63 (EMBL:AF172324) (473 aa) fasta scores: E(): 8.7e-68, 39.74% id in 468 aa, and to Bacteroides thetaiotaomicron lipopolysaccharide biosynthesis protein BT1652 SWALL:AAO76759 (EMBL:AE016932) (480 aa) fasta scores: E(): 3.8e-104, 52.1% id in 476 aa, and to Bacteroides thetaiotaomicron putative lipopolysaccharide biosynthesis protein BT1717 SWALL:AAO76824 (EMBL:AE016933) (494 aa) fasta scores: E(): 1.3e-89, 47.68% id in 476 aa; putative polysaccharide transporter/flippase 1813931 3286384 BF9343_1480 Bacteroides fragilis NCTC 9343 putative polysaccharide transporter/flippase YP_211201.1 1812492 D 272559 CDS YP_211202.1 60681058 3286382 1814126..1815052 1 NC_003228.3 Similar to Escherichia coli UDP-glucose:(glucosyl) LPS alpha1,3-glucosyltransferase WaaO SWALL:Q9R9D1 (EMBL:AF019747) (338 aa) fasta scores: E(): 2e-19, 27.9% id in 301 aa, and to Bacillus subtilis general stress protein A GspA or Ipa-12D SWALL:GSPA_BACSU (SWALL:P25148) (286 aa) fasta scores: E(): 6.2e-24, 29.74% id in 279 aa, and to Enterococcus faecalis general stress protein A GspA-2 or EF1811 SWALL:AAO81579 (EMBL:AE016952) (281 aa) fasta scores: E(): 2.9e-21, 29.36% id in 269 aa; putative glucosyltransferase 1815052 3286382 BF9343_1481 Bacteroides fragilis NCTC 9343 putative glucosyltransferase YP_211202.1 1814126 D 272559 CDS YP_211203.1 60681059 3286386 1815049..1815963 1 NC_003228.3 Similar to Prevotella intermedia hemolysin hemolytic protein SWALL:O68620 (EMBL:AF052516) (308 aa) fasta scores: E(): 3.4e-39, 41.63% id in 269 aa, and to Mycobacterium avium hemolytic protein HlpA SWALL:Q8GE91 (EMBL:AY130970) (324 aa) fasta scores: E(): 4.4e-45, 41.19% id in 301 aa, and to Anabaena sp. HlpA protein or ALL4429 SWALL:Q8YNY0 (EMBL:AP003596) (308 aa) fasta scores: E(): 6.7e-44, 40.29% id in 273 aa; putative glyocosyltransferase protein 1815963 3286386 BF9343_1482 Bacteroides fragilis NCTC 9343 putative glyocosyltransferase protein YP_211203.1 1815049 D 272559 CDS YP_211204.1 60681060 3286385 1815963..1816916 1 NC_003228.3 no significant database matches; hypothetical protein 1816916 3286385 BF9343_1483 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211204.1 1815963 D 272559 CDS YP_211205.1 60681061 3286364 1816930..1817727 1 NC_003228.3 Similar to Leptospira interrogans hypothetical 31.4 kDa protein SWALL:Q8VTX0 (EMBL:AF316559) (265 aa) fasta scores: E(): 3.5e-21, 36.94% id in 203 aa, and to Leptospira interrogans hypothetical 31.4 kDa protein SWALL:Q9AEE4 (EMBL:U61226) (265 aa) fasta scores: E(): 4e-21, 36.45% id in 203 aa, and to Leptospira interrogans hypothetical 31.4 kDa protein SWALL:Q8VTX7 (EMBL:AF316500) (265 aa) fasta scores: E(): 4e-21, 36.45% id in 203 aa; putative glycosyltransferase 1817727 3286364 BF9343_1484 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_211205.1 1816930 D 272559 CDS YP_211206.1 60681062 3286363 1817727..1818863 1 NC_003228.3 Similar to Ralstonia solanacearum probable transmembrane protein RSC1300 or RS02876 SWALL:Q8XZU5 (EMBL:AL646063) (412 aa) fasta scores: E(): 4.2e-14, 23.54% id in 310 aa; putative transmembrane protein 1818863 3286363 BF9343_1485 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211206.1 1817727 D 272559 CDS YP_211207.1 60681063 3286367 1818871..1819650 1 NC_003228.3 Similar to Shigella dysenteriae O-antigen related RfpA SWALL:Q53451 (EMBL:S73325) (269 aa) fasta scores: E(): 2e-19, 35.29% id in 255 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0379 SWALL:Q8FSL1 (EMBL:AP005215) (336 aa) fasta scores: E(): 1.1e-24, 41.37% id in 232 aa, and to Escherichia coli putative glycosyltransferase WbgP SWALL:Q8VQ42 (EMBL:AF461121) (251 aa) fasta scores: E(): 1.2e-20, 33.75% id in 237 aa; putative glycosyltransferase O-antigen related protein 1819650 3286367 BF9343_1486 Bacteroides fragilis NCTC 9343 putative glycosyltransferase O-antigen related protein YP_211207.1 1818871 D 272559 CDS YP_211208.1 60681064 3286366 1819638..1820456 1 NC_003228.3 Similar to Acinetobacter calcoaceticus EpsX protein SWALL:Q43940 (EMBL:X81320) (265 aa) fasta scores: E(): 1e-32, 36.68% id in 259 aa, and to Bacteroides thetaiotaomicron putative lipopolysaccharide biosynthesis glycosyltransferase BT1340 SWALL:AAO76447 (EMBL:AE016931) (270 aa) fasta scores: E(): 9.8e-48, 49.04% id in 261 aa, and to Klebsiella pneumoniae rhamnosyl transferase wbbL SWALL:Q9ZFN7 (EMBL:AF097519) (276 aa) fasta scores: E(): 1.2e-33, 38.46% id in 260 aa; putative lipopolysaccharide biosynthesis glycosyltransferase 1820456 3286366 BF9343_1487 Bacteroides fragilis NCTC 9343 putative lipopolysaccharide biosynthesis glycosyltransferase YP_211208.1 1819638 D 272559 CDS YP_211209.1 60681065 3286372 1820456..1821364 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 UDP-GlcNac 4-epimerase Gne or Z3206 or ECS2847 SWALL:Q8X7P7 (EMBL:AF461121) (331 aa) fasta scores: E(): 1.5e-15, 29% id in 300 aa, and to Bacteroides thetaiotaomicron putative UDP-galactose 4-epimerase BT2887 SWALL:AAO77993 (EMBL:AE016937) (326 aa) fasta scores: E(): 1.9e-17, 29.71% id in 313 aa, and to Edwardsiella ictaluri UDP-glucose 4-epimerase WbeiT SWALL:Q937X6 (EMBL:AY057452) (323 aa) fasta scores: E(): 2.8e-14, 30.54% id in 311 aa; putative DNTP-hexose dehydratase-epimerase 1821364 3286372 BF9343_1488 Bacteroides fragilis NCTC 9343 putative DNTP-hexose dehydratase-epimerase YP_211209.1 1820456 D 272559 CDS YP_211210.1 60681066 3286368 1821480..1822427 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative UNDpp-quiNAc-p-transferase wcgX SWALL:Q9F748 (EMBL:AF285774) (316 aa) fasta scores: E(): 1.1e-109, 85.66% id in 314 aa, and to previously sequenced Bacteroides fragilis putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase wcfL SWALL:Q9XDJ1 (EMBL:AF048749) (318 aa) fasta scores: E(): 1.6e-107, 81.47% id in 313 aa, and to Bacteroides thetaiotaomicron putative udp-glcnac:undecaprenylphosphate glcnac-1-phosphate transferase BT0396 SWALL:AAO75503 (EMBL:AE016927) (329 aa) fasta scores: E(): 9.9e-66, 53.6% id in 319 aa; putative glycosyltransferase 1822427 3286368 BF9343_1489 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_211210.1 1821480 D 272559 CDS YP_211211.1 60681067 3289330 complement(1822486..1824060) 1 NC_003228.3 Similar to Escherichia coli ribonuclease E Rne or Ams or Hmp1 or B1084 SWALL:RNE_ECOLI (SWALL:P21513) (1061 aa) fasta scores: E(): 3.7e-42, 32.88% id in 523 aa, and to Bacteroides thetaiotaomicron ribonuclease G BT1500 SWALL:AAO76607 (EMBL:AE016932) (524 aa) fasta scores: E(): 1.7e-187, 94.65% id in 524 aa, and to Chlorobium tepidum ribonuclease G CafA or CT2260 SWALL:Q8KAA6 (EMBL:AE012970) (560 aa) fasta scores: E(): 1e-55, 36.57% id in 555 aa; putative ribonuclease E 1824060 rne 3289330 rne Bacteroides fragilis NCTC 9343 putative ribonuclease E YP_211211.1 1822486 R 272559 CDS YP_211212.1 60681068 3286349 complement(1824211..1824303) 1 NC_003228.3 Similar to Borrelia burgdorferi hypothetical protein Bb0822 SWALL:Y822_BORBU (SWALL:O51762) (31 aa) fasta scores: E(): 1.3e-05, 68.96% id in 29 aa; hypothetical protein 1824303 3286349 BF9343_1491 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211212.1 1824211 R 272559 CDS YP_211213.1 60681069 3288946 complement(1824339..1824614) 1 NC_003228.3 Similar to Bacillus stearothermophilus, Bacillus caldolyticus, and Bacillus caldotenax DNA-binding protein HU Hup or Hbs or HbsU SWALL:DBH_BACST (SWALL:P02346) (90 aa) fasta scores: E(): 3.2e-08, 35.55% id in 90 aa, and to Bacteroides thetaiotaomicron DNA-binding protein HU BT1499 SWALL:AAO76606 (EMBL:AE016932) (91 aa) fasta scores: E(): 5.1e-29, 92.3% id in 91 aa, and to Oceanobacillus iheyensis non-specific DNA-binding protein OB1792 SWALL:Q8EQB2 (EMBL:AP004599) (90 aa) fasta scores: E(): 2.3e-08, 40% id in 90 aa; putative histone-like DNA-binding protein HU1 1824614 hup1 3288946 hup1 Bacteroides fragilis NCTC 9343 putative histone-like DNA-binding protein HU1 YP_211213.1 1824339 R 272559 CDS YP_211214.1 60681070 3286351 1824820..1825866 1 NC_003228.3 Similar to Salmonella typhimurium A/G-specific adenine glycosylase MutY or MutB or STM3110 SWALL:MUTY_SALTY (SWALL:Q05869) (350 aa) fasta scores: E(): 3.8e-34, 38.52% id in 257 aa, and to Bacteroides thetaiotaomicron A/G-specific adenine glycosylase BT1498 SWALL:AAO76605 (EMBL:AE016932) (357 aa) fasta scores: E(): 5.7e-113, 80.29% id in 340 aa, and to Lactococcus lactis A/G-specific adenine glycosylase MutY or ll0841 SWALL:Q9CH97 (EMBL:AE006318) (387 aa) fasta scores: E(): 7.6e-43, 38.46% id in 325 aa; putative A/G-specific adenine glycosylase 1825866 3286351 BF9343_1493 Bacteroides fragilis NCTC 9343 putative A/G-specific adenine glycosylase YP_211214.1 1824820 D 272559 CDS YP_211215.1 60681071 3286355 1825912..1827480 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative arylsulfatase precursor BT4631 SWALL:AAO79736 (EMBL:AE016946) (520 aa) fasta scores: E(): 1.9e-146, 67.95% id in 518 aa, and to Bacteroides thetaiotaomicron putative secreted sulfatase BT1624 SWALL:AAO76731 (EMBL:AE016932) (515 aa) fasta scores: E(): 1.1e-119, 56.34% id in 520 aa; putative arylsulfatase 1827480 3286355 BF9343_1494 Bacteroides fragilis NCTC 9343 putative arylsulfatase YP_211215.1 1825912 D 272559 CDS YP_211216.1 60681072 3287427 1827568..1828026 1 NC_003228.3 Similar to Salmonella typhimurium, and Salmonella typhi single-strand binding protein Ssb or STM4256 or STY4451 or t4161 SWALL:SSB_SALTY (SWALL:P37435) (175 aa) fasta scores: E(): 4.6e-17, 47.51% id in 141 aa, and to Bacteroides thetaiotaomicron single-strand binding protein BT1497 SWALL:AAO76604 (EMBL:AE016932) (161 aa) fasta scores: E(): 5.7e-34, 69.56% id in 161 aa, and to Shewanella hanedai single stranded DNA-binding protein Ssb SWALL:P77953 (EMBL:U64098) (226 aa) fasta scores: E(): 5.8e-19, 47.74% id in 155 aa; putative single-strand binding protein 1828026 ssb 3287427 ssb Bacteroides fragilis NCTC 9343 putative single-strand binding protein YP_211216.1 1827568 D 272559 CDS YP_211217.1 60681073 3286353 1828189..1829508 1 NC_003228.3 Similar to Cytophaga johnsonae gliding motility protein GldE SWALL:Q9EZL7 (EMBL:AF287009) (431 aa) fasta scores: E(): 1.9e-68, 43.31% id in 441 aa, and to Bacteroides thetaiotaomicron hemolysin-related protein, containing CBS domain BT1496 SWALL:AAO76603 (EMBL:AE016932) (352 aa) fasta scores: E(): 3.1e-119, 87.71% id in 350 aa; putative transmembrane CorC/HlyC family transporter associated protein 1829508 3286353 BF9343_1496 Bacteroides fragilis NCTC 9343 putative transmembrane CorC/HlyC family transporter associated protein YP_211217.1 1828189 D 272559 CDS YP_211218.1 60681074 3286357 1829523..1830197 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron siderophore BT1495 SWALL:AAO76602 (EMBL:AE016932) (201 aa) fasta scores: E(): 2.9e-41, 55.77% id in 199 aa; hypothetical protein 1830197 3286357 BF9343_1497 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211218.1 1829523 D 272559 CDS YP_211219.1 60681075 3286356 1830215..1832521 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1247 SWALL:AAO76354 (EMBL:AE016931) (863 aa) fasta scores: E(): 2.4e-27, 27.04% id in 821 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3424 SWALL:AAO78530 (EMBL:AE016940) (912 aa) fasta scores: E(): 2e-23, 22.81% id in 903 aa; hypothetical protein 1832521 3286356 BF9343_1498 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211219.1 1830215 D 272559 CDS YP_211220.1 60681076 3286338 1833427..1834290 1 NC_003228.3 no significant database matches; hypothetical protein 1834290 3286338 BF9343_1500 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211220.1 1833427 D 272559 CDS YP_211221.1 60681077 3286342 1834355..1835419 1 NC_003228.3 no significant database matches; hypothetical protein 1835419 3286342 BF9343_1501 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211221.1 1834355 D 272559 CDS YP_211222.1 60681078 3286341 1835446..1836474 1 NC_003228.3 no significant database matches; hypothetical protein 1836474 3286341 BF9343_1502 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211222.1 1835446 D 272559 CDS YP_211223.1 60681079 3286347 1836524..1838038 1 NC_003228.3 no significant database matches; hypothetical protein 1838038 3286347 BF9343_1503 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211223.1 1836524 D 272559 CDS YP_211224.1 60681080 3286346 complement(1838091..1839458) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1486 SWALL:AAO76593 (EMBL:AE016932) (496 aa) fasta scores: E(): 3.5e-11, 25% id in 476 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1487 SWALL:AAO76594 (EMBL:AE016932) (448 aa) fasta scores: E(): 1.3e-07, 26.76% id in 482 aa; hypothetical protein 1839458 3286346 BF9343_1504 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211224.1 1838091 R 272559 CDS YP_211225.1 60681081 3286325 complement(1839494..1841536) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative surface protein BT1490 SWALL:AAO76597 (EMBL:AE016932) (663 aa) fasta scores: E(): 5.4e-165, 63.66% id in 655 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1488 SWALL:AAO76595 (EMBL:AE016932) (273 aa) fasta scores: E(): 9.4e-21, 41.31% id in 288 aa, and to Bacteroides thetaiotaomicron putative cell surface protein BT1956 SWALL:AAO77063 (EMBL:AE016934) (593 aa) fasta scores: E(): 3.2e-20, 43.4% id in 288 aa; hypothetical protein 1841536 3286325 BF9343_1505 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211225.1 1839494 R 272559 CDS YP_211226.1 60681082 3289216 complement(1841583..1843619) 1 NC_003228.3 Similar to Escherichia coli vitamin B12 receptor precursor BtuB or Bfe or Cer or DcrC or B3966 SWALL:BTUB_ECOLI (SWALL:P06129) (614 aa) fasta scores: E(): 1.7e-05, 23.2% id in 668 aa, and to Bacteroides thetaiotaomicron vitamin B12 receptor, outer membrane BT1489 SWALL:AAO76596 (EMBL:AE016932) (681 aa) fasta scores: E(): 1.5e-210, 75.86% id in 667 aa; putative vitamin B12 receptor 1843619 btuB 3289216 btuB Bacteroides fragilis NCTC 9343 putative vitamin B12 receptor YP_211226.1 1841583 R 272559 CDS YP_211227.1 60681083 3286323 complement(1843616..1843981) 1 NC_003228.3 no significant database matches; hypothetical protein 1843981 3286323 BF9343_1507 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211227.1 1843616 R 272559 CDS YP_211228.1 60681084 3286330 complement(1844724..1845659) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1485 SWALL:AAO76592 (EMBL:AE016932) (311 aa) fasta scores: E(): 1.9e-78, 63.54% id in 310 aa; hypothetical protein 1845659 3286330 BF9343_1508 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211228.1 1844724 R 272559 CDS YP_211229.1 60681085 3286327 1845754..1847592 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein, with weak BamHI domain BT1809 from codon 660 to 1280 SWALL:AAO76916 (EMBL:AE016933) (1676 aa) fasta scores: E(): 1.4e-40, 33.49% id in 627 aa, and to Fusobacterium nucleatum hypothetical protein Fn0033 from codon 550 to 1210 SWALL:Q8RH77 (EMBL:AE010518) (1607 aa) fasta scores: E(): 1.2e-26, 25.49% id in 663 aa.; hypothetical protein 1847592 3286327 BF9343_1509 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211229.1 1845754 D 272559 CDS YP_211230.1 60681086 3286337 complement(1847598..1849430) 1 NC_003228.3 Similar to Bacillus subtilis sensor protein ResE or BSU23110 SWALL:RESE_BACSU (SWALL:P35164) (589 aa) fasta scores: E(): 3e-25, 25.16% id in 616 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1483 SWALL:Q8A7P1 (EMBL:AE016932) (593 aa) fasta scores: E(): 9.6e-190, 84% id in 594 aa, and to Enterococcus faecalis sensory box histidine kinase ef1704 SWALL:Q834F1 (EMBL:AE016952) (591 aa) fasta scores: E(): 7.3e-31, 29.66% id in 600 aa; putative two-component histidine kinase sensor protein 1849430 3286337 BF9343_1510 Bacteroides fragilis NCTC 9343 putative two-component histidine kinase sensor protein YP_211230.1 1847598 R 272559 CDS YP_211231.1 60681087 3286335 complement(1849519..1850208) 1 NC_003228.3 Similar to Thermotoga maritima DNA-binding response regulator DrrA SWALL:P74922 (EMBL:U67196) (239 aa) fasta scores: E(): 6.9e-32, 43.96% id in 232 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT1482 SWALL:AAO76589 (EMBL:AE016932) (229 aa) fasta scores: E(): 1.2e-78, 93.01% id in 229 aa; putative two-component response regulator 1850208 3286335 BF9343_1511 Bacteroides fragilis NCTC 9343 putative two-component response regulator YP_211231.1 1849519 R 272559 CDS YP_211232.1 60681088 3286308 1850516..1851709 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1481 SWALL:AAO76588 (EMBL:AE016932) (397 aa) fasta scores: E(): 2.2e-139, 88.91% id in 397 aa; hypothetical protein 1851709 3286308 BF9343_1512 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211232.1 1850516 D 272559 CDS YP_211233.1 60681089 3286304 1851847..1853349 1 NC_003228.3 no significant database matches; hypothetical protein 1853349 3286304 BF9343_1513 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211233.1 1851847 D 272559 CDS YP_211234.1 60681090 3286314 1853364..1853729 1 NC_003228.3 no significant database matches; hypothetical protein 1853729 3286314 BF9343_1514 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211234.1 1853364 D 272559 CDS YP_211235.1 60681091 3286311 1853871..1854701 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1480 SWALL:AAO76587 (EMBL:AE016932) (268 aa) fasta scores: E(): 5.7e-81, 70.9% id in 275 aa; hypothetical protein 1854701 3286311 BF9343_1515 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211235.1 1853871 D 272559 CDS YP_211236.1 60681092 3286321 1854727..1856592 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1479 SWALL:Q8A7P5 (EMBL:AE016932) (622 aa) fasta scores: E(): 9.7e-202, 95.79% id in 618 aa, and to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG1225 SWALL:AAQ66314 (EMBL:AE017176) (623 aa) fasta scores: E(): 7e-114, 55.02% id in 627 aa, and to Bacillus anthracis ABC transporter, ATP-binding protein ba2164 SWALL:Q81R89 (EMBL:AE017030) (631 aa) fasta scores: E(): 8.8e-86, 45.39% id in 630 aa; putative ATP-binding component of ABC transporter 1856592 3286321 BF9343_1516 Bacteroides fragilis NCTC 9343 putative ATP-binding component of ABC transporter YP_211236.1 1854727 D 272559 CDS YP_211237.1 60681093 3286320 1856589..1857422 1 NC_003228.3 Similar to Bacillus halodurans histidinol-phosphatase HisK or BH3206 SWALL:HIS9_BACHD (SWALL:Q9K801) (273 aa) fasta scores: E(): 4.4e-07, 25.81% id in 275 aa, and to Bacteroides thetaiotaomicron putative histidinol-phosphatase BT1478 SWALL:Q8A7P6 (EMBL:AE016932) (280 aa) fasta scores: E(): 1.3e-92, 77.17% id in 276 aa; possible histidinol-phosphatase 1857422 3286320 BF9343_1517 Bacteroides fragilis NCTC 9343 possible histidinol-phosphatase YP_211237.1 1856589 D 272559 CDS YP_211238.1 60681094 3286290 1857434..1858258 1 NC_003228.3 Similar to Flavobacterium keratolyticus endo-beta-galactosidase SWALL:Q9ZG90 (EMBL:AF083896) (422 aa) fasta scores: E(): 3.8e-37, 40.41% id in 240 aa, and to Bacteroides thetaiotaomicron beta-glucanase precursor BT2550 SWALL:Q8A4P7 (EMBL:AE016936) (268 aa) fasta scores: E(): 1.1e-43, 45.27% id in 254 aa, and to Rhodothermus marinus beta-glucanase precursor BglA SWALL:GUB_RHOMR (SWALL:P45798) (286 aa) fasta scores: E(): 5.9e-30, 35.83% id in 293 aa; putative endo-beta-galactosidase 1858258 3286290 BF9343_1518 Bacteroides fragilis NCTC 9343 putative endo-beta-galactosidase YP_211238.1 1857434 D 272559 CDS YP_211239.1 60681095 3286285 complement(1858273..1860297) 1 NC_003228.3 Similar to Pedobacter heparinus chondroitinase AC precursor CslA or ChnaC SWALL:CSLA_PEDHE (SWALL:Q59288) (700 aa) fasta scores: E(): 2.5e-39, 26.99% id in 663 aa, and to Vibrio vulnificus conserved hypothetical protein VV21090 SWALL:Q8D537 (EMBL:AE016811) (683 aa) fasta scores: E(): 8.1e-47, 29.43% id in 598 aa, and to Vibrio vulnificus conserved hypothetical protein VV21110 SWALL:Q8D518 (EMBL:AE016811) (839 aa) fasta scores: E(): 1.4e-45, 29.63% id in 604 aa; putative chondroitinase AC precursor 1860297 3286285 BF9343_1519 Bacteroides fragilis NCTC 9343 putative chondroitinase AC precursor YP_211239.1 1858273 R 272559 CDS YP_211240.1 60681096 3286296 complement(1860381..1861616) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1477 SWALL:Q8A7P7 (EMBL:AE016932) (411 aa) fasta scores: E(): 4.9e-141, 80.77% id in 411 aa, and to Aeropyrum pernix hypothetical protein Ape1887 SWALL:Q9YAQ6 (EMBL:AP000062) (433 aa) fasta scores: E(): 6.9e-25, 29.21% id in 356 aa, and to Pyrobaculum aerophilum hypothetical protein Pae1173 SWALL:Q8ZXP6 (EMBL:AE009807) (375 aa) fasta scores: E(): 3.6e-14, 27.74% id in 346 aa; hypothetical protein 1861616 3286296 BF9343_1520 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211240.1 1860381 R 272559 CDS YP_211241.1 60681097 3286293 1861787..1862986 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron aspartate aminotransferase BT1476 SWALL:Q8A7P8 (EMBL:AE016932) (399 aa) fasta scores: E(): 2e-153, 96.99% id in 399 aa, and to Anopheles gambiae str. PEST ebip112 SWALL:EAA02557 (EMBL:AAAB01005414) (395 aa) fasta scores: E(): 3.6e-78, 50.63% id in 395 aa, and to Clostridium tetani aspartate aminotransferase CTC01309 SWALL:Q895G6 (EMBL:AE015940) (399 aa) fasta scores: E(): 6.9e-69, 46.19% id in 394 aa; putative aspartate aminotransferase 1862986 3286293 BF9343_1521 Bacteroides fragilis NCTC 9343 putative aspartate aminotransferase YP_211241.1 1861787 D 272559 CDS YP_211242.1 60681098 3286299 1863059..1864303 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, permease protein BT1475 SWALL:Q8A7P9 (EMBL:AE016932) (385 aa) fasta scores: E(): 5.7e-123, 81.29% id in 385 aa, and to Porphyromonas gingivalis W83 membrane protein, putative PG1252 SWALL:AAQ66335 (EMBL:AE017176) (411 aa) fasta scores: E(): 5.1e-45, 34.12% id in 422 aa, and to Nitrosomonas europaea duf214 NE1057 SWALL:Q82VL8 (EMBL:BX321859) (415 aa) fasta scores: E(): 1.9e-22, 26.04% id in 407 aa. Possible alternative start site at codon 30; putative transmembrane permease 1864303 3286299 BF9343_1522 Bacteroides fragilis NCTC 9343 putative transmembrane permease YP_211242.1 1863059 D 272559 CDS YP_211243.1 60681099 3286298 complement(1864309..1865481) 1 NC_003228.3 Similar to Lactococcus lactis exopolysaccharide EpsG SWALL:O06035 (EMBL:AF036485) (316 aa) fasta scores: E(): 1.3e-06, 25.38% id in 260 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1472 SWALL:Q8A7Q2 (EMBL:AE016932) (390 aa) fasta scores: E(): 2.6e-120, 73.33% id in 390 aa, and to Anabaena sp. hypothetical protein ALL1737 SWALL:Q8YW79 (EMBL:AP003587) (322 aa) fasta scores: E(): 2.9e-08, 26.47% id in 238 aa; putative transmembrane glycosyltransferase 1865481 3286298 BF9343_1523 Bacteroides fragilis NCTC 9343 putative transmembrane glycosyltransferase YP_211243.1 1864309 R 272559 CDS YP_211244.1 60681100 3286269 complement(1865552..1866550) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1471 SWALL:Q8A7Q3 (EMBL:AE016932) (341 aa) fasta scores: E(): 4.6e-98, 78.55% id in 331 aa, and to Vibrio parahaemolyticus putative permease vp2476 SWALL:Q87LY2 (EMBL:AP005081) (361 aa) fasta scores: E(): 2.9e-22, 28.77% id in 344 aa, and to Methanosarcina mazei hypothetical protein Mm2877 SWALL:Q8PT41 (EMBL:AE013538) (347 aa) fasta scores: E(): 2.8e-20, 28.82% id in 340 aa; putative transmembrane protein 1866550 3286269 BF9343_1524 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211244.1 1865552 R 272559 CDS YP_211245.1 60681101 3286268 complement(1866619..1867869) 1 NC_003228.3 Similar to Myxococcus xanthus sensor protein pilS SWALL:Q50903 (EMBL:L39904) (525 aa) fasta scores: E(): 1.4e-15, 27.27% id in 352 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT1470 SWALL:Q8A7Q4 (EMBL:AE016932) (416 aa) fasta scores: E(): 2.7e-98, 61.29% id in 416 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT0689 SWALL:Q8A9X6 (EMBL:AE016928) (438 aa) fasta scores: E(): 1.2e-27, 34.98% id in 423 aa; putative two-component system sensor histidine kinase protein 1867869 3286268 BF9343_1525 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase protein YP_211245.1 1866619 R 272559 CDS YP_211246.1 60681102 3286274 complement(1867875..1869212) 1 NC_003228.3 Similar to Salmonella typhimurium transcriptional regulatory protein ZraR or HydG or STM4174 or STMf1.27 SWALL:ZRAR_SALTY (SWALL:P25852) (441 aa) fasta scores: E(): 2.1e-54, 39.36% id in 442 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT1469 SWALL:Q8A7Q5 (EMBL:AE016932) (453 aa) fasta scores: E(): 3.3e-133, 81.41% id in 452 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT0690 SWALL:Q8A9X5 (EMBL:AE016928) (447 aa) fasta scores: E(): 2.4e-81, 51.91% id in 445 aa; putative two-component response regulator transcriptional regulatory protein 1869212 3286274 BF9343_1526 Bacteroides fragilis NCTC 9343 putative two-component response regulator transcriptional regulatory protein YP_211246.1 1867875 R 272559 CDS YP_211247.1 60681103 3286271 1869493..1870812 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane efflux protein BT1468 SWALL:Q8A7Q6 (EMBL:AE016931) (413 aa) fasta scores: E(): 8.6e-112, 71.77% id in 411 aa, and to Porphyromonas gingivalis W83 outer membrane efflux protein PG0679 SWALL:AAQ65854 (EMBL:AE017174) (444 aa) fasta scores: E(): 6.4e-30, 28.7% id in 446 aa, and to Porphyromonas gingivalis immunoreactive 50kd antigen PG53 SWALL:Q9S3R3 (EMBL:AF175720) (444 aa) fasta scores: E(): 7.4e-30, 28.7% id in 446 aa; putative outer membrane protein 1870812 3286271 BF9343_1527 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211247.1 1869493 D 272559 CDS YP_211248.1 60681104 3286282 1870953..1872200 1 NC_003228.3 Similar to Acinetobacter baumannii AdeA membrane fusion protein SWALL:Q93E20 (EMBL:AF370885) (396 aa) fasta scores: E(): 1.8e-05, 24.92% id in 337 aa, and to Bacteroides thetaiotaomicron ABC transporter permease BT1467 SWALL:Q8A7Q7 (EMBL:AE016931) (415 aa) fasta scores: E(): 5.2e-123, 84.81% id in 415 aa, and to Porphyromonas gingivalis W83 efflux transporter, MFP component, RND family PG0680 SWALL:AAQ65855 (EMBL:AE017174) (417 aa) fasta scores: E(): 5.2e-71, 50.72% id in 416 aa; putative HlyD-family transporter component 1872200 3286282 BF9343_1528 Bacteroides fragilis NCTC 9343 putative HlyD-family transporter component YP_211248.1 1870953 D 272559 CDS YP_211249.1 60681105 3286281 1872213..1874618 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter permease BT1465 SWALL:Q8A7Q9 (EMBL:AE016931) (806 aa) fasta scores: E(): 8.9e-131, 41.09% id in 803 aa, and to Porphyromonas gingivalis W83 ABC transporter, permease protein, putative PG0683 SWALL:AAQ65858 (EMBL:AE017174) (788 aa) fasta scores: E(): 1.7e-32, 23.12% id in 813 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0859 SWALL:Q8A9F6 (EMBL:AE016929) (791 aa) fasta scores: E(): 1.1e-26, 25.84% id in 828 aa; putative FtsX-related transporter permease 1874618 3286281 BF9343_1529 Bacteroides fragilis NCTC 9343 putative FtsX-related transporter permease YP_211249.1 1872213 D 272559 CDS YP_211250.1 60681106 3286248 1874640..1875356 1 NC_003228.3 Similar to Erwinia chrysanthemi ATPase UntA SWALL:Q8RKC8 (EMBL:AJ438188) (235 aa) fasta scores: E(): 1.3e-36, 50.87% id in 228 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1466 SWALL:Q8A7Q8 (EMBL:AE016931) (238 aa) fasta scores: E(): 1.7e-72, 90.33% id in 238 aa, and to Bacteroides thetaiotaomicron putative ABC transporter ATP-binding protein BT0860 SWALL:Q8A9F5 (EMBL:AE016929) (224 aa) fasta scores: E(): 2.8e-49, 66.51% id in 221 aa; putative ABC transport system ATP-binding protein 1875356 3286248 BF9343_1530 Bacteroides fragilis NCTC 9343 putative ABC transport system ATP-binding protein YP_211250.1 1874640 D 272559 CDS YP_211251.1 60681107 3286283 1875353..1877773 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter permease BT1465 SWALL:Q8A7Q9 (EMBL:AE016931) (806 aa) fasta scores: E(): 0, 85.36% id in 806 aa, and to Porphyromonas gingivalis W83 ABC transporter, permease protein, putative PG0683 SWALL:AAQ65858 (EMBL:AE017174) (788 aa) fasta scores: E(): 1.1e-38, 24.81% id in 818 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0859 SWALL:Q8A9F6 (EMBL:AE016929) (791 aa) fasta scores: E(): 2.4e-27, 25.3% id in 818 aa; putative FtsX-related transmembrane transport protein 1877773 3286283 BF9343_1531 Bacteroides fragilis NCTC 9343 putative FtsX-related transmembrane transport protein YP_211251.1 1875353 D 272559 CDS YP_211252.1 60681108 3286223 complement(1877945..1879300) 1 NC_003228.3 Similar to Corynebacterium glutamicum NADH dehydrogenase, FAD-containing subunit Ndh or CGL1465 SWALL:Q9X710 (EMBL:AJ238250) (467 aa) fasta scores: E(): 4e-41, 33.47% id in 466 aa, and to Bacteroides thetaiotaomicron putative NADH dehydrogenase BT1537 SWALL:Q8A7I7 (EMBL:AE016932) (463 aa) fasta scores: E(): 2.3e-146, 83.77% id in 450 aa, and to Leptospira interrogans NADH dehydrogenase Ndh or LB036 SWALL:Q8EY21 (EMBL:AE011592) (422 aa) fasta scores: E(): 5e-50, 36.4% id in 412 aa; putative NADH dehydrogenase, FAD-containing subunit 1879300 ndh 3286223 ndh Bacteroides fragilis NCTC 9343 putative NADH dehydrogenase, FAD-containing subunit YP_211252.1 1877945 R 272559 CDS YP_211253.1 60681109 3286249 complement(1879473..1879634) 1 NC_003228.3 no significant database matches; hypothetical protein 1879634 3286249 BF9343_1533 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211253.1 1879473 R 272559 CDS YP_211254.1 60681110 3289234 complement(1879712..1880353) 1 NC_003228.3 Similar to Bacillus sphaericus dethiobiotin synthetase BioD SWALL:BIOD_BACSH (SWALL:P22818) (234 aa) fasta scores: E(): 2e-15, 34.69% id in 196 aa, and to Bacteroides thetaiotaomicron dethiobiotin synthetase BT1446 SWALL:Q8A7S8 (EMBL:AE016931) (215 aa) fasta scores: E(): 2.3e-61, 79.81% id in 213 aa, and to Neisseria meningitidis dethiobiotin synthetase BioD or NMA0943 SWALL:BIOD_NEIMA (SWALL:Q9JV95) (215 aa) fasta scores: E(): 2.6e-40, 54.63% id in 205 aa; putative dethiobiotin synthetase 1880353 bioD 3289234 bioD Bacteroides fragilis NCTC 9343 putative dethiobiotin synthetase YP_211254.1 1879712 R 272559 CDS YP_211255.1 60681111 3286245 complement(1880388..1881863) 1 NC_003228.3 Similar in its C-terminal region to Escherichia coli biotin synthesis protein Bioc or B0777 SWALL:BIOC_ECOLI (SWALL:P12999) (251 aa) fasta scores: E(): 6.2e-06, 26.31% id in 266 aa, in its N-terminal region to Neisseria meningitidis hypothetical protein NMA2011 SWALL:Q9JT30 (EMBL:AL162757) (260 aa) fasta scores: E(): 1.7e-31, 39.75% id in 249 aa, and in its C-terminal region to Neisseria meningitidis hypothetical protein NMA2012 SWALL:Q9JT29 (EMBL:AL162757) (215 aa) fasta scores: E(): 7.4e-27, 44.1% id in 195 aa; putative biotin synthesis-related fusion protein 1881863 3286245 BF9343_1535 Bacteroides fragilis NCTC 9343 putative biotin synthesis-related fusion protein YP_211255.1 1880388 R 272559 CDS YP_211256.1 60681112 3289220 complement(1881871..1883064) 1 NC_003228.3 Similar to Bacillus sphaericus 8-amino-7-oxononanoate synthase BioF SWALL:BIOF_BACSH (SWALL:P22806) (389 aa) fasta scores: E(): 1.5e-44, 36.95% id in 387 aa, and to Bacteroides thetaiotaomicron 8-amino-7-oxononanoate synthase BT1443 SWALL:Q8A7T1 (EMBL:AE016931) (384 aa) fasta scores: E(): 7.7e-101, 68.98% id in 374 aa, and to Pasteurella multocida BioF or PM1901 SWALL:Q9CJU0 (EMBL:AE006227) (387 aa) fasta scores: E(): 8.3e-81, 54.68% id in 384 aa; putative 8-amino-7-oxononanoate synthase 1883064 bioF 3289220 bioF Bacteroides fragilis NCTC 9343 putative 8-amino-7-oxononanoate synthase YP_211256.1 1881871 R 272559 CDS YP_211257.1 60681113 3289161 complement(1883203..1885449) 1 NC_003228.3 C-terminus is similar to Salmonella typhimurium adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA or STM0793 SWALL:BIOA_SALTY (SWALL:P12677) (429 aa) fasta scores: E(): 1.6e-105, 61.19% id in 420 aa, and to entire Bacteroides thetaiotaomicron adenosylmethionine-8-amino-7-oxononanoate aminotransferase BT1442 SWALL:Q8A7T2 (EMBL:AE016931) (804 aa) fasta scores: E(): 0, 81.57% id in 738 aa, and C-terminus is similar to Porphyromonas gingivalis W83 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA or PG2080 SWALL:AAQ67041 (EMBL:AE017179) (433 aa) fasta scores: E(): 5.4e-114, 66.82% id in 416 aa; putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1885449 bioA 3289161 bioA Bacteroides fragilis NCTC 9343 putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_211257.1 1883203 R 272559 CDS YP_211258.1 60681114 3286262 1886174..1889302 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 9.1e-47, 31.19% id in 1058 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1440 SWALL:Q8A7T4 (EMBL:AE016931) (1042 aa) fasta scores: E(): 0, 76.12% id in 1043 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2268 SWALL:Q8A5H1 (EMBL:AE016935) (1026 aa) fasta scores: E(): 1.7e-68, 32.89% id in 1073 aa; putative outer membrane receptor protein 1889302 3286262 BF9343_1538 Bacteroides fragilis NCTC 9343 putative outer membrane receptor protein YP_211258.1 1886174 D 272559 CDS YP_211259.1 60681115 3286254 1889491..1891002 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1439 SWALL:Q8A7T5 (EMBL:AE016931) (493 aa) fasta scores: E(): 1.7e-144, 71.57% id in 482 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3280 SWALL:Q8A2M5 (EMBL:AE016939) (489 aa) fasta scores: E(): 7.4e-09, 23.47% id in 460 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2269 SWALL:Q8A5H0 (EMBL:AE016935) (469 aa) fasta scores: E(): 1.1e-05, 24.15% id in 443 aa; hypothetical protein 1891002 3286254 BF9343_1539 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211259.1 1889491 D 272559 CDS YP_211260.1 60681116 3287884 complement(1891138..1892637) 1 NC_003228.3 Similar to Streptococcus iniae L-lactate permease LctP SWALL:LCTP_STRIN (SWALL:O33654) (474 aa) fasta scores: E(): 1.8e-63, 43.01% id in 451 aa, and to Bacteroides thetaiotaomicron L-lactate permease BT1453 SWALL:Q8A7S1 (EMBL:AE016931) (499 aa) fasta scores: E(): 1.7e-163, 91.18% id in 499 aa, and to Clostridium tetani L-lactate permease CTC00972 SWALL:Q896M9 (EMBL:AE015939) (506 aa) fasta scores: E(): 5.4e-78, 44.57% id in 498 aa; putative L-lactate permease 1892637 lctP 3287884 lctP Bacteroides fragilis NCTC 9343 putative L-lactate permease YP_211260.1 1891138 R 272559 CDS YP_211261.1 60681117 3286266 complement(1892842..1894290) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1452 SWALL:Q8A7S2 (EMBL:AE016931) (484 aa) fasta scores: E(): 3.1e-145, 78.17% id in 481 aa, and C-terminus is similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1064 SWALL:Q8A8V3 (EMBL:AE016930) (392 aa) fasta scores: E(): 4.3e-54, 42% id in 369 aa; hypothetical protein 1894290 3286266 BF9343_1541 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211261.1 1892842 R 272559 CDS YP_211262.1 60681118 3286265 complement(1894342..1894935) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1451 SWALL:Q8A7S3 (EMBL:AE016931) (195 aa) fasta scores: E(): 1.3e-65, 79.48% id in 195 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2130 SWALL:AAQ67085 (EMBL:AE017179) (193 aa) fasta scores: E(): 2e-37, 54.16% id in 168 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1066 SWALL:Q8A8V1 (EMBL:AE016930) (189 aa) fasta scores: E(): 9e-37, 54.16% id in 168 aa; hypothetical protein 1894935 3286265 BF9343_1542 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211262.1 1894342 R 272559 CDS YP_211263.1 60681119 3285748 1895197..1896741 1 NC_003228.3 Similar to Myxococcus xanthus propionyl-coA carboxylase MxpccB SWALL:O24789 (EMBL:AB007000) (524 aa) fasta scores: E(): 5.9e-136, 68.55% id in 512 aa, and to Bacteroides thetaiotaomicron propionyl-CoA carboxylase beta chain BT1450 SWALL:Q8A7S4 (EMBL:AE016931) (514 aa) fasta scores: E(): 4.5e-185, 92.99% id in 514 aa, and to Thermoanaerobacter tengcongensis acetyl-CoA carboxylase alpha subunit AccA or TTE1220 SWALL:Q8RAJ4 (EMBL:AE013084) (516 aa) fasta scores: E(): 1.4e-129, 64.18% id in 511 aa; putative propionyl-CoA carboxylase 1896741 3285748 BF9343_1543 Bacteroides fragilis NCTC 9343 putative propionyl-CoA carboxylase YP_211263.1 1895197 D 272559 CDS YP_211264.1 60681120 3289072 1896760..1898271 1 NC_003228.3 Similar to Bacillus subtilis biotin carboxylase AccC or BSU24340 SWALL:ACCC_BACSU (SWALL:P49787) (448 aa) fasta scores: E(): 1.1e-94, 54.95% id in 444 aa, and to Bacteroides thetaiotaomicron biotin carboxylase BT1449 SWALL:Q8A7S5 (EMBL:AE016931) (503 aa) fasta scores: E(): 8.2e-186, 92.44% id in 503 aa, and to Bacteroides thetaiotaomicron pyruvate carboxylase subunit A BT1915 SWALL:Q8A6G9 (EMBL:AE016933) (503 aa) fasta scores: E(): 2.1e-103, 53.61% id in 498 aa. Note: Also similar to BF3337 (accC2) (507 aa) fasta scores: E(): 4.4e-107, 53.307% identity in 499 aa overlap; putative biotin carboxylase 1 1898271 accC1 3289072 accC1 Bacteroides fragilis NCTC 9343 putative biotin carboxylase 1 YP_211264.1 1896760 D 272559 CDS YP_211265.1 60681121 3286231 1898285..1898809 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron biotin carboxyl carrier protein BT1448 SWALL:Q8A7S6 (EMBL:AE016931) (174 aa) fasta scores: E(): 1.2e-51, 82.75% id in 174 aa, and to Thermoanaerobacter tengcongensis biotin carboxyl carrier protein AccB2 or TTE2383 SWALL:Q8R7M0 (EMBL:AE013180) (122 aa) fasta scores: E(): 6.3e-07, 32.79% id in 125 aa, and to Pyrococcus horikoshii 149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain ph1284 SWALL:O59021 (EMBL:AP000005) (149 aa) fasta scores: E(): 9.8e-07, 36.84% id in 133 aa, and to Pichia angusta pyruvate carboxylase Pyc SWALL:Q8X1T3 (EMBL:AF221670) (1175 aa) fasta scores: E(): 1.7e-06, 40.74% id in 108 aa; putative biotin-requiring enzyme 1898809 3286231 BF9343_1545 Bacteroides fragilis NCTC 9343 putative biotin-requiring enzyme YP_211265.1 1898285 D 272559 CDS YP_211266.1 60681122 3286237 complement(1898915..1900177) 1 NC_003228.3 Similar to N-terminus of Escherichia coli isoaspartyl dipeptidase IadA or B4328 SWALL:IADA_ECOLI (SWALL:P39377) (390 aa) fasta scores: E(): 0.065, 32.54% id in 126 aa, and to Bradyrhizobium japonicum BLL5570 protein SWALL:Q89IR4 (EMBL:AP005955) (504 aa) fasta scores: E(): 4.5e-78, 52.48% id in 423 aa, and to Rhizobium meliloti hypothetical protein ra0920 or SMA1677 SWALL:Q92YG0 (EMBL:AE007278) (480 aa) fasta scores: E(): 1.4e-70, 48.92% id in 419 aa; hypothetical protein 1900177 3286237 BF9343_1546 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211266.1 1898915 R 272559 CDS YP_211267.1 60681123 3286233 complement(1900436..1900621) 1 NC_003228.3 no significant database matches; hypothetical protein 1900621 3286233 BF9343_1547 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211267.1 1900436 R 272559 CDS YP_211268.1 60681124 3286242 1900660..1902285 1 NC_003228.3 no significant database matches; putative ATP/GTP-binding protein 1902285 3286242 BF9343_1548 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding protein YP_211268.1 1900660 D 272559 CDS YP_211269.1 60681125 3286240 1902308..1903900 1 NC_003228.3 no significant database matches; hypothetical protein 1903900 3286240 BF9343_1549 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211269.1 1902308 D 272559 CDS YP_211270.1 60681126 3286214 complement(1904081..1904287) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4498 SWALL:AAO79603 (EMBL:AE016945) (81 aa) fasta scores: E(): 1.3e-18, 68.65% id in 67 aa; hypothetical protein 1904287 3286214 BF9343_1550 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211270.1 1904081 R 272559 CDS YP_211271.1 60681127 3289211 1904851..1906200 1 NC_003228.3 Similar to Zymomonas mobilis dihydrolipoamide dehydrogenase Lpd SWALL:DLDH_ZYMMO (SWALL:P50970) (466 aa) fasta scores: E(): 5.2e-45, 33.26% id in 460 aa, and to Bacteroides thetaiotaomicron dihydrolipoamide dehydrogenase BT0309 SWALL:Q8AB03 (EMBL:AE016927) (447 aa) fasta scores: E(): 4.7e-130, 77.45% id in 448 aa, and to Porphyromonas gingivalis W83 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase PdhD or PG0802 SWALL:AAQ65962 (EMBL:AE017174) (449 aa) fasta scores: E(): 1.5e-91, 57.68% id in 449 aa; putative dihydrolipoamide dehydrogenase 1906200 lpd 3289211 lpd Bacteroides fragilis NCTC 9343 putative dihydrolipoamide dehydrogenase YP_211271.1 1904851 D 272559 CDS YP_211272.1 60681128 3289197 1906200..1906901 1 NC_003228.3 Similar to Mycoplasma capricolum lipoate-protein ligase LplA SWALL:Q49107 (EMBL:U62057) (334 aa) fasta scores: E(): 2.8e-13, 27.23% id in 213 aa, and to Bacteroides thetaiotaomicron lipoate-protein ligase A BT0310 SWALL:Q8AB02 (EMBL:AE016927) (239 aa) fasta scores: E(): 2.6e-44, 58.33% id in 216 aa, and to Thermoanaerobacter tengcongensis lipoate-protein ligase A LplA or TTE0297 SWALL:Q8RCV8 (EMBL:AE013002) (326 aa) fasta scores: E(): 1.1e-22, 35.04% id in 214 aa; putative lipoate-protein ligase 1906901 lplA 3289197 lplA Bacteroides fragilis NCTC 9343 putative lipoate-protein ligase YP_211272.1 1906200 D 272559 CDS YP_211273.1 60681129 3286218 1907410..1908777 1 NC_003228.3 Similar to Streptomyces seoulensis dihydrolipoamide acetyltransferase PdhB SWALL:Q9Z6I4 (EMBL:AF047034) (612 aa) fasta scores: E(): 1.3e-30, 38.03% id in 468 aa, and to Bacteroides thetaiotaomicron lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex BT0311 SWALL:Q8AB01 (EMBL:AE016927) (456 aa) fasta scores: E(): 1.7e-109, 75.8% id in 467 aa; putative dihydrolipoamide acetyltransferase 1908777 3286218 BF9343_1554 Bacteroides fragilis NCTC 9343 putative dihydrolipoamide acetyltransferase YP_211273.1 1907410 D 272559 CDS YP_211274.1 60681130 3286215 1908921..1910957 1 NC_003228.3 C-terminus is similar to Bacillus subtilis 2-oxoisovalerate dehydrogenase beta subunit BfmbaB or bfmb1B or BSU24040 SWALL:ODBB_BACSU (SWALL:P37941) (327 aa) fasta scores: E(): 2.3e-39, 39.02% id in 328 aa, and to entire Bacteroides thetaiotaomicron 2-oxoisovalerate dehydrogenase BT0312 SWALL:Q8AB00 (EMBL:AE016927) (678 aa) fasta scores: E(): 0, 88.03% id in 677 aa, and to Chlamydia muridarum 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit tc0618 SWALL:Q9PK54 (EMBL:AE002330) (678 aa) fasta scores: E(): 5.7e-75, 37.55% id in 655 aa; putative 2-oxoisovalerate dehydrogenase, alpha and beta subunits 1910957 3286215 BF9343_1555 Bacteroides fragilis NCTC 9343 putative 2-oxoisovalerate dehydrogenase, alpha and beta subunits YP_211274.1 1908921 D 272559 CDS YP_211275.1 60681131 3286227 1910976..1911482 1 NC_003228.3 Similar to Synechococcus sp. flavodoxin IsiB SWALL:FLAV_SYNP7 (SWALL:P10340) (169 aa) fasta scores: E(): 1.7e-22, 43.45% id in 168 aa, and to Bacteroides thetaiotaomicron flavodoxin BT0313 SWALL:Q8AAZ9 (EMBL:AE016927) (171 aa) fasta scores: E(): 7.8e-52, 78.57% id in 168 aa, and to Anabaena sp. flavodoxin IsiB or alr2405 SWALL:FLAV_ANASP (SWALL:P11241) (169 aa) fasta scores: E(): 2.6e-22, 43.97% id in 166 aa; putative flavodoxin 1911482 3286227 BF9343_1556 Bacteroides fragilis NCTC 9343 putative flavodoxin YP_211275.1 1910976 D 272559 CDS YP_211276.1 60681132 3287985 complement(1911559..1912401) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribosomal protein L11 methyltransferase PrmA or B3259 or C4024 or z4619 or ECS4131 or SF3297 or s3514 SWALL:PRMA_ECOLI (SWALL:P28637) (293 aa) fasta scores: E(): 2.1e-15, 33.33% id in 225 aa, and to Bacteroides thetaiotaomicron ribosomal protein L11 methyltransferase BT0314 SWALL:Q8AAZ8 (EMBL:AE016927) (280 aa) fasta scores: E(): 3.8e-97, 85.97% id in 278 aa, and to Porphyromonas gingivalis W83 ribosomal protein L11 methyltransferase PrmA or PG0635 SWALL:AAQ65819 (EMBL:AE017174) (311 aa) fasta scores: E(): 2.1e-48, 49.82% id in 283 aa; putative ribosomal protein L11 methyltransferase 1912401 prmA 3287985 prmA Bacteroides fragilis NCTC 9343 putative ribosomal protein L11 methyltransferase YP_211276.1 1911559 R 272559 CDS YP_211277.1 60681133 3286222 1913043..1913372 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0779 SWALL:AAO75886 (EMBL:AE016929) (107 aa) fasta scores: E(): 2.8e-18, 59.63% id in 109 aa, and to Bacteroides thetaiotaomicron hypothetical protein p5482_21 SWALL:AAO45319 (EMBL:AY171301) (90 aa) fasta scores: E(): 2.5e-05, 41.41% id in 99 aa; hypothetical protein 1913372 3286222 BF9343_1558 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211277.1 1913043 D 272559 CDS YP_211278.1 60681134 3286229 1914390..1915847 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron putative pyrogenic exotoxin B BT2451 SWALL:Q8A4Z6 (EMBL:AE016936) (426 aa) fasta scores: E(): 0.0088, 27.53% id in 483 aa; hypothetical protein 1915847 3286229 BF9343_1559 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211278.1 1914390 D 272559 CDS YP_211279.1 60681135 3286228 1915855..1916388 1 NC_003228.3 no significant database matches; hypothetical protein 1916388 3286228 BF9343_1560 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211279.1 1915855 D 272559 CDS YP_211280.1 60681136 3286206 1916722..1917093 1 NC_003228.3 no significant database matches; hypothetical protein 1917093 3286206 BF9343_1561 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211280.1 1916722 D 272559 CDS YP_211281.1 60681137 3286199 1917770..1919104 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0315 SWALL:Q8AAZ7 (EMBL:AE016927) (429 aa) fasta scores: E(): 3.7e-68, 63.14% id in 445 aa; hypothetical protein 1919104 3286199 BF9343_1562 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211281.1 1917770 D 272559 CDS YP_211282.1 60681138 3286208 1919139..1920809 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative hemin receptor BT0316 SWALL:Q8AAZ6 (EMBL:AE016927) (534 aa) fasta scores: E(): 1e-37, 53.01% id in 581 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1626 SWALL:AAQ66654 (EMBL:AE017177) (554 aa) fasta scores: E(): 1.9e-13, 26.67% id in 581 aa; hypothetical protein 1920809 3286208 BF9343_1563 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211282.1 1919139 D 272559 CDS YP_211283.1 60681139 3286207 complement(1920897..1921364) 1 NC_003228.3 Similar to Bacillus subtilis guanine deaminase GuaD or Gde or BSU13170 SWALL:GUAD_BACSU (SWALL:O34598) (156 aa) fasta scores: E(): 2.2e-26, 51.28% id in 156 aa, and to Bacteroides thetaiotaomicron cytidine/deoxycytidylate deaminase BT0321 SWALL:Q8AAZ1 (EMBL:AE016927) (156 aa) fasta scores: E(): 1.6e-53, 91.02% id in 156 aa, and to Porphyromonas gingivalis W83 cytidine/deoxycytidylate deaminase family protein PG1728 SWALL:AAQ66735 (EMBL:AE017178) (150 aa) fasta scores: E(): 1.7e-35, 64% id in 150 aa; putative nucleotide deaminase 1921364 3286207 BF9343_1564 Bacteroides fragilis NCTC 9343 putative nucleotide deaminase YP_211283.1 1920897 R 272559 CDS YP_211284.1 60681140 3286210 complement(1921532..1922425) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0323 SWALL:Q8AAY9 (EMBL:AE016927) (300 aa) fasta scores: E(): 1.6e-76, 63.36% id in 303 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0217 SWALL:AAQ65448 (EMBL:AE017172) (297 aa) fasta scores: E(): 6.6e-16, 27.77% id in 306 aa; hypothetical protein 1922425 3286210 BF9343_1565 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211284.1 1921532 R 272559 CDS YP_211285.1 60681141 3286189 complement(1922439..1922888) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0324 SWALL:Q8AAY8 (EMBL:AE016927) (149 aa) fasta scores: E(): 5.8e-43, 87.16% id in 148 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0216 SWALL:AAQ65447 (EMBL:AE017172) (166 aa) fasta scores: E(): 3.7e-15, 39.45% id in 147 aa; hypothetical protein 1922888 3286189 BF9343_1566 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211285.1 1922439 R 272559 CDS YP_211286.1 60681142 3286213 complement(1922917..1923342) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0325 SWALL:Q8AAY7 (EMBL:AE016927) (153 aa) fasta scores: E(): 9.2e-15, 58.27% id in 151 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0215 SWALL:AAQ65446 (EMBL:AE017172) (162 aa) fasta scores: E(): 9.6e-08, 32.16% id in 143 aa; hypothetical protein 1923342 3286213 BF9343_1567 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211286.1 1922917 R 272559 CDS YP_211287.1 60681143 3286191 complement(1923339..1923860) 1 NC_003228.3 Similar to Bacteroides fragilis fragilis regulatory region RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 1.7e-06, 28.48% id in 158 aa, and to Bacteroides thetaiotaomicron putative RNA polymerase ECF-type sigma factor BT0326 SWALL:Q8AAY6 (EMBL:AE016927) (173 aa) fasta scores: E(): 3.2e-51, 80.92% id in 173 aa, and to Porphyromonas gingivalis W83 RNA polymerase sigma-70 factor, ECF subfamily PG0214 SWALL:AAQ65445 (EMBL:AE017172) (166 aa) fasta scores: E(): 4.7e-15, 38.27% id in 162 aa; putative RNA polymerase ECF-type sigma factor 1923860 3286191 BF9343_1568 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_211287.1 1923339 R 272559 CDS YP_211288.1 60681144 3286192 complement(1924014..1925000) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative oxidoreductase BT0322 SWALL:Q8AAZ0 (EMBL:AE016927) (324 aa) fasta scores: E(): 1.4e-125, 91.35% id in 324 aa, and to Oceanobacillus iheyensis oxidoreductase ob3261 SWALL:Q8ELG6 (EMBL:AP004604) (324 aa) fasta scores: E(): 3.6e-62, 50.15% id in 325 aa; putative GFO/IDH/MocA-family oxidoreductase 1925000 3286192 BF9343_1569 Bacteroides fragilis NCTC 9343 putative GFO/IDH/MocA-family oxidoreductase YP_211288.1 1924014 R 272559 CDS YP_211289.1 60681145 3286193 complement(1925239..1926063) 1 NC_003228.3 Similar to Neisseria gonorrhoeae histidine-binding protein precursor HisJ SWALL:HISJ_NEIGO (SWALL:Q06758) (268 aa) fasta scores: E(): 8.8e-06, 25.92% id in 216 aa, and to Bacteroides thetaiotaomicron glutamine ABC transporter, periplasmic glutamine-binding protein BT0327 SWALL:Q8AAY5 (EMBL:AE016927) (279 aa) fasta scores: E(): 6.7e-75, 76.2% id in 269 aa, and to Porphyromonas gingivalis W83 conserved domain protein PG0363 SWALL:AAQ65573 (EMBL:AE017173) (275 aa) fasta scores: E(): 5.1e-25, 35.29% id in 238 aa; putative solute-binding protein precursor 1926063 3286193 BF9343_1570 Bacteroides fragilis NCTC 9343 putative solute-binding protein precursor YP_211289.1 1925239 R 272559 CDS YP_211290.1 60681146 3286197 complement(1926072..1928126) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0328 SWALL:Q8AAY4 (EMBL:AE016927) (680 aa) fasta scores: E(): 1.1e-201, 72.32% id in 683 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0362 SWALL:AAQ65572 (EMBL:AE017173) (722 aa) fasta scores: E(): 5.2e-46, 35.35% id in 659 aa; hypothetical protein 1928126 3286197 BF9343_1571 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211290.1 1926072 R 272559 CDS YP_211291.1 60681147 3286196 complement(1928237..1928779) 1 NC_003228.3 Similar to Methanococcus jannaschii 2-oxoglutarate synthase subunit KorC or MJ0536 SWALL:KORC_METJA (SWALL:Q57956) (187 aa) fasta scores: E(): 1.3e-12, 31.31% id in 182 aa, and to Archaeoglobus fulgidus 2-oxoglutarate synthase subunit KorC or KorG or AF0471 SWALL:KORC_ARCFU (SWALL:O29779) (187 aa) fasta scores: E(): 5.8e-08, 32.2% id in 177 aa; putative 2-oxoglutarate synthase subunit 1928779 3286196 BF9343_1572 Bacteroides fragilis NCTC 9343 putative 2-oxoglutarate synthase subunit YP_211291.1 1928237 R 272559 CDS YP_211292.1 60681148 3285751 complement(1928798..1929559) 1 NC_003228.3 Similar to Pyrococcus horikoshii ferredoxin oxidoreductase beta subunit PH1661 SWALL:O59340 (EMBL:AP000006) (281 aa) fasta scores: E(): 1.5e-20, 36.9% id in 233 aa, and to Methanobacterium thermoautotrophicum 2-oxoglutarate synthase subunit KorB or MTH1034 SWALL:KORB_METTH (SWALL:O27113) (286 aa) fasta scores: E(): 1.6e-14, 32.27% id in 220 aa; putative 2-oxoglutarate synthase subunit 1929559 3285751 BF9343_1573 Bacteroides fragilis NCTC 9343 putative 2-oxoglutarate synthase subunit YP_211292.1 1928798 R 272559 CDS YP_211293.1 60681149 3286172 complement(1929656..1929829) 1 NC_003228.3 no significant database matches; hypothetical protein 1929829 3286172 BF9343_1574 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211293.1 1929656 R 272559 CDS YP_211294.1 60681150 3286174 complement(1929840..1930922) 1 NC_003228.3 Similar to Helicobacter pylori OorA subunit of 2-oxoglutarate:acceptor oxidoreductase OorA SWALL:O68228 (EMBL:AF021094) (371 aa) fasta scores: E(): 6.1e-18, 33.61% id in 354 aa, and to Porphyromonas gingivalis W83 2-oxoglutarate oxidoreductase, alpha subunit PG1812 SWALL:AAQ66810 (EMBL:AE017178) (353 aa) fasta scores: E(): 6.2e-104, 75.35% id in 353 aa, and to Bacteroides thetaiotaomicron ketoisovalerate oxidoreductase subunit VorB BT0331 SWALL:Q8AAY1 (EMBL:AE016927) (295 aa) fasta scores: E(): 1.6e-101, 90.16% id in 295 aa; putative 2-oxoglutarate oxidoreductase 1930922 3286174 BF9343_1575 Bacteroides fragilis NCTC 9343 putative 2-oxoglutarate oxidoreductase YP_211294.1 1929840 R 272559 CDS YP_211295.1 60681151 3286173 complement(1930934..1931161) 1 NC_003228.3 Similar to Methanobacterium thermoautotrophicum ketoisovalerate oxidoreductase subunit VorC or MTH703 SWALL:VORC_METTH (SWALL:O26799) (79 aa) fasta scores: E(): 5.3e-07, 35.21% id in 71 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0333 SWALL:Q8AAX9 (EMBL:AE016927) (75 aa) fasta scores: E(): 2.4e-25, 89.33% id in 75 aa, and to Porphyromonas gingivalis W83 ferredoxin, 4Fe-4S PG1813 SWALL:AAQ66811 (EMBL:AE017178) (75 aa) fasta scores: E(): 2.2e-17, 65.33% id in 75 aa; putative ferredoxin 1931161 3286173 BF9343_1576 Bacteroides fragilis NCTC 9343 putative ferredoxin YP_211295.1 1930934 R 272559 CDS YP_211296.1 60681152 3286186 complement(1931180..1931455) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0334 SWALL:Q8AAX8 (EMBL:AE016927) (93 aa) fasta scores: E(): 2.1e-19, 63.44% id in 93 aa; hypothetical protein 1931455 3286186 BF9343_1577 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211296.1 1931180 R 272559 CDS YP_211297.1 60681153 3288887 complement(1931765..1932199) 1 NC_003228.3 Similar to Escherichia coli ribose 5-phosphate isomerase B RpiB or B4090 SWALL:RPIB_ECOLI (SWALL:P37351) (149 aa) fasta scores: E(): 2.9e-21, 45.39% id in 141 aa, and to Bacteroides thetaiotaomicron ribose 5-phosphate isomerase B BT0346 SWALL:Q8AAW6 (EMBL:AE016927) (144 aa) fasta scores: E(): 4.2e-53, 85.41% id in 144 aa, and to Porphyromonas gingivalis W83 ribose 5-phosphate isomerase B, putative PG1747 SWALL:AAQ66750 (EMBL:AE017178) (145 aa) fasta scores: E(): 5e-36, 61.11% id in 144 aa; putative ribose 5-phosphate isomerase 1932199 rpiB 3288887 rpiB Bacteroides fragilis NCTC 9343 putative ribose 5-phosphate isomerase YP_211297.1 1931765 R 272559 CDS YP_211298.1 60681154 3286524 complement(1932282..1934291) 1 NC_003228.3 Similar to Escherichia coli transketolase 2 TktB or b2465 SWALL:TKT2_ECOLI (SWALL:P33570) (667 aa) fasta scores: E(): 3.3e-80, 39.52% id in 678 aa, and to Bacteroides thetaiotaomicron transketolase BT0347 SWALL:Q8AAW5 (EMBL:AE016927) (669 aa) fasta scores: E(): 0, 88.64% id in 669 aa, and to Porphyromonas gingivalis W83 transketolase Tkt or PG1748 SWALL:AAQ66751 (EMBL:AE017178) (675 aa) fasta scores: E(): 1.7e-192, 74.96% id in 675 aa; putative transketolase 1934291 tktB 3286524 tktB Bacteroides fragilis NCTC 9343 putative transketolase YP_211298.1 1932282 R 272559 CDS YP_211299.1 60681155 3287973 complement(1934446..1935600) 1 NC_003228.3 Similar to Lactobacillus casei galactokinase GalK SWALL:GAL1_LACCA (SWALL:O84902) (387 aa) fasta scores: E(): 2.3e-38, 35.38% id in 390 aa, and to Bacteroides thetaiotaomicron galactokinase BT0370 SWALL:Q8AAU4 (EMBL:AE016927) (384 aa) fasta scores: E(): 2.1e-143, 93.73% id in 383 aa, and to Porphyromonas gingivalis W83 galactokinase GalK or PG1633 SWALL:AAQ66657 (EMBL:AE017177) (384 aa) fasta scores: E(): 2.6e-123, 79.63% id in 383 aa; putative galactokinase 1935600 galK 3287973 galK Bacteroides fragilis NCTC 9343 putative galactokinase YP_211299.1 1934446 R 272559 CDS YP_211300.1 60681156 3286177 complement(1935636..1936961) 1 NC_003228.3 Similar to Brucella abortus glucose/galactose transporter GluP SWALL:GLUP_BRUAB (SWALL:Q44623) (412 aa) fasta scores: E(): 3.2e-05, 30.52% id in 439 aa, and to Porphyromonas gingivalis W83 sugar transporter PG2170 SWALL:AAQ67119 (EMBL:AE017179) (429 aa) fasta scores: E(): 1.4e-100, 62.41% id in 439 aa, and to Bacteroides thetaiotaomicron glucose/galactose transporter BT0371 SWALL:Q8AAU3 (EMBL:AE016927) (436 aa) fasta scores: E(): 1e-91, 57.97% id in 445 aa; putative transmembrane glucose/galactose transporter 1936961 3286177 BF9343_1581 Bacteroides fragilis NCTC 9343 putative transmembrane glucose/galactose transporter YP_211300.1 1935636 R 272559 CDS YP_211301.1 60681157 3286163 complement(1937012..1938136) 1 NC_003228.3 Similar to Acinetobacter calcoaceticus aldose 1-epimerase precursor Mro SWALL:GALM_ACICA (SWALL:P05149) (381 aa) fasta scores: E(): 1e-53, 41.62% id in 382 aa, and to Bacteroides thetaiotaomicron aldose 1-epimerase precursor BT0372 SWALL:Q8AAU2 (EMBL:AE016927) (365 aa) fasta scores: E(): 6.6e-133, 89.31% id in 365 aa, and to Bacteroides thetaiotaomicron aldose 1-epimerase precursor BT3529 SWALL:Q8A1X9 (EMBL:AE016941) (377 aa) fasta scores: E(): 1.1e-63, 49.58% id in 357 aa; putative aldose 1-epimerase precursor 1938136 3286163 BF9343_1582 Bacteroides fragilis NCTC 9343 putative aldose 1-epimerase precursor YP_211301.1 1937012 R 272559 CDS YP_211302.1 60681158 3286187 1938373..1939344 1 NC_003228.3 Similar to Bacillus subtilis mannose-6-phosphate isomerase Pmi or BSU35790 SWALL:MANA_BACSU (SWALL:P39841) (316 aa) fasta scores: E(): 3.9e-29, 32.71% id in 324 aa, and to Bacteroides thetaiotaomicron mannose-6-phosphate isomerase BT0373 SWALL:Q8AAU1 (EMBL:AE016927) (323 aa) fasta scores: E(): 6e-112, 88.54% id in 323 aa, and to Porphyromonas gingivalis W83 mannose-6-phosphate isomerase, class I ManA or PG0468 SWALL:AAQ65664 (EMBL:AE017173) (336 aa) fasta scores: E(): 3.9e-64, 52.77% id in 324 aa; putative mannose-6-phosphate isomerase 1939344 3286187 BF9343_1583 Bacteroides fragilis NCTC 9343 putative mannose-6-phosphate isomerase YP_211302.1 1938373 D 272559 CDS YP_211303.1 60681159 3286164 complement(1939410..1939673) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0406 SWALL:Q8AAQ8 (EMBL:AE016927) (85 aa) fasta scores: E(): 1.7e-15, 62.19% id in 82 aa; hypothetical protein 1939673 3286164 BF9343_1584 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211303.1 1939410 R 272559 CDS YP_211304.1 60681160 3286159 complement(1939678..1940043) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0407 SWALL:AAO75514 (EMBL:AE016927) (119 aa) fasta scores: E(): 3.9e-33, 83.05% id in 118 aa; putative transmembrane protein 1940043 3286159 BF9343_1585 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211304.1 1939678 R 272559 CDS YP_211305.1 60681161 3286167 complement(1940070..1940279) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0408 SWALL:AAO75515 (EMBL:AE016927) (69 aa) fasta scores: E(): 6.9e-20, 97.01% id in 67 aa; hypothetical protein 1940279 3286167 BF9343_1586 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211305.1 1940070 R 272559 CDS YP_211306.1 60681162 3286166 complement(1940577..1941860) 1 NC_003228.3 Similar to Escherichia coli putative ATP-dependent RNA helicase RhlE or B0797 SWALL:RHLE_ECOLI (SWALL:P25888) (454 aa) fasta scores: E(): 7.8e-73, 48.83% id in 430 aa, and to Chlorobium tepidum ATP-dependent RNA helicase DeaD Dead-2 or CT1034 SWALL:Q8KDL3 (EMBL:AE012866) (414 aa) fasta scores: E(): 4.5e-93, 60.38% id in 414 aa, and to Bacteroides thetaiotaomicron putative ATP-dependent RNA helicase BT1885 SWALL:Q8A6J6 (EMBL:AE016933) (374 aa) fasta scores: E(): 3.8e-85, 64.03% id in 367 aa; putative ATP-dependent RNA helicase 1941860 3286166 BF9343_1587 Bacteroides fragilis NCTC 9343 putative ATP-dependent RNA helicase YP_211306.1 1940577 R 272559 CDS YP_211307.1 60681163 3286171 1942051..1942821 1 NC_003228.3 Similar to Agrobacterium tumefaciens serine dehydrogenase Sdh SWALL:Q9KWN1 (EMBL:AB032242) (249 aa) fasta scores: E(): 9.4e-33, 43.13% id in 255 aa, and to Bacteroides thetaiotaomicron putative short-chain dehydrogenase BT0409 SWALL:Q8AAQ5 (EMBL:AE016927) (256 aa) fasta scores: E(): 1.8e-82, 87% id in 254 aa, and to Anabaena sp. hypothetical protein ALL0475 SWALL:Q8YZI5 (EMBL:AP003582) (257 aa) fasta scores: E(): 4.3e-52, 54.54% id in 253 aa; putative short-chain dehydrogenase 1942821 3286171 BF9343_1588 Bacteroides fragilis NCTC 9343 putative short-chain dehydrogenase YP_211307.1 1942051 D 272559 CDS YP_211308.1 60681164 3286168 1942936..1943433 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0410 SWALL:Q8AAQ4 (EMBL:AE016927) (164 aa) fasta scores: E(): 1.1e-48, 86.66% id in 165 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1341 SWALL:AAQ66407 (EMBL:AE017176) (184 aa) fasta scores: E(): 7.3e-15, 42.42% id in 165 aa; hypothetical protein 1943433 3286168 BF9343_1589 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211308.1 1942936 D 272559 CDS YP_211309.1 60681165 3286137 1943784..1944563 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2972 SWALL:Q8A3I2 (EMBL:AE016938) (257 aa) fasta scores: E(): 2.5e-66, 63.28% id in 256 aa, and to Synechocystis sp. hypothetical protein SLR1117 SWALL:P72630 (EMBL:D90899) (253 aa) fasta scores: E(): 4.1e-34, 41.7% id in 247 aa; hypothetical protein 1944563 3286137 BF9343_1590 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211309.1 1943784 D 272559 CDS YP_211310.1 60681166 3286143 complement(1944816..1947491) 1 NC_003228.3 Similar to Rhizobium meliloti beta-galactosidase LacZ SWALL:BGAL_RHIME (SWALL:Q59750) (755 aa) fasta scores: E(): 2.4e-19, 26.3% id in 768 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT4684 SWALL:Q89YP7 (EMBL:AE016946) (895 aa) fasta scores: E(): 0, 65.87% id in 888 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT0983 SWALL:Q8A934 (EMBL:AE016930) (882 aa) fasta scores: E(): 8e-111, 48.55% id in 900 aa; putative beta-galactosidase 1947491 3286143 BF9343_1591 Bacteroides fragilis NCTC 9343 putative beta-galactosidase YP_211310.1 1944816 R 272559 CDS YP_211311.1 60681167 3286150 1948129..1948947 1 NC_003228.3 Similar to Salmonella typhimurium CysQ protein or STM4404 SWALL:CYSQ_SALTY (SWALL:P26264) (246 aa) fasta scores: E(): 4e-17, 46.33% id in 259 aa, and to Bacteroides thetaiotaomicron CysQ, sulfite synthesis pathway protein BT0411 SWALL:Q8AAQ3 (EMBL:AE016927) (268 aa) fasta scores: E(): 5.4e-77, 76.22% id in 265 aa, and to Helicobacter hepaticus hypothetical protein CysQ or hh1440 SWALL:AAP78037 (EMBL:AE017148) (266 aa) fasta scores: E(): 2.8e-27, 40.65% id in 246 aa; putative sulfite synthesis pathway protein 1948947 3286150 BF9343_1592 Bacteroides fragilis NCTC 9343 putative sulfite synthesis pathway protein YP_211311.1 1948129 D 272559 CDS YP_211312.1 60681168 3286145 1948968..1950524 1 NC_003228.3 Similar to Photorhabdus temperata YfbS SWALL:Q8GLH4 (EMBL:AY137386) (585 aa) fasta scores: E(): 6.6e-15, 25.68% id in 584 aa, and to Bacteroides thetaiotaomicron putative Na+/sulfate symporter BT0412 SWALL:Q8AAQ2 (EMBL:AE016927) (517 aa) fasta scores: E(): 1.4e-176, 87.83% id in 518 aa, and to Lactobacillus plantarum sodium/sulfate symport protein LP_1385 SWALL:Q88X57 (EMBL:AL935256) (591 aa) fasta scores: E(): 4.9e-27, 29.68% id in 593 aa; possible Na+/sulfite symporter 1950524 3286145 BF9343_1593 Bacteroides fragilis NCTC 9343 possible Na+/sulfite symporter YP_211312.1 1948968 D 272559 CDS YP_211313.1 60681169 3287509 1950553..1951161 1 NC_003228.3 Similar to Salmonella typhimurium, and Salmonella typhi adenylylsulfate kinase CysC or STM2933 or STY3058 or t2834 SWALL:CYSC_SALTY (SWALL:Q8XF34) (200 aa) fasta scores: E(): 7.2e-31, 53.37% id in 178 aa, and to Bacteroides thetaiotaomicron putative adenylylsulfate kinase BT0413 SWALL:Q8AAQ1 (EMBL:AE016927) (201 aa) fasta scores: E(): 6.4e-64, 87.5% id in 200 aa, and to Clostridium acetobutylicum adenylylsulfate kinase CysC or CAC0103 SWALL:CYSC_CLOAB (SWALL:Q97MT8) (200 aa) fasta scores: E(): 1.7e-33, 53.37% id in 178 aa; putative adenylylsulfate kinase 1951161 cysC 3287509 cysC Bacteroides fragilis NCTC 9343 putative adenylylsulfate kinase YP_211313.1 1950553 D 272559 CDS YP_211314.1 60681170 3287496 1951189..1952100 1 NC_003228.3 Similar to Pseudomonas aeruginosa sulfate adenylyltransferase subunit 2 CysD or pa4443 SWALL:CYSD_PSEAE (SWALL:O50273) (305 aa) fasta scores: E(): 2.6e-85, 69.2% id in 302 aa, and to Bacteroides thetaiotaomicron sulfate adenylyltransferase subunit 2 BT0414 SWALL:Q8AAQ0 (EMBL:AE016927) (302 aa) fasta scores: E(): 1.1e-118, 96.34% id in 301 aa, and to Vibrio cholerae sulfate adenylyltransferase subunit 2 CysD or vc2560 SWALL:CYSD_VIBCH (SWALL:Q9KP19) (302 aa) fasta scores: E(): 7.1e-88, 70.76% id in 301 aa; putative sulfate adenylyltransferase subunit 2 1952100 cysD 3287496 cysD Bacteroides fragilis NCTC 9343 putative sulfate adenylyltransferase subunit 2 YP_211314.1 1951189 D 272559 CDS YP_211315.1 60681171 3285295 1952112..1953542 1 NC_003228.3 Similar to Pseudomonas aeruginosa CysN/CysC bifunctional enzyme [includes: sulfate adenylyltransferase subunit 1 (sulfate adenylate transferase)(sat)(atp-sulfurylase large subunit);adenylylsulfate kinase (aps kinase)(atp adenosine-5'-phosphosulfate 3'-phosphotransferase)] CysNC or CysN or pa4442 SWALL:CYSN_PSEAE (SWALL:O50274) (633 aa) fasta scores: E(): 9.8e-93, 62.41% id in 423 aa, and to Bacteroides thetaiotaomicron BT0415 SWALL:AAO75522 (EMBL:AE016927) (485 aa) fasta scores: E(): 2.4e-129, 87.44% id in 486 aa, and to Pseudomonas syringae sulfate adenylate transferase, subunit 1/adenylylsulfate kinase CysN/C or PSPTO4432 SWALL:AAO57881 (EMBL:AE016872) (632 aa) fasta scores: E(): 1.1e-91, 61.41% id in 425 aa; putative sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 1953542 cysN 3285295 cysN Bacteroides fragilis NCTC 9343 putative sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_211315.1 1952112 D 272559 CDS YP_211316.1 60681172 3286155 1953613..1954719 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0416 SWALL:AAO75523 (EMBL:AE016927) (368 aa) fasta scores: E(): 9.2e-141, 89.67% id in 368 aa, and to Mycobacterium tuberculosis, and Mycobacterium bovis hypothetical protein rv2267c/mt2329/mb2290c rv2267c or mt2329 or MTCY339.43 or MB2290C SWALL:YM67_MYCTU (SWALL:Q50695) (388 aa) fasta scores: E(): 1.6e-26, 28.34% id in 321 aa; possible sulfotransferase 1954719 3286155 BF9343_1597 Bacteroides fragilis NCTC 9343 possible sulfotransferase YP_211316.1 1953613 D 272559 CDS YP_211317.1 60681173 3286154 1954734..1955696 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0417 SWALL:AAO75524 (EMBL:AE016927) (322 aa) fasta scores: E(): 2.9e-95, 75.77% id in 322 aa; hypothetical protein 1955696 3286154 BF9343_1598 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211317.1 1954734 D 272559 CDS YP_211318.1 60681174 3286099 complement(1955966..1956364) 1 NC_003228.3 no significant database matches; hypothetical protein 1956364 3286099 BF9343_1599 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211318.1 1955966 R 272559 CDS YP_211319.1 60681175 3286158 complement(1956588..1957688) 1 NC_003228.3 Similar to Bacteroides fragilis major outer membrane protein OmpA SWALL:Q9AES1 (EMBL:AY028459) (395 aa) fasta scores: E(): 9.4e-28, 32.45% id in 379 aa, and to Bacteroides thetaiotaomicron outer membrane porin F precursor BT0418 SWALL:AAO75525 (EMBL:AE016927) (372 aa) fasta scores: E(): 1.1e-28, 36.78% id in 386 aa; putative outer membrane protein 1957688 3286158 BF9343_1600 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211319.1 1956588 R 272559 CDS YP_211320.1 60681176 3285752 complement(1957711..1958526) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0292 SWALL:Q8AB20 (EMBL:AE016927) (249 aa) fasta scores: E(): 5.8e-13, 30.95% id in 252 aa; hypothetical protein 1958526 3285752 BF9343_1601 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211320.1 1957711 R 272559 CDS YP_211321.1 60681177 3286098 complement(1958578..1960797) 1 NC_003228.3 no significant database matches; hypothetical protein 1960797 3286098 BF9343_1602 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211321.1 1958578 R 272559 CDS YP_211322.1 60681178 3286103 complement(1960808..1961752) 1 NC_003228.3 Similar to C-terminus of Bacteroides thetaiotaomicron hypothetical protein BT0293 SWALL:AAO75400 (EMBL:AE016927) (410 aa) fasta scores: E(): 5.2e-18, 27.59% id in 279 aa; hypothetical protein 1961752 3286103 BF9343_1603 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211322.1 1960808 R 272559 CDS YP_211323.1 60681179 3286117 1962055..1963275 1 NC_003228.3 Similar to Bacteroides fragilis Integrase Int SWALL:O05723 (EMBL:U75371) (372 aa) fasta scores: E(): 1.9e-23, 32.63% id in 380 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium Integrase int SWALL:Q9FDI2 (EMBL:AF261825) (405 aa) fasta scores: E(): 1e-30, 32.31% id in 359 aa, and to Prevotella loescheii hypothetical protein SWALL:Q93GE9 (EMBL:AF252852) (418 aa) fasta scores: E(): 2e-28, 36.22% id in 334 aa; putative bacteriophage integrase 1963275 3286117 BF9343_1604 Bacteroides fragilis NCTC 9343 putative bacteriophage integrase YP_211323.1 1962055 D 272559 CDS YP_211324.1 60681180 3286105 1964016..1965242 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0293 SWALL:Q8AB19 (EMBL:AE016927) (410 aa) fasta scores: E(): 9.9e-29, 29.56% id in 416 aa; hypothetical protein 1965242 3286105 BF9343_1605 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211324.1 1964016 D 272559 CDS YP_211325.1 60681181 3286128 1965253..1966329 1 NC_003228.3 Limited similarity to Agrobacterium tumefaciens ABC transporter, substrate binding protein HmuT or atu2460 or agr_c_4467 SWALL:Q8UCM3 (EMBL:AE009193) (312 aa) fasta scores: E(): 1.9, 23.81% id in 273 aa; hypothetical protein 1966329 3286128 BF9343_1606 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211325.1 1965253 D 272559 CDS YP_211326.1 60681182 3286122 1966397..1967146 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0292 SWALL:AAO75399 (EMBL:AE016927) (249 aa) fasta scores: E(): 7.3e-13, 29.83% id in 248 aa; hypothetical protein 1967146 3286122 BF9343_1607 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211326.1 1966397 D 272559 CDS YP_211327.1 60681183 3287056 1967208..1968326 1 NC_003228.3 Similar to Bacteroides fragilis major outer membrane protein OmpA SWALL:Q9AES1 (EMBL:AY028459) (395 aa) fasta scores: E(): 5.6e-31, 34.74% id in 377 aa, and to Bacteroides thetaiotaomicron outer membrane porin F precursor BT0418 SWALL:Q8AAP6 (EMBL:AE016927) (372 aa) fasta scores: E(): 5.6e-30, 37.24% id in 384 aa, and to Bacteroides thetaiotaomicron major outer membrane protein OmpA BT3852 SWALL:Q8A119 (EMBL:AE016942) (394 aa) fasta scores: E(): 4.7e-27, 33.24% id in 367 aa; putative outer membrane protein 1968326 3287056 BF9343_1608 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211327.1 1967208 D 272559 CDS YP_211328.1 60681184 3288082 1968448..1968864 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative holliday junction resolvase BT0419 SWALL:RUVX_BACTN (SWALL:Q8AAP5) (138 aa) fasta scores: E(): 6e-41, 89.13% id in 138 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2202 SWALL:AAQ67144 (EMBL:AE017179) (138 aa) fasta scores: E(): 7.3e-27, 61.94% id in 134 aa, and to Streptococcus mutans putative holliday junction resolvase SMU.2078C SWALL:RUVX_STRMU (SWALL:Q8DRX8) (139 aa) fasta scores: E(): 6.4e-12, 36.49% id in 137 aa; putative Holliday junction resolvase 1968864 ruvX 3288082 ruvX Bacteroides fragilis NCTC 9343 putative Holliday junction resolvase YP_211328.1 1968448 D 272559 CDS YP_211329.1 60681185 3285455 1968900..1969454 1 NC_003228.3 Similar to Leptospira interrogans peptide deformylase Def or Pdf or la2438 SWALL:DEF_LEPIN (SWALL:Q93LE9) (178 aa) fasta scores: E(): 6.7e-16, 38.6% id in 158 aa, and to Bacteroides thetaiotaomicron peptide deformylase BT0420 SWALL:Q8AAP4 (EMBL:AE016927) (184 aa) fasta scores: E(): 3.3e-59, 88.58% id in 184 aa, and to Porphyromonas gingivalis W83 polypeptide deformylase Def or PG2201 SWALL:AAQ67143 (EMBL:AE017179) (189 aa) fasta scores: E(): 2.9e-43, 65.19% id in 181 aa; putative peptide deformylase 1969454 def 3285455 def Bacteroides fragilis NCTC 9343 putative peptide deformylase YP_211329.1 1968900 D 272559 CDS YP_211330.1 60681186 3286079 complement(1969564..1970781) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:Q8AA04 (EMBL:AE016928) (408 aa) fasta scores: E(): 1.3e-07, 25% id in 372 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:Q8AA01 (EMBL:AE016928) (382 aa) fasta scores: E(): 1.5e-06, 23.29% id in 425 aa; hypothetical protein 1970781 3286079 BF9343_1611 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211330.1 1969564 R 272559 CDS YP_211331.1 60681187 3286080 1971084..1973132 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron tetratricopeptide repeat BT0421 SWALL:Q8AAP3 (EMBL:AE016927) (683 aa) fasta scores: E(): 1.4e-197, 76.81% id in 690 aa, and to Porphyromonas gingivalis W83 Tpr domain protein PG2200 SWALL:AAQ67142 (EMBL:AE017179) (695 aa) fasta scores: E(): 1.5e-69, 40.66% id in 691 aa, and to Prochlorococcus marinus Tpr repeat precursor pmt0296 SWALL:CAE20471 (EMBL:BX572095) (1057 aa) fasta scores: E(): 6.8e-33, 31.02% id in 622 aa; putative exported Tpr repeat-family protein 1973132 3286080 BF9343_1612 Bacteroides fragilis NCTC 9343 putative exported Tpr repeat-family protein YP_211331.1 1971084 D 272559 CDS YP_211332.1 60681188 3287499 1973213..1975153 1 NC_003228.3 Similar to Bacillus subtilis threonyl-tRNA synthetase 1 ThrS or ThrSV or BSU28950 SWALL:SYT1_BACSU (SWALL:P18255) (643 aa) fasta scores: E(): 2.6e-116, 47.39% id in 633 aa, and to Bacteroides thetaiotaomicron threonyl-tRNA synthetase BT0422 SWALL:Q8AAP2 (EMBL:AE016927) (646 aa) fasta scores: E(): 0, 95.04% id in 646 aa, and to Porphyromonas gingivalis W83 threonyl-tRNA synthetase ThrS or PG0992 SWALL:AAQ66115 (EMBL:AE017175) (653 aa) fasta scores: E(): 3.8e-205, 76.04% id in 647 aa; putative threonyl-tRNA synthetase 1975153 thrS 3287499 thrS Bacteroides fragilis NCTC 9343 putative threonyl-tRNA synthetase YP_211332.1 1973213 D 272559 CDS YP_211333.1 60681189 3289133 1975272..1975883 1 NC_003228.3 Similar to Bacillus stearothermophilus translation initiation factor IF-3 InfC SWALL:IF3_BACST (SWALL:P03000) (171 aa) fasta scores: E(): 6.9e-23, 47.56% id in 164 aa, and to Bacteroides thetaiotaomicron translation initiation factor IF-3 BT0423 SWALL:Q8AAP1 (EMBL:AE016927) (185 aa) fasta scores: E(): 7.5e-58, 93.71% id in 175 aa, and to Porphyromonas gingivalis W83 translation initiation factor IF-3 InfC or PG0991 SWALL:AAQ66114 (EMBL:AE017175) (201 aa) fasta scores: E(): 3.1e-46, 69.45% id in 203 aa; putative translation initiation factor IF-3 1975883 infC 3289133 infC Bacteroides fragilis NCTC 9343 putative translation initiation factor IF-3 YP_211333.1 1975272 D 272559 CDS YP_211334.1 60681190 3288814 1975949..1976146 1 NC_003228.3 Similar to Bacillus subtilis 50S ribosomal protein L35 RpmI or BSU28860 SWALL:RL35_BACSU (SWALL:P55874) (65 aa) fasta scores: E(): 8.1e-10, 50% id in 62 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L35 BT0424 SWALL:Q8AAP0 (EMBL:AE016927) (65 aa) fasta scores: E(): 2.8e-25, 98.46% id in 65 aa, and to Porphyromonas gingivalis W83 ribosomal protein L35 RpmI or PG0990 SWALL:AAQ66113 (EMBL:AE017175) (65 aa) fasta scores: E(): 1e-16, 70.76% id in 65 aa; putative 50S ribosomal protein L35 1976146 rpmI 3288814 rpmI Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L35 YP_211334.1 1975949 D 272559 CDS YP_211335.1 60681191 3288853 1976247..1976597 1 NC_003228.3 Similar to Pseudomonas syringae 50S ribosomal protein L20 RplT or PSPTO2381 SWALL:RL20_PSESM (SWALL:P52828) (118 aa) fasta scores: E(): 5.2e-23, 60.52% id in 114 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L20 RplT or BT0425 SWALL:RL20_BACTN (SWALL:Q8AAN9) (116 aa) fasta scores: E(): 8.6e-45, 98.27% id in 116 aa, and to Porphyromonas gingivalis W83 ribosomal protein L20 RplT or PG0989 SWALL:AAQ66112 (EMBL:AE017175) (115 aa) fasta scores: E(): 1.8e-40, 87.71% id in 114 aa; putative 50S ribosomal protein L20 1976597 rplT 3288853 rplT Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L20 YP_211335.1 1976247 D 272559 CDS YP_211336.1 60681192 3286086 1977026..1977817 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0426 SWALL:Q8AAN8 (EMBL:AE016927) (256 aa) fasta scores: E(): 5.7e-69, 62.45% id in 253 aa, and to Clostridium perfringens hypothetical protein CPE2094 SWALL:Q8XIM1 (EMBL:AP003192) (259 aa) fasta scores: E(): 6.9e-16, 26.64% id in 259 aa, and to Methanosarcina mazei ferredoxin MM3214 SWALL:Q8PS68 (EMBL:AE013580) (282 aa) fasta scores: E(): 2.6e-14, 26.86% id in 268 aa; putative ferredoxin 1977817 3286086 BF9343_1617 Bacteroides fragilis NCTC 9343 putative ferredoxin YP_211336.1 1977026 D 272559 CDS YP_211337.1 60681193 3286085 complement(1977892..1978461) 1 NC_003228.3 Similar to Bacillus subtilis xanthine phosphoribosyltransferase Xpt or BSU22070 SWALL:XPT_BACSU (SWALL:P42085) (194 aa) fasta scores: E(): 1e-29, 48.12% id in 187 aa, and to Bacteroides thetaiotaomicron xanthine phosphoribosyltransferase BT0427 SWALL:Q8AAN7 (EMBL:AE016927) (190 aa) fasta scores: E(): 4.2e-63, 92.59% id in 189 aa, and to Porphyromonas gingivalis W83 xanthine phosphoribosyltransferase Xpt or PG2147 SWALL:AAQ67100 (EMBL:AE017179) (193 aa) fasta scores: E(): 8.4e-50, 73.01% id in 189 aa; putative xanthine phosphoribosyltransferase 1978461 3286085 BF9343_1618 Bacteroides fragilis NCTC 9343 putative xanthine phosphoribosyltransferase YP_211337.1 1977892 R 272559 CDS YP_211338.1 60681194 3286267 complement(1978547..1979854) 1 NC_003228.3 Similar to Escherichia coli phenylacetate-coenzyme A ligase PaaK or B1398 SWALL:PAAK_ECOLI (SWALL:P76085) (437 aa) fasta scores: E(): 3.7e-70, 46.33% id in 436 aa, and to Bacteroides thetaiotaomicron phenylacetate-coenzyme A ligase BT0428 SWALL:Q8AAN6 (EMBL:AE016927) (435 aa) fasta scores: E(): 7.3e-158, 92.64% id in 435 aa, and to Wolinella succinogenes coenzyme F390 synthetase WS0932 SWALL:CAE10036 (EMBL:BX571659) (428 aa) fasta scores: E(): 2.1e-87, 51.87% id in 426 aa; putative phenylacetate-coenzyme A ligase 1979854 paaK2 3286267 paaK2 Bacteroides fragilis NCTC 9343 putative phenylacetate-coenzyme A ligase YP_211338.1 1978547 R 272559 CDS YP_211339.1 60681195 3286096 complement(1979959..1980543) 1 NC_003228.3 Similar to Pyrococcus kodakaraensis indolepyruvate oxidoreductase subunit IorB SWALL:IORB_PYRKO (SWALL:O07836) (226 aa) fasta scores: E(): 9.4e-12, 33.72% id in 172 aa, and to Bacteroides thetaiotaomicron indolepyruvate oxidoreductase subunit IorB BT0429 SWALL:Q8AAN5 (EMBL:AE016927) (194 aa) fasta scores: E(): 4.4e-64, 91.75% id in 194 aa, and to Porphyromonas gingivalis W83 indolepyruvate ferredoxin oxidoreductase, beta subunit IorB or PG0674 SWALL:AAQ65849 (EMBL:AE017174) (197 aa) fasta scores: E(): 3.2e-40, 60% id in 190 aa; putative indolepyruvate oxidoreductase subunit 1980543 3286096 BF9343_1620 Bacteroides fragilis NCTC 9343 putative indolepyruvate oxidoreductase subunit YP_211339.1 1979959 R 272559 CDS YP_211340.1 60681196 3286091 complement(1980547..1982139) 1 NC_003228.3 Similar to Wolinella succinogenes indolepyruvate oxidoreductase subunit IorA .-.-iorindolepyruvate ferredoxin oxidoreductase alpha subunit ws0714 SWALL:CAE09839 (EMBL:BX571658) (617 aa) fasta scores: E(): 1.3e-44, 35.53% id in 546 aa, and to Bacteroides thetaiotaomicron indolepyruvate oxidoreductase subunit IorA BT0430 SWALL:Q8AAN4 (EMBL:AE016927) (530 aa) fasta scores: E(): 7.6e-203, 93.01% id in 530 aa, and to Porphyromonas gingivalis W83 indolepyruvate ferredoxin oxidoreductase, alpha subunit IorA or PG0675 SWALL:AAQ65850 (EMBL:AE017174) (535 aa) fasta scores: E(): 3.9e-141, 64.46% id in 529 aa; putative indolepyruvate oxidoreductase/indolepyruvate ferredoxin oxidoreductase 1982139 3286091 BF9343_1621 Bacteroides fragilis NCTC 9343 putative indolepyruvate oxidoreductase/indolepyruvate ferredoxin oxidoreductase YP_211340.1 1980547 R 272559 CDS YP_211341.1 60681197 3286054 complement(1982223..1983260) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with conserved domain BT0431 SWALL:Q8AAN3 (EMBL:AE016927) (345 aa) fasta scores: E(): 5.2e-108, 75.36% id in 345 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1694 SWALL:AAQ66708 (EMBL:AE017177) (364 aa) fasta scores: E(): 1.9e-50, 42.56% id in 343 aa, and to Bordetella bronchiseptica putative exported protein bb2636 SWALL:CAE33129 (EMBL:BX640445) (348 aa) fasta scores: E(): 2.8e-22, 28.9% id in 339 aa; putative aminodeoxychorismate lyase 1983260 3286054 BF9343_1622 Bacteroides fragilis NCTC 9343 putative aminodeoxychorismate lyase YP_211341.1 1982223 R 272559 CDS YP_211342.1 60681198 3286053 complement(1983418..1984296) 1 NC_003228.3 Similar to Homo sapiens endonuclease G, mitochondrial precursor EndoG SWALL:NUCG_HUMAN (SWALL:Q14249) (297 aa) fasta scores: E(): 2.6e-13, 34.88% id in 215 aa, and to Bacteroides thetaiotaomicron putative endonuclease bb0411 BT0432 SWALL:Q8AAN2 (EMBL:AE016927) (292 aa) fasta scores: E(): 8.1e-66, 56.74% id in 289 aa, and to Vibrio parahaemolyticus minor nuclease c1b isoform precursor vp0696 SWALL:Q87RT1 (EMBL:AP005075) (250 aa) fasta scores: E(): 7.7e-26, 35.8% id in 243 aa; putative endonuclease 1984296 3286053 BF9343_1623 Bacteroides fragilis NCTC 9343 putative endonuclease YP_211342.1 1983418 R 272559 CDS YP_211343.1 60681199 3286066 complement(1984891..1986453) 1 NC_003228.3 Similar to Bacteroides forsythus surface antigen BspA SWALL:O68831 (EMBL:AF054892) (1081 aa) fasta scores: E(): 1.1e-17, 32.88% id in 295 aa, and to Bacteroides thetaiotaomicron putative cell surface antigen BT1896 SWALL:AAO77003 (EMBL:AE016933) (413 aa) fasta scores: E(): 6.4e-26, 33.33% id in 411 aa, and to Trichomonas vaginalis putative surface protein BspAL1 SWALL:Q8MTI2 (EMBL:AY101349) (625 aa) fasta scores: E(): 7e-12, 29.29% id in 297 aa; putative surface antigen 1986453 3286066 BF9343_1624 Bacteroides fragilis NCTC 9343 putative surface antigen YP_211343.1 1984891 R 272559 CDS YP_211344.1 60681200 3286056 1987522..1989426 1 NC_003228.3 Similar to Staphylococcus aureus capsular polysaccharide biosynthesis protein Cap5D SWALL:P95698 (EMBL:U81973) (607 aa) fasta scores: E(): 5.9e-61, 36.14% id in 617 aa, and to Bacteroides thetaiotaomicron capsular polysaccharide biosynthesis protein CapD BT0378 SWALL:AAO75485 (EMBL:AE016927) (641 aa) fasta scores: E(): 1.4e-84, 43.16% id in 644 aa, and to Bacteroides thetaiotaomicron putative nucleoside-diphosphate sugar epimerases/dehydrase BT0598 SWALL:AAO75705 (EMBL:AE016928) (641 aa) fasta scores: E(): 7e-84, 43.16% id in 644 aa, and to Leptospira interrogans similar to capsular polysaccharide biosynthesis protein Lb170 SWALL:Q8EXN8 (EMBL:AE011605) (629 aa) fasta scores: E(): 1e-64, 37.05% id in 618 aa; putative capsular biosynthesis protein 1989426 3286056 BF9343_1625 Bacteroides fragilis NCTC 9343 putative capsular biosynthesis protein YP_211344.1 1987522 D 272559 CDS YP_211345.1 60681201 3286069 1989541..1992090 1 NC_003228.3 Similar to Vibrio cholerae DNA for O-antigen region genes OtnA SWALL:Q56658 (EMBL:X90547) (911 aa) fasta scores: E(): 1.6e-29, 27.43% id in 853 aa, and to Bacteroides thetaiotaomicron putative capsule polysaccharide export protein BT1356 SWALL:AAO76463 (EMBL:AE016931) (789 aa) fasta scores: E(): 2.8e-145, 51.85% id in 837 aa, and to Bacteroides thetaiotaomicron polysialic acid transport protein KpsD precursor BT1723 SWALL:AAO76830 (EMBL:AE016933) (789 aa) fasta scores: E(): 5.5e-144, 51.19% id in 840 aa, and to Bacteroides thetaiotaomicron polysialic acid transport protein KpsD precursor BT1654 SWALL:AAO76761 (EMBL:AE016932) (789 aa) fasta scores: E(): 9.2e-144, 50.83% id in 840 aa; putative capsule polysaccharide export protein 1992090 3286069 BF9343_1626 Bacteroides fragilis NCTC 9343 putative capsule polysaccharide export protein YP_211345.1 1989541 D 272559 CDS YP_211346.1 60681202 3286071 1992099..1993211 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1355 SWALL:AAO76462 (EMBL:AE016931) (379 aa) fasta scores: E(): 1.6e-52, 44.85% id in 379 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1722 SWALL:AAO76829 (EMBL:AE016933) (382 aa) fasta scores: E(): 2e-51, 44.01% id in 359 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1653 SWALL:AAO76760 (EMBL:AE016932) (365 aa) fasta scores: E(): 5.5e-49, 43.09% id in 355 aa, and limited similarity to Thermoanaerobacter tengcongensis capsular polysaccharide biosynthesis TTE0740 SWALL:Q8RBS1 (EMBL:AE013041) (293 aa) fasta scores: E(): 0.00032, 25.13% id in 183 aa; hypothetical protein 1993211 3286071 BF9343_1627 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211346.1 1992099 D 272559 CDS YP_211347.1 60681203 3285213 1993187..1993717 1 NC_003228.3 Similar to Bacteroides fragilis transcriptional regulator UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 1.9e-09, 27.77% id in 162 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1358 SWALL:AAO76465 (EMBL:AE016931) (190 aa) fasta scores: E(): 2e-16, 34.14% id in 164 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT2886 SWALL:AAO77992 (EMBL:AE016937) (168 aa) fasta scores: E(): 2.7e-15, 35.36% id in 164 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1725 SWALL:AAO76832 (EMBL:AE016933) (192 aa) fasta scores: E(): 1.3e-14, 35.52% id in 152 aa; putative LPS-related regulatory protein 1993717 3285213 BF9343_1628 Bacteroides fragilis NCTC 9343 putative LPS-related regulatory protein YP_211347.1 1993187 D 272559 CDS YP_211348.1 60681204 3286039 1993717..1994181 1 NC_003228.3 Similar to Leptospira interrogans conserved hypothetical protein La0093 SWALL:Q8F9U6 (EMBL:AE011200) (177 aa) fasta scores: E(): 4e-17, 41% id in 139 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4644 SWALL:Q9HVE8 (EMBL:AE004878) (157 aa) fasta scores: E(): 4.9e-17, 37.32% id in 142 aa, and to Pseudomonas putida conserved hypothetical protein Pp0748 SWALL:AAN66373 (EMBL:AE016776) (157 aa) fasta scores: E(): 1e-16, 38.06% id in 134 aa, and to Escherichia coli hypothetical protein from O antigen cluster WbuC protein SWALL:Q8GNE9 (EMBL:AF529080) (135 aa) fasta scores: E(): 7.5e-11, 29.1% id in 134 aa; Similar to Escherichia coli O-antigen WbuC protein SWALL:Q8GNE9 (EMBL:AF529080) (135 aa) fasta scores: E(): 7.5e-11, 29.1% id in 134 aa, and to Leptospira interrogans conserved hypothetical protein la0093 SWALL:Q8F9U6 (EMBL:AE011200) (177 aa) fasta scores: E(): 4e-17, 41% id in 139 aa; Similar to Escherichia coli O-antigen related WbuC protein SWALL:Q8GNE9 (EMBL:AF529080) (135 aa) fasta scores: E(): 7.5e-11, 29.1% id in 134 aa, and to Leptospira interrogans conserved hypothetical protein la0093 SWALL:Q8F9U6 (EMBL:AE011200) (177 aa) fasta scores: E(): 4e-17, 41% id in 139 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4644 pa4644 SWALL:Q9HVE8 (EMBL:AE004878) (157 aa) fasta scores: E(): 4.9e-17, 37.32% id in 142 aa; putative O-antigen related protein; possible O-antigen related protein 1994181 3286039 BF9343_1629 Bacteroides fragilis NCTC 9343 possible O-antigen related protein YP_211348.1 1993717 D 272559 CDS YP_211349.1 60681205 3286041 complement(1994178..1995386) 1 NC_003228.3 Similar to Anaerocellum thermophilum xylose repressor XylR SWALL:XYLR_ANATH (SWALL:Q44406) (399 aa) fasta scores: E(): 3.6e-32, 33.17% id in 407 aa, and to Bacteroides thetaiotaomicron putative xylose repressor BT0433 SWALL:AAO75540 (EMBL:AE016927) (402 aa) fasta scores: E(): 2.7e-135, 87.78% id in 401 aa, and to Bacillus halodurans transcriptional repressor of the xylose operon BH1094 SWALL:Q9KDW7 (EMBL:AP001510) (407 aa) fasta scores: E(): 1.7e-31, 28.6% id in 388 aa; putative ROK family transcriptional repressor protein 1995386 3286041 BF9343_1630 Bacteroides fragilis NCTC 9343 putative ROK family transcriptional repressor protein YP_211349.1 1994178 R 272559 CDS YP_211350.1 60681206 3286040 1995684..1996601 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri N-acetylneuraminate lyase NanA or Npl or B3225 or Z4583 or ECS4098 or SF3261 SWALL:NANA_ECOLI (SWALL:P06995) (296 aa) fasta scores: E(): 3.1e-16, 27.58% id in 290 aa, and to Lactobacillus plantarum N-acetylneuraminate lyase NanA or LP_3568 SWALL:NANA_LACPL (SWALL:P59407) (292 aa) fasta scores: E(): 7e-18, 30.34% id in 290 aa, and to Streptococcus pneumoniae N-acetylneuraminate lyase, putative sp1676 SWALL:Q97PF3 (EMBL:AE007460) (305 aa) fasta scores: E(): 7.2e-18, 27.98% id in 293 aa; putative N-acetylneuraminate lyase 1996601 3286040 BF9343_1631 Bacteroides fragilis NCTC 9343 putative N-acetylneuraminate lyase YP_211350.1 1995684 D 272559 CDS YP_211351.1 60681207 3286045 1996625..1997809 1 NC_003228.3 Similar to Synechocystis sp. renin-binding protein SLR1975 SWALL:P74124 (EMBL:D90912) (391 aa) fasta scores: E(): 2.7e-53, 35.06% id in 385 aa, and to Bacteroides thetaiotaomicron N-acylglucosamine 2-epimerase BT3605 SWALL:AAO78710 (EMBL:AE016941) (388 aa) fasta scores: E(): 2.7e-49, 32.9% id in 386 aa, and to Anabaena sp. N-acyl-D-glucosamine 2-epimerase ALL3695 SWALL:Q8YQW6 (EMBL:AP003594) (388 aa) fasta scores: E(): 2.6e-48, 34.39% id in 378 aa; hypothetical protein 1997809 3286045 BF9343_1632 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211351.1 1996625 D 272559 CDS YP_211352.1 60681208 3286043 1997825..1999063 1 NC_003228.3 Similar to Caulobacter crescentus major facilitator family transporter CC0336 SWALL:Q9AB95 (EMBL:AE005706) (438 aa) fasta scores: E(): 1.8e-19, 26.34% id in 410 aa, and to Escherichia coli O6 hypothetical transport protein YjjL YjiZ or C4921 SWALL:Q8FB94 (EMBL:AE016770) (427 aa) fasta scores: E(): 3.1e-19, 24.69% id in 409 aa, and to Bradyrhizobium japonicum major facilitator superfamily transporter blr4923 SWALL:Q89KI2 (EMBL:AP005953) (431 aa) fasta scores: E(): 2.1e-17, 25.74% id in 404 aa; putative major facilitator superfamily transporter 1999063 3286043 BF9343_1633 Bacteroides fragilis NCTC 9343 putative major facilitator superfamily transporter YP_211352.1 1997825 D 272559 CDS YP_211353.1 60681209 3286049 1999078..1999524 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0770 SWALL:AAO75877 (EMBL:AE016929) (148 aa) fasta scores: E(): 2.4e-15, 34.01% id in 147 aa, and to Streptococcus pneumoniae hypothetical protein Sp1327 SWALL:Q97Q98 (EMBL:AE007431) (152 aa) fasta scores: E(): 1.3e-09, 28.37% id in 148 aa, and to Yersinia pestis hypothetical protein Y1462 SWALL:Q8D0W9 (EMBL:AE013749) (156 aa) fasta scores: E(): 2.2e-09, 30.66% id in 150 aa; hypothetical protein 1999524 3286049 BF9343_1634 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211353.1 1999078 D 272559 CDS YP_211354.1 60681210 3286023 2003345..2004913 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative outer membrane protein BT3272 SWALL:AAO78378 (EMBL:AE016939) (488 aa) fasta scores: E(): 4.1e-06, 22.56% id in 514 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3102 SWALL:AAO78208 (EMBL:AE016939) (566 aa) fasta scores: E(): 6.3e-06, 24.02% id in 587 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2951 SWALL:AAO78057 (EMBL:AE016938) (512 aa) fasta scores: E(): 6.7e-06, 22.42% id in 562 aa; hypothetical protein 2004913 3286023 BF9343_1636 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211354.1 2003345 D 272559 CDS YP_211355.1 60681211 3286030 2005661..2008930 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 1.4e-53, 27.92% id in 1128 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0140 SWALL:AAO75247 (EMBL:AE016926) (1097 aa) fasta scores: E(): 5.4e-63, 29.73% id in 1113 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 8.9e-61, 28.6% id in 1143 aa; putative outer membrane protein 2008930 3286030 BF9343_1637 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211355.1 2005661 D 272559 CDS YP_211356.1 60681212 3286029 2008979..2010529 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4165 SWALL:AAO79270 (EMBL:AE016944) (519 aa) fasta scores: E(): 2.8e-10, 26.12% id in 555 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3331 SWALL:AAO78437 (EMBL:AE016940) (572 aa) fasta scores: E(): 1.8e-09, 24.47% id in 478 aa, and to limited similarity to Prevotella bryantii hypothetical 57.0 kDa protein SWALL:O06839 (EMBL:U96771) (510 aa) fasta scores: E(): 0.00046, 23.64% id in 461 aa; hypothetical protein 2010529 3286029 BF9343_1638 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211356.1 2008979 D 272559 CDS YP_211357.1 60681213 3286032 complement(2010643..2012205) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4165 SWALL:AAO79270 (EMBL:AE016944) (519 aa) fasta scores: E(): 7.2e-15, 24.72% id in 542 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2195 SWALL:AAO77302 (EMBL:AE016935) (580 aa) fasta scores: E(): 6.2e-12, 26.43% id in 522 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4659 SWALL:AAO79764 (EMBL:AE016946) (557 aa) fasta scores: E(): 5e-11, 24.69% id in 575 aa; hypothetical protein 2012205 3286032 BF9343_1639 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211357.1 2010643 R 272559 CDS YP_211358.1 60681214 3286037 complement(2012223..2015546) 1 NC_003228.3 Similar to Bacteroides fragilis outer membrane protein omp121 SWALL:Q93TH9 (EMBL:AF357210) (1125 aa) fasta scores: E(): 9.8e-51, 25.88% id in 1186 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2364 SWALL:Q8A578 (EMBL:AE016935) (1025 aa) fasta scores: E(): 2.5e-35, 28.03% id in 1145 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3103 SWALL:Q8A352 (EMBL:AE016939) (1061 aa) fasta scores: E(): 8.9e-35, 29.27% id in 1158 aa; putative outer membrane protein 2015546 3286037 BF9343_1640 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211358.1 2012223 R 272559 CDS YP_211359.1 60681215 3286035 complement(2016453..2016818) 1 NC_003228.3 no significant database matches; hypothetical protein 2016818 3286035 BF9343_1641 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211359.1 2016453 R 272559 CDS YP_211360.1 60681216 3286013 2017103..2017819 1 NC_003228.3 no significant database matches; hypothetical protein 2017819 3286013 BF9343_1642 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211360.1 2017103 D 272559 CDS YP_211361.1 60681217 3286014 2018148..2018423 1 NC_003228.3 no significant database matches; hypothetical protein 2018423 3286014 BF9343_1643 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211361.1 2018148 D 272559 CDS YP_211362.1 60681218 3286018 2018454..2018972 1 NC_003228.3 no significant database matches; hypothetical protein 2018972 3286018 BF9343_1644 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211362.1 2018454 D 272559 CDS YP_211363.1 60681219 3286016 2019195..2020040 1 NC_003228.3 C-terminus is similar to the C-terminus of Streptomyces coelicolor hypothetical 25.5 kDa protein SWALL:Q9X950 (EMBL:AJ237976) (233 aa) fasta scores: E(): 1.8e-08, 33.33% id in 147 aa, and C-terminus is similar to the C-terminus of Streptomyces coelicolor putative transcriptional regulator sco5416 or sc8f4.20C SWALL:Q9L2A6 (EMBL:AL939123) (337 aa) fasta scores: E(): 2.4e-08, 33.33% id in 147 aa, and C-terminus is similar to the C-terminus of Streptomyces coelicolor AraC-family transcriptional regulator AdpA or sco2792 or scc105.23 SWALL:Q9L062 (EMBL:AL939114) (398 aa) fasta scores: E(): 1.7e-07, 32.3% id in 130 aa; putative AraC family transcriptional regulator 2020040 3286016 BF9343_1645 Bacteroides fragilis NCTC 9343 putative AraC family transcriptional regulator YP_211363.1 2019195 D 272559 CDS YP_211364.1 60681220 3286019 2020188..2021024 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative regulatory protein BT0110 SWALL:AAO75217 (EMBL:AE016926) (286 aa) fasta scores: E(): 7.1e-25, 32.74% id in 284 aa, and to Bacteroides thetaiotaomicron tetracycline resistance element mobilization regulatory protein RteC BT1427 SWALL:AAO76534 (EMBL:AE016931) (279 aa) fasta scores: E(): 3.1e-18, 29.18% id in 257 aa; hypothetical protein 2021024 3286019 BF9343_1646 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211364.1 2020188 D 272559 CDS YP_211365.1 60681221 3286020 2021201..2021692 1 NC_003228.3 no significant database matches; hypothetical protein 2021692 3286020 BF9343_1647 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211365.1 2021201 D 272559 CDS YP_211366.1 60681222 3285996 2021655..2023754 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2333 SWALL:AAO77440 (EMBL:AE016935) (681 aa) fasta scores: E(): 3.9e-140, 60.14% id in 690 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0108 SWALL:AAO75215 (EMBL:AE016926) (666 aa) fasta scores: E(): 6.6e-128, 61.69% id in 671 aa, and C-terminus is similar to entire previously sequenced Bacteroides fragilis hypothetical 41.4 kDa protein SWALL:Q9KHQ3 (EMBL:AF251288) (359 aa) fasta scores: E(): 1.5e-10, 27.98% id in 343 aa. This CDS overlaps the downstream CDS by 23 nt.; hypothetical protein 2023754 3285996 BF9343_1648 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211366.1 2021655 D 272559 CDS YP_211367.1 60681223 3286021 2023729..2024088 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0107 SWALL:Q8ABK3 (EMBL:AE016926) (92 aa) fasta scores: E(): 7.6e-18, 57.77% id in 90 aa, and to previously sequenced Bacteroides fragilis hypothetical 14.3 kDa protein SWALL:Q8RM73 (EMBL:AY053505) (119 aa) fasta scores: E(): 5.6e-15, 46.84% id in 111 aa. This CDS overlaps the upstream CDS by 23 nt.; hypothetical protein 2024088 3286021 BF9343_1649 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211367.1 2023729 D 272559 CDS YP_211368.1 60681224 3285999 2024498..2024989 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0106 SWALL:AAO75213 (EMBL:AE016926) (148 aa) fasta scores: E(): 1.8e-05, 28.47% id in 144 aa; hypothetical protein 2024989 3285999 BF9343_1650 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211368.1 2024498 D 272559 CDS YP_211369.1 60681225 3287097 complement(2025238..2025624) 1 NC_003228.3 no significant database matches; hypothetical protein 2025624 3287097 BF9343_1651 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211369.1 2025238 R 272559 CDS YP_211370.1 60681226 3286002 complement(2025629..2026678) 1 NC_003228.3 Similar to Escherichia coli O157:H7 plasmid posak1 DNA, complete sequence SWALL:O82881 (EMBL:AB011548) (346 aa) fasta scores: E(): 2e-06, 25.1% id in 251 aa; hypothetical protein 2026678 3286002 BF9343_1652 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211370.1 2025629 R 272559 CDS YP_211371.1 60681227 3286001 complement(2026911..2027387) 1 NC_003228.3 no significant database matches; hypothetical protein 2027387 3286001 BF9343_1653 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211371.1 2026911 R 272559 CDS YP_211372.1 60681228 3285986 complement(2027384..2029486) 1 NC_003228.3 Similar to Bacillus anthracis DNA topoisomerase I TopX or Top1 or Pxo1-142 SWALL:TOP1_BACAN (SWALL:P40114) (887 aa) fasta scores: E(): 7.7e-42, 29.8% id in 708 aa, and to Bacteroides thetaiotaomicron DNA topoisomerase I BT0105 SWALL:AAO75212 (EMBL:AE016926) (693 aa) fasta scores: E(): 2.3e-179, 64.21% id in 693 aa, and to Bacteroides thetaiotaomicron DNA topoisomerase III BT2324 SWALL:AAO77431 (EMBL:AE016935) (699 aa) fasta scores: E(): 6.3e-178, 63.85% id in 700 aa; putative DNA topoisomerase I 2029486 top1 3285986 top1 Bacteroides fragilis NCTC 9343 putative DNA topoisomerase I YP_211372.1 2027384 R 272559 CDS YP_211373.1 60681229 3286012 complement(2029576..2031096) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0103 SWALL:AAO75210 (EMBL:AE016926) (511 aa) fasta scores: E(): 8.2e-44, 35.45% id in 519 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2642 SWALL:AAO77749 (EMBL:AE016936) (601 aa) fasta scores: E(): 1.3e-16, 32.05% id in 365 aa; hypothetical protein 2031096 3286012 BF9343_1655 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211373.1 2029576 R 272559 CDS YP_211374.1 60681230 3287320 2031620..2032504 1 NC_003228.3 Similar to Bacillus subtilis tyrosine recombinase XerD or RipX or BSU23510 SWALL:XERD_BACSU (SWALL:P46352) (296 aa) fasta scores: E(): 3.7e-16, 35.11% id in 262 aa, and to Bacteroides thetaiotaomicron TpnF protein SWALL:Q93L48 (EMBL:AJ311171) (279 aa) fasta scores: E(): 5.2e-28, 36.95% id in 276 aa, and to Rhizobium sp. putative integrase/recombinase Y4qK SWALL:Y4QK_RHISN (SWALL:P55632) (308 aa) fasta scores: E(): 8.9e-26, 34.9% id in 275 aa; putative tyrosine recombinase 2032504 xerC 3287320 xerC Bacteroides fragilis NCTC 9343 putative tyrosine recombinase YP_211374.1 2031620 D 272559 CDS YP_211375.1 60681231 3286007 2032567..2033460 1 NC_003228.3 no significant database matches; hypothetical protein 2033460 3286007 BF9343_1657 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211375.1 2032567 D 272559 CDS YP_211376.1 60681232 3286837 2033537..2033968 1 NC_003228.3 Similar to Leptospira interrogans hypothetical protein la1497 SWALL:Q8F615 (EMBL:AE011329) (135 aa) fasta scores: E(): 5.6e-12, 38.59% id in 114 aa; hypothetical protein 2033968 3286837 BF9343_1658 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211376.1 2033537 D 272559 CDS YP_211377.1 60681233 3285971 2034013..2034894 1 NC_003228.3 no significant database matches; hypothetical protein 2034894 3285971 BF9343_1659 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211377.1 2034013 D 272559 CDS YP_211378.1 60681234 3285978 2034974..2035315 1 NC_003228.3 no significant database matches; hypothetical protein 2035315 3285978 BF9343_1660 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211378.1 2034974 D 272559 CDS YP_211379.1 60681235 3285974 2035389..2036378 1 NC_003228.3 C-terminus is similar to Yersinia pestis hypothetical protein YPO3610 or Y0264 SWALL:Q8ZB19 (EMBL:AJ414158) (161 aa) fasta scores: E(): 2.9e-10, 29.87% id in 154 aa; hypothetical protein 2036378 3285974 BF9343_1661 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211379.1 2035389 D 272559 CDS YP_211380.1 60681236 3285989 2036462..2037367 1 NC_003228.3 no significant database matches; hypothetical protein 2037367 3285989 BF9343_1662 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211380.1 2036462 D 272559 CDS YP_211381.1 60681237 3285981 2037443..2038138 1 NC_003228.3 no significant database matches; hypothetical protein 2038138 3285981 BF9343_1663 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211381.1 2037443 D 272559 CDS YP_211382.1 60681238 3285952 2038213..2038677 1 NC_003228.3 Limited similarity to Streptomyces coelicolor hypothetical protein sco1297 or scbac36f5.08C SWALL:Q93IX3 (EMBL:AL939108) (173 aa) fasta scores: E(): 0.011, 26.23% id in 122 aa; hypothetical protein 2038677 3285952 BF9343_1664 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211382.1 2038213 D 272559 CDS YP_211383.1 60681239 3285990 2038689..2039366 1 NC_003228.3 no significant database matches; hypothetical protein 2039366 3285990 BF9343_1665 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211383.1 2038689 D 272559 CDS YP_211384.1 60681240 3285957 2039422..2040360 1 NC_003228.3 C-terminus is similar to Yersinia pestis hypothetical protein YPO3610 or Y0264 SWALL:Q8ZB19 (EMBL:AJ414158) (161 aa) fasta scores: E(): 1.2e-10, 31.81% id in 154 aa; hypothetical protein 2040360 3285957 BF9343_1666 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211384.1 2039422 D 272559 CDS YP_211385.1 60681241 3285954 2040445..2040822 1 NC_003228.3 no significant database matches; hypothetical protein 2040822 3285954 BF9343_1667 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211385.1 2040445 D 272559 CDS YP_211386.1 60681242 3285966 2040903..2041484 1 NC_003228.3 no significant database matches; hypothetical protein 2041484 3285966 BF9343_1668 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211386.1 2040903 D 272559 CDS YP_211387.1 60681243 3285958 2041562..2042035 1 NC_003228.3 no significant database matches; hypothetical protein 2042035 3285958 BF9343_1669 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211387.1 2041562 D 272559 CDS YP_211388.1 60681244 3285968 2042120..2042668 1 NC_003228.3 Similar to Pseudomonas syringae hypothetical protein PSPTO3337 SWALL:AAO56815 (EMBL:AE016868) (195 aa) fasta scores: E(): 1e-28, 50.27% id in 181 aa; hypothetical protein 2042668 3285968 BF9343_1670 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211388.1 2042120 D 272559 CDS YP_211389.1 60681245 3285945 2042686..2043675 1 NC_003228.3 no significant database matches; hypothetical protein 2043675 3285945 BF9343_1671 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211389.1 2042686 D 272559 CDS YP_211390.1 60681246 3285939 2043708..2044202 1 NC_003228.3 no significant database matches; hypothetical protein 2044202 3285939 BF9343_1672 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211390.1 2043708 D 272559 CDS YP_211391.1 60681247 3285948 2044242..2045141 1 NC_003228.3 no significant database matches; hypothetical protein 2045141 3285948 BF9343_1673 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211391.1 2044242 D 272559 CDS YP_211392.1 60681248 3285947 2045287..2045784 1 NC_003228.3 no significant database matches; hypothetical protein 2045784 3285947 BF9343_1674 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211392.1 2045287 D 272559 CDS YP_211393.1 60681249 3285950 complement(2045796..2046221) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1462 SWALL:AAO76569 (EMBL:AE016931) (149 aa) fasta scores: E(): 9.1e-05, 28.68% id in 129 aa; putative transmembrane protein 2046221 3285950 BF9343_1675 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211393.1 2045796 R 272559 CDS YP_211394.1 60681250 3285878 complement(2046307..2048313) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis mobilization protein C MobC SWALL:Q9ZF54 (EMBL:AF118243) (534 aa) fasta scores: E(): 3.6e-14, 22.93% id in 532 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0102 SWALL:AAO75209 (EMBL:AE016926) (669 aa) fasta scores: E(): 1.7e-214, 79.73% id in 666 aa, and to Bacteroides thetaiotaomicron putative mobilization protein BT2306 SWALL:AAO77413 (EMBL:AE016935) (669 aa) fasta scores: E(): 8.9e-198, 71.92% id in 666 aa; putative transmembrane TraG/TraD family mobilization protein 2048313 3285878 BF9343_1676 Bacteroides fragilis NCTC 9343 putative transmembrane TraG/TraD family mobilization protein YP_211394.1 2046307 R 272559 CDS YP_211395.1 60681251 3285951 complement(2048637..2049932) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0101 SWALL:AAO75208 (EMBL:AE016926) (412 aa) fasta scores: E(): 7.1e-63, 44.31% id in 431 aa, and to Bacteroides thetaiotaomicron hypothetical 46.7 kDa protein SWALL:Q9F6U9 (EMBL:AF289050) (415 aa) fasta scores: E(): 5.2e-56, 42.6% id in 392 aa, and to Bacteroides thetaiotaomicron putative mobilization protein BT2305 SWALL:AAO77412 (EMBL:AE016935) (408 aa) fasta scores: E(): 1.5e-53, 40.46% id in 430 aa; hypothetical protein 2049932 3285951 BF9343_1677 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211395.1 2048637 R 272559 CDS YP_211396.1 60681252 3285881 complement(2049929..2050384) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2612 SWALL:AAO77719 (EMBL:AE016936) (140 aa) fasta scores: E(): 6.5e-25, 55.46% id in 128 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0100 SWALL:AAO75207 (EMBL:AE016926) (145 aa) fasta scores: E(): 4.3e-24, 54.19% id in 131 aa; hypothetical protein 2050384 3285881 BF9343_1678 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211396.1 2049929 R 272559 CDS YP_211397.1 60681253 3285879 complement(2050405..2050740) 1 NC_003228.3 no significant database matches; hypothetical protein 2050740 3285879 BF9343_1679 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211397.1 2050405 R 272559 CDS YP_211398.1 60681254 3286058 2051137..2051916 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conjugative transposon protein TraA SWALL:Q9F6U8 (EMBL:AF289050) (251 aa) fasta scores: E(): 2.3e-44, 48.19% id in 249 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0098 SWALL:Q8ABL2 (EMBL:AE016926) (253 aa) fasta scores: E(): 2.3e-46, 50.19% id in 253 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2303 SWALL:Q8A5D6 (EMBL:AE016935) (252 aa) fasta scores: E(): 3.6e-46, 49% id in 251 aa; putative conjugative transposon protein 2051916 traA 3286058 traA Bacteroides fragilis NCTC 9343 putative conjugative transposon protein YP_211398.1 2051137 D 272559 CDS YP_211399.1 60681255 3285864 2051897..2052301 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein found in conjugate transposon TraB SWALL:Q9F6U7 (EMBL:AF289050) (149 aa) fasta scores: E(): 2.6e-09, 33.96% id in 106 aa; hypothetical protein 2052301 traB 3285864 traB Bacteroides fragilis NCTC 9343 hypothetical protein YP_211399.1 2051897 D 272559 CDS YP_211400.1 60681256 3286133 2052321..2052908 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein from conjugate transposon TraD SWALL:Q9F6U5 (EMBL:AF289050) (246 aa) fasta scores: E(): 0.023, 27.08% id in 192 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0096 SWALL:AAO75203 (EMBL:AE016926) (226 aa) fasta scores: E(): 0.0031, 26.92% id in 208 aa; conserved hypothetical protein found in conjugate transposon 2052908 traD 3286133 traD Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_211400.1 2052321 D 272559 CDS YP_211401.1 60681257 3286106 2052927..2053226 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugative transposon TraE SWALL:Q9F6U4 (EMBL:AF289050) (105 aa) fasta scores: E(): 7.8e-25, 77% id in 100 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT4767 SWALL:AAO79872 (EMBL:AE016946) (99 aa) fasta scores: E(): 9.3e-27, 80.8% id in 99 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0095 SWALL:AAO75202 (EMBL:AE016926) (98 aa) fasta scores: E(): 7.2e-26, 80.41% id in 97 aa; putative transmembrane conserved protein found in conjugative transposon 2053226 traE 3286106 traE Bacteroides fragilis NCTC 9343 putative transmembrane conserved protein found in conjugative transposon YP_211401.1 2052927 D 272559 CDS YP_211402.1 60681258 3286226 2053238..2053561 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative conserved protein found in conjugative transposon TraF SWALL:Q9F6U3 (EMBL:AF289050) (110 aa) fasta scores: E(): 1.9e-31, 69.9% id in 103 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0094 SWALL:AAO75201 (EMBL:AE016926) (108 aa) fasta scores: E(): 3.3e-30, 69.9% id in 103 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT4768 SWALL:AAO79873 (EMBL:AE016946) (106 aa) fasta scores: E(): 1.3e-28, 69.38% id in 98 aa; putative transmembrane conserved protein found in conjugate transposon 2053561 traF 3286226 traF Bacteroides fragilis NCTC 9343 putative transmembrane conserved protein found in conjugate transposon YP_211402.1 2053238 D 272559 CDS YP_211403.1 60681259 3286864 2053558..2056059 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraG SWALL:Q9F6U2 (EMBL:AF289050) (838 aa) fasta scores: E(): 0, 76.05% id in 831 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0093 SWALL:AAO75200 (EMBL:AE016926) (834 aa) fasta scores: E(): 0, 75.69% id in 831 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT4770 SWALL:AAO79875 (EMBL:AE016946) (772 aa) fasta scores: E(): 0, 69.78% id in 771 aa; putative conserved protein found in conjugate transposon 2056059 traG 3286864 traG Bacteroides fragilis NCTC 9343 putative conserved protein found in conjugate transposon YP_211403.1 2053558 D 272559 CDS YP_211404.1 60681260 3285888 2056259..2056621 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraH SWALL:Q9F6U1 (EMBL:AF289050) (191 aa) fasta scores: E(): 5.7e-08, 35.04% id in 117 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0092 SWALL:AAO75199 (EMBL:AE016926) (118 aa) fasta scores: E(): 2.2e-18, 47.5% id in 120 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2601 SWALL:AAO77708 (EMBL:AE016936) (123 aa) fasta scores: E(): 8.5e-10, 35.89% id in 117 aa; conserved hypothetical protein found in conjugate transposon 2056621 traH 3285888 traH Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_211404.1 2056259 D 272559 CDS YP_211405.1 60681261 3286402 2056626..2057255 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraI SWALL:Q9F6U0 (EMBL:AF289050) (209 aa) fasta scores: E(): 3.8e-39, 55.5% id in 209 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0091 SWALL:AAO75198 (EMBL:AE016926) (209 aa) fasta scores: E(): 5.9e-43, 60.47% id in 210 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2294 SWALL:AAO77401 (EMBL:AE016935) (209 aa) fasta scores: E(): 9.9e-36, 51.92% id in 208 aa; conserved protein found in conjugate transposon 2057255 traI 3286402 traI Bacteroides fragilis NCTC 9343 conserved protein found in conjugate transposon YP_211405.1 2056626 D 272559 CDS YP_211406.1 60681262 3286415 2057305..2058309 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraJ SWALL:Q9F6T9 (EMBL:AF289050) (334 aa) fasta scores: E(): 2.4e-90, 68.88% id in 331 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0090 SWALL:AAO75197 (EMBL:AE016926) (341 aa) fasta scores: E(): 4e-99, 73.79% id in 332 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2599 SWALL:AAO77706 (EMBL:AE016936) (337 aa) fasta scores: E(): 1e-85, 63.66% id in 333 aa; conserved transmembrane protein found in conjugative transposon 2058309 traJ 3286415 traJ Bacteroides fragilis NCTC 9343 conserved transmembrane protein found in conjugative transposon YP_211406.1 2057305 D 272559 CDS YP_211407.1 60681263 3286932 2058359..2058982 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraK SWALL:Q9F6T8 (EMBL:AF289050) (207 aa) fasta scores: E(): 1.2e-60, 73.43% id in 207 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0089 SWALL:AAO75196 (EMBL:AE016926) (207 aa) fasta scores: E(): 3.1e-66, 79.22% id in 207 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2292 SWALL:AAO77399 (EMBL:AE016935) (207 aa) fasta scores: E(): 7.5e-61, 73.43% id in 207 aa; conserved hypothetical protein found in conjugate transposon 2058982 traK 3286932 traK Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_211407.1 2058359 D 272559 CDS YP_211408.1 60681264 3287037 2058988..2059272 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraL SWALL:Q9F6T7 (EMBL:AF289050) (106 aa) fasta scores: E(): 0.0095, 34.11% id in 85 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0088 SWALL:AAO75195 (EMBL:AE016926) (101 aa) fasta scores: E(): 1.2e-15, 52.87% id in 87 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2291 SWALL:AAO77398 (EMBL:AE016935) (108 aa) fasta scores: E(): 2e-11, 52.85% id in 70 aa; conserved hypothetical protein found in conjugate transposon 2059272 traL 3287037 traL Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_211408.1 2058988 D 272559 CDS YP_211409.1 60681265 3285909 2059313..2060413 1 NC_003228.3 no significant database matches; hypothetical protein 2060413 3285909 BF9343_1691 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211409.1 2059313 D 272559 CDS YP_211410.1 60681266 3286569 2060434..2061825 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraM SWALL:Q9F6T6 (EMBL:AF289050) (452 aa) fasta scores: E(): 3.5e-64, 47.35% id in 473 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0087 SWALL:AAO75194 (EMBL:AE016926) (461 aa) fasta scores: E(): 1.5e-70, 64.64% id in 461 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2596 SWALL:AAO77703 (EMBL:AE016936) (432 aa) fasta scores: E(): 9.1e-50, 39.95% id in 423 aa; conserved protein found in conjugate transposon 2061825 traM 3286569 traM Bacteroides fragilis NCTC 9343 conserved protein found in conjugate transposon YP_211410.1 2060434 D 272559 CDS YP_211411.1 60681267 3285158 2061862..2062800 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraN SWALL:Q9F6T5 (EMBL:AF289050) (329 aa) fasta scores: E(): 9.2e-68, 53.33% id in 330 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0086 SWALL:AAO75193 (EMBL:AE016926) (302 aa) fasta scores: E(): 1.4e-96, 80.12% id in 312 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2595 SWALL:AAO77702 (EMBL:AE016936) (309 aa) fasta scores: E(): 2e-68, 54.95% id in 313 aa; conserved hypothetical protein found in conjugate transposon 2062800 traN 3285158 traN Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_211411.1 2061862 D 272559 CDS YP_211412.1 60681268 3287115 2062804..2063385 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraO SWALL:Q9F6T4 (EMBL:AF289050) (191 aa) fasta scores: E(): 6.1e-38, 52.6% id in 192 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0085 SWALL:AAO75192 (EMBL:AE016926) (192 aa) fasta scores: E(): 1e-54, 64.58% id in 192 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2288 SWALL:AAO77395 (EMBL:AE016935) (194 aa) fasta scores: E(): 2.6e-37, 47.66% id in 193 aa; conserved hypothetical protein found in conjugate transposon 2063385 traO 3287115 traO Bacteroides fragilis NCTC 9343 conserved hypothetical protein found in conjugate transposon YP_211412.1 2062804 D 272559 CDS YP_211413.1 60681269 3287117 2063410..2063859 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon TraQ SWALL:Q9F6T2 (EMBL:AF289050) (165 aa) fasta scores: E(): 4.4e-28, 53.79% id in 145 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0084 SWALL:AAO75191 (EMBL:AE016926) (147 aa) fasta scores: E(): 2.9e-34, 62.5% id in 144 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT2287 SWALL:AAO77394 (EMBL:AE016935) (145 aa) fasta scores: E(): 1.4e-20, 44.05% id in 143 aa. This CDS overlaps 12 nt with the downstream CDS; conserved protein found in conjugate transposon 2063859 traQ 3287117 traQ Bacteroides fragilis NCTC 9343 conserved protein found in conjugate transposon YP_211413.1 2063410 D 272559 CDS YP_211414.1 60681270 3285902 2063846..2064502 1 NC_003228.3 no significant database hits. This CDS overlaps 12 nt with the upstream CDS.; hypothetical protein 2064502 3285902 BF9343_1696 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211414.1 2063846 D 272559 CDS YP_211415.1 60681271 3285911 2064552..2065382 1 NC_003228.3 no significant database matches; hypothetical protein 2065382 3285911 BF9343_1697 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211415.1 2064552 D 272559 CDS YP_211416.1 60681272 3289315 complement(2065534..2065977) 1 NC_003228.3 Similar to Rhodobacter capsulatus DNA repair protein RadC homolog SWALL:RADC_RHOCA (SWALL:P72255) (214 aa) fasta scores: E(): 6.9e-07, 31.81% id in 132 aa, and to Bacteroides thetaiotaomicron putative DNA repair protein BT0078 SWALL:AAO75185 (EMBL:AE016926) (150 aa) fasta scores: E(): 8.5e-30, 53.33% id in 150 aa. Note: Also similar to BF1221 (151 aa) fasta scores: E(): 2.6e-33, 55.333% identity in 150 aa overlap and to BF0428 (231 aa) fasta scores: E(): 2.9e-15, 33.582% identity in 134 aa overlap; putative DNA repair protein 2065977 radC3 3289315 radC3 Bacteroides fragilis NCTC 9343 putative DNA repair protein YP_211416.1 2065534 R 272559 CDS YP_211417.1 60681273 3285920 complement(2066573..2067175) 1 NC_003228.3 no significant database matches; hypothetical protein 2067175 3285920 BF9343_1699 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211417.1 2066573 R 272559 CDS YP_211418.1 60681274 3285893 complement(2067285..2068997) 1 NC_003228.3 Similar to Bacillus subtilis stage 0 sporulation protein J spo0J or BSU40960 SWALL:SP0J_BACSU (SWALL:P26497) (282 aa) fasta scores: E(): 1.7e-17, 40.62% id in 160 aa, and to Thermus thermophilus putative partitioning protein putative parB/Spo0J SWALL:Q9LCY0 (EMBL:AJ277593) (215 aa) fasta scores: E(): 1.2e-19, 45.6% id in 182 aa, and to Bradyrhizobium japonicum chromosome partitioning protein B ParB or BLL0630 SWALL:Q89WP8 (EMBL:AP005937) (302 aa) fasta scores: E(): 1.4e-18, 43.91% id in 148 aa; putative ParB-family protein 2068997 3285893 BF9343_1700 Bacteroides fragilis NCTC 9343 putative ParB-family protein YP_211418.1 2067285 R 272559 CDS YP_211419.1 60681275 3285882 complement(2069147..2069764) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2282 SWALL:Q8A5F7 (EMBL:AE016935) (190 aa) fasta scores: E(): 2.5e-20, 41.66% id in 180 aa; hypothetical protein 2069764 3285882 BF9343_1701 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211419.1 2069147 R 272559 CDS YP_211420.1 60681276 3285924 complement(2069971..2070609) 1 NC_003228.3 no significant database matches; hypothetical protein 2070609 3285924 BF9343_1702 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211420.1 2069971 R 272559 CDS YP_211421.1 60681277 3285919 complement(2070680..2071654) 1 NC_003228.3 Similar to the plasmid borne Yersinia enterocolitica antirestriction protein ArdC SWALL:CAD58578 (EMBL:AJ519722) (320 aa) fasta scores: E(): 1.3e-11, 27.96% id in 304 aa, and to the also plasmid borne Escherichia coli DNA primase TraC SWALL:TRC4_ECOLI (SWALL:P27189) (1061 aa) fasta scores: E(): 2.3e-11, 28.48% id in 316 aa; putative DNA primase 2071654 3285919 BF9343_1703 Bacteroides fragilis NCTC 9343 putative DNA primase YP_211421.1 2070680 R 272559 CDS YP_211422.1 60681278 3285755 2071892..2072320 1 NC_003228.3 no significant database matches; hypothetical protein 2072320 3285755 BF9343_1704 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211422.1 2071892 D 272559 CDS YP_211423.1 60681279 3285875 2072453..2072944 1 NC_003228.3 no significant database matches; hypothetical protein 2072944 3285875 BF9343_1705 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211423.1 2072453 D 272559 CDS YP_211424.1 60681280 3285932 2073026..2073532 1 NC_003228.3 no significant database matches; hypothetical protein 2073532 3285932 BF9343_1706 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211424.1 2073026 D 272559 CDS YP_211425.1 60681281 3285754 2073620..2074210 1 NC_003228.3 no significant database matches; hypothetical protein 2074210 3285754 BF9343_1707 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211425.1 2073620 D 272559 CDS YP_211426.1 60681282 3285426 complement(2074404..2075198) 1 NC_003228.3 Similar to Clostridium perfringens hypothetical protein CPE2094 SWALL:Q8XIM1 (EMBL:AP003192) (259 aa) fasta scores: E(): 1.1e-16, 27.2% id in 261 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0426 SWALL:AAO75533 (EMBL:AE016927) (256 aa) fasta scores: E(): 2.5e-14, 29.34% id in 259 aa; putative ferredoxin 2075198 3285426 BF9343_1708 Bacteroides fragilis NCTC 9343 putative ferredoxin YP_211426.1 2074404 R 272559 CDS YP_211427.1 60681283 3287133 2075304..2075675 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transcriptional regulator BT1262 SWALL:Q8A8A5 (EMBL:AE016931) (115 aa) fasta scores: E(): 6.3e-18, 48.11% id in 106 aa, and to Clostridium acetobutylicum predicted transcriptional regulator CAC2934 SWALL:Q97F21 (EMBL:AE007790) (112 aa) fasta scores: E(): 1.6e-13, 44.86% id in 107 aa; putative transcriptional regulator 2075675 3287133 BF9343_1709 Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_211427.1 2075304 D 272559 CDS YP_211428.1 60681284 3285763 2075928..2076356 1 NC_003228.3 no significant database matches; hypothetical protein 2076356 3285763 BF9343_1710 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211428.1 2075928 D 272559 CDS YP_211429.1 60681285 3285853 2076503..2076796 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1129 SWALL:Q8A8N8 (EMBL:AE016930) (103 aa) fasta scores: E(): 4e-11, 47.67% id in 86 aa; hypothetical protein 2076796 3285853 BF9343_1711 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211429.1 2076503 D 272559 CDS YP_211430.1 60681286 3285760 2076798..2077115 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1930 SWALL:Q8A6F4 (EMBL:AE016934) (97 aa) fasta scores: E(): 5.4e-11, 46.73% id in 92 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2336 SWALL:Q8A5A3 (EMBL:AE016935) (97 aa) fasta scores: E(): 1.6e-10, 35.48% id in 93 aa; hypothetical protein 2077115 3285760 BF9343_1712 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211430.1 2076798 D 272559 CDS YP_211431.1 60681287 3285761 complement(2077209..2078504) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis transposase BipH SWALL:Q9ZI85 (EMBL:AF038866) (410 aa) fasta scores: E(): 3e-60, 41.66% id in 408 aa, and to Bacteroides thetaiotaomicron integrase protein intdot SWALL:Q93L62 (EMBL:AJ311171) (411 aa) fasta scores: E(): 1.2e-58, 40.74% id in 405 aa; putative bacteriophage integrase 2078504 3285761 BF9343_1713 Bacteroides fragilis NCTC 9343 putative bacteriophage integrase YP_211431.1 2077209 R 272559 CDS YP_211432.1 60681288 3285758 complement(2078757..2080019) 1 NC_003228.3 Similar to Dictyostelium discoideum alpha-L-fucosidase precursor AlfA SWALL:FUCO_DICDI (SWALL:P10901) (461 aa) fasta scores: E(): 8.8e-62, 42.17% id in 377 aa, and to Dictyostelium discoideum protein similar to dictyostelium discoideum SWALL:AAO51149 (EMBL:AC116956) (461 aa) fasta scores: E(): 8.8e-62, 42.17% id in 377 aa; putative alpha-L-fucosidase 2080019 3285758 BF9343_1714 Bacteroides fragilis NCTC 9343 putative alpha-L-fucosidase YP_211432.1 2078757 R 272559 CDS YP_211433.1 60681289 3285759 complement(2080213..2081832) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3102 SWALL:Q8A353 (EMBL:AE016939) (566 aa) fasta scores: E(): 9.2e-08, 22.05% id in 594 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2195 SWALL:Q8A5P3 (EMBL:AE016935) (580 aa) fasta scores: E(): 1.7e-07, 24.95% id in 589 aa; putative outer membrane protein 2081832 3285759 BF9343_1715 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211433.1 2080213 R 272559 CDS YP_211434.1 60681290 3285756 complement(2081853..2085104) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 1.4e-54, 28.84% id in 1106 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:Q8A3Z9 (EMBL:AE016937) (1083 aa) fasta scores: E(): 3.1e-59, 29.46% id in 1130 aa; putative outer membrane protein 2085104 3285756 BF9343_1716 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211434.1 2081853 R 272559 CDS YP_211435.1 60681291 3285757 2085584..2086906 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative ATPase BT3490 SWALL:Q8A218 (EMBL:AE016940) (449 aa) fasta scores: E(): 4.7e-94, 57.9% id in 449 aa, and to Pyrococcus abyssi hypothetical protein pyrab15030 pyrab15030 or pab1371 SWALL:Q9UYK4 (EMBL:AJ248287) (472 aa) fasta scores: E(): 7.2e-35, 32.93% id in 413 aa, and to Fusobacterium nucleatum ATPase FN0123 SWALL:Q8RGZ8 (EMBL:AE010526) (454 aa) fasta scores: E(): 4.4e-32, 32.2% id in 413 aa; putative ATP/GTP-binding protein 2086906 3285757 BF9343_1717 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding protein YP_211435.1 2085584 D 272559 CDS YP_211436.1 60681292 3285769 2086984..2087184 1 NC_003228.3 no significant database matches; hypothetical protein 2087184 3285769 BF9343_1718 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211436.1 2086984 D 272559 CDS YP_211437.1 60681293 3285767 2087597..2088847 1 NC_003228.3 Similar to Yersinia pestis hypothetical Y0507 SWALL:Q8CLR3 (EMBL:AE013652) (330 aa) fasta scores: E(): 8.2e-08, 24.83% id in 310 aa. Possible alternative start site at codon 53; hypothetical protein 2088847 3285767 BF9343_1719 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211437.1 2087597 D 272559 CDS YP_211438.1 60681294 3285768 complement(2088953..2090569) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3102 SWALL:Q8A353 (EMBL:AE016939) (566 aa) fasta scores: E(): 8.8e-10, 26.78% id in 601 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4165 SWALL:Q8A056 (EMBL:AE016944) (519 aa) fasta scores: E(): 2.1e-08, 24.45% id in 552 aa; possible outer membrane protein 2090569 3285768 BF9343_1720 Bacteroides fragilis NCTC 9343 possible outer membrane protein YP_211438.1 2088953 R 272559 CDS YP_211439.1 60681295 3285766 complement(2090598..2093867) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron SusC, outer membrane protein involved in starch binding BT3702 SWALL:Q8A1G1 (EMBL:AE016941) (1003 aa) fasta scores: E(): 3.8e-33, 28.71% id in 1125 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1440 SWALL:Q8A7T4 (EMBL:AE016931) (1042 aa) fasta scores: E(): 6.5e-54, 28.22% id in 1123 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0029 SWALL:Q8ABT1 (EMBL:AE016926) (1087 aa) fasta scores: E(): 1.1e-48, 26.93% id in 1162 aa; putative outer membrane protein 2093867 3285766 BF9343_1721 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211439.1 2090598 R 272559 CDS YP_211440.1 60681296 3285764 2094629..2097799 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 2.7e-56, 30.14% id in 1098 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 5.9e-183, 45.67% id in 1086 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0140 SWALL:AAO75247 (EMBL:AE016926) (1097 aa) fasta scores: E(): 8.6e-96, 32.81% id in 1082 aa; putative TonB-dependent outer membrane receptor protein 2097799 3285764 BF9343_1722 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_211440.1 2094629 D 272559 CDS YP_211441.1 60681297 3285765 2097811..2099826 1 NC_003228.3 Identical to fragment of previously sequenced Bacteroides fragilis hypothetical protein SWALL:Q84IE3 (EMBL:AB102772) (218 aa) fasta scores: E(): 1.1e-86, 100% id in 218 aa, and similar to entire Bacteroides thetaiotaomicron hypothetical protein BT2806 SWALL:Q8A3Z8 (EMBL:AE016937) (666 aa) fasta scores: E(): 1.6e-100, 42.6% id in 669 aa; hypothetical protein 2099826 3285765 BF9343_1723 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211441.1 2097811 D 272559 CDS YP_211442.1 60681298 3289150 2100110..2101744 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis neuraminidase precursor NanH SWALL:Q45145 (EMBL:D28493) (544 aa) fasta scores: E(): 1.9e-217, 99.63% id in 544 aa, and similar to Clostridium sordellii sialidase precursor SWALL:NANH_CLOSO (SWALL:P15698) (404 aa) fasta scores: E(): 3.1e-23, 32.86% id in 356 aa. Note: Also similar to BF4051 NanH2 (545 aa) fasta scores: E(): 5.9e-171, 78.269% identity in 543 aa overlap; neuraminidase precursor 2101744 nanH 3289150 nanH Bacteroides fragilis NCTC 9343 neuraminidase precursor YP_211442.1 2100110 D 272559 CDS YP_211443.1 60681299 3289276 2101776..2103788 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis beta-N-acetylhexoosaminidase NahA SWALL:Q84IE2 (EMBL:AB102772) (670 aa) fasta scores: E(): 0, 99.55% id in 670 aa, and similar to Bacteroides thetaiotaomicron beta-hexosaminidase precursor BT0456 SWALL:Q8AAK8 (EMBL:AE016927) (670 aa) fasta scores: E(): 7.6e-210, 73.73% id in 670 aa, and to Porphyromonas gingivalis beta-hexosaminidase precursor NahA SWALL:HEXA_PORGI (SWALL:P49008) (777 aa) fasta scores: E(): 1.7e-17, 27.23% id in 503 aa; beta-N-acetylhexoosaminidase 2103788 nahA 3289276 nahA Bacteroides fragilis NCTC 9343 beta-N-acetylhexoosaminidase YP_211443.1 2101776 D 272559 CDS YP_211444.1 60681300 3285490 2103809..2104471 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis sialate O-acetylesterase EstA SWALL:Q84IE1 (EMBL:AB102772) (220 aa) fasta scores: E(): 1.9e-83, 99.54% id in 220 aa, and similar to Anabaena sp. hypothetical protein ALL0976 SWALL:Q8YY75 (EMBL:AP003584) (249 aa) fasta scores: E(): 5.9e-14, 34.07% id in 179 aa; sialate-O-acetyltransferase 2104471 estA 3285490 estA Bacteroides fragilis NCTC 9343 sialate-O-acetyltransferase YP_211444.1 2103809 D 272559 CDS YP_211445.1 60681301 3285452 2104468..2106540 1 NC_003228.3 Identical to Bacteroides fragilis sialate O-acetylesterase EstS SWALL:Q84IE0 (EMBL:AB102772) (690 aa) fasta scores: E(): 0, 99.13% id in 690 aa, and similar to Bacteroides thetaiotaomicron sialic acid-specific 9-O-acetylesterase BT0457 SWALL:Q8AAK7 (EMBL:AE016927) (692 aa) fasta scores: E(): 1.3e-216, 72.56% id in 689 aa; sialate O-acetylesterase 2106540 estS 3285452 estS Bacteroides fragilis NCTC 9343 sialate O-acetylesterase YP_211445.1 2104468 D 272559 CDS YP_211446.1 60681302 3289252 2106562..2109132 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis beta-mannosidase BmnA SWALL:Q84ID9 (EMBL:AB102772) (856 aa) fasta scores: E(): 0, 99.53% id in 856 aa, and similar to Bacteroides thetaiotaomicron beta-mannosidase precursor BT0458 SWALL:Q8AAK6 (EMBL:AE016927) (864 aa) fasta scores: E(): 0, 75.85% id in 849 aa, and to Porphyromonas gingivalis W83 beta-mannosidase, putative PG0032 SWALL:AAQ65286 (EMBL:AE017172) (861 aa) fasta scores: E(): 7.1e-162, 46.89% id in 838 aa; beta-mannosidase 2109132 bmnA 3289252 bmnA Bacteroides fragilis NCTC 9343 beta-mannosidase YP_211446.1 2106562 D 272559 CDS YP_211447.1 60681303 3289281 2109152..2111476 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis beta-N-acetylhexosaminidase NahB SWALL:Q84ID8 (EMBL:AB102772) (747 aa) fasta scores: E(): 1.8e-157, 95.86% id in 774 aa, and similar to Bacteroides thetaiotaomicron beta-hexosaminidase precursor BT0459 SWALL:Q8AAK5 (EMBL:AE016927) (774 aa) fasta scores: E(): 0, 77.51% id in 774 aa; beta-N-acetylhexosaminidase 2111476 nahB 3289281 nahB Bacteroides fragilis NCTC 9343 beta-N-acetylhexosaminidase YP_211447.1 2109152 D 272559 CDS YP_211448.1 60681304 3285780 2111487..2112704 1 NC_003228.3 Almost identical to Bacteroides fragilis hypothetical protein SWALL:Q84ID7 (EMBL:AB102772) (404 aa) fasta scores: E(): 1.7e-156, 98.76% id in 405 aa, and similar to Clostridium perfringens hypothetical protein CPE0726 SWALL:Q8XMG3 (EMBL:AP003187) (384 aa) fasta scores: E(): 4.1e-09, 29.14% id in 398 aa; putative lipoprotein 2112704 3285780 BF9343_1730 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211448.1 2111487 D 272559 CDS YP_211449.1 60681305 3285861 2112772..2114844 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis beta-N-acetylhexosaminidase NahC SWALL:Q84ID6 (EMBL:AB102772) (689 aa) fasta scores: E(): 0, 98.26% id in 691 aa, and similar to Bacteroides thetaiotaomicron beta-hexosaminidase precursor BT0460 SWALL:Q8AAK4 (EMBL:AE016927) (691 aa) fasta scores: E(): 1.4e-212, 74.3% id in 685 aa; beta-N-acetylhexosaminidase 2114844 nahC 3285861 nahC Bacteroides fragilis NCTC 9343 beta-N-acetylhexosaminidase YP_211449.1 2112772 D 272559 CDS YP_211450.1 60681306 3285774 2114905..2117154 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative outer membrane protein SWALL:Q84ID5 (EMBL:AB102772) (749 aa) fasta scores: E(): 0, 99.59% id in 749 aa, and similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1032 SWALL:Q8A8Y5 (EMBL:AE016930) (756 aa) fasta scores: E(): 0, 77.34% id in 724 aa, and to Porphyromonas gingivalis immunoreactive 87kd antigen PG92 SWALL:Q9S3Q9 (EMBL:AF175724) (771 aa) fasta scores: E(): 2.2e-121, 58.73% id in 756 aa; putative outer membrane protein 2117154 3285774 BF9343_1732 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211450.1 2114905 D 272559 CDS YP_211451.1 60681307 3289005 2117168..2119669 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis beta-galactosidase BgaA SWALL:Q84ID4 (EMBL:AB102772) (833 aa) fasta scores: E(): 0, 99.28% id in 833 aa, and similar to Bacteroides thetaiotaomicron beta-galactosidase BT0461 SWALL:Q8AAK3 (EMBL:AE016927) (839 aa) fasta scores: E(): 0, 83.53% id in 832 aa, and to Bacteroides thetaiotaomicron beta-galactosidase BT4667 SWALL:Q89YR4 (EMBL:AE016946) (815 aa) fasta scores: E(): 1.8e-176, 61.67% id in 835 aa; beta-galactosidase 2119669 bgaA 3289005 bgaA Bacteroides fragilis NCTC 9343 beta-galactosidase YP_211451.1 2117168 D 272559 CDS YP_211452.1 60681308 3285772 2119766..2122510 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative outer membrane protein SWALL:Q84ID3 (EMBL:AB102772) (914 aa) fasta scores: E(): 0, 99.12% id in 914 aa, and similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0483 SWALL:Q8AAI1 (EMBL:AE016927) (914 aa) fasta scores: E(): 0, 84.4% id in 917 aa; putative outer membrane protein 2122510 3285772 BF9343_1734 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211452.1 2119766 D 272559 CDS YP_211453.1 60681309 3285773 2122525..2124156 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative outer membrane protein SWALL:Q84ID2 (EMBL:AB102772) (543 aa) fasta scores: E(): 0, 99.44% id in 543 aa, and similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0484 SWALL:Q8AAI0 (EMBL:AE016927) (577 aa) fasta scores: E(): 2.4e-177, 75.13% id in 543 aa; putative outer membrane protein 2124156 3285773 BF9343_1735 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211453.1 2122525 D 272559 CDS YP_211454.1 60681310 3285478 complement(2124358..2125542) 1 NC_003228.3 Similar to Halobacterium mediterranei chaperone protein DNAJ or hsp40 SWALL:DNAJ_HALME (SWALL:Q9HHB8) (384 aa) fasta scores: E(): 1.2e-40, 37.82% id in 386 aa, and to Bacteroides thetaiotaomicron chaperone protein DNAJ BT1244 SWALL:Q8A8C3 (EMBL:AE016931) (396 aa) fasta scores: E(): 9.7e-114, 89.92% id in 397 aa, and to Porphyromonas gingivalis chaperone protein DNAJ or PG1776 SWALL:DNAJ_PORGI (SWALL:Q9XCA6) (383 aa) fasta scores: E(): 2.3e-57, 62.72% id in 397 aa; putative chaperone protein 2125542 dnaJ 3285478 dnaJ Bacteroides fragilis NCTC 9343 putative chaperone protein YP_211454.1 2124358 R 272559 CDS YP_211455.1 60681311 3289147 complement(2125594..2126181) 1 NC_003228.3 Similar to Francisella tularensis GrpE protein SWALL:GRPE_FRATU (SWALL:P48204) (195 aa) fasta scores: E(): 5.4e-14, 37.69% id in 191 aa, and to Bacteroides thetaiotaomicron GrpE protein BT1243 SWALL:Q8A8C4 (EMBL:AE016931) (193 aa) fasta scores: E(): 9.4e-45, 80% id in 195 aa, and to Porphyromonas gingivalis W83 GrpE protein or PG1775 SWALL:AAQ66776 (EMBL:AE017178) (194 aa) fasta scores: E(): 3.8e-25, 52.1% id in 190 aa; putative GrpE protein (HSP70 cofactor) 2126181 grpE 3289147 grpE Bacteroides fragilis NCTC 9343 putative GrpE protein (HSP70 cofactor) YP_211455.1 2125594 R 272559 CDS YP_211456.1 60681312 3285770 2126417..2128030 1 NC_003228.3 Similar to Bacillus subtilis ABC transporter YkpA protein SWALL:O31716 (EMBL:Z99111) (540 aa) fasta scores: E(): 5.4e-119, 58.44% id in 539 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1242 SWALL:Q8A8C5 (EMBL:AE016931) (539 aa) fasta scores: E(): 1.9e-188, 96.82% id in 536 aa, and to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG2206 SWALL:AAQ67147 (EMBL:AE017179) (538 aa) fasta scores: E(): 1.4e-153, 78.02% id in 537 aa; putative ABC transporter component 2128030 3285770 BF9343_1738 Bacteroides fragilis NCTC 9343 putative ABC transporter component YP_211456.1 2126417 D 272559 CDS YP_211457.1 60681313 3285771 2128194..2128757 1 NC_003228.3 Similar to Pseudomonas aeruginosa RNA polymerase Sigma-H factor AlgU or AlgT or pa0762 SWALL:RPSH_PSEAE (SWALL:Q06198) (193 aa) fasta scores: E(): 9.9e-13, 29.53% id in 193 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4571 SWALL:AAO79676 (EMBL:AE016945) (186 aa) fasta scores: E(): 1.1e-40, 57.67% id in 189 aa, and to Bacillus halodurans putative RNA polymerase sigma factor SigW or BH0263 SWALL:Q9KG50 (EMBL:AP001507) (187 aa) fasta scores: E(): 4.3e-15, 29.44% id in 180 aa; putative RNA polymerase ECF-type sigma factor 2128757 3285771 BF9343_1739 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_211457.1 2128194 D 272559 CDS YP_211458.1 60681314 3285787 2128754..2129176 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4570 SWALL:AAO79675 (EMBL:AE016945) (135 aa) fasta scores: E(): 2.6e-06, 32.16% id in 143 aa; putative transmembrane protein 2129176 3285787 BF9343_1740 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211458.1 2128754 D 272559 CDS YP_211459.1 60681315 3285786 2129190..2130263 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4569 SWALL:AAO79674 (EMBL:AE016945) (361 aa) fasta scores: E(): 8.7e-57, 43.94% id in 355 aa; putative transmembrane protein 2130263 3285786 BF9343_1741 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211459.1 2129190 D 272559 CDS YP_211460.1 60681316 3285784 complement(2130403..2131449) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1240 SWALL:AAO76347 (EMBL:AE016931) (349 aa) fasta scores: E(): 3.5e-103, 75.71% id in 350 aa; hypothetical protein 2131449 3285784 BF9343_1742 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211460.1 2130403 R 272559 CDS YP_211461.1 60681317 3285785 2131554..2132399 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative metal-dependent membrane protease BT1239 SWALL:AAO76346 (EMBL:AE016931) (298 aa) fasta scores: E(): 1.8e-58, 51.56% id in 287 aa, and to Thermoanaerobacter tengcongensis predicted metal-dependent membrane protease TTE0417 SWALL:Q8RCK9 (EMBL:AE013014) (302 aa) fasta scores: E(): 1.2e-27, 34.96% id in 266 aa, and to Streptococcus agalactiae hypothetical protein gbs1532 SWALL:Q8E470 (EMBL:AL766851) (306 aa) fasta scores: E(): 4.7e-18, 29.89% id in 281 aa; putative transmembrane protease 2132399 3285785 BF9343_1743 Bacteroides fragilis NCTC 9343 putative transmembrane protease YP_211461.1 2131554 D 272559 CDS YP_211462.1 60681318 3285782 complement(2132645..2133811) 1 NC_003228.3 no significant database matches; hypothetical protein 2133811 3285782 BF9343_1744 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211462.1 2132645 R 272559 CDS YP_211463.1 60681319 3285783 complement(2133817..2135946) 1 NC_003228.3 no significant database matches; hypothetical protein 2135946 3285783 BF9343_1745 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211463.1 2133817 R 272559 CDS YP_211464.1 60681320 3285793 complement(2135958..2136575) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1451 SWALL:Q8A7S3 (EMBL:AE016931) (195 aa) fasta scores: E(): 1.1e-17, 36.52% id in 167 aa; hypothetical protein 2136575 3285793 BF9343_1746 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211464.1 2135958 R 272559 CDS YP_211465.1 60681321 3285781 complement(2136629..2137498) 1 NC_003228.3 no significant database matches; putative transmembrane protein 2137498 3285781 BF9343_1747 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211465.1 2136629 R 272559 CDS YP_211466.1 60681322 3285792 complement(2137709..2137942) 1 NC_003228.3 no significant database matches; hypothetical protein 2137942 3285792 BF9343_1748 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211466.1 2137709 R 272559 CDS YP_211467.1 60681323 3285794 complement(2138237..2138398) 1 NC_003228.3 no significant database matches; hypothetical protein 2138398 3285794 BF9343_1749 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211467.1 2138237 R 272559 CDS YP_211468.1 60681324 3285790 2138576..2138821 1 NC_003228.3 no significant database matches; hypothetical protein 2138821 3285790 BF9343_1750 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211468.1 2138576 D 272559 CDS YP_211469.1 60681325 3285791 2138890..2140122 1 NC_003228.3 Similar to Bacteroides fragilis transposase BipH SWALL:Q9ZI85 (EMBL:AF038866) (410 aa) fasta scores: E(): 3.9e-87, 52.68% id in 410 aa, and to Bacteroides thetaiotaomicron integrase protein intdoT SWALL:Q93L62 (EMBL:AJ311171) (411 aa) fasta scores: E(): 2.3e-98, 60.34% id in 406 aa; putative bacteriophage integrase 2140122 3285791 BF9343_1751 Bacteroides fragilis NCTC 9343 putative bacteriophage integrase YP_211469.1 2138890 D 272559 CDS YP_211470.1 60681326 3285788 2140145..2140522 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4020 SWALL:AAO79125 (EMBL:AE016943) (124 aa) fasta scores: E(): 3.5e-09, 33.61% id in 119 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3137 SWALL:AAO78243 (EMBL:AE016939) (120 aa) fasta scores: E(): 1.2e-07, 36% id in 100 aa; hypothetical protein 2140522 3285788 BF9343_1752 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211470.1 2140145 D 272559 CDS YP_211471.1 60681327 3287885 2141547..2144312 1 NC_003228.3 Similar to Campylobacter jejuni type I restriction enzyme R protein HsdR SWALL:Q8RJ98 (EMBL:AF486635) (987 aa) fasta scores: E(): 2.1e-43, 40.94% id in 977 aa, and to Bacteroides thetaiotaomicron type I restriction enzyme EcoR124II R protein BT4535 SWALL:Q89Z42 (EMBL:AE016945) (942 aa) fasta scores: E(): 6.8e-162, 53.87% id in 956 aa, and to Staphylococcus aureus probable type I restriction enzyme restriction chain HsdR or mw0169 SWALL:Q8NYL9 (EMBL:AP004822) (929 aa) fasta scores: E(): 4.4e-135, 43.69% id in 920 aa; putative type I restriction enzyme R protein 2144312 hsdR 3287885 hsdR Bacteroides fragilis NCTC 9343 putative type I restriction enzyme R protein YP_211471.1 2141547 D 272559 CDS YP_211472.1 60681328 3285799 2144317..2145972 1 NC_003228.3 Similar to Bacillus cereus hypothetical protein bc0944 SWALL:Q81H77 (EMBL:AE017001) (527 aa) fasta scores: E(): 8.1e-35, 26.66% id in 525 aa; hypothetical protein 2145972 3285799 BF9343_1755 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211472.1 2144317 D 272559 CDS YP_211473.1 60681329 3289238 2145985..2147526 1 NC_003228.3 Similar to Lactococcus lactis type I restriction enzyme HsdM SWALL:Q9KIN3 (EMBL:AF228680) (537 aa) fasta scores: E(): 4.4e-82, 49.31% id in 511 aa, and to Bacteroides thetaiotaomicron type I restriction enzyme EcoR124II M protein BT4538 SWALL:Q89Z39 (EMBL:AE016945) (517 aa) fasta scores: E(): 5.1e-134, 68.6% id in 516 aa, and to Staphylococcus aureus Sa1626 protein sav1808 or sa1626 or HsdM or mw1751 SWALL:Q99T62 (EMBL:AP003363) (518 aa) fasta scores: E(): 3.9e-113, 56.77% id in 509 aa; putative type I restriction enzyme methylase 2147526 hsdM 3289238 hsdM Bacteroides fragilis NCTC 9343 putative type I restriction enzyme methylase YP_211473.1 2145985 D 272559 CDS YP_211474.1 60681330 3285800 2147559..2148677 1 NC_003228.3 N-terminus to codon 207 is similar to codon 200 to C-terminus of Lactococcus lactis type I restriction system HsdS SWALL:Q9KJE3 (EMBL:AF179848) (402 aa) fasta scores: E(): 4.3e-19, 32.14% id in 196 aa, and N-terminus to codon 207 is similar to codon 210 to C-terminus of Photorhabdus luminescens subsp. laumondii TTO1 type I restriction enzyme specificity protein HsdS or plu4320 SWALL:CAE16692 (EMBL:BX571873) (365 aa) fasta scores: E(): 5.7e-18, 38.88% id in 162 aa. Note: Nested inversion of invertible region rearranges two alternative modules for type I restriction-modification system S protein; putative type I restriction enzyme, partial 2148677 3285800 BF9343_1757 Bacteroides fragilis NCTC 9343 putative type I restriction enzyme, partial YP_211474.1 2147559 D 272559 CDS YP_211475.1 60681331 3285797 complement(2148670..>2149311) 1 NC_003228.3 Similar to N-terminus to codon 214 of Lactococcus lactis type I restriction enzyme system HsdS SWALL:Q9KIN2 (EMBL:AF228680) (421 aa) fasta scores: E(): 2.6e-17, 35.78% id in 204 aa, and to N-terminus to codon 214 of Vibrio vulnificus YJ016 restriction endonuclease S subunit VV0814 SWALL:BAC93578 (EMBL:AP005333) (433 aa) fasta scores: E(): 2.1e-19, 35.46% id in 203 aa. Note: Nested inversion of invertible region rearranges two alternative modules for type I RM system S protein; partial; putative type I restriction endonuclease specificity subunit, partial >2149311 3285797 BF9343_1758 Bacteroides fragilis NCTC 9343 putative type I restriction endonuclease specificity subunit, partial YP_211475.1 2148670 R 272559 CDS YP_211476.1 60681332 3285798 2149325..2149954 1 NC_003228.3 Similar to N-terminus to codon 203 of Lactococcus lactis subsp. lactis bv. diacetylactis specificity subunit HsdS SWALL:O52274 (EMBL:AF034786) (409 aa) fasta scores: E(): 7.4e-22, 39.39% id in 198 aa, and to N-terminus to codon 194 of Brucella melitensis type I restriction-modification system specificity subunit BmeII0450 SWALL:Q8YCS8 (EMBL:AE009681) (407 aa) fasta scores: E(): 1.2e-10, 26.34% id in 186 aa. Note: Nested inversion of invertible region rearranges two alternative modules for type I restriction-modification system S protein; putative type I restriction-modification system specificity system, partial 2149954 3285798 BF9343_1759 Bacteroides fragilis NCTC 9343 putative type I restriction-modification system specificity system, partial YP_211476.1 2149325 D 272559 CDS YP_211477.1 60681333 3285796 complement(2149947..2151077) 1 NC_003228.3 N-terminal 198 codons are similar to codon 210 to the C-terminus of Lactococcus lactis type IC specificity subunit HsdS SWALL:O54432 (EMBL:U90222) (405 aa) fasta scores: E(): 3.6e-17, 35.35% id in 198 aa, and codons 190 to the C-terminus are similar to N-terminal 193 codons of Streptococcus pyogenes putative type I site-specific deoxyribonuclease HsdS or SPY1905 SWALL:Q99Y25 (EMBL:AE006615) (399 aa) fasta scores: E(): 2e-19, 42.93% id in 184 aa. Note: The Nested inversion of invertible region rearranges two alternative modules for type I restriction-modification system S protein.; putative type IC restriction-modification system specificity subunit, partial 2151077 3285796 BF9343_1760 Bacteroides fragilis NCTC 9343 putative type IC restriction-modification system specificity subunit, partial YP_211477.1 2149947 R 272559 CDS YP_211478.1 60681334 3285795 2151160..2152077 1 NC_003228.3 Similar to Enterococcus faecalis integrase Int410 SWALL:Q93A40 (EMBL:AF430807) (396 aa) fasta scores: E(): 1.6e-14, 30.66% id in 300 aa, and to Bacteroides thetaiotaomicron transposase BT4544 SWALL:AAO79649 (EMBL:AE016945) (308 aa) fasta scores: E(): 9.8e-77, 60.72% id in 303 aa, and to Enterococcus faecalis site-specific recombinase, phage integrase family ef2255 SWALL:AAO81984 (EMBL:AE016954) (369 aa) fasta scores: E(): 2e-25, 32.78% id in 305 aa; putative phage integrase/recombinase 2152077 3285795 BF9343_1761 Bacteroides fragilis NCTC 9343 putative phage integrase/recombinase YP_211478.1 2151160 D 272559 CDS YP_211479.1 60681335 3285806 2152992..2153396 1 NC_003228.3 no significant database matches; hypothetical protein 2153396 3285806 BF9343_1762 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211479.1 2152992 D 272559 CDS YP_211480.1 60681336 3285805 2153557..2154771 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transposase BT4015 SWALL:AAO79120 (EMBL:AE016943) (402 aa) fasta scores: E(): 9e-46, 35.78% id in 408 aa, and to Bacteroides thetaiotaomicron integrase BT0036 SWALL:AAO75143 (EMBL:AE016926) (403 aa) fasta scores: E(): 2.9e-45, 38.34% id in 399 aa, and to Bacteroides thetaiotaomicron transposase BT2654 SWALL:AAO77761 (EMBL:AE016936) (403 aa) fasta scores: E(): 4.2e-43, 36.15% id in 390 aa; putative integrase/transposase 2154771 3285805 BF9343_1763 Bacteroides fragilis NCTC 9343 putative integrase/transposase YP_211480.1 2153557 D 272559 CDS YP_211481.1 60681337 3285803 complement(2155169..2155384) 1 NC_003228.3 no significant database matches; hypothetical protein 2155384 3285803 BF9343_1764 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211481.1 2155169 R 272559 CDS YP_211482.1 60681338 3285804 2155394..2155960 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4234 SWALL:AAO79339 (EMBL:AE016944) (189 aa) fasta scores: E(): 1.3e-25, 39.58% id in 192 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1451 SWALL:AAO76558 (EMBL:AE016931) (195 aa) fasta scores: E(): 1.1e-24, 42.07% id in 164 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1066 SWALL:AAO76173 (EMBL:AE016930) (189 aa) fasta scores: E(): 1.1e-22, 37.3% id in 193 aa; hypothetical protein 2155960 3285804 BF9343_1765 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211482.1 2155394 D 272559 CDS YP_211483.1 60681339 3285801 2155974..2157086 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1452 SWALL:AAO76559 (EMBL:AE016931) (484 aa) fasta scores: E(): 1.2e-13, 26.3% id in 327 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4233 SWALL:AAO79338 (EMBL:AE016944) (484 aa) fasta scores: E(): 3.6e-11, 24.73% id in 376 aa, and to Porphyromonas gingivalis immunoreactive 53 kDa antigen PG123 SWALL:Q9X6S8 (EMBL:AF144641) (479 aa) fasta scores: E(): 4.1e-11, 23.51% id in 370 aa; hypothetical protein 2157086 3285801 BF9343_1766 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211483.1 2155974 D 272559 CDS YP_211484.1 60681340 3285802 2157091..2158227 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron clostripain-related protein BT1308 SWALL:AAO76415 (EMBL:AE016931) (399 aa) fasta scores: E(): 2.8e-16, 26.77% id in 381 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0727 SWALL:AAO75834 (EMBL:AE016928) (393 aa) fasta scores: E(): 1.6e-08, 24.03% id in 362 aa; hypothetical protein 2158227 3285802 BF9343_1767 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211484.1 2157091 D 272559 CDS YP_211485.1 60681341 3285812 2158466..2160115 1 NC_003228.3 no significant database matches; hypothetical protein 2160115 3285812 BF9343_1768 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211485.1 2158466 D 272559 CDS YP_211486.1 60681342 3285813 2160180..2161133 1 NC_003228.3 no significant database matches; hypothetical protein 2161133 3285813 BF9343_1769 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211486.1 2160180 D 272559 CDS YP_211487.1 60681343 3285810 2161139..2162725 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT1067 SWALL:AAO76174 (EMBL:AE016930) (608 aa) fasta scores: E(): 0.0036, 25.05% id in 439 aa; possible ATP/GTP-binding chaperonin 2162725 3285810 BF9343_1770 Bacteroides fragilis NCTC 9343 possible ATP/GTP-binding chaperonin YP_211487.1 2161139 D 272559 CDS YP_211488.1 60681344 3285811 2162750..2163871 1 NC_003228.3 no significant database matches; hypothetical protein 2163871 3285811 BF9343_1771 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211488.1 2162750 D 272559 CDS YP_211489.1 60681345 3285809 2163899..2164879 1 NC_003228.3 no significant database matches; hypothetical protein 2164879 3285809 BF9343_1772 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211489.1 2163899 D 272559 CDS YP_211490.1 60681346 3285808 2164933..2165877 1 NC_003228.3 no significant database matches; hypothetical protein 2165877 3285808 BF9343_1773 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211490.1 2164933 D 272559 CDS YP_211491.1 60681347 3285819 2165904..2166839 1 NC_003228.3 no significant database matches; hypothetical protein 2166839 3285819 BF9343_1774 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211491.1 2165904 D 272559 CDS YP_211492.1 60681348 3285807 2166852..2167853 1 NC_003228.3 no significant database matches; hypothetical protein 2167853 3285807 BF9343_1775 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211492.1 2166852 D 272559 CDS YP_211493.1 60681349 3285817 2167857..2168840 1 NC_003228.3 no significant database matches; hypothetical protein 2168840 3285817 BF9343_1776 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211493.1 2167857 D 272559 CDS YP_211494.1 60681350 3285818 2168865..2169866 1 NC_003228.3 no significant database matches; hypothetical protein 2169866 3285818 BF9343_1777 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211494.1 2168865 D 272559 CDS YP_211495.1 60681351 3285815 2169889..2170947 1 NC_003228.3 no significant database matches; hypothetical protein 2170947 3285815 BF9343_1778 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211495.1 2169889 D 272559 CDS YP_211496.1 60681352 3285816 2170963..2171889 1 NC_003228.3 no significant database matches; hypothetical protein 2171889 3285816 BF9343_1779 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211496.1 2170963 D 272559 CDS YP_211497.1 60681353 3285825 2171908..2173479 1 NC_003228.3 no significant database matches; hypothetical protein 2173479 3285825 BF9343_1780 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211497.1 2171908 D 272559 CDS YP_211498.1 60681354 3285814 2173523..2174593 1 NC_003228.3 no significant database matches; hypothetical protein 2174593 3285814 BF9343_1781 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211498.1 2173523 D 272559 CDS YP_211499.1 60681355 3285823 2174605..2175546 1 NC_003228.3 no significant database matches; hypothetical protein 2175546 3285823 BF9343_1782 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211499.1 2174605 D 272559 CDS YP_211500.1 60681356 3285824 2175587..2177119 1 NC_003228.3 no significant database matches; hypothetical protein 2177119 3285824 BF9343_1783 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211500.1 2175587 D 272559 CDS YP_211501.1 60681357 3285821 2177132..2178079 1 NC_003228.3 no significant database matches; hypothetical protein 2178079 3285821 BF9343_1784 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211501.1 2177132 D 272559 CDS YP_211502.1 60681358 3285822 2178174..2179358 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1064 SWALL:AAO76171 (EMBL:AE016930) (392 aa) fasta scores: E(): 1.6e-22, 29.29% id in 338 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4233 SWALL:AAO79338 (EMBL:AE016944) (484 aa) fasta scores: E(): 3.5e-22, 30.65% id in 323 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1452 SWALL:AAO76559 (EMBL:AE016931) (484 aa) fasta scores: E(): 5.5e-16, 26.66% id in 330 aa; hypothetical protein 2179358 3285822 BF9343_1785 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211502.1 2178174 D 272559 CDS YP_211503.1 60681359 3285831 2179495..2181495 1 NC_003228.3 no significant database matches; hypothetical protein 2181495 3285831 BF9343_1786 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211503.1 2179495 D 272559 CDS YP_211504.1 60681360 3285820 2181501..2181869 1 NC_003228.3 no significant database matches; hypothetical protein 2181869 3285820 BF9343_1787 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211504.1 2181501 D 272559 CDS YP_211505.1 60681361 3286831 2181911..2182894 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1485 SWALL:AAO76592 (EMBL:AE016932) (311 aa) fasta scores: E(): 2e-41, 39.67% id in 305 aa; hypothetical protein 2182894 3286831 BF9343_1788 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211505.1 2181911 D 272559 CDS YP_211506.1 60681362 3285829 complement(2183028..2185151) 1 NC_003228.3 Similar to Neisseria meningitidis hypothetical protein NMB0075 SWALL:YHGF_NEIMB (SWALL:Q51152) (757 aa) fasta scores: E(): 2.9e-115, 47.95% id in 709 aa, and to Bacteroides thetaiotaomicron putative RNA binding protein with S1 RNA-binding domain BT1238 SWALL:AAO76345 (EMBL:AE016931) (724 aa) fasta scores: E(): 0, 82.1% id in 704 aa, and to Staphylococcus aureus hypothetical protein sav2063 or sa1868 SWALL:Q99SI9 (EMBL:AP003364) (716 aa) fasta scores: E(): 5.4e-116, 47.48% id in 695 aa; putative RNA-binding protein 2185151 3285829 BF9343_1789 Bacteroides fragilis NCTC 9343 putative RNA-binding protein YP_211506.1 2183028 R 272559 CDS YP_211507.1 60681363 3285830 2185269..2187182 1 NC_003228.3 Codons 390 to 640 are similar to codons 355 to 610 of Synechococcus elongatus circadian input kinase cikA SWALL:Q9KHI5 (EMBL:AF258464) (754 aa) fasta scores: E(): 1.9e-24, 38.91% id in 257 aa, and entire protein is similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1237 SWALL:AAO76344 (EMBL:AE016931) (641 aa) fasta scores: E(): 5.8e-158, 63.11% id in 610 aa, and to Bacteroides thetaiotaomicron two-component sensor histidine kinase BT0654 SWALL:AAO75761 (EMBL:AE016928) (660 aa) fasta scores: E(): 8.4e-53, 41.84% id in 650 aa; putative two-component histidine sensor kinase 2187182 3285830 BF9343_1790 Bacteroides fragilis NCTC 9343 putative two-component histidine sensor kinase YP_211507.1 2185269 D 272559 CDS YP_211508.1 60681364 3285827 2187290..2189038 1 NC_003228.3 Similar to Clostridium perfringens 2', 3'-cyclic nucleotide 2'-phosphodiesterase cpd SWALL:Q9XDU1 (EMBL:AB028630) (865 aa) fasta scores: E(): 6.3e-20, 26.3% id in 574 aa, and to Bacteroides thetaiotaomicron 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor BT1236 SWALL:AAO76343 (EMBL:AE016931) (580 aa) fasta scores: E(): 4.6e-199, 83.18% id in 577 aa. Possible alternative start site at codon 4; putative 2', 3'-cyclic nucleotide 2'-phosphodiesterase 2189038 3285827 BF9343_1791 Bacteroides fragilis NCTC 9343 putative 2', 3'-cyclic nucleotide 2'-phosphodiesterase YP_211508.1 2187290 D 272559 CDS YP_211509.1 60681365 3285828 2189045..2189518 1 NC_003228.3 Similar to Dictyostelium discoideum GafA SWALL:Q8MTJ7 (EMBL:AY099028) (158 aa) fasta scores: E(): 1.1e-41, 69.07% id in 152 aa, and to Bacteroides thetaiotaomicron GAF domain-containing protein, involved in signal transduction BT1810 SWALL:AAO76917 (EMBL:AE016933) (156 aa) fasta scores: E(): 4.2e-42, 67.09% id in 155 aa; putative GAF-domain signal transduction protein 2189518 3285828 BF9343_1792 Bacteroides fragilis NCTC 9343 putative GAF-domain signal transduction protein YP_211509.1 2189045 D 272559 CDS YP_211510.1 60681366 3285837 2189556..2189894 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0501 SWALL:AAO75608 (EMBL:AE016928) (110 aa) fasta scores: E(): 1.2e-06, 37.25% id in 102 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0503 SWALL:AAO75610 (EMBL:AE016928) (113 aa) fasta scores: E(): 2e-06, 36.13% id in 119 aa; hypothetical protein 2189894 3285837 BF9343_1793 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211510.1 2189556 D 272559 CDS YP_211511.1 60681367 3285826 2190098..2192389 1 NC_003228.3 Similar to Vibrio vulnificus heme receptor HupA SWALL:O85161 (EMBL:AF047484) (712 aa) fasta scores: E(): 1.8e-08, 21.81% id in 628 aa, and to Bacteroides thetaiotaomicron tonB-dependent outer membrane receptor BT0502 SWALL:AAO75609 (EMBL:AE016928) (775 aa) fasta scores: E(): 2.4e-148, 48% id in 777 aa, and to Bacteroides thetaiotaomicron tonB-dependent outer membrane receptor BT0504 SWALL:AAO75611 (EMBL:AE016928) (779 aa) fasta scores: E(): 2.1e-130, 47.43% id in 780 aa; putative TonB-dependent outer membrane protein 2192389 3285826 BF9343_1794 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane protein YP_211511.1 2190098 D 272559 CDS YP_211512.1 60681368 3285835 2192449..2193210 1 NC_003228.3 Similar to Anabaena sp. hypothetical protein Alr1374 SWALL:Q8YX43 (EMBL:AP003585) (262 aa) fasta scores: E(): 1.6e-12, 30.54% id in 239 aa, and to Listeria monocytogenes hypothetical protein LMO1968 SWALL:Q8Y5T7 (EMBL:AL591981) (247 aa) fasta scores: E(): 6.7e-12, 31% id in 258 aa; hypothetical protein 2193210 3285835 BF9343_1795 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211512.1 2192449 D 272559 CDS YP_211513.1 60681369 3285836 complement(2193383..2193964) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1234 SWALL:AAO76341 (EMBL:AE016931) (194 aa) fasta scores: E(): 8.5e-55, 74.73% id in 190 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative regulatory protein with a cAMP-binding domain BT1545 SWALL:AAO76652 (EMBL:AE016932) (187 aa) fasta scores: E(): 1.8e-14, 32.63% id in 190 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, with a cAMP-binding domain BT1117 SWALL:AAO76224 (EMBL:AE016930) (121 aa) fasta scores: E(): 1.1e-10, 37.37% id in 99 aa; putative DNA-binding cyclic-nucleotide binding protein 2193964 3285836 BF9343_1796 Bacteroides fragilis NCTC 9343 putative DNA-binding cyclic-nucleotide binding protein YP_211513.1 2193383 R 272559 CDS YP_211514.1 60681370 3285833 2194537..2195898 1 NC_003228.3 Similar to Clostridium difficile EffD SWALL:Q93QZ3 (EMBL:AF109075) (440 aa) fasta scores: E(): 2.2e-25, 25.22% id in 444 aa, and to Bacteroides thetaiotaomicron cation efflux pump BT2377 SWALL:Q8A565 (EMBL:AE016935) (457 aa) fasta scores: E(): 4.1e-130, 77.72% id in 449 aa, and to Clostridium tetani Na+ driven multidrug efflux pump CTC02405 SWALL:Q891H1 (EMBL:AE015944) (452 aa) fasta scores: E(): 3.1e-75, 46.32% id in 449 aa; putative transmembrane Na+ driven efflux protein 2195898 3285833 BF9343_1797 Bacteroides fragilis NCTC 9343 putative transmembrane Na+ driven efflux protein YP_211514.1 2194537 D 272559 CDS YP_211515.1 60681371 3285834 2196544..2196990 1 NC_003228.3 no significant database matches; hypothetical protein 2196990 3285834 BF9343_1798 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211515.1 2196544 D 272559 CDS YP_211516.1 60681372 3285843 2197102..2198454 1 NC_003228.3 Similar to Bacillus halodurans hypothetical protein BH2936 SWALL:Q9K8R7 (EMBL:AP001517) (452 aa) fasta scores: E(): 2.7e-70, 41.7% id in 446 aa, and to Fusobacterium nucleatum Na+ driven multidrug efflux pump FN0162 SWALL:Q8RGW5 (EMBL:AE010530) (446 aa) fasta scores: E(): 1.3e-65, 39.04% id in 438 aa, and to Bacillus subtilis hypothetical protein YisQ or YucE SWALL:O07940 (EMBL:Y09476) (455 aa) fasta scores: E(): 1.9e-64, 39.58% id in 432 aa; putative transmembrane transport efflux protein 2198454 3285843 BF9343_1799 Bacteroides fragilis NCTC 9343 putative transmembrane transport efflux protein YP_211516.1 2197102 D 272559 CDS YP_211517.1 60681373 3285832 2198540..2200201 1 NC_003228.3 Similar to Tetragenococcus halophilus aspartate:alanine antiporter AspT SWALL:Q8L3K8 (EMBL:AB072729) (543 aa) fasta scores: E(): 3.9e-15, 21.44% id in 541 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative membrane protein BT1229 SWALL:AAO76336 (EMBL:AE016931) (555 aa) fasta scores: E(): 3.6e-189, 90.07% id in 554 aa, and to Bacteroides thetaiotaomicron putative membrane protein BT2092 SWALL:AAO77199 (EMBL:AE016934) (554 aa) fasta scores: E(): 4.7e-97, 47.23% id in 561 aa; putative antiporter 2200201 3285832 BF9343_1800 Bacteroides fragilis NCTC 9343 putative antiporter YP_211517.1 2198540 D 272559 CDS YP_211518.1 60681374 3285842 2200250..2202244 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron fructose-1,6-bisphosphatase BT1228 SWALL:AAO76335 (EMBL:AE016931) (664 aa) fasta scores: E(): 0, 89.75% id in 664 aa, and to Clostridium tetani fructose-1,6-bisphosphatase CTC00604 SWALL:AAO35219 (EMBL:AE015938) (662 aa) fasta scores: E(): 5.7e-162, 60.3% id in 650 aa, and to Clostridium acetobutylicum fructose-1,6-bisphosphatase CAC1572 SWALL:Q97IR8 (EMBL:AE007667) (665 aa) fasta scores: E(): 4.5e-160, 60.54% id in 664 aa; hypothetical protein 2202244 3285842 BF9343_1801 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211518.1 2200250 D 272559 CDS YP_211519.1 60681375 3285672 complement(2202336..2203493) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 40.9 kDa protein SWALL:Q8VU16 (EMBL:AF285774) (385 aa) fasta scores: E(): 4.2e-139, 100% id in 385 aa, and similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1227 SWALL:AAO76334 (EMBL:AE016931) (382 aa) fasta scores: E(): 1e-90, 63.7% id in 383 aa, and to Myxococcus xanthus ActE SWALL:Q93P55 (EMBL:AF350253) (375 aa) fasta scores: E(): 3.8e-11, 29.53% id in 281 aa; hypothetical protein 2203493 3285672 BF9343_1802 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211519.1 2202336 R 272559 CDS YP_211520.1 60681376 3285840 complement(2203602..2205260) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 62.6 kDa protein SWALL:Q8VU15 (EMBL:AF285774) (552 aa) fasta scores: E(): 1.6e-217, 100% id in 552 aa, and similar to Bacteroides thetaiotaomicron putative long-chain-fatty-acid--CoA ligase BT1226 SWALL:Q8A8E1 (EMBL:AE016931) (552 aa) fasta scores: E(): 2.7e-204, 92.93% id in 552 aa, and to Bacteroides thetaiotaomicron putative long-chain-fatty-acid--CoA ligase BT0684 SWALL:Q8A9Y1 (EMBL:AE016928) (554 aa) fasta scores: E(): 7.9e-159, 70.23% id in 551 aa; hypothetical protein 2205260 3285840 BF9343_1803 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211520.1 2203602 R 272559 CDS YP_211521.1 60681377 3285174 complement(2205454..2206536) 1 NC_003228.3 Similar to Escherichia coli GDP-L-fucose synthetase Fcl or WcaG or B2052 SWALL:FCL_ECOLI (SWALL:P32055) (321 aa) fasta scores: E(): 9.6e-39, 47.6% id in 355 aa, and identical to previously sequenced Bacteroides fragilis GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase fcl SWALL:Q8VU14 (EMBL:AF285774) (360 aa) fasta scores: E(): 5.4e-147, 100% id in 360 aa, and similar to Bacteroides thetaiotaomicron GDP-fucose synthetase BT1225 SWALL:AAO76332 (EMBL:AE016931) (356 aa) fasta scores: E(): 1.8e-132, 89.85% id in 355 aa; putative GDP-L-fucose synthetase 2206536 fcl 3285174 fcl Bacteroides fragilis NCTC 9343 putative GDP-L-fucose synthetase YP_211521.1 2205454 R 272559 CDS YP_211522.1 60681378 3285841 complement(2206529..2207602) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis Gmd GDP-mannose 4,6-dehydratase SWALL:Q8VU13 (EMBL:AF285774) (357 aa) fasta scores: E(): 7.8e-142, 100% id in 357 aa, and similar to Bacteroides thetaiotaomicron GDP-mannose 4,6-dehydratase BT1224 SWALL:Q8A8E3 (EMBL:AE016931) (356 aa) fasta scores: E(): 5.9e-132, 93.25% id in 356 aa, and to Porphyromonas gingivalis W83 GDP-mannose 4,6-dehydratase Gmd or PG1288 SWALL:AAQ66366 (EMBL:AE017176) (361 aa) fasta scores: E(): 6.4e-118, 83.9% id in 348 aa; putative GDP mannose 4,6-dehydratase 2207602 3285841 BF9343_1805 Bacteroides fragilis NCTC 9343 putative GDP mannose 4,6-dehydratase YP_211522.1 2206529 R 272559 CDS YP_211523.1 60681379 3285838 2207816..2209087 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 49.2 kDa protein SWALL:Q8VU12 (EMBL:AF285774) (423 aa) fasta scores: E(): 2.1e-171, 100% id in 423 aa, and similar to Fusobacterium nucleatum ATPase FN1382 SWALL:Q8RDW2 (EMBL:AE010642) (402 aa) fasta scores: E(): 1.9e-37, 33.24% id in 397 aa, and to Bacteroides thetaiotaomicron ATPase BT3548 SWALL:AAO78654 (EMBL:AE016941) (404 aa) fasta scores: E(): 3.9e-33, 30.32% id in 399 aa; hypothetical protein 2209087 3285838 BF9343_1806 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211523.1 2207816 D 272559 CDS YP_211524.1 60681380 3285839 complement(2209381..2210184) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 30.1 kDa protein SWALL:Q8VU11 (EMBL:AF285774) (267 aa) fasta scores: E(): 4e-105, 100% id in 267 aa, and similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0592 SWALL:AAO75699 (EMBL:AE016928) (261 aa) fasta scores: E(): 2.1e-40, 44.65% id in 262 aa, and similar to Bacteroides fragilis hypothetical 30.9 kDa protein SWALL:Q8VST0 (EMBL:AF366394) (277 aa) fasta scores: E(): 4.1e-38, 64.38% id in 278 aa; hypothetical protein 2210184 3285839 BF9343_1807 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211524.1 2209381 R 272559 CDS YP_211525.1 60681381 3285677 complement(2210234..2210581) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 13.9 kDa protein SWALL:Q8VU10 (EMBL:AF285774) (115 aa) fasta scores: E(): 2.1e-44, 100% id in 115 aa, and similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0593 SWALL:AAO75700 (EMBL:AE016928) (121 aa) fasta scores: E(): 5.3e-17, 42.14% id in 121 aa; hypothetical protein 2210581 3285677 BF9343_1808 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211525.1 2210234 R 272559 CDS YP_211526.1 60681382 3285678 complement(2210722..2211060) 1 NC_003228.3 no significant database matches; hypothetical protein 2211060 3285678 BF9343_1809 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211526.1 2210722 R 272559 CDS YP_211527.1 60681383 3289438 2211582..2212106 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative transcriptional regulatory protein UpbY SWALL:Q9F769 (EMBL:AF285774) (174 aa) fasta scores: E(): 6.7e-67, 100% id in 174 aa, and similar to UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 4.9e-44, 67.81% id in 174 aa; putative LPS biosynthesis related transcriptional regulatory protein 2212106 upbY 3289438 upbY Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related transcriptional regulatory protein YP_211527.1 2211582 D 272559 CDS YP_211528.1 60681384 3287523 2212110..2212595 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 18.5 kDa protein UpbZ SWALL:Q9F768 (EMBL:AF285774) (161 aa) fasta scores: E(): 5.3e-64, 100% id in 161 aa, and similar to UpaZ SWALL:Q93QW5 (EMBL:AF189282) (157 aa) fasta scores: E(): 4.9e-39, 64.74% id in 156 aa; putative LPS biosynthesis related transcriptional regulatory protein 2212595 upbZ 3287523 upbZ Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related transcriptional regulatory protein YP_211528.1 2212110 D 272559 CDS YP_211529.1 60681385 3287204 2212592..2213875 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 48.4 kDa protein WcfT SWALL:Q9F767 (EMBL:AF285774) (427 aa) fasta scores: E(): 9.9e-163, 100% id in 427 aa, and similar to Caulobacter crescentus hypothetical protein CC0651 SWALL:Q9AAF0 (EMBL:AE005741) (436 aa) fasta scores: E(): 7.6e-59, 40.56% id in 424 aa; putative LPS biosynthesis related membrane protein 2213875 wcfT 3287204 wcfT Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related membrane protein YP_211529.1 2212592 D 272559 CDS YP_211530.1 60681386 3287199 2213868..2214587 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative glucose-1-P-cytidylyltransferase WcfU SWALL:Q9F766 (EMBL:AF285774) (239 aa) fasta scores: E(): 2.7e-92, 100% id in 239 aa, and similar to Clostridium tetani putative nucleotidyl transferase CTC01704 SWALL:AAO36239 (EMBL:AE015942) (318 aa) fasta scores: E(): 2.7e-23, 38.81% id in 237 aa; putative glucose-1-P-cytidylyltransferase 2214587 wcfU 3287199 wcfU Bacteroides fragilis NCTC 9343 putative glucose-1-P-cytidylyltransferase YP_211530.1 2213868 D 272559 CDS YP_211531.1 60681387 3289093 2214607..2215908 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative phosphoenolpyruvate phosphomutase AepX SWALL:Q9F765 (EMBL:AF285774) (433 aa) fasta scores: E(): 4e-163, 100% id in 433 aa, and similar to Streptomyces wedmorensis phosphoenolpyruvate phosphomutase Fom1 SWALL:P96074 (EMBL:AB016934) (435 aa) fasta scores: E(): 1.1e-94, 59.15% id in 426 aa; putative LPS biosynthesis related phosphoenolpyruvate phosphomutase 2215908 aepX 3289093 aepX Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related phosphoenolpyruvate phosphomutase YP_211531.1 2214607 D 272559 CDS YP_211532.1 60681388 3289070 2215920..2217056 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative phosphoenolpyruvate decarboxylase AepY SWALL:Q9F764 (EMBL:AF285774) (378 aa) fasta scores: E(): 3.7e-149, 100% id in 378 aa, and similar to Streptomyces viridochromogenes 3-phosphonopyruvate decarboxylase Ppd SWALL:PPD_STRVR (SWALL:O86938) (397 aa) fasta scores: E(): 1.1e-25, 33.41% id in 389 aa; putative LPS biosynthesis related phosphoenolpyruvate decarboxylase 2217056 aepY 3289070 aepY Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related phosphoenolpyruvate decarboxylase YP_211532.1 2215920 D 272559 CDS YP_211533.1 60681389 3289098 2217053..2218153 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative 2-aminoethylphosphonate pyruvate aminotransferase AepZ SWALL:Q9F763 (EMBL:AF285774) (366 aa) fasta scores: E(): 3.7e-149, 100% id in 366 aa, and similar to Clostridium tetani CTC01700 SWALL:AAO36235 (EMBL:AE015942) (375 aa) fasta scores: E(): 4.5e-109, 71.7% id in 364 aa; putative LPS biosynthesis related 2-aminoethylphosphonate pyruvate aminotransferase 2218153 aepZ 3289098 aepZ Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related 2-aminoethylphosphonate pyruvate aminotransferase YP_211533.1 2217053 D 272559 CDS YP_211534.1 60681390 3287512 2218173..2219666 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative flippase Wzx SWALL:Q9F762 (EMBL:AF285774) (497 aa) fasta scores: E(): 2.4e-185, 100% id in 497 aa, and similar to Clostridium perfringens probable flippase CPE0505 SWALL:Q8XN33 (EMBL:AP003187) (506 aa) fasta scores: E(): 2.6e-11, 21.87% id in 512 aa. Note: Does not appear to have similarities in B. thetaiotaomicron; putative LPS biosynthesis related flippase 2219666 wzx 3287512 wzx Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related flippase YP_211534.1 2218173 D 272559 CDS YP_211535.1 60681391 3287435 2219670..2220815 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 44.4 kDa protein WcfV SWALL:Q9F761 (EMBL:AF285774) (381 aa) fasta scores: E(): 9.2e-151, 100% id in 381 aa; hypothetical protein 2220815 wcfV 3287435 wcfV Bacteroides fragilis NCTC 9343 hypothetical protein YP_211535.1 2219670 D 272559 CDS YP_211536.1 60681392 3287215 2220812..2221681 1 NC_003228.3 Identical to previously sequenced to Bacteroides fragilis putative alpha-1,2-fucosyltransferase WcfW SWALL:Q9F760 (EMBL:AF285774) (289 aa) fasta scores: E(): 4.3e-123, 100% id in 289 aa, and similar to Escherichia coli putative fucosyltransferase WbgN SWALL:Q8VQ46 (EMBL:AF461121) (290 aa) fasta scores: E(): 2e-18, 30.32% id in 310 aa; putative LPS biosynthesis related alpha-1,2-fucosyltransferase 2221681 wcfW 3287215 wcfW Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related alpha-1,2-fucosyltransferase YP_211536.1 2220812 D 272559 CDS YP_211537.1 60681393 3287216 2221689..2222741 1 NC_003228.3 Identical to previously sequenced to Bacteroides fragilis putative UDP-glucuronic acid epimerase WcfX SWALL:Q9F759 (EMBL:AF285774) (350 aa) fasta scores: E(): 6e-139, 100% id in 350 aa, and similar to Escherichia coli WbnF SWALL:Q9RP53 (EMBL:AF172324) (334 aa) fasta scores: E(): 6.1e-69, 58.57% id in 350 aa; putative LPS biosynthesis related UDP-glucuronic acid epimerase 2222741 wcfX 3287216 wcfX Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related UDP-glucuronic acid epimerase YP_211537.1 2221689 D 272559 CDS YP_211538.1 60681394 3287139 2222744..2224066 1 NC_003228.3 Identical to previously sequenced to Bacteroides fragilis putative UDP-glucose dehydrogenase WcfY SWALL:Q9F758 (EMBL:AF285774) (440 aa) fasta scores: E(): 5.4e-166, 100% id in 440 aa, and similar to Rhizobium meliloti UDP-glucose 6-dehydrogenase RkpK or R01082 or SMC02641 SWALL:UDG_RHIME (SWALL:O54068) (437 aa) fasta scores: E(): 4.8e-73, 47.38% id in 439 aa; putative LPS biosynthesis related UDP-glucose dehydrogenase 2224066 wcfY 3287139 wcfY Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related UDP-glucose dehydrogenase YP_211538.1 2222744 D 272559 CDS YP_211539.1 60681395 3287415 2224350..2225372 1 NC_003228.3 Identical to previously sequenced to Bacteroides fragilis putative glycosyltransferase WcfZ SWALL:Q9F757 (EMBL:AF285774) (340 aa) fasta scores: E(): 3e-132, 100% id in 340 aa, and similar to Haemophilus influenzae putative glycosyl transferase HI1578 SWALL:YF78_HAEIN (SWALL:Q57287) (323 aa) fasta scores: E(): 2.7e-24, 31.32% id in 332 aa; putative LPS biosynthesis related glycosyltransferase 2225372 wcfZ 3287415 wcfZ Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_211539.1 2224350 D 272559 CDS YP_211540.1 60681396 3287229 2225402..2226448 1 NC_003228.3 Identical to previously sequenced to Bacteroides fragilis putative glycosyltransferase WcgQ SWALL:Q9F756 (EMBL:AF285774) (348 aa) fasta scores: E(): 6.2e-136, 100% id in 348 aa, and similar to Streptococcus pneumoniae glycosyl transferase, family 2 SP1365 SWALL:Q97Q65 (EMBL:AE007434) (328 aa) fasta scores: E(): 1.4e-18, 30% id in 330 aa; putative LPS biosynthesis related glycosyltransferase 2226448 wcgQ 3287229 wcgQ Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_211540.1 2225402 D 272559 CDS YP_211541.1 60681397 3287321 2226445..2227575 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative polymerase Wzy SWALL:Q9F755 (EMBL:AF285774) (376 aa) fasta scores: E(): 4.2e-148, 100% id in 376 aa, and similar to Streptococcus suis Cps1H SWALL:Q9RG47 (EMBL:AF155804) (388 aa) fasta scores: E(): 3.9e-08, 24.39% id in 373 aa; putative LPS biosynthesis related polymerase 2227575 wzy 3287321 wzy Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related polymerase YP_211541.1 2226445 D 272559 CDS YP_211542.1 60681398 3287235 2227547..2228662 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative glycosyltransferase WcgR SWALL:Q9F754 (EMBL:AF285774) (371 aa) fasta scores: E(): 3.7e-147, 100% id in 371 aa, and similar to Escherichia coli putative galactosyltransferase WbgM SWALL:Q8VQ50 (EMBL:AF461121) (364 aa) fasta scores: E(): 3.2e-10, 23.44% id in 337 aa; putative LPS biosynthesis related glycosyltransferase 2228662 wcgR 3287235 wcgR Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_211542.1 2227547 D 272559 CDS YP_211543.1 60681399 3287228 2228655..2229671 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative dehydratase WcgS SWALL:Q9F753 (EMBL:AF285774) (338 aa) fasta scores: E(): 2.8e-127, 100% id in 338 aa, and similar to Escherichia coli Fnl1 protein SWALL:Q8GNF3 (EMBL:AF529080) (344 aa) fasta scores: E(): 3.7e-87, 70.87% id in 333 aa; putative LPS biosynthesis related dehydratase 2229671 wcgS 3287228 wcgS Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related dehydratase YP_211543.1 2228655 D 272559 CDS YP_211544.1 60681400 3287515 2229659..2230789 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative epimerase WcgT SWALL:Q9F752 (EMBL:AF285774) (376 aa) fasta scores: E(): 4.1e-139, 100% id in 376 aa, and similar to Vibrio cholerae O37 UDP-N-acetylglucosamine 2-epimerase SWALL:Q8L346 (EMBL:AF390573) (377 aa) fasta scores: E(): 1.9e-83, 58.71% id in 373 aa; putative LPS biosynthesis related epimerase 2230789 wcgT 3287515 wcgT Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related epimerase YP_211544.1 2229659 D 272559 CDS YP_211545.1 60681401 3287597 2230810..2231673 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative reductase WcgU SWALL:Q9F751 (EMBL:AF285774) (287 aa) fasta scores: E(): 9.2e-116, 100% id in 287 aa, and similar to Vibrio cholerae O37 DTDP-4-dehydrorhamnose reductase SWALL:Q8L347 (EMBL:AF390573) (290 aa) fasta scores: E(): 6.2e-25, 37.87% id in 264 aa; putative LPS biosynthesis related reductase 2231673 wcgU 3287597 wcgU Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related reductase YP_211545.1 2230810 D 272559 CDS YP_211546.1 60681402 3287469 2231670..2232881 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative glycosyltransferase WcgV SWALL:Q9F750 (EMBL:AF285774) (403 aa) fasta scores: E(): 2.2e-158, 100% id in 403 aa, similar to Streptococcus pneumoniae WciJ SWALL:Q9AHD0 (EMBL:AF316639) (409 aa) fasta scores: E(): 1.4e-47, 36.62% id in 415 aa, and to Escherichia coli putative colanic acid biosynthesis glycosyl transferase WcaI or B2050 SWALL:WCAI_ECOLI (SWALL:P32057) (407 aa) fasta scores: E(): 4.3e-17, 27.48% id in 342 aa; putative LPS biosynthesis related glycosyltransferase 2232881 wcgV 3287469 wcgV Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_211546.1 2231670 D 272559 CDS YP_211547.1 60681403 3287578 2232904..2233911 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative dehydratase WcgW SWALL:Q9F749 (EMBL:AF285774) (335 aa) fasta scores: E(): 3.1e-134, 100% id in 335 aa, and similar to Vibrio cholerae UDP-glucose 4-epimerase GalE or WbfT SWALL:GALE_VIBCH (SWALL:Q56623) (328 aa) fasta scores: E(): 2e-06, 31.67% id in 341 aa; putative LPS biosynthesis related dehydratase 2233911 wcgW 3287578 wcgW Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related dehydratase YP_211547.1 2232904 D 272559 CDS YP_211548.1 60681404 3287465 2233915..2234865 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis putative UndPP-QuiNAc-P-transferase WcgX SWALL:Q9F748 (EMBL:AF285774) (316 aa) fasta scores: E(): 8.7e-127, 100% id in 316 aa, and similar to Bacteroides thetaiotaomicron putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase BT0396 SWALL:AAO75503 (EMBL:AE016927) (329 aa) fasta scores: E(): 2.3e-65, 53.6% id in 319 aa; putative LPS biosynthesis related UndPP-QuiNAc-P-transferase 2234865 wcgX 3287465 wcgX Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related UndPP-QuiNAc-P-transferase YP_211548.1 2233915 D 272559 CDS YP_211549.1 60681405 3285675 complement(2235026..2235217) 1 NC_003228.3 no significant database matches; hypothetical protein 2235217 3285675 BF9343_1832 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211549.1 2235026 R 272559 CDS YP_211550.1 60681406 3285673 2235856..2236329 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis hypothetical 17.0 kDa protein ORF8 SWALL:Q9F747 (EMBL:AF285774) (157 aa) fasta scores: E(): 6.7e-59, 100% id in 157 aa, and similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative non-specific DNA-binding protein BT2021 SWALL:AAO77128 (EMBL:AE016934) (175 aa) fasta scores: E(): 6.3e-28, 57.41% id in 155 aa, and to Bacteroides thetaiotaomicron putative non-specific DNA-binding protein BT2929 SWALL:AAO78035 (EMBL:AE016938) (172 aa) fasta scores: E(): 3.2e-13, 39.49% id in 157 aa; hypothetical protein 2236329 3285673 BF9343_1834 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211550.1 2235856 D 272559 CDS YP_211551.1 60681407 3285674 complement(2236520..2237698) 1 NC_003228.3 Similar to Ambystoma tigrinum glutamate transporter 5B Seaat5B SWALL:O57325 (EMBL:AF018260) (544 aa) fasta scores: E(): 5.3e-14, 30.82% id in 266 aa, and to Bacteroides thetaiotaomicron Na+/H+-dicarboxylate symporter BT1223 SWALL:AAO76330 (EMBL:AE016931) (389 aa) fasta scores: E(): 6.6e-130, 90.9% id in 385 aa, and to Clostridium tetani serine/threonine sodium symporter CTC01514 SWALL:AAO36067 (EMBL:AE015941) (389 aa) fasta scores: E(): 7.3e-76, 51.81% id in 386 aa; putative transmembrane symporter 2237698 3285674 BF9343_1835 Bacteroides fragilis NCTC 9343 putative transmembrane symporter YP_211551.1 2236520 R 272559 CDS YP_211552.1 60681408 3286855 2237831..2239306 1 NC_003228.3 Similar to Actinobacillus actinomycetemcomitans 6-phosphogluconate dehydrogenase, decarboxylating gnd SWALL:6PGD_ACTAC (SWALL:P70718) (484 aa) fasta scores: E(): 2.6e-97, 51.44% id in 486 aa, and to Bacteroides thetaiotaomicron 6-phosphogluconate dehydrogenase,decarboxylating BT1222 SWALL:AAO76329 (EMBL:AE016931) (491 aa) fasta scores: E(): 1.5e-177, 89.4% id in 491 aa, and to Treponema pallidum 6-phosphogluconate dehydrogenase, decarboxylating Gnd or tp0331 SWALL:6PGD_TREPA (SWALL:O83351) (488 aa) fasta scores: E(): 1.9e-106, 55.71% id in 490 aa; 6-phosphogluconate dehydrogenase, decarboxylating 2239306 gnd 3286855 gnd Bacteroides fragilis NCTC 9343 6-phosphogluconate dehydrogenase, decarboxylating YP_211552.1 2237831 D 272559 CDS YP_211553.1 60681409 3287361 2239321..2240817 1 NC_003228.3 Similar to Rhizobium meliloti glucose-6-phosphate 1-dehydrogenase Zwf or r00704 or SMC03070 SWALL:G6PD_RHIME (SWALL:Q9Z3S2) (491 aa) fasta scores: E(): 1.2e-82, 43.41% id in 486 aa, and to Bacteroides thetaiotaomicron glucose-6-phosphate 1-dehydrogenase BT1221 SWALL:AAO76328 (EMBL:AE016931) (498 aa) fasta scores: E(): 2.3e-181, 84.13% id in 498 aa, and to Vibrio cholerae glucose-6-phosphate 1-dehydrogenase vca0896 SWALL:Q9KL52 (EMBL:AE004417) (501 aa) fasta scores: E(): 2.6e-111, 54.67% id in 503 aa; putative glucose-6-phosphate 1-dehydrogenase 2240817 zwf 3287361 zwf Bacteroides fragilis NCTC 9343 putative glucose-6-phosphate 1-dehydrogenase YP_211553.1 2239321 D 272559 CDS YP_211554.1 60681410 3287827 2240814..2241530 1 NC_003228.3 Similar to Treponema pallidum 6-phosphogluconolactonase Pgl or DevB or tp0477 SWALL:6PGL_TREPA (SWALL:O83490) (241 aa) fasta scores: E(): 7.1e-28, 40.8% id in 223 aa, and to Bacteroides thetaiotaomicron 6-phosphogluconolactonase BT1220 SWALL:AAO76327 (EMBL:AE016931) (229 aa) fasta scores: E(): 2.7e-69, 73.89% id in 226 aa, and to Vibrio parahaemolyticus DevB protein vp1709 SWALL:BAC59972 (EMBL:AP005079) (238 aa) fasta scores: E(): 8.1e-29, 40.69% id in 231 aa; putative 6-phosphogluconolactonase 2241530 pgl 3287827 pgl Bacteroides fragilis NCTC 9343 putative 6-phosphogluconolactonase YP_211554.1 2240814 D 272559 CDS YP_211555.1 60681411 3285685 2241866..2242111 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0819 SWALL:AAO75926 (EMBL:AE016929) (82 aa) fasta scores: E(): 0.003, 34.21% id in 76 aa; hypothetical protein 2242111 3285685 BF9343_1839 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211555.1 2241866 D 272559 CDS YP_211556.1 60681412 3285686 2242357..2242671 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0779 SWALL:AAO75886 (EMBL:AE016929) (107 aa) fasta scores: E(): 4.9e-10, 46.53% id in 101 aa; hypothetical protein 2242671 3285686 BF9343_1840 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211556.1 2242357 D 272559 CDS YP_211557.1 60681413 3285684 2242954..2245020 1 NC_003228.3 no significant database matches; hypothetical protein 2245020 3285684 BF9343_1841 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211557.1 2242954 D 272559 CDS YP_211558.1 60681414 3285683 2245181..2246032 1 NC_003228.3 Similar to Actinobacillus pleuropneumoniae urea transport protein Utp SWALL:Q9S408 (EMBL:AF167577) (300 aa) fasta scores: E(): 1.8e-16, 27.73% id in 274 aa, and to Anopheles gambiae str. PEST ebip2209 SWALL:EAA03460 (EMBL:AAAB01008671) (281 aa) fasta scores: E(): 1.4e-23, 33.94% id in 274 aa; putative urea transport protein 2246032 3285683 BF9343_1842 Bacteroides fragilis NCTC 9343 putative urea transport protein YP_211558.1 2245181 D 272559 CDS YP_211559.1 60681415 3285682 2246404..2247651 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3066 SWALL:AAO78172 (EMBL:AE016938) (702 aa) fasta scores: E(): 2.3e-19, 27.79% id in 367 aa, and to C-terminus of Bacteroides thetaiotaomicron hypothetical protein BT3741 SWALL:AAO78846 (EMBL:AE016942) (602 aa) fasta scores: E(): 1.7e-10, 24.59% id in 309 aa; hypothetical protein 2247651 3285682 BF9343_1843 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211559.1 2246404 D 272559 CDS YP_211560.1 60681416 3285692 2247839..2248552 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT0931 SWALL:Q8A986 (EMBL:AE016929) (214 aa) fasta scores: E(): 5.8, 24.88% id in 209 aa; hypothetical protein 2248552 3285692 BF9343_1844 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211560.1 2247839 D 272559 CDS YP_211561.1 60681417 3285679 complement(2248666..2249949) 1 NC_003228.3 Similar to Escherichia coli DNA repair protein RumB(r391) SWALL:Q44054 (EMBL:U13633) (422 aa) fasta scores: E(): 9e-65, 45.43% id in 416 aa, and to Providencia rettgeri RumB SWALL:Q8RL27 (EMBL:AY090559) (435 aa) fasta scores: E(): 9.3e-65, 45.43% id in 416 aa, and to Salmonella typhimurium ImpB protein SWALL:BAB91614 (EMBL:AP005147) (424 aa) fasta scores: E(): 4.8e-60, 43.09% id in 413 aa; putative RumB/ImpB like DNA repair protein 2249949 3285679 BF9343_1845 Bacteroides fragilis NCTC 9343 putative RumB/ImpB like DNA repair protein YP_211561.1 2248666 R 272559 CDS YP_211562.1 60681418 3285690 complement(2249949..2250386) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA repair protein UmuD protein or B1183 or Z1946 or ECS1678 or SF1172 or s1260 SWALL:UMUD_ECOLI (SWALL:P04153) (139 aa) fasta scores: E(): 5.7e-18, 40.87% id in 137 aa, and to Escherichia coli, and Providencia rettgeri RumA(r391) or RumA SWALL:Q44053 (EMBL:U13633) (149 aa) fasta scores: E(): 8.2e-18, 47.69% id in 130 aa, and to Vibrio cholerae RumA SWALL:Q8VVM6 (EMBL:AY034138) (149 aa) fasta scores: E(): 9.5e-18, 47.69% id in 130 aa; putative UmuD/RumA DNA repair protein 2250386 3285690 BF9343_1846 Bacteroides fragilis NCTC 9343 putative UmuD/RumA DNA repair protein YP_211562.1 2249949 R 272559 CDS YP_211563.1 60681419 3285691 2250616..2251764 1 NC_003228.3 no significant database matches; hypothetical protein 2251764 3285691 BF9343_1847 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211563.1 2250616 D 272559 CDS YP_211564.1 60681420 3285688 complement(2251993..2252691) 1 NC_003228.3 Similar to Clostridium perfringens response regulator VirR SWALL:Q46215 (EMBL:U04966) (252 aa) fasta scores: E(): 1.7e-10, 29.31% id in 191 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT1217 SWALL:AAO76324 (EMBL:AE016931) (232 aa) fasta scores: E(): 3e-78, 90.51% id in 232 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT1319 SWALL:AAO76426 (EMBL:AE016931) (228 aa) fasta scores: E(): 7.9e-28, 38.49% id in 226 aa; putative two-component system response regulator 2252691 3285688 BF9343_1848 Bacteroides fragilis NCTC 9343 putative two-component system response regulator YP_211564.1 2251993 R 272559 CDS YP_211565.1 60681421 3285689 complement(2252694..2253746) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative two-component system sensor protein, without kinase domain BT1216 SWALL:AAO76323 (EMBL:AE016931) (357 aa) fasta scores: E(): 2.3e-105, 76.21% id in 349 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor protein, no kinase domain BT1795 SWALL:AAO76902 (EMBL:AE016933) (401 aa) fasta scores: E(): 3.5e-26, 30.4% id in 375 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT1458 SWALL:AAO76565 (EMBL:AE016931) (368 aa) fasta scores: E(): 3.4e-22, 31.37% id in 290 aa; putative transmembrane protein 2253746 3285689 BF9343_1849 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211565.1 2252694 R 272559 CDS YP_211566.1 60681422 3285687 complement(2253879..2255099) 1 NC_003228.3 Similar to C-terminus of Escherichia coli macrolide-specific ABC-type efflux carrier MacB or B0879 SWALL:MACB_ECOLI (SWALL:P75831) (648 aa) fasta scores: E(): 1.5e-33, 36.76% id in 408 aa, and to entire Bacteroides thetaiotaomicron ABC transporter, permease protein BT1215 SWALL:AAO76322 (EMBL:AE016931) (406 aa) fasta scores: E(): 2.7e-138, 90.64% id in 406 aa, and to C-terminus of Chlorobium tepidum ABC transporter, ATP-binding protein CT0378 SWALL:Q8KFE9 (EMBL:AE012815) (651 aa) fasta scores: E(): 7.5e-59, 43.57% id in 397 aa; putative permease component of ABC transporter 2255099 3285687 BF9343_1850 Bacteroides fragilis NCTC 9343 putative permease component of ABC transporter YP_211566.1 2253879 R 272559 CDS YP_211567.1 60681423 3285698 complement(2255113..2255856) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter ATP-binding protein BT1214 SWALL:AAO76321 (EMBL:AE016931) (247 aa) fasta scores: E(): 2.4e-80, 91.83% id in 245 aa, and to Vibrio parahaemolyticus ABC transporter, ATP-binding protein vp1995 SWALL:BAC60258 (EMBL:AP005079) (239 aa) fasta scores: E(): 3.8e-45, 57.77% id in 225 aa, and to Thermotoga maritima hypothetical ABC transporter ATP-binding protein Tm0352 SWALL:Y352_THEMA (SWALL:Q9WYI7) (234 aa) fasta scores: E(): 1.2e-44, 58.55% id in 222 aa; putative ABC transporter ATP-binding component 2255856 3285698 BF9343_1851 Bacteroides fragilis NCTC 9343 putative ABC transporter ATP-binding component YP_211567.1 2255113 R 272559 CDS YP_211568.1 60681424 3285699 complement(2255859..2257082) 1 NC_003228.3 Similar to Rhizobium meliloti nodulation protein NolF or RA0481 or SMA0876 SWALL:NOLF_RHIME (SWALL:P25196) (367 aa) fasta scores: E(): 5.7e-11, 26.02% id in 365 aa, and to Bacteroides thetaiotaomicron periplasmic component of efflux system BT1213 SWALL:AAO76320 (EMBL:AE016931) (409 aa) fasta scores: E(): 5.1e-120, 82.75% id in 406 aa, and to Agrobacterium tumefaciens HlyD family secretion protein atu1815 or agr_c_3332 SWALL:Q8UEE5 (EMBL:AE009136) (437 aa) fasta scores: E(): 7.8e-22, 32.26% id in 406 aa; putative HlyD family secretion protein 2257082 3285699 BF9343_1852 Bacteroides fragilis NCTC 9343 putative HlyD family secretion protein YP_211568.1 2255859 R 272559 CDS YP_211569.1 60681425 3285696 complement(2257119..2258522) 1 NC_003228.3 Similar to Pseudomonas aeruginosa probable outer membrane lipoprotein precursor pa2525 or opmB SWALL:BAC24096 (EMBL:AE004680) (498 aa) fasta scores: E(): 3.5e-12, 25.22% id in 448 aa, and to Bacteroides thetaiotaomicron outer membrane efflux protein BT1212 SWALL:AAO76319 (EMBL:AE016931) (463 aa) fasta scores: E(): 3.1e-130, 80.08% id in 467 aa, and to Bacteroides thetaiotaomicron putative outer membrane efflux protein BT2498 SWALL:AAO77605 (EMBL:AE016936) (445 aa) fasta scores: E(): 1.1e-33, 31.8% id in 437 aa; putative outer membrane lipoprotein precursor 2258522 3285696 BF9343_1853 Bacteroides fragilis NCTC 9343 putative outer membrane lipoprotein precursor YP_211569.1 2257119 R 272559 CDS YP_211570.1 60681426 3287141 2259223..2260776 1 NC_003228.3 Similar to Azotobacter vinelandii cytochrome D ubiquinol oxidase subunit I CydA SWALL:CYDA_AZOVI (SWALL:Q09049) (537 aa) fasta scores: E(): 8.6e-81, 43.41% id in 516 aa, and to Bacteroides thetaiotaomicron cytochrome D ubiquinol oxidase subunit I BT1210 SWALL:AAO76317 (EMBL:AE016931) (520 aa) fasta scores: E(): 4.9e-182, 87.52% id in 513 aa, and to Campylobacter jejuni cytochrome bd oxidase subunit I CydA or CJ0081 SWALL:Q9PJ43 (EMBL:AL139074) (520 aa) fasta scores: E(): 1.2e-113, 56.41% id in 507 aa; putative cytochrome d ubiquinol oxidase subunit I 2260776 cydA 3287141 cydA Bacteroides fragilis NCTC 9343 putative cytochrome d ubiquinol oxidase subunit I YP_211570.1 2259223 D 272559 CDS YP_211571.1 60681427 3289407 2260802..2261950 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome d ubiquinol oxidase subunit II CydB or Cyd-2 or B0734 or C0812 or z0901 or ECS0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 8.1e-22, 26.41% id in 390 aa, and to Bacteroides thetaiotaomicron cytochrome d ubiquinol oxidase subunit II BT1209 SWALL:AAO76316 (EMBL:AE016930) (380 aa) fasta scores: E(): 4e-138, 90.23% id in 379 aa, and to Campylobacter jejuni cytochrome bd oxidase subunit II CydB or CJ0082 SWALL:Q9PJ42 (EMBL:AL139074) (374 aa) fasta scores: E(): 4.6e-50, 50.79% id in 376 aa; putative cytochrome d ubiquinol oxidase subunit II 2261950 cydB 3289407 cydB Bacteroides fragilis NCTC 9343 putative cytochrome d ubiquinol oxidase subunit II YP_211571.1 2260802 D 272559 CDS YP_211572.1 60681428 3285697 2262074..2263138 1 NC_003228.3 First 66 codons are similar to Escherichia coli molybdate metabolism regulator MolR or B2115/b2116/b2117 SWALL:MOLR_ECOLI (SWALL:P33345) (1264 aa) fasta scores: E(): 7e-06, 53.84% id in 65 aa, and from codon 76 similar to Salmonella typhi hypothetical protein STY3863 STY3863 or t3606 SWALL:Q8Z2S9 (EMBL:AL627279) (282 aa) fasta scores: E(): 2.3e-38, 43.21% id in 280 aa, and from codon 76 similar to Salmonella typhimurium putative cytoplasmic protein STM4015 SWALL:Q8ZKU0 (EMBL:AE008887) (282 aa) fasta scores: E(): 4.5e-38, 43.21% id in 280 aa; hypothetical protein 2263138 3285697 BF9343_1856 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211572.1 2262074 D 272559 CDS YP_211573.1 60681429 3285695 2263143..2264153 1 NC_003228.3 Similar to Salmonella typhimurium putative periplasmic protein STM4014 SWALL:Q8ZKU1 (EMBL:AE008887) (341 aa) fasta scores: E(): 3.7e-35, 37.77% id in 323 aa, and to Salmonella typhi hypothetical protein STY3865 STY3865 or t3608 SWALL:Q8Z2S7 (EMBL:AL627279) (202 aa) fasta scores: E(): 1.2e-21, 39.79% id in 191 aa, and to Salmonella typhi hypothetical protein STY3865 STY3865 or t3608 SWALL:AAO71110 (EMBL:AL627279) (202 aa) fasta scores: E(): 1.2e-21, 39.79% id in 191 aa; hypothetical protein 2264153 3285695 BF9343_1857 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211573.1 2263143 D 272559 CDS YP_211574.1 60681430 3285694 2264140..2264991 1 NC_003228.3 Similar to Salmonella typhimurium putative membrane-associated, metal-dependent hydrolase STM4013 SWALL:Q8ZKU2 (EMBL:AE008887) (291 aa) fasta scores: E(): 3.1e-51, 45.45% id in 286 aa, and to Salmonella typhi hypothetical protein STY3866 or t3609 SWALL:AAO71111 (EMBL:AL627279) (291 aa) fasta scores: E(): 9.3e-51, 45.1% id in 286 aa, and to Salmonella typhi hypothetical protein STY3866 or t3609 SWALL:Q8Z2S6 (EMBL:AL627279) (291 aa) fasta scores: E(): 9.3e-51, 45.1% id in 286 aa; hypothetical protein 2264991 3285694 BF9343_1858 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211574.1 2264140 D 272559 CDS YP_211575.1 60681431 3285705 2265027..2266268 1 NC_003228.3 Similar to Bacillus subtilis probable oxygen-independent coproporphyrinogen III oxidase HemN or BSU25500 SWALL:HEMN_BACSU (SWALL:P54304) (366 aa) fasta scores: E(): 2.3e-16, 26.38% id in 379 aa, and to Salmonella typhimurium putative coproporphyrinogen III oxidase and related FeS oxidoreductases STM4012 SWALL:Q8ZKU3 (EMBL:AE008887) (413 aa) fasta scores: E(): 1.9e-54, 42.01% id in 407 aa, and to Clostridium tetani putative oxygen-independent coproporphyrogen III oxidase CTC02538 SWALL:Q890U7 (EMBL:AE015944) (439 aa) fasta scores: E(): 3e-52, 36.58% id in 421 aa; putative oxygen-independent coproporphyrinogen III oxidase 2266268 3285705 BF9343_1859 Bacteroides fragilis NCTC 9343 putative oxygen-independent coproporphyrinogen III oxidase YP_211575.1 2265027 D 272559 CDS YP_211576.1 60681432 3285693 2266291..2267793 1 NC_003228.3 Similar to Salmonella typhimurium putative inner membrane protein STM4011 SWALL:Q8ZKU4 (EMBL:AE008887) (292 aa) fasta scores: E(): 3e-33, 36.14% id in 285 aa, and to Salmonella typhi hypothetical protein STY3869 or t3611 SWALL:AAO71112 (EMBL:AL627279) (292 aa) fasta scores: E(): 1.5e-32, 35.78% id in 285 aa, and to Salmonella typhi hypothetical protein STY3869 or t3611 SWALL:Q8Z2S5 (EMBL:AL627279) (292 aa) fasta scores: E(): 1.5e-32, 35.78% id in 285 aa; hypothetical protein 2267793 3285693 BF9343_1860 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211576.1 2266291 D 272559 CDS YP_211577.1 60681433 3285704 complement(2267796..2268752) 1 NC_003228.3 Similar to Methylobacterium extorquens glycerate dehydrogenase HprA SWALL:DHGY_METEX (SWALL:Q59516) (313 aa) fasta scores: E(): 4.1e-39, 38.99% id in 318 aa, and to Bacteroides thetaiotaomicron glycerate dehydrogenase BT1207 SWALL:AAO76314 (EMBL:AE016930) (318 aa) fasta scores: E(): 9e-97, 73.89% id in 318 aa, and to Clostridium acetobutylicum possible phosphoglycerate dehydrogenase CAC2945 SWALL:Q97F10 (EMBL:AE007791) (324 aa) fasta scores: E(): 1.2e-61, 50.61% id in 324 aa; putative glycerate dehydrogenase 2268752 3285704 BF9343_1861 Bacteroides fragilis NCTC 9343 putative glycerate dehydrogenase YP_211577.1 2267796 R 272559 CDS YP_211578.1 60681434 3285706 complement(2268836..2270107) 1 NC_003228.3 Similar to Streptomyces coelicolor conserved ATP/GTP binding protein sco1506 or sc9c5.30C SWALL:Q9KXP4 (EMBL:AL939109) (451 aa) fasta scores: E(): 2.3e-58, 47.4% id in 424 aa, and to Bacteroides thetaiotaomicron putative ATPase, AAA family BT1205 SWALL:AAO76312 (EMBL:AE016930) (422 aa) fasta scores: E(): 8.9e-136, 94.25% id in 418 aa, and to Chlorobium tepidum ATPase, AAA family CT0757 SWALL:Q8KED2 (EMBL:AE012845) (451 aa) fasta scores: E(): 3.5e-68, 49.64% id in 419 aa; putative AAA family ATPase protein 2270107 3285706 BF9343_1862 Bacteroides fragilis NCTC 9343 putative AAA family ATPase protein YP_211578.1 2268836 R 272559 CDS YP_211579.1 60681435 3285702 complement(2270131..2272725) 1 NC_003228.3 Similar to Thermoanaerobacter ethanolicus beta-galactosidase LacZ or LacA SWALL:BGAL_THEET (SWALL:P77989) (743 aa) fasta scores: E(): 1.2e-34, 32.75% id in 577 aa, and to Clostridium perfringens beta-galactosidase CPE1266 SWALL:Q8XKX6 (EMBL:AP003189) (1355 aa) fasta scores: E(): 9.5e-45, 30.59% id in 657 aa, and to Bifidobacterium bifidum beta-galactosidase SWALL:Q9F4D5 (EMBL:AJ224435) (1752 aa) fasta scores: E(): 2.1e-39, 28.96% id in 611 aa; putative beta-galactosidase 2272725 3285702 BF9343_1863 Bacteroides fragilis NCTC 9343 putative beta-galactosidase YP_211579.1 2270131 R 272559 CDS YP_211580.1 60681436 3285703 complement(2272761..2275328) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative outer membrane protein BT1204 SWALL:AAO76311 (EMBL:AE016930) (858 aa) fasta scores: E(): 0, 75.4% id in 858 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1527 SWALL:AAO76634 (EMBL:AE016932) (850 aa) fasta scores: E(): 4.2e-129, 42.42% id in 851 aa; hypothetical protein 2275328 3285703 BF9343_1864 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211580.1 2272761 R 272559 CDS YP_211581.1 60681437 3285700 complement(2275436..2276551) 1 NC_003228.3 Similar to Pseudomonas aeruginosa lipopolysaccharide biosynthesis loci WbpI SWALL:P72142 (EMBL:U50396) (362 aa) fasta scores: E(): 1.5e-28, 32.81% id in 323 aa, and to Bacteroides thetaiotaomicron putative UDP-N-acetylglucosamine 2-epimerase BT1203 SWALL:Q8A8G4 (EMBL:AE016930) (209 aa) fasta scores: E(): 1.7e-64, 81.55% id in 206 aa, and to Nitrosomonas europaea UDP-N-acetylglucosamine 2-epimerase WbpI or NE2249 SWALL:Q82SQ8 (EMBL:BX321864) (369 aa) fasta scores: E(): 3e-46, 38.42% id in 367 aa; putative UDP-N-acetylglucosamine 2-epimerase 2276551 3285700 BF9343_1865 Bacteroides fragilis NCTC 9343 putative UDP-N-acetylglucosamine 2-epimerase YP_211581.1 2275436 R 272559 CDS YP_211582.1 60681438 3285701 2276606..2277232 1 NC_003228.3 Similar to Aeromonas punctata hypothetical 22.7 kDa protein YadS SWALL:YADS_AERPU (SWALL:Q9R9S0) (210 aa) fasta scores: E(): 5.8e-26, 39.3% id in 201 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1201 SWALL:AAO76308 (EMBL:AE016930) (209 aa) fasta scores: E(): 5.5e-61, 76.11% id in 201 aa; putative transmembrane protein 2277232 3285701 BF9343_1866 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211582.1 2276606 D 272559 CDS YP_211583.1 60681439 3285711 complement(2277246..2277740) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1200 SWALL:AAO76307 (EMBL:AE016930) (164 aa) fasta scores: E(): 5.8e-34, 58.02% id in 162 aa; hypothetical protein 2277740 3285711 BF9343_1867 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211583.1 2277246 R 272559 CDS YP_211584.1 60681440 3285712 complement(2277765..2278010) 1 NC_003228.3 no significant database matches; hypothetical protein 2278010 3285712 BF9343_1868 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211584.1 2277765 R 272559 CDS YP_211585.1 60681441 3287886 complement(2278024..2278992) 1 NC_003228.3 Similar to Streptococcus gordonii Challis probable protease HtpX homolog SWALL:HTPX_STRGC (SWALL:O30795) (297 aa) fasta scores: E(): 1.1e-29, 34.31% id in 271 aa, and to Bacteroides thetaiotaomicron putative protease BT1199 SWALL:AAO76306 (EMBL:AE016930) (320 aa) fasta scores: E(): 6.9e-91, 73.91% id in 322 aa, and to Listeria innocua probable protease HtpX homolog HtpX or LIN0962 SWALL:HTPX_LISIN (SWALL:Q92D58) (304 aa) fasta scores: E(): 2.7e-30, 39.84% id in 256 aa; putative transmembrane protease HtpX homolog 2278992 htpX 3287886 htpX Bacteroides fragilis NCTC 9343 putative transmembrane protease HtpX homolog YP_211585.1 2278024 R 272559 CDS YP_211586.1 60681442 3285709 complement(2279014..2279574) 1 NC_003228.3 Similar to Listeria monocytogenes LemA SWALL:P71452 (EMBL:U66186) (185 aa) fasta scores: E(): 2.7e-23, 45.4% id in 185 aa, and to Bacteroides thetaiotaomicron LemA protein BT1198 SWALL:AAO76305 (EMBL:AE016930) (186 aa) fasta scores: E(): 4.3e-55, 87.09% id in 186 aa, and to Bradyrhizobium japonicum BLL2494 protein SWALL:BAC47759 (EMBL:AP005944) (186 aa) fasta scores: E(): 8.5e-32, 57.14% id in 182 aa; putative LemA antigen-like protein 2279574 3285709 BF9343_1870 Bacteroides fragilis NCTC 9343 putative LemA antigen-like protein YP_211586.1 2279014 R 272559 CDS YP_211587.1 60681443 3285710 2279865..2280368 1 NC_003228.3 Similar to Pseudomonas syringae, Pseudomonas syringae HrpL SWALL:P96978 (EMBL:U52918) (184 aa) fasta scores: E(): 1.7e-08, 29.44% id in 163 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1197 SWALL:AAO76304 (EMBL:AE016930) (167 aa) fasta scores: E(): 1.4e-60, 95.8% id in 167 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3457 SWALL:AAO78563 (EMBL:AE016940) (167 aa) fasta scores: E(): 1.1e-57, 89.75% id in 166 aa; putative RNA polymerase ECF-type sigma factor 2280368 3285710 BF9343_1871 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_211587.1 2279865 D 272559 CDS YP_211588.1 60681444 3285707 2280617..2282392 1 NC_003228.3 Similar to Methanosarcina barkeri pyruvate carboxylase biotin-containing subunit PycB SWALL:Q9HH18 (EMBL:AF317651) (573 aa) fasta scores: E(): 2.5e-22, 31.92% id in 451 aa, and to Bacteroides thetaiotaomicron pyruvate carboxylase subunit B BT1196 SWALL:AAO76303 (EMBL:AE016930) (591 aa) fasta scores: E(): 3e-216, 92.21% id in 591 aa, and to Bacteroides thetaiotaomicron pyruvate carboxylase subunit B BT1697 SWALL:AAO76804 (EMBL:AE016932) (609 aa) fasta scores: E(): 4.4e-129, 59.02% id in 615 aa; putative pyruvate carboxylase biotin-containing subunit 2282392 3285707 BF9343_1872 Bacteroides fragilis NCTC 9343 putative pyruvate carboxylase biotin-containing subunit YP_211588.1 2280617 D 272559 CDS YP_211589.1 60681445 3285708 2283190..2286567 1 NC_003228.3 Identical to Bacteroides fragilis outer membrane protein omp121 SWALL:Q93TH9 (EMBL:AF357210) (1125 aa) fasta scores: E(): 0, 100% id in 1125 aa, and similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2560 SWALL:AAO77667 (EMBL:AE016936) (1100 aa) fasta scores: E(): 2.1e-46, 31.35% id in 1129 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2032 SWALL:AAO77139 (EMBL:AE016934) (955 aa) fasta scores: E(): 3.2e-46, 27.35% id in 1042 aa; putative outer membrane protein 2286567 3285708 BF9343_1873 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211589.1 2283190 D 272559 CDS YP_211590.1 60681446 3285720 2286589..2288478 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0318 SWALL:Q8AAZ4 (EMBL:AE016927) (404 aa) fasta scores: E(): 9.5e-12, 32.07% id in 265 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1047 SWALL:Q8A8X0 (EMBL:AE016930) (514 aa) fasta scores: E(): 1.2e-09, 23.49% id in 447 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2259 SWALL:Q8A5I0 (EMBL:AE016935) (488 aa) fasta scores: E(): 1.7e-09, 24.31% id in 329 aa; hypothetical protein 2288478 3285720 BF9343_1874 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211590.1 2286589 D 272559 CDS YP_211591.1 60681447 3289254 complement(2288582..2289328) 1 NC_003228.3 Similar to Escherichia coli monofunctional biosynthetic peptidoglycan transglycosylase MtgA or b3208 SWALL:MTGA_ECOLI (SWALL:P46022) (242 aa) fasta scores: E(): 4.9e-35, 44.05% id in 227 aa, and to Bacteroides thetaiotaomicron monofunctional biosynthetic peptidoglycan transglycosylase BT1195 SWALL:AAO76302 (EMBL:AE016930) (248 aa) fasta scores: E(): 6.9e-78, 79.09% id in 244 aa, and to Caulobacter crescentus monofunctional biosynthetic peptidoglycan transglycosylase CC0325 SWALL:Q9ABA6 (EMBL:AE005706) (229 aa) fasta scores: E(): 2e-40, 52.83% id in 212 aa; putative monofunctional biosynthetic peptidoglycan transglycosylase 2289328 mtgA 3289254 mtgA Bacteroides fragilis NCTC 9343 putative monofunctional biosynthetic peptidoglycan transglycosylase YP_211591.1 2288582 R 272559 CDS YP_211592.1 60681448 3285719 complement(2289452..2290126) 1 NC_003228.3 Similar to Pseudomonas alcaligenes OmpA SWALL:Q9XAX8 (EMBL:U88088) (220 aa) fasta scores: E(): 1e-09, 33.94% id in 218 aa, and to Bacteroides thetaiotaomicron outer membrane protein, OmpA family BT1194 SWALL:AAO76301 (EMBL:AE016930) (266 aa) fasta scores: E(): 2.6e-27, 57.87% id in 235 aa, and to Porphyromonas gingivalis immunogenic 23 kDa lipoprotein PG3 SWALL:Q9XCA4 (EMBL:AF145799) (223 aa) fasta scores: E(): 3.4e-22, 43.42% id in 228 aa; putative outer membrane protein OmpA-family 2290126 3285719 BF9343_1876 Bacteroides fragilis NCTC 9343 putative outer membrane protein OmpA-family YP_211592.1 2289452 R 272559 CDS YP_211593.1 60681449 3285717 complement(2290281..2291624) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1193 SWALL:AAO76300 (EMBL:AE016930) (451 aa) fasta scores: E(): 6e-163, 88.56% id in 446 aa, and to Clostridium perfringens hypothetical protein CPE1459 SWALL:Q8XKE1 (EMBL:AP003190) (463 aa) fasta scores: E(): 1.6e-64, 37.86% id in 441 aa, and to Clostridium perfringens hypothetical protein CPE0839 SWALL:Q8XM51 (EMBL:AP003188) (438 aa) fasta scores: E(): 9.8e-47, 33.02% id in 427 aa, and to Thermotoga maritima probable multidrug resistance protein NorM or TM0815 SWALL:NORM_THEMA (SWALL:Q9WZS2) (464 aa) fasta scores: E(): 4.5e-28, 26.38% id in 451 aa; putative MatE-family transmembrane protein 2291624 3285717 BF9343_1877 Bacteroides fragilis NCTC 9343 putative MatE-family transmembrane protein YP_211593.1 2290281 R 272559 CDS YP_211594.1 60681450 3285718 2291713..2292612 1 NC_003228.3 Similar to Escherichia coli probable amino acid metabolite efflux pump EamA or B1533 SWALL:EAMA_ECOLI (SWALL:P31125) (299 aa) fasta scores: E(): 2.4e-15, 26.51% id in 298 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3123 SWALL:AAO78229 (EMBL:AE016939) (291 aa) fasta scores: E(): 3.7e-68, 58.24% id in 285 aa, and to Bacillus subtilis hypothetical transport protein YbhF or BSU02210 SWALL:YBFH_BACSU (SWALL:O31448) (306 aa) fasta scores: E(): 9.1e-45, 41.98% id in 293 aa; putative transmembrane transporter 2292612 3285718 BF9343_1878 Bacteroides fragilis NCTC 9343 putative transmembrane transporter YP_211594.1 2291713 D 272559 CDS YP_211595.1 60681451 3285715 complement(2292631..2294190) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4645 SWALL:AAO79750 (EMBL:AE016946) (513 aa) fasta scores: E(): 1.8e-100, 49.8% id in 504 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4642 SWALL:AAO79747 (EMBL:AE016946) (418 aa) fasta scores: E(): 7.2e-30, 27.56% id in 399 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2560 SWALL:AAO77667 (EMBL:AE016936) (1100 aa) fasta scores: E(): 1.5e-05, 26.47% id in 204 aa; putative outer membrane protein 2294190 3285715 BF9343_1879 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211595.1 2292631 R 272559 CDS YP_211596.1 60681452 3285716 complement(2294215..2295063) 1 NC_003228.3 Similar to Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 5e-06, 22.59% id in 270 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT4644 SWALL:AAO79749 (EMBL:AE016946) (280 aa) fasta scores: E(): 2.8e-40, 42.75% id in 283 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT4723 SWALL:AAO79828 (EMBL:AE016946) (325 aa) fasta scores: E(): 3.3e-09, 23.63% id in 292 aa; possible anti-sigma factor 2295063 3285716 BF9343_1880 Bacteroides fragilis NCTC 9343 possible anti-sigma factor YP_211596.1 2294215 R 272559 CDS YP_211597.1 60681453 3285713 complement(2295060..2295611) 1 NC_003228.3 Similar to Bacteroides fragilis RpoE sigma factor SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 5e-10, 29.54% id in 176 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4643 SWALL:AAO79748 (EMBL:AE016946) (183 aa) fasta scores: E(): 1.6e-44, 69.23% id in 182 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3277 SWALL:AAO78383 (EMBL:AE016939) (189 aa) fasta scores: E(): 3e-14, 35% id in 180 aa; putative RNA polymerase ECF-type sigma factor 2295611 3285713 BF9343_1881 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_211597.1 2295060 R 272559 CDS YP_211598.1 60681454 3285714 complement(2295664..2296926) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4642 SWALL:AAO79747 (EMBL:AE016946) (418 aa) fasta scores: E(): 8.3e-91, 56.69% id in 418 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4645 SWALL:AAO79750 (EMBL:AE016946) (513 aa) fasta scores: E(): 5.6e-30, 30.54% id in 383 aa; hypothetical protein 2296926 3285714 BF9343_1882 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211598.1 2295664 R 272559 CDS YP_211599.1 60681455 3285726 complement(2297065..2297607) 1 NC_003228.3 no significant database matches; hypothetical protein 2297607 3285726 BF9343_1883 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211599.1 2297065 R 272559 CDS YP_211600.1 60681456 3285725 2297848..2298123 1 NC_003228.3 Similar to Bacillus stearothermophilus, Bacillus caldolyticus, and Bacillus caldotenax DNA-binding protein Hu Hup or Hbs or HbsU SWALL:DBH_BACST (SWALL:P02346) (90 aa) fasta scores: E(): 3.2e-10, 44.18% id in 86 aa, and to Porphyromonas gingivalis W83 DNA-binding protein Hu Hup-1 or PG0121 SWALL:AAQ65364 (EMBL:AE017172) (88 aa) fasta scores: E(): 7.1e-10, 42.52% id in 87 aa, and to Oceanobacillus iheyensis non-specific DNA-binding protein ob1792 SWALL:Q8EQB2 (EMBL:AP004599) (90 aa) fasta scores: E(): 7.2e-10, 41.86% id in 86 aa; putative histone-like DNA-binding protein 2298123 3285725 BF9343_1884 Bacteroides fragilis NCTC 9343 putative histone-like DNA-binding protein YP_211600.1 2297848 D 272559 CDS YP_211601.1 60681457 3285724 2299601..2300182 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1728 SWALL:AAO76835 (EMBL:AE016933) (196 aa) fasta scores: E(): 2.1e-16, 35.26% id in 173 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4636 SWALL:AAO79741 (EMBL:AE016946) (197 aa) fasta scores: E(): 5.3e-14, 30.5% id in 200 aa, and to Bacteroides thetaiotaomicron ECF-type sigma factor BT0978 SWALL:AAO76085 (EMBL:AE016929) (163 aa) fasta scores: E(): 1.2e-12, 33.75% id in 157 aa; putative ECF-type RNA polymerase sigma factor 2300182 3285724 BF9343_1886 Bacteroides fragilis NCTC 9343 putative ECF-type RNA polymerase sigma factor YP_211601.1 2299601 D 272559 CDS YP_211602.1 60681458 3285722 2300179..2301057 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transmembrane sensor BT1727 SWALL:AAO76834 (EMBL:AE016933) (283 aa) fasta scores: E(): 1.4e-11, 27.11% id in 236 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2171 SWALL:AAO77278 (EMBL:AE016935) (290 aa) fasta scores: E(): 6.9e-09, 27.17% id in 276 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT3992 SWALL:AAO79097 (EMBL:AE016943) (309 aa) fasta scores: E(): 3.8e-08, 29.13% id in 230 aa; possible anti-sigma factor 2301057 3285722 BF9343_1887 Bacteroides fragilis NCTC 9343 possible anti-sigma factor YP_211602.1 2300179 D 272559 CDS YP_211603.1 60681459 3285723 2301054..2301326 1 NC_003228.3 no significant database matches; hypothetical protein 2301326 3285723 BF9343_1888 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211603.1 2301054 D 272559 CDS YP_211604.1 60681460 3285733 2301851..2302750 1 NC_003228.3 Limited similarity to Pseudomonas aeruginosa exoenzyme S synthesis regulatory protein ExsA or pa1713 SWALL:EXSA_PSEAE (SWALL:P26993) (278 aa) fasta scores: E(): 0.00036, 24.3% id in 251 aa, and to Bacteroides thetaiotaomicron transcription regulator BT2320 SWALL:Q8A5B9 (EMBL:AE016935) (291 aa) fasta scores: E(): 2e-31, 37.31% id in 276 aa, and to Bacteroides thetaiotaomicron AraC family transcriptional regulator BT2889 SWALL:Q8A3R5 (EMBL:AE016937) (294 aa) fasta scores: E(): 4e-25, 28.46% id in 274 aa; putative AraC family transcriptional regulator 2302750 3285733 BF9343_1889 Bacteroides fragilis NCTC 9343 putative AraC family transcriptional regulator YP_211604.1 2301851 D 272559 CDS YP_211605.1 60681461 3285721 2302793..2303371 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1066 SWALL:AAO76173 (EMBL:AE016930) (189 aa) fasta scores: E(): 1.8e-40, 51.05% id in 190 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2660 SWALL:AAO77767 (EMBL:AE016937) (196 aa) fasta scores: E(): 1.9e-40, 49.74% id in 193 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1451 SWALL:AAO76558 (EMBL:AE016931) (195 aa) fasta scores: E(): 4.8e-36, 53.4% id in 176 aa; hypothetical protein 2303371 3285721 BF9343_1890 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211605.1 2302793 D 272559 CDS YP_211606.1 60681462 3285732 2303392..2304576 1 NC_003228.3 C-terminus is similar to the N-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT1064 SWALL:Q8A8V3 (EMBL:AE016930) (392 aa) fasta scores: E(): 7e-14, 32.46% id in 268 aa, and entire protein is similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4233 SWALL:Q89ZY8 (EMBL:AE016944) (484 aa) fasta scores: E(): 1.4e-08, 24.49% id in 392 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1452 SWALL:Q8A7S2 (EMBL:AE016931) (484 aa) fasta scores: E(): 2.8e-08, 24.6% id in 382 aa; hypothetical protein 2304576 3285732 BF9343_1891 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211606.1 2303392 D 272559 CDS YP_211607.1 60681463 3285734 2304597..2305688 1 NC_003228.3 no significant database matches; hypothetical protein 2305688 3285734 BF9343_1892 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211607.1 2304597 D 272559 CDS YP_211608.1 60681464 3285730 2305762..2306718 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1062 SWALL:AAO76169 (EMBL:AE016930) (317 aa) fasta scores: E(): 3.6e-07, 25.38% id in 323 aa; hypothetical protein 2306718 3285730 BF9343_1893 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211608.1 2305762 D 272559 CDS YP_211609.1 60681465 3285731 2306747..2308984 1 NC_003228.3 Similar to first 450 codons of Porphyromonas gingivalis DNA for fimbrilin, ORF1-4 SWALL:O32388 (EMBL:D42067) (453 aa) fasta scores: E(): 0.036, 22.24% id in 472 aa; hypothetical protein 2308984 3285731 BF9343_1894 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211609.1 2306747 D 272559 CDS YP_211610.1 60681466 3285728 2309019..2312216 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1067 SWALL:AAO76174 (EMBL:AE016930) (608 aa) fasta scores: E(): 1.5e-16, 25.4% id in 551 aa; hypothetical protein 2312216 3285728 BF9343_1895 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211610.1 2309019 D 272559 CDS YP_211611.1 60681467 3285729 2312768..2314045 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative periplasmic protease BT0154 SWALL:AAO75261 (EMBL:AE016926) (484 aa) fasta scores: E(): 1.1e-27, 43.86% id in 440 aa, and to Bacteroides thetaiotaomicron carboxyl-terminal protease BT2239 SWALL:AAO77346 (EMBL:AE016935) (565 aa) fasta scores: E(): 1.7e-07, 27.1% id in 428 aa; hypothetical protein 2314045 3285729 BF9343_1896 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211611.1 2312768 D 272559 CDS YP_211612.1 60681468 3285740 2314597..2314836 1 NC_003228.3 no significant database matches; hypothetical protein 2314836 3285740 BF9343_1897 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211612.1 2314597 D 272559 CDS YP_211613.1 60681469 3286048 2315058..2315405 1 NC_003228.3 no significant database matches; hypothetical protein 2315405 3286048 BF9343_1898 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211613.1 2315058 D 272559 CDS YP_211614.1 60681470 3285739 2315402..2316394 1 NC_003228.3 Similar to Bradyrhizobium japonicum transcriptional regulatory protein BLL2512 SWALL:BAC47777 (EMBL:AP005944) (324 aa) fasta scores: E(): 7.9e-12, 23.31% id in 296 aa, and N-terminus is similar to Shewanella oneidensis transcriptional regulator, MarR family so0916 SWALL:Q8EIC7 (EMBL:AE015536) (309 aa) fasta scores: E(): 5.8e-20, 29.15% id in 295 aa, and C-terminus is similar to Vibrio parahaemolyticus putative acetyltransferase vp2648 SWALL:BAC60911 (EMBL:AP005082) (172 aa) fasta scores: E(): 7e-17, 40.11% id in 172 aa. It is possible that this CDS is a fusion protein of a transcriptional regulatory protein and an acetyltransferase protein.; putative MarR-family regulatory protein 2316394 3285739 BF9343_1899 Bacteroides fragilis NCTC 9343 putative MarR-family regulatory protein YP_211614.1 2315402 D 272559 CDS YP_211615.1 60681471 3285737 complement(2316497..2317885) 1 NC_003228.3 Similar to Porphyromonas gingivalis protoporphyrinogen oxidase HemG SWALL:Q8L152 (EMBL:AB074530) (465 aa) fasta scores: E(): 3e-79, 49.44% id in 451 aa, and to Myxococcus xanthus protoporphyrinogen oxidase HemY SWALL:PPOX_MYXXA (SWALL:P56601) (471 aa) fasta scores: E(): 1e-33, 29.23% id in 455 aa, and to Synechococcus elongatus protoporphyrinogen oxidase TLR0374 SWALL:Q8DLV2 (EMBL:AP005370) (467 aa) fasta scores: E(): 1.8e-26, 27.15% id in 464 aa; putative protoporphyrinogen oxidase 2317885 3285737 BF9343_1900 Bacteroides fragilis NCTC 9343 putative protoporphyrinogen oxidase YP_211615.1 2316497 R 272559 CDS YP_211616.1 60681472 3289214 complement(2317888..2319252) 1 NC_003228.3 Similar to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN or B3867 SWALL:HEMN_ECOLI (SWALL:P32131) (457 aa) fasta scores: E(): 5.5e-56, 40% id in 445 aa, and to Aquifex aeolicus oxygen-independent coproporphyrinogen II HemN or AQ_2124 SWALL:HEMN_AQUAE (SWALL:O67886) (456 aa) fasta scores: E(): 1.9e-60, 38.86% id in 440 aa, and to Campylobacter jejuni oxygen-independent coproporphyrinogen III oxidase HemN or CJ0992C SWALL:Q9PNU8 (EMBL:AL139076) (451 aa) fasta scores: E(): 5.7e-58, 36.9% id in 439 aa; putative oxygen-independent coproporphyrinogen III oxidase 2319252 hemN 3289214 hemN Bacteroides fragilis NCTC 9343 putative oxygen-independent coproporphyrinogen III oxidase YP_211616.1 2317888 R 272559 CDS YP_211617.1 60681473 3285738 complement(2319258..2320496) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 AmpG protein or B0433 or Z0536 or ECS0487 SWALL:AMPG_ECOLI (SWALL:P36670) (491 aa) fasta scores: E(): 2.4e-15, 22.25% id in 391 aa, and to Anabaena sp. hypothetical protein ALL4025 SWALL:Q8YQ15 (EMBL:AP003595) (396 aa) fasta scores: E(): 3.8e-37, 34.12% id in 381 aa, and to Rhizobium meliloti putative transport protein r00214 or SMC02889 SWALL:Q92SY4 (EMBL:AL591782) (421 aa) fasta scores: E(): 4.1e-23, 27.22% id in 382 aa; putative transmembrane transporter protein 2320496 3285738 BF9343_1902 Bacteroides fragilis NCTC 9343 putative transmembrane transporter protein YP_211617.1 2319258 R 272559 CDS YP_211618.1 60681474 3285736 complement(2320506..2322575) 1 NC_003228.3 Similar to Pseudomonas fluorescens quinolobactin receptor QbsI SWALL:AAL65282 (EMBL:AY072690) (669 aa) fasta scores: E(): 1.9e-17, 26.16% id in 642 aa, and to Yersinia pestis putative TonB-dependent outer membrane receptor YPO1011 SWALL:Q8ZH95 (EMBL:AJ414146) (690 aa) fasta scores: E(): 3.2e-49, 28.21% id in 677 aa, and to Yersinia pestis putative OM receptor Y3404 SWALL:Q8CZU1 (EMBL:AE013942) (690 aa) fasta scores: E(): 3.2e-49, 28.21% id in 677 aa; putative outer membrane protein 2322575 3285736 BF9343_1903 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211618.1 2320506 R 272559 CDS YP_211619.1 60681475 3285735 2323019..2325373 1 NC_003228.3 Similar to Streptococcus pyogenes SclB protein SWALL:Q9ACN0 (EMBL:AJ301813) (427 aa) fasta scores: E(): 9.5e-16, 38.37% id in 271 aa, and to Streptococcus pyogenes collagen-like protein b SWALL:Q9AGC4 (EMBL:AF336819) (465 aa) fasta scores: E(): 2e-14, 34.03% id in 285 aa; hypothetical protein 2325373 3285735 BF9343_1904 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211619.1 2323019 D 272559 CDS YP_211620.1 60681476 3285746 2325386..2326585 1 NC_003228.3 From codon 115 similar to Riemerella anatipestifer outer membrane protein A OmpA SWALL:Q9LAT2 (EMBL:AF104936) (387 aa) fasta scores: E(): 2.7e-11, 28.53% id in 368 aa, and to Riemerella anatipestifer outer membrane protein A OmpA SWALL:Q9LAT0 (EMBL:AF104937) (387 aa) fasta scores: E(): 3.1e-11, 27.98% id in 368 aa, and C-terminus is similar to C-terminus of Vibrio cholerae putative outer membrane porin OmpA or vc2213 SWALL:O31154 (EMBL:AF030977) (321 aa) fasta scores: E(): 4.9e-08, 28.57% id in 203 aa; putative outer membrane protein 2326585 3285746 BF9343_1905 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211620.1 2325386 D 272559 CDS YP_211621.1 60681477 3285747 2326885..2327751 1 NC_003228.3 Limited similarity to Yersinia enterocolitica virulence regulon transcriptional activator VirF SWALL:VIRF_YEREN (SWALL:P13225) (271 aa) fasta scores: E(): 0.00053, 20.86% id in 254 aa, and similar to Bacteroides thetaiotaomicron transcription regulator BT2320 SWALL:AAO77427 (EMBL:AE016935) (291 aa) fasta scores: E(): 1.8e-27, 34.04% id in 279 aa, and to Bacteroides thetaiotaomicron AraC family transcriptional regulator BT2889 SWALL:AAO77995 (EMBL:AE016937) (294 aa) fasta scores: E(): 1.3e-25, 32.11% id in 274 aa; putative AraC-family transcriptional regulator 2327751 3285747 BF9343_1906 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_211621.1 2326885 D 272559 CDS YP_211622.1 60681478 3285744 2328288..2328491 1 NC_003228.3 no significant database matches; hypothetical protein 2328491 3285744 BF9343_1907 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211622.1 2328288 D 272559 CDS YP_211623.1 60681479 3285745 2328564..2330795 1 NC_003228.3 Similar to Vibrio parahaemolyticus ferric vibrioferrin receptor PvuA SWALL:Q9AQK7 (EMBL:AB048250) (712 aa) fasta scores: E(): 6.5e-13, 23.02% id in 721 aa, and to Rhizobium meliloti putative outer membrane receptor protein r02383 or SMC02721 SWALL:Q92N47 (EMBL:AL591790) (932 aa) fasta scores: E(): 9.8e-74, 38.68% id in 623 aa, and to Caulobacter crescentus TonB-dependent receptor CC0139 SWALL:Q9ABT1 (EMBL:AE005688) (730 aa) fasta scores: E(): 6.1e-18, 25.64% id in 733 aa; putative TonB-dependent outer membrane receptor protein 2330795 3285745 BF9343_1908 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_211623.1 2328564 D 272559 CDS YP_211624.1 60681480 3285742 2330851..2334228 1 NC_003228.3 Similar to Bacteroides fragilis outer membrane protein Omp121 SWALL:Q93TH9 (EMBL:AF357210) (1125 aa) fasta scores: E(): 7.9e-26, 22.73% id in 1205 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3239 SWALL:AAO78345 (EMBL:AE016939) (1059 aa) fasta scores: E(): 1.2e-133, 41.97% id in 1072 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3240 SWALL:AAO78346 (EMBL:AE016939) (1058 aa) fasta scores: E(): 1.6e-128, 41% id in 1073 aa; putative outer membrane protein 2334228 3285742 BF9343_1909 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211624.1 2330851 D 272559 CDS YP_211625.1 60681481 3285743 2334215..2335744 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3241 SWALL:AAO78347 (EMBL:AE016939) (517 aa) fasta scores: E(): 1.9e-46, 34.98% id in 526 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3238 SWALL:AAO78344 (EMBL:AE016939) (519 aa) fasta scores: E(): 1.9e-34, 31.75% id in 529 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3280 SWALL:AAO78386 (EMBL:AE016939) (489 aa) fasta scores: E(): 3.3e-07, 24.69% id in 486 aa; hypothetical protein 2335744 3285743 BF9343_1910 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211625.1 2334215 D 272559 CDS YP_211626.1 60681482 3285612 2335783..2336787 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3242 SWALL:AAO78348 (EMBL:AE016939) (304 aa) fasta scores: E(): 6.7e-10, 25.1% id in 247 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3237 SWALL:AAO78343 (EMBL:AE016939) (292 aa) fasta scores: E(): 4.9e-07, 22.9% id in 275 aa; hypothetical protein 2336787 3285612 BF9343_1911 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211626.1 2335783 D 272559 CDS YP_211627.1 60681483 3285741 2336794..2337825 1 NC_003228.3 no significant database matches; hypothetical protein 2337825 3285741 BF9343_1912 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211627.1 2336794 D 272559 CDS YP_211628.1 60681484 3285613 2337848..2338486 1 NC_003228.3 no significant database matches; hypothetical protein 2338486 3285613 BF9343_1913 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211628.1 2337848 D 272559 CDS YP_211629.1 60681485 3285610 2338504..2339691 1 NC_003228.3 no significant database matches; hypothetical protein 2339691 3285610 BF9343_1914 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211629.1 2338504 D 272559 CDS YP_211630.1 60681486 3285611 2339695..2340798 1 NC_003228.3 Limited similarity to Thermotoga sp. strain FjSS3-B.1 family 10 xylanase XynB SWALL:Q9R6T4 (EMBL:AF126689) (1055 aa) fasta scores: E(): 0.07, 21.97% id in 273 aa; hypothetical protein 2340798 3285611 BF9343_1915 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211630.1 2339695 D 272559 CDS YP_211631.1 60681487 3285750 2340826..2341746 1 NC_003228.3 Very low similarity to Bacteroides thetaiotaomicron conserved hypothetical protein BT3027 SWALL:AAO78133 (EMBL:AE016938) (395 aa) fasta scores: E(): 9.8, 22.22% id in 189 aa; hypothetical protein 2341746 3285750 BF9343_1916 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211631.1 2340826 D 272559 CDS YP_211632.1 60681488 3285669 2341802..2343985 1 NC_003228.3 Similar to Vibrio cholerae DNA for Otn region genes OtnA SWALL:Q56658 (EMBL:X90547) (911 aa) fasta scores: E(): 3.2e-29, 25.41% id in 779 aa, and to Bacteroides thetaiotaomicron polysialic acid transport protein KpsD precursor BT1723 SWALL:Q8A702 (EMBL:AE016933) (789 aa) fasta scores: E(): 4.4e-141, 53.41% id in 702 aa, and to Bacteroides thetaiotaomicron putative capsule polysaccharide export protein BT1356 SWALL:Q8A818 (EMBL:AE016931) (789 aa) fasta scores: E(): 1e-140, 53.13% id in 702 aa; putative polysialic acid capsule transport protein 2343985 3285669 BF9343_1917 Bacteroides fragilis NCTC 9343 putative polysialic acid capsule transport protein YP_211632.1 2341802 D 272559 CDS YP_211633.1 60681489 3285749 complement(2344189..2344557) 1 NC_003228.3 no significant database matches; hypothetical protein 2344557 3285749 BF9343_1918 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211633.1 2344189 R 272559 CDS YP_211634.1 60681490 3285619 complement(2344598..2346970) 1 NC_003228.3 no significant database matches; hypothetical protein 2346970 3285619 BF9343_1919 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211634.1 2344598 R 272559 CDS YP_211635.1 60681491 3285617 complement(2346972..2347865) 1 NC_003228.3 Codons 50 to 182 are similar to codons 328 to 461 of Methanosarcina mazei surface layer protein B SlgB SWALL:Q50244 (EMBL:X77929) (652 aa) fasta scores: E(): 1.4e-05, 28.67% id in 136 aa; hypothetical protein 2347865 3285617 BF9343_1920 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211635.1 2346972 R 272559 CDS YP_211636.1 60681492 3285618 complement(2347862..2348389) 1 NC_003228.3 no significant database matches; hypothetical protein 2348389 3285618 BF9343_1921 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211636.1 2347862 R 272559 CDS YP_211637.1 60681493 3285615 complement(2348402..2348905) 1 NC_003228.3 no significant database matches; hypothetical protein 2348905 3285615 BF9343_1922 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211637.1 2348402 R 272559 CDS YP_211638.1 60681494 3285616 complement(2348911..2349867) 1 NC_003228.3 no significant database matches; hypothetical protein 2349867 3285616 BF9343_1923 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211638.1 2348911 R 272559 CDS YP_211639.1 60681495 3285625 complement(2349869..2351011) 1 NC_003228.3 no significant database matches; hypothetical protein 2351011 3285625 BF9343_1924 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211639.1 2349869 R 272559 CDS YP_211640.1 60681496 3285614 complement(2351039..2351887) 1 NC_003228.3 no significant database matches; putative transmembrane protein 2351887 3285614 BF9343_1925 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211640.1 2351039 R 272559 CDS YP_211641.1 60681497 3285623 complement(2352024..2352944) 1 NC_003228.3 no significant database matches; putative transmembrane protein 2352944 3285623 BF9343_1926 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211641.1 2352024 R 272559 CDS YP_211642.1 60681498 3285624 complement(2352949..2353995) 1 NC_003228.3 no significant database hits. This CDS overlaps 12 nt with the adjacent CDS. Possible alternative start site at codon 39.; putative transmembrane protein 2353995 3285624 BF9343_1927 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211642.1 2352949 R 272559 CDS YP_211643.1 60681499 3285621 complement(2353982..2356975) 1 NC_003228.3 no significant database matches; putative transmembrane protein 2356975 3285621 BF9343_1928 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211643.1 2353982 R 272559 CDS YP_211644.1 60681500 3285622 complement(2356980..2357648) 1 NC_003228.3 N-terminus is similar to the C-terminus of Xanthomonas axonopodis hypothetical protein Xac4126 SWALL:Q8PF59 (EMBL:AE012062) (131 aa) fasta scores: E(): 1.7e-13, 52.38% id in 84 aa; hypothetical protein 2357648 3285622 BF9343_1929 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211644.1 2356980 R 272559 CDS YP_211645.1 60681501 3285631 complement(2357670..2359520) 1 NC_003228.3 Similar to Anabaena sp. hypothetical protein ALL3320 SWALL:Q8YRX2 (EMBL:AP003592) (589 aa) fasta scores: E(): 2.1e-09, 21.85% id in 549 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2373 SWALL:Q9I1A6 (EMBL:AE004663) (668 aa) fasta scores: E(): 2.6e-09, 24.45% id in 597 aa; hypothetical protein 2359520 3285631 BF9343_1930 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211645.1 2357670 R 272559 CDS YP_211646.1 60681502 3285620 complement(2359546..2361363) 1 NC_003228.3 no significant database matches; hypothetical protein 2361363 3285620 BF9343_1931 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211646.1 2359546 R 272559 CDS YP_211647.1 60681503 3285630 complement(2361394..2361834) 1 NC_003228.3 Similar to Enterobacteria phage RB49 Gp25 protein 25 SWALL:Q8H9H9 (EMBL:AJ489481) (128 aa) fasta scores: E(): 0.35, 24% id in 100 aa, and to Anabaena sp. hypothetical protein ALL3318 SWALL:Q8YRX4 (EMBL:AP003592) (149 aa) fasta scores: E(): 0.038, 27.9% id in 129 aa; putative bacteriophage Gp25 protein 2361834 3285630 BF9343_1932 Bacteroides fragilis NCTC 9343 putative bacteriophage Gp25 protein YP_211647.1 2361394 R 272559 CDS YP_211648.1 60681504 3285632 complement(2361831..2362289) 1 NC_003228.3 no significant database matches; hypothetical protein 2362289 3285632 BF9343_1933 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211648.1 2361831 R 272559 CDS YP_211649.1 60681505 3285628 complement(2362294..2362713) 1 NC_003228.3 no significant database matches; hypothetical protein 2362713 3285628 BF9343_1934 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211649.1 2362294 R 272559 CDS YP_211650.1 60681506 3285629 complement(2362716..2363123) 1 NC_003228.3 Limited similarity to Cytophaga johnsonae hypothetical 14.8 kDa protein SWALL:Q9WWY0 (EMBL:AF158372) (130 aa) fasta scores: E(): 0.11, 25.92% id in 108 aa; hypothetical protein 2363123 3285629 BF9343_1935 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211650.1 2362716 R 272559 CDS YP_211651.1 60681507 3285626 complement(2363137..2364114) 1 NC_003228.3 no significant database matches; hypothetical protein 2364114 3285626 BF9343_1936 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211651.1 2363137 R 272559 CDS YP_211652.1 60681508 3285627 complement(2364119..2364985) 1 NC_003228.3 no significant database matches; hypothetical protein 2364985 3285627 BF9343_1937 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211652.1 2364119 R 272559 CDS YP_211653.1 60681509 3287598 complement(2364997..2365404) 1 NC_003228.3 Similar to Cytophaga johnsonae hypothetical 14.8 kDa protein SWALL:Q9WWY0 (EMBL:AF158372) (130 aa) fasta scores: E(): 6e-09, 30% id in 120 aa; hypothetical protein 2365404 3287598 BF9343_1938 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211653.1 2364997 R 272559 CDS YP_211654.1 60681510 3285638 complement(2365431..2365859) 1 NC_003228.3 Similar to Cytophaga johnsonae hypothetical 14.8 kDa protein SWALL:Q9WWY0 (EMBL:AF158372) (130 aa) fasta scores: E(): 5.2e-07, 27.61% id in 105 aa; hypothetical protein 2365859 3285638 BF9343_1939 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211654.1 2365431 R 272559 CDS YP_211655.1 60681511 3285636 complement(2365875..2368358) 1 NC_003228.3 Similar to Thermus thermophilus ClpB protein SWALL:CLPB_THETH (SWALL:Q9RA63) (854 aa) fasta scores: E(): 9.8e-52, 38.51% id in 836 aa, and to Aquifex aeolicus ATPase subunit of ATP-dependent protease ClpB or AQ_1672 SWALL:O67588 (EMBL:AE000750) (1006 aa) fasta scores: E(): 2.1e-51, 39.86% id in 770 aa, and to Bradyrhizobium japonicum ATP-dependent protease ATP-binding subunit ClpB or blr1404 SWALL:BAC46669 (EMBL:AP005940) (879 aa) fasta scores: E(): 1e-50, 36.9% id in 867 aa; putative ATP-dependent protease 2368358 3285636 BF9343_1940 Bacteroides fragilis NCTC 9343 putative ATP-dependent protease YP_211655.1 2365875 R 272559 CDS YP_211656.1 60681512 3285637 complement(2368371..2369750) 1 NC_003228.3 no significant database matches; hypothetical protein 2369750 3285637 BF9343_1941 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211656.1 2368371 R 272559 CDS YP_211657.1 60681513 3285635 complement(2369766..2370215) 1 NC_003228.3 Very limited similarity to Helicobacter pylori hypothetical protein Hp0868 SWALL:O25538 (EMBL:AE000596) (153 aa) fasta scores: E(): 9.1, 27.27% id in 132 aa; hypothetical protein 2370215 3285635 BF9343_1942 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211657.1 2369766 R 272559 CDS YP_211658.1 60681514 3285633 complement(2370304..2370693) 1 NC_003228.3 Similar to Cytophaga johnsonae hypothetical 14.8 kDa protein SWALL:Q9WWY0 (EMBL:AF158372) (130 aa) fasta scores: E(): 2.6e-10, 32.28% id in 127 aa; hypothetical protein 2370693 3285633 BF9343_1943 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211658.1 2370304 R 272559 CDS YP_211659.1 60681515 3285634 complement(2371134..2371874) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transcriptional regulator BT1963 SWALL:AAO77070 (EMBL:AE016934) (242 aa) fasta scores: E(): 4.5e-18, 28.8% id in 243 aa; hypothetical protein 2371874 3285634 BF9343_1944 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211659.1 2371134 R 272559 CDS YP_211660.1 60681516 3285644 2372222..2373493 1 NC_003228.3 Similar to Bacillus sphaericus 8-amino-7-oxononanoate synthase BioF SWALL:BIOF_BACSH (SWALL:P22806) (389 aa) fasta scores: E(): 3.8e-45, 40.9% id in 396 aa, and to Oceanobacillus iheyensis glycine C-acetyltransferase ob3054 SWALL:Q8EM07 (EMBL:AP004603) (396 aa) fasta scores: E(): 1.3e-44, 37.31% id in 402 aa, and to Pyrococcus horikoshii 398aa long hypothetical 5-aminolevulinic acid synthase ph0292 SWALL:O58030 (EMBL:AP000001) (398 aa) fasta scores: E(): 5.2e-44, 36.54% id in 405 aa; putative aminotransferase 2373493 3285644 BF9343_1945 Bacteroides fragilis NCTC 9343 putative aminotransferase YP_211660.1 2372222 D 272559 CDS YP_211661.1 60681517 3285643 complement(2373718..2376789) 1 NC_003228.3 Similar to Staphylococcus aureus Mw0068 protein SWALL:Q8NYU5 (EMBL:AP004822) (1050 aa) fasta scores: E(): 6.1e-48, 32.68% id in 1028 aa, and to Staphylococcus aureus hypothetical protein SAV0093 or SA0089 SWALL:Q99XB9 (EMBL:AP003358) (1050 aa) fasta scores: E(): 6.1e-48, 32.58% id in 1028 aa, and to Xanthomonas campestris DNA helicase related protein XCC3133 SWALL:Q8P644 (EMBL:AE012429) (1087 aa) fasta scores: E(): 3.3e-30, 28.03% id in 1127 aa; putative ATP-binding protein 2376789 3285643 BF9343_1946 Bacteroides fragilis NCTC 9343 putative ATP-binding protein YP_211661.1 2373718 R 272559 CDS YP_211662.1 60681518 3285641 complement(2376818..2377003) 1 NC_003228.3 Similar to Methanobacterium thermoautotrophicum hypothetical protein MTH1606 SWALL:O27643 (EMBL:AE000920) (71 aa) fasta scores: E(): 7.3e-05, 42.3% id in 52 aa, and to Archaeoglobus fulgidus 4-oxalocrotonate tautomerase, putative AF0669 SWALL:O29588 (EMBL:AE001058) (63 aa) fasta scores: E(): 0.0072, 31.57% id in 57 aa, and to Neisseria meningitidis putative tautomerase NMA1685 or NMB1474 SWALL:Q9JR69 (EMBL:AL162756) (69 aa) fasta scores: E(): 0.019, 39.34% id in 61 aa, and to Pseudomonas sp. 4-oxalocrotonate tautomerase DmpI SWALL:DMPI_PSESP (SWALL:P49172) (62 aa) fasta scores: E(): 0.02, 37.28% id in 59 aa; putative tautomerase 2377003 3285641 BF9343_1947 Bacteroides fragilis NCTC 9343 putative tautomerase YP_211662.1 2376818 R 272559 CDS YP_211663.1 60681519 3285642 2377335..2377634 1 NC_003228.3 no significant database matches; hypothetical protein 2377634 3285642 BF9343_1948 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211663.1 2377335 D 272559 CDS YP_211664.1 60681520 3285639 2377811..2378488 1 NC_003228.3 Similar to Pseudomonas syringae transcriptional regulator, TetR family PSPTO3576 SWALL:AAO57050 (EMBL:AE016868) (207 aa) fasta scores: E(): 3.6e-05, 31.7% id in 164 aa; putative TetR-family transcriptional regulator 2378488 3285639 BF9343_1949 Bacteroides fragilis NCTC 9343 putative TetR-family transcriptional regulator YP_211664.1 2377811 D 272559 CDS YP_211665.1 60681521 3285650 2379843..2380223 1 NC_003228.3 no significant database matches; hypothetical protein 2380223 3285650 BF9343_1951 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211665.1 2379843 D 272559 CDS YP_211666.1 60681522 3285651 2380279..2381130 1 NC_003228.3 no significant database matches; hypothetical protein 2381130 3285651 BF9343_1952 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211666.1 2380279 D 272559 CDS YP_211667.1 60681523 3285648 2381155..2381628 1 NC_003228.3 no significant database matches; putative transmembrane protein 2381628 3285648 BF9343_1953 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211667.1 2381155 D 272559 CDS YP_211668.1 60681524 3285649 2381682..2382149 1 NC_003228.3 no significant database matches; putative transmembrane protein 2382149 3285649 BF9343_1954 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211668.1 2381682 D 272559 CDS YP_211669.1 60681525 3285647 2382193..2382624 1 NC_003228.3 no significant database matches; putative transmembrane protein 2382624 3285647 BF9343_1955 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211669.1 2382193 D 272559 CDS YP_211670.1 60681526 3285646 2382860..2383300 1 NC_003228.3 no significant database matches; putative transmembrane protein 2383300 3285646 BF9343_1956 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211670.1 2382860 D 272559 CDS YP_211671.1 60681527 3285657 2383391..2384179 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3652 SWALL:AAO78757 (EMBL:AE016941) (262 aa) fasta scores: E(): 3e-71, 63.74% id in 262 aa; hypothetical protein 2384179 3285657 BF9343_1957 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211671.1 2383391 D 272559 CDS YP_211672.1 60681528 3285655 2385254..2386942 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1186 SWALL:AAO76293 (EMBL:AE016930) (562 aa) fasta scores: E(): 7.6e-187, 97.68% id in 562 aa, and to Myxococcus xanthus ABC transporter Mac1 SWALL:Q9F1V6 (EMBL:AB041227) (559 aa) fasta scores: E(): 6.2e-111, 60.03% id in 558 aa, and to Ralstonia solanacearum putative ATP-binding ABC transporter protein RSC2913 or RS00182 SWALL:Q8XVB8 (EMBL:AL646072) (555 aa) fasta scores: E(): 3.2e-107, 57.63% id in 557 aa; putative ATP-binding component of ABC transporter 2386942 3285655 BF9343_1959 Bacteroides fragilis NCTC 9343 putative ATP-binding component of ABC transporter YP_211672.1 2385254 D 272559 CDS YP_211673.1 60681529 3285656 2387138..2389927 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron SusC, outer membrane protein involved in starch binding SusC or BT3702 SWALL:AAO78807 (EMBL:AE016941) (1003 aa) fasta scores: E(): 1.4e-07, 20.3% id in 975 aa, and to Porphyromonas gingivalis hypothetical TonB-linked outer membrane receptor PG47 SWALL:Q9KIB1 (EMBL:AF237557) (867 aa) fasta scores: E(): 4.2e-51, 38.11% id in 947 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3560 SWALL:AAO78666 (EMBL:AE016941) (846 aa) fasta scores: E(): 2.7e-12, 23.97% id in 855 aa; putative TonB-dependent outer membrane receptor protein 2389927 3285656 BF9343_1960 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_211673.1 2387138 D 272559 CDS YP_211674.1 60681530 3285653 2389951..2391846 1 NC_003228.3 no significant database matches; hypothetical protein 2391846 3285653 BF9343_1961 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211674.1 2389951 D 272559 CDS YP_211675.1 60681531 3285654 complement(2391961..2393046) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1184 SWALL:AAO76291 (EMBL:AE016930) (370 aa) fasta scores: E(): 2.3e-69, 58.49% id in 371 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2833 SWALL:AAO77939 (EMBL:AE016937) (361 aa) fasta scores: E(): 4.2e-23, 27.85% id in 359 aa; putative transmembrane endonuclease/exonuclease/phosphatase family protein 2393046 3285654 BF9343_1962 Bacteroides fragilis NCTC 9343 putative transmembrane endonuclease/exonuclease/phosphatase family protein YP_211675.1 2391961 R 272559 CDS YP_211676.1 60681532 3285652 complement(2393187..2395886) 1 NC_003228.3 Similar to C-terminus (from codon 425) of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT1183 SWALL:AAO76290 (EMBL:AE016930) (1336 aa) fasta scores: E(): 1.1e-186, 62.87% id in 913 aa, and C-terminus is similar to the C-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1447 SWALL:AAO76554 (EMBL:AE016931) (785 aa) fasta scores: E(): 3.1e-68, 40.12% id in 663 aa.; putative two-component system sensor kinase/response regulator fusion protein 2395886 3285652 BF9343_1963 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_211676.1 2393187 R 272559 CDS YP_211677.1 60681533 3285663 complement(2395899..2397107) 1 NC_003228.3 Similar to Staphylococcus aureus intercellular adhesin molecule IcaA SWALL:Q9RQP9 (EMBL:AF086783) (412 aa) fasta scores: E(): 1.3e-09, 22.3% id in 417 aa, and to N-terminus of Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT1183 SWALL:AAO76290 (EMBL:AE016930) (1336 aa) fasta scores: E(): 8.7e-124, 77.83% id in 397 aa, and to entire protein of Vibrio vulnificus glycosyltransferase VV12674 SWALL:Q8D9C9 (EMBL:AE016806) (409 aa) fasta scores: E(): 1.1e-28, 28.97% id in 421 aa; putative transmembrane glycosyltransferase 2397107 3285663 BF9343_1964 Bacteroides fragilis NCTC 9343 putative transmembrane glycosyltransferase YP_211677.1 2395899 R 272559 CDS YP_211678.1 60681534 3285664 complement(2397116..2398528) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1182 SWALL:AAO76289 (EMBL:AE016930) (500 aa) fasta scores: E(): 2.3e-74, 46.18% id in 498 aa; hypothetical protein 2398528 3285664 BF9343_1965 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211678.1 2397116 R 272559 CDS YP_211679.1 60681535 3285661 complement(2398525..2399691) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron acyltransferase BT1546 SWALL:AAO76653 (EMBL:AE016932) (335 aa) fasta scores: E(): 9.9e-09, 25.59% id in 336 aa, and to Pseudomonas aeruginosa domain of unknown function Duf33 SWALL:Q8KIR7 (EMBL:AF498413) (629 aa) fasta scores: E(): 1.2e-08, 26.19% id in 313 aa, and to Pseudomonas aeruginosa domain of unknown function Duf33 SWALL:Q8KI23 (EMBL:AF498410) (629 aa) fasta scores: E(): 2.1e-08, 26.19% id in 313 aa; putative transmembrane acyltransferase 2399691 3285661 BF9343_1966 Bacteroides fragilis NCTC 9343 putative transmembrane acyltransferase YP_211679.1 2398525 R 272559 CDS YP_211680.1 60681536 3285662 complement(2399688..2400539) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron glycosyltransferase involved in cell wall biogenesis BT1181 SWALL:AAO76288 (EMBL:AE016930) (283 aa) fasta scores: E(): 3.6e-57, 51.41% id in 282 aa; putative glycosyltransferase 2400539 3285662 BF9343_1967 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_211680.1 2399688 R 272559 CDS YP_211681.1 60681537 3285659 complement(2400552..2401703) 1 NC_003228.3 Similar to Yersinia enterocolitica lipopolysaccharide biosynthesis WbcM protein SWALL:Q56916 (EMBL:Z47767) (358 aa) fasta scores: E(): 4.7e-17, 28.53% id in 382 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1180 SWALL:AAO76287 (EMBL:AE016930) (384 aa) fasta scores: E(): 4.3e-72, 49.6% id in 383 aa, and to Bacteroides thetaiotaomicron glycosyltransferase BT0053 SWALL:AAO75160 (EMBL:AE016926) (374 aa) fasta scores: E(): 4.6e-50, 38.99% id in 377 aa; putative glycosyltransferase protein 2401703 3285659 BF9343_1968 Bacteroides fragilis NCTC 9343 putative glycosyltransferase protein YP_211681.1 2400552 R 272559 CDS YP_211682.1 60681538 3285660 complement(2401700..2402734) 1 NC_003228.3 C-terminus has limited similarity to C-terminus of Bacteroides thetaiotaomicron putative glycosyltransferase BT2938 SWALL:AAO78044 (EMBL:AE016938) (408 aa) fasta scores: E(): 0.0028, 32.6% id in 92 aa; putative glycosyltransferase 2402734 3285660 BF9343_1969 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_211682.1 2401700 R 272559 CDS YP_211683.1 60681539 3285551 complement(2402755..2403873) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1178 SWALL:AAO76285 (EMBL:AE016930) (376 aa) fasta scores: E(): 2.9e-74, 52.09% id in 382 aa; hypothetical protein 2403873 3285551 BF9343_1970 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211683.1 2402755 R 272559 CDS YP_211684.1 60681540 3285658 complement(2403870..2405324) 1 NC_003228.3 Similar to Shigella boydii O-antigen flippase Wzx SWALL:Q93CS0 (EMBL:AF402314) (470 aa) fasta scores: E(): 6.6e-35, 33.33% id in 462 aa, and to Bacteroides thetaiotaomicron putative polysaccharide biosynthesis protein BT1177 SWALL:AAO76284 (EMBL:AE016930) (491 aa) fasta scores: E(): 6.4e-143, 75.88% id in 481 aa, and to Streptococcus pneumoniae putative Cps repeating unit transporter Wzx SWALL:Q8KWP3 (EMBL:AF402095) (474 aa) fasta scores: E(): 3.6e-58, 33.76% id in 459 aa; putative transmembrane O-antigen flippase 2405324 3285658 BF9343_1971 Bacteroides fragilis NCTC 9343 putative transmembrane O-antigen flippase YP_211684.1 2403870 R 272559 CDS YP_211685.1 60681541 3285549 complement(2405406..2406359) 1 NC_003228.3 Similar to Streptococcus agalactiae putative capsular polysaccharide protein CpsI SWALL:Q9RPC3 (EMBL:AF163833) (322 aa) fasta scores: E(): 3.7e-19, 29.11% id in 316 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1176 SWALL:AAO76283 (EMBL:AE016930) (286 aa) fasta scores: E(): 2.3e-52, 51.23% id in 283 aa, and to Clostridium perfringens capsular polysaccharide biosynthesis protein CPE0501 SWALL:Q8XN37 (EMBL:AP003187) (326 aa) fasta scores: E(): 1.5e-32, 40.96% id in 249 aa; putative capsular polysaccharide glycosyltransferase 2406359 3285549 BF9343_1972 Bacteroides fragilis NCTC 9343 putative capsular polysaccharide glycosyltransferase YP_211685.1 2405406 R 272559 CDS YP_211686.1 60681542 3285666 complement(2406749..2407969) 1 NC_003228.3 Similar to Salmonella enterica O-antigen WbbF protein SWALL:Q52257 (EMBL:L39794) (459 aa) fasta scores: E(): 2e-10, 23.36% id in 351 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1167 SWALL:AAO76274 (EMBL:AE016930) (395 aa) fasta scores: E(): 2.2e-66, 60.96% id in 415 aa; putative capsule-related protein 2407969 3285666 BF9343_1974 Bacteroides fragilis NCTC 9343 putative capsule-related protein YP_211686.1 2406749 R 272559 CDS YP_211687.1 60681543 3285667 complement(2408183..2409073) 1 NC_003228.3 Similar to Sphingomonas sp. S88 glycosyl transferase SpsQ SWALL:P74817 (EMBL:U51197) (315 aa) fasta scores: E(): 4.3e-13, 24.75% id in 307 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1166 SWALL:AAO76273 (EMBL:AE016930) (299 aa) fasta scores: E(): 7.5e-81, 69.01% id in 284 aa, and to Clostridium acetobutylicum predicted glycosyltransferase CAC3069 SWALL:Q97EN9 (EMBL:AE007804) (299 aa) fasta scores: E(): 3.1e-29, 34.23% id in 260 aa; putative capsule-related glycosyltransferase 2409073 3285667 BF9343_1975 Bacteroides fragilis NCTC 9343 putative capsule-related glycosyltransferase YP_211687.1 2408183 R 272559 CDS YP_211688.1 60681544 3285557 complement(2409116..2410450) 1 NC_003228.3 Similar to Salmonella muenchen O-antigen polymerase Rfc SWALL:RFC_SALMU (SWALL:Q00474) (399 aa) fasta scores: E(): 3.5e-05, 23.96% id in 338 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1165 SWALL:AAO76272 (EMBL:AE016930) (455 aa) fasta scores: E(): 1.1e-116, 62.2% id in 426 aa; putative transmembrane surface-related protein 2410450 3285557 BF9343_1976 Bacteroides fragilis NCTC 9343 putative transmembrane surface-related protein YP_211688.1 2409116 R 272559 CDS YP_211689.1 60681545 3285665 complement(2410443..2412659) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1164 SWALL:AAO76271 (EMBL:AE016930) (742 aa) fasta scores: E(): 3.9e-156, 58.35% id in 742 aa; putative transmembrane protein 2412659 3285665 BF9343_1977 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211689.1 2410443 R 272559 CDS YP_211690.1 60681546 3285555 complement(2412670..2413419) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1163 SWALL:AAO76270 (EMBL:AE016930) (249 aa) fasta scores: E(): 1.3e-58, 66.53% id in 248 aa; putative outer membrane protein 2413419 3285555 BF9343_1978 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211690.1 2412670 R 272559 CDS YP_211691.1 60681547 3285556 complement(2413731..2414984) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1162 SWALL:Q8A8K5 (EMBL:AE016930) (409 aa) fasta scores: E(): 1.2e-138, 83.16% id in 386 aa, and to Vibrio parahaemolyticus hypothetical protein vp1356 SWALL:Q87PZ4 (EMBL:AP005077) (393 aa) fasta scores: E(): 1.3e-16, 29.55% id in 362 aa; hypothetical protein 2414984 3285556 BF9343_1979 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211691.1 2413731 R 272559 CDS YP_211692.1 60681548 3285553 2415148..2416545 1 NC_003228.3 Similar to Lactobacillus delbrueckii aminopeptidase C PepC SWALL:PEPC_LACDL (SWALL:Q48543) (449 aa) fasta scores: E(): 1.4e-59, 37.79% id in 418 aa, and to Bacteroides thetaiotaomicron putative aminopeptidase C BT1161 SWALL:Q8A8K6 (EMBL:AE016930) (466 aa) fasta scores: E(): 5.7e-155, 81.54% id in 466 aa, and to Rattus norvegicus bleomycin hydrolase BlmH SWALL:BLMH_RAT (SWALL:P70645) (454 aa) fasta scores: E(): 4.2e-62, 37.16% id in 452 aa; putative aminopeptidase 2416545 3285553 BF9343_1980 Bacteroides fragilis NCTC 9343 putative aminopeptidase YP_211692.1 2415148 D 272559 CDS YP_211693.1 60681549 3289167 2417110..2418462 1 NC_003228.3 Similar to Vibrio cholerae Na+-translocating NADH-quinone reductase NqrA or vc2295 SWALL:NQRA_VIBCH (SWALL:Q9KPS1) (446 aa) fasta scores: E(): 1.8e-48, 34.37% id in 448 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1160 SWALL:AAO76267 (EMBL:AE016930) (449 aa) fasta scores: E(): 4e-154, 87.75% id in 449 aa, and to Porphyromonas gingivalis 50 kDa antigen PG1 SWALL:Q9X6S0 (EMBL:AF144076) (451 aa) fasta scores: E(): 1.1e-89, 54.18% id in 454 aa; putative Na+-translocating NADH-quinone reductase subunit A 2418462 nqrA 3289167 nqrA Bacteroides fragilis NCTC 9343 putative Na+-translocating NADH-quinone reductase subunit A YP_211693.1 2417110 D 272559 CDS YP_211694.1 60681550 3289169 2418494..2419672 1 NC_003228.3 Similar to Vibrio harveyi Na+-translocating NADH-quinone reductase NqrB SWALL:NQRB_VIBHA (SWALL:Q9RFW0) (413 aa) fasta scores: E(): 2.1e-50, 41.54% id in 414 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1159 SWALL:AAO76266 (EMBL:AE016930) (390 aa) fasta scores: E(): 1.3e-135, 86.48% id in 392 aa, and to Pseudomonas aeruginosa Na+-translocating NADH-quinone reductase NqrB or pa2998 SWALL:NQRB_PSEAE (SWALL:Q9HZK7) (403 aa) fasta scores: E(): 4.2e-51, 44.74% id in 409 aa; putative Na+-translocating NADH-quinone reductase subunit B 2419672 nqrB 3289169 nqrB Bacteroides fragilis NCTC 9343 putative Na+-translocating NADH-quinone reductase subunit B YP_211694.1 2418494 D 272559 CDS YP_211695.1 60681551 3286075 2419687..2420364 1 NC_003228.3 Similar to Vibrio cholerae Na+-translocating NADH-quinone reductase NqrC or vc2293 SWALL:NQRC_VIBCH (SWALL:Q9X4Q5) (256 aa) fasta scores: E(): 7.9e-11, 28.82% id in 229 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1158 SWALL:AAO76265 (EMBL:AE016930) (226 aa) fasta scores: E(): 2.3e-64, 80.71% id in 223 aa, and to Pseudomonas aeruginosa Na+-translocating NADH-quinone reductase NqrC or pa2997 SWALL:NQRC_PSEAE (SWALL:Q9HZK8) (261 aa) fasta scores: E(): 9.2e-11, 29.13% id in 254 aa; putative Na+-translocating NADH-quinone reductase subunit C 2420364 nqrC 3286075 nqrC Bacteroides fragilis NCTC 9343 putative Na+-translocating NADH-quinone reductase subunit C YP_211695.1 2419687 D 272559 CDS YP_211696.1 60681552 3288106 2420381..2421013 1 NC_003228.3 Similar to Haemophilus influenzae Na+-translocating NADH-quinone reductase NqrD or hi0168 SWALL:NQRD_HAEIN (SWALL:P43958) (208 aa) fasta scores: E(): 1.8e-41, 56.93% id in 202 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1157 SWALL:AAO76264 (EMBL:AE016930) (213 aa) fasta scores: E(): 9.1e-71, 88.62% id in 211 aa, and to Yersinia pestis Na+-translocating NADH-quinone reductase NqrD or YPO3237 or Y0954 SWALL:NQRD_YERPE (SWALL:Q8ZBZ3) (209 aa) fasta scores: E(): 1.1e-40, 56.06% id in 198 aa; putative Na+-translocating quinone reductase subunit D 2421013 nqrD 3288106 nqrD Bacteroides fragilis NCTC 9343 putative Na+-translocating quinone reductase subunit D YP_211696.1 2420381 D 272559 CDS YP_211697.1 60681553 3289156 2421042..2421668 1 NC_003228.3 Similar to Haemophilus influenzae Na+-translocating NADH-quinone reductase NqrE or hi0170 SWALL:NQRE_HAEIN (SWALL:P71342) (198 aa) fasta scores: E(): 2.1e-29, 62.01% id in 208 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1156 SWALL:AAO76263 (EMBL:AE016930) (208 aa) fasta scores: E(): 4.9e-66, 91.34% id in 208 aa, and to Shewanella oneidensis NADH:ubiquinone oxidoreductase, Na+-translocating, hydrophobic membrane protein NqrE Nqre-2 or so1107 SWALL:Q8EHV5 (EMBL:AE015555) (202 aa) fasta scores: E(): 2.7e-37, 54.24% id in 212 aa; Na+-translocating NADH-quinone reductase subunit E 2421668 nqrE 3289156 nqrE Bacteroides fragilis NCTC 9343 Na+-translocating NADH-quinone reductase subunit E YP_211697.1 2421042 D 272559 CDS YP_211698.1 60681554 3286101 2421691..2422962 1 NC_003228.3 Similar to Vibrio cholerae Na+-translocating NADH-quinone reductase NqrF or vc2290 SWALL:NQRF_VIBCH (SWALL:Q9X4Q8) (408 aa) fasta scores: E(): 1.5e-38, 50.23% id in 426 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1155 SWALL:AAO76262 (EMBL:AE016930) (422 aa) fasta scores: E(): 5.4e-145, 87.64% id in 421 aa, and to Chlamydia pneumoniae probable Na+-translocating NADH-quinone reductase NqrF or Nqr6 or CPN0883 or CP0983 SWALL:NQRF_CHLPN (SWALL:Q9Z723) (431 aa) fasta scores: E(): 1.6e-50, 38.33% id in 433 aa; putative Na+-translocating NADH-quinone reductase subunit F 2422962 nqrF 3286101 nqrF Bacteroides fragilis NCTC 9343 putative Na+-translocating NADH-quinone reductase subunit F YP_211698.1 2421691 D 272559 CDS YP_211699.1 60681555 3285194 2423047..2424378 1 NC_003228.3 Similar to Escherichia coli ATP-independent RNA helicase DbpA or B1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 1.4e-35, 33.02% id in 436 aa, and to Bacteroides thetaiotaomicron ATP-independent RNA helicase BT1154 SWALL:AAO76261 (EMBL:AE016930) (444 aa) fasta scores: E(): 2.7e-121, 72.08% id in 437 aa, and to Vibrio cholerae ATP-dependent RNA helicase DbpA vc2564 SWALL:Q9KP15 (EMBL:AE004325) (460 aa) fasta scores: E(): 7.9e-41, 36.67% id in 439 aa; putative ATP-independent RNA helicase 2424378 dbpA 3285194 dbpA Bacteroides fragilis NCTC 9343 putative ATP-independent RNA helicase YP_211699.1 2423047 D 272559 CDS YP_211700.1 60681556 3287528 2424892..2425959 1 NC_003228.3 Similar to Listeria innocua phosphoserine aminotransferase SerC or LIN2957 SWALL:SERC_LISIN (SWALL:Q926T3) (363 aa) fasta scores: E(): 6.5e-60, 49.85% id in 351 aa, and to Bacteroides thetaiotaomicron phosphoserine aminotransferase BT1153 SWALL:AAO76260 (EMBL:AE016930) (355 aa) fasta scores: E(): 3.1e-127, 89.85% id in 355 aa; putative phosphoserine aminotransferase 2425959 serC 3287528 serC Bacteroides fragilis NCTC 9343 putative phosphoserine aminotransferase YP_211700.1 2424892 D 272559 CDS YP_211701.1 60681557 3287436 2426073..2426993 1 NC_003228.3 Similar to Entodinium caudatum D-3-phosphoglycerate dehydrogenase SWALL:O77446 (EMBL:AF079881) (318 aa) fasta scores: E(): 4e-72, 65.57% id in 305 aa, and to Bacteroides thetaiotaomicron D-3-phosphoglycerate dehydrogenase BT1152 SWALL:Q8A8L5 (EMBL:AE016930) (306 aa) fasta scores: E(): 1.4e-99, 89.54% id in 306 aa, and to Porphyromonas gingivalis W83 D-isomer specific 2-hydroxyacid dehydrogenase family protein PG1279 SWALL:AAQ66359 (EMBL:AE017176) (306 aa) fasta scores: E(): 2.5e-80, 76.06% id in 305 aa; putative D-3-phosphoglycerate dehydrogenase 2426993 serA 3287436 serA Bacteroides fragilis NCTC 9343 putative D-3-phosphoglycerate dehydrogenase YP_211701.1 2426073 D 272559 CDS YP_211702.1 60681558 3285554 2427006..2428253 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1151 SWALL:AAO76258 (EMBL:AE016930) (415 aa) fasta scores: E(): 4.3e-154, 89.88% id in 415 aa, and to Clostridium acetobutylicum related to Hth domain of SpoOJ/ParA/ParB/RepB family, involved in chromosome partitioning CAC0016 SWALL:Q97N22 (EMBL:AE007515) (414 aa) fasta scores: E(): 4.3e-81, 49.27% id in 416 aa; hypothetical protein 2428253 3285554 BF9343_1990 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211702.1 2427006 D 272559 CDS YP_211703.1 60681559 3285563 2428447..2428902 1 NC_003228.3 Similar to Legionella micdadei outer membrane protein Mip precursor Mip SWALL:MIP_LEGMI (SWALL:P31106) (243 aa) fasta scores: E(): 2.4e-16, 41.98% id in 131 aa, and to Bacteroides thetaiotaomicron peptidyl-prolyl cis-trans isomerase BT0165 SWALL:Q8ABE5 (EMBL:AE016926) (133 aa) fasta scores: E(): 1.6e-37, 67.66% id in 133 aa; putative peptidyl-prolyl cis-trans isomerase 2428902 3285563 BF9343_1991 Bacteroides fragilis NCTC 9343 putative peptidyl-prolyl cis-trans isomerase YP_211703.1 2428447 D 272559 CDS YP_211704.1 60681560 3285552 2428929..2429546 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1150 SWALL:AAO76257 (EMBL:AE016930) (202 aa) fasta scores: E(): 5.6e-69, 89.44% id in 199 aa, and to Neisseria meningitidis hypothetical protein NMB2153 SWALL:Q9JXA1 (EMBL:AE002563) (203 aa) fasta scores: E(): 2.1e-32, 49.13% id in 173 aa, and to Neisseria meningitidis hypothetical protein NMA0240 SWALL:Q9JWU4 (EMBL:AL162752) (203 aa) fasta scores: E(): 2.8e-32, 49.13% id in 173 aa; hypothetical protein 2429546 3285552 BF9343_1992 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211704.1 2428929 D 272559 CDS YP_211705.1 60681561 3285562 2429624..2430712 1 NC_003228.3 Similar to Haemophilus parainfluenzae type II restriction enzyme HpaII HpaIIR SWALL:T2H2_HAEPA (SWALL:P36433) (358 aa) fasta scores: E(): 1.1e-31, 31.21% id in 362 aa, and to Bacteroides thetaiotaomicron type II restriction enzyme HpaII BT1149 SWALL:AAO76256 (EMBL:AE016930) (361 aa) fasta scores: E(): 1.7e-116, 80.93% id in 362 aa; putative type II restriction enzyme 2430712 3285562 BF9343_1993 Bacteroides fragilis NCTC 9343 putative type II restriction enzyme YP_211705.1 2429624 D 272559 CDS YP_211706.1 60681562 3285564 2430737..2431306 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative NADH dehydrogenase/NAD BT1148 SWALL:AAO76255 (EMBL:AE016930) (189 aa) fasta scores: E(): 2.7e-63, 78.19% id in 188 aa, and to Selenomonas ruminantium subsp. ruminantium FMN/NADPH-binding flavoprotein GmaF SWALL:Q9F675 (EMBL:AF297121) (198 aa) fasta scores: E(): 7.5e-16, 34.67% id in 199 aa, and to Methanosarcina acetivorans nitroreductase ma1774 SWALL:Q8TPY0 (EMBL:AE010856) (220 aa) fasta scores: E(): 1.4e-14, 34.65% id in 176 aa; hypothetical protein 2431306 3285564 BF9343_1994 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211706.1 2430737 D 272559 CDS YP_211707.1 60681563 3285560 complement(2431447..2434296) 1 NC_003228.3 Similar to Escherichia coli glycine dehydrogenase [decarboxylating] GcvP or B2903 SWALL:GCSP_ECOLI (SWALL:P33195) (956 aa) fasta scores: E(): 1.7e-183, 52.27% id in 945 aa, and to Bacteroides thetaiotaomicron glycine dehydrogenase BT1147 SWALL:AAO76254 (EMBL:AE016930) (949 aa) fasta scores: E(): 0, 88.09% id in 949 aa, and to Anabaena sp. glycine cleavage system protein P ALL4607 SWALL:Q8YNF9 (EMBL:AP003597) (983 aa) fasta scores: E(): 1.5e-197, 54.76% id in 955 aa; putative glycine dehydrogenase [decarboxylating] 2434296 3285560 BF9343_1995 Bacteroides fragilis NCTC 9343 putative glycine dehydrogenase [decarboxylating] YP_211707.1 2431447 R 272559 CDS YP_211708.1 60681564 3285561 complement(2434339..2434950) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative metallo-beta-lactamase BT1146 SWALL:Q8A8M1 (EMBL:AE016930) (203 aa) fasta scores: E(): 5.1e-78, 88.67% id in 203 aa, and to Porphyromonas gingivalis W83 metallo-beta-lactamase family protein PG1306 SWALL:AAQ66379 (EMBL:AE017176) (214 aa) fasta scores: E(): 5.9e-31, 42.15% id in 204 aa, and to Chromobacterium violaceum ATCC 12472 probable metallo-beta-lactamase cv0087 SWALL:AAQ57766 (EMBL:AE016910) (216 aa) fasta scores: E(): 5.8e-30, 43.56% id in 202 aa; putative metallo-beta-lactamase 2434950 3285561 BF9343_1996 Bacteroides fragilis NCTC 9343 putative metallo-beta-lactamase YP_211708.1 2434339 R 272559 CDS YP_211709.1 60681565 3286741 complement(2434997..2435617) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 methyltransferase GidB or B3740 or C4668 or Z5240 or ECS4682 SWALL:GIDB_ECOLI (SWALL:P17113) (207 aa) fasta scores: E(): 1.6e-12, 36.05% id in 147 aa, and to Bacteroides thetaiotaomicron glucose-inhibited division protein BT1145 SWALL:Q8A8M2 (EMBL:AE016930) (206 aa) fasta scores: E(): 1e-71, 87.86% id in 206 aa, and to Porphyromonas gingivalis W83 glucose-inhibited division protein B GidB or PG1307 SWALL:AAQ66380 (EMBL:AE017176) (221 aa) fasta scores: E(): 3.6e-48, 63.59% id in 206 aa; putative glucose-inhibited cell division protein 2435617 gidB 3286741 gidB Bacteroides fragilis NCTC 9343 putative glucose-inhibited cell division protein YP_211709.1 2434997 R 272559 CDS YP_211710.1 60681566 3285558 complement(2435711..2436565) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1144 SWALL:Q8A8M3 (EMBL:AE016930) (283 aa) fasta scores: E(): 6e-95, 79.07% id in 282 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0466 SWALL:AAQ65663 (EMBL:AE017173) (251 aa) fasta scores: E(): 2.4e-28, 37.71% id in 228 aa; hypothetical protein 2436565 3285558 BF9343_1998 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211710.1 2435711 R 272559 CDS YP_211711.1 60681567 3285559 2436704..2437099 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1140 SWALL:Q8A8M7 (EMBL:AE016930) (132 aa) fasta scores: E(): 1.2e-18, 50% id in 132 aa; hypothetical protein 2437099 3285559 BF9343_1999 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211711.1 2436704 D 272559 CDS YP_211712.1 60681568 3285570 2437288..2439495 1 NC_003228.3 C-terminus from codon 370 is similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative TonB-dependent outer membrane receptor protein BT1093 SWALL:AAO76200 (EMBL:AE016930) (367 aa) fasta scores: E(): 1.9e-122, 78.68% id in 366 aa, and N-terminus is similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1139 SWALL:AAO76246 (EMBL:AE016930) (352 aa) fasta scores: E(): 2.2e-104, 77.77% id in 333 aa; putative TonB-dependent outer membrane receptor protein 2439495 3285570 BF9343_2000 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_211712.1 2437288 D 272559 CDS YP_211713.1 60681569 3285569 2439546..2439857 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative heavy-metal binding protein BT1092 SWALL:AAO76199 (EMBL:AE016930) (119 aa) fasta scores: E(): 2.9e-22, 64.07% id in 103 aa; possible exported heavy-metal binding protein 2439857 3285569 BF9343_2001 Bacteroides fragilis NCTC 9343 possible exported heavy-metal binding protein YP_211713.1 2439546 D 272559 CDS YP_211714.1 60681570 3285571 2439909..2442119 1 NC_003228.3 Similar to Synechocystis sp. cation-transporting ATPase PacS or sll1920 SWALL:ATCS_SYNY3 (SWALL:P73241) (745 aa) fasta scores: E(): 5.3e-104, 44.97% id in 736 aa, and to Bacteroides thetaiotaomicron cation-transporting ATPase PacS BT1091 SWALL:AAO76198 (EMBL:AE016930) (738 aa) fasta scores: E(): 0, 84.1% id in 736 aa, and to Bacillus halodurans copper-transporting ATPase BH0557 SWALL:Q9KFC7 (EMBL:AP001508) (806 aa) fasta scores: E(): 1.2e-107, 44.47% id in 742 aa; putative transmembrane cation-transporting ATPase 2442119 3285571 BF9343_2002 Bacteroides fragilis NCTC 9343 putative transmembrane cation-transporting ATPase YP_211714.1 2439909 D 272559 CDS YP_211715.1 60681571 3285568 complement(2442297..2443136) 1 NC_003228.3 Similar to Pseudomonas indica transcriptional regulator PobR SWALL:Q9F5V9 (EMBL:AF302797) (285 aa) fasta scores: E(): 2.5e-09, 32.59% id in 135 aa, and to Bacteroides thetaiotaomicron AraC-type transcription regulator BT1090 SWALL:AAO76197 (EMBL:AE016930) (278 aa) fasta scores: E(): 4.4e-76, 66.3% id in 279 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1797 SWALL:AAO76904 (EMBL:AE016933) (296 aa) fasta scores: E(): 4.8e-39, 39.85% id in 281 aa; putative AraC-type transcriptional regulator 2443136 3285568 BF9343_2003 Bacteroides fragilis NCTC 9343 putative AraC-type transcriptional regulator YP_211715.1 2442297 R 272559 CDS YP_211716.1 60681572 3285567 2443202..2443867 1 NC_003228.3 Similar to the first 220 codons of Myxococcus xanthus lipoate-protein ligase B LipB SWALL:LIPB_MYXXA (SWALL:Q9X6X4) (357 aa) fasta scores: E(): 5.5e-29, 46.56% id in 189 aa, and to Bacteroides thetaiotaomicron lipoate-protein ligase B BT1089 SWALL:AAO76196 (EMBL:AE016930) (227 aa) fasta scores: E(): 6.7e-79, 85.04% id in 214 aa; putative lipoate-protein ligase 2443867 3285567 BF9343_2004 Bacteroides fragilis NCTC 9343 putative lipoate-protein ligase YP_211716.1 2443202 D 272559 CDS YP_211717.1 60681573 3285565 complement(2443871..2444149) 1 NC_003228.3 no significant database matches; hypothetical protein 2444149 3285565 BF9343_2005 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211717.1 2443871 R 272559 CDS YP_211718.1 60681574 3285578 complement(2446114..2448102) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative oligopeptide transporter BT1086 SWALL:AAO76193 (EMBL:AE016930) (662 aa) fasta scores: E(): 0, 91.54% id in 662 aa, and to Prevotella albensis hypothetical 42.6 kDa protein SWALL:Q9XAY2 (EMBL:AJ243361) (407 aa) fasta scores: E(): 5.6e-117, 76.71% id in 408 aa, and to Xylella fastidiosa oligopeptide transporter PD1301 SWALL:AAO29150 (EMBL:AE012558) (653 aa) fasta scores: E(): 9.3e-34, 31.1% id in 672 aa; putative transmembrane oligopeptide transporter 2448102 3285578 BF9343_2007 Bacteroides fragilis NCTC 9343 putative transmembrane oligopeptide transporter YP_211718.1 2446114 R 272559 CDS YP_211719.1 60681575 3285577 complement(2448233..2448628) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1085 SWALL:AAO76192 (EMBL:AE016930) (131 aa) fasta scores: E(): 2.8e-41, 80.15% id in 131 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4048 SWALL:AAO79153 (EMBL:AE016943) (373 aa) fasta scores: E(): 2e-10, 36% id in 125 aa; hypothetical protein 2448628 3285577 BF9343_2008 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211719.1 2448233 R 272559 CDS YP_211720.1 60681576 3285575 complement(2448812..2450131) 1 NC_003228.3 C-terminus is similar to the C-terminus of Escherichia coli sensor protein AtoS or B2219 SWALL:ATOS_ECOLI (SWALL:Q06067) (608 aa) fasta scores: E(): 1.7e-11, 25.95% id in 393 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT0855 SWALL:AAO75962 (EMBL:AE016929) (425 aa) fasta scores: E(): 1.1e-36, 38.35% id in 438 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT0689 SWALL:AAO75796 (EMBL:AE016928) (438 aa) fasta scores: E(): 3.2e-34, 33.48% id in 448 aa; putative two-component sensor histidine kinase protein 2450131 3285575 BF9343_2009 Bacteroides fragilis NCTC 9343 putative two-component sensor histidine kinase protein YP_211720.1 2448812 R 272559 CDS YP_211721.1 60681577 3285576 complement(2450151..2451548) 1 NC_003228.3 Similar to Rhizobium meliloti C4-dicarboxylate transport transcriptional regulatory protein DctD or rb1525 or smb20613 SWALL:DCTD_RHIME (SWALL:P13632) (460 aa) fasta scores: E(): 7.9e-45, 35.32% id in 453 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT0856 SWALL:AAO75963 (EMBL:AE016929) (458 aa) fasta scores: E(): 4.9e-98, 59.6% id in 453 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT1469 SWALL:AAO76576 (EMBL:AE016932) (453 aa) fasta scores: E(): 5.8e-69, 43.36% id in 452 aa; putative two-component response regulator transcriptional regulatory protein 2451548 3285576 BF9343_2010 Bacteroides fragilis NCTC 9343 putative two-component response regulator transcriptional regulatory protein YP_211721.1 2450151 R 272559 CDS YP_211722.1 60681578 3285573 2451710..2453068 1 NC_003228.3 no significant database matches; putative transmembrane protein 2453068 3285573 BF9343_2011 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211722.1 2451710 D 272559 CDS YP_211723.1 60681579 3285574 2453250..2454617 1 NC_003228.3 no significant database matches; hypothetical protein 2454617 3285574 BF9343_2012 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211723.1 2453250 D 272559 CDS YP_211724.1 60681580 3285585 2454631..2457042 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter permease BT1465 SWALL:Q8A7Q9 (EMBL:AE016931) (806 aa) fasta scores: E(): 9.7e-58, 28.7% id in 836 aa, and to Porphyromonas gingivalis W83 ABC transporter, permease protein, putative PG0683 SWALL:AAQ65858 (EMBL:AE017174) (788 aa) fasta scores: E(): 2.1e-42, 24.39% id in 824 aa, and to Bacteroides thetaiotaomicron putative ABC transporter permease BT0861 SWALL:Q8A9F4 (EMBL:AE016929) (781 aa) fasta scores: E(): 2.1e-33, 25.64% id in 819 aa; putative transporter permease protein 2457042 3285585 BF9343_2013 Bacteroides fragilis NCTC 9343 putative transporter permease protein YP_211724.1 2454631 D 272559 CDS YP_211725.1 60681581 3285572 2457059..2457733 1 NC_003228.3 Similar to Erwinia chrysanthemi ATPase UntA SWALL:Q8RKC8 (EMBL:AJ438188) (235 aa) fasta scores: E(): 1.9e-36, 50.9% id in 222 aa, and to Bacteroides thetaiotaomicron putative ABC transporter ATP-binding protein BT0860 SWALL:Q8A9F5 (EMBL:AE016929) (224 aa) fasta scores: E(): 1e-53, 69.23% id in 221 aa, and to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG0685 SWALL:AAQ65860 (EMBL:AE017174) (219 aa) fasta scores: E(): 1.9e-50, 66.97% id in 218 aa; putative ATP-binding ABC transporter protein 2457733 3285572 BF9343_2014 Bacteroides fragilis NCTC 9343 putative ATP-binding ABC transporter protein YP_211725.1 2457059 D 272559 CDS YP_211726.1 60681582 3287630 complement(2457786..2458385) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1084 SWALL:AAO76191 (EMBL:AE016930) (199 aa) fasta scores: E(): 1.7e-46, 64.32% id in 199 aa; hypothetical protein 2458385 3287630 BF9343_2015 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211726.1 2457786 R 272559 CDS YP_211727.1 60681583 3285586 complement(2458401..2459006) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 probable GTP-binding protein EngB or B3865 or C4812 SWALL:ENGB_ECOLI (SWALL:P24253) (210 aa) fasta scores: E(): 1.8e-17, 39.5% id in 162 aa, and to Bacteroides thetaiotaomicron putative GTP-binding protein BT1083 SWALL:AAO76190 (EMBL:AE016930) (202 aa) fasta scores: E(): 7.2e-67, 89.39% id in 198 aa; putative GTP-binding cell division protein 2459006 3285586 BF9343_2016 Bacteroides fragilis NCTC 9343 putative GTP-binding cell division protein YP_211727.1 2458401 R 272559 CDS YP_211728.1 60681584 3285584 complement(2459021..2460469) 1 NC_003228.3 Similar to Homo sapiens sodium-dependent multivitamin transporter Slc5a6 or SmvT SWALL:SL56_HUMAN (SWALL:Q9Y289) (635 aa) fasta scores: E(): 2.1e-20, 27.99% id in 393 aa, and to Bacteroides thetaiotaomicron Na+/solute symporter BT1082 SWALL:Q8A8T5 (EMBL:AE016930) (438 aa) fasta scores: E(): 3e-139, 80.09% id in 432 aa, and to Bacteroides thetaiotaomicron sodium/iodide co-transporter BT3623 SWALL:Q8A1N6 (EMBL:AE016941) (495 aa) fasta scores: E(): 1.8e-92, 48.22% id in 479 aa; putative transmembrane sodium-solute transporter 2460469 3285584 BF9343_2017 Bacteroides fragilis NCTC 9343 putative transmembrane sodium-solute transporter YP_211728.1 2459021 R 272559 CDS YP_211729.1 60681585 3285582 complement(2460975..2461490) 1 NC_003228.3 Similar to Haemophilus influenzae hypothetical protein Hi0318 SWALL:Y318_HAEIN (SWALL:P43984) (172 aa) fasta scores: E(): 2.5e-37, 57.39% id in 169 aa, and to Pasteurella multocida hypothetical protein Pm0984 SWALL:Q9CM58 (EMBL:AE006137) (172 aa) fasta scores: E(): 2.5e-37, 58.58% id in 169 aa, and to Neisseria meningitidis putative integral membrane protein NMA1102 or NMB0883 SWALL:Q9JRI2 (EMBL:AL162755) (169 aa) fasta scores: E(): 1.7e-32, 51.47% id in 169 aa; putative transmembrane protein 2461490 3285582 BF9343_2018 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211729.1 2460975 R 272559 CDS YP_211730.1 60681586 3285583 complement(2461773..2462183) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1895 SWALL:AAO77002 (EMBL:AE016933) (150 aa) fasta scores: E(): 9.6e-19, 47.45% id in 118 aa; hypothetical protein 2462183 3285583 BF9343_2019 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211730.1 2461773 R 272559 CDS YP_211731.1 60681587 3289308 2462460..2463077 1 NC_003228.3 Similar to Deinococcus radiodurans recombination protein RecR or dr0198 SWALL:RECR_DEIRA (SWALL:Q9ZNA2) (220 aa) fasta scores: E(): 2.6e-33, 48.24% id in 199 aa, and to Bacteroides thetaiotaomicron recombination protein RecR BT1081 SWALL:Q8A8T6 (EMBL:AE016930) (205 aa) fasta scores: E(): 2.8e-70, 92.68% id in 205 aa, and to Porphyromonas gingivalis W83 recombination protein RecR or PG1255 SWALL:AAQ66338 (EMBL:AE017176) (207 aa) fasta scores: E(): 5e-52, 66.34% id in 205 aa; putative RecR-family recombination protein 2463077 recR 3289308 recR Bacteroides fragilis NCTC 9343 putative RecR-family recombination protein YP_211731.1 2462460 D 272559 CDS YP_211732.1 60681588 3285580 2463116..2463565 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1080 SWALL:AAO76187 (EMBL:AE016930) (149 aa) fasta scores: E(): 8.5e-35, 61.07% id in 149 aa; putative transmembrane protein 2463565 3285580 BF9343_2021 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211732.1 2463116 D 272559 CDS YP_211733.1 60681589 3285581 2463566..2464105 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 spermidine N SpeG or B1584 or Z2571 or ECS2290 SWALL:ATDA_ECOLI (SWALL:P37354) (185 aa) fasta scores: E(): 1.3e-06, 26.9% id in 171 aa, and to Bacteroides thetaiotaomicron acetyltransferase BT1079 SWALL:AAO76186 (EMBL:AE016930) (179 aa) fasta scores: E(): 2.4e-57, 74.15% id in 178 aa, and to Staphylococcus epidermidis spermidine acetyltransferase se0046 SWALL:Q8CU70 (EMBL:AE016744) (165 aa) fasta scores: E(): 3.4e-09, 26.54% id in 162 aa; putative acetyltransferase 2464105 3285581 BF9343_2022 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_211733.1 2463566 D 272559 CDS YP_211734.1 60681590 3285592 complement(2464108..2464698) 1 NC_003228.3 Similar to Pseudomonas aeruginosa AlgH or pa0405 SWALL:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): 8.2e-10, 30% id in 170 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1078 SWALL:AAO76185 (EMBL:AE016930) (196 aa) fasta scores: E(): 1.8e-63, 80.1% id in 196 aa, and to Chlorobium tepidum hypothetical protein CT0663 SWALL:Q8KEM4 (EMBL:AE012839) (187 aa) fasta scores: E(): 5.6e-19, 34.27% id in 178 aa; putative transcriptional regulator 2464698 3285592 BF9343_2023 Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_211734.1 2464108 R 272559 CDS YP_211735.1 60681591 3285579 complement(2464770..2466086) 1 NC_003228.3 Similar to Thermococcus litoralis alanine glyoxylate transaminase Agt SWALL:Q9C4M4 (EMBL:AB033996) (407 aa) fasta scores: E(): 1.2e-07, 28.43% id in 211 aa, and to Bacteroides thetaiotaomicron putative aspartate aminotransferase BT1077 SWALL:AAO76184 (EMBL:AE016930) (438 aa) fasta scores: E(): 2.9e-157, 90.41% id in 438 aa, and to Streptococcus agalactiae hypothetical protein gbs0571 SWALL:Q8E6J2 (EMBL:AL766846) (397 aa) fasta scores: E(): 1.9e-10, 27.86% id in 244 aa; putative amino acid transferase 2466086 3285579 BF9343_2024 Bacteroides fragilis NCTC 9343 putative amino acid transferase YP_211735.1 2464770 R 272559 CDS YP_211736.1 60681592 3287631 2466550..2467800 1 NC_003228.3 Similar to Bacteroides fragilis transposase BipH SWALL:Q9ZI85 (EMBL:AF038866) (410 aa) fasta scores: E(): 3.3e-46, 37.05% id in 394 aa, and to Bacteroides thetaiotaomicron transposase BT4739 SWALL:AAO79844 (EMBL:AE016946) (407 aa) fasta scores: E(): 2.7e-79, 49.5% id in 404 aa, and to Bacteroides thetaiotaomicron transposase BT2576 SWALL:AAO77683 (EMBL:AE016936) (411 aa) fasta scores: E(): 2.1e-69, 44.96% id in 407 aa; putative bacteriophage integrase 2467800 3287631 BF9343_2025 Bacteroides fragilis NCTC 9343 putative bacteriophage integrase YP_211736.1 2466550 D 272559 CDS YP_211737.1 60681593 3285593 complement(2467809..2468657) 1 NC_003228.3 Similar to Escherichia coli RNA-directed DNA polymerase from retron Ec86 SWALL:RT86_ECOLI (SWALL:P23070) (320 aa) fasta scores: E(): 1.3e-11, 30.23% id in 215 aa, and to Methanosarcina acetivorans hypothetical protein Ma2102 SWALL:Q8TP23 (EMBL:AE010896) (563 aa) fasta scores: E(): 1e-20, 32.72% id in 275 aa, and to Staphylococcus aureus hypothetical protein sav2209 or sa2010 SWALL:Q99S60 (EMBL:AP003364) (338 aa) fasta scores: E(): 1.3e-17, 32.75% id in 232 aa; putative RNA-directed DNA polymerase from retron 2468657 3285593 BF9343_2026 Bacteroides fragilis NCTC 9343 putative RNA-directed DNA polymerase from retron YP_211737.1 2467809 R 272559 CDS YP_211738.1 60681594 3285590 complement(2468681..2468962) 1 NC_003228.3 no significant database matches; hypothetical protein 2468962 3285590 BF9343_2027 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211738.1 2468681 R 272559 CDS YP_211739.1 60681595 3285591 complement(2469501..2469794) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2336 SWALL:Q8A5A3 (EMBL:AE016935) (97 aa) fasta scores: E(): 7.9e-21, 65.93% id in 91 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1930 SWALL:Q8A6F4 (EMBL:AE016934) (97 aa) fasta scores: E(): 1.6e-14, 51.61% id in 93 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2468 SWALL:Q8A4X9 (EMBL:AE016936) (97 aa) fasta scores: E(): 4e-11, 43.61% id in 94 aa; possible DNA-binding protein 2469794 3285591 BF9343_2028 Bacteroides fragilis NCTC 9343 possible DNA-binding protein YP_211739.1 2469501 R 272559 CDS YP_211740.1 60681596 3285588 complement(2469854..2470156) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2337 SWALL:Q8A5A2 (EMBL:AE016935) (97 aa) fasta scores: E(): 1.8e-14, 53.4% id in 88 aa; hypothetical protein 2470156 3285588 BF9343_2029 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211740.1 2469854 R 272559 CDS YP_211741.1 60681597 3285589 complement(2470167..2470472) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1129 SWALL:Q8A8N8 (EMBL:AE016930) (103 aa) fasta scores: E(): 4.2e-10, 41.86% id in 86 aa, and to C-terminus of Bacteroides thetaiotaomicron hypothetical 18.3 kDa protein SWALL:Q93L46 (EMBL:AJ311171) (161 aa) fasta scores: E(): 7.9e-09, 40.69% id in 86 aa, and to C-terminus of Bacteroides thetaiotaomicron hypothetical protein SWALL:Q8G9E5 (EMBL:AJ431573) (258 aa) fasta scores: E(): 1.2e-08, 40.69% id in 86 aa; hypothetical protein 2470472 3285589 BF9343_2030 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211741.1 2470167 R 272559 CDS YP_211742.1 60681598 3285599 complement(2470469..2470756) 1 NC_003228.3 no significant database matches; hypothetical protein 2470756 3285599 BF9343_2031 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211742.1 2470469 R 272559 CDS YP_211743.1 60681599 3285587 2471247..2471696 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0100 SWALL:Q8ABL0 (EMBL:AE016926) (145 aa) fasta scores: E(): 1.1e-24, 53.1% id in 145 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4016 SWALL:Q8A0K5 (EMBL:AE016943) (140 aa) fasta scores: E(): 1.7e-23, 54.01% id in 137 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2612 SWALL:Q8A4I7 (EMBL:AE016936) (140 aa) fasta scores: E(): 3.7e-20, 46.32% id in 136 aa; hypothetical protein 2471696 3285587 BF9343_2032 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211743.1 2471247 D 272559 CDS YP_211744.1 60681600 3285598 complement(2471763..2472086) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical 14.3 kDa protein SWALL:Q8RM73 (EMBL:AY053505) (119 aa) fasta scores: E(): 1e-22, 64.81% id in 108 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0107 SWALL:Q8ABK3 (EMBL:AE016926) (92 aa) fasta scores: E(): 3e-13, 43.47% id in 92 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2332 SWALL:Q8A5A7 (EMBL:AE016935) (117 aa) fasta scores: E(): 1.5e-10, 36.19% id in 105 aa; hypothetical protein 2472086 3285598 BF9343_2033 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211744.1 2471763 R 272559 CDS YP_211745.1 60681601 3285600 complement(2472216..2472551) 1 NC_003228.3 no significant database matches; hypothetical protein 2472551 3285600 BF9343_2034 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211745.1 2472216 R 272559 CDS YP_211746.1 60681602 3285597 complement(2472589..2472828) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical 9.6 kDa protein SWALL:Q8RM74 (EMBL:AY053505) (79 aa) fasta scores: E(): 6.5e-23, 83.33% id in 78 aa; hypothetical protein 2472828 3285597 BF9343_2035 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211746.1 2472589 R 272559 CDS YP_211747.1 60681603 3285595 complement(2472886..2473887) 1 NC_003228.3 Similar to Rhizobium loti oxidoreductase, aldo/keto reductase family mlr5051 SWALL:Q98CQ3 (EMBL:AP003005) (332 aa) fasta scores: E(): 4.4e-56, 51.19% id in 334 aa, and to Pseudomonas aeruginosa probable oxidoreductase pa2535 SWALL:Q9I0U9 (EMBL:AE004681) (331 aa) fasta scores: E(): 6e-55, 48.35% id in 335 aa, and to Deinococcus radiodurans aldo/keto reductase dr2261 SWALL:Q9RS66 (EMBL:AE002058) (327 aa) fasta scores: E(): 7.8e-55, 51.37% id in 327 aa; putative aldo/keto reductase 2473887 3285595 BF9343_2036 Bacteroides fragilis NCTC 9343 putative aldo/keto reductase YP_211747.1 2472886 R 272559 CDS YP_211748.1 60681604 3285596 complement(2473956..2474882) 1 NC_003228.3 Similar to Rhizobium leguminosarum transcriptional regulator PobR SWALL:Q52799 (EMBL:U40388) (296 aa) fasta scores: E(): 5.9e-11, 25.67% id in 261 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa4120 SWALL:Q9HWR1 (EMBL:AE004828) (303 aa) fasta scores: E(): 6.1e-11, 24.13% id in 290 aa, and to Xanthomonas campestris transcriptional regulator XCC3932 SWALL:Q8P3Y5 (EMBL:AE012514) (317 aa) fasta scores: E(): 5.1e-09, 25.76% id in 295 aa; putative AraC family transcriptional regulator 2474882 3285596 BF9343_2037 Bacteroides fragilis NCTC 9343 putative AraC family transcriptional regulator YP_211748.1 2473956 R 272559 CDS YP_211749.1 60681605 3285606 complement(2474893..2475978) 1 NC_003228.3 no significant database matches; hypothetical protein 2475978 3285606 BF9343_2038 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211749.1 2474893 R 272559 CDS YP_211750.1 60681606 3285594 2477033..2478013 1 NC_003228.3 Similar to Yersinia pestis putative aldo/keto reductase YPO2806 SWALL:Q8ZCZ6 (EMBL:AJ414153) (329 aa) fasta scores: E(): 1.5e-67, 55.45% id in 330 aa, and to Yersinia pestis putative oxidoreductase Y1124 SWALL:Q8D137 (EMBL:AE013715) (330 aa) fasta scores: E(): 1.5e-67, 55.45% id in 330 aa, and to Escherichia coli O6 putative aldo/keto reductase c0413 SWALL:Q8FKK5 (EMBL:AE016756) (329 aa) fasta scores: E(): 1.7e-67, 54.84% id in 330 aa; putative aldo/keto reductase 2478013 3285594 BF9343_2039 Bacteroides fragilis NCTC 9343 putative aldo/keto reductase YP_211750.1 2477033 D 272559 CDS YP_211751.1 60681607 3285607 2478063..2479013 1 NC_003228.3 Similar to Desulfovibrio gigas flavoredoxin flr SWALL:FLR_DESGI (SWALL:Q9KIT1) (194 aa) fasta scores: E(): 4e-08, 26.06% id in 188 aa, and to Methanosarcina mazei putative NADPH-flavin oxidoreductase MM0946 SWALL:Q8PYB7 (EMBL:AE013321) (222 aa) fasta scores: E(): 4.9e-18, 38.79% id in 183 aa, and to Methanosarcina acetivorans flavoredoxin flr or ma3965 SWALL:Q8TJ24 (EMBL:AE011108) (202 aa) fasta scores: E(): 7.1e-17, 38.46% id in 182 aa. Possible alternative start site at codon 17; putative flavoredoxin 2479013 3285607 BF9343_2040 Bacteroides fragilis NCTC 9343 putative flavoredoxin YP_211751.1 2478063 D 272559 CDS YP_211752.1 60681608 3285605 2479109..2479960 1 NC_003228.3 Similar to Trypanosoma cruzi aldo/keto reductase PgfS SWALL:Q965C7 (EMBL:AF262056) (274 aa) fasta scores: E(): 9.6e-45, 48.62% id in 255 aa, and to Streptococcus mutans putative oxidoreductase, aldo/keto reductase family SMU.678 SWALL:Q8DV38 (EMBL:AE014911) (280 aa) fasta scores: E(): 2.7e-61, 56.15% id in 276 aa, and to Escherichia coli O6 2,5-diketo-D-gluconic acid reductase A c0414 SWALL:Q8FKK4 (EMBL:AE016756) (283 aa) fasta scores: E(): 6.9e-60, 56.2% id in 274 aa; putative aldo/keto reductase 2479960 3285605 BF9343_2041 Bacteroides fragilis NCTC 9343 putative aldo/keto reductase YP_211752.1 2479109 D 272559 CDS YP_211753.1 60681609 3285603 complement(2480122..2480307) 1 NC_003228.3 no significant database matches; hypothetical protein 2480307 3285603 BF9343_2042 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211753.1 2480122 R 272559 CDS YP_211754.1 60681610 3285602 2481654..2482520 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1399 SWALL:Q8A7X5 (EMBL:AE016931) (287 aa) fasta scores: E(): 7.4e-78, 62.58% id in 286 aa, and to Lactobacillus plantarum hypothetical protein LP_2889 SWALL:Q88TP2 (EMBL:AL935260) (288 aa) fasta scores: E(): 4.2e-43, 41.41% id in 268 aa; hypothetical protein 2482520 3285602 BF9343_2044 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211754.1 2481654 D 272559 CDS YP_211755.1 60681611 3285601 2482540..2483973 1 NC_003228.3 Similar to Wolinella succinogenes Na+-driven multidrug efflux protein ws1674 SWALL:CAE10702 (EMBL:BX571661) (452 aa) fasta scores: E(): 9.7e-12, 24.89% id in 454 aa, and to Selenomonas ruminantium hypothetical protein NorM SWALL:Q84IF1 (EMBL:AB100500) (473 aa) fasta scores: E(): 4.3e-81, 49.45% id in 455 aa, and to Clostridium acetobutylicum probable cation efflux pump CAC3444 SWALL:Q97DM8 (EMBL:AE007842) (462 aa) fasta scores: E(): 2e-41, 31.99% id in 447 aa; putative cation efflux protein 2483973 3285601 BF9343_2045 Bacteroides fragilis NCTC 9343 putative cation efflux protein YP_211755.1 2482540 D 272559 CDS YP_211756.1 60681612 3287458 2483977..2485140 1 NC_003228.3 Similar to Treponema denticola hemolysin Hly SWALL:Q56257 (EMBL:U30249) (399 aa) fasta scores: E(): 1.1e-54, 38.32% id in 394 aa, and to Bacteroides thetaiotaomicron putative aminotransferase B BT1398 SWALL:Q8A7X6 (EMBL:AE016931) (385 aa) fasta scores: E(): 4.4e-112, 66.75% id in 385 aa, and to Bacillus thuringiensis putative class-II aminotransferase pBT097 SWALL:Q8KNS9 (EMBL:AL731825) (387 aa) fasta scores: E(): 1.1e-72, 43.55% id in 388 aa; putative aminotransferase 2485140 3287458 BF9343_2046 Bacteroides fragilis NCTC 9343 putative aminotransferase YP_211756.1 2483977 D 272559 CDS YP_211757.1 60681613 3285107 2485260..2486204 1 NC_003228.3 Similar to Anabaena sp. hypothetical protein ALL1225 SWALL:Q8YXI8 (EMBL:AP003585) (315 aa) fasta scores: E(): 1.1e-26, 34.98% id in 303 aa, and to Synechocystis sp. auxin-induced protein SLR0545 SWALL:Q55493 (EMBL:D64006) (314 aa) fasta scores: E(): 9e-24, 34.3% id in 309 aa, and to Oryza sativa putative oxidoreductase oj1351_c05.25 SWALL:Q8H4J8 (EMBL:AP004010) (370 aa) fasta scores: E(): 1.5e-22, 33.22% id in 307 aa; putative aldo/keto reductase 2486204 3285107 BF9343_2047 Bacteroides fragilis NCTC 9343 putative aldo/keto reductase YP_211757.1 2485260 D 272559 CDS YP_211758.1 60681614 3285362 2486215..2487228 1 NC_003228.3 Similar to Pseudomonas paucimobilis 5-carboxyvanillic acid decarboxylse LigW2 SWALL:Q84IP8 (EMBL:AB089690) (350 aa) fasta scores: E(): 1.7e-11, 26.78% id in 295 aa, and to Lactobacillus plantarum metal-dependent hydrolase Lp_2961 SWALL:Q88TJ2 (EMBL:AL935260) (307 aa) fasta scores: E(): 6.5e-27, 32.79% id in 311 aa, and to Bradyrhizobium japonicum BLL2743 protein SWALL:Q89RM0 (EMBL:AP005945) (364 aa) fasta scores: E(): 7.3e-23, 33.13% id in 335 aa; putative amidohydrolase 2487228 3285362 BF9343_2048 Bacteroides fragilis NCTC 9343 putative amidohydrolase YP_211758.1 2486215 D 272559 CDS YP_211759.1 60681615 3285112 2487231..2488085 1 NC_003228.3 Similar to Comamonas testosteroni 3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase SWALL:Q9ZFY9 (EMBL:AF092031) (257 aa) fasta scores: E(): 4.6e-07, 27.95% id in 254 aa, and to Lactobacillus plantarum short-chain dehydrogenase/oxidoreductase Lp_2874 SWALL:Q88TQ3 (EMBL:AL935260) (285 aa) fasta scores: E(): 4.4e-53, 59.92% id in 272 aa, and to Ralstonia solanacearum putative oxidoreductase protein RSC0215 or RS00647 SWALL:Q8Y2W7 (EMBL:AL646058) (275 aa) fasta scores: E(): 1.4e-52, 56.45% id in 271 aa; putative short-chain dehydrogenase 2488085 3285112 BF9343_2049 Bacteroides fragilis NCTC 9343 putative short-chain dehydrogenase YP_211759.1 2487231 D 272559 CDS YP_211760.1 60681616 3285284 2488232..2489044 1 NC_003228.3 Similar to Pseudomonas aeruginosa exoenzyme S synthesis regulatory protein ExsA or pa1713 SWALL:EXSA_PSEAE (SWALL:P26993) (278 aa) fasta scores: E(): 9.8e-09, 22.63% id in 243 aa, and to Chromobacterium violaceum ATCC 12472 probable transcriptional regulatory protein cv0679 SWALL:AAQ58355 (EMBL:AE016912) (295 aa) fasta scores: E(): 5.9e-11, 26.48% id in 253 aa; putative AraC family transcriptional regulatory protein 2489044 3285284 BF9343_2050 Bacteroides fragilis NCTC 9343 putative AraC family transcriptional regulatory protein YP_211760.1 2488232 D 272559 CDS YP_211761.1 60681617 3285288 2489175..2490008 1 NC_003228.3 Similar to Mycoplasma penetrans hypothetical protein mype1860 SWALL:Q8EWL7 (EMBL:AP004170) (247 aa) fasta scores: E(): 1.3e-55, 56.57% id in 251 aa; possible carboxymuconolactone decarboxylase 2490008 3285288 BF9343_2051 Bacteroides fragilis NCTC 9343 possible carboxymuconolactone decarboxylase YP_211761.1 2489175 D 272559 CDS YP_211762.1 60681618 3285331 2490010..2490582 1 NC_003228.3 Similar to Helicobacter hepaticus hypothetical protein hh1031 SWALL:AAP77628 (EMBL:AE017147) (157 aa) fasta scores: E(): 4.5e-22, 41.72% id in 151 aa, and to Mycoplasma penetrans conserved hypothetical protein mype6770 SWALL:Q8EV89 (EMBL:AP004172) (159 aa) fasta scores: E(): 2.9e-18, 39.18% id in 148 aa. Possible alternative start site at codon 10; hypothetical protein 2490582 3285331 BF9343_2052 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211762.1 2490010 D 272559 CDS YP_211763.1 60681619 3285608 2490594..2490860 1 NC_003228.3 no significant database matches; hypothetical protein 2490860 3285608 BF9343_2053 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211763.1 2490594 D 272559 CDS YP_211764.1 60681620 3285315 2490862..2491239 1 NC_003228.3 Similar to Methanosarcina acetivorans serine O-acetyltransferase Ma1032 SWALL:Q8TRX9 (EMBL:AE010769) (174 aa) fasta scores: E(): 9e-06, 44.82% id in 58 aa, and to Methanosarcina acetivorans acetyltransferase Ma3713 SWALL:Q8TJR5 (EMBL:AE011083) (182 aa) fasta scores: E(): 1.5e-05, 46.55% id in 58 aa; putative acetyltransferase 2491239 3285315 BF9343_2054 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_211764.1 2490862 D 272559 CDS YP_211765.1 60681621 3285439 2491244..2492308 1 NC_003228.3 Similar to Xylella fastidiosa outer membrane protein xf1739 SWALL:Q9PCN9 (EMBL:AE003997) (385 aa) fasta scores: E(): 1.9e-56, 43.39% id in 348 aa, and to Helicobacter hepaticus hypothetical protein hh0934 SWALL:AAP77531 (EMBL:AE017146) (378 aa) fasta scores: E(): 4.1e-42, 38.88% id in 306 aa, and to Bacillus halodurans unknown BH2089 SWALL:Q9Z9R4 (EMBL:AB013367) (370 aa) fasta scores: E(): 6e-40, 35.79% id in 366 aa; putative outer membrane protein 2492308 3285439 BF9343_2055 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_211765.1 2491244 D 272559 CDS YP_211766.1 60681622 3285469 2492935..2493345 1 NC_003228.3 no significant database matches; hypothetical protein 2493345 3285469 BF9343_2056 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211766.1 2492935 D 272559 CDS YP_211767.1 60681623 3285367 2493621..2494373 1 NC_003228.3 Similar to Pseudomonas paucimobilis 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinC SWALL:LINC_PSEPA (SWALL:P50197) (250 aa) fasta scores: E(): 1e-32, 41.43% id in 251 aa, and to Bradyrhizobium japonicum short chain dehydrogenase BLL4596 SWALL:Q89LE8 (EMBL:AP005951) (254 aa) fasta scores: E(): 1.5e-44, 51.23% id in 244 aa, and to Xylella fastidiosa 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase xf1726 SWALL:Q9PCQ2 (EMBL:AE003996) (255 aa) fasta scores: E(): 2.3e-41, 50.61% id in 245 aa; putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase 2494373 3285367 BF9343_2057 Bacteroides fragilis NCTC 9343 putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase YP_211767.1 2493621 D 272559 CDS YP_211768.1 60681624 3285388 2494417..2495562 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron aldo/keto reductase BT1115 SWALL:Q8A8Q2 (EMBL:AE016930) (384 aa) fasta scores: E(): 2.9e-92, 61.45% id in 384 aa, and to Bradyrhizobium japonicum aldo-keto reductase BLL4597 SWALL:Q89LE7 (EMBL:AP005951) (337 aa) fasta scores: E(): 2.5e-60, 50.61% id in 324 aa, and to Thermotoga maritima oxidoreductase, aldo/keto reductase family TM1006 SWALL:Q9X0A1 (EMBL:AE001762) (333 aa) fasta scores: E(): 4.4e-58, 47.67% id in 323 aa; putative aldo/keto reductase 2495562 3285388 BF9343_2058 Bacteroides fragilis NCTC 9343 putative aldo/keto reductase YP_211768.1 2494417 D 272559 CDS YP_211769.1 60681625 3285431 2495657..2496334 1 NC_003228.3 Similar to Rhizobium etli hypothetical protein Yp075 SWALL:Q8KKW6 (EMBL:U80928) (241 aa) fasta scores: E(): 3.1e-20, 35.06% id in 231 aa, and to Bradyrhizobium japonicum Blr1283 protein SWALL:Q89UX6 (EMBL:AP005939) (236 aa) fasta scores: E(): 3.4e-17, 32.18% id in 233 aa, and to Rhizobium loti probable riboflavin-specific deaminase mlr2151 SWALL:Q98J16 (EMBL:AP002999) (232 aa) fasta scores: E(): 2e-12, 29.61% id in 233 aa; putative RibD-family protein 2496334 3285431 BF9343_2059 Bacteroides fragilis NCTC 9343 putative RibD-family protein YP_211769.1 2495657 D 272559 CDS YP_211770.1 60681626 3285464 2496342..2497412 1 NC_003228.3 Similar to Helicobacter hepaticus hypothetical protein Hh1033 SWALL:AAP77630 (EMBL:AE017147) (345 aa) fasta scores: E(): 3.7e-75, 63.43% id in 320 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2218 SWALL:YM18_PSEAE (SWALL:Q01609) (371 aa) fasta scores: E(): 7.5e-70, 58.85% id in 333 aa, and to Xylella fastidiosa hypothetical protein Xf1750 SWALL:Q9PCM8 (EMBL:AE003998) (378 aa) fasta scores: E(): 3.1e-68, 59.06% id in 320 aa; hypothetical protein 2497412 3285464 BF9343_2060 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211770.1 2496342 D 272559 CDS YP_211771.1 60681627 3287526 2497489..2498724 1 NC_003228.3 Similar to Bacillus halodurans hypothetical protein BH3693 SWALL:Q9K6N5 (EMBL:AP001519) (405 aa) fasta scores: E(): 9.3e-33, 31.17% id in 401 aa, and to Xanthomonas axonopodis transport protein YxaH or XAC2752 SWALL:Q8PIZ3 (EMBL:AE011915) (415 aa) fasta scores: E(): 1.1e-32, 34.39% id in 410 aa, and to Xylella fastidiosa transport protein YxaH or PD1520 SWALL:Q87BD6 (EMBL:AE012558) (416 aa) fasta scores: E(): 2.3e-30, 33.88% id in 422 aa; putative transmembrane protein 2498724 3287526 BF9343_2061 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_211771.1 2497489 D 272559 CDS YP_211772.1 60681628 3285099 2498764..2499780 1 NC_003228.3 Similar to Escherichia coli O6 putative aldo/keto reductase c0413 SWALL:Q8FKK5 (EMBL:AE016756) (329 aa) fasta scores: E(): 3.6e-48, 45.67% id in 335 aa, and to Yersinia pestis putative aldo/keto reductase YPO2806 SWALL:Q8ZCZ6 (EMBL:AJ414153) (329 aa) fasta scores: E(): 3.4e-47, 46.74% id in 323 aa, and to Yersinia pestis putative oxidoreductase Y1124 SWALL:Q8D137 (EMBL:AE013715) (330 aa) fasta scores: E(): 3.5e-47, 46.74% id in 323 aa; putative aldo/keto reductase 2499780 3285099 BF9343_2062 Bacteroides fragilis NCTC 9343 putative aldo/keto reductase YP_211772.1 2498764 D 272559 CDS YP_211773.1 60681629 3285372 complement(2500319..2501266) 1 NC_003228.3 Similar to Bacteroides fragilis transposase for insertion sequence element IS4351 SWALL:TRA4_BACFR (SWALL:P37247) (326 aa) fasta scores: E(): 6.7e-44, 45% id in 320 aa, to Neisseria meningitidis putative transposase for IS1655 NMA1486 and NMA1481 SWALL:Q9JS36 (EMBL:AL162756) (321 aa) fasta scores: E(): 3.7e-36, 39.55% id in 316 aa, and to Alcaligenes eutrophus transposase for insertion sequence element IS1086 SWALL:TRA8_ALCEU (SWALL:P37248) (339 aa) fasta scores: E(): 3.3e-20, 33.33% id in 327 aa; putative IS element 2501266 3285372 BF9343_2063 Bacteroides fragilis NCTC 9343 putative IS element YP_211773.1 2500319 R 272559 CDS YP_211774.1 60681630 3285304 2501873..2502358 1 NC_003228.3 hypothetical membrane protein 2502358 3285304 BF9343_2064 Bacteroides fragilis NCTC 9343 hypothetical membrane protein YP_211774.1 2501873 D 272559 CDS YP_211775.1 60681631 3285403 2502687..2502860 1 NC_003228.3 hypothetical protein 2502860 3285403 BF9343_2065 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211775.1 2502687 D 272559 CDS YP_211776.1 60681632 3287572 2502866..2504074 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron cation efflux system protein BT2038 SWALL:AAO77145 (EMBL:AE016934) (423 aa) fasta scores: E(): 1e-71, 51.05% id in 425 aa, and to Alcaligenes xylosoxydans xylosoxydans nickel-cobalt-cadmium resistance protein NccB SWALL:NCCB_ALCXX (SWALL:Q44585) (397 aa) fasta scores: E(): 2.4e-09, 25% id in 328 aa; putative lipoprotein 2504074 3287572 BF9343_2066 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211776.1 2502866 D 272559 CDS YP_211777.1 60681633 3285150 2504093..2507206 1 NC_003228.3 Similar to Escherichia coli putative cation efflux system protein CusA or B0575 SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 2.9e-82, 31.91% id in 1059 aa, and to Bacteroides thetaiotaomicron cation efflux system protein, AcrB/AcrD/AcrF family protein BT2039 SWALL:AAO77146 (EMBL:AE016934) (1042 aa) fasta scores: E(): 0, 72.44% id in 1027 aa; putative cation transport related membrane protein 2507206 3285150 BF9343_2067 Bacteroides fragilis NCTC 9343 putative cation transport related membrane protein YP_211777.1 2504093 D 272559 CDS YP_211778.1 60681634 3285308 2507208..2508383 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2040 SWALL:AAO77147 (EMBL:AE016934) (397 aa) fasta scores: E(): 2e-35, 33.5% id in 400 aa, and low similarity to Pseudomonas putida cobalt/zinc/cadmium efflux rnd transporter, outer membrane protein, CzcC family PP0045 SWALL:AAN65679 (EMBL:AE016774) (423 aa) fasta scores: E(): 1.5e-06, 21.28% id in 404 aa; hypothetical protein 2508383 3285308 BF9343_2068 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211778.1 2507208 D 272559 CDS YP_211779.1 60681635 3285505 2508395..2508631 1 NC_003228.3 hypothetical protein 2508631 3285505 BF9343_2069 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211779.1 2508395 D 272559 CDS YP_211780.1 60681636 3285281 complement(2508827..2510503) 1 NC_003228.3 putative lipoprotein 2510503 3285281 BF9343_2070 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211780.1 2508827 R 272559 CDS YP_211781.1 60681637 3285495 complement(2510515..2511249) 1 NC_003228.3 hypothetical protein 2511249 3285495 BF9343_2071 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211781.1 2510515 R 272559 CDS YP_211782.1 60681638 3285286 complement(2511443..2511592) 1 NC_003228.3 no significant database matches; hypothetical protein 2511592 3285286 BF9343_2072 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211782.1 2511443 R 272559 CDS YP_211783.1 60681639 3285248 2511984..2514752 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3977 SWALL:AAO79082 (EMBL:AE016943) (937 aa) fasta scores: E(): 2.3e-27, 27.81% id in 949 aa; hypothetical protein 2514752 3285248 BF9343_2073 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211783.1 2511984 D 272559 CDS YP_211784.1 60681640 3285234 2514866..2516284 1 NC_003228.3 hypothetical protein 2516284 3285234 BF9343_2074 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211784.1 2514866 D 272559 CDS YP_211785.1 60681641 3285368 2516326..2516829 1 NC_003228.3 hypothetical protein 2516829 3285368 BF9343_2075 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211785.1 2516326 D 272559 CDS YP_211786.1 60681642 3285502 2517125..2517772 1 NC_003228.3 putative lipoprotein 2517772 3285502 BF9343_2076 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211786.1 2517125 D 272559 CDS YP_211787.1 60681643 3285116 2517809..2520166 1 NC_003228.3 Similar to Porphyromonas gingivalis hypothetical TonB-linked outer membrane receptor PG35 SWALL:Q9KIB2 (EMBL:AF237556) (833 aa) fasta scores: E(): 5.1e-14, 23.77% id in 778 aa, and to Leptospira interrogans hemin receptor LA3149 SWALL:Q8F1I6 (EMBL:AE011477) (777 aa) fasta scores: E(): 9.5e-11, 21.1% id in 796 aa; putative TonB-related exported protein 2520166 3285116 BF9343_2077 Bacteroides fragilis NCTC 9343 putative TonB-related exported protein YP_211787.1 2517809 D 272559 CDS YP_211788.1 60681644 3285233 2520163..2520879 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical 23.1 kDa protein SWALL:Q9XDI9 (EMBL:AF048749) (214 aa) fasta scores: E(): 9.1e-05, 33.47% id in 239 aa; conserved hypothetical lipoprotein 2520879 3285233 BF9343_2078 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_211788.1 2520163 D 272559 CDS YP_211789.1 60681645 3285472 2520970..2521890 1 NC_003228.3 hypothetical protein 2521890 3285472 BF9343_2079 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211789.1 2520970 D 272559 CDS YP_211790.1 60681646 3285456 2521922..2522791 1 NC_003228.3 putative exported membrane protein 2522791 3285456 BF9343_2080 Bacteroides fragilis NCTC 9343 putative exported membrane protein YP_211790.1 2521922 D 272559 CDS YP_211791.1 60681647 3285484 complement(2522898..2523218) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0779 SWALL:AAO75886 (EMBL:AE016929) (107 aa) fasta scores: E(): 1.6e-24, 77.14% id in 105 aa; hypothetical protein 2523218 3285484 BF9343_2081 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211791.1 2522898 R 272559 CDS YP_211792.1 60681648 3285411 2523545..2524156 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT0507 SWALL:AAO75614 (EMBL:AE016928) (202 aa) fasta scores: E(): 6.5e-30, 42.85% id in 203 aa, and to Listeria innocua putative transcriptional regulator SWALL:Q9EUW7 (EMBL:AJ249398) (246 aa) fasta scores: E(): 1.4e-06, 28.14% id in 199 aa; putative TetR-family transcriptional regulator 2524156 3285411 BF9343_2082 Bacteroides fragilis NCTC 9343 putative TetR-family transcriptional regulator YP_211792.1 2523545 D 272559 CDS YP_211793.1 60681649 3285471 2524306..2525124 1 NC_003228.3 Similar to Streptomyces glaucescens tetracenomycin polyketide synthesis O-methyltransferase TcmP SWALL:TCMP_STRGA (SWALL:P39887) (270 aa) fasta scores: E(): 3.8e-17, 31.57% id in 228 aa, and to Streptococcus agalactiae tetracenomycin polyketide synthesis O-methyltransferase TcmP, putative SAG1502 SWALL:Q8DYH8 (EMBL:AE014260) (268 aa) fasta scores: E(): 8.5e-29, 37.06% id in 259 aa; putative polyketide synthesis O-methyltransferase 2525124 3285471 BF9343_2083 Bacteroides fragilis NCTC 9343 putative polyketide synthesis O-methyltransferase YP_211793.1 2524306 D 272559 CDS YP_211794.1 60681650 3285114 2525140..2526951 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT0508 SWALL:AAO75615 (EMBL:AE016928) (609 aa) fasta scores: E(): 2.9e-172, 74.45% id in 599 aa, and to Escherichia coli O6 putative inner membrane ABC-transporter C2422 SWALL:Q8FGF5 (EMBL:AE016762) (600 aa) fasta scores: E(): 9.4e-61, 37.08% id in 542 aa; putative transport-related membrane protein 2526951 3285114 BF9343_2084 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_211794.1 2525140 D 272559 CDS YP_211795.1 60681651 3285421 2526955..2528685 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter ATP-binding/transmembrane protein BT0509 SWALL:AAO75616 (EMBL:AE016928) (576 aa) fasta scores: E(): 2.9e-172, 77.25% id in 576 aa, and to Clostridium tetani transporter CTC01408 SWALL:AAO35967 (EMBL:AE015941) (514 aa) fasta scores: E(): 1.7e-105, 55.55% id in 504 aa; putative transport-related membrane protein 2528685 3285421 BF9343_2085 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_211795.1 2526955 D 272559 CDS YP_211796.1 60681652 3285184 complement(2528984..2530519) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system histidine kinase BT0994 SWALL:AAO76101 (EMBL:AE016930) (499 aa) fasta scores: E(): 4.3e-72, 42.94% id in 489 aa, and to the C-terminal region of Pseudomonas aeruginosa probable sensor/response regulator hybrid PA4112 SWALL:Q9HWR8 (EMBL:AE004827) (1417 aa) fasta scores: E(): 4.1e-26, 27.52% id in 505 aa; putative two-component regulatory system histidine kinase 2530519 3285184 BF9343_2086 Bacteroides fragilis NCTC 9343 putative two-component regulatory system histidine kinase YP_211796.1 2528984 R 272559 CDS YP_211797.1 60681653 3285461 2530794..2531666 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron AraC-type transcription regulator BT1235 SWALL:AAO76342 (EMBL:AE016931) (300 aa) fasta scores: E(): 3.5e-24, 26.2% id in 290 aa, and to Xanthomonas campestris transcriptional regulator XCC3932 SWALL:Q8P3Y5 (EMBL:AE012514) (317 aa) fasta scores: E(): 7.3e-07, 26.47% id in 170 aa; putative AraC-family transcriptional regulator 2531666 3285461 BF9343_2087 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_211797.1 2530794 D 272559 CDS YP_211798.1 60681654 3285296 complement(2531710..2532147) 1 NC_003228.3 Low similarity to Clostridium acetobutylicum hypothetical protein CAC1073 SWALL:Q97K48 (EMBL:AE007622) (152 aa) fasta scores: E(): 5.3e-06, 28.46% id in 137 aa; hypothetical protein 2532147 3285296 BF9343_2088 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211798.1 2531710 R 272559 CDS YP_211799.1 60681655 3287533 2532304..2532771 1 NC_003228.3 Similar to Pseudomonas putida transcriptional regulator BkdR, putative PP5188 SWALL:AAN70753 (EMBL:AE016793) (156 aa) fasta scores: E(): 2.8e-19, 41.83% id in 153 aa, and to Pseudomonas putida bkd operon transcriptional regulator BkdR SWALL:BKDR_PSEPU (SWALL:P42179) (161 aa) fasta scores: E(): 2.1e-15, 36.42% id in 151 aa; putative AsnC-family transcriptional regulator 2532771 3287533 BF9343_2089 Bacteroides fragilis NCTC 9343 putative AsnC-family transcriptional regulator YP_211799.1 2532304 D 272559 CDS YP_211800.1 60681656 3285458 complement(2532813..2533136) 1 NC_003228.3 hypothetical protein 2533136 3285458 BF9343_2090 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211800.1 2532813 R 272559 CDS YP_211801.1 60681657 3285145 complement(2533156..2534004) 1 NC_003228.3 Similar to Yersinia pestis thermoregulatory protein LcrF or YPCD1.49 or Y5029 or Y0032 SWALL:LCRF_YERPE (SWALL:P28808) (271 aa) fasta scores: E(): 1.3e-07, 26.07% id in 257 aa, and to Bacteroides thetaiotaomicron transcription regulator BTt2320 SWALL:AAO77427 (EMBL:AE016935) (291 aa) fasta scores: E(): 1.7e-26, 32.38% id in 281 aa; putative AraC-family transcriptional regulator 2534004 3285145 BF9343_2091 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_211801.1 2533156 R 272559 CDS YP_211802.1 60681658 3285250 2534205..2534600 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1071 SWALL:AAO76178 (EMBL:AE016930) (135 aa) fasta scores: E(): 1.9e-24, 55.14% id in 136 aa; hypothetical protein 2534600 3285250 BF9343_2092 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211802.1 2534205 D 272559 CDS YP_211803.1 60681659 3285224 2534597..2535901 1 NC_003228.3 Similar to Escherichia coli hypothetical protein YbdN or B0602 SWALL:YBDN_ECOLI (SWALL:P77216) (406 aa) fasta scores: E(): 1.5e-38, 33.09% id in 420 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1070 SWALL:AAO76177 (EMBL:AE016930) (434 aa) fasta scores: E(): 2.5e-168, 85.91% id in 433 aa; hypothetical protein 2535901 3285224 BF9343_2093 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211803.1 2534597 D 272559 CDS YP_211804.1 60681660 3287326 2535898..2536443 1 NC_003228.3 Similar to Escherichia coli hypothetical protein YbdM or B0601 SWALL:YBDM_ECOLI (SWALL:P77174) (209 aa) fasta scores: E(): 5.6e-25, 48.14% id in 162 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative transcriptional regulator BT1069 SWALL:AAO76176 (EMBL:AE016930) (180 aa) fasta scores: E(): 2.9e-61, 83.7% id in 178 aa; hypothetical protein 2536443 3287326 BF9343_2094 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211804.1 2535898 D 272559 CDS YP_211805.1 60681661 3285301 2536780..2537346 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1066 SWALL:AAO76173 (EMBL:AE016930) (189 aa) fasta scores: E(): 6.4e-39, 55.02% id in 189 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4234 SWALL:AAO79339 (EMBL:AE016944) (189 aa) fasta scores: E(): 8.8e-39, 48.1% id in 185 aa; hypothetical protein 2537346 3285301 BF9343_2095 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211805.1 2536780 D 272559 CDS YP_211806.1 60681662 3285496 2537373..2538824 1 NC_003228.3 Similar to Porphyromonas gingivalis 60kda protein SWALL:O07074 (EMBL:AB004560) (490 aa) fasta scores: E(): 4e-60, 36.56% id in 495 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4233 SWALL:AAO79338 (EMBL:AE016944) (484 aa) fasta scores: E(): 4.4e-51, 33.94% id in 489 aa; hypothetical protein 2538824 3285496 BF9343_2096 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211806.1 2537373 D 272559 CDS YP_211807.1 60681663 3285441 2538866..2540425 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1063 SWALL:AAO76170 (EMBL:AE016930) (566 aa) fasta scores: E(): 4e-05, 23.35% id in 591 aa; putative lipoprotein 2540425 3285441 BF9343_2097 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211807.1 2538866 D 272559 CDS YP_211808.1 60681664 3285381 2540457..2541437 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1062 SWALL:AAO76169 (EMBL:AE016930) (317 aa) fasta scores: E(): 2.8e-29, 36.42% id in 313 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2657 SWALL:AAO77764 (EMBL:AE016936) (338 aa) fasta scores: E(): 3e-17, 29.24% id in 318 aa; hypothetical protein 2541437 3285381 BF9343_2098 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211808.1 2540457 D 272559 CDS YP_211809.1 60681665 3285400 complement(2541552..2542511) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1061 SWALL:AAO76168 (EMBL:AE016930) (319 aa) fasta scores: E(): 2.5e-94, 74.6% id in 319 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1060 SWALL:AAO76167 (EMBL:AE016930) (317 aa) fasta scores: E(): 2.8e-52, 46.37% id in 317 aa; hypothetical protein 2542511 3285400 BF9343_2099 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211809.1 2541552 R 272559 CDS YP_211810.1 60681666 3285199 complement(2542761..2543720) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1060 SWALL:Q8A8V7 (EMBL:AE016930) (317 aa) fasta scores: E(): 3.4e-82, 66.45% id in 316 aa; hypothetical protein 2543720 3285199 BF9343_2100 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211810.1 2542761 R 272559 CDS YP_211811.1 60681667 3285430 2543963..2544289 1 NC_003228.3 hypothetical protein 2544289 3285430 BF9343_2101 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211811.1 2543963 D 272559 CDS YP_211812.1 60681668 3285399 2544430..2545368 1 NC_003228.3 Similar to Pseudomonas aeruginosa similar to NAD dependent epimerase/dehydratase family SWALL:Q8KH68 (EMBL:AF498418) (318 aa) fasta scores: E(): 5.1e-92, 71.24% id in 306 aa, and to Bacteroides thetaiotaomicron putative UDP-glucose 4-epimerase BT1059 SWALL:AAO76166 (EMBL:AE016930) (309 aa) fasta scores: E(): 3.7e-106, 83.71% id in 307 aa; putative NAD dependent epimerase/dehydratase 2545368 3285399 BF9343_2102 Bacteroides fragilis NCTC 9343 putative NAD dependent epimerase/dehydratase YP_211812.1 2544430 D 272559 CDS YP_211813.1 60681669 3285504 2545403..2546530 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1058 SWALL:AAO76165 (EMBL:AE016930) (377 aa) fasta scores: E(): 7.3e-114, 85.56% id in 374 aa, and to Synechocystis sp. regulatory components of sensory transduction system SLL1229 SWALL:P74014 (EMBL:D90911) (378 aa) fasta scores: E(): 1.1e-30, 30.76% id in 377 aa; putative two component system histidine kinase/response regulator fusion protein 2546530 3285504 BF9343_2103 Bacteroides fragilis NCTC 9343 putative two component system histidine kinase/response regulator fusion protein YP_211813.1 2545403 D 272559 CDS YP_211814.1 60681670 3285134 complement(2546763..2549636) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1057 SWALL:Q8A8W0 (EMBL:AE016930) (954 aa) fasta scores: E(): 0, 76.74% id in 959 aa; hypothetical protein 2549636 3285134 BF9343_2104 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211814.1 2546763 R 272559 CDS YP_211815.1 60681671 3285101 complement(2549633..2552806) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ATP-dependent helicase BT1054 SWALL:AAO76161 (EMBL:AE016930) (1057 aa) fasta scores: E(): 0, 77.86% id in 1057 aa, and to Lactococcus lactis subunit A of ATP-dependent exonuclease RexA or LL0004 SWALL:Q9CJI9 (EMBL:AE006239) (1203 aa) fasta scores: E(): 6.4e-11, 24.95% id in 1090 aa; putative helicase 2552806 3285101 BF9343_2105 Bacteroides fragilis NCTC 9343 putative helicase YP_211815.1 2549633 R 272559 CDS YP_211816.1 60681672 3285432 complement(2552830..2554407) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron beta-hexosaminidase precursor BT4681 SWALL:AAO79786 (EMBL:AE016946) (536 aa) fasta scores: E(): 1e-162, 72.43% id in 526 aa, and to Xylella fastidiosa beta-hexosaminidase precursor NahA or PD1827 SWALL:AAO29660 (EMBL:AE012560) (812 aa) fasta scores: E(): 5.6e-27, 34.51% id in 510 aa; putative hydrolase exported protein 2554407 3285432 BF9343_2106 Bacteroides fragilis NCTC 9343 putative hydrolase exported protein YP_211816.1 2552830 R 272559 CDS YP_211817.1 60681673 3285548 2554694..2557303 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1551 SWALL:Q8A7H3 (EMBL:AE016932) (876 aa) fasta scores: E(): 0, 78.47% id in 850 aa, and to Anabaena sp. hypothetical protein ALL0432 SWALL:Q8YZM5 (EMBL:AP003582) (926 aa) fasta scores: E(): 2e-17, 24.91% id in 843 aa; hypothetical protein 2557303 3285548 BF9343_2107 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211817.1 2554694 D 272559 CDS YP_211818.1 60681674 3285247 2557432..2560737 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1552 SWALL:AAO76659 (EMBL:AE016932) (1114 aa) fasta scores: E(): 5.9e-186, 58.74% id in 1115 aa, and to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 1.5e-14, 29.65% id in 1143 aa; hypothetical protein 2560737 3285247 BF9343_2108 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211818.1 2557432 D 272559 CDS YP_211819.1 60681675 3285164 2560760..2562091 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1553 SWALL:AAO76660 (EMBL:AE016932) (442 aa) fasta scores: E(): 3.8e-94, 54.6% id in 445 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3280 SWALL:AAO78386 (EMBL:AE016939) (489 aa) fasta scores: E(): 5.6e-08, 28.12% id in 480 aa; putative lipoprotein 2562091 3285164 BF9343_2109 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211819.1 2560760 D 272559 CDS YP_211820.1 60681676 3285402 complement(2562593..2563852) 1 NC_003228.3 Similar on its C-terminal region to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YieM or B3745 or Z5246 or ECS4687 SWALL:YIEM_ECOLI (SWALL:P03818) (427 aa) fasta scores: E(): 4.6e-17, 26.7% id in 352 aa, and to Vibrio cholerae hypothetical protein VCA0762 SWALL:Q9KLI2 (EMBL:AE004404) (481 aa) fasta scores: E(): 6.6e-26, 28.26% id in 368 aa; hypothetical protein 2563852 3285402 BF9343_2110 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211820.1 2562593 R 272559 CDS YP_211821.1 60681677 3285171 complement(2563938..2565512) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ATPase BT0335 SWALL:AAO75442 (EMBL:AE016927) (517 aa) fasta scores: E(): 1.2e-69, 41.53% id in 520 aa, and to Escherichia coli hypothetical protein YieN or B3746 SWALL:YIEN_ECOLI (SWALL:P31473) (498 aa) fasta scores: E(): 2.3e-50, 48.98% id in 296 aa; hypothetical protein 2565512 3285171 BF9343_2111 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211821.1 2563938 R 272559 CDS YP_211822.1 60681678 3285351 2565700..2566482 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0135 SWALL:AAO75242 (EMBL:AE016926) (260 aa) fasta scores: E(): 2.4e-83, 76.92% id in 260 aa, and to Streptomyces coelicolor hypothetical protein SCO1349 or 2SCG61.31c SWALL:Q9K3Y4 (EMBL:AL939108) (251 aa) fasta scores: E(): 4.5e-39, 47.84% id in 232 a. This CDS overlaps 21 nt with the downstream CDS; hypothetical protein 2566482 3285351 BF9343_2112 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211822.1 2565700 D 272559 CDS YP_211823.1 60681679 3285204 2566460..2566843 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0134 SWALL:Q8ABH6 (EMBL:AE016926) (127 aa) fasta scores: E(): 3.9e-28, 55.11% id in 127 aa, and to Streptomyces coelicolor hypothetical protein SCO1348 or 2SCG61.30c SWALL:Q9K3Y5 (EMBL:AL939108) (127 aa) fasta scores: E(): 4.8e-15, 38.09% id in 126 aa. This CDS overlaps 21 nt with the upstream CDS.; hypothetical protein 2566843 3285204 BF9343_2113 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211823.1 2566460 D 272559 CDS YP_211824.1 60681680 3285414 complement(2566849..2568513) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative long-chain-fatty-acid--CoA ligase BT0684 SWALL:AAO75791 (EMBL:AE016928) (554 aa) fasta scores: E(): 2.1e-198, 88.08% id in 554 aa, and to Salmonella typhimurium, and Salmonella typhi long-chain-fatty-acid--CoA ligase FadD or STM1818 or STY1948 or T1059 SWALL:LCFA_SALTY (SWALL:Q8XGG8) (561 aa) fasta scores: E(): 1.1e-13, 24.95% id in 585 aa; putative ligase 2568513 3285414 BF9343_2114 Bacteroides fragilis NCTC 9343 putative ligase YP_211824.1 2566849 R 272559 CDS YP_211825.1 60681681 3287423 complement(2568727..2570199) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative Na+/H+ exchanger BT0685 SWALL:AAO75792 (EMBL:AE016928) (490 aa) fasta scores: E(): 2.4e-165, 88.7% id in 487 aa, and to Escherichia coli putative Na(+)/H(+) exchanger YcgO or B1191 SWALL:YCGO_ECOLI (SWALL:P76007) (578 aa) fasta scores: E(): 5.1e-51, 38.83% id in 479 aa; putative Na+/H+ exchanger 2570199 3287423 BF9343_2115 Bacteroides fragilis NCTC 9343 putative Na+/H+ exchanger YP_211825.1 2568727 R 272559 CDS YP_211826.1 60681682 3285378 2570365..2571552 1 NC_003228.3 Similar to Bacillus caldolyticus uracil permease PyrP SWALL:PYRP_BACCL (SWALL:P41006) (432 aa) fasta scores: E(): 6e-41, 46.44% id in 394 aa, and to Bacteroides thetaiotaomicron putative uracil permease BTt0686 SWALL:AAO75793 (EMBL:AE016928) (394 aa) fasta scores: E(): 9.1e-134, 89.34% id in 394 aa; putative uracil permease 2571552 3285378 BF9343_2116 Bacteroides fragilis NCTC 9343 putative uracil permease YP_211826.1 2570365 D 272559 CDS YP_211827.3 589285996 3289217 complement(2571679..2573310) 1 NC_003228.3 Similar to Escherichia coli hydroxylamine reductase Hcp or B0873 SWALL:HCP_ECOLI (SWALL:P75825) (550 aa) fasta scores: E(): 2.8e-68, 40.03% id in 557 aa, and to Thermoanaerobacter tengcongensis hydroxylamine reductase TTE2772 SWALL:HCP_THETN (SWALL:Q8R6M9) (549 aa) fasta scores: E(): 9e-151, 65.81% id in 550 aa; hydroxylamine reductase 2573310 hcp 3289217 hcp Bacteroides fragilis NCTC 9343 hydroxylamine reductase YP_211827.3 2571679 R 272559 CDS YP_211828.1 60681684 3285436 complement(2573826..2574491) 1 NC_003228.3 Similar to Pseudomonas aeruginosa transcriptional activator protein Anr or PA1544 SWALL:ANR_PSEAE (SWALL:P23926) (244 aa) fasta scores: E(): 1.2e-07, 27.39% id in 219 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri fumarate and nitrate reduction regulatory protein Fnr or NirR or B1334 or C1807 or Z2433 or ECS1915 or SF1836 SWALL:FNR_ECOLI (SWALL:P03019) (250 aa) fasta scores: E(): 1.2e-05, 24.39% id in 205 aa, and to Bacteroides thetaiotaomicron cAMP-binding domain BT0688 SWALL:AAO75795 (EMBL:AE016928) (222 aa) fasta scores: E(): 4.9e-60, 76.6% id in 218 aa, and to; putative regulatory protein 2574491 3285436 BF9343_2118 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_211828.1 2573826 R 272559 CDS YP_211829.1 60681685 3285373 complement(2574607..2575920) 1 NC_003228.3 Similar to Pseudomonas aeruginosa sensor protein PilS or PA4546 SWALL:PILS_PSEAE (SWALL:P33639) (530 aa) fasta scores: E(): 8.3e-13, 25.92% id in 324 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BTt0689 SWALL:AAO75796 (EMBL:AE016928) (438 aa) fasta scores: E(): 7.4e-123, 73.79% id in 435 aa; putative two-component system, sensor kinase 2575920 3285373 BF9343_2119 Bacteroides fragilis NCTC 9343 putative two-component system, sensor kinase YP_211829.1 2574607 R 272559 CDS YP_211830.1 60681686 3285231 complement(2575917..2577257) 1 NC_003228.3 Similar to Escherichia coli transcriptional regulatory protein ZraR or HydG or B4004 SWALL:ZRAR_ECOLI (SWALL:P14375) (441 aa) fasta scores: E(): 9.7e-52, 40.59% id in 441 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT0690 SWALL:AAO75797 (EMBL:AE016928) (447 aa) fasta scores: E(): 1.4e-129, 80.98% id in 447 aa; putative two-component system, response regulator 2577257 3285231 BF9343_2120 Bacteroides fragilis NCTC 9343 putative two-component system, response regulator YP_211830.1 2575917 R 272559 CDS YP_211831.1 60681687 3285120 complement(2577386..2578057) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0691 SWALL:AAO75798 (EMBL:AE016928) (267 aa) fasta scores: E(): 2.6e-67, 68.44% id in 225 aa; hypothetical protein 2578057 3285120 BF9343_2121 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211831.1 2577386 R 272559 CDS YP_211832.1 60681688 3285278 complement(2578071..2578880) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative calcineurin superfamily phosphohydrolase BT0692 SWALL:AAO75799 (EMBL:AE016928) (267 aa) fasta scores: E(): 6e-79, 71.81% id in 259 aa; conserved hypothetical lipoprotein 2578880 3285278 BF9343_2122 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_211832.1 2578071 R 272559 CDS YP_211833.1 60681689 3288438 2579135..2581423 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, permease protein BT0695 SWALL:AAO75802 (EMBL:AE016928) (771 aa) fasta scores: E(): 6.4e-134, 46.44% id in 773 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0693 SWALL:AAO75800 (EMBL:AE016928) (793 aa) fasta scores: E(): 2.8e-133, 44.15% id in 770 aa. Note: Also similar to BF2215 (765 aa) fasta scores: E(): 2e-132, 45.514% identity in 769 aa overlap, to BF2214 (769 aa) fasta scores: E(): 4.8e-126, 45.408% identity in 773 aa overlap, and to BF2212 (770 aa) fasta scores: E(): 2.4e-120, 43.115% identity in 777 aa overlap; putative ABC transport system, membrane protein 2581423 3288438 BF9343_2123 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_211833.1 2579135 D 272559 CDS YP_211834.1 60681690 3285103 2581449..2582123 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, ATP-binding protein BT0694 SWALL:Q8A9X1 (EMBL:AE016928) (224 aa) fasta scores: E(): 4.9e-71, 90.62% id in 224 aa, and to Erwinia chrysanthemi ATPase UntA SWALL:Q8RKC8 (EMBL:AJ438188) (235 aa) fasta scores: E(): 1.7e-40, 52.94% id in 221 aa. Note: Also similar to BF2213 (227 aa) fasta scores: E(): 2.7e-78, 96.018% identity in 226 aa overlap; putative ABC transport system, ATP-binding protein 2582123 3285103 BF9343_2124 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_211834.1 2581449 D 272559 CDS YP_211835.1 60681691 3285485 2582137..2584446 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, permease protein BT0695 SWALL:AAO75802 (EMBL:AE016928) (771 aa) fasta scores: E(): 2.2e-112, 40.97% id in 781 aa, and to Bradyrhizobium japonicum BLL6980 protein SWALL:BAC52245 (EMBL:AP005960) (410 aa) fasta scores: E(): 7.5e-05, 22.35% id in 407 aa. Note: Also similar to BF2215 (765 aa) fasta scores: E(): 2e-103, 40.589% identity in 781 aa overlap, to BF2214 (769 aa) fasta scores: E(): 3.7e-212, 69.661% identity in 768 aa overlap, and to BF2210 (763 aa) fasta scores: E(): 6.3e-119, 43.316% identity in 778 aa overlap; putative ABC transport system, membrane protein 2584446 3285485 BF9343_2125 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_211835.1 2582137 D 272559 CDS YP_211836.1 60681692 3285222 2584456..2585136 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, ATP-binding protein BT0694 SWALL:AAO75801 (EMBL:AE016928) (224 aa) fasta scores: E(): 1.4e-70, 89.73% id in 224 aa, and to Erwinia chrysanthemi ATPase UntA SWALL:Q8RKC8 (EMBL:AJ438188) (235 aa) fasta scores: E(): 9e-41, 53.6% id in 222 aa. Note: Also similar to BF2211 (227 aa) fasta scores: E(): 3.7e-79, 96.018% identity in 226 aa overlap; putative ABC transport system, ATP-binding protein 2585136 3285222 BF9343_2126 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_211836.1 2584456 D 272559 CDS YP_211837.1 60681693 3285293 2585153..2587459 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, permease protein BT0695 SWALL:AAO75802 (EMBL:AE016928) (771 aa) fasta scores: E(): 2.4e-111, 40.82% id in 779 aa, and to Bradyrhizobium japonicum BLL6980 protein SWALL:BAC52245 (EMBL:AP005960) (410 aa) fasta scores: E(): 2.6e-05, 20.59% id in 403 aa. Note: Also similar to BF2215 (765 aa) fasta scores: E(): 2e-108, 42.564% identity in 780 aa overlap, to BF2212 (770 aa) fasta scores: E(): 1e-209, 69.661% identity in 768 aa overlap, and to BF2210 (763 aa) fasta scores: E(): 4.1e-123, 45.408% identity in 773 aa overlap; putative ABC transport system, membrane protein 2587459 3285293 BF9343_2127 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_211837.1 2585153 D 272559 CDS YP_211838.1 60681694 3285146 2587490..2589784 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, permease protein BT0695 SWALL:AAO75802 (EMBL:AE016928) (771 aa) fasta scores: E(): 4.5e-107, 38.61% id in 777 aa, and to Bacteroides thetaiotaomicron putative ABC transporter permease BT0861 SWALL:AAO75968 (EMBL:AE016929) (781 aa) fasta scores: E(): 1.3e-06, 22.16% id in 821 aa. Note: Also similar to BF2210 (763 aa) fasta scores: E(): 7.3e-135, 45.514% identity in 769 aa overlap, to BF2214 (760 aa) fasta scores: E(): 4.4e-113, 42.416% identity in 778 aa overlap, and to BF2212 (770 aa) fasta scores: E(): 1.6e-106, 40.717% identity in 781 aa overlap; putative ABC transport system, membrane protein 2589784 3285146 BF9343_2128 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_211838.1 2587490 D 272559 CDS YP_211839.1 60681695 3285300 complement(2589868..2591232) 1 NC_003228.3 Similar to Clostridium tetani na+ driven multidrug efflux pump MviN or CTC00603 SWALL:AAO35218 (EMBL:AE015938) (456 aa) fasta scores: E(): 3.3e-75, 44.17% id in 446 aa, and to Bacteroides thetaiotaomicron putative membrane protein BT0696 SWALL:AAO75803 (EMBL:AE016928) (456 aa) fasta scores: E(): 2.8e-135, 76.54% id in 452 aa; putative MatE-family transport-related membrane protein 2591232 3285300 BF9343_2129 Bacteroides fragilis NCTC 9343 putative MatE-family transport-related membrane protein YP_211839.1 2589868 R 272559 CDS YP_211840.1 60681696 3285192 2591340..2592002 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative phosphatase/phosphohexomutase BT0697 SWALL:AAO75804 (EMBL:AE016928) (215 aa) fasta scores: E(): 6.5e-53, 65.72% id in 213 aa, and to Chlorobium tepidum hydrolase, haloacid dehalogenase-like family CT0014 SWALL:Q8KGF4 (EMBL:AE012781) (234 aa) fasta scores: E(): 1.2e-08, 26.87% id in 227 aa; putative hydrolase 2592002 3285192 BF9343_2130 Bacteroides fragilis NCTC 9343 putative hydrolase YP_211840.1 2591340 D 272559 CDS YP_211841.1 60681697 3289318 2592074..2593069 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 dihydroorotate dehydrogenase PyrD or B0945 or Z1294 or ECS1029 SWALL:PYRD_ECOLI (SWALL:P05021) (336 aa) fasta scores: E(): 1.1e-17, 34.98% id in 343 aa, and to Bacteroides thetaiotaomicron dihydroorotate dehydrogenase BT1009 SWALL:AAO76116 (EMBL:AE016930) (312 aa) fasta scores: E(): 9.1e-57, 52.56% id in 312 aa; putative dihydroorotate dehydrogenase, catalytic subunit 2593069 pyrD2 3289318 pyrD2 Bacteroides fragilis NCTC 9343 putative dihydroorotate dehydrogenase, catalytic subunit YP_211841.1 2592074 D 272559 CDS YP_211842.1 60681698 3285186 2593066..2593812 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative xylanase BT1087 SWALL:AAO76194 (EMBL:AE016930) (515 aa) fasta scores: E(): 1.9e-46, 52.83% id in 229 aa, and to Escherichia coli O6 hypothetical protein C3636 SWALL:Q8FDV0 (EMBL:AE016766) (269 aa) fasta scores: E(): 4.8e-19, 34.41% id in 215 aa; hypothetical protein 2593812 3285186 BF9343_2132 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211842.1 2593066 D 272559 CDS YP_211843.1 60681699 3289142 2593904..2594725 1 NC_003228.3 Similar to Corynebacterium glutamicum 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB or CGl0114 SWALL:PANB_CORGL (SWALL:Q9X712) (271 aa) fasta scores: E(): 3.9e-42, 49.62% id in 266 aa, and to Bacteroides thetaiotaomicron 3-methyl-2-oxobutanoate hydroxymethyltransferase BT0698 SWALL:AAO75805 (EMBL:AE016928) (273 aa) fasta scores: E(): 1.8e-92, 95.23% id in 273 aa; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2594725 panB 3289142 panB Bacteroides fragilis NCTC 9343 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_211843.1 2593904 D 272559 CDS YP_211844.1 60681700 3285230 2594733..2595899 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative sugar transporter BTt0699 SWALL:AAO75806 (EMBL:AE016928) (385 aa) fasta scores: E(): 3.6e-85, 60.51% id in 390 aa, and to Oceanobacillus iheyensis antibiotic resistance protein OB3076 SWALL:Q8CX72 (EMBL:AP004603) (396 aa) fasta scores: E(): 2.4e-18, 24.49% id in 392 aa; putative transport-related membrane protein 2595899 3285230 BF9343_2134 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_211844.1 2594733 D 272559 CDS YP_211845.1 60681701 3285375 complement(2595986..2596372) 1 NC_003228.3 Similar to Bacillus subtilis diacylglycerol kinase DgkA or Dgk SWALL:KDGL_BACSU (SWALL:P19638) (114 aa) fasta scores: E(): 3.7e-10, 36.44% id in 107 aa, and to Staphylococcus epidermidis diacylglycerol kinase SE1256 SWALL:Q8CSD4 (EMBL:AE016748) (118 aa) fasta scores: E(): 1.4e-13, 38.98% id in 118 aa; putative diacylglycerol kinase 2596372 3285375 BF9343_2135 Bacteroides fragilis NCTC 9343 putative diacylglycerol kinase YP_211845.1 2595986 R 272559 CDS YP_211846.1 60681702 3289294 complement(2596375..2598588) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri GTP pyrophosphokinase RelA or B2784 or C3347 or Z4099 or ECS3644 or SF2797 SWALL:RELA_ECOLI (SWALL:P11585) (744 aa) fasta scores: E(): 5.9e-66, 32.21% id in 742 aa, and to Bacteroides thetaiotaomicron GTP pyrophosphokinase BT0700 SWALL:AAO75807 (EMBL:AE016928) (738 aa) fasta scores: E(): 0, 82.52% id in 738 aa; GTP pyrophosphokinase 2598588 relA 3289294 relA Bacteroides fragilis NCTC 9343 GTP pyrophosphokinase YP_211846.1 2596375 R 272559 CDS YP_211847.1 60681703 3285305 2598696..2600213 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0701 SWALL:AAO75808 (EMBL:AE016928) (505 aa) fasta scores: E(): 7.5e-177, 88.71% id in 505 aa; hypothetical protein 2600213 3285305 BF9343_2137 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211847.1 2598696 D 272559 CDS YP_211848.1 60681704 3285325 complement(2600283..2600528) 1 NC_003228.3 Similar to Bacteroides fragilis RNA binding protein Rbp SWALL:Q938I5 (EMBL:AY050657) (80 aa) fasta scores: E(): 1.6e-20, 77.92% id in 77 aa, and to Synechocystis sp. putative RNA-binding protein RbpA or SLL0517 SWALL:RBPA_SYNY3 (SWALL:Q57014) (101 aa) fasta scores: E(): 2.4e-12, 53.75% id in 80 aa. Note: Also similar to BF3897 (82 aa), fasta scores: E(): 4e-20, 67.500% identity in 80 aa overlap; putative RNA-binding protein 2600528 3285325 BF9343_2138 Bacteroides fragilis NCTC 9343 putative RNA-binding protein YP_211848.1 2600283 R 272559 CDS YP_211849.1 60681705 3289336 2601176..2602342 1 NC_003228.3 Similar to Escherichia coli phosphoribosylglycinamide formyltransferase 2 PurT or B1849 SWALL:PURT_ECOLI (SWALL:P33221) (391 aa) fasta scores: E(): 2.1e-65, 50.64% id in 385 aa, and to Bacteroides thetaiotaomicron phosphoribosylglycinamide formyltransferase 2 BT0704 SWALL:AAO75811 (EMBL:AE016928) (388 aa) fasta scores: E(): 1.2e-140, 94.58% id in 388 aa; phosphoribosylglycinamide formyltransferase 2 2602342 purT 3289336 purT Bacteroides fragilis NCTC 9343 phosphoribosylglycinamide formyltransferase 2 YP_211849.1 2601176 D 272559 CDS YP_211850.1 60681706 3289120 2602985..2604502 1 NC_003228.3 Almost identical to the previously sequenced Bacteroides fragilis ATP synthase beta chain AtpD SWALL:ATPB_BACFR (SWALL:P13356) (505 aa) fasta scores: E(): 1.4e-177, 99.6% id in 505 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ATP synthase beta chain AtpD or UncD or PapB or B3732 or C4658 or Z5230 or ECS4674 or SF3812 SWALL:ATPB_ECOLI (SWALL:P00824) (459 aa) fasta scores: E(): 2.3e-66, 61.53% id in 494 aa; ATP synthase beta chain 2604502 atpD 3289120 atpD Bacteroides fragilis NCTC 9343 ATP synthase beta chain YP_211850.1 2602985 D 272559 CDS YP_211851.1 60681707 3289113 2604514..2604759 1 NC_003228.3 Similar to Chlorobium tepidum ATP synthase epsilon chain AtpC or CT2235 SWALL:ATPE_CHLTE (SWALL:Q8KAC8) (88 aa) fasta scores: E(): 7.1e-08, 41.33% id in 75 aa, and to Bacteroides thetaiotaomicron ATP synthase epsilon chain BT0712 SWALL:AAO75819 (EMBL:AE016928) (81 aa) fasta scores: E(): 1.5e-21, 79.01% id in 81 aa; putative ATP synthase epsilon chain; ATP synthase epsilon chain 2604759 atpC 3289113 atpC Bacteroides fragilis NCTC 9343 ATP synthase epsilon chain YP_211851.1 2604514 D 272559 CDS YP_211852.1 60681708 3285335 2604793..2605221 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0713 SWALL:AAO75820 (EMBL:AE016928) (144 aa) fasta scores: E(): 3.1e-35, 62.23% id in 143 aa; hypothetical protein 2605221 3285335 BF9343_2142 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211852.1 2604793 D 272559 CDS YP_211853.1 60681709 3285379 2605205..2606356 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ATP synthase A subunit BT0714 SWALL:AAO75821 (EMBL:AE016928) (368 aa) fasta scores: E(): 1.9e-115, 78.21% id in 381 aa, and to Rhodospirillum rubrum ATP synthase A chain AtpB SWALL:ATP6_RHORU (SWALL:P15012) (241 aa) fasta scores: E(): 1.4e-16, 32.09% id in 243 aa; putative ATP synthase A chain 2606356 3285379 BF9343_2143 Bacteroides fragilis NCTC 9343 putative ATP synthase A chain YP_211853.1 2605205 D 272559 CDS YP_211854.1 60681710 3289139 2606383..2606640 1 NC_003228.3 Similar to Synechococcus sp. ATP synthase C chain AtpE or AtpH SWALL:ATPL_SYNP6 (SWALL:P08445) (81 aa) fasta scores: E(): 1.8e-06, 52.94% id in 68 aa, and to Bacteroides thetaiotaomicron ATP synthase C subunit BT0715 SWALL:AAO75822 (EMBL:AE016928) (85 aa) fasta scores: E(): 4.7e-21, 89.41% id in 85 aa; ATP synthase C chain 2606640 atpE 3289139 atpE Bacteroides fragilis NCTC 9343 ATP synthase C chain YP_211854.1 2606383 D 272559 CDS YP_211855.1 60681711 3285444 2606656..2607153 1 NC_003228.3 Similar to Bacillus subtilis ATP synthase B chain AtpF SWALL:ATPF_BACSU (SWALL:P37814) (170 aa) fasta scores: E(): 1.1e-05, 33.75% id in 160 aa, and to Bacteroides thetaiotaomicron ATP synthase B subunit BT0716 SWALL:AAO75823 (EMBL:AE016928) (167 aa) fasta scores: E(): 4.2e-41, 84.84% id in 165 aa; putative ATP synthase B chain 2607153 3285444 BF9343_2145 Bacteroides fragilis NCTC 9343 putative ATP synthase B chain YP_211855.1 2606656 D 272559 CDS YP_211856.1 60681712 3285323 2607163..2607723 1 NC_003228.3 Similar to Enterococcus hirae ATP synthase delta chain AtpH SWALL:ATPD_ENTHR (SWALL:P26680) (180 aa) fasta scores: E(): 1.3e-08, 28.81% id in 177 aa, and to Bacteroides thetaiotaomicron ATP synthase delta chain BT0717 SWALL:AAO75824 (EMBL:AE016928) (186 aa) fasta scores: E(): 1.1e-55, 75.8% id in 186 aa; putative ATP synthase delta chain 2607723 3285323 BF9343_2146 Bacteroides fragilis NCTC 9343 putative ATP synthase delta chain YP_211856.1 2607163 D 272559 CDS YP_211857.1 60681713 3289138 2607737..2609320 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ATP synthase alpha chain AtpA or UncA or PapA or B3734 or C4660 or Z5232 or ECS4676 or SF3814 SWALL:ATPA_ECOLI (SWALL:P00822) (513 aa) fasta scores: E(): 1.3e-60, 55.64% id in 505 aa, and to Bacteroides thetaiotaomicron ATP synthase alpha chain BT0718 SWALL:AAO75825 (EMBL:AE016928) (527 aa) fasta scores: E(): 2.6e-173, 92.01% id in 526 aa; ATP synthase alpha chain 2609320 atpA 3289138 atpA Bacteroides fragilis NCTC 9343 ATP synthase alpha chain YP_211857.1 2607737 D 272559 CDS YP_211858.1 60681714 3289143 2609342..2610214 1 NC_003228.3 Similar to Bacillus subtilis ATP synthase gamma chain AtpG SWALL:ATPG_BACSU (SWALL:P37810) (290 aa) fasta scores: E(): 5.3e-30, 36.42% id in 291 aa, and to Bacteroides thetaiotaomicron ATP synthase gamma chain BT0719 SWALL:AAO75826 (EMBL:AE016928) (298 aa) fasta scores: E(): 7.8e-83, 79.46% id in 297 aa; ATP synthase gamma chain 2610214 atpG 3289143 atpG Bacteroides fragilis NCTC 9343 ATP synthase gamma chain YP_211858.1 2609342 D 272559 CDS YP_211859.1 60681715 3285353 2610372..2612906 1 NC_003228.3 N-terminal region similar to the N-terminal region of Bacteroides thetaiotaomicron putative helicase BT4130 SWALL:Q8A091 (EMBL:AE016943) (665 aa) fasta scores: E(): 2.8e-65, 41.69% id in 530 aa, and C-terminal region similar to C-terminal region of Clostridium perfringens ATP-dependent DNA helicase recq or CPE0343 SWALL:Q8XNJ0 (EMBL:AP003186) (724 aa) fasta scores: E(): 1.6e-07, 26.75% id in 228 aa; putative helicase 2612906 3285353 BF9343_2149 Bacteroides fragilis NCTC 9343 putative helicase YP_211859.1 2610372 D 272559 CDS YP_211860.1 60681716 3285317 complement(2613064..2613420) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 TrxA or TsnC or FipA or B3781 or C4701 or Z5291 or ECS4714 or STM3915 or STMD1.75 or STY3639 or T3381 or SF3854 or S3905 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1.6e-10, 39.65% id in 116 aa, and to Bacteroides thetaiotaomicron thioredoxin BT0677 SWALL:AAO75784 (EMBL:AE016928) (119 aa) fasta scores: E(): 8.4e-37, 77.96% id in 118 aa; putative thioredoxin 2613420 3285317 BF9343_2150 Bacteroides fragilis NCTC 9343 putative thioredoxin YP_211860.1 2613064 R 272559 CDS YP_211861.1 60681717 3285491 2613649..2614911 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron cation efflux system protein CzcC BT0678 SWALL:AAO75785 (EMBL:AE016928) (420 aa) fasta scores: E(): 7.9e-107, 69.28% id in 420 aa, and to Leptospira interrogans outer membrane protein precursor CzcC LA1963 SWALL:Q8CVE8 (EMBL:AE011369) (484 aa) fasta scores: E(): 1.7e-33, 29.64% id in 398 aa; putative cation efflux-related outer membrane exported protein 2614911 3285491 BF9343_2151 Bacteroides fragilis NCTC 9343 putative cation efflux-related outer membrane exported protein YP_211861.1 2613649 D 272559 CDS YP_211862.1 60681718 3285349 2614925..2616016 1 NC_003228.3 Similar to Pseudomonas fluorescens CztB SWALL:Q9ALR3 (EMBL:AY007258) (368 aa) fasta scores: E(): 1.1e-19, 25.28% id in 356 aa, and to Pseudomonas putida cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family PP0044 SWALL:AAN65678 (EMBL:AE016774) (416 aa) fasta scores: E(): 1.5e-18, 25% id in 340 aa; putative cation efflux-related lipoprotein 2616016 3285349 BF9343_2152 Bacteroides fragilis NCTC 9343 putative cation efflux-related lipoprotein YP_211862.1 2614925 D 272559 CDS YP_211863.1 60681719 3285271 2616032..2619157 1 NC_003228.3 Similar to Legionella pneumophila protein HelA SWALL:HELA_LEGPN (SWALL:Q48815) (1052 aa) fasta scores: E(): 2e-122, 35.73% id in 1041 aa, and to Bacteroides thetaiotaomicron cation efflux system protein CzcA BT0680 SWALL:AAO75787 (EMBL:AE016928) (1041 aa) fasta scores: E(): 0, 87.89% id in 1041 aa; putative cation efflux-related membrane protein 2619157 3285271 BF9343_2153 Bacteroides fragilis NCTC 9343 putative cation efflux-related membrane protein YP_211863.1 2616032 D 272559 CDS YP_211864.1 60681720 3285170 2619192..2619866 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 transcriptional regulatory protein CusR or B0571 or C0657 or Z0709 or ECS0609 SWALL:CUSR_ECOLI (SWALL:P77380) (227 aa) fasta scores: E(): 4.8e-35, 46.15% id in 221 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT0990 SWALL:AAO76097 (EMBL:AE016930) (228 aa) fasta scores: E(): 2.6e-35, 46.66% id in 225 aa; putative two component system response regulator 2619866 3285170 BF9343_2154 Bacteroides fragilis NCTC 9343 putative two component system response regulator YP_211864.1 2619192 D 272559 CDS YP_211865.1 60681721 3285344 2619884..2621221 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT0681 SWALL:AAO75788 (EMBL:AE016928) (443 aa) fasta scores: E(): 1.4e-111, 68.69% id in 444 aa, and to Thermoanaerobacter tengcongensis sensory transduction histidine kinases BaeS5 or TTE1017 SWALL:Q8RB09 (EMBL:AE013066) (462 aa) fasta scores: E(): 8.3e-23, 27.38% id in 471 aa; putative two component system sensor histidine kinase 2621221 3285344 BF9343_2155 Bacteroides fragilis NCTC 9343 putative two component system sensor histidine kinase YP_211865.1 2619884 D 272559 CDS YP_211866.1 60681722 3285265 2621405..2622079 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri multiple antibiotic resistance protein MarC or B1529 or SF1565 SWALL:MARC_ECOLI (SWALL:P31123) (221 aa) fasta scores: E(): 1.9e-09, 23.74% id in 219 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4504 SWALL:AAO79609 (EMBL:AE016945) (224 aa) fasta scores: E(): 1.6e-77, 88.83% id in 224 aa; putative MarC-family antibiotic resistance related membrane protein 2622079 3285265 BF9343_2156 Bacteroides fragilis NCTC 9343 putative MarC-family antibiotic resistance related membrane protein YP_211866.1 2621405 D 272559 CDS YP_211867.1 60681723 3285377 complement(2622269..2624014) 1 NC_003228.3 N-terminal similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3593 SWALL:AAO78698 (EMBL:AE016941) (358 aa) fasta scores: E(): 6.2e-34, 35.04% id in 371 aa, and C-terminal similar to Homo sapiens platelet-activating factor acetylhydrolase IB gamma subunit PAF-AH1B3 or PAF-AHG SWALL:PA1G_HUMAN (SWALL:Q15102) (231 aa) fasta scores: E(): 1.4e-12, 31.19% id in 218 aa; putative hydrolase lipoprotein 2624014 3285377 BF9343_2157 Bacteroides fragilis NCTC 9343 putative hydrolase lipoprotein YP_211867.1 2622269 R 272559 CDS YP_211868.1 60681724 3285342 complement(2624209..2624916) 1 NC_003228.3 Similar to Chlorobium tepidum precorrin-2 C20-methyltransferase CbiL or CT0388 SWALL:Q8KFD9 (EMBL:AE012816) (246 aa) fasta scores: E(): 1.4e-19, 34.52% id in 223 aa, and to Pseudomonas denitrificans precorrin-2 C20-methyltransferase CobI SWALL:COBI_PSEDE (SWALL:P21639) (244 aa) fasta scores: E(): 4.6e-11, 29.18% id in 233 aa; putative cobalamin synthesis related methyltransferase protein 2624916 3285342 BF9343_2158 Bacteroides fragilis NCTC 9343 putative cobalamin synthesis related methyltransferase protein YP_211868.1 2624209 R 272559 CDS YP_211869.1 60681725 3285124 2625030..2626178 1 NC_003228.3 Similar to Anabaena sp. periplasmic-binding protein of ABC transporter ALR4031 SWALL:Q8YQ09 (EMBL:AP003595) (426 aa) fasta scores: E(): 1e-37, 31.71% id in 391 aa, and to Chlorobium tepidum iron CT0410 SWALL:Q8KFB7 (EMBL:AE012818) (403 aa) fasta scores: E(): 2.2e-30, 30.87% id in 379 aa; putative exported periplasmic protein 2626178 3285124 BF9343_2159 Bacteroides fragilis NCTC 9343 putative exported periplasmic protein YP_211869.1 2625030 D 272559 CDS YP_211870.1 60681726 3285283 2626187..2627224 1 NC_003228.3 Similar to Yersinia pestis hemin transport system permease protein HmuU or YPO0280 or Y0540 SWALL:HMUU_YERPE (SWALL:Q56992) (334 aa) fasta scores: E(): 1.5e-29, 33.84% id in 328 aa, and to Chlorobium tepidum iron CT0411 SWALL:Q8KFB6 (EMBL:AE012818) (362 aa) fasta scores: E(): 1.7e-56, 47.77% id in 337 aa. Note: This CDS is also similar to BF1185 (335 aa) fasta scores: E(): 1.9e-49, 41.212% identity in 330 aa overlap; putative iron transport related membrane protein 2627224 3285283 BF9343_2160 Bacteroides fragilis NCTC 9343 putative iron transport related membrane protein YP_211870.1 2626187 D 272559 CDS YP_211871.1 60681727 3285338 2627231..2628259 1 NC_003228.3 Similar to Escherichia coli iron FecE or B4287 SWALL:FECE_ECOLI (SWALL:P15031) (255 aa) fasta scores: E(): 1.4e-20, 35.41% id in 240 aa, and to Anabaena sp. ATP-binding protein of ferrichrome ABC transporter ALR4033 SWALL:Q8YQ07 (EMBL:AP003595) (333 aa) fasta scores: E(): 7.7e-45, 42.63% id in 326 aa; putative iron transport related ATP-binding protein 2628259 3285338 BF9343_2161 Bacteroides fragilis NCTC 9343 putative iron transport related ATP-binding protein YP_211871.1 2627231 D 272559 CDS YP_211872.1 60681728 3288016 complement(2628393..2629283) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron DTDP-4-dehydrorhamnose reductase BT0725 SWALL:AAO75832 (EMBL:AE016928) (302 aa) fasta scores: E(): 7.5e-80, 68.47% id in 295 aa, and to Bacillus subtilis spore coat polysaccharide biosynthesis protein SpsK or IPA-73D SWALL:SPSK_BACSU (SWALL:P39631) (432 aa) fasta scores: E(): 1.6e-18, 31.25% id in 288 aa; putative rhamnose biosynthesis-related protein 2629283 3288016 BF9343_2162 Bacteroides fragilis NCTC 9343 putative rhamnose biosynthesis-related protein YP_211872.1 2628393 R 272559 CDS YP_211873.1 60681729 3285197 complement(2629296..2629829) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0731 SWALL:AAO75838 (EMBL:AE016929) (178 aa) fasta scores: E(): 1.5e-41, 62.98% id in 181 aa; hypothetical protein 2629829 3285197 BF9343_2163 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211873.1 2629296 R 272559 CDS YP_211874.1 60681730 3285385 complement(2629893..2630684) 1 NC_003228.3 hypothetical protein 2630684 3285385 BF9343_2164 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211874.1 2629893 R 272559 CDS YP_211875.1 60681731 3285148 complement(2630694..2631389) 1 NC_003228.3 Similar to Pseudomonas syringae transcriptional activator protein CopR SWALL:COPR_PSESM (SWALL:Q02540) (227 aa) fasta scores: E(): 2.7e-22, 34.51% id in 226 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT0732 SWALL:AAO75839 (EMBL:AE016929) (231 aa) fasta scores: E(): 2.5e-73, 83.47% id in 230 aa; putative two component system response regulator 2631389 3285148 BF9343_2165 Bacteroides fragilis NCTC 9343 putative two component system response regulator YP_211875.1 2630694 R 272559 CDS YP_211876.1 60681732 3285395 complement(2631386..2632852) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT0733 SWALL:AAO75840 (EMBL:AE016929) (459 aa) fasta scores: E(): 2.9e-93, 59.25% id in 481 aa, and to Bacteroides fragilis sensor protein RprX SWALL:Q08408 (EMBL:S59000) (519 aa) fasta scores: E(): 1.7e-28, 27.63% id in 503 aa; putative two component system sensor histidine kinase 2632852 3285395 BF9343_2166 Bacteroides fragilis NCTC 9343 putative two component system sensor histidine kinase YP_211876.1 2631386 R 272559 CDS YP_211877.1 60681733 3285211 2633122..2635239 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0734 SWALL:AAO75841 (EMBL:AE016929) (702 aa) fasta scores: E(): 6.9e-165, 59.34% id in 706 aa, and to Bacteroides fragilis hypothetical 87.4 kDa protein SWALL:Q8RM77 (EMBL:AY053505) (763 aa) fasta scores: E(): 6.5e-85, 37.29% id in 665 aa; hypothetical protein 2635239 3285211 BF9343_2167 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211877.1 2633122 D 272559 CDS YP_211878.1 60681734 3285263 complement(2635266..2637275) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1802 SWALL:AAO76909 (EMBL:AE016933) (685 aa) fasta scores: E(): 6.2e-60, 33.86% id in 685 aa, and C-terminal region similar to C-terminal region of Escherichia coli sensor protein RcsC or B2218 SWALL:RCSC_ECOLI (SWALL:P14376) (949 aa) fasta scores: E(): 3.2e-15, 29.59% id in 321 aa; putative sensor histidine kinase 2637275 3285263 BF9343_2168 Bacteroides fragilis NCTC 9343 putative sensor histidine kinase YP_211878.1 2635266 R 272559 CDS YP_211879.1 60681735 3285334 2637444..2639111 1 NC_003228.3 Similar to Clostridium acidi-urici formate--tetrahydrofolate ligase Fhs SWALL:FTHS_CLOAC (SWALL:P13419) (556 aa) fasta scores: E(): 1.1e-113, 54.13% id in 556 aa, and to Bacteroides thetaiotaomicron formate--tetrahydrofolate ligase BT0737 SWALL:Q8A9S8 (EMBL:AE016929) (555 aa) fasta scores: E(): 5e-197, 92.25% id in 555 aa; formate--tetrahydrofolate ligase 2639111 fhs 3285334 fhs Bacteroides fragilis NCTC 9343 formate--tetrahydrofolate ligase YP_211879.1 2637444 D 272559 CDS YP_211880.1 60681736 3285303 complement(2639405..2640115) 1 NC_003228.3 hypothetical protein 2640115 3285303 BF9343_2170 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211880.1 2639405 R 272559 CDS YP_211881.1 60681737 3286812 complement(2640299..2641579) 1 NC_003228.3 Similar to Bacillus subtilis serine hydroxymethyltransferase GlyA or GlyC or IPC-34D SWALL:GLYA_BACSU (SWALL:P39148) (415 aa) fasta scores: E(): 1.5e-53, 56.87% id in 422 aa, and to Borrelia burgdorferi serine hydroxymethyltransferase GlyA or BB0601 SWALL:GLYA_BORBU (SWALL:O51547) (417 aa) fasta scores: E(): 6.3e-76, 51.41% id in 424 aa; serine hydroxymethyltransferase 2641579 glyA 3286812 glyA Bacteroides fragilis NCTC 9343 serine hydroxymethyltransferase YP_211881.1 2640299 R 272559 CDS YP_211882.1 60681738 3285489 complement(2641687..2642415) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0739 SWALL:AAO75846 (EMBL:AE016929) (245 aa) fasta scores: E(): 3.6e-69, 70.53% id in 241 aa; hypothetical protein 2642415 3285489 BF9343_2172 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211882.1 2641687 R 272559 CDS YP_211883.1 60681739 3285118 complement(2642412..2642981) 1 NC_003228.3 Similar to Desulfovibrio gigas flavoredoxin Flr SWALL:FLR_DESGI (SWALL:Q9KIT1) (194 aa) fasta scores: E(): 1.2e-17, 31.49% id in 181 aa, and to Bacteroides thetaiotaomicron flavoredoxin BT0740 SWALL:AAO75847 (EMBL:AE016929) (179 aa) fasta scores: E(): 1.8e-69, 89.32% id in 178 aa; putative flavoredoxin 2642981 3285118 BF9343_2173 Bacteroides fragilis NCTC 9343 putative flavoredoxin YP_211883.1 2642412 R 272559 CDS YP_211884.1 60681740 3287983 complement(2643067..2643528) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 aspartate carbamoyltransferase regulatory chain PyrI or B4244 or C5344 or Z5855 or ECS5221 SWALL:PYRI_ECOLI (SWALL:P00478) (152 aa) fasta scores: E(): 1.3e-17, 40.55% id in 143 aa, and to Bacteroides thetaiotaomicron aspartate carbamoyltransferase regulatory chain BT0741 SWALL:AAO75848 (EMBL:AE016929) (153 aa) fasta scores: E(): 2.4e-53, 91.5% id in 153 aa; aspartate carbamoyltransferase regulatory chain 2643528 pyrI 3287983 pyrI Bacteroides fragilis NCTC 9343 aspartate carbamoyltransferase regulatory chain YP_211884.1 2643067 R 272559 CDS YP_211885.1 60681741 3287977 complement(2643533..2644459) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri aspartate carbamoyltransferase catalytic chain PyrB or B4245 or C5345 or Z5856 or ECS5222 or SF4245 SWALL:PYRB_ECOLI (SWALL:P00479) (310 aa) fasta scores: E(): 3.2e-56, 53.13% id in 303 aa, and to Bacteroides thetaiotaomicron aspartate carbamoyltransferase catalytic chain BT0742 SWALL:AAO75849 (EMBL:AE016929) (313 aa) fasta scores: E(): 1.9e-110, 92.5% id in 307 aa; aspartate carbamoyltransferase catalytic chain 2644459 pyrB 3287977 pyrB Bacteroides fragilis NCTC 9343 aspartate carbamoyltransferase catalytic chain YP_211885.1 2643533 R 272559 CDS YP_211886.1 60681742 3285507 2645166..2645786 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative surface protein, function unknown BT0722 SWALL:AAO75829 (EMBL:AE016928) (206 aa) fasta scores: E(): 5.8e-65, 81.06% id in 206 aa, and to Fusobacterium nucleatum putative surface protein FN1083 SWALL:Q8REL6 (EMBL:AE010614) (198 aa) fasta scores: E(): 8.5e-07, 32.35% id in 204 aa; hypothetical protein 2645786 3285507 BF9343_2176 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211886.1 2645166 D 272559 CDS YP_211887.1 60681743 3285258 complement(2645787..2646716) 1 NC_003228.3 Low similarity to Bacteroides thetaiotaomicron hypothetical protein BT1062 SWALL:AAO76169 (EMBL:AE016930) (317 aa) fasta scores: E(): 3.2e-14, 26.39% id in 322 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2657 SWALL:AAO77764 (EMBL:AE016936) (338 aa) fasta scores: E(): 2e-11, 28.12% id in 224 aa; hypothetical protein 2646716 3285258 BF9343_2177 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211887.1 2645787 R 272559 CDS YP_211888.1 60681744 3285501 complement(2646728..2648107) 1 NC_003228.3 putative lipoprotein 2648107 3285501 BF9343_2178 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211888.1 2646728 R 272559 CDS YP_211889.1 60681745 3285161 2648342..2649304 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1060 SWALL:AAO76167 (EMBL:AE016930) (317 aa) fasta scores: E(): 8.2e-62, 52.2% id in 318 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1061 SWALL:AAO76168 (EMBL:AE016930) (319 aa) fasta scores: E(): 1.3e-48, 42.94% id in 319 aa; hypothetical protein 2649304 3285161 BF9343_2179 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211889.1 2648342 D 272559 CDS YP_211890.1 60681746 3285429 2649484..2651655 1 NC_003228.3 hypothetical protein 2651655 3285429 BF9343_2180 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211890.1 2649484 D 272559 CDS YP_211891.1 60681747 3285218 complement(2651659..2652609) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1219 SWALL:AAO76326 (EMBL:AE016931) (316 aa) fasta scores: E(): 8.3e-106, 83.54% id in 316 aa, and to Escherichia coli hypothetical protein YfeX or B2431 SWALL:YFEX_ECOLI (SWALL:P76536) (299 aa) fasta scores: E(): 4.9e-27, 33% id in 306 aa; putative peroxidase family protein 2652609 3285218 BF9343_2181 Bacteroides fragilis NCTC 9343 putative peroxidase family protein YP_211891.1 2651659 R 272559 CDS YP_211892.1 60681748 3285214 complement(2652830..2654914) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2806 SWALL:AAO77912 (EMBL:AE016937) (666 aa) fasta scores: E(): 6.7e-71, 39.29% id in 710 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3175 SWALL:AAO78281 (EMBL:AE016939) (621 aa) fasta scores: E(): 6.4e-11, 26.94% id in 694 aa; putative lipoprotein 2654914 3285214 BF9343_2182 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211892.1 2652830 R 272559 CDS YP_211893.1 60681749 3285318 complement(2654931..2658200) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 2.3e-188, 46.73% id in 1057 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0140 SWALL:AAO75247 (EMBL:AE016926) (1097 aa) fasta scores: E(): 5.3e-90, 31.78% id in 1098 aa; hypothetical protein 2658200 3285318 BF9343_2183 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211893.1 2654931 R 272559 CDS YP_211894.1 60681750 3285129 2658444..2659025 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0772 SWALL:AAO75879 (EMBL:AE016929) (158 aa) fasta scores: E(): 6.6e-20, 40.74% id in 162 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0922 SWALL:AAO76029 (EMBL:AE016929) (293 aa) fasta scores: E(): 2.3e-10, 36.79% id in 125 aa; hypothetical protein 2659025 3285129 BF9343_2184 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211894.1 2658444 D 272559 CDS YP_211895.1 60681751 3285298 complement(2659113..2660054) 1 NC_003228.3 hypothetical protein 2660054 3285298 BF9343_2185 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211895.1 2659113 R 272559 CDS YP_211896.1 60681752 3285262 complement(2660356..2661657) 1 NC_003228.3 hypothetical protein 2661657 3285262 BF9343_2186 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211896.1 2660356 R 272559 CDS YP_211897.1 60681753 3285438 complement(2661654..2662484) 1 NC_003228.3 Similar to Pasteurella multocida 3-deoxy-manno-octulosonate cytidylyltransferase KdsB or PM0858 SWALL:KDSB_PASMU (SWALL:P57883) (258 aa) fasta scores: E(): 2.6e-20, 36.7% id in 267 aa, and to Escherichia coli 3-deoxy-manno-octulosonate cytidylyltransferase KdsB or B0918 SWALL:KDSB_ECOLI (SWALL:P04951) (247 aa) fasta scores: E(): 3.7e-08, 36.29% id in 259 aa; putative lipopolysaccharide biosynthesis 2662484 3285438 BF9343_2187 Bacteroides fragilis NCTC 9343 putative lipopolysaccharide biosynthesis YP_211897.1 2661654 R 272559 CDS YP_211898.1 60681754 3285302 2663341..2663808 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0615 SWALL:AAO75722 (EMBL:AE016928) (172 aa) fasta scores: E(): 3.9e-36, 79.13% id in 139 aa, and to Bacteroides fragilis hypothetical 17.0 kDa protein ORF8 SWALL:Q9F747 (EMBL:AF285774) (157 aa) fasta scores: E(): 9.7e-09, 30.71% id in 153 aa; hypothetical protein 2663808 3285302 BF9343_2188 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211898.1 2663341 D 272559 CDS YP_211899.1 60681755 3285242 2664019..2666352 1 NC_003228.3 Similar to Cytophaga johnsonae PonA SWALL:Q8KRN9 (EMBL:AF527791) (768 aa) fasta scores: E(): 2.9e-45, 44.82% id in 763 aa, and to Bacillus subtilis penicillin-binding protein 1f PbpF or PonA SWALL:PBPF_BACSU (SWALL:P38050) (714 aa) fasta scores: E(): 5.7e-22, 26.39% id in 716 aa; putative penicillin-binding peptidoglycan biosynthesis-related exported protein 2666352 3285242 BF9343_2189 Bacteroides fragilis NCTC 9343 putative penicillin-binding peptidoglycan biosynthesis-related exported protein YP_211899.1 2664019 D 272559 CDS YP_211900.1 60681756 3285299 2666797..2668083 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative zinc protease BT0746 SWALL:AAO75853 (EMBL:AE016929) (427 aa) fasta scores: E(): 3.3e-135, 76.86% id in 428 aa, and to Bacillus subtilis hypothetical zinc protease YmxG SWALL:YMXG_BACSU (SWALL:Q04805) (409 aa) fasta scores: E(): 2.9e-16, 24.71% id in 352 aa; putative peptidase 2668083 3285299 BF9343_2191 Bacteroides fragilis NCTC 9343 putative peptidase YP_211900.1 2666797 D 272559 CDS YP_211901.1 60681757 3285467 2668110..2669294 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative phosphatidylinositol-4-phosphate 5-kinase BT0747 SWALL:AAO75854 (EMBL:AE016929) (389 aa) fasta scores: E(): 1.5e-127, 78.23% id in 386 aa, and to Pseudomonas syringae MORN repeat family protein PSPTO0733 SWALL:AAO54275 (EMBL:AE016858) (575 aa) fasta scores: E(): 5.1e-25, 31.97% id in 269 aa. Note: The rest of the database matches are to eukaryotic organisms.; hypothetical protein 2669294 3285467 BF9343_2192 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211901.1 2668110 D 272559 CDS YP_211902.1 60681758 3287784 complement(2669376..2670293) 1 NC_003228.3 Similar to Chlorobium tepidum ribose-phosphate pyrophosphokinase Prs or PrsA or CT1361 SWALL:KPRS_CHLTE (SWALL:Q8KCQ2) (323 aa) fasta scores: E(): 2.6e-56, 52.15% id in 301 aa, and to Bacteroides thetaiotaomicron ribose-phosphate pyrophosphokinase BT0748 SWALL:AAO75855 (EMBL:AE016929) (305 aa) fasta scores: E(): 4e-110, 98.03% id in 305 aa; ribose-phosphate pyrophosphokinase 2670293 prs 3287784 prs Bacteroides fragilis NCTC 9343 ribose-phosphate pyrophosphokinase YP_211902.1 2669376 R 272559 CDS YP_211903.1 60681759 3285417 2670430..2674920 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT0749 SWALL:AAO75856 (EMBL:AE016929) (1415 aa) fasta scores: E(): 0, 69.45% id in 1470 aa, and in its C-terminal region to Enterococcus faecalis sensor histidine kinase EF0927 SWALL:AAO80735 (EMBL:AE016949) (341 aa) fasta scores: E(): 1.4e-05, 23.35% id in 274 aa; putative two component system sensor histidine kinase 2674920 3285417 BF9343_2194 Bacteroides fragilis NCTC 9343 putative two component system sensor histidine kinase YP_211903.1 2670430 D 272559 CDS YP_211904.1 60681760 3288317 2674949..2675677 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0750 SWALL:AAO75857 (EMBL:AE016929) (242 aa) fasta scores: E(): 2.1e-83, 95.45% id in 242 aa, and to Bacillus brevis transcriptional regulatory protein DegU SWALL:DEGU_BACBR (SWALL:P54662) (236 aa) fasta scores: E(): 3.2e-05, 21.42% id in 224 aa; putative two component system response regulator 2675677 3288317 BF9343_2195 Bacteroides fragilis NCTC 9343 putative two component system response regulator YP_211904.1 2674949 D 272559 CDS YP_211905.1 60681761 3285322 2675685..2677121 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative efflux pump component protein BT0751 SWALL:AAO75858 (EMBL:AE016929) (478 aa) fasta scores: E(): 9.7e-149, 75.1% id in 478 aa, and to Escherichia coli aminobenzoyl-glutamate transport protein AbgT or B1336 SWALL:ABGT_ECOLI (SWALL:P46133) (510 aa) fasta scores: E(): 3.3e-52, 31.59% id in 478 aa; putative transport-related membrane protein 2677121 3285322 BF9343_2196 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_211905.1 2675685 D 272559 CDS YP_211906.1 60681762 3285249 2677465..2678628 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transposase BT4739 SWALL:AAO79844 (EMBL:AE016946) (407 aa) fasta scores: E(): 2.1e-19, 26.75% id in 385 aa, and to Bacteroides fragilis putative integrase SWALL:Q8RM59 (EMBL:AY053505) (407 aa) fasta scores: E(): 4e-09, 23.48% id in 396 aa; putative phage integrase 2678628 3285249 BF9343_2197 Bacteroides fragilis NCTC 9343 putative phage integrase YP_211906.1 2677465 D 272559 CDS YP_211907.1 60681763 3285104 complement(2678724..2679125) 1 NC_003228.3 Similar to Photorhabdus luminescens ORF36 SWALL:AAO18061 (EMBL:AY144116) (133 aa) fasta scores: E(): 1.2e-16, 44.03% id in 134 aa, and to Vibrio parahaemolyticus putative structural protein P5 VP1566 or VPA0893 SWALL:BAC62236 (EMBL:AP005078) (156 aa) fasta scores: E(): 2.9e-10, 35.65% id in 115 aa; hypothetical protein 2679125 3285104 BF9343_2198 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211907.1 2678724 R 272559 CDS YP_211908.1 60681764 3285440 complement(2679242..2679847) 1 NC_003228.3 hypothetical protein 2679847 3285440 BF9343_2199 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211908.1 2679242 R 272559 CDS YP_211909.1 60681765 3285238 complement(2679864..2680193) 1 NC_003228.3 hypothetical protein 2680193 3285238 BF9343_2200 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211909.1 2679864 R 272559 CDS YP_211910.1 60681766 3285328 complement(2680203..2681354) 1 NC_003228.3 hypothetical protein 2681354 3285328 BF9343_2201 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211910.1 2680203 R 272559 CDS YP_211911.1 60681767 3285309 complement(2681476..2682561) 1 NC_003228.3 hypothetical protein 2682561 3285309 BF9343_2202 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211911.1 2681476 R 272559 CDS YP_211912.1 60681768 3288318 complement(2682561..2687564) 1 NC_003228.3 hypothetical protein 2687564 3288318 BF9343_2203 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211912.1 2682561 R 272559 CDS YP_211913.1 60681769 3285366 complement(2687566..2688696) 1 NC_003228.3 hypothetical protein 2688696 3285366 BF9343_2204 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211913.1 2687566 R 272559 CDS YP_211914.1 60681770 3285394 complement(2688693..2688917) 1 NC_003228.3 hypothetical protein 2688917 3285394 BF9343_2205 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211914.1 2688693 R 272559 CDS YP_211915.1 60681771 3285313 complement(2688959..2691157) 1 NC_003228.3 hypothetical protein 2691157 3285313 BF9343_2206 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211915.1 2688959 R 272559 CDS YP_211916.1 60681772 3285354 complement(2691161..2694883) 1 NC_003228.3 Similar to the C-terminal region of eukaryotic database matches as Rattus norvegicus myosin heavy chain, cardiac muscle alpha isoform Myh6 SWALL:MYH6_RAT (SWALL:P02563) (1938 aa) fasta scores: E(): 5.4e-06, 21.34% id in 1026 aa, and to Mesocricetus auratus myosin heavy chain, cardiac muscle alpha isoform Myh6 SWALL:MYH6_MESAU (SWALL:P13539) (1939 aa) fasta scores: E(): 1.6e-05, 20.81% id in 1028 aa; hypothetical protein 2694883 3285354 BF9343_2207 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211916.1 2691161 R 272559 CDS YP_211917.1 60681773 3285404 complement(2694885..2695505) 1 NC_003228.3 hypothetical protein 2695505 3285404 BF9343_2208 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211917.1 2694885 R 272559 CDS YP_211918.1 60681774 3285360 complement(2695508..2695993) 1 NC_003228.3 hypothetical protein 2695993 3285360 BF9343_2209 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211918.1 2695508 R 272559 CDS YP_211919.1 60681775 3285543 complement(2696497..2696937) 1 NC_003228.3 hypothetical protein 2696937 3285543 BF9343_2210 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211919.1 2696497 R 272559 CDS YP_211920.1 60681776 3285359 complement(2697085..2697435) 1 NC_003228.3 hypothetical protein 2697435 3285359 BF9343_2211 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211920.1 2697085 R 272559 CDS YP_211921.1 60681777 3285364 complement(2697699..2698265) 1 NC_003228.3 Similar to Bradyrhizobium japonicum BLR2118 protein SWALL:BAC47383 (EMBL:AP005942) (189 aa) fasta scores: E(): 2.7e-11, 34.75% id in 141 aa; hypothetical protein 2698265 3285364 BF9343_2212 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211921.1 2697699 R 272559 CDS YP_211922.1 60681778 3285266 complement(2698469..2698969) 1 NC_003228.3 hypothetical protein 2698969 3285266 BF9343_2213 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211922.1 2698469 R 272559 CDS YP_211923.1 60681779 3285307 2699099..2699689 1 NC_003228.3 putative lipoprotein 2699689 3285307 BF9343_2214 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211923.1 2699099 D 272559 CDS YP_211924.1 60681780 3285110 complement(2700165..2700587) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4467 SWALL:AAO79572 (EMBL:AE016945) (144 aa) fasta scores: E(): 6.7e-08, 29.71% id in 138 aa; hypothetical protein 2700587 3285110 BF9343_2215 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211924.1 2700165 R 272559 CDS YP_211925.1 60681781 3285237 complement(2700672..2700908) 1 NC_003228.3 hypothetical protein 2700908 3285237 BF9343_2216 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211925.1 2700672 R 272559 CDS YP_211926.1 60681782 3285369 complement(2700938..2701789) 1 NC_003228.3 hypothetical protein 2701789 3285369 BF9343_2217 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211926.1 2700938 R 272559 CDS YP_211927.1 60681783 3285352 complement(2701794..2702732) 1 NC_003228.3 hypothetical protein 2702732 3285352 BF9343_2218 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211927.1 2701794 R 272559 CDS YP_211928.1 60681784 3285236 complement(2702729..2704153) 1 NC_003228.3 hypothetical protein 2704153 3285236 BF9343_2219 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211928.1 2702729 R 272559 CDS YP_211929.1 60681785 3285415 complement(2704379..2704912) 1 NC_003228.3 hypothetical protein 2704912 3285415 BF9343_2220 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211929.1 2704379 R 272559 CDS YP_211930.1 60681786 3285223 complement(2704909..2705367) 1 NC_003228.3 hypothetical protein 2705367 3285223 BF9343_2221 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211930.1 2704909 R 272559 CDS YP_211931.1 60681787 3285177 2705822..2706313 1 NC_003228.3 hypothetical protein 2706313 3285177 BF9343_2222 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211931.1 2705822 D 272559 CDS YP_211932.1 60681788 3285212 2706395..2706745 1 NC_003228.3 No significant database matches. This CDS overlaps 12 nt with the downstream CDS; hypothetical protein 2706745 3285212 BF9343_2223 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211932.1 2706395 D 272559 CDS YP_211933.1 60681789 3285462 2706732..2707478 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron type I restriction enzyme, M subunit BT2589 SWALL:AAO77696 (EMBL:AE016936) (256 aa) fasta scores: E(): 1e-12, 31.86% id in 204 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:Q8GHX1 (EMBL:AB088420) (279 aa) fasta scores: E(): 1.8e-07, 27.47% id in 222 aa. CDS overlaps 12 nt with the upstream CDS.; putative type I restriction modification system related protein 2707478 3285462 BF9343_2224 Bacteroides fragilis NCTC 9343 putative type I restriction modification system related protein YP_211933.1 2706732 D 272559 CDS YP_211934.1 60681790 3285423 complement(2707847..2709568) 1 NC_003228.3 hypothetical protein 2709568 3285423 BF9343_2225 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211934.1 2707847 R 272559 CDS YP_211935.1 60681791 3285273 complement(2709565..2710170) 1 NC_003228.3 hypothetical protein 2710170 3285273 BF9343_2226 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211935.1 2709565 R 272559 CDS YP_211936.1 60681792 3288032 complement(2710174..2710461) 1 NC_003228.3 hypothetical protein 2710461 3288032 BF9343_2227 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211936.1 2710174 R 272559 CDS YP_211937.1 60681793 3285208 complement(2710464..2710922) 1 NC_003228.3 hypothetical protein 2710922 3285208 BF9343_2228 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211937.1 2710464 R 272559 CDS YP_211938.1 60681794 3285422 complement(2710936..2711892) 1 NC_003228.3 hypothetical protein 2711892 3285422 BF9343_2229 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211938.1 2710936 R 272559 CDS YP_211939.1 60681795 3285443 complement(2711910..2712629) 1 NC_003228.3 hypothetical protein 2712629 3285443 BF9343_2230 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211939.1 2711910 R 272559 CDS YP_211940.1 60681796 3285410 complement(2712687..2713955) 1 NC_003228.3 hypothetical protein 2713955 3285410 BF9343_2231 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211940.1 2712687 R 272559 CDS YP_211941.1 60681797 3285470 complement(2713991..2714968) 1 NC_003228.3 hypothetical protein 2714968 3285470 BF9343_2232 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211941.1 2713991 R 272559 CDS YP_211942.1 60681798 3285497 complement(2715022..2715477) 1 NC_003228.3 hypothetical protein 2715477 3285497 BF9343_2233 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211942.1 2715022 R 272559 CDS YP_211943.1 60681799 3285343 complement(2715571..2715927) 1 NC_003228.3 hypothetical protein 2715927 3285343 BF9343_2234 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211943.1 2715571 R 272559 CDS YP_211944.1 60681800 3285327 complement(2716588..2716917) 1 NC_003228.3 hypothetical protein 2716917 3285327 BF9343_2235 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211944.1 2716588 R 272559 CDS YP_211945.1 60681801 3285127 complement(2716984..2717313) 1 NC_003228.3 hypothetical protein 2717313 3285127 BF9343_2236 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211945.1 2716984 R 272559 CDS YP_211946.1 60681802 3285152 complement(2717325..2717714) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron single-strand binding protein BT1497 SWALL:AAO76604 (EMBL:AE016932) (161 aa) fasta scores: E(): 2.4e-17, 46.15% id in 130 aa, and to Rickettsia prowazekii single-strand binding protein Ssb or RP836 SWALL:SSB_RICPR (SWALL:Q9ZCC2) (152 aa) fasta scores: E(): 6.9e-12, 44.34% id in 115 aa; putative single-strand binding protein 2717714 3285152 BF9343_2237 Bacteroides fragilis NCTC 9343 putative single-strand binding protein YP_211946.1 2717325 R 272559 CDS YP_211947.1 60681803 3285162 complement(2717731..2720784) 1 NC_003228.3 Similar to the N-terminal region of Bacillus subtilis DNA primase DnaG or DnaE or BSU25210 SWALL:PRIM_BACSU (SWALL:P05096) (603 aa) fasta scores: E(): 8.8e-08, 24.63% id in 345 aa, and to the full length of Staphylococcus aureus DNA primase DnaG or SAV1562 or SA1391 SWALL:Q99TT4 (EMBL:AP003362) (605 aa) fasta scores: E(): 1e-05, 20.34% id in 639 aa; putative DNA primase 2720784 3285162 BF9343_2238 Bacteroides fragilis NCTC 9343 putative DNA primase YP_211947.1 2717731 R 272559 CDS YP_211948.1 60681804 3285339 complement(2721087..2721491) 1 NC_003228.3 hypothetical protein 2721491 3285339 BF9343_2239 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211948.1 2721087 R 272559 CDS YP_211949.1 60681805 3288067 complement(2721611..2722243) 1 NC_003228.3 Similar to Pseudomonas syringae hypothetical protein PSPTO2389 SWALL:AAO55900 (EMBL:AE016864) (260 aa) fasta scores: E(): 1.9e-14, 35.36% id in 164 aa; putative lipoprotein 2722243 3288067 BF9343_2240 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211949.1 2721611 R 272559 CDS YP_211950.1 60681806 3285205 complement(2722611..2722847) 1 NC_003228.3 hypothetical protein 2722847 3285205 BF9343_2241 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211950.1 2722611 R 272559 CDS YP_211951.1 60681807 3285126 complement(2722858..2723031) 1 NC_003228.3 hypothetical protein 2723031 3285126 BF9343_2242 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211951.1 2722858 R 272559 CDS YP_211952.1 60681808 3285396 complement(2723069..2723332) 1 NC_003228.3 hypothetical protein 2723332 3285396 BF9343_2243 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211952.1 2723069 R 272559 CDS YP_211953.1 60681809 3285168 complement(2723598..2723987) 1 NC_003228.3 Very low similarity in its N-terminal region to the C-terminal region of Vibrio cholerae transcriptional regulator, LuxR family VCA0888 SWALL:Q9KL60 (EMBL:AE004416) (253 aa) fasta scores: E(): 0.079, 41.81% id in 55 aa, and of Vibrio parahaemolyticus transcriptional regulator, LuxR family VP1907 SWALL:BAC60170 (EMBL:AP005079) (212 aa) fasta scores: E(): 0.46, 36.2% id in 58 aa; putative DNA binding protein 2723987 3285168 BF9343_2244 Bacteroides fragilis NCTC 9343 putative DNA binding protein YP_211953.1 2723598 R 272559 CDS YP_211954.1 60681810 3285297 complement(2723984..2724235) 1 NC_003228.3 hypothetical protein 2724235 3285297 BF9343_2245 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211954.1 2723984 R 272559 CDS YP_211955.1 60681811 3285282 2724400..2724741 1 NC_003228.3 hypothetical protein 2724741 3285282 BF9343_2246 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211955.1 2724400 D 272559 CDS YP_211956.1 60681812 3285290 2725914..2726651 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0766 SWALL:AAO75873 (EMBL:AE016929) (267 aa) fasta scores: E(): 6.9e-47, 55.91% id in 245 aa; hypothetical protein 2726651 3285290 BF9343_2249 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211956.1 2725914 D 272559 CDS YP_211957.1 60681813 3285365 2726769..2727752 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative para-aminobenzoate synthase component I BT0767 SWALL:AAO75874 (EMBL:AE016929) (330 aa) fasta scores: E(): 1.9e-88, 65.75% id in 330 aa, and to Escherichia coli para-aminobenzoate synthase component I PabB or B1812 SWALL:PABB_ECOLI (SWALL:P05041) (453 aa) fasta scores: E(): 3.4e-16, 32.71% id in 269 aa; putative para-aminobenzoate synthase component I 2727752 3285365 BF9343_2250 Bacteroides fragilis NCTC 9343 putative para-aminobenzoate synthase component I YP_211957.1 2726769 D 272559 CDS YP_211958.1 60681814 3285499 2727736..2728332 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative para-aminobenzoate synthase component I BT0768 SWALL:AAO75875 (EMBL:AE016929) (198 aa) fasta scores: E(): 9.6e-42, 56.18% id in 194 aa, and to Pasteurella multocida hypothetical protein PM1465 SWALL:Q9CKY5 (EMBL:AE006183) (193 aa) fasta scores: E(): 7.8e-17, 30.64% id in 186 aa; hypothetical protein 2728332 3285499 BF9343_2251 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211958.1 2727736 D 272559 CDS YP_211959.1 60681815 3285314 2728620..2729288 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0769 SWALL:AAO75876 (EMBL:AE016929) (223 aa) fasta scores: E(): 1.1e-72, 78.63% id in 220 aa, and to Leptospira interrogans conserved hypothetical protein LA2031 SWALL:Q8F4L0 (EMBL:AE011375) (232 aa) fasta scores: E(): 8.5e-21, 34.12% id in 211 aa; hypothetical protein 2729288 3285314 BF9343_2252 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211959.1 2728620 D 272559 CDS YP_211960.1 60681816 3285245 2729357..2731369 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron 1,4-alpha-glucan branching enzyme BT0771 SWALL:AAO75878 (EMBL:AE016929) (670 aa) fasta scores: E(): 0, 88.95% id in 670 aa, and the rest of the database matches are to eukaryotic organisms such as Neurospora crassa probable branching enzyme B8bB0.330 SWALL:Q9P5P3 (EMBL:AL355933) (741 aa) fasta scores: E(): 2.4e-122, 48.04% id in 666 aa; putative hydrolase 2731369 3285245 BF9343_2253 Bacteroides fragilis NCTC 9343 putative hydrolase YP_211960.1 2729357 D 272559 CDS YP_211961.1 60681817 3285374 complement(2731445..2733142) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron alpha-amylase 3 BT0773 SWALL:Q8A9P2 (EMBL:AE016929) (565 aa) fasta scores: E(): 6.1e-212, 87.25% id in 565 aa, and to Vibrio vulnificus glycosidase VV21231 SWALL:Q8D4Q8 (EMBL:AE016812) (596 aa) fasta scores: E(): 6.4e-35, 45.85% id in 567 aa; putative amylase 2733142 3285374 BF9343_2254 Bacteroides fragilis NCTC 9343 putative amylase YP_211961.1 2731445 R 272559 CDS YP_211962.1 60681818 3285165 complement(2733153..2734211) 1 NC_003228.3 Similar to Pasteurella multocida hypothetical protein PM0652 SWALL:Q9CMZ8 (EMBL:AE006101) (350 aa) fasta scores: E(): 5.2e-57, 45.74% id in 341 aa, and to Escherichia coli hypothetical oxidoreductase YdgJ or B1624 SWALL:YDGJ_ECOLI (SWALL:P77376) (346 aa) fasta scores: E(): 1.5e-44, 40.29% id in 345 aa; putative oxidoreductase 2734211 3285165 BF9343_2255 Bacteroides fragilis NCTC 9343 putative oxidoreductase YP_211962.1 2733153 R 272559 CDS YP_211963.1 60681819 3285390 complement(2734202..2735008) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved protein with a conserved patatin-like phospholipase domain BT0774 SWALL:AAO75881 (EMBL:AE016929) (268 aa) fasta scores: E(): 2e-85, 78.73% id in 268 aa, and to Bacillus subtilis hypothetical protein YlbK SWALL:YLBK_BACSU (SWALL:O34731) (260 aa) fasta scores: E(): 3.4e-19, 29.68% id in 256 aa; hypothetical protein 2735008 3285390 BF9343_2256 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211963.1 2734202 R 272559 CDS YP_211964.1 60681820 3285849 complement(2735178..2736392) 1 NC_003228.3 Similar to Escherichia coli fosmidomycin resistance protein Fsr or B0479 SWALL:FSR_ECOLI (SWALL:P52067) (406 aa) fasta scores: E(): 3.6e-85, 57.55% id in 384 aa, and to Bacteroides thetaiotaomicron putative membrane efflux protein BT1438 SWALL:AAO76545 (EMBL:AE016931) (472 aa) fasta scores: E(): 1.5e-125, 82.11% id in 397 aa; putative fosmidomycin resistance protein 2736392 fsr 3285849 fsr Bacteroides fragilis NCTC 9343 putative fosmidomycin resistance protein YP_211964.1 2735178 R 272559 CDS YP_211965.1 60681821 3285324 2736610..2738115 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron glutamine synthetase I BT0785 SWALL:AAO75892 (EMBL:AE016929) (500 aa) fasta scores: E(): 6.8e-185, 88.2% id in 500 aa, and to Bacillus subtilis glutamine synthetase GlnA SWALL:GLNA_BACSU (SWALL:P12425) (443 aa) fasta scores: E(): 1.3e-25, 27.56% id in 439 aa; putative glutamine synthetase I 2738115 3285324 BF9343_2258 Bacteroides fragilis NCTC 9343 putative glutamine synthetase I YP_211965.1 2736610 D 272559 CDS YP_211966.1 60681822 3285320 2738201..2738782 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative cAMP-binding domain-containing regulatory protein BT2187 SWALL:AAO77294 (EMBL:AE016935) (189 aa) fasta scores: E(): 1.1e-52, 65.07% id in 189 aa, and to Anabaena sp. hypothetical protein ALLl4541 SWALL:Q8YNM3 (EMBL:AP003596) (193 aa) fasta scores: E(): 1.7e-13, 32.46% id in 191 aa; conserved putative DNA-binding hypothetical protein 2738782 3285320 BF9343_2259 Bacteroides fragilis NCTC 9343 conserved putative DNA-binding hypothetical protein YP_211966.1 2738201 D 272559 CDS YP_211967.1 60681823 3285358 2738854..2739567 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative oxidoreductase BT2188 SWALL:AAO77295 (EMBL:AE016935) (238 aa) fasta scores: E(): 1.9e-62, 64.7% id in 238 aa, and to Clostridium acetobutylicum oxidoreductase CAP0051 SWALL:Q97TP7 (EMBL:AE001438) (240 aa) fasta scores: E(): 9.1e-29, 40% id in 240 aa; putative oxidoreductase 2739567 3285358 BF9343_2260 Bacteroides fragilis NCTC 9343 putative oxidoreductase YP_211967.1 2738854 D 272559 CDS YP_211968.1 60681824 3285437 2739712..2740302 1 NC_003228.3 Low similarity to Shewanella oneidensis PAP2 family protein SO3857 SWALL:Q8EAP0 (EMBL:AE015818) (175 aa) fasta scores: E(): 1.9e-07, 36.13% id in 119 aa, and to Vibrio vulnificus membrane-associated phospholipid phosphatase VVv20048 SWALL:Q8D7V0 (EMBL:AE016808) (201 aa) fasta scores: E(): 8.9e-06, 36.03% id in 111 aa; hypothetical protein 2740302 3285437 BF9343_2261 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211968.1 2739712 D 272559 CDS YP_211969.1 60681825 3285370 complement(2740383..2740592) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2368 SWALL:AAO77475 (EMBL:AE016935) (74 aa) fasta scores: E(): 1.2e-11, 56.71% id in 67 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4384 SWALL:AAO79489 (EMBL:AE016945) (74 aa) fasta scores: E(): 3.1e-10, 53.84% id in 65 aa; hypothetical protein 2740592 3285370 BF9343_2262 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211969.1 2740383 R 272559 CDS YP_211970.1 60681826 3285450 2740609..2740824 1 NC_003228.3 hypothetical protein 2740824 3285450 BF9343_2263 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211970.1 2740609 D 272559 CDS YP_211971.1 60681827 3285392 2741026..2741136 1 NC_003228.3 hypothetical protein 2741136 3285392 BF9343_2264 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211971.1 2741026 D 272559 CDS YP_211972.1 60681828 3285316 complement(2741257..2741493) 1 NC_003228.3 hypothetical protein 2741493 3285316 BF9343_2265 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211972.1 2741257 R 272559 CDS YP_211973.1 60681829 3285143 complement(2741490..2741660) 1 NC_003228.3 hypothetical protein 2741660 3285143 BF9343_2266 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211973.1 2741490 R 272559 CDS YP_211974.1 60681830 3287156 complement(2741702..2742571) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 succinyl-CoA synthetase alpha chain SucD or B0729 or C0806 or Z0883 or ECS0754 SWALL:SUCD_ECOLI (SWALL:P07459) (288 aa) fasta scores: E(): 1.6e-57, 58.24% id in 285 aa, and to Bacillus subtilis succinyl-CoA synthetase alpha chain SucD SWALL:SUCD_BACSU (SWALL:P80865) (299 aa) fasta scores: E(): 6.5e-60, 60.21% id in 284 aa; succinyl-CoA synthetase alpha chain 2742571 sucD 3287156 sucD Bacteroides fragilis NCTC 9343 succinyl-CoA synthetase alpha chain YP_211974.1 2741702 R 272559 CDS YP_211975.1 60681831 3287365 complement(2742568..2743716) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri succinyl-CoA synthetase beta chain SucC or B0728 or C0805 or Z0882 or ECS0753 or SF0569 SWALL:SUCC_ECOLI (SWALL:P07460) (388 aa) fasta scores: E(): 2.8e-55, 39.89% id in 386 aa, and to Bacteroides thetaiotaomicron succinyl-CoA synthetase beta chain BT0788 SWALL:AAO75895 (EMBL:AE016929) (376 aa) fasta scores: E(): 2.8e-109, 76.33% id in 376 aa; succinyl-CoA synthetase beta chain 2743716 sucC 3287365 sucC Bacteroides fragilis NCTC 9343 succinyl-CoA synthetase beta chain YP_211975.1 2742568 R 272559 CDS YP_211976.1 60681832 3285155 complement(2743922..2744809) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or B1092 or C1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 1.9e-36, 42.51% id in 294 aa, and to Bacillus subtilis malonyl CoA-acyl carrier protein transacylase FabD SWALL:FABD_BACSU (SWALL:P71019) (317 aa) fasta scores: E(): 1.2e-42, 45.26% id in 285 aa; malonyl CoA-acyl carrier protein transacylase 2744809 fabD 3285155 fabD Bacteroides fragilis NCTC 9343 malonyl CoA-acyl carrier protein transacylase YP_211976.1 2743922 R 272559 CDS YP_211977.1 60681833 3287497 complement(2744913..2745746) 1 NC_003228.3 Similar to Rhizobium meliloti phosphomethylpyrimidine kinase ThiD or RB1087 or SMB20962 SWALL:THID_RHIME (SWALL:P56904) (266 aa) fasta scores: E(): 2.9e-41, 51.11% id in 270 aa, and to Escherichia coli phosphomethylpyrimidine kinase ThiD or B2103 SWALL:THID_ECOLI (SWALL:P76422) (266 aa) fasta scores: E(): 3.2e-33, 42.85% id in 259 aa; phosphomethylpyrimidine kinase 2745746 thiD 3287497 thiD Bacteroides fragilis NCTC 9343 phosphomethylpyrimidine kinase YP_211977.1 2744913 R 272559 CDS YP_211978.1 60681834 3285156 2746088..2746819 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0791 SWALL:AAO75898 (EMBL:AE016929) (243 aa) fasta scores: E(): 3.4e-85, 87.65% id in 243 aa, and to Anabaena sp. hypothetical protein ALR2484 SWALL:Q8YU70 (EMBL:AP003589) (248 aa) fasta scores: E(): 1.8e-10, 29.23% id in 236 aa; hypothetical protein 2746819 3285156 BF9343_2271 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211978.1 2746088 D 272559 CDS YP_211979.1 60681835 3285166 2746871..2748376 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron xylulose kinase BT0792 SWALL:AAO75899 (EMBL:AE016929) (497 aa) fasta scores: E(): 4.3e-164, 81.65% id in 496 aa, and to Bacillus subtilis xylulose kinase XylB SWALL:XYLB_BACSU (SWALL:P39211) (499 aa) fasta scores: E(): 3.3e-32, 28.82% id in 517 aa; putative xylulose kinase 2748376 3285166 BF9343_2272 Bacteroides fragilis NCTC 9343 putative xylulose kinase YP_211979.1 2746871 D 272559 CDS YP_211980.1 60681836 3285220 2748466..2749785 1 NC_003228.3 Similar to Escherichia coli xylose isomerase XylA or B3565 SWALL:XYLA_ECOLI (SWALL:P00944) (440 aa) fasta scores: E(): 1.6e-84, 47.58% id in 435 aa, and to Bacteroides thetaiotaomicron xylose isomerase BT0793 SWALL:AAO75900 (EMBL:AE016929) (438 aa) fasta scores: E(): 2.3e-164, 90.38% id in 437 aa; putative xylose isomerase 2749785 3285220 BF9343_2273 Bacteroides fragilis NCTC 9343 putative xylose isomerase YP_211980.1 2748466 D 272559 CDS YP_211981.1 60681837 3285312 2749850..2751298 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 D-xylose-proton symporter XylE or B4031 or Z5629 or ECS5014 SWALL:XYLE_ECOLI (SWALL:P09098) (491 aa) fasta scores: E(): 1.5e-72, 49.69% id in 489 aa, and to Bacteroides thetaiotaomicron D-xylose-proton symporter BT0794 SWALL:AAO75901 (EMBL:AE016929) (484 aa) fasta scores: E(): 2.5e-179, 91.66% id in 480 aa; putative sugar-transport membrane protein 2751298 3285312 BF9343_2274 Bacteroides fragilis NCTC 9343 putative sugar-transport membrane protein YP_211981.1 2749850 D 272559 CDS YP_211982.1 60681838 3285306 complement(2751853..2753061) 1 NC_003228.3 Similar to Caulobacter crescentus type I phosphodiesterase/nucleotide pyrophosphatase family protein CC1277 SWALL:Q9A8S4 (EMBL:AE005802) (451 aa) fasta scores: E(): 1.4e-43, 35.25% id in 400 aa, and to Xylella fastidiosa phosphodiesterase-nucleotide pyrophosphatase precursor EnpP or PD1976 SWALL:AAO29805 (EMBL:AE012560) (433 aa) fasta scores: E(): 1.4e-33, 32.9% id in 392 aa; putative phosphodiesterase-nucleotide pyrophosphatase 2753061 3285306 BF9343_2275 Bacteroides fragilis NCTC 9343 putative phosphodiesterase-nucleotide pyrophosphatase YP_211982.1 2751853 R 272559 CDS YP_211983.1 60681839 3288217 2753167..2754705 1 NC_003228.3 Similar to Leptospira interrogans carbon-nitrogen hydrolase LA3462 SWALL:Q8F0N0 (EMBL:AE011503) (527 aa) fasta scores: E(): 1.1e-111, 54.67% id in 503 aa, and to Bacillus subtilis hypothetical protein YhcX SWALL:YHCX_BACSU (SWALL:P54608) (513 aa) fasta scores: E(): 7.9e-95, 44.33% id in 512 aa; putative carbon-nitrogen hydrolase 2754705 3288217 BF9343_2276 Bacteroides fragilis NCTC 9343 putative carbon-nitrogen hydrolase YP_211983.1 2753167 D 272559 CDS YP_211984.1 60681840 3285279 2754824..2755456 1 NC_003228.3 Similar to Hordeum vulgare 2-cys peroxiredoxin Bas1, chloroplast precursor SWALL:BAS1_HORVU (SWALL:Q96468) (210 aa) fasta scores: E(): 5.3e-21, 48.78% id in 205 aa, and to Bacteroides fragilis thioredoxin peroxidase Tpx SWALL:Q938I6 (EMBL:AY050657) (210 aa) fasta scores: E(): 7.6e-87, 100% id in 210 aa, and to; putative thioredoxin peroxidase 2755456 3285279 BF9343_2277 Bacteroides fragilis NCTC 9343 putative thioredoxin peroxidase YP_211984.1 2754824 D 272559 CDS YP_211985.1 60681841 3289316 2755667..2755912 1 NC_003228.3 Almost identical to the previously sequenced Bacteroides fragilis RNA binding protein Rbp SWALL:Q938I5 (EMBL:AY050657) (80 aa) fasta scores: E(): 1.3e-25, 97.4% id in 77 aa, and similar to Synechocystis sp. putative RNA-binding protein RrbA or SLL0517 SWALL:RBPA_SYNY3 (SWALL:Q57014) (101 aa) fasta scores: E(): 7.1e-11, 51.25% id in 80 aa; RNA binding protein 2755912 rbp 3289316 rbp Bacteroides fragilis NCTC 9343 RNA binding protein YP_211985.1 2755667 D 272559 CDS YP_211986.1 60681842 3289160 complement(2755986..2757377) 1 NC_003228.3 Almost identical to the previously sequenced Bacteroides fragilis cytochrome-C peroxidase Ccp SWALL:Q938I4 (EMBL:AY050657) (464 aa) fasta scores: E(): 2.6e-174, 96.98% id in 464 aa, and similar to Escherichia coli probable cytochrome C peroxidase YhjA or B3518 SWALL:YHJA_ECOLI (SWALL:P37197) (465 aa) fasta scores: E(): 1.2e-77, 49.87% id in 413 aa, and to Pseudomonas aeruginosa cytochrome C551 peroxidase precursor CcpA or PA4587 SWALL:CCPR_PSEAE (SWALL:P14532) (346 aa) fasta scores: E(): 1.8e-35, 39.81% id in 319 aa; cytochrome-C peroxidase 2757377 ccp 3289160 ccp Bacteroides fragilis NCTC 9343 cytochrome-C peroxidase YP_211986.1 2755986 R 272559 CDS YP_211987.1 60681843 3285483 complement(2757393..2758178) 1 NC_003228.3 Similar to Galdieria sulphuraria cytochrome C biogenesis protein CcsA SWALL:CCSA_GALSU (SWALL:P31564) (306 aa) fasta scores: E(): 9.7e-15, 28.87% id in 284 aa, and to Bacteroides thetaiotaomicron cytochrome C biogenesis protein BT1605 SWALL:AAO76712 (EMBL:AE016932) (261 aa) fasta scores: E(): 4.1e-96, 85.82% id in 261 aa; putative cytochrome C biogenesis-related protein 2758178 3285483 BF9343_2280 Bacteroides fragilis NCTC 9343 putative cytochrome C biogenesis-related protein YP_211987.1 2757393 R 272559 CDS YP_211988.1 60681844 3285383 complement(2758162..2759049) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1604 SWALL:AAO76711 (EMBL:AE016932) (292 aa) fasta scores: E(): 4.4e-79, 67.47% id in 289 aa; hypothetical protein 2759049 3285383 BF9343_2281 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211988.1 2758162 R 272559 CDS YP_211989.1 60681845 3285453 2759309..2760574 1 NC_003228.3 hypothetical protein 2760574 3285453 BF9343_2282 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211989.1 2759309 D 272559 CDS YP_211990.1 60681846 3285356 complement(2760707..2761756) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0805 SWALL:AAO75912 (EMBL:AE016929) (349 aa) fasta scores: E(): 1.7e-108, 77.65% id in 349 aa, and to Escherichia coli hypothetical protein YhiM or B3491 SWALL:YHIM_ECOLI (SWALL:P37630) (364 aa) fasta scores: E(): 4.6e-56, 45.89% id in 353 aa; hypothetical protein 2761756 3285356 BF9343_2283 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211990.1 2760707 R 272559 CDS YP_211991.1 60681847 3289145 2761981..2765406 1 NC_003228.3 Similar to Methanobacterium thermoautotrophicum isoleucyl-tRNA synthetase IleS SWALL:SYI_METTM (SWALL:P26499) (1044 aa) fasta scores: E(): 1.8e-56, 32.12% id in 1133 aa, and to Bacteroides thetaiotaomicron isoleucyl-tRNA synthetase BT0806 SWALL:AAO75913 (EMBL:AE016929) (1162 aa) fasta scores: E(): 0, 88.47% id in 1163 aa; isoleucyl-tRNA synthetase 2765406 ileS 3289145 ileS Bacteroides fragilis NCTC 9343 isoleucyl-tRNA synthetase YP_211991.1 2761981 D 272559 CDS YP_211992.1 60681848 3285428 2765441..2765821 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron DnaK suppressor protein, putative BT0807 SWALL:AAO75914 (EMBL:AE016929) (126 aa) fasta scores: E(): 3.8e-43, 97.61% id in 126 aa, and to Bradyrhizobium japonicum DnaK deletion suppressor protein DksA or BLL5834 SWALL:BAC51099 (EMBL:AP005956) (121 aa) fasta scores: E(): 9.1e-05, 36.13% id in 119 aa; putative regulatory protein 2765821 3285428 BF9343_2285 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_211992.1 2765441 D 272559 CDS YP_211993.1 60681849 3285185 2765939..2766571 1 NC_003228.3 Similar to Staphylococcus carnosus lipoprotein signal peptidase LspA or Lsp SWALL:LSPA_STACA (SWALL:Q59835) (159 aa) fasta scores: E(): 6e-05, 33.62% id in 113 aa, and to Clostridium tetani lipoprotein signal peptidase CTC01615 SWALL:AAO36158 (EMBL:AE015941) (156 aa) fasta scores: E(): 2.1e-06, 31.28% id in 195 aa; putative signal peptidase 2766571 3285185 BF9343_2286 Bacteroides fragilis NCTC 9343 putative signal peptidase YP_211993.1 2765939 D 272559 CDS YP_211994.1 60681850 3285474 2766582..2767628 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0809 SWALL:AAO75916 (EMBL:AE016929) (360 aa) fasta scores: E(): 1.3e-60, 53.74% id in 361 aa; putative lipoprotein 2767628 3285474 BF9343_2287 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_211994.1 2766582 D 272559 CDS YP_211995.1 60681851 3285321 2767637..2767966 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0810 SWALL:AAO75917 (EMBL:AE016929) (125 aa) fasta scores: E(): 2.6e-10, 42.4% id in 125 aa. Note: This CDS overlaps in its C-terminal region on 14 residues with BF2372; hypothetical protein 2767966 3285321 BF9343_2288 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211995.1 2767637 D 272559 CDS YP_211996.1 60681852 3285468 complement(2767920..2768681) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative tRNA/rRNA methyltransferase BT0811 SWALL:AAO75918 (EMBL:AE016929) (252 aa) fasta scores: E(): 2.2e-78, 77.2% id in 250 aa, and to Vibrio parahaemolyticus RNA methyltransferase, TrmH family VP0954 SWALL:BAC59217 (EMBL:AP005076) (244 aa) fasta scores: E(): 1.7e-30, 40.4% id in 250 aa; putative tRNA/rRNA methyltransferase 2768681 3285468 BF9343_2289 Bacteroides fragilis NCTC 9343 putative tRNA/rRNA methyltransferase YP_211996.1 2767920 R 272559 CDS YP_211997.1 60681853 3285187 2769052..2769564 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TonB BT2665 SWALL:AAO77772 (EMBL:AE016937) (270 aa) fasta scores: E(): 3e-15, 37.5% id in 152 aa, and to Bacteroides thetaiotaomicron TonB BT3896 SWALL:AAO79001 (EMBL:AE016942) (285 aa) fasta scores: E(): 1.2e-13, 33.73% id in 166 aa; hypothetical protein 2769564 3285187 BF9343_2290 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211997.1 2769052 D 272559 CDS YP_211998.1 60681854 3285545 2769686..2771998 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative outer membrane protein BT0814 SWALL:AAO75921 (EMBL:AE016929) (772 aa) fasta scores: E(): 0, 76.06% id in 773 aa, and to Chlorobium tepidum hypothetical protein CT1669 SWALL:Q8KBW3 (EMBL:AE012922) (743 aa) fasta scores: E(): 7.6e-15, 24.18% id in 678 aa; putative surface membrane protein 2771998 3285545 BF9343_2291 Bacteroides fragilis NCTC 9343 putative surface membrane protein YP_211998.1 2769686 D 272559 CDS YP_211999.1 60681855 3285277 complement(2772087..2772641) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0815 SWALL:AAO75922 (EMBL:AE016929) (183 aa) fasta scores: E(): 4e-56, 84.23% id in 184 aa; hypothetical protein 2772641 3285277 BF9343_2292 Bacteroides fragilis NCTC 9343 hypothetical protein YP_211999.1 2772087 R 272559 CDS YP_212000.1 60681856 3285149 complement(2772763..2773200) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0816 SWALL:AAO75923 (EMBL:AE016929) (145 aa) fasta scores: E(): 8.5e-45, 74.48% id in 145 aa, and to Neisseria meningitidis hypothetical protein NMB2140 SWALL:Q9JXB1 (EMBL:AE002562) (149 aa) fasta scores: E(): 5.1e-07, 24.62% id in 134 aa; hypothetical protein 2773200 3285149 BF9343_2293 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212000.1 2772763 R 272559 CDS YP_212001.1 60681857 3285219 complement(2773749..2774276) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1784 SWALL:AAO76891 (EMBL:AE016933) (173 aa) fasta scores: E(): 1.3e-49, 73.71% id in 175 aa; hypothetical protein 2774276 3285219 BF9343_2294 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212001.1 2773749 R 272559 CDS YP_212002.1 60681858 3285215 2775461..2776603 1 NC_003228.3 Similar to Xanthomonas campestris polyphosphate-selective porin O OprO or XCC3347 SWALL:Q8P5J4 (EMBL:AE012453) (389 aa) fasta scores: E(): 2.3e-14, 24.11% id in 369 aa, and to Xylella fastidiosa polyphosphate-selective porin O OprO or PD0270 SWALL:AAO28156 (EMBL:AE012554) (389 aa) fasta scores: E(): 7.1e-12, 24.71% id in 259 aa; hypothetical protein 2776603 3285215 BF9343_2295 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212002.1 2775461 D 272559 CDS YP_212003.1 60681859 3288154 complement(2776761..2777972) 1 NC_003228.3 Similar to Enterococcus sp. 130, Staphylococcus aureus, Streptococcus intermedius, Streptococcus salivarius, Streptococcus sp. 6, and Streptococcus pneumoniae macrolide efflux protein E MefA or MefE SWALL:P95835 (EMBL:AY071835) (405 aa) fasta scores: E(): 8.5e-60, 42.6% id in 399 aa, and to Streptococcus pneumoniae macrolide-efflux pump MefE SWALL:Q9RHW1 (EMBL:AB011259) (402 aa) fasta scores: E(): 1.1e-59, 42.71% id in 398 aa; hypothetical protein 2777972 3288154 BF9343_2296 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212003.1 2776761 R 272559 CDS YP_212004.1 60681860 3285508 complement(2778389..2779192) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative metallo-beta-lactamase superfamily hydrolase BT0822 SWALL:Q8A9J3 (EMBL:AE016929) (267 aa) fasta scores: E(): 8.5e-97, 87.64% id in 267 aa, and to Bacillus subtilis function unknown YycJ SWALL:Q45611 (EMBL:D78193) (268 aa) fasta scores: E(): 5.1e-28, 33.95% id in 268 aa; putative metallo-beta-lactamase superfamily protein 2779192 3285508 BF9343_2297 Bacteroides fragilis NCTC 9343 putative metallo-beta-lactamase superfamily protein YP_212004.1 2778389 R 272559 CDS YP_212005.1 60681861 3285179 complement(2779271..2780659) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative permease BT0821 SWALL:AAO75928 (EMBL:AE016929) (462 aa) fasta scores: E(): 3.7e-163, 87.2% id in 461 aa, and to Leptospira interrogans putative peptide transporter LA2414 SWALL:Q8F3I9 (EMBL:AE011409) (434 aa) fasta scores: E(): 6.8e-06, 24.47% id in 429 aa; putative transport-related membrane protein 2780659 3285179 BF9343_2298 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_212005.1 2779271 R 272559 CDS YP_212006.1 60681862 3287082 complement(2780810..2782216) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri uronate isomerase UxaC or B3092 or C3850 or SF3132 SWALL:UXAC_ECOLI (SWALL:P42607) (470 aa) fasta scores: E(): 1.9e-105, 55.55% id in 468 aa, and to Bacteroides thetaiotaomicron uronate isomerase BT0823 SWALL:AAO75930 (EMBL:AE016929) (482 aa) fasta scores: E(): 1.5e-176, 87.39% id in 468 aa; uronate isomerase 2782216 uxaC 3287082 uxaC Bacteroides fragilis NCTC 9343 uronate isomerase YP_212006.1 2780810 R 272559 CDS YP_212007.1 60681863 3285217 complement(2782608..2783141) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0826 SWALL:AAO75933 (EMBL:AE016929) (177 aa) fasta scores: E(): 1.5e-58, 84.74% id in 177 aa; hypothetical protein 2783141 3285217 BF9343_2300 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212007.1 2782608 R 272559 CDS YP_212008.1 60681864 3285547 complement(2783152..2784213) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0827 SWALL:AAO75934 (EMBL:AE016929) (365 aa) fasta scores: E(): 4e-61, 60.59% id in 368 aa; hypothetical protein 2784213 3285547 BF9343_2301 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212008.1 2783152 R 272559 CDS YP_212009.1 60681865 3287976 2784372..2784920 1 NC_003228.3 Similar to Shigella flexneri dTDP-4-dehydrorhamnose 3,5-epimerase RfbC or RmlC or SF2101 SWALL:RFBC_SHIFL (SWALL:P37780) (181 aa) fasta scores: E(): 9.4e-36, 53.84% id in 182 aa, and to Bacteroides thetaiotaomicron dTDP-4-dehydrorhamnose 3,5-epimerase BT0828 SWALL:AAO75935 (EMBL:AE016929) (182 aa) fasta scores: E(): 6.9e-55, 73.62% id in 182 aa; putative LPS biosynthesis related dTDP-4-dehydrorhamnose 3,5-epimerase 2784920 rfbC2 3287976 rfbC2 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related dTDP-4-dehydrorhamnose 3,5-epimerase YP_212009.1 2784372 D 272559 CDS YP_212010.1 60681866 3289341 2784944..2786257 1 NC_003228.3 Similar to Rhizobium meliloti UDP-glucose 6-dehydrogenase RkpK or R01082 or SMC02641 SWALL:UDG_RHIME (SWALL:O54068) (437 aa) fasta scores: E(): 5.1e-73, 47.95% id in 440 aa, and to Bacteroides thetaiotaomicron UDP-glucose 6-dehydrogenase BT0829 SWALL:AAO75936 (EMBL:AE016929) (437 aa) fasta scores: E(): 8.4e-149, 88.55% id in 437 aa, and to Pseudomonas aeruginosa UDP-glucose 6-dehydrogenase Udg or Ugd or PA2022 SWALL:UDG_PSEAE (SWALL:O86422) (453 aa) fasta scores: E(): 5.3e-83, 52.71% id in 442 aa; UDP-glucose 6-dehydrogenase 2786257 rkpK 3289341 rkpK Bacteroides fragilis NCTC 9343 UDP-glucose 6-dehydrogenase YP_212010.1 2784944 D 272559 CDS YP_212011.1 60681867 3285272 2786381..2787202 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0830 SWALL:AAO75937 (EMBL:AE016929) (265 aa) fasta scores: E(): 6.1e-70, 66.91% id in 266 aa; putative lipoprotein 2787202 3285272 BF9343_2304 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212011.1 2786381 D 272559 CDS YP_212012.1 60681868 3289298 complement(2787273..2788529) 1 NC_003228.3 Similar to Escherichia coli putative ATP-dependent RNA helicase RhlE or B0797 SWALL:RHLE_ECOLI (SWALL:P25888) (454 aa) fasta scores: E(): 2.5e-48, 38.47% id in 421 aa, and to Bacteroides thetaiotaomicron ATP-dependent RNA helicase BT0831 SWALL:AAO75938 (EMBL:AE016929) (422 aa) fasta scores: E(): 1.5e-134, 88.46% id in 416 aa; putative ATP-dependent RNA helicase 2788529 rhlE 3289298 rhlE Bacteroides fragilis NCTC 9343 putative ATP-dependent RNA helicase YP_212012.1 2787273 R 272559 CDS YP_212013.1 60681869 3285137 complement(2788609..2789832) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative phosphoserine phosphatase BT0832 SWALL:AAO75939 (EMBL:AE016929) (409 aa) fasta scores: E(): 4.9e-130, 90.22% id in 409 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphoserine phosphatase SerB or B4388 or Z5989 or ECS5346 or SF4420 SWALL:SERB_ECOLI (SWALL:P06862) (322 aa) fasta scores: E(): 3.7e-34, 48.29% id in 234 aa; putative phosphoserine phosphatase 2789832 3285137 BF9343_2306 Bacteroides fragilis NCTC 9343 putative phosphoserine phosphatase YP_212013.1 2788609 R 272559 CDS YP_212014.1 60681870 3285201 2790104..2790613 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0833 SWALL:AAO75940 (EMBL:AE016929) (168 aa) fasta scores: E(): 2.1e-48, 81.81% id in 165 aa, and to Oceanobacillus iheyensis cytochrome C biogenesis OB0852 SWALL:Q8CVA5 (EMBL:AP004596) (163 aa) fasta scores: E(): 3e-05, 25.98% id in 177 aa; hypothetical protein 2790613 3285201 BF9343_2307 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212014.1 2790104 D 272559 CDS YP_212015.1 60681871 3285113 complement(2790779..2791876) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0834 SWALL:AAO75941 (EMBL:AE016929) (365 aa) fasta scores: E(): 4.6e-117, 82.74% id in 365 aa, and to Fusobacterium nucleatum hypothetical membrane-spanning protein FN1030 SWALL:Q8RER6 (EMBL:AE010610) (363 aa) fasta scores: E(): 2.1e-20, 26.84% id in 365 aa; hypothetical protein 2791876 3285113 BF9343_2308 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212015.1 2790779 R 272559 CDS YP_212016.1 60681872 3287247 complement(2791881..2793011) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 queuine tRNA-ribosyltransferase Tgt or B0406 or C0516 or Z0505 or ECS0457 SWALL:TGT_ECOLI (SWALL:P19675) (375 aa) fasta scores: E(): 1.9e-63, 47.8% id in 364 aa, and to Bacteroides thetaiotaomicron tRNA-guanine transglycosylase BT0835 SWALL:AAO75942 (EMBL:AE016929) (376 aa) fasta scores: E(): 2.8e-144, 95.47% id in 376 aa; queuine tRNA-ribosyltransferase 2793011 tgt 3287247 tgt Bacteroides fragilis NCTC 9343 queuine tRNA-ribosyltransferase YP_212016.1 2791881 R 272559 CDS YP_212017.1 60681873 3287873 complement(2793008..2795476) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 ATP-dependent protease La Lon or CapR or Deg or Muc or LopA or B0439 or C0555 SWALL:LON_ECOLI (SWALL:P08177) (784 aa) fasta scores: E(): 7.1e-115, 45.05% id in 768 aa, and to Bacteroides thetaiotaomicron ATP-dependent protease BTt0837 SWALL:AAO75944 (EMBL:AE016929) (626 aa) fasta scores: E(): 1.4e-180, 85.59% id in 618 aa; ATP-dependent protease 2795476 lon 3287873 lon Bacteroides fragilis NCTC 9343 ATP-dependent protease YP_212017.1 2793008 R 272559 CDS YP_212018.1 60681874 3285447 2795661..2796374 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative RNA methyltransferase BT0838 SWALL:AAO75945 (EMBL:AE016929) (241 aa) fasta scores: E(): 1e-59, 66.1% id in 239 aa, and to Escherichia coli hypothetical protein YfiC or B2575 SWALL:YFIC_ECOLI (SWALL:P31825) (245 aa) fasta scores: E(): 9.1e-32, 41.45% id in 234 aa; hypothetical protein 2796374 3285447 BF9343_2311 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212018.1 2795661 D 272559 CDS YP_212019.1 60681875 3285446 complement(2796621..2797151) 1 NC_003228.3 hypothetical protein 2797151 3285446 BF9343_2312 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212019.1 2796621 R 272559 CDS YP_212020.1 60681876 3285144 complement(2797312..2797677) 1 NC_003228.3 hypothetical protein 2797677 3285144 BF9343_2313 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212020.1 2797312 R 272559 CDS YP_212021.1 60681877 3285172 complement(2798121..2798507) 1 NC_003228.3 hypothetical protein 2798507 3285172 BF9343_2314 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212021.1 2798121 R 272559 CDS YP_212022.1 60681878 3285285 complement(2798514..2798948) 1 NC_003228.3 hypothetical protein 2798948 3285285 BF9343_2315 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212022.1 2798514 R 272559 CDS YP_212023.1 60681879 3285216 complement(2799032..2799598) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3031 SWALL:AAO78137 (EMBL:AE016938) (208 aa) fasta scores: E(): 1.5e-23, 48.25% id in 201 aa, and to Caulobacter crescentus hypothetical protein CC3356 SWALL:Q9A350 (EMBL:AE005997) (267 aa) fasta scores: E(): 3.5e-08, 30.3% id in 165 aa; hypothetical protein 2799598 3285216 BF9343_2316 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212023.1 2799032 R 272559 CDS YP_212024.1 60681880 3285540 complement(2799661..2800161) 1 NC_003228.3 hypothetical protein 2800161 3285540 BF9343_2317 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212024.1 2799661 R 272559 CDS YP_212025.1 60681881 3285229 2801063..2801671 1 NC_003228.3 hypothetical protein 2801671 3285229 BF9343_2319 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212025.1 2801063 D 272559 CDS YP_212026.1 60681882 3288158 2801876..2802163 1 NC_003228.3 hypothetical protein 2802163 3288158 BF9343_2320 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212026.1 2801876 D 272559 CDS YP_212027.1 60681883 3285332 2802135..2802380 1 NC_003228.3 putative lipoprotein 2802380 3285332 BF9343_2321 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212027.1 2802135 D 272559 CDS YP_212028.1 60681884 3285418 2802404..2802862 1 NC_003228.3 hypothetical protein 2802862 3285418 BF9343_2322 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212028.1 2802404 D 272559 CDS YP_212029.1 60681885 3285251 2802859..2803224 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0820 SWALL:AAO75927 (EMBL:AE016929) (139 aa) fasta scores: E(): 3.7e-11, 39.8% id in 103 aa, and to Bacteriophage SP01 ORF1 SWALL:Q38422 (EMBL:M82842) (134 aa) fasta scores: E(): 2.6e-07, 33.33% id in 117 aa; hypothetical protein 2803224 3285251 BF9343_2323 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212029.1 2802859 D 272559 CDS YP_212030.1 60681886 3285111 2803247..2803456 1 NC_003228.3 hypothetical protein 2803456 3285111 BF9343_2324 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212030.1 2803247 D 272559 CDS YP_212031.1 60681887 3285487 complement(2803506..2803802) 1 NC_003228.3 hypothetical protein 2803802 3285487 BF9343_2325 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212031.1 2803506 R 272559 CDS YP_212032.1 60681888 3285310 2803933..2804379 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1331 SWALL:AAO76438 (EMBL:AE016931) (159 aa) fasta scores: E(): 7.4e-49, 86.3% id in 146 aa; hypothetical protein 2804379 3285310 BF9343_2326 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212032.1 2803933 D 272559 CDS YP_212033.1 60681889 3285460 2804466..2804642 1 NC_003228.3 hypothetical protein 2804642 3285460 BF9343_2327 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212033.1 2804466 D 272559 CDS YP_212034.1 60681890 3285268 2804673..2805002 1 NC_003228.3 hypothetical protein 2805002 3285268 BF9343_2328 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212034.1 2804673 D 272559 CDS YP_212035.1 60681891 3285244 2805020..2805193 1 NC_003228.3 hypothetical protein 2805193 3285244 BF9343_2329 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212035.1 2805020 D 272559 CDS YP_212036.1 60681892 3285147 2805424..2805663 1 NC_003228.3 hypothetical protein 2805663 3285147 BF9343_2330 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212036.1 2805424 D 272559 CDS YP_212037.1 60681893 3287593 2805675..2805953 1 NC_003228.3 hypothetical protein 2805953 3287593 BF9343_2331 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212037.1 2805675 D 272559 CDS YP_212038.1 60681894 3285141 2806008..2806907 1 NC_003228.3 hypothetical protein 2806907 3285141 BF9343_2332 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212038.1 2806008 D 272559 CDS YP_212039.1 60681895 3287594 2806897..2807613 1 NC_003228.3 hypothetical protein 2807613 3287594 BF9343_2333 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212039.1 2806897 D 272559 CDS YP_212040.1 60681896 3288289 2807821..2808312 1 NC_003228.3 hypothetical protein 2808312 3288289 BF9343_2334 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212040.1 2807821 D 272559 CDS YP_212041.1 60681897 3287595 2808419..2808874 1 NC_003228.3 hypothetical protein 2808874 3287595 BF9343_2335 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212041.1 2808419 D 272559 CDS YP_212042.1 60681898 3285270 2808915..2809775 1 NC_003228.3 Similar to Pyrococcus furiosus protease IV PF1583 SWALL:Q8U0K4 (EMBL:AE010259) (329 aa) fasta scores: E(): 2.1e-08, 24.88% id in 225 aa, and to Methanobacterium thermoautotrophicum protease IV MTH806 SWALL:O26897 (EMBL:AE000858) (287 aa) fasta scores: E(): 2.6e-08, 26.99% id in 226 aa; putative proteinase 2809775 3285270 BF9343_2336 Bacteroides fragilis NCTC 9343 putative proteinase YP_212042.1 2808915 D 272559 CDS YP_212043.1 60681899 3287596 2809802..2812018 1 NC_003228.3 hypothetical protein 2812018 3287596 BF9343_2337 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212043.1 2809802 D 272559 CDS YP_212044.1 60681900 3287585 2812078..2812896 1 NC_003228.3 hypothetical protein 2812896 3287585 BF9343_2338 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212044.1 2812078 D 272559 CDS YP_212045.1 60681901 3285425 2813057..2813992 1 NC_003228.3 hypothetical protein 2813992 3285425 BF9343_2339 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212045.1 2813057 D 272559 CDS YP_212046.1 60681902 3287586 2814146..2814487 1 NC_003228.3 hypothetical protein 2814487 3287586 BF9343_2340 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212046.1 2814146 D 272559 CDS YP_212047.1 60681903 3287587 2814468..2815145 1 NC_003228.3 hypothetical protein 2815145 3287587 BF9343_2341 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212047.1 2814468 D 272559 CDS YP_212048.1 60681904 3287590 2815111..2816817 1 NC_003228.3 hypothetical protein 2816817 3287590 BF9343_2342 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212048.1 2815111 D 272559 CDS YP_212049.1 60681905 3287589 2817336..2817872 1 NC_003228.3 hypothetical protein 2817872 3287589 BF9343_2343 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212049.1 2817336 D 272559 CDS YP_212050.1 60681906 3287591 2817874..2818416 1 NC_003228.3 putative lipoprotein 2818416 3287591 BF9343_2344 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212050.1 2817874 D 272559 CDS YP_212051.1 60681907 3287575 2818392..2818682 1 NC_003228.3 hypothetical protein 2818682 3287575 BF9343_2345 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212051.1 2818392 D 272559 CDS YP_212052.1 60681908 3287579 2818686..2820038 1 NC_003228.3 hypothetical protein 2820038 3287579 BF9343_2346 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212052.1 2818686 D 272559 CDS YP_212053.1 60681909 3287576 2820060..2820611 1 NC_003228.3 hypothetical protein 2820611 3287576 BF9343_2347 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212053.1 2820060 D 272559 CDS YP_212054.1 60681910 3287582 2820633..2820842 1 NC_003228.3 hypothetical protein 2820842 3287582 BF9343_2348 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212054.1 2820633 D 272559 CDS YP_212055.1 60681911 3287580 2820956..2821909 1 NC_003228.3 hypothetical protein 2821909 3287580 BF9343_2349 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212055.1 2820956 D 272559 CDS YP_212056.1 60681912 3287584 2821912..2822712 1 NC_003228.3 hypothetical protein 2822712 3287584 BF9343_2350 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212056.1 2821912 D 272559 CDS YP_212057.1 60681913 3287568 2822709..2823104 1 NC_003228.3 Similar to Pseudomonas putida conserved domain protein PP2108 SWALL:AAN67722 (EMBL:AE016781) (143 aa) fasta scores: E(): 3.9e-13, 43.93% id in 132 aa; hypothetical protein 2823104 3287568 BF9343_2351 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212057.1 2822709 D 272559 CDS YP_212058.1 60681914 3287567 2823117..2823557 1 NC_003228.3 hypothetical protein 2823557 3287567 BF9343_2352 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212058.1 2823117 D 272559 CDS YP_212059.1 60681915 3287571 2823570..2824244 1 NC_003228.3 hypothetical protein 2824244 3287571 BF9343_2353 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212059.1 2823570 D 272559 CDS YP_212060.1 60681916 3287569 2824266..2828387 1 NC_003228.3 hypothetical protein 2828387 3287569 BF9343_2354 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212060.1 2824266 D 272559 CDS YP_212061.1 60681917 3287574 2828398..2830500 1 NC_003228.3 hypothetical protein 2830500 3287574 BF9343_2355 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212061.1 2828398 D 272559 CDS YP_212062.1 60681918 3287573 2830757..2831956 1 NC_003228.3 hypothetical protein 2831956 3287573 BF9343_2356 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212062.1 2830757 D 272559 CDS YP_212063.1 60681919 3287559 2832051..2832674 1 NC_003228.3 hypothetical protein 2832674 3287559 BF9343_2357 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212063.1 2832051 D 272559 CDS YP_212064.1 60681920 3287558 complement(2832727..2833353) 1 NC_003228.3 hypothetical protein 2833353 3287558 BF9343_2358 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212064.1 2832727 R 272559 CDS YP_212065.1 60681921 3287560 2833511..2833945 1 NC_003228.3 hypothetical protein 2833945 3287560 BF9343_2359 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212065.1 2833511 D 272559 CDS YP_212066.1 60681922 3287563 2834044..2834181 1 NC_003228.3 hypothetical protein 2834181 3287563 BF9343_2360 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212066.1 2834044 D 272559 CDS YP_212067.1 60681923 3287562 2834559..2834897 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0779 SWALL:AAO75886 (EMBL:AE016929) (107 aa) fasta scores: E(): 3.3e-17, 55.96% id in 109 aa; hypothetical protein 2834897 3287562 BF9343_2361 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212067.1 2834559 D 272559 CDS YP_212068.1 60681924 3288776 2834994..2835158 1 NC_003228.3 hypothetical protein 2835158 3288776 BF9343_2362 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212068.1 2834994 D 272559 CDS YP_212069.1 60681925 3287565 complement(2836070..2837314) 1 NC_003228.3 Similar to Bacteroides fragilis integrase IntN2 SWALL:Q9KHQ5 (EMBL:AF251288) (427 aa) fasta scores: E(): 8.1e-05, 23.72% id in 413 aa, and to Bacteroides thetaiotaomicron integrase protein BT4479 SWALL:AAO79584 (EMBL:AE016945) (305 aa) fasta scores: E(): 1.6e-18, 32.33% id in 300 aa; putative integrase 2837314 3287565 BF9343_2363 Bacteroides fragilis NCTC 9343 putative integrase YP_212069.1 2836070 R 272559 CDS YP_212070.1 60681926 3287151 complement(2837875..2838093) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1667 SWALL:AAO76774 (EMBL:AE016932) (70 aa) fasta scores: E(): 3.2e-08, 52.05% id in 73 aa; hypothetical protein 2838093 3287151 BF9343_2364 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212070.1 2837875 R 272559 CDS YP_212071.1 60681927 3287551 2838440..2838781 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0170 SWALL:AAO75277 (EMBL:AE016926) (117 aa) fasta scores: E(): 8.9e-28, 70.79% id in 113 aa, and to Clostridium perfringens hypothetical protein CPE0943 SWALL:Q8XLU7 (EMBL:AP003188) (114 aa) fasta scores: E(): 6.1e-12, 38.67% id in 106 aa; putative conserved membrane protein 2838781 3287551 BF9343_2366 Bacteroides fragilis NCTC 9343 putative conserved membrane protein YP_212071.1 2838440 D 272559 CDS YP_212072.1 60681928 3285254 2838850..2839023 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0854 SWALL:AAO75961 (EMBL:AE016929) (64 aa) fasta scores: E(): 3.8e-05, 50% id in 64 aa; hypothetical protein 2839023 3285254 BF9343_2367 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212072.1 2838850 D 272559 CDS YP_212073.1 60681929 3287549 complement(2839030..2840307) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BTt0855 SWALL:AAO75962 (EMBL:AE016929) (425 aa) fasta scores: E(): 7e-105, 65.09% id in 424 aa, and to Xanthomonas campestris hypothetical protein XCC0562 SWALL:Q8PCY8 (EMBL:AE012154) (397 aa) fasta scores: E(): 1.8e-14, 25.45% id in 385 aa; putative two component system histidine kinase 2840307 3287549 BF9343_2368 Bacteroides fragilis NCTC 9343 putative two component system histidine kinase YP_212073.1 2839030 R 272559 CDS YP_212074.1 60681930 3287550 complement(2840304..2841668) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 nitrogen regulation protein Nr GlnG or NtrC or GlnT or B3868 or Z5404 or ECS4790 SWALL:NTRC_ECOLI (SWALL:P06713) (469 aa) fasta scores: E(): 1.8e-43, 35.62% id in 480 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT0856 SWALL:AAO75963 (EMBL:AE016929) (458 aa) fasta scores: E(): 1.3e-142, 89.23% id in 455 aa; putative two component system response regulator 2841668 3287550 BF9343_2369 Bacteroides fragilis NCTC 9343 putative two component system response regulator YP_212074.1 2840304 R 272559 CDS YP_212075.1 60681931 3287556 2842031..2843503 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane protein TolC, putative BT0857 SWALL:AAO75964 (EMBL:AE016929) (490 aa) fasta scores: E(): 3.6e-151, 79.79% id in 490 aa, and to Vibrio cholerae outer membrane protein TolC, putative VC1565 SWALL:Q9KRS1 (EMBL:AE004234) (419 aa) fasta scores: E(): 2.4e-08, 24.5% id in 302 aa; putative exported outer membrane protein 2843503 3287556 BF9343_2370 Bacteroides fragilis NCTC 9343 putative exported outer membrane protein YP_212075.1 2842031 D 272559 CDS YP_212076.1 60681932 3287557 2843542..2844792 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0858 SWALL:AAO75965 (EMBL:AE016929) (416 aa) fasta scores: E(): 2.8e-122, 82.93% id in 416 aa, and to Yersinia pestis putative exported protein YPO1498 or Y2670 SWALL:Q8ZG22 (EMBL:AJ414148) (420 aa) fasta scores: E(): 1.1e-15, 24.94% id in 417 aa; hypothetical protein 2844792 3287557 BF9343_2371 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212076.1 2843542 D 272559 CDS YP_212077.1 60681933 3287540 2844936..2847359 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0863 SWALL:AAO75970 (EMBL:AE016929) (802 aa) fasta scores: E(): 2.7e-158, 50.06% id in 809 aa, and to Anabaena sp. hypothetical protein ALR0452 SWALL:Q8YZK5 (EMBL:AP003582) (405 aa) fasta scores: E(): 2e-08, 20.63% id in 412 aa; putative conserved membrane protein 2847359 3287540 BF9343_2372 Bacteroides fragilis NCTC 9343 putative conserved membrane protein YP_212077.1 2844936 D 272559 CDS YP_212078.1 60681934 3287553 2847509..2849854 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter permease BT0861 SWALL:AAO75968 (EMBL:AE016929) (781 aa) fasta scores: E(): 4.7e-184, 56.06% id in 783 aa, and to Yersinia pestis putative membrane protein YPO1499 SWALL:Q8ZG21 (EMBL:AJ414148) (786 aa) fasta scores: E(): 3.6e-06, 21.12% id in 800 aa; putative ABc transport system, membrane protein 2849854 3287553 BF9343_2373 Bacteroides fragilis NCTC 9343 putative ABc transport system, membrane protein YP_212078.1 2847509 D 272559 CDS YP_212079.1 60681935 3287543 2849871..2852198 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter permease BT0861 SWALL:AAO75968 (EMBL:AE016929) (781 aa) fasta scores: E(): 8.7e-125, 43.14% id in 788 aa, and to Yersinia pestis putative membrane protein YPO1499 SWALL:Q8ZG21 (EMBL:AJ414148) (786 aa) fasta scores: E(): 1.8e-06, 18.23% id in 757 aa; putative ABC transport system, membrane protein 2852198 3287543 BF9343_2374 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212079.1 2849871 D 272559 CDS YP_212080.1 60681936 3287544 2852213..2854615 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0859 SWALL:AAO75966 (EMBL:AE016929) (791 aa) fasta scores: E(): 3.7e-26, 22.87% id in 822 aa, and C-terminal region similar to the C-terminal region of Yersinia pestis putative ABC transporter ATP-binding protein YPO1365 or Y2813 SWALL:Q8ZGD7 (EMBL:AJ414148) (649 aa) fasta scores: E(): 6.2e-07, 22.77% id in 303 aa; hypothetical protein 2854615 3287544 BF9343_2375 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212080.1 2852213 D 272559 CDS YP_212081.1 60681937 3287529 2854809..2857037 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0693 SWALL:AAO75800 (EMBL:AE016928) (793 aa) fasta scores: E(): 1.4e-13, 21.19% id in 807 aa, and to Bacteroides thetaiotaomicron putative permease BT0864 SWALL:AAO75971 (EMBL:AE016929) (785 aa) fasta scores: E(): 7.8e-05, 19.89% id in 804 aa; hypothetical protein 2857037 3287529 BF9343_2376 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212081.1 2854809 D 272559 CDS YP_212082.1 60681938 3287541 2857048..2859384 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC-transporter permease protein BT0862 SWALL:AAO75969 (EMBL:AE016929) (777 aa) fasta scores: E(): 1.7e-26, 24.84% id in 825 aa, and N-terminal region similar to Bacillus thuringiensis putative ABC-transporter permease protein PBT131 SWALL:Q8KNQ9 (EMBL:AL731825) (399 aa) fasta scores: E(): 0.001, 19.6% id in 403 aa; hypothetical protein 2859384 3287541 BF9343_2377 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212082.1 2857048 D 272559 CDS YP_212083.1 60681939 3287546 2859413..2860087 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter ATP-binding protein BT0860 SWALL:AAO75967 (EMBL:AE016929) (224 aa) fasta scores: E(): 9e-75, 95.08% id in 224 aa, and to Xanthomonas axonopodis ABC transporter ATP-binding protein YcfV or XAC3639 SWALL:Q8PGH7 (EMBL:AE012014) (239 aa) fasta scores: E(): 4.2e-40, 52.99% id in 217 aa; putative ABC transport system, ATP-binding protein 2860087 3287546 BF9343_2378 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_212083.1 2859413 D 272559 CDS YP_212084.1 60681940 3287548 2860293..2860562 1 NC_003228.3 hypothetical protein 2860562 3287548 BF9343_2379 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212084.1 2860293 D 272559 CDS YP_212085.1 60681941 3287531 complement(2860810..2861994) 1 NC_003228.3 Similar to Bacillus sphaericus 8-amino-7-oxononanoate synthase BioF SWALL:BIOF_BACSH (SWALL:P22806) (389 aa) fasta scores: E(): 2.2e-57, 42.1% id in 380 aa, and to Bacteroides thetaiotaomicron 8-amino-7-oxononanoate synthase BT0870 SWALL:AAO75977 (EMBL:AE016929) (394 aa) fasta scores: E(): 1.7e-118, 75.63% id in 394 aa; putative 8-amino-7-oxononanoate synthase 2861994 3287531 BF9343_2380 Bacteroides fragilis NCTC 9343 putative 8-amino-7-oxononanoate synthase YP_212085.1 2860810 R 272559 CDS YP_212086.1 60681942 3287532 2862229..2863272 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0871 SWALL:Q8A9E4 (EMBL:AE016929) (337 aa) fasta scores: E(): 2.9e-105, 84.59% id in 331 aa, and to Listeria monocytogenes hypothetical protein LMO0774 SWALL:Q8Y8W8 (EMBL:AL591976) (309 aa) fasta scores: E(): 3.4e-18, 29.22% id in 308 aa; hypothetical protein 2863272 3287532 BF9343_2381 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212086.1 2862229 D 272559 CDS YP_212087.1 60681943 3289135 2863354..2865111 1 NC_003228.3 Similar to Bacillus subtilis aspartyl-tRNA synthetase AspS SWALL:SYD_BACSU (SWALL:O32038) (592 aa) fasta scores: E(): 2.7e-117, 50.75% id in 593 aa, and to Bacteroides thetaiotaomicron aspartyl-tRNA synthetase BT0872 SWALL:AAO75979 (EMBL:AE016929) (587 aa) fasta scores: E(): 0, 89.91% id in 585 aa; aspartyl-tRNA synthetase 2865111 aspS 3289135 aspS Bacteroides fragilis NCTC 9343 aspartyl-tRNA synthetase YP_212087.1 2863354 D 272559 CDS YP_212088.1 60681944 3287516 2865112..2865495 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0874 SWALL:AAO75981 (EMBL:AE016929) (114 aa) fasta scores: E(): 1.6e-34, 73.68% id in 114 aa; hypothetical protein 2865495 3287516 BF9343_2383 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212088.1 2865112 D 272559 CDS YP_212089.1 60681945 3287530 complement(2865575..2866459) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron beta-ureidopropionase BT0875 SWALL:AAO75982 (EMBL:AE016929) (294 aa) fasta scores: E(): 2.3e-116, 91.15% id in 294 aa, and to Xanthomonas axonopodis beta-alanine synthetase XAC2303 SWALL:Q8PK73 (EMBL:AE011867) (294 aa) fasta scores: E(): 3.7e-81, 65.97% id in 291 aa; putative hydrolase 2866459 3287530 BF9343_2384 Bacteroides fragilis NCTC 9343 putative hydrolase YP_212089.1 2865575 R 272559 CDS YP_212090.1 60681946 3287539 complement(2866471..2867586) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0876 SWALL:AAO75983 (EMBL:AE016929) (371 aa) fasta scores: E(): 9.9e-127, 80.05% id in 371 aa, and to Xylella fastidiosa conserved hypothetical protein PD1460 SWALL:AAO29304 (EMBL:AE012558) (363 aa) fasta scores: E(): 1.4e-59, 47.68% id in 346 aa; putative deiminase 2867586 3287539 BF9343_2385 Bacteroides fragilis NCTC 9343 putative deiminase YP_212090.1 2866471 R 272559 CDS YP_212091.1 60681947 3287519 complement(2867667..2868194) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ferredoxin domain containing protein BT0877 SWALL:Q8A9D8 (EMBL:AE016929) (180 aa) fasta scores: E(): 4e-57, 84.57% id in 175 aa, and to Archaeoglobus fulgidus hypothetical protein AF2201 SWALL:YM01_ARCFU (SWALL:O28082) (184 aa) fasta scores: E(): 5.8e-13, 42.16% id in 185 aa; hypothetical protein 2868194 3287519 BF9343_2386 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212091.1 2867667 R 272559 CDS YP_212092.1 60681948 3287536 2868289..2868909 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter, ATP-binding protein BT0878 SWALL:AAO75985 (EMBL:AE016929) (206 aa) fasta scores: E(): 1.2e-55, 71.84% id in 206 aa, and to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or B0652 or Z0802 or ECS0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 3.2e-12, 28.5% id in 200 aa; putative ABC transport system, ATP-binding protein 2868909 3287536 BF9343_2387 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_212092.1 2868289 D 272559 CDS YP_212093.1 60681949 3287517 2868913..2869707 1 NC_003228.3 Similar to Methanosarcina mazei ABC transporter, ATP-binding protein MM2080 SWALL:Q8PV91 (EMBL:AE013448) (267 aa) fasta scores: E(): 5.6e-35, 39.24% id in 265 aa, and to Escherichia coli hypothetical UPF0014 membrane protein YbbM or B0491 SWALL:YBBM_ECOLI (SWALL:P77307) (259 aa) fasta scores: E(): 1.8e-16, 30.3% id in 264 aa; putative ABC transport system, membrane protein 2869707 3287517 BF9343_2388 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212093.1 2868913 D 272559 CDS YP_212094.1 60681950 3287518 2869715..2869987 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0880 SWALL:AAO75987 (EMBL:AE016929) (92 aa) fasta scores: E(): 2.7e-18, 55.05% id in 89 aa; hypothetical protein 2869987 3287518 BF9343_2389 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212094.1 2869715 D 272559 CDS YP_212095.1 60681951 3287503 2870078..2870461 1 NC_003228.3 Similar to Listeria monocytogenes hypothetical protein LMO0406 SWALL:Q8Y9W3 (EMBL:AL591975) (126 aa) fasta scores: E(): 1.5e-26, 57.93% id in 126 aa, and to Bacillus subtilis hypothetical protein YyaH SWALL:YYAH_BACSU (SWALL:P37516) (126 aa) fasta scores: E(): 1.5e-24, 54.33% id in 127 aa; hypothetical protein 2870461 3287503 BF9343_2390 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212095.1 2870078 D 272559 CDS YP_212096.1 60681952 3287520 complement(2870454..2870867) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0881 SWALL:Q8A9D4 (EMBL:AE016929) (138 aa) fasta scores: E(): 1e-11, 36.64% id in 131 aa; hypothetical protein 2870867 3287520 BF9343_2391 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212096.1 2870454 R 272559 CDS YP_212097.1 60681953 3287522 2870974..2872068 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0882 SWALL:AAO75989 (EMBL:AE016929) (364 aa) fasta scores: E(): 5.2e-127, 85.71% id in 364 aa, and to Bacillus halodurans hypothetical protein BH1380 SWALL:YD80_BACHD (SWALL:Q9KD39) (372 aa) fasta scores: E(): 9.7e-49, 41.33% id in 375 aa; hypothetical protein 2872068 3287522 BF9343_2392 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212097.1 2870974 D 272559 CDS YP_212098.1 60681954 3287506 2872074..2872898 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0883 SWALL:AAO75990 (EMBL:AE016929) (276 aa) fasta scores: E(): 4e-65, 89.37% id in 273 aa, and to Chlamydia trachomatis hypothetical protein CT398 SWALL:O84403 (EMBL:AE001313) (254 aa) fasta scores: E(): 1.5e-06, 23.16% id in 259 aa; hypothetical protein 2872898 3287506 BF9343_2393 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212098.1 2872074 D 272559 CDS YP_212099.1 60681955 3287505 2873136..2874542 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane efflux protein oprm precursor BT0884 SWALL:AAO75991 (EMBL:AE016929) (465 aa) fasta scores: E(): 1.7e-138, 78.18% id in 463 aa, and to Pseudomonas aeruginosa outer membrane protein OprM precursor or OprK or PA0427 SWALL:OPRM_PSEAE (SWALL:Q51487) (485 aa) fasta scores: E(): 5.7e-37, 29.35% id in 436 aa; putative outer membrane exported protein 2874542 3287505 BF9343_2394 Bacteroides fragilis NCTC 9343 putative outer membrane exported protein YP_212099.1 2873136 D 272559 CDS YP_212100.1 60681956 3287513 2874561..2875700 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative cation efflux pump BT0885 SWALL:AAO75992 (EMBL:AE016929) (365 aa) fasta scores: E(): 1.4e-102, 73.42% id in 365 aa, and to Escherichia coli hypothetical lipoprotein YhiU precursor or B3513 SWALL:YHIU_ECOLI (SWALL:P37636) (385 aa) fasta scores: E(): 3.1e-25, 26.57% id in 380 aa; putative transport-related protein 2875700 3287513 BF9343_2395 Bacteroides fragilis NCTC 9343 putative transport-related protein YP_212100.1 2874561 D 272559 CDS YP_212101.1 60681957 3287504 2875705..2878827 1 NC_003228.3 Similar to Escherichia coli acriflavine resistance protein B AcrB or AcrE or B0462 SWALL:ACRB_ECOLI (SWALL:P31224) (1049 aa) fasta scores: E(): 6.9e-145, 39.86% id in 1036 aa, and to Bacteroides thetaiotaomicron putative cation efflux pump BT0886 SWALL:AAO75993 (EMBL:AE016929) (1048 aa) fasta scores: E(): 0, 85.46% id in 1039 aa; putative drug resistance transport-related membrane protein 2878827 3287504 BF9343_2396 Bacteroides fragilis NCTC 9343 putative drug resistance transport-related membrane protein YP_212101.1 2875705 D 272559 CDS YP_212102.1 60681958 3287508 complement(2879172..2879621) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0887 SWALL:AAO75994 (EMBL:AE016929) (149 aa) fasta scores: E(): 4.2e-55, 87.91% id in 149 aa; hypothetical protein 2879621 3287508 BF9343_2397 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212102.1 2879172 R 272559 CDS YP_212103.1 60681959 3287511 2879686..2880462 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron AMP nucleosidase BT0888 SWALL:AAO75995 (EMBL:AE016929) (258 aa) fasta scores: E(): 5.1e-97, 92.24% id in 258 aa, and to the C-terminal region of Escherichia coli, and Escherichia coli O157:H7 AMP nucleosidase Amn or B1982 or Z3139 or ECS2779 SWALL:AMN_ECOLI (SWALL:P15272) (484 aa) fasta scores: E(): 1.7e-08, 33.16% id in 202 aa; putative AMP nucleosidase 2880462 3287511 BF9343_2398 Bacteroides fragilis NCTC 9343 putative AMP nucleosidase YP_212103.1 2879686 D 272559 CDS YP_212104.1 60681960 3287490 2880481..2881500 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0889 SWALL:AAO75996 (EMBL:AE016929) (339 aa) fasta scores: E(): 2.2e-115, 92.33% id in 339 aa, and to Bacillus subtilis hypothetical protein YqeN SWALL:YQEN_BACSU (SWALL:P54459) (347 aa) fasta scores: E(): 2.2e-05, 24.85% id in 338 aa; hypothetical protein 2881500 3287490 BF9343_2399 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212104.1 2880481 D 272559 CDS YP_212105.1 60681961 3287491 2882704..2883159 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0890 SWALL:Q8A9C5 (EMBL:AE016929) (156 aa) fasta scores: E(): 7.8e-37, 67.3% id in 156 aa, and N-terminal half similar to Bacteriophage P2 C protein SWALL:Q94MG2 (EMBL:AJ306907) (99 aa) fasta scores: E(): 0.31, 27.83% id in 97 aa, and to Bacteriophage P2 repressor protein C SWALL:RPC_BPP2 (SWALL:P04132) (99 aa) fasta scores: E(): 0.41, 28.42% id in 95 aa; putative DNA-binding protein 2883159 3287491 BF9343_2400 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_212105.1 2882704 D 272559 CDS YP_212106.1 60681962 3289286 2883232..2884008 1 NC_003228.3 Similar to Bacillus subtilis dihydroorotate dehydrogenase electron transfer subunit PyrK or PyrZ or PyrDB or PyrDII SWALL:PYRK_BACSU (SWALL:P25983) (256 aa) fasta scores: E(): 8.9e-28, 37.2% id in 258 aa, and to Bacteroides thetaiotaomicron dihydroorotate dehydrogenase electron transfer subunit BT0891 SWALL:AAO75998 (EMBL:AE016929) (258 aa) fasta scores: E(): 7.7e-89, 88.37% id in 258 aa; putative dihydroorotate dehydrogenase electron transfer subunit 2884008 pyrK 3289286 pyrK Bacteroides fragilis NCTC 9343 putative dihydroorotate dehydrogenase electron transfer subunit YP_212106.1 2883232 D 272559 CDS YP_212107.1 60681963 3289320 2883996..2884907 1 NC_003228.3 Similar to Bacillus subtilis dihydroorotate dehydrogenase, catalytic subunit PyrD or PyrDA or PyrDI SWALL:PYRD_BACSU (SWALL:P25996) (311 aa) fasta scores: E(): 1.3e-49, 47.97% id in 296 aa, and to Bacteroides thetaiotaomicron dihydroorotate dehydrogenase BT0892 SWALL:AAO75999 (EMBL:AE016929) (303 aa) fasta scores: E(): 2.1e-98, 93.06% id in 303 aa; putative dihydroorotate dehydrogenase, catalytic subunit 2884907 pyrD1 3289320 pyrD1 Bacteroides fragilis NCTC 9343 putative dihydroorotate dehydrogenase, catalytic subunit YP_212107.1 2883996 D 272559 CDS YP_212108.1 60681964 3285202 complement(2885125..2885802) 1 NC_003228.3 Similar to Bacillus subtilis tRNA (guanine-N(1)-)-methyltransferase TrmD SWALL:TRMD_BACSU (SWALL:O31741) (243 aa) fasta scores: E(): 3.4e-43, 50% id in 226 aa, and to Bacteroides thetaiotaomicron tRNA (guanine-N(1)-)-methyltransferase BT0893 SWALL:AAO76000 (EMBL:AE016929) (225 aa) fasta scores: E(): 2.5e-85, 95.55% id in 225 aa; putative tRNA (guanine-N(1)-)-methyltransferase 2885802 trmD 3285202 trmD Bacteroides fragilis NCTC 9343 putative tRNA (guanine-N(1)-)-methyltransferase YP_212108.1 2885125 R 272559 CDS YP_212109.1 60681965 3289219 2885879..2887876 1 NC_003228.3 Similar to Escherichia coli DNA ligase LigA or Lig or DnaL or PdeC or Lop or B2411 SWALL:DNLJ_ECOLI (SWALL:P15042) (671 aa) fasta scores: E(): 4.3e-104, 42.75% id in 669 aa, and to Bacteroides thetaiotaomicron DNA ligase BT0894 SWALL:AAO76001 (EMBL:AE016929) (666 aa) fasta scores: E(): 0, 90.24% id in 666 aa; putative DNA ligase 2887876 ligA 3289219 ligA Bacteroides fragilis NCTC 9343 putative DNA ligase YP_212109.1 2885879 D 272559 CDS YP_212110.1 60681966 3285189 2887980..2888873 1 NC_003228.3 Similar to Bacillus subtilis dihydrodipicolinate synthase DapA SWALL:DAPA_BACSU (SWALL:Q04796) (290 aa) fasta scores: E(): 4.2e-44, 45.26% id in 285 aa, and to Bacteroides thetaiotaomicron dihydrodipicolinate synthase BT0895 SWALL:AAO76002 (EMBL:AE016929) (297 aa) fasta scores: E(): 2.5e-104, 95.28% id in 297 aa; putative dihydrodipicolinate synthase 2888873 dapA2 3285189 dapA2 Bacteroides fragilis NCTC 9343 putative dihydrodipicolinate synthase YP_212110.1 2887980 D 272559 CDS YP_212111.1 60681967 3287501 complement(2889025..2889651) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron chloramphenicol acetyltransferase BT0702 SWALL:AAO75809 (EMBL:AE016928) (207 aa) fasta scores: E(): 1e-36, 48.03% id in 204 aa, and to Escherichia coli chloramphenicol acetyltransferase III Cat3 SWALL:CAT3_ECOLI (SWALL:P00484) (213 aa) fasta scores: E(): 1.9e-13, 28% id in 200 aa; putative chloramphenicol acetyltransferase 2889651 3287501 BF9343_2406 Bacteroides fragilis NCTC 9343 putative chloramphenicol acetyltransferase YP_212111.1 2889025 R 272559 CDS YP_212112.1 60681968 3287489 complement(2889746..2890120) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2237 SWALL:AAO77344 (EMBL:AE016935) (118 aa) fasta scores: E(): 4.5e-15, 39.51% id in 124 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YbdF or B0579 or Z0718 or ECS0617 SWALL:YBDF_ECOLI (SWALL:P39454) (122 aa) fasta scores: E(): 1.5e-07, 33.01% id in 103 aa; hypothetical protein 2890120 3287489 BF9343_2407 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212112.1 2889746 R 272559 CDS YP_212113.1 60681969 3287495 2890420..2891313 1 NC_003228.3 Similar to Vibrio vulnificus uncharacterized conserved protein VV20162 SWALL:Q8D7J0 (EMBL:AE016808) (261 aa) fasta scores: E(): 2.7e-28, 40.94% id in 232 aa, and to Anabaena sp. hypothetical protein ALL5016 SWALL:Q8YMB8 (EMBL:AP003598) (273 aa) fasta scores: E(): 1.4e-27, 38.73% id in 253 aa; hypothetical protein 2891313 3287495 BF9343_2408 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212113.1 2890420 D 272559 CDS YP_212114.1 60681970 3287500 complement(2891750..2894050) 1 NC_003228.3 Almost identical to Bacteroides fragilis hypothetical 56.6 kDa protein SWALL:Q93CN4 (EMBL:AF404759) (491 aa) fasta scores: E(): 1.2e-190, 99.58% id in 487 aa, and similar to Pseudomonas aeruginosa hypothetical protein PA3339 SWALL:Q9HYQ6 (EMBL:AE004756) (728 aa) fasta scores: E(): 1.5e-32, 28.15% id in 618 aa; hypothetical protein 2894050 3287500 BF9343_2409 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212114.1 2891750 R 272559 CDS YP_212115.1 60681971 3289262 complement(2894220..2896265) 1 NC_003228.3 Almost identical to previously sequenced Bacteroides fragilis chaperone protein HtpG SWALL:HTPG_BACFR (SWALL:P58476) (681 aa) fasta scores: E(): 0, 99.7% id in 681 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 chaperone protein HtpG or B0473 or C0593 or Z0590 or ECS0526 SWALL:HTPG_ECOLI (SWALL:P10413) (624 aa) fasta scores: E(): 1.1e-44, 32.82% id in 585 aa; chaperone protein 2896265 htpG 3289262 htpG Bacteroides fragilis NCTC 9343 chaperone protein YP_212115.1 2894220 R 272559 CDS YP_212116.1 60681972 3289162 complement(2896396..2898930) 1 NC_003228.3 Similar to Bacillus subtilis negative regulator of genetic competence ClpC/MecB ClpC or MecB SWALL:CLPC_BACSU (SWALL:P37571) (810 aa) fasta scores: E(): 5.8e-119, 48.21% id in 842 aa, and to Bacteroides thetaiotaomicron ATP-dependent Clp protease BT0898 SWALL:AAO76005 (EMBL:AE016929) (841 aa) fasta scores: E(): 0, 90.33% id in 838 aaand identical in its C-terminal region to Bacteroides fragilis ClpB protease SWALL:Q93CN5 (EMBL:AF404759) (442 aa) fasta scores: E(): 3.1e-139, 100% id in 442 aa; negative regulator of genetic competence 2898930 clpB 3289162 clpB Bacteroides fragilis NCTC 9343 negative regulator of genetic competence YP_212116.1 2896396 R 272559 CDS YP_212117.1 60681973 3289212 2899322..2901859 1 NC_003228.3 Identical to previsouly sequenced Bacteroides fragilis DNA Gyrase A subunit GyrA SWALL:Q9S1B1 (EMBL:AB017712) (845 aa) fasta scores: E(): 0, 99.76% id in 845 aa, and to Staphylococcus aureus DNA Gyrase subunit A GyrA SWALL:GYRA_STAAU (SWALL:P20831) (889 aa) fasta scores: E(): 1.5e-167, 53.51% id in 839 aa; DNA gyrase A subunit 2901859 gyrA 3289212 gyrA Bacteroides fragilis NCTC 9343 DNA gyrase A subunit YP_212117.1 2899322 D 272559 CDS YP_212118.1 60681974 3287481 2901913..2903103 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative tetratricopeptide repeat family protein BT0900 SWALL:Q8A9B5 (EMBL:AE016929) (398 aa) fasta scores: E(): 4.1e-110, 72.79% id in 397 aa; hypothetical protein 2903103 3287481 BF9343_2413 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212118.1 2901913 D 272559 CDS YP_212119.1 60681975 3287502 complement(2903453..2904574) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative universal stress protein UspA BT0901 SWALL:AAO76008 (EMBL:AE016929) (373 aa) fasta scores: E(): 1.6e-117, 83.91% id in 373 aa, and on its N-terminal region to Methanococcus jannaschii protein MJ0577 SWALL:Y577_METJA (SWALL:Q57997) (162 aa) fasta scores: E(): 5.1e-06, 36.07% id in 158 aa; hypothetical protein 2904574 3287502 BF9343_2414 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212119.1 2903453 R 272559 CDS YP_212120.1 60681976 3287480 complement(2904653..2904937) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0902 SWALL:AAO76009 (EMBL:AE016929) (96 aa) fasta scores: E(): 7.9e-30, 88.54% id in 96 aa; putative DNA-binding protein 2904937 3287480 BF9343_2415 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_212120.1 2904653 R 272559 CDS YP_212121.1 60681977 3289144 complement(2905148..2905984) 1 NC_003228.3 Almost identical to the previously sequenced Bacteroides fragilis BatE SWALL:Q9X4N7 (EMBL:AF116251) (278 aa) fasta scores: E(): 2.2e-101, 98.92% id in 278 aa, and similar to Bacteroides thetaiotaomicron BatE, TRP domain containing protein BT0903 SWALL:AAO76010 (EMBL:AE016929) (277 aa) fasta scores: E(): 2.4e-77, 71.94% id in 278 aa; aerotolerance-related exported protein 2905984 batE 3289144 batE Bacteroides fragilis NCTC 9343 aerotolerance-related exported protein YP_212121.1 2905148 R 272559 CDS YP_212122.1 60681978 3289132 complement(2906003..2907847) 1 NC_003228.3 Almost identical to the previously sequenced Bacteroides fragilis BatD SWALL:Q9X4N6 (EMBL:AF116251) (615 aa) fasta scores: E(): 0, 99.35% id in 615 aa, and similar to Bacteroides thetaiotaomicron BatD, conserved hypothetical protein BT0904 SWALL:AAO76011 (EMBL:AE016929) (608 aa) fasta scores: E(): 1.2e-178, 78.52% id in 610 aa; aerotolerance-related exported protein 2907847 batD 3289132 batD Bacteroides fragilis NCTC 9343 aerotolerance-related exported protein YP_212122.1 2906003 R 272559 CDS YP_212123.1 60681979 3289136 complement(2907862..2908578) 1 NC_003228.3 Identical to the previously sequenced Bacteroides fragilis BatC SWALL:Q9X4N5 (EMBL:AF116251) (238 aa) fasta scores: E(): 4.9e-66, 100% id in 238 aa, and similar to Bacteroides thetaiotaomicron BatC, conserved hypothetical protein BT0905 SWALL:AAO76012 (EMBL:AE016929) (242 aa) fasta scores: E(): 2e-50, 79.01% id in 243 aa; aerotolerance-related exported protein 2908578 batC 3289136 batC Bacteroides fragilis NCTC 9343 aerotolerance-related exported protein YP_212123.1 2907862 R 272559 CDS YP_212124.1 60681980 3288979 complement(2908581..2909606) 1 NC_003228.3 Almost identical to previously sequenced Bacteroides fragilis BatB SWALL:Q9X4N4 (EMBL:AF116251) (341 aa) fasta scores: E(): 1.6e-118, 99.7% id in 341 aa, and similar to Bacteroides thetaiotaomicron BatB, conserved hypothetical protein BT0906 SWALL:AAO76013 (EMBL:AE016929) (342 aa) fasta scores: E(): 3.8e-108, 88.27% id in 341 aa, and to Chlorobium tepidum hypothetical protein CT2279 SWALL:Q8KA89 (EMBL:AE012972) (335 aa) fasta scores: E(): 3.3e-19, 28.86% id in 336 aa; aerotolerance-related membrane protein 2909606 batB 3288979 batB Bacteroides fragilis NCTC 9343 aerotolerance-related membrane protein YP_212124.1 2908581 R 272559 CDS YP_212125.1 60681981 3289117 complement(2909620..2910603) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis BatA SWALL:Q9X4N3 (EMBL:AF116251) (327 aa) fasta scores: E(): 3.1e-119, 100% id in 327 aa, and similar to Bacteroides thetaiotaomicron BatA BT0907 SWALL:AAO76014 (EMBL:AE016929) (327 aa) fasta scores: E(): 2.6e-109, 90.52% id in 327 aa, and to Chlorobium tepidum hypothetical protein CT2278 SWALL:Q8KA90 (EMBL:AE012972) (332 aa) fasta scores: E(): 4.5e-27, 35.18% id in 324 aa; aerotolerance-related membrane protein 2910603 batA 3289117 batA Bacteroides fragilis NCTC 9343 aerotolerance-related membrane protein YP_212125.1 2909620 R 272559 CDS YP_212126.1 60681982 3287484 complement(2910655..2911728) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0908 SWALL:AAO76015 (EMBL:AE016929) (362 aa) fasta scores: E(): 4.5e-117, 89.35% id in 357 aa; putative conserved membrane exported protein 2911728 3287484 BF9343_2421 Bacteroides fragilis NCTC 9343 putative conserved membrane exported protein YP_212126.1 2910655 R 272559 CDS YP_212127.1 60681983 3287487 complement(2911737..2912606) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0909 SWALL:AAO76016 (EMBL:AE016929) (289 aa) fasta scores: E(): 6.7e-106, 93.42% id in 289 aa, and to Mycobacterium tuberculosis hypothetical protein Rv1480 or MT1527 or MTV007.27 or MTCY277.01 SWALL:YE80_MYCTU (SWALL:P71761) (317 aa) fasta scores: E(): 5.4e-21, 27.93% id in 290 aa; hypothetical protein 2912606 3287487 BF9343_2422 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212127.1 2911737 R 272559 CDS YP_212128.1 60681984 3287473 complement(2912663..2913658) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron magnesium chelatase, subunit I BT0910 SWALL:AAO76017 (EMBL:AE016929) (331 aa) fasta scores: E(): 9.8e-111, 96.67% id in 331 aa, and to Chlorobium tepidum magnesium chelatase, subunit I, putative CT0063 SWALL:Q8KGA5 (EMBL:AE012786) (332 aa) fasta scores: E(): 8.8e-61, 51.8% id in 332 aa; putative magnesium chelatase 2913658 3287473 BF9343_2423 Bacteroides fragilis NCTC 9343 putative magnesium chelatase YP_212128.1 2912663 R 272559 CDS YP_212129.1 60681985 3287483 complement(2913902..2915353) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative integration host factor IHF alpha subunit BT0911 SWALL:AAO76018 (EMBL:AE016929) (487 aa) fasta scores: E(): 2e-43, 45.34% id in 516 aa, and in its N-terminal region to Pseudomonas aeruginosa integration host factor beta-subunit IhfB or HimD or PA3161 SWALL:IHFB_PSEAE (SWALL:Q51473) (94 aa) fasta scores: E(): 0.09, 29.03% id in 93 aa; hypothetical protein 2915353 3287483 BF9343_2424 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212129.1 2913902 R 272559 CDS YP_212130.1 60681986 3289264 complement(2915346..2915636) 1 NC_003228.3 Similar to Bacillus stearothermophilus, Bacillus caldolyticus, and Bacillus caldotenax DNA-binding protein HU Hup or Hbs or HbsU SWALL:DBH_BACST (SWALL:P02346) (90 aa) fasta scores: E(): 9.5e-06, 32.22% id in 90 aa, and to Bacteroides thetaiotaomicron DNA-binding protein HU BT0912 SWALL:AAO76019 (EMBL:AE016929) (90 aa) fasta scores: E(): 1.2e-23, 76.66% id in 90 aa; putative histone-like DNA-binding protein HU2 2915636 hup2 3289264 hup2 Bacteroides fragilis NCTC 9343 putative histone-like DNA-binding protein HU2 YP_212130.1 2915346 R 272559 CDS YP_212131.1 60681987 3287488 complement(2915711..2917009) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative Fe-S oxidoreductase BT0913 SWALL:AAO76020 (EMBL:AE016929) (436 aa) fasta scores: E(): 2.1e-144, 87.03% id in 432 aa, and to Clostridium tetani Fe-S oxidoreductase CTC01287 SWALL:AAO35853 (EMBL:AE015940) (444 aa) fasta scores: E(): 1.4e-49, 40.76% id in 444 aa; putative oxidoreductase 2917009 3287488 BF9343_2426 Bacteroides fragilis NCTC 9343 putative oxidoreductase YP_212131.1 2915711 R 272559 CDS YP_212132.1 60681988 3289022 complement(2917006..2917965) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron recognition particle-docking protein FtsY BT0914 SWALL:AAO76021 (EMBL:AE016929) (319 aa) fasta scores: E(): 7.4e-96, 96.23% id in 319 aa, and to Escherichia coli cell division protein FtsY or B3464 SWALL:FTSY_ECOLI (SWALL:P10121) (497 aa) fasta scores: E(): 5.5e-44, 52.31% id in 302 aa; putative recognition particle-docking protein 2917965 ftsY 3289022 ftsY Bacteroides fragilis NCTC 9343 putative recognition particle-docking protein YP_212132.1 2917006 R 272559 CDS YP_212133.1 60681989 3288454 complement(2918293..2918481) 1 NC_003228.3 Similar to Chlorobium tepidum 50S ribosomal protein L33 RpmG or CT1373 SWALL:RL33_CHLTE (SWALL:Q8KCP0) (60 aa) fasta scores: E(): 3.8e-12, 69.49% id in 59 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L33 BT0915 SWALL:AAO76022 (EMBL:AE016929) (62 aa) fasta scores: E(): 1.2e-23, 98.38% id in 62 aa; 50S ribosomal protein L33 2918481 rpmG 3288454 rpmG Bacteroides fragilis NCTC 9343 50S ribosomal protein L33 YP_212133.1 2918293 R 272559 CDS YP_212134.1 60681990 3288848 complement(2918508..2918768) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L28 RpmB or B3637 or C4461 or Z5061 or ECS4512 or SF3676 SWALL:RL28_ECOLI (SWALL:P02428) (77 aa) fasta scores: E(): 5.9e-09, 40.54% id in 74 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L28 BT0916 SWALL:AAO76023 (EMBL:AE016929) (86 aa) fasta scores: E(): 3.8e-35, 95.34% id in 86 aa; 50S ribosomal protein L28 2918768 rpmB 3288848 rpmB Bacteroides fragilis NCTC 9343 50S ribosomal protein L28 YP_212134.1 2918508 R 272559 CDS YP_212135.1 60681991 3287472 complement(2918890..2920122) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron competence-damage inducible protein BT0917 SWALL:AAO76024 (EMBL:AE016929) (386 aa) fasta scores: E(): 3.3e-113, 79.27% id in 386 aa, and to Synechocystis sp. CinA-like protein CinA or SLR0427 SWALL:CINA_SYNY3 (SWALL:Q55760) (416 aa) fasta scores: E(): 1.9e-40, 35.57% id in 416 aa; putative competence-damage inducible 2920122 3287472 BF9343_2430 Bacteroides fragilis NCTC 9343 putative competence-damage inducible YP_212135.1 2918890 R 272559 CDS YP_212136.1 60681992 3287475 complement(2920130..2921149) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative O-sialoglycoprotein endopeptidase BT0920 SWALL:AAO76027 (EMBL:AE016929) (339 aa) fasta scores: E(): 3.8e-124, 94.69% id in 339 aa, and to Pasteurella haemolytica O-sialoglycoprotein endopeptidase Gcp SWALL:GCP_PASHA (SWALL:P36175) (325 aa) fasta scores: E(): 1.5e-47, 41.92% id in 322 aa; putative glycoprotease 2921149 3287475 BF9343_2431 Bacteroides fragilis NCTC 9343 putative glycoprotease YP_212136.1 2920130 R 272559 CDS YP_212137.1 60681993 3287476 2921182..2925786 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0921 SWALL:AAO76028 (EMBL:AE016929) (1484 aa) fasta scores: E(): 0, 70.24% id in 1482 aa; hypothetical protein 2925786 3287476 BF9343_2432 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212137.1 2921182 D 272559 CDS YP_212138.1 60681994 3287474 complement(2925882..2926262) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4608 SWALL:AAO79713 (EMBL:AE016945) (124 aa) fasta scores: E(): 1.2e-36, 77.04% id in 122 aa, and to Mycobacterium tuberculosis hypothetical protein Rv0870c or MTV043.63c or MT0892.1 SWALL:O53882 (EMBL:AL022004) (129 aa) fasta scores: E(): 3.8e-18, 45.08% id in 122 aa; putative conserved hypothetical membrane protein 2926262 3287474 BF9343_2433 Bacteroides fragilis NCTC 9343 putative conserved hypothetical membrane protein YP_212138.1 2925882 R 272559 CDS YP_212139.1 60681995 3287785 complement(2926352..2927845) 1 NC_003228.3 Similar to Clostridium sticklandii prolyl-tRNA synthetase ProS SWALL:SYP_CLOST (SWALL:Q9L4Q8) (481 aa) fasta scores: E(): 1.4e-73, 52.98% id in 502 aa, and to Bacteroides thetaiotaomicron prolyl-tRNAa synthetase BT0929 SWALL:AAO76036 (EMBL:AE016929) (497 aa) fasta scores: E(): 2.4e-195, 96.57% id in 497 aa; prolyl-tRNA synthetase 2927845 proS 3287785 proS Bacteroides fragilis NCTC 9343 prolyl-tRNA synthetase YP_212139.1 2926352 R 272559 CDS YP_212140.1 60681996 3287479 complement(2928140..2928874) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1899 SWALL:AAO77006 (EMBL:AE016933) (235 aa) fasta scores: E(): 3.7e-35, 49.17% id in 242 aa, and to Campylobacter jejuni hypothetical protein CJ1467 SWALL:Q9PMJ3 (EMBL:AL139078) (254 aa) fasta scores: E(): 1.9e-13, 31.1% id in 254 aa; hypothetical protein 2928874 3287479 BF9343_2435 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212140.1 2928140 R 272559 CDS YP_212141.1 60681997 3287464 complement(2929006..2932239) 1 NC_003228.3 Similar to Streptomyces coelicolor tricorn protease homolog 1 Tri1 or SCO2549 or SCC77.16c SWALL:TRI1_STRCO (SWALL:Q9RDE2) (1067 aa) fasta scores: E(): 1e-51, 29.6% id in 1091 aa, and to Thermoplasma acidophilum tricorn protease Tri or TA1490 SWALL:TRI_THEAC (SWALL:P96086) (1071 aa) fasta scores: E(): 8.2e-42, 27.78% id in 1069 aa; putative exported tricorn protease 2932239 3287464 BF9343_2436 Bacteroides fragilis NCTC 9343 putative exported tricorn protease YP_212141.1 2929006 R 272559 CDS YP_212142.1 60681998 3287121 2932611..2933129 1 NC_003228.3 Similar to Pseudomonas denitrificans bifunctional cobalamin biosynthesis protein CobP [includes: cobinamide kinase; cobinamide phosphate guanylyltransferase] SWALL:COBP_PSEDE (SWALL:P29931) (173 aa) fasta scores: E(): 6e-20, 39.64% id in 169 aa, and to Brucella suis cobinamide kinase/cobinamide phosphate guanylyltransferase CobU or BR1308 SWALL:Q8G008 (EMBL:AE014428) (173 aa) fasta scores: E(): 6.4e-22, 40.23% id in 169 aa; bifunctional cobalamin biosynthesis protein 2933129 cobP 3287121 cobP Bacteroides fragilis NCTC 9343 bifunctional cobalamin biosynthesis protein YP_212142.1 2932611 D 272559 CDS YP_212143.1 60681999 3287468 2933152..2934189 1 NC_003228.3 Similar to Ralstonia solanacearum probable nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase transmembrane protein CobU or RSC2397 or RS02725 SWALL:Q8XWS3 (EMBL:AL646069) (354 aa) fasta scores: E(): 1.1e-54, 45.45% id in 341 aa, and to Escherichia coli nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT or B1991 SWALL:COBT_ECOLI (SWALL:P36562) (359 aa) fasta scores: E(): 1.3e-31, 33.03% id in 336 aa; putative phosphoribosyltransferase 2934189 3287468 BF9343_2438 Bacteroides fragilis NCTC 9343 putative phosphoribosyltransferase YP_212143.1 2933152 D 272559 CDS YP_212144.1 60682000 3287478 2934202..2934945 1 NC_003228.3 Similar to Shewanella oneidensis cobalamin 5'-phosphate synthase CobS or SO1036 SWALL:Q8EI17 (EMBL:AE015548) (262 aa) fasta scores: E(): 8.9e-25, 36.03% id in 247 aa, and to Escherichia coli cobalamin [5'-phosphate] synthase CobS or B1992 SWALL:COBS_ECOLI (SWALL:P36561) (247 aa) fasta scores: E(): 3.3e-16, 33.46% id in 245 aa; putative cobalamin 5'-phosphate synthase 2934945 3287478 BF9343_2439 Bacteroides fragilis NCTC 9343 putative cobalamin 5'-phosphate synthase YP_212144.1 2934202 D 272559 CDS YP_212145.1 60682001 3287466 2934948..2935493 1 NC_003228.3 Similar to Escherichia coli alpha-ribazole-5'-phosphate phosphatase CobC or PhpB or B0638 SWALL:COBC_ECOLI (SWALL:P52086) (203 aa) fasta scores: E(): 1.5e-05, 32.69% id in 156 aa, and to Leptospira interrogans phosphoglycerate mutase GpmA or LA4206 SWALL:Q8EYK7 (EMBL:AE011573) (194 aa) fasta scores: E(): 5.1e-16, 33.33% id in 177 aa; putative alpha-ribazole-5'-phosphate phosphatase 2935493 3287466 BF9343_2440 Bacteroides fragilis NCTC 9343 putative alpha-ribazole-5'-phosphate phosphatase YP_212145.1 2934948 D 272559 CDS YP_212146.1 60682002 3287467 complement(2935471..2936403) 1 NC_003228.3 Similar to Bacillus halodurans cobalamin biosynthesis protein CobD or BH1588 SWALL:COBD_BACHD (SWALL:Q9KCI3) (319 aa) fasta scores: E(): 2.9e-39, 36.65% id in 311 aa, and to Salmonella typhimurium CbiB protein or STM2034 SWALL:CBIB_SALTY (SWALL:Q05600) (319 aa) fasta scores: E(): 2.5e-36, 37.95% id in 303 aa; putative cobalamin biosynthesis protein 2936403 3287467 BF9343_2441 Bacteroides fragilis NCTC 9343 putative cobalamin biosynthesis protein YP_212146.1 2935471 R 272559 CDS YP_212147.1 60682003 3287454 complement(2936463..2937476) 1 NC_003228.3 Similar to Bacillus halodurans aminotransferase CobC or BH1589 SWALL:Q9KCI2 (EMBL:AP001512) (370 aa) fasta scores: E(): 3.6e-20, 35.5% id in 307 aa, and to Thermoanaerobacter tengcongensis histidinol-phosphate aminotransferase HisC or TTE2137 SWALL:HISC_THETN (SWALL:Q8R5Q4) (351 aa) fasta scores: E(): 2.1e-15, 29.47% id in 302 aa; putative histidinol-phosphate aminotransferase 2937476 3287454 BF9343_2442 Bacteroides fragilis NCTC 9343 putative histidinol-phosphate aminotransferase YP_212147.1 2936463 R 272559 CDS YP_212148.1 60682004 3289283 complement(2937469..2938956) 1 NC_003228.3 Similar to Salmonella typhimurium cobyric acid synthase CbiP or STM2019 SWALL:CBIP_SALTY (SWALL:Q05597) (506 aa) fasta scores: E(): 5.5e-71, 46.5% id in 501 aa, and to Clostridium perfringens cobyric acid synthase CbiP or CPE1045 SWALL:Q8XLJ6 (EMBL:AP003189) (487 aa) fasta scores: E(): 7.3e-72, 42.65% id in 490 aa; cobyric acid synthase 2938956 cbiP 3289283 cbiP Bacteroides fragilis NCTC 9343 cobyric acid synthase YP_212148.1 2937469 R 272559 CDS YP_212149.1 60682005 3287470 2939576..2940367 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2114 SWALL:AAO77221 (EMBL:AE016934) (258 aa) fasta scores: E(): 5.1e-23, 39.18% id in 245 aa; conserved hypothetical DNA-binding protein 2940367 3287470 BF9343_2444 Bacteroides fragilis NCTC 9343 conserved hypothetical DNA-binding protein YP_212149.1 2939576 D 272559 CDS YP_212150.1 60682006 3287471 2941104..2941451 1 NC_003228.3 hypothetical protein 2941451 3287471 BF9343_2445 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212150.1 2941104 D 272559 CDS YP_212151.1 60682007 3287456 2941448..2941771 1 NC_003228.3 hypothetical plasmid-stabilisation protein 2941771 3287456 BF9343_2446 Bacteroides fragilis NCTC 9343 hypothetical plasmid-stabilisation protein YP_212151.1 2941448 D 272559 CDS YP_212152.1 60682008 3287457 2941884..2943347 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0954 SWALL:AAO76061 (EMBL:AE016929) (470 aa) fasta scores: E(): 5.7e-132, 78.5% id in 442 aa, and to Shewanella oneidensis outer membrane efflux protein SO4090 SWALL:Q8EA19 (EMBL:AE015839) (473 aa) fasta scores: E(): 2.7e-30, 30.26% id in 456 aa; putative outer membrane protein 2943347 3287457 BF9343_2447 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_212152.1 2941884 D 272559 CDS YP_212153.1 60682009 3287462 2943378..2944376 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative membrane protein BT0955 SWALL:AAO76062 (EMBL:AE016929) (329 aa) fasta scores: E(): 1.7e-94, 83.23% id in 322 aa, and to Escherichia coli hypothetical protein YhiI precursor or B3487 SWALL:YHII_ECOLI (SWALL:P37626) (355 aa) fasta scores: E(): 1.4e-12, 25.32% id in 308 aa; hypothetical protein 2944376 3287462 BF9343_2448 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212153.1 2943378 D 272559 CDS YP_212154.1 60682010 3287455 2944478..2945692 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative transmembrane protein BT0956 SWALL:AAO76063 (EMBL:AE016929) (394 aa) fasta scores: E(): 3.1e-121, 79.89% id in 388 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YbhR or B0792 or Z1012 or ECS0870 or SF0742 SWALL:YBHR_ECOLI (SWALL:P75774) (368 aa) fasta scores: E(): 5.4e-06, 22.65% id in 384 aa; hypothetical protein 2945692 3287455 BF9343_2449 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212154.1 2944478 D 272559 CDS YP_212155.1 60682011 3287460 2945676..2946866 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0957 SWALL:AAO76064 (EMBL:AE016929) (389 aa) fasta scores: E(): 4.6e-128, 79.94% id in 394 aa, and to Helicobacter pylori conserved hypothetical integral membrane protein HP1486 SWALL:O26020 (EMBL:AE000647) (376 aa) fasta scores: E(): 1.4e-14, 28.94% id in 380 aa; hypothetical protein 2946866 3287460 BF9343_2450 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212155.1 2945676 D 272559 CDS YP_212156.1 60682012 3287461 complement(2946829..2949267) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT0998 SWALL:AAO76105 (EMBL:AE016930) (810 aa) fasta scores: E(): 2.7e-127, 40.79% id in 804 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT4057 SWALL:AAO79162 (EMBL:AE016943) (921 aa) fasta scores: E(): 2.1e-100, 40.93% id in 916 aa; putative two-component system sensor histidine kinase 2949267 3287461 BF9343_2451 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase YP_212156.1 2946829 R 272559 CDS YP_212157.1 60682013 3287445 complement(2949378..2949953) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2760 SWALL:AAO77866 (EMBL:AE016937) (187 aa) fasta scores: E(): 3.9e-20, 40.21% id in 189 aa, and to Brucella melitensis adenosylcobalamin-dependent diol dehydratase gamma subunit BMEI0092 SWALL:Q8YJJ1 (EMBL:AE009452) (223 aa) fasta scores: E(): 5e-18, 40.11% id in 177 aa; putative cobalamin adenosyltransferase 2949953 3287445 BF9343_2452 Bacteroides fragilis NCTC 9343 putative cobalamin adenosyltransferase YP_212157.1 2949378 R 272559 CDS YP_212158.1 60682014 3287055 complement(2949950..2951284) 1 NC_003228.3 Similar to Bacillus megaterium cobyrinic acid A,C-diamide synthase CobB or CbiA SWALL:COBB_BACME (SWALL:O87698) (460 aa) fasta scores: E(): 8.2e-45, 36.54% id in 446 aa, and to Chlorobium tepidum cobyrinic acid A,C-diamide synthase CbiA-1 or CT0929 SWALL:Q8KDW5 (EMBL:AE012858) (459 aa) fasta scores: E(): 1.1e-67, 43.7% id in 453 aa; cobyrinic acid A,C-diamide synthase 2951284 cobB 3287055 cobB Bacteroides fragilis NCTC 9343 cobyrinic acid A,C-diamide synthase YP_212158.1 2949950 R 272559 CDS YP_212159.1 60682015 3287446 complement(2951356..2952090) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0973 SWALL:AAO76080 (EMBL:AE016929) (242 aa) fasta scores: E(): 1.3e-82, 78.75% id in 240 aa, and to Bradyrhizobium japonicum BLL0818 protein SWALL:BAC46083 (EMBL:AP005937) (215 aa) fasta scores: E(): 1.8e-07, 26.66% id in 210 aa; hypothetical protein 2952090 3287446 BF9343_2454 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212159.1 2951356 R 272559 CDS YP_212160.1 60682016 3287450 complement(2952125..2952610) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative integral membrane protein BT0974 SWALL:AAO76081 (EMBL:AE016929) (164 aa) fasta scores: E(): 4.1e-55, 85.97% id in 164 aa, and to Campylobacter jejuni putative integral membrane protein CJ1165c SWALL:Q9PND0 (EMBL:AL139077) (164 aa) fasta scores: E(): 1.2e-14, 31.84% id in 157 aa; hypothetical protein 2952610 3287450 BF9343_2455 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212160.1 2952125 R 272559 CDS YP_212161.1 60682017 3287443 complement(2952607..2953386) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative integral membrane protein BT0975 SWALL:AAO76082 (EMBL:AE016929) (255 aa) fasta scores: E(): 4.5e-85, 88.23% id in 255 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YyjP or B4364 or SF4395 SWALL:YJJP_ECOLI (SWALL:P39402) (256 aa) fasta scores: E(): 1e-13, 31.48% id in 235 aa; hypothetical protein 2953386 3287443 BF9343_2456 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212161.1 2952607 R 272559 CDS YP_212162.1 60682018 3287447 complement(2953501..2955189) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative membrane protein BT2092 SWALL:AAO77199 (EMBL:AE016934) (554 aa) fasta scores: E(): 4.7e-110, 53.88% id in 553 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical membrane protein YidE or B3685 or Z5181 or ECS4625 or SF3778 SWALL:YIDE_ECOLI (SWALL:P29211) (553 aa) fasta scores: E(): 2.9e-77, 41.05% id in 548 aa; hypothetical protein 2955189 3287447 BF9343_2457 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212162.1 2953501 R 272559 CDS YP_212163.1 60682019 3287449 2956336..2958408 1 NC_003228.3 Similar to Porphyromonas gingivalis hypothetical tonb-linked outer membrane receptor PG13 SWALL:Q9KIB0 (EMBL:AF237558) (757 aa) fasta scores: E(): 2.2e-47, 33.43% id in 676 aa, and to Escherichia coli colicin I receptor precursor CirA or Cir or FeuA or B2155 SWALL:CIRA_ECOLI (SWALL:P17315) (663 aa) fasta scores: E(): 4.5e-12, 24.3% id in 683 aa; putative iron transport-related exported protein 2958408 3287449 BF9343_2458 Bacteroides fragilis NCTC 9343 putative iron transport-related exported protein YP_212163.1 2956336 D 272559 CDS YP_212164.1 60682020 3287432 2958496..2959329 1 NC_003228.3 Similar to Salmonella typhimurium cobalt chelatase CbiK or STM2025 SWALL:CBIK_SALTY (SWALL:Q05592) (264 aa) fasta scores: E(): 7.8e-25, 38.24% id in 251 aa, and to Fusobacterium nucleatum cobalt chelatase FN1263 SWALL:Q8R628 (EMBL:AE010632) (283 aa) fasta scores: E(): 1.2e-36, 43.91% id in 271 aa; putative cobalt chelatase 2959329 3287432 BF9343_2459 Bacteroides fragilis NCTC 9343 putative cobalt chelatase YP_212164.1 2958496 D 272559 CDS YP_212165.1 60682021 3288816 2959326..2961680 1 NC_003228.3 Similar to Leptospira interrogans probable TonB-dependent receptor LA2641 SWALL:Q8F2X2 (EMBL:AE011431) (746 aa) fasta scores: E(): 9e-16, 27.74% id in 757 aa, and to Pseudomonas putida TonB-dependent receptor, putative PP3612 SWALL:AAN69212 (EMBL:AE016787) (770 aa) fasta scores: E(): 4.5e-11, 21.84% id in 792 aa; putative transport-related exported protein 2961680 3288816 BF9343_2460 Bacteroides fragilis NCTC 9343 putative transport-related exported protein YP_212165.1 2959326 D 272559 CDS YP_212166.1 60682022 3287439 2961680..2963152 1 NC_003228.3 Similar to Pseudomonas putida conserved hypothetical protein PP3331 SWALL:AAN68937 (EMBL:AE016786) (497 aa) fasta scores: E(): 1.8e-34, 29.56% id in 504 aa, and to Pseudomonas aeruginosa hypothetical protein PA0435 SWALL:Q9I682 (EMBL:AE004480) (492 aa) fasta scores: E(): 1.2e-32, 28.34% id in 508 aa; hypothetical protein 2963152 3287439 BF9343_2461 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212166.1 2961680 D 272559 CDS YP_212167.1 60682023 3287452 2963154..2967092 1 NC_003228.3 C-terminal region similar to Bacteroides thetaiotaomicron protoporphyrin IX magnesium chelatase BT0494 SWALL:AAO75601 (EMBL:AE016928) (854 aa) fasta scores: E(): 3e-109, 50.46% id in 539 aa, and N-terminal region to Bacteroides thetaiotaomicron cobalamin biosynthesis protein BT0495 SWALL:AAO75602 (EMBL:AE016928) (598 aa) fasta scores: E(): 4.5e-81, 37.58% id in 612 aa; putative cobalamin biosynthesis-related membrane protein 2967092 3287452 BF9343_2462 Bacteroides fragilis NCTC 9343 putative cobalamin biosynthesis-related membrane protein YP_212167.1 2963154 D 272559 CDS YP_212168.1 60682024 3287434 2967097..2967657 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0493 SWALL:AAO75600 (EMBL:AE016928) (233 aa) fasta scores: E(): 6.2e-12, 31.74% id in 189 aa; hypothetical protein 2967657 3287434 BF9343_2463 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212168.1 2967097 D 272559 CDS YP_212169.1 60682025 3287438 2967677..2968294 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron integral membrane protein BT0492 SWALL:AAO75599 (EMBL:AE016928) (205 aa) fasta scores: E(): 1.1e-37, 53.88% id in 193 aa, and to Methanosarcina acetivorans MotA/TolQ/ExbB proton channel family protein MA4641 SWALL:Q8TH81 (EMBL:AE011187) (209 aa) fasta scores: E(): 6e-17, 31.63% id in 196 aa; putative transport-related membrane protein 2968294 3287438 BF9343_2464 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_212169.1 2967677 D 272559 CDS YP_212170.1 60682026 3287441 2968260..2968586 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0491 SWALL:Q8AAH4 (EMBL:AE016928) (108 aa) fasta scores: E(): 4.6e-28, 73.83% id in 107 aa, and to Methanosarcina mazei conserved protein MM1598 SWALL:Q8PWI8 (EMBL:AE013393) (135 aa) fasta scores: E(): 5.8e-15, 50.92% id in 108 aa; putative conserved membrane protein 2968586 3287441 BF9343_2465 Bacteroides fragilis NCTC 9343 putative conserved membrane protein YP_212170.1 2968260 D 272559 CDS YP_212171.1 60682027 3286883 2968687..2970096 1 NC_003228.3 Similar to Salmonella typhimurium precorrin-3B C17-methyltransferase CbiH or STM2027 SWALL:CBIH_SALTY (SWALL:Q05590) (241 aa) fasta scores: E(): 3.5e-38, 48.73% id in 238 aa, and to Chlorobium tepidum precorrin-3B C17-methyltransferase/precorrin-8x methylmutase CbiCH or CT0387 SWALL:Q8KFE0 (EMBL:AE012816) (479 aa) fasta scores: E(): 2.5e-98, 55.46% id in 467 aa; precorrin-3B C17-methyltransferase 2970096 cobJ 3286883 cobJ Bacteroides fragilis NCTC 9343 precorrin-3B C17-methyltransferase YP_212171.1 2968687 D 272559 CDS YP_212172.1 60682028 3287442 2970153..2971457 1 NC_003228.3 C-terminal region similar to Salmonella typhimurium precorrin-8W decarboxylase CbiT or STM2030 SWALL:CBIT_SALTY (SWALL:Q05632) (192 aa) fasta scores: E(): 5.9e-13, 35.35% id in 181 aa, and N-terminal region to Salmonella typhimurium, and Salmonella typhi precorrin-6Y C5,15-methyltransferase [decarboxylating] CbiE or STM2031 or SY2236 or T0843 SWALL:CBIE_SALTY (SWALL:Q05629) (201 aa) fasta scores: E(): 1.7e-06, 27.27% id in 209 aa; putative bifunctional CbiE/CbiT cobalamin biosynthesis protein 2971457 3287442 BF9343_2467 Bacteroides fragilis NCTC 9343 putative bifunctional CbiE/CbiT cobalamin biosynthesis protein YP_212172.1 2970153 D 272559 CDS YP_212173.1 60682029 3287422 2971464..2973263 1 NC_003228.3 N-terminal region similar to Salmonella typhimurium, and Salmonella typhi precorrin-4 C11-methyltransferase CbiF or STM2029 or STY2234 or T0845 SWALL:CBIF_SALTY (SWALL:Q05630) (257 aa) fasta scores: E(): 1.7e-31, 40.08% id in 247 aa, and C-terminal region to Bacillus megaterium CbiG protein SWALL:O87697 (EMBL:AJ000758) (374 aa) fasta scores: E(): 8.9e-26, 31.84% id in 358 aa; putative bifunctional CbiF/CbiG cobalamin biosynthesis protein 2973263 3287422 BF9343_2468 Bacteroides fragilis NCTC 9343 putative bifunctional CbiF/CbiG cobalamin biosynthesis protein YP_212173.1 2971464 D 272559 CDS YP_212174.1 60682030 3287440 2973266..2975194 1 NC_003228.3 Full length similar to Chlorobium tepidum precorrin-6X reductase/cobalamin biosynthesis protein CbiD CbiDJ or CT0384 SWALL:Q8KFE3 (EMBL:AE012816) (610 aa) fasta scores: E(): 3.1e-32, 37.07% id in 650 aa, and to Salmonella typhimurium CbiD protein or STM2032 SWALL:CBID_SALTY (SWALL:Q05628) (379 aa) fasta scores: E(): 3.5e-20, 37.95% id in 303 aa, and to Synechocystis sp. precorrin-6X reductase CobK or SLR0252 SWALL:COBK_SYNY3 (SWALL:P72711) (261 aa) fasta scores: E(): 0.0033, 26.39% id in 269 aa; putative bifunctional CbiD/CbiJ cobalamin biosynthesis protein 2975194 3287440 BF9343_2469 Bacteroides fragilis NCTC 9343 putative bifunctional CbiD/CbiJ cobalamin biosynthesis protein YP_212174.1 2973266 D 272559 CDS YP_212175.1 60682031 3287421 2975461..2975877 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2369 SWALL:AAO77476 (EMBL:AE016935) (209 aa) fasta scores: E(): 1.2e-11, 36.66% id in 120 aa; putative lipoprotein 2975877 3287421 BF9343_2470 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212175.1 2975461 D 272559 CDS YP_212176.1 60682032 3287430 complement(2976105..2977313) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hexokinase type III BT2430 SWALL:AAO77537 (EMBL:AE016936) (402 aa) fasta scores: E(): 1.4e-129, 82.09% id in 402 aa, and to the C-terminal domain (catalytic domain) of Homo sapiens hexokinase type III Hk3 SWALL:HXK3_HUMAN (SWALL:P52790) (923 aa) fasta scores: E(): 2.2e-18, 27.64% id in 416 aa, and to Kluyveromyces lactis hexokinase Rag5 SWALL:HXK_KLULA (SWALL:P33284) (485 aa) fasta scores: E(): 4.5e-17, 31.45% id in 302 aa. Note: Appart from the match to B. thetaiotaomicron the rest of the database matches are to eukaryotic entries; putative hexokinase 2977313 3287430 BF9343_2471 Bacteroides fragilis NCTC 9343 putative hexokinase YP_212176.1 2976105 R 272559 CDS YP_212177.1 60682033 3287420 complement(2977476..2977772) 1 NC_003228.3 hypothetical protein 2977772 3287420 BF9343_2472 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212177.1 2977476 R 272559 CDS YP_212178.1 60682034 3287424 complement(2978568..2979707) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron carboxynorspermidine decarboxylase BT0674 SWALL:Q8A9Z1 (EMBL:AE016928) (379 aa) fasta scores: E(): 6.8e-149, 91.29% id in 379 aa, and to Bacillus halodurans carboxynorspermidine decarboxylase BH3958 SWALL:Q9K5X8 (EMBL:AP001520) (379 aa) fasta scores: E(): 1.9e-67, 44.06% id in 379 aa; putative carboxynorspermidine decarboxylase 2979707 3287424 BF9343_2473 Bacteroides fragilis NCTC 9343 putative carboxynorspermidine decarboxylase YP_212178.1 2978568 R 272559 CDS YP_212179.1 60682035 3287428 complement(2979834..2982194) 1 NC_003228.3 Similar to Bacillus stearothermophilus ATP-dependent DNA helicase PcrA SWALL:PCRA_BACST (SWALL:P56255) (724 aa) fasta scores: E(): 1e-96, 39.89% id in 782 aa, and to Leuconostoc citreum ATP-dependent DNA helicase PcrA SWALL:PCRA_LEUCI (SWALL:Q9S3Q0) (749 aa) fasta scores: E(): 2.8e-96, 38.98% id in 785 aa, and to Bacteroides thetaiotaomicron ATP-dependent DNA helicase BT0657 SWALL:AAO75764 (EMBL:AE016928) (788 aa) fasta scores: E(): 0, 85.78% id in 788 aa; putative helicase 2982194 3287428 BF9343_2474 Bacteroides fragilis NCTC 9343 putative helicase YP_212179.1 2979834 R 272559 CDS YP_212180.1 60682036 3287245 2982352..2982933 1 NC_003228.3 Similar to Bacteroides fragilis superoxide dismutase [Fe] SodB or Sod SWALL:SODF_BACFR (SWALL:P53638) (193 aa) fasta scores: E(): 1.2e-77, 99.48% id in 193 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri superoxide dismutase [Fe] SodB or B1656 or C2050 or Z2678 or ECS2365 or SF1684 or S1816 SWALL:SODF_ECOLI (SWALL:P09157) (192 aa) fasta scores: E(): 1.6e-37, 51.04% id in 192 aa; superoxide dismutase [Fe] 2982933 sodB 3287245 sodB Bacteroides fragilis NCTC 9343 superoxide dismutase [Fe] YP_212180.1 2982352 D 272559 CDS YP_212181.1 60682037 3287401 2983303..2983500 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ThiS protein, involved in thiamine biosynthesis BT0653 SWALL:Q8AA12 (EMBL:AE016928) (66 aa) fasta scores: E(): 7.7e-18, 77.27% id in 66 aa, and to Escherichia coli ThiS protein or ThiG1 or B3991.1 SWALL:THIS_ECOLI (SWALL:O32583) (66 aa) fasta scores: E(): 0.0013, 28.78% id in 66 aa; putative thiamine biosynthesis-related protein 2983500 3287401 BF9343_2476 Bacteroides fragilis NCTC 9343 putative thiamine biosynthesis-related protein YP_212181.1 2983303 D 272559 CDS YP_212182.1 60682038 3287400 2983504..2984118 1 NC_003228.3 Similar to Bacillus subtilis thiamine-phosphate pyrophosphorylase ThiE or ThiC or Ipa-26D SWALL:THIE_BACSU (SWALL:P39594) (222 aa) fasta scores: E(): 6.6e-15, 32.84% id in 204 aa, and to Bacteroides thetaiotaomicron putative thiamine-phosphate pyrophosphorylase BT0652 SWALL:AAO75759 (EMBL:AE016928) (209 aa) fasta scores: E(): 1e-59, 83.33% id in 204 aa; putative thiamine-phosphate pyrophosphorylase 2984118 3287400 BF9343_2477 Bacteroides fragilis NCTC 9343 putative thiamine-phosphate pyrophosphorylase YP_212182.1 2983504 D 272559 CDS YP_212183.1 60682039 3287146 2984260..2985036 1 NC_003228.3 Similar to Escherichia coli thiazole biosynthesis protein ThiG or B3991 SWALL:THIG_ECOLI (SWALL:P30139) (256 aa) fasta scores: E(): 3.8e-54, 63.63% id in 253 aa, and to Bacteroides thetaiotaomicron thiazole biosynthesis protein ThiG or BT0651 SWALL:AAO75758 (EMBL:AE016928) (257 aa) fasta scores: E(): 1.2e-79, 89.45% id in 256 aa; thiazole biosynthesis protein ThiG 2985036 thiG 3287146 thiG Bacteroides fragilis NCTC 9343 thiazole biosynthesis protein ThiG YP_212183.1 2984260 D 272559 CDS YP_212184.1 60682040 3287417 2985122..2986816 1 NC_003228.3 Similar to Escherichia coli thiamine biosynthesis protein ThiC or B3994 SWALL:THIC_ECOLI (SWALL:P30136) (631 aa) fasta scores: E(): 3.7e-121, 62.58% id in 580 aa, and to Bacteroides thetaiotaomicron thiamine biosynthesis protein ThiC BT0650 SWALL:AAO75757 (EMBL:AE016928) (565 aa) fasta scores: E(): 0, 91.99% id in 562 aa; thiamine biosynthesis protein ThiC 2986816 thiC 3287417 thiC Bacteroides fragilis NCTC 9343 thiamine biosynthesis protein ThiC YP_212184.1 2985122 D 272559 CDS YP_212185.1 60682041 3287411 2986818..2987372 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4505 SWALL:AAO79610 (EMBL:AE016945) (180 aa) fasta scores: E(): 4.6e-20, 43.15% id in 146 aa; hypothetical protein 2987372 3287411 BF9343_2480 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212185.1 2986818 D 272559 CDS YP_212186.1 60682042 3287388 2987374..2988498 1 NC_003228.3 Similar to Escherichia coli thiazole biosynthesis protein ThiH or B3990 SWALL:THIH_ECOLI (SWALL:P30140) (376 aa) fasta scores: E(): 3.5e-67, 46.34% id in 369 aa, and to Bacteroides thetaiotaomicron thiamine biosynthesis protein ThiH BT0649 SWALL:AAO75756 (EMBL:AE016928) (374 aa) fasta scores: E(): 6.2e-136, 89.18% id in 370 aa; thiazole biosynthesis protein ThiH 2988498 thiH 3287388 thiH Bacteroides fragilis NCTC 9343 thiazole biosynthesis protein ThiH YP_212186.1 2987374 D 272559 CDS YP_212187.1 60682043 3287431 2988521..2989222 1 NC_003228.3 Similar to Synechococcus sp. MPT-synthase sulfurylase MoeB SWALL:O54307 (EMBL:Y16560) (391 aa) fasta scores: E(): 7.3e-33, 50% id in 224 aa, and to Bacteroides thetaiotaomicron molybdopterin biosynthesis protein BT0648 SWALL:AAO75755 (EMBL:AE016928) (230 aa) fasta scores: E(): 2.4e-64, 75.75% id in 231 aa; putative molybdopterin biosynthesis-related protein 2989222 3287431 BF9343_2482 Bacteroides fragilis NCTC 9343 putative molybdopterin biosynthesis-related protein YP_212187.1 2988521 D 272559 CDS YP_212188.1 60682044 3287407 2989284..2989892 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron thiamine phosphate pyrophosphorylase BT0647 SWALL:AAO75754 (EMBL:AE016928) (202 aa) fasta scores: E(): 5e-72, 88.61% id in 202 aa, and low similarity to Bacillus subtilis regulatory protein TenI SWALL:TENI_BACSU (SWALL:P25053) (205 aa) fasta scores: E(): 0.00019, 28.57% id in 210 aa; putative thiamine phosphate pyrophosphorylase 2989892 3287407 BF9343_2483 Bacteroides fragilis NCTC 9343 putative thiamine phosphate pyrophosphorylase YP_212188.1 2989284 D 272559 CDS YP_212189.1 60682045 3287410 complement(2989970..2990482) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0645 SWALL:AAO75752 (EMBL:AE016928) (171 aa) fasta scores: E(): 1.6e-37, 54.07% id in 172 aa; hypothetical protein 2990482 3287410 BF9343_2484 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212189.1 2989970 R 272559 CDS YP_212190.1 60682046 3287391 complement(2990684..2991253) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0646 SWALL:AAO75753 (EMBL:AE016928) (190 aa) fasta scores: E(): 1.1e-48, 69.11% id in 191 aa; hypothetical protein 2991253 3287391 BF9343_2485 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212190.1 2990684 R 272559 CDS YP_212191.1 60682047 3289338 complement(2991466..2994186) 1 NC_003228.3 Similar to Clostridium symbiosum pyruvate,phosphate dikinase PpdK SWALL:PODK_CLOSY (SWALL:P22983) (873 aa) fasta scores: E(): 1.8e-129, 58.58% id in 903 aa, and to Bacteroides thetaiotaomicron pyruvate phosphate dikinase BT0644 SWALL:AAO75751 (EMBL:AE016928) (906 aa) fasta scores: E(): 0, 93.48% id in 905 aa; pyruvate,phosphate dikinase 2994186 ppdK 3289338 ppdK Bacteroides fragilis NCTC 9343 pyruvate,phosphate dikinase YP_212191.1 2991466 R 272559 CDS YP_212192.1 60682048 3287416 2994453..2995871 1 NC_003228.3 Similar to Oceanobacillus iheyensis RNA methyltransferase OB0768 SWALL:Q8ES75 (EMBL:AP004595) (459 aa) fasta scores: E(): 2.7e-38, 33.61% id in 476 aa, and to Bacteroides thetaiotaomicron RNA methyltransferase BT0643 SWALL:Q8AA22 (EMBL:AE016928) (454 aa) fasta scores: E(): 3.2e-167, 91.63% id in 454 aa; putative RNA methyltransferase 2995871 3287416 BF9343_2487 Bacteroides fragilis NCTC 9343 putative RNA methyltransferase YP_212192.1 2994453 D 272559 CDS YP_212193.1 60682049 3287418 2995882..2996799 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron RNA pseudouridylate synthase BT0642 SWALL:AAO75749 (EMBL:AE016928) (306 aa) fasta scores: E(): 7.6e-101, 84.86% id in 304 aa, and to Clostridium tetani ribosomal large subunit pseudouridine synthase D CTC01614 SWALL:AAO36157 (EMBL:AE015941) (307 aa) fasta scores: E(): 1.5e-25, 34.68% id in 297 aa; putative RNA pseudouridylate synthase 2996799 3287418 BF9343_2488 Bacteroides fragilis NCTC 9343 putative RNA pseudouridylate synthase YP_212193.1 2995882 D 272559 CDS YP_212194.1 60682050 3287393 complement(2996962..2997366) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0641 SWALL:AAO75748 (EMBL:AE016928) (133 aa) fasta scores: E(): 5.6e-10, 35.15% id in 128 aa; putative lipoprotein 2997366 3287393 BF9343_2489 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212194.1 2996962 R 272559 CDS YP_212195.1 60682051 3287394 complement(2997389..2997823) 1 NC_003228.3 putative lipoprotein 2997823 3287394 BF9343_2490 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212195.1 2997389 R 272559 CDS YP_212196.1 60682052 3287399 complement(2998412..2998558) 1 NC_003228.3 hypothetical protein 2998558 3287399 BF9343_2491 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212196.1 2998412 R 272559 CDS YP_212197.1 60682053 3287389 complement(2998759..2999022) 1 NC_003228.3 Similar to Archaeoglobus fulgidus hypothetical protein AF2434 SWALL:O30237 (EMBL:AE001107) (92 aa) fasta scores: E(): 4.9e-10, 39.24% id in 79 aa, and to Thermotoga maritima hypothetical protein TM1796 SWALL:Q9X2B6 (EMBL:AE001817) (87 aa) fasta scores: E(): 1.5e-09, 41.37% id in 87 aa; hypothetical protein 2999022 3287389 BF9343_2492 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212197.1 2998759 R 272559 CDS YP_212198.1 60682054 3287397 complement(2999649..3000320) 1 NC_003228.3 hypothetical protein 3000320 3287397 BF9343_2494 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212198.1 2999649 R 272559 CDS YP_212199.1 60682055 3288888 3001142..3001996 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative methionine aminopeptidase A BT0638 SWALL:AAO75745 (EMBL:AE016928) (307 aa) fasta scores: E(): 9.4e-101, 89.08% id in 284 aa, and to Clostridium perfringens probable methionine aminopeptidase Map or CPE1382 SWALL:Q8XKL2 (EMBL:AP003190) (289 aa) fasta scores: E(): 3.5e-67, 64.52% id in 265 aa, and to Chlamydia trachomatis methionine aminopeptidase Map or CT851 SWALL:AMPM_CHLTR (SWALL:O84859) (291 aa) fasta scores: E(): 2e-41, 44.48% id in 272 aa; putative aminopeptidase 3001996 3288888 BF9343_2495 Bacteroides fragilis NCTC 9343 putative aminopeptidase YP_212199.1 3001142 D 272559 CDS YP_212200.1 60682056 3287378 3001997..3003223 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0637 SWALL:Q8AA28 (EMBL:AE016928) (409 aa) fasta scores: E(): 7.8e-117, 90.46% id in 409 aa, and to Xylella fastidiosa DNA recombination protein homolog RmuC or XF0413 SWALL:RMUC_XYLFA (SWALL:Q9PG89) (456 aa) fasta scores: E(): 2.6e-50, 44.72% id in 398 aa; putative DNA recombination-related protein 3003223 3287378 BF9343_2496 Bacteroides fragilis NCTC 9343 putative DNA recombination-related protein YP_212200.1 3001997 D 272559 CDS YP_212201.1 60682057 3287377 3003284..3003997 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0781 SWALL:AAO75888 (EMBL:AE016929) (240 aa) fasta scores: E(): 6.1e-24, 39.56% id in 230 aa; hypothetical protein 3003997 3287377 BF9343_2497 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212201.1 3003284 D 272559 CDS YP_212202.1 60682058 3287386 complement(3004197..3005510) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron Na+/H+ antiporter 1 BT0634 SWALL:AAO75741 (EMBL:AE016928) (439 aa) fasta scores: E(): 3.5e-135, 80.77% id in 437 aa, and to Escherichia coli Na(+)/H(+) antiporter 1 NhaA or Ant or B0019 SWALL:NHAA_ECOLI (SWALL:P13738) (388 aa) fasta scores: E(): 3.1e-35, 41.58% id in 428 aa; putative Na+/H+ antiporter 3005510 3287386 BF9343_2498 Bacteroides fragilis NCTC 9343 putative Na+/H+ antiporter YP_212202.1 3004197 R 272559 CDS YP_212203.1 60682059 3287379 complement(3005555..3006733) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative Na+/H+ exchange protein BT0633 SWALL:AAO75740 (EMBL:AE016928) (381 aa) fasta scores: E(): 3.2e-137, 86.54% id in 379 aa; putative transport-related membrane protein 3006733 3287379 BF9343_2499 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_212203.1 3005555 R 272559 CDS YP_212204.1 60682060 3287381 complement(3006879..3008660) 1 NC_003228.3 Similar to Bacillus subtilis GTP-binding protein LepA SWALL:LEPA_BACSU (SWALL:P37949) (612 aa) fasta scores: E(): 2.5e-129, 57.57% id in 594 aa, and to Bacteroides thetaiotaomicron GTP-binding protein, membrane gtpase LepA BT0632 SWALL:AAO75739 (EMBL:AE016928) (593 aa) fasta scores: E(): 1.3e-202, 96.12% id in 593 aa; putative GTP-binding protein 3008660 3287381 BF9343_2500 Bacteroides fragilis NCTC 9343 putative GTP-binding protein YP_212204.1 3006879 R 272559 CDS YP_212205.1 60682061 3287366 complement(3008786..3008986) 1 NC_003228.3 hypothetical protein 3008986 3287366 BF9343_2501 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212205.1 3008786 R 272559 CDS YP_212206.1 60682062 3287367 complement(3009133..3009597) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0631 SWALL:AAO75738 (EMBL:AE016928) (152 aa) fasta scores: E(): 9.9e-48, 81.45% id in 151 aa, and to Chlorobium tepidum hypothetical protein CT0642 SWALL:Q8KEP4 (EMBL:AE012837) (149 aa) fasta scores: E(): 6.2e-09, 34.45% id in 148 aa; hypothetical protein 3009597 3287367 BF9343_2502 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212206.1 3009133 R 272559 CDS YP_212207.1 60682063 3287371 3009667..3010077 1 NC_003228.3 Similar to Vibrio parahaemolyticus conserved hypothetical protein VP2732 SWALL:BAC60995 (EMBL:AP005082) (139 aa) fasta scores: E(): 9.3e-26, 60% id in 130 aa, and to Pseudomonas syringae conserved hypothetical protein TIGR00149 PSPTO0219 SWALL:AAO53765 (EMBL:AE016856) (141 aa) fasta scores: E(): 5.2e-23, 53.07% id in 130 aa; hypothetical protein 3010077 3287371 BF9343_2503 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212207.1 3009667 D 272559 CDS YP_212208.1 60682064 3285173 complement(3010079..3010840) 1 NC_003228.3 Similar to Bacillus subtilis exodeoxyribonuclease ExoA SWALL:EXOA_BACSU (SWALL:P37454) (252 aa) fasta scores: E(): 8.1e-45, 46.45% id in 254 aa, and to Bacteroides thetaiotaomicron exodeoxyribonuclease BT0630 SWALL:AAO75737 (EMBL:AE016928) (253 aa) fasta scores: E(): 4.5e-101, 92.06% id in 252 aa; exodeoxyribonuclease 3010840 exoA 3285173 exoA Bacteroides fragilis NCTC 9343 exodeoxyribonuclease YP_212208.1 3010079 R 272559 CDS YP_212209.1 60682065 3287387 complement(3010851..3012104) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron Mn2+ and Fe2+ transport protein BT0629 SWALL:AAO75736 (EMBL:AE016928) (418 aa) fasta scores: E(): 4.5e-151, 94.48% id in 417 aa, and to Bacillus subtilis manganese transport protein MntH SWALL:MNTH_BACSU (SWALL:P96593) (425 aa) fasta scores: E(): 5.2e-42, 34.51% id in 394 aa; putative manganese transport-related membrane protein 3012104 3287387 BF9343_2505 Bacteroides fragilis NCTC 9343 putative manganese transport-related membrane protein YP_212209.1 3010851 R 272559 CDS YP_212210.1 60682066 3287368 3012247..3012639 1 NC_003228.3 putative lipoprotein 3012639 3287368 BF9343_2506 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212210.1 3012247 D 272559 CDS YP_212211.1 60682067 3287370 complement(3012789..3013034) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0628 SWALL:AAO75735 (EMBL:AE016928) (81 aa) fasta scores: E(): 4.4e-25, 77.77% id in 81 aa, and to Clostridium acetobutylicum hypothetical protein CAC2387 SWALL:Q97GI0 (EMBL:AE007738) (84 aa) fasta scores: E(): 2.9e-15, 51.89% id in 79 aa; hypothetical protein 3013034 3287370 BF9343_2507 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212211.1 3012789 R 272559 CDS YP_212212.1 60682068 3287356 complement(3013034..3013771) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, with a conserved domain of unknown function BT0627 SWALL:AAO75734 (EMBL:AE016928) (247 aa) fasta scores: E(): 1.3e-64, 74.08% id in 247 aa, and to Helicobacter pylori hypothetical protein HP0162 SWALL:Y162_HELPY (SWALL:O24970) (240 aa) fasta scores: E(): 6e-30, 42.14% id in 242 aa; hypothetical protein 3013771 3287356 BF9343_2508 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212212.1 3013034 R 272559 CDS YP_212213.1 60682069 3287358 complement(3013867..3016329) 1 NC_003228.3 Similar to Bacillus subtilis phenylalanyl-tRNA synthetase beta chain PheT SWALL:SYFB_BACSU (SWALL:P17922) (804 aa) fasta scores: E(): 7.1e-66, 35.57% id in 832 aa, and to Bacteroides thetaiotaomicron phenylalanyl-tRNA synthetase beta chain BT0626 SWALL:AAO75733 (EMBL:AE016928) (820 aa) fasta scores: E(): 0, 91.22% id in 820 aa; putative phenylalanyl-tRNA synthetase beta chain 3016329 3287358 BF9343_2509 Bacteroides fragilis NCTC 9343 putative phenylalanyl-tRNA synthetase beta chain YP_212213.1 3013867 R 272559 CDS YP_212214.1 60682070 3287374 complement(3016479..3017432) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase WcfL SWALL:Q9XDJ1 (EMBL:AF048749) (318 aa) fasta scores: E(): 2e-113, 85.3% id in 313 aa, and to Rickettsia prowazekii undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase RP825 SWALL:Q9ZCD2 (EMBL:AJ235273) (326 aa) fasta scores: E(): 3.6e-18, 28.35% id in 328 aa; putative LPS biosynthesis related glycosyltransferase 3017432 3287374 BF9343_2510 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_212214.1 3016479 R 272559 CDS YP_212215.1 60682071 3287360 complement(3017550..3018446) 1 NC_003228.3 Similar to Edwardsiella ictaluri UDP-glucose 4-epimerase WbeIT SWALL:Q937X6 (EMBL:AY057452) (323 aa) fasta scores: E(): 6.3e-16, 30.1% id in 299 aa, and to Vibrio cholerae UDP-glucose 4-epimerase GalE or WbfT SWALL:GALE_VIBCH (SWALL:Q56623) (328 aa) fasta scores: E(): 1.7e-10, 26.77% id in 310 aa; putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase 3018446 3287360 BF9343_2511 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase YP_212215.1 3017550 R 272559 CDS YP_212216.1 60682072 3287362 complement(3018465..3019496) 1 NC_003228.3 Similar to Edwardsiella ictaluri putative glycosyltransferase WbeIH SWALL:Q937X7 (EMBL:AY057452) (345 aa) fasta scores: E(): 3.3e-20, 30.33% id in 356 aa, and to Pyrococcus furiosus glycosyltransferase PF0307 SWALL:Q8U3Z3 (EMBL:AE010155) (336 aa) fasta scores: E(): 5e-11, 26.6% id in 342 aa; putative LPS biosynthesis related glycosyltransferase 3019496 3287362 BF9343_2512 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_212216.1 3018465 R 272559 CDS YP_212217.1 60682073 3287345 complement(3019468..3020610) 1 NC_003228.3 Similar to Lactobacillus plantarum glycosyltransferase Cps1G or LP_1183 SWALL:CAD63696 (EMBL:AL935255) (376 aa) fasta scores: E(): 9.7e-15, 23.21% id in 379 aa, and to Clostridium perfringens probable lipopolysaccharide biosynthesis protein CPE0502 SWALL:Q8XN36 (EMBL:AP003187) (367 aa) fasta scores: E(): 3.5e-14, 25.82% id in 364 aa; putative LPS biosynthesis related glycosyltransferase 3020610 3287345 BF9343_2513 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_212217.1 3019468 R 272559 CDS YP_212218.1 60682074 3287359 complement(3020607..3021704) 1 NC_003228.3 Similar to Yersinia enterocolitica WbcM protein SWALL:Q56916 (EMBL:Z47767) (358 aa) fasta scores: E(): 1.1e-50, 42.34% id in 359 aa, and to Erwinia amylovora amylovoran biosynthesis glycosyl transferase AmsD SWALL:AMSD_ERWAM (SWALL:Q46634) (351 aa) fasta scores: E(): 7.6e-30, 31.68% id in 363 aa; putative LPS biosynthesis related glycosyltransferase 3021704 3287359 BF9343_2514 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_212218.1 3020607 R 272559 CDS YP_212219.1 60682075 3287363 complement(3021697..3022923) 1 NC_003228.3 Similar to Escherichia coli putative O-antigen polymerase Wzy SWALL:O30626 (EMBL:AF013583) (413 aa) fasta scores: E(): 0.00029, 20.33% id in 423 aa, and to Escherichia coli putative colanic acid polymerase WcaD or B2056 SWALL:WCAD_ECOLI (SWALL:P71238) (405 aa) fasta scores: E(): 0.39, 25.58% id in 426 aa; putative LPS biosynthesis related polysaccharide polymerase 3022923 3287363 BF9343_2515 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related polysaccharide polymerase YP_212219.1 3021697 R 272559 CDS YP_212220.1 60682076 3287347 complement(3022958..3023686) 1 NC_003228.3 Similar to Methanosarcina mazei glycosyltransferase involved in cell wall biogenesis MM0653 SWALL:Q8PZ41 (EMBL:AE013290) (248 aa) fasta scores: E(): 1.2e-25, 39.49% id in 238 aa, and to Escherichia coli putative colanic acid biosynthesis glycosyl transferase WcaE or B2055 SWALL:WCAE_ECOLI (SWALL:P71239) (248 aa) fasta scores: E(): 2.8e-14, 31% id in 229 aa; putative LPS biosynthesis related glycosyltransferase 3023686 3287347 BF9343_2516 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_212220.1 3022958 R 272559 CDS YP_212221.1 60682077 3287349 complement(3023693..3025039) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 O antigen flippase Wzx or Z3201 or ECS2842 SWALL:O85337 (EMBL:AF061251) (463 aa) fasta scores: E(): 1.1e-23, 26.65% id in 409 aa, and to Salmonella typhi putative O-antigen transporter RfbX or STY2297 or T0785 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 4.9e-17, 25.92% id in 432 aa; putative LPS biosynthesis related polysaccharide transporter/flippase 3025039 3287349 BF9343_2517 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related polysaccharide transporter/flippase YP_212221.1 3023693 R 272559 CDS YP_212222.1 60682078 3287350 complement(3025063..3025959) 1 NC_003228.3 Similar to Clostridium acetobutylicum glycosyltransferase CAC2346 SWALL:Q97GM0 (EMBL:AE007735) (273 aa) fasta scores: E(): 8.8e-15, 28.83% id in 274 aa, and to Campylobacter jejuni putative galactosyltransferase SWALL:Q8KWR0 (EMBL:AF400669) (323 aa) fasta scores: E(): 1.8e-14, 29.83% id in 295 aa; putative LPS biosynthesis related glycosyltransferase 3025959 3287350 BF9343_2518 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_212222.1 3025063 R 272559 CDS YP_212223.1 60682079 3289287 complement(3025952..3026971) 1 NC_003228.3 Similar to Salmonella typhi CDP-tyvelose-2-epimerase RfbE or STY2298 or T0784 SWALL:RFBE_SALTI (SWALL:P14169) (338 aa) fasta scores: E(): 4.6e-81, 61.24% id in 338 aa, and to Yersinia pseudotuberculosis CDP-tyvelose epimerase Tyv SWALL:Q56944 (EMBL:AF461769) (338 aa) fasta scores: E(): 9.6e-82, 59.17% id in 338 aa; DNTP-hexose dehydratase-epimerase 3026971 rfbE 3289287 rfbE Bacteroides fragilis NCTC 9343 DNTP-hexose dehydratase-epimerase YP_212223.1 3025952 R 272559 CDS YP_212224.1 60682080 3287353 complement(3026979..3027869) 1 NC_003228.3 Similar to Lactococcus lactis UDP-glucose 4-epimerase YcbD or ll0211 SWALL:Q9CIZ5 (EMBL:AE006259) (313 aa) fasta scores: E(): 1.9e-15, 27.5% id in 309 aa, and to Salmonella muenchen CDPp-abequose synthase RfbJ SWALL:RFBJ_SALMU (SWALL:Q00329) (293 aa) fasta scores: E(): 6.9e-11, 25.33% id in 300 aa; putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase 3027869 3287353 BF9343_2520 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase YP_212224.1 3026979 R 272559 CDS YP_212225.1 60682081 3287348 complement(3027866..3028945) 1 NC_003228.3 Similar to Salmonella typhimurium CDP-glucose 4,6-dehydratase RfbG or STM2091 SWALL:RFBG_SALTY (SWALL:P26397) (359 aa) fasta scores: E(): 1.1e-69, 51.28% id in 351 aa, and to Yersinia pseudotuberculosis CDP-D-glucose-4,6-dehydratase AscB or DdhB SWALL:Q57329 (EMBL:L33181) (357 aa) fasta scores: E(): 1.2e-70, 51.41% id in 354 aa; putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase 3028945 3287348 BF9343_2521 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase YP_212225.1 3027866 R 272559 CDS YP_212226.1 60682082 3287351 complement(3028950..3029726) 1 NC_003228.3 Similar to Salmonella typhimurium glucose-1-phosphate cytidylyltransferase RfbF or STM2092 SWALL:RFBF_SALTY (SWALL:P26396) (257 aa) fasta scores: E(): 7.9e-59, 58.3% id in 259 aa, and to Bacteroides thetaiotaomicron glucose-1-phosphate cytidylyltransferase BT1351 SWALL:AAO76458 (EMBL:AE016931) (257 aa) fasta scores: E(): 5.6e-76, 70.27% id in 259 aa; putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase 3029726 3287351 BF9343_2522 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase YP_212226.1 3028950 R 272559 CDS YP_212227.1 60682083 3287352 complement(3029723..3031060) 1 NC_003228.3 Similar to Yersinia pseudotuberculosis CDP-4-keto-6-deoxy-D-glucose-3-dehydrase DdhC SWALL:Q57323 (EMBL:AF461769) (437 aa) fasta scores: E(): 6.2e-98, 56.43% id in 443 aa, and to Salmonella typhimurium lipopolysaccharide biosynthesis protein RfbH or STM2090 SWALL:RFBH_SALTY (SWALL:P26398) (437 aa) fasta scores: E(): 3.4e-94, 54.92% id in 437 aa; putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase 3031060 3287352 BF9343_2523 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase YP_212227.1 3029723 R 272559 CDS YP_212228.1 60682084 3287763 complement(3031229..3031711) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical 18.5 kDa protein UpbZ SWALL:Q9F768 (EMBL:AF285774) (161 aa) fasta scores: E(): 2.1e-39, 67.09% id in 155 aa, and to previously sequenced Bacteroides fragilis UpdZ SWALL:Q8VSS8 (EMBL:AF366394) (160 aa) fasta scores: E(): 4.7e-33, 57.5% id in 160 aa; putative transcriptional regulatory protein 3031711 upeZ 3287763 upeZ Bacteroides fragilis NCTC 9343 putative transcriptional regulatory protein YP_212228.1 3031229 R 272559 CDS YP_212229.1 60682085 3287293 complement(3031735..3032253) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative transcriptional regulatory protein UpbY SWALL:Q9F769 (EMBL:AF285774) (174 aa) fasta scores: E(): 7.4e-48, 68.39% id in 174 aa, and to previously sequenced Bacteroides fragilis UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 1.9e-47, 70.76% id in 171 aa; putative transcriptional regulatory protein 3032253 upeY 3287293 upeY Bacteroides fragilis NCTC 9343 putative transcriptional regulatory protein YP_212229.1 3031735 R 272559 CDS YP_212230.1 60682086 3288901 complement(3033395..3036244) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2128 SWALL:AAO77235 (EMBL:AE016934) (981 aa) fasta scores: E(): 0, 76.73% id in 950 aa, and to Oryza sativa hypothetical protein OSJNBA0090O10.21 SWALL:Q8GZW3 (EMBL:AC134237) (1072 aa) fasta scores: E(): 6.5e-17, 24.43% id in 970 aa; hypothetical protein 3036244 3288901 BF9343_2526 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212230.1 3033395 R 272559 CDS YP_212231.1 60682087 3287338 complement(3036249..3036578) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1276 SWALL:AAO76383 (EMBL:AE016931) (130 aa) fasta scores: E(): 5.6e-21, 57.65% id in 111 aa, and to Xanthomonas axonopodis hypothetical protein XAC4189 SWALL:Q8PEZ9 (EMBL:AE012069) (119 aa) fasta scores: E(): 1.2e-11, 36.93% id in 111 aa; hypothetical protein 3036578 3287338 BF9343_2527 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212231.1 3036249 R 272559 CDS YP_212232.1 60682088 3287343 complement(3036608..3038110) 1 NC_003228.3 Similar to Bacillus subtilis replicative DNA helicase DnaC SWALL:DNAC_BACSU (SWALL:P37469) (454 aa) fasta scores: E(): 2.6e-68, 43.6% id in 461 aa, and to Bacteroides thetaiotaomicron DNA helicase BT0625 SWALL:Q8AA40 (EMBL:AE016928) (517 aa) fasta scores: E(): 5.2e-173, 91.86% id in 504 aa; putative DNA helicase 3038110 3287343 BF9343_2528 Bacteroides fragilis NCTC 9343 putative DNA helicase YP_212232.1 3036608 R 272559 CDS YP_212233.1 60682089 3287335 3038333..3039157 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or Ipk or B1208 or Z1979 or ECS1713 SWALL:ISPE_ECOLI (SWALL:P24209) (283 aa) fasta scores: E(): 9.4e-15, 31.55% id in 263 aa, and to Bacteroides thetaiotaomicron 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase BT0624 SWALL:AAO75731 (EMBL:AE016928) (274 aa) fasta scores: E(): 7.2e-77, 70.43% id in 274 aa; putative terpenoid biosynthesis-related protein 3039157 3287335 BF9343_2529 Bacteroides fragilis NCTC 9343 putative terpenoid biosynthesis-related protein YP_212233.1 3038333 D 272559 CDS YP_212234.1 60682090 3287339 3039180..3040424 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3056 SWALL:AAO78162 (EMBL:AE016938) (409 aa) fasta scores: E(): 1.8e-44, 33.25% id in 406 aa; putative lipoprotein 3040424 3287339 BF9343_2530 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212234.1 3039180 D 272559 CDS YP_212235.1 60682091 3287341 3040558..3041817 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3056 SWALL:AAO78162 (EMBL:AE016938) (409 aa) fasta scores: E(): 1.8e-31, 35.23% id in 420 aa; putative lipoprotein 3041817 3287341 BF9343_2531 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212235.1 3040558 D 272559 CDS YP_212236.1 60682092 3286742 complement(3042142..3043176) 1 NC_003228.3 Similar to Bacillus subtilis UDP-glucose 4-epimerase GalE SWALL:GALE_BACSU (SWALL:P55180) (339 aa) fasta scores: E(): 5.6e-58, 50.45% id in 331 aa, and to Bacteroides thetaiotaomicron putative UDP-glucose 4-epimerase BT0623 SWALL:AAO75730 (EMBL:AE016928) (344 aa) fasta scores: E(): 5.5e-119, 94.76% id in 344 aa, and to Haemophilus influenzae UDP-glucose 4-epimerase GalE or HI0351 SWALL:GALE_HAEIN (SWALL:P24325) (338 aa) fasta scores: E(): 1.3e-54, 46.98% id in 332 aa; UDP-glucose 4-epimerase 3043176 galE 3286742 galE Bacteroides fragilis NCTC 9343 UDP-glucose 4-epimerase YP_212236.1 3042142 R 272559 CDS YP_212237.1 60682093 3289306 complement(3043381..3043953) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 electron transport complex protein RnfA or B1627 or C2019 or Z2633 or ECS2336 SWALL:RNFA_ECOLI (SWALL:P76181) (193 aa) fasta scores: E(): 3.8e-37, 52.38% id in 189 aa, and to Bacteroides thetaiotaomicron Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein RnfA BT0622 SWALL:AAO75729 (EMBL:AE016928) (190 aa) fasta scores: E(): 6.5e-64, 94.73% id in 190 aa; electron transport complex protein RnfA 3043953 rnfA 3289306 rnfA Bacteroides fragilis NCTC 9343 electron transport complex protein RnfA YP_212237.1 3043381 R 272559 CDS YP_212238.1 60682094 3289311 complement(3043967..3044554) 1 NC_003228.3 Similar to Escherichia coli electron transport complex protein RnfE or B1632 SWALL:RNFE_ECOLI (SWALL:P77179) (231 aa) fasta scores: E(): 4.9e-26, 44.27% id in 201 aa, and to Bacteroides thetaiotaomicron Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein RnfE BT0621 SWALL:AAO75728 (EMBL:AE016928) (194 aa) fasta scores: E(): 1.4e-67, 92.78% id in 194 aa; electron transport complex protein RnfE 3044554 rnfE 3289311 rnfE Bacteroides fragilis NCTC 9343 electron transport complex protein RnfE YP_212238.1 3043967 R 272559 CDS YP_212239.1 60682095 3289275 complement(3044572..3045240) 1 NC_003228.3 Similar to Escherichia coli electron transport complex protein RnfG or B1631 SWALL:RNFG_ECOLI (SWALL:P77285) (206 aa) fasta scores: E(): 1.5e-10, 34.37% id in 192 aa, and to Bacteroides thetaiotaomicron Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein RnfG BT0620 SWALL:Q8AA45 (EMBL:AE016928) (227 aa) fasta scores: E(): 5.8e-40, 80% id in 210 aa; electron transport complex protein RnfG 3045240 rnfG 3289275 rnfG Bacteroides fragilis NCTC 9343 electron transport complex protein RnfG YP_212239.1 3044572 R 272559 CDS YP_212240.1 60682096 3289310 complement(3045237..3046229) 1 NC_003228.3 Similar to Escherichia coli electron transport complex protein RnfD or B1630 SWALL:RNFD_ECOLI (SWALL:P76182) (352 aa) fasta scores: E(): 1.1e-16, 35.63% id in 348 aa, and to Bacteroides thetaiotaomicron Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein RnfD BT0619 SWALL:AAO75726 (EMBL:AE016928) (330 aa) fasta scores: E(): 3.4e-115, 89.39% id in 330 aa; electron transport complex protein RnfD 3046229 rnfD 3289310 rnfD Bacteroides fragilis NCTC 9343 electron transport complex protein RnfD YP_212240.1 3045237 R 272559 CDS YP_212241.1 60682097 3287828 complement(3046235..3047572) 1 NC_003228.3 Similar to Rhodobacter capsulatus electron transport complex protein RnfC SWALL:RNFC_RHOCA (SWALL:Q52716) (519 aa) fasta scores: E(): 6.9e-57, 41.94% id in 453 aa, and to Fusobacterium nucleatum nitrogen fixation iron-sulphur protein RnfC FN1596 SWALL:Q8RIJ6 (EMBL:AE010467) (441 aa) fasta scores: E(): 4.8e-67, 47.05% id in 442 aa; electron transport complex protein 3047572 rnfC 3287828 rnfC Bacteroides fragilis NCTC 9343 electron transport complex protein YP_212241.1 3046235 R 272559 CDS YP_212242.1 60682098 3287319 complement(3047609..3048481) 1 NC_003228.3 Similar to Clostridium tetani RnfB/polyferredoxin RnfB or CTC01024 SWALL:AAO35610 (EMBL:AE015939) (290 aa) fasta scores: E(): 1.2e-44, 46.41% id in 293 aa, and to Escherichia coli electron transport complex protein RnfB or B1628 SWALL:RNFB_ECOLI (SWALL:P77223) (192 aa) fasta scores: E(): 6.3e-11, 31.93% id in 191 aa; putative electron transport complex protein 3048481 3287319 BF9343_2538 Bacteroides fragilis NCTC 9343 putative electron transport complex protein YP_212242.1 3047609 R 272559 CDS YP_212243.1 60682099 3287318 complement(3048487..3048906) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0616 SWALL:AAO75723 (EMBL:AE016928) (141 aa) fasta scores: E(): 9.3e-32, 62.31% id in 138 aa; hypothetical protein 3048906 3287318 BF9343_2539 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212243.1 3048487 R 272559 CDS YP_212244.1 60682100 3287344 complement(3049157..3049561) 1 NC_003228.3 hypothetical protein 3049561 3287344 BF9343_2540 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212244.1 3049157 R 272559 CDS YP_212245.1 60682101 3287328 complement(3049690..3051123) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0591 SWALL:AAO75698 (EMBL:AE016928) (483 aa) fasta scores: E(): 1.3e-125, 64.87% id in 484 aa; hypothetical protein 3051123 3287328 BF9343_2541 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212245.1 3049690 R 272559 CDS YP_212246.1 60682102 3287327 complement(3051205..3051465) 1 NC_003228.3 hypothetical protein 3051465 3287327 BF9343_2542 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212246.1 3051205 R 272559 CDS YP_212247.1 60682103 3289289 3051507..3053108 1 NC_003228.3 Similar to Bacillus subtilis CTP synthase PyrG or CtrA or BSU37150 SWALL:PYRG_BACSU (SWALL:P13242) (535 aa) fasta scores: E(): 7.3e-114, 53.77% id in 530 aa, and to Clostridium acetobutylicum CTP synthase PyrG or CAC2892 SWALL:PYRG_CLOAB (SWALL:Q97F61) (535 aa) fasta scores: E(): 9.6e-114, 55.38% id in 529 aa; CTP synthase 3053108 pyrG 3289289 pyrG Bacteroides fragilis NCTC 9343 CTP synthase YP_212247.1 3051507 D 272559 CDS YP_212248.1 60682104 3287324 3053157..3055013 1 NC_003228.3 Similar to Chlorobium tepidum Oxa1/60 kDa IMP family protein CT0006 SWALL:Q8KGG2 (EMBL:AE012780) (590 aa) fasta scores: E(): 9.5e-49, 29.69% id in 613 aa, and to Escherichia coli 60 kDa inner-membrane protein YidC or B3705 SWALL:60IM_ECOLI (SWALL:P25714) (548 aa) fasta scores: E(): 1.3e-16, 23.57% id in 577 aa; hypothetical protein 3055013 3287324 BF9343_2544 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212248.1 3053157 D 272559 CDS YP_212249.1 60682105 3287334 3055102..3056433 1 NC_003228.3 Similar to Clostridium tetani Na+ driven multidrug efflux pump CTC01799 SWALL:AAO36324 (EMBL:AE015942) (455 aa) fasta scores: E(): 1.1e-24, 26.8% id in 429 aa, and to Leptospira interrogans conserved hypothetical protein LA3965 SWALL:Q8EZ91 (EMBL:AE011552) (473 aa) fasta scores: E(): 7.7e-23, 23.81% id in 441 aa; putative transpor-related membrane protein 3056433 3287334 BF9343_2545 Bacteroides fragilis NCTC 9343 putative transpor-related membrane protein YP_212249.1 3055102 D 272559 CDS YP_212250.1 60682106 3287303 3056507..3058615 1 NC_003228.3 Similar to Caulobacter crescentus prolyl oligopeptidase family protein CC1986 SWALL:Q9A6U7 (EMBL:AE005872) (683 aa) fasta scores: E(): 5e-71, 32.12% id in 663 aa, and to Shewanella oneidensis peptidase, putative SO4537 SWALL:Q8E8W6 (EMBL:AE015885) (675 aa) fasta scores: E(): 1.4e-55, 28.1% id in 669 aa, and to Xanthomonas arboricola pv. juglandis putative dipeptidyl aminopeptidase Pep1 SWALL:Q8L2E7 (EMBL:AF508804) (713 aa) fasta scores: E(): 1.5e-45, 28.55% id in 683 aa; putative exported aminopeptidase 3058615 3287303 BF9343_2546 Bacteroides fragilis NCTC 9343 putative exported aminopeptidase YP_212250.1 3056507 D 272559 CDS YP_212251.1 60682107 3287332 complement(3058716..3059711) 1 NC_003228.3 Similar to Leptospira interrogans conserved hypothetical protein LA0785 SWALL:Q8F805 (EMBL:AE011264) (347 aa) fasta scores: E(): 1.8e-30, 32.82% id in 329 aa, and to Yersinia pestis hypothetical protein YPO1228 or Y2960 SWALL:Q8ZGQ8 (EMBL:AJ414147) (342 aa) fasta scores: E(): 1.4e-28, 32.59% id in 270 aa; hypothetical protein 3059711 3287332 BF9343_2547 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212251.1 3058716 R 272559 CDS YP_212252.1 60682108 3287307 complement(3059863..3060942) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0583 SWALL:AAO75690 (EMBL:AE016928) (364 aa) fasta scores: E(): 2.2e-89, 65.36% id in 358 aa; hypothetical protein 3060942 3287307 BF9343_2548 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212252.1 3059863 R 272559 CDS YP_212253.1 60682109 3288889 complement(3060955..3061290) 1 NC_003228.3 Similar to Oceanobacillus iheyensis hypothetical conserved protein OB0567 SWALL:Q8ESQ4 (EMBL:AP004594) (109 aa) fasta scores: E(): 6.1e-12, 41.9% id in 105 aa, and to Caulobacter crescentus hypothetical protein CC3408 SWALL:Q9A2Z8 (EMBL:AE006001) (108 aa) fasta scores: E(): 4.1e-11, 38.23% id in 102 aa; putative PadR-family transcriptional regulatory protein 3061290 3288889 BF9343_2549 Bacteroides fragilis NCTC 9343 putative PadR-family transcriptional regulatory protein YP_212253.1 3060955 R 272559 CDS YP_212254.1 60682110 3287306 3061452..3061949 1 NC_003228.3 Similar to Oceanobacillus iheyensis hypothetical conserved protein OB1028 SWALL:Q8CUS9 (EMBL:AP004596) (161 aa) fasta scores: E(): 4.4e-07, 29.34% id in 167 aa, and to Bacillus subtilis protease synthase and sporulation negative regulatory protein Pai 1 PaiA or BSU32150 SWALL:PAIA_BACSU (SWALL:P21340) (171 aa) fasta scores: E(): 2.2e-05, 25.29% id in 170 aa; putative acetyltransferase 3061949 3287306 BF9343_2550 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_212254.1 3061452 D 272559 CDS YP_212255.1 60682111 3287315 complement(3062061..3063719) 1 NC_003228.3 Similar to Enterococcus faecalis di-/tripeptide transporter EF0440 SWALL:AAO80296 (EMBL:AE016948) (493 aa) fasta scores: E(): 2.7e-17, 25.17% id in 564 aa, and to Escherichia coli hypothetical transporter YjdL or B4130 SWALL:YJDL_ECOLI (SWALL:P39276) (485 aa) fasta scores: E(): 5e-14, 25.14% id in 521 aa; putative transport-related membrane protein 3063719 3287315 BF9343_2551 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_212255.1 3062061 R 272559 CDS YP_212256.1 60682112 3287316 complement(3063781..3064260) 1 NC_003228.3 Similar to Enterococcus faecalis protein EbsC EF1730 SWALL:EBSC_ENTFA (SWALL:P36922) (164 aa) fasta scores: E(): 5.6e-23, 49.65% id in 143 aa, and to Clostridium perfringens probable transcriptional regulator CPE1357 SWALL:Q8XKN7 (EMBL:AP003190) (161 aa) fasta scores: E(): 4.8e-23, 45.39% id in 152 aa; putative regulatory protein 3064260 3287316 BF9343_2552 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_212256.1 3063781 R 272559 CDS YP_212257.1 60682113 3288654 complement(3064516..3067344) 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri UvrABC system protein A UvrA or DinE or B4058 or SF4146 or S3583 SWALL:UVRA_ECOLI (SWALL:P07671) (940 aa) fasta scores: E(): 2e-171, 52.81% id in 941 aa, and to Bacillus subtilis UvrABC system protein A UvrA or BSU35160 SWALL:UVRA_BACSU (SWALL:O34863) (957 aa) fasta scores: E(): 5.2e-182, 54.97% id in 935 aa; UvrABC SOS-repair system protein excinuclease A 3067344 uvrA1 3288654 uvrA1 Bacteroides fragilis NCTC 9343 UvrABC SOS-repair system protein excinuclease A YP_212257.1 3064516 R 272559 CDS YP_212258.1 60682114 3287309 3067521..3069290 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron LysM-repeat proteins and domains BT0577 SWALL:Q8AA88 (EMBL:AE016928) (588 aa) fasta scores: E(): 4.5e-173, 75% id in 592 aa; conserved exported hypothetical protein 3069290 3287309 BF9343_2554 Bacteroides fragilis NCTC 9343 conserved exported hypothetical protein YP_212258.1 3067521 D 272559 CDS YP_212259.1 60682115 3287291 3069287..3069994 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0576 SWALL:AAO75683 (EMBL:AE016928) (240 aa) fasta scores: E(): 6.8e-58, 64.7% id in 238 aa; putative conserved exported protein 3069994 3287291 BF9343_2555 Bacteroides fragilis NCTC 9343 putative conserved exported protein YP_212259.1 3069287 D 272559 CDS YP_212260.1 60682116 3287294 complement(3070076..3070525) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0575 SWALL:AAO75682 (EMBL:AE016928) (147 aa) fasta scores: E(): 4.5e-38, 69.12% id in 149 aa, and to Chlorobium tepidum hypothetical protein CT0592 SWALL:Q8KEU0 (EMBL:AE012833) (154 aa) fasta scores: E(): 5.6e-07, 31.61% id in 155 aa; hypothetical protein 3070525 3287294 BF9343_2556 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212260.1 3070076 R 272559 CDS YP_212261.1 60682117 3287299 complement(3070635..3070970) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0574 SWALL:AAO75681 (EMBL:AE016928) (111 aa) fasta scores: E(): 1.7e-35, 93.69% id in 111 aa; hypothetical protein 3070970 3287299 BF9343_2557 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212261.1 3070635 R 272559 CDS YP_212262.1 60682118 3287292 complement(3070986..3071789) 1 NC_003228.3 Similar to Chlorobium tepidum hypothetical protein CT0017 SWALL:Q8KGF1 (EMBL:AE012781) (382 aa) fasta scores: E(): 3e-06, 25.47% id in 263 aa, and to Brucella suis competence protein ComL, putative BR1422 SWALL:Q8FZQ1 (EMBL:AE014438) (287 aa) fasta scores: E(): 8.9e-06, 22.53% id in 253 aa; conserved hypothetical lipoprotein 3071789 3287292 BF9343_2558 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_212262.1 3070986 R 272559 CDS YP_212263.1 60682119 3287298 complement(3071977..3072402) 1 NC_003228.3 Similar to Chlorobium tepidum hypothetical protein CT0111 SWALL:Q8KG57 (EMBL:AE012790) (142 aa) fasta scores: E(): 2.1e-21, 49.29% id in 142 aa, and to Methanobacterium thermoautotrophicum hypothetical protein MTH1854 SWALL:O27882 (EMBL:AE000938) (143 aa) fasta scores: E(): 8.7e-17, 39.86% id in 143 aa; hypothetical protein 3072402 3287298 BF9343_2559 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212263.1 3071977 R 272559 CDS YP_212264.1 60682120 3289198 complement(3072430..3073728) 1 NC_003228.3 Similar to Escherichia coli phenylacetate-coenzyme A ligase PaaK or B1398 SWALL:PAAK_ECOLI (SWALL:P76085) (437 aa) fasta scores: E(): 1.3e-82, 50.46% id in 430 aa, and to Chlorobium tepidum phenylacetyl-coenzyme A ligase PaaK or CT0112 SWALL:Q8KG56 (EMBL:AE012790) (439 aa) fasta scores: E(): 9.6e-114, 63.19% id in 432 aa; putative phenylacetate-coenzyme A ligase 3073728 paaK1 3289198 paaK1 Bacteroides fragilis NCTC 9343 putative phenylacetate-coenzyme A ligase YP_212264.1 3072430 R 272559 CDS YP_212265.1 60682121 3287989 3073845..3075878 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 UvrABC system protein B UvrB or B0779 or Z0998 or ECS0857 SWALL:UVRB_ECOLI (SWALL:P07025) (672 aa) fasta scores: E(): 3.8e-135, 56.39% id in 672 aa, and to Bacillus subtilis UvrABC system protein B UvrB or DinA or Uvr or BSU35170 SWALL:UVRB_BACSU (SWALL:P37954) (661 aa) fasta scores: E(): 4.3e-134, 56.97% id in 667 aa; UvrABC SOS-repair system protein B 3075878 uvrB 3287989 uvrB Bacteroides fragilis NCTC 9343 UvrABC SOS-repair system protein B YP_212265.1 3073845 D 272559 CDS YP_212266.1 60682122 3287280 3076163..3076801 1 NC_003228.3 Similar to Shigella flexneri ORF, conserved hypothetical protein YgjQ or SF3126 SWALL:AAN44598 (EMBL:AE015324) (230 aa) fasta scores: E(): 4e-30, 47.76% id in 201 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri SanA protein or B2144 or C2677 or Z3399 or ECS3036 or SF2229 or S2358 SWALL:SANA_ECOLI (SWALL:P33017) (239 aa) fasta scores: E(): 2.2e-27, 40.56% id in 212 aa; putative transport-related membrane protein 3076801 3287280 BF9343_2562 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_212266.1 3076163 D 272559 CDS YP_212267.1 60682123 3287297 3076845..3077621 1 NC_003228.3 Very low similarity to Bradyrhizobium japonicum BLL7353 protein SWALL:BAC52618 (EMBL:AP005961) (299 aa) fasta scores: E(): 3.1e-06, 28.93% id in 197 aa; hypothetical protein 3077621 3287297 BF9343_2563 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212267.1 3076845 D 272559 CDS YP_212268.1 60682124 3287302 3078374..3078802 1 NC_003228.3 Similar to Thermotoga maritima heat shock protein, class I TM0374 SWALL:Q9WYK7 (EMBL:AE001717) (147 aa) fasta scores: E(): 9.3e-11, 37.85% id in 140 aa, and to Methanosarcina mazei small heat shock protein MM1419 SWALL:Q8PX03 (EMBL:AE013376) (153 aa) fasta scores: E(): 1.9e-09, 35.25% id in 139 aa, and to Clostridium tetani heat shock protein, molecular chaperone CTC02469 SWALL:AAO36934 (EMBL:AE015944) (146 aa) fasta scores: E(): 4e-08, 33.55% id in 149 aa. Note: The majority of the rest of the database matches are to eukaryotic entries; putative heat-shock related protein 3078802 3287302 BF9343_2565 Bacteroides fragilis NCTC 9343 putative heat-shock related protein YP_212268.1 3078374 D 272559 CDS YP_212269.1 60682125 3287286 complement(3078898..3081966) 1 NC_003228.3 Similar in its C-terminal region to Coxiella burnetii sensory box sensor histidine kinase/response regulator CBU0634 SWALL:Q83DR2 (EMBL:AE016961) (551 aa) fasta scores: E(): 1.3e-31, 30.53% id in 465 aa, and in its N-terminal region to Methanosarcina acetivorans sensory transduction histidine kinase MA3368 SWALL:Q8TKN3 (EMBL:AE011042) (1447 aa) fasta scores: E(): 1.3e-28, 23.64% id in 905 aa; putative two-component system sensor kinase/response regulator fusion protein 3081966 3287286 BF9343_2566 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_212269.1 3078898 R 272559 CDS YP_212270.1 60682126 3287287 complement(3082100..3083218) 1 NC_003228.3 Similar to Ralstonia solanacearum probable transmembrane protein RSC0165 or RS01035 SWALL:Q8Y316 (EMBL:AL646057) (381 aa) fasta scores: E(): 7.2e-28, 27.71% id in 368 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YbhR or B0792 or Z1012 or ECS0870 or SF0742 or S0783 SWALL:YBHR_ECOLI (SWALL:P75774) (368 aa) fasta scores: E(): 1.1e-26, 28.06% id in 367 aa; putative ABC transport system, membrane protein 3083218 3287287 BF9343_2567 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212270.1 3082100 R 272559 CDS YP_212271.1 60682127 3287260 complement(3083215..3084315) 1 NC_003228.3 Similar to Vibrio parahaemolyticus putative transmembrane protein VPA0488 SWALL:BAC61831 (EMBL:AP005085) (366 aa) fasta scores: E(): 2.5e-37, 32.96% id in 361 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YbhS or B0793 or C0876 or Z1013 or ECS0871 SWALL:YBHS_ECOLI (SWALL:P75775) (377 aa) fasta scores: E(): 6e-30, 30.7% id in 368 aa; putative ABC transport system, membrane protein 3084315 3287260 BF9343_2568 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212271.1 3083215 R 272559 CDS YP_212272.1 60682128 3287284 complement(3084319..3085779) 1 NC_003228.3 Similar to Rhizobium meliloti putative ABC transporter ATP-binding protein, consisting of 2 fused ATP-binding domains RB0872 or SMB21206 SWALL:Q92V45 (EMBL:AL603645) (582 aa) fasta scores: E(): 2.1e-36, 39.39% id in 561 aa, and to Escherichia coli, and Shigella flexneri hypothetical ABC transporter ATP-binding protein YbhF or B0794 or SF0744 or S0785 SWALL:YBHF_ECOLI (SWALL:P75776) (578 aa) fasta scores: E(): 6e-36, 38.79% id in 562 aa; putative BAC transport system, two-fused ATP-binding domains protein 3085779 3287284 BF9343_2569 Bacteroides fragilis NCTC 9343 putative BAC transport system, two-fused ATP-binding domains protein YP_212272.1 3084319 R 272559 CDS YP_212273.1 60682129 3287289 complement(3085793..3086689) 1 NC_003228.3 Similar to Thiobacillus ferrooxidans hypothetical UPF0194 membrane protein in asrC 5'region SWALL:YBHG_THIFE (SWALL:Q9L9D4) (338 aa) fasta scores: E(): 8.5e-09, 27.14% id in 291 aa, and to Escherichia coli hypothetical UPF0194 membrane protein YbhG or B0795 SWALL:YBHG_ECOLI (SWALL:P75777) (332 aa) fasta scores: E(): 1.1e-07, 26.05% id in 284 aa; putative ABC transport system, lipoprotein 3086689 3287289 BF9343_2570 Bacteroides fragilis NCTC 9343 putative ABC transport system, lipoprotein YP_212273.1 3085793 R 272559 CDS YP_212274.1 60682130 3287290 complement(3086728..3087984) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane efflux protein BT0560 SWALL:AAO75667 (EMBL:AE016928) (409 aa) fasta scores: E(): 1.1e-106, 69.95% id in 406 aa, and to Chlorobium tepidum outer membrane protein, putative CT0107 SWALL:Q8KG61 (EMBL:AE012789) (428 aa) fasta scores: E(): 9.3e-07, 21.28% id in 437 aa; hypothetical protein 3087984 3287290 BF9343_2571 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212274.1 3086728 R 272559 CDS YP_212275.1 60682131 3287262 complement(3088196..3089356) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2848 SWALL:AAO77954 (EMBL:AE016937) (402 aa) fasta scores: E(): 5.2e-24, 30.37% id in 405 aa; conserved hypothetical lipoprotein 3089356 3287262 BF9343_2572 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_212275.1 3088196 R 272559 CDS YP_212276.1 60682132 3287265 3089688..3090575 1 NC_003228.3 Similar to Pseudomonas indica PobR SWALL:Q9F5V9 (EMBL:AF302797) (285 aa) fasta scores: E(): 2.4e-10, 23.44% id in 273 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein BLL3668 SWALL:BAC48933 (EMBL:AP005948) (311 aa) fasta scores: E(): 1.9e-08, 23.1% id in 238 aa; putative AraC-family transcriptional regulator 3090575 3287265 BF9343_2573 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_212276.1 3089688 D 272559 CDS YP_212277.1 60682133 3287274 complement(3091136..3091432) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative thioredoxin BT0549 SWALL:AAO75656 (EMBL:AE016928) (98 aa) fasta scores: E(): 5.5e-25, 67.34% id in 98 aa, and to Halobacterium sp. thioredoxin SWALL:O46709 (EMBL:AF016485) (119 aa) fasta scores: E(): 5.4e-07, 32.65% id in 98 aa. Note: The rest of the database matches belong to eukaryotic entries; putative thioredoxin 3091432 3287274 BF9343_2574 Bacteroides fragilis NCTC 9343 putative thioredoxin YP_212277.1 3091136 R 272559 CDS YP_212278.1 60682134 3289253 complement(3091632..3094862) 1 NC_003228.3 Similar to Escherichia coli carbamoyl-phosphate synthase large chain CarB or PyrA or B0033 SWALL:CARB_ECOLI (SWALL:P00968) (1072 aa) fasta scores: E(): 7.9e-140, 40.93% id in 1075 aa, and to Synechocystis sp. carbamoyl-phosphate synthase large chain CarB or SLL0370 SWALL:CARB_SYNY3 (SWALL:Q55756) (1081 aa) fasta scores: E(): 1.7e-159, 41.61% id in 1091 aa. Note: Possible CDS duplication as also highly similar to BF3808 (1079 aa) fasta scores: E(): 0, 66.202% identity in 1077 aa overlap; putative carbamoyl-phosphate synthase large chain 1 3094862 carB1 3289253 carB1 Bacteroides fragilis NCTC 9343 putative carbamoyl-phosphate synthase large chain 1 YP_212278.1 3091632 R 272559 CDS YP_212279.1 60682135 3289221 complement(3095025..3096101) 1 NC_003228.3 Similar to Bacillus subtilis carbamoyl-phosphate synthase, pyrimidine-specific, small chain CarA or PyrAA or BSU15510 SWALL:CARA_BACSU (SWALL:P25993) (364 aa) fasta scores: E(): 2.1e-39, 41.04% id in 363 aa, and to Pyrococcus furiosus carbamoyl-phosphate synthase small chain CarA or PF1713 SWALL:CARA_PYRFU (SWALL:Q8U086) (371 aa) fasta scores: E(): 1.6e-59, 46.4% id in 362 aa; putative carbamoyl-phosphate synthase small chain 3096101 carA 3289221 carA Bacteroides fragilis NCTC 9343 putative carbamoyl-phosphate synthase small chain YP_212279.1 3095025 R 272559 CDS YP_212280.1 60682136 3288923 complement(3096136..3098019) 1 NC_003228.3 Similar to Vibrio vulnificus glutamine phosphoribosylpyrophosphate amidotransferase VV11997 SWALL:Q8DB29 (EMBL:AE016803) (504 aa) fasta scores: E(): 1.2e-05, 27.4% id in 562 aa, and to Escherichia coli, and Shigella flexneri amidophosphoribosyltransferase PurF or B2312 or SF2388 or S2523 SWALL:PUR1_ECOLI (SWALL:P00496) (504 aa) fasta scores: E(): 0.00013, 26.2% id in 538 aa; putative phosphoribosylpyrophosphate amidotransferase 3098019 3288923 BF9343_2577 Bacteroides fragilis NCTC 9343 putative phosphoribosylpyrophosphate amidotransferase YP_212280.1 3096136 R 272559 CDS YP_212281.1 60682137 3288975 3099144..3100820 1 NC_003228.3 Similar to Escherichia coli asparagine synthetase B [glutamine-hydrolyzing] AsnB or B0674 SWALL:ASNB_ECOLI (SWALL:P22106) (553 aa) fasta scores: E(): 5.7e-147, 64.09% id in 557 aa, and to Vibrio cholerae asparagine synthetase B, glutamine-hydrolyzing VC0991 SWALL:Q9KTB2 (EMBL:AE004180) (554 aa) fasta scores: E(): 1.2e-151, 67.92% id in 558 aa; asparagine synthetase B [glutamine-hydrolyzing] 3100820 asnB 3288975 asnB Bacteroides fragilis NCTC 9343 asparagine synthetase B [glutamine-hydrolyzing] YP_212281.1 3099144 D 272559 CDS YP_212282.1 60682138 3287272 3101072..3101833 1 NC_003228.3 Similar to the C-terminal region of Staphylococcus aureus hypothetical protein SAV0228 or SA0220 SWALL:Q99WZ5 (EMBL:AP003358) (587 aa) fasta scores: E(): 2.7e-08, 24.32% id in 259 aa, and to Lactobacillus plantarum glycerophosphodiester phosphodiesterase GlpQ4 or LP_2582 SWALL:CAD64855 (EMBL:AL935259) (597 aa) fasta scores: E(): 2.5e-06, 26.25% id in 259 aa; hypothetical protein 3101833 3287272 BF9343_2580 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212282.1 3101072 D 272559 CDS YP_212283.1 60682139 3287248 3102054..3103367 1 NC_003228.3 hypothetical protein 3103367 3287248 BF9343_2581 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212283.1 3102054 D 272559 CDS YP_212284.1 60682140 3287250 3103576..3104451 1 NC_003228.3 Similar to parts of Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2268 SWALL:AAO77375 (EMBL:AE016935) (1026 aa) fasta scores: E(): 3.3e-09, 45.55% id in 90 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0646 SWALL:AAO75753 (EMBL:AE016928) (190 aa) fasta scores: E(): 5.4e-09, 37.56% id in 181 aa; hypothetical protein 3104451 3287250 BF9343_2582 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212284.1 3103576 D 272559 CDS YP_212285.1 60682141 3285407 3104886..3105704 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 diaminopimelate epimerase DapF or B3809 or Z5326 or ECS4739 SWALL:DAPF_ECOLI (SWALL:P08885) (274 aa) fasta scores: E(): 3.6e-17, 38.71% id in 279 aa, and to Aquifex aeolicus diaminopimelate epimerase DapF or AQ_1838 SWALL:DAPF_AQUAE (SWALL:O67693) (279 aa) fasta scores: E(): 3.6e-25, 36.36% id in 275 aa; diaminopimelate epimerase 3105704 dapF 3285407 dapF Bacteroides fragilis NCTC 9343 diaminopimelate epimerase YP_212285.1 3104886 D 272559 CDS YP_212286.1 60682142 3287257 3105757..3106989 1 NC_003228.3 Similar to Methanobacterium thermoautotrophicum aspartate aminotransferase related protein MTH52 SWALL:O26158 (EMBL:AE000797) (410 aa) fasta scores: E(): 1.8e-106, 62.31% id in 406 aa, and to Rhizobium meliloti putative aminotransferase AatC or R01723 or SMC00294 SWALL:AATC_RHIME (SWALL:O87320) (405 aa) fasta scores: E(): 1e-10, 28.29% id in 410 aa; putative aminotransferase-related protein 3106989 3287257 BF9343_2584 Bacteroides fragilis NCTC 9343 putative aminotransferase-related protein YP_212286.1 3105757 D 272559 CDS YP_212287.1 60682143 3287277 complement(3107122..3107688) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0542 SWALL:AAO75649 (EMBL:AE016928) (192 aa) fasta scores: E(): 2.3e-53, 76.56% id in 192 aa; hypothetical protein 3107688 3287277 BF9343_2585 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212287.1 3107122 R 272559 CDS YP_212288.1 60682144 3287252 3107859..3109925 1 NC_003228.3 Similar to Vibrio parahaemolyticus polyphosphate kinase Ppk or VP0573 SWALL:BAC58836 (EMBL:AP005074) (696 aa) fasta scores: E(): 2.2e-103, 40.69% id in 688 aa, and to Escherichia coli, and Escherichia coli O157:H7 polyphosphate kinase Ppk or B2501 or Z3764 or ECS3363 SWALL:PPK_ECOLI (SWALL:P28688) (687 aa) fasta scores: E(): 1e-94, 38.82% id in 698 aa; putative polyphosphate kinase 3109925 3287252 BF9343_2586 Bacteroides fragilis NCTC 9343 putative polyphosphate kinase YP_212288.1 3107859 D 272559 CDS YP_212289.1 60682145 3287253 3109922..3110836 1 NC_003228.3 Similar to Corynebacterium glutamicum exopolyphosphatase CGL0977 SWALL:Q8NRR8 (EMBL:AP005277) (321 aa) fasta scores: E(): 6.4e-10, 28.79% id in 316 aa, and to Bifidobacterium longum possible exopolyphosphatase-like protein BL1019 SWALL:Q8G5J2 (EMBL:AE014725) (333 aa) fasta scores: E(): 1.3e-09, 27.07% id in 325 aa; putative phosphatase 3110836 3287253 BF9343_2587 Bacteroides fragilis NCTC 9343 putative phosphatase YP_212289.1 3109922 D 272559 CDS YP_212290.1 60682146 3287238 complement(3111029..3112174) 1 NC_003228.3 Similar to Escherichia coli hypothetical oxidoreductase YqhD or B3011 SWALL:YQHD_ECOLI (SWALL:Q46856) (387 aa) fasta scores: E(): 3e-67, 50.51% id in 386 aa, and to Bacillus subtilis probable NADH-dependent butanol dehydrogenase 1 YugJ or BSU31370 SWALL:ADHA_BACSU (SWALL:O05239) (387 aa) fasta scores: E(): 5.5e-52, 43.55% id in 388 aa; putative alcohol dehydrogenase 3112174 3287238 BF9343_2588 Bacteroides fragilis NCTC 9343 putative alcohol dehydrogenase YP_212290.1 3111029 R 272559 CDS YP_212291.1 60682147 3285132 3113395..3114567 1 NC_003228.3 Similar to Bacillus subtilis tryptophan synthase beta chain TrpB or BSU22640 SWALL:TRPB_BACSU (SWALL:P07600) (400 aa) fasta scores: E(): 8.4e-74, 54.68% id in 384 aa, and to Thermotoga maritima tryptophan synthase beta chain 1 TrpB1 or TrpB or TM0138 SWALL:TRB1_THEMA (SWALL:P50909) (389 aa) fasta scores: E(): 3.5e-86, 61.57% id in 380 aa; tryptophan synthase beta chain 3114567 trpB 3285132 trpB Bacteroides fragilis NCTC 9343 tryptophan synthase beta chain YP_212291.1 3113395 D 272559 CDS YP_212292.1 60682148 3285198 3114701..3116107 1 NC_003228.3 Similar to Bacillus subtilis anthranilate synthase component I TrpE or BSU22680 SWALL:TRPE_BACSU (SWALL:P03963) (515 aa) fasta scores: E(): 5.4e-43, 34.87% id in 476 aa, and to Thermus thermophilus anthranilate synthase component I TrpE SWALL:TRPE_THETH (SWALL:P05378) (462 aa) fasta scores: E(): 2.1e-52, 37.44% id in 462 aa; anthranilate synthase component I 3116107 trpE 3285198 trpE Bacteroides fragilis NCTC 9343 anthranilate synthase component I YP_212292.1 3114701 D 272559 CDS YP_212293.1 60682149 3285191 3116241..3116846 1 NC_003228.3 Similar to Pseudomonas aeruginosa anthranilate synthase component ii trpg or pa0649 SWALL:TRPG_PSEAE (SWALL:P20576) (201 aa) fasta scores: E(): 4.2e-29, 45.31% id in 192 aa and to Escherichia coli para-aminobenzoate synthase glutamine amidotransferase component II PabA or B3360 SWALL:PABA_ECOLI (SWALL:P00903) (187 aa) fasta scores: E(): 5.9e-30, 47.59% id in 187 aa, and to Burkholderia multivorans anthranilate synthase component II TrpG SWALL:Q845Y0 (EMBL:AB091305) (195 aa) fasta scores: E(): 8e-31, 47.87% id in 188 aa; glutamine amidotransferase 3116846 trpG 3285191 trpG Bacteroides fragilis NCTC 9343 glutamine amidotransferase YP_212293.1 3116241 D 272559 CDS YP_212294.1 60682150 3285207 3116893..3117888 1 NC_003228.3 Similar to the C-terminal region of Escherichia coli anthranilate synthase component II TrpD or TrpGD or B1263 where the anthranilate phosphoribosyltransferase (TrpD) activity is placed SWALL:TRPG_ECOLI (SWALL:P00904) (530 aa) fasta scores: E(): 5.5e-30, 33.93% id in 330 aa, and to Methanococcus jannaschii anthranilate phosphoribosyltransferase TrpD or MJ0234 SWALL:TRPD_METJA (SWALL:Q57686) (336 aa) fasta scores: E(): 3.2e-38, 35.13% id in 333 aa; anthranilate phosphoribosyltransferase 3117888 trpD 3285207 trpD Bacteroides fragilis NCTC 9343 anthranilate phosphoribosyltransferase YP_212294.1 3116893 D 272559 CDS YP_212295.1 60682151 3285221 3117914..3118726 1 NC_003228.3 Similar to Pseudomonas putida indole-3-glycerol phosphate synthase TrpC SWALL:TRPC_PSEPU (SWALL:P20578) (277 aa) fasta scores: E(): 2.7e-28, 37.45% id in 259 aa, and to Xylella fastidiosa indole-3-glycerol phosphate synthase TrpC or XF0213 SWALL:TRPC_XYLFA (SWALL:Q9PGT5) (264 aa) fasta scores: E(): 1e-32, 42.08% id in 259 aa; indole-3-glycerol phosphate synthase 3118726 trpC 3285221 trpC Bacteroides fragilis NCTC 9343 indole-3-glycerol phosphate synthase YP_212295.1 3117914 D 272559 CDS YP_212296.1 60682152 3285108 3118817..3119437 1 NC_003228.3 Similar to Bacillus subtilis N-(5'-phosphoribosyl)anthranilate isomerase TrpF or BSU22650 SWALL:TRPF_BACSU (SWALL:P20167) (215 aa) fasta scores: E(): 2.5e-13, 32.54% id in 212 aa, and to Thermotoga maritima N-(5'-phosphoribosyl)anthranilate isomerase TrpF or TM0139 SWALL:TRPF_THEMA (SWALL:Q56320) (205 aa) fasta scores: E(): 5.9e-18, 32.68% id in 205 aa; N-(5'-phosphoribosyl)anthranilate isomerase 3119437 trpF 3285108 trpF Bacteroides fragilis NCTC 9343 N-(5'-phosphoribosyl)anthranilate isomerase YP_212296.1 3118817 D 272559 CDS YP_212297.1 60682153 3285130 3119497..3120288 1 NC_003228.3 Similar to Methanococcus voltae tryptophan synthase alpha chain TrpA SWALL:TRPA_METVO (SWALL:P14637) (284 aa) fasta scores: E(): 3.2e-26, 35.39% id in 243 aa, and to Clostridium acetobutylicum tryptophan synthase alpha chain TrpA or CAC3157 SWALL:TRPA_CLOAB (SWALL:Q97EF6) (263 aa) fasta scores: E(): 1.1e-28, 34.13% id in 249 aa; tryptophan synthase alpha chain 3120288 trpA 3285130 trpA Bacteroides fragilis NCTC 9343 tryptophan synthase alpha chain YP_212297.1 3119497 D 272559 CDS YP_212298.1 60682154 3289104 3120537..3121583 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 L-asparaginase I AnsA or B1767 or Z2801 or ECS2474 SWALL:ASG1_ECOLI (SWALL:P18840) (338 aa) fasta scores: E(): 1.6e-54, 47.05% id in 340 aa, and to Vibrio parahaemolyticus L-asparaginase I VP2153 SWALL:BAC60416 (EMBL:AP005080) (337 aa) fasta scores: E(): 2.7e-56, 47.19% id in 339 aa. Note: Also similar to BF0556 (373 aa) fasta scores: E(): 9.9e-96, 68.605% identity in 344 aa overlap; putative L-asparaginase I 3121583 ansA 3289104 ansA Bacteroides fragilis NCTC 9343 putative L-asparaginase I YP_212298.1 3120537 D 272559 CDS YP_212299.1 60682155 3288934 3121799..3124225 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane protein, function unknown BT0525 SWALL:AAO75632 (EMBL:AE016928) (820 aa) fasta scores: E(): 3.2e-79, 41.88% id in 850 aa, and to parts of Vibrio parahaemolyticus hypothetical protein VPA1172 SWALL:BAC62515 (EMBL:AP005088) (703 aa) fasta scores: E(): 4.4e-11, 23.89% id in 498 aa; hypothetical protein 3124225 3288934 BF9343_2597 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212299.1 3121799 D 272559 CDS YP_212300.1 60682156 3287242 3124428..3124793 1 NC_003228.3 Similar to the N-terminal region of Escherichia coli, and Escherichia coli O157:H7 phosphate regulon transcriptional regulatory protein PhoB or B0399 or Z0497 or ECS0449 where the response regulator activity resides SWALL:PHOB_ECOLI (SWALL:P08402) (229 aa) fasta scores: E(): 2.7e-08, 35.53% id in 121 aa, and to Bacteroides thetaiotaomicron putative two-component system response regulator BT0524 SWALL:AAO75631 (EMBL:AE016928) (121 aa) fasta scores: E(): 2.9e-34, 76.86% id in 121 aa; putative response regulator 3124793 3287242 BF9343_2598 Bacteroides fragilis NCTC 9343 putative response regulator YP_212300.1 3124428 D 272559 CDS YP_212301.1 60682157 3287259 3124794..3125954 1 NC_003228.3 Similar to parts of Rhizobium meliloti exopolysaccharide production protein ExoY or RB1069 or SMB20946 SWALL:EXOY_RHIME (SWALL:Q02731) (226 aa) fasta scores: E(): 1.9e-12, 32.77% id in 238 aa, and to Anabaena sp. hypothetical protein ALL4160 SWALL:Q8YPN3 (EMBL:AP003595) (351 aa) fasta scores: E(): 7.6e-12, 28.7% id in 331 aa, and to Salmonella typhimurium undecaprenyl-phosphate galactosephosphotransferase RfbP or STM2082 SWALL:RFBP_SALTY (SWALL:P26406) (476 aa) fasta scores: E(): 1.8e-11, 32.4% id in 287 aa; putative sugar transferase-related membrane protein 3125954 3287259 BF9343_2599 Bacteroides fragilis NCTC 9343 putative sugar transferase-related membrane protein YP_212301.1 3124794 D 272559 CDS YP_212302.1 60682158 3287239 3125972..3126865 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0522 SWALL:AAO75629 (EMBL:AE016928) (304 aa) fasta scores: E(): 1.8e-42, 41.66% id in 300 aa; hypothetical protein 3126865 3287239 BF9343_2600 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212302.1 3125972 D 272559 CDS YP_212303.1 60682159 3287241 3126881..3127510 1 NC_003228.3 Similar to Anabaena sp. hypothetical protein ALR1276 SWALL:Q8YXD7 (EMBL:AP003585) (275 aa) fasta scores: E(): 1.5e-12, 34.37% id in 192 aa, and to Leptospira interrogans galactoside O-acetyltransferase LacA or LA1622 SWALL:Q8F5P5 (EMBL:AE011340) (198 aa) fasta scores: E(): 2.1e-12, 31.63% id in 177 aa; putative acetyltransferase 3127510 3287241 BF9343_2601 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_212303.1 3126881 D 272559 CDS YP_212304.1 60682160 3287246 complement(3128110..3128718) 1 NC_003228.3 Similar to Oceanobacillus iheyensis two-component response regulator OB1162 SWALL:Q8ERY4 (EMBL:AP004597) (209 aa) fasta scores: E(): 2.5e-06, 25.12% id in 199 aa, and to Brucella suis DNA-binding response regulator, LuxR family BR0342 SWALL:Q8G2I0 (EMBL:AE014345) (213 aa) fasta scores: E(): 1.7e-05, 29.66% id in 209 aa; putative DNA-binding response regulator 3128718 3287246 BF9343_2602 Bacteroides fragilis NCTC 9343 putative DNA-binding response regulator YP_212304.1 3128110 R 272559 CDS YP_212305.1 60682161 3287227 complement(3128708..3129415) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0519 SWALL:AAO75626 (EMBL:AE016928) (234 aa) fasta scores: E(): 4.1e-86, 89.31% id in 234 aa; hypothetical protein 3129415 3287227 BF9343_2603 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212305.1 3128708 R 272559 CDS YP_212306.1 60682162 3287234 3129622..3130797 1 NC_003228.3 Similar to Clostridium acetobutylicum aicar transformylase domain of PurH-like protein CAC2445 SWALL:Q97GC3 (EMBL:AE007744) (391 aa) fasta scores: E(): 3.7e-101, 64.43% id in 388 aa, and to the C-terminal region of Escherichia coli bifunctional purine biosynthesis protein [includes: phosphoribosylaminoimidazolecarboxamide formyltransferase; imp cyclohydrolase] PurH or B4006 SWALL:PUR9_ECOLI (SWALL:P15639) (529 aa) fasta scores: E(): 2.4e-06, 28.28% id in 396 aa; putative IMP cyclohydrolase 3130797 3287234 BF9343_2604 Bacteroides fragilis NCTC 9343 putative IMP cyclohydrolase YP_212306.1 3129622 D 272559 CDS YP_212307.1 60682163 3285100 3130920..3131429 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 flavodoxin 1 FldA or B0684 or C0771 or Z0832 or ECS0715 SWALL:FLAV_ECOLI (SWALL:P23243) (175 aa) fasta scores: E(): 2.9e-20, 38.03% id in 163 aa, and to Campylobacter jejuni flavodoxin FldA or CJ1382c SWALL:Q9PMR8 (EMBL:AL139078) (163 aa) fasta scores: E(): 4.3e-24, 47.2% id in 161 aa; flavodoxin 1 3131429 fldA 3285100 fldA Bacteroides fragilis NCTC 9343 flavodoxin 1 YP_212307.1 3130920 D 272559 CDS YP_212308.1 60682164 3287244 3131452..3131814 1 NC_003228.3 Similar to Methanosarcina acetivorans predicted protein MA2700 SWALL:Q8TMF8 (EMBL:AE010967) (135 aa) fasta scores: E(): 8.2e-16, 40.17% id in 117 aa, and to Chlorobium tepidum hypothetical protein CT1735 SWALL:Q8KBQ0 (EMBL:AE012928) (118 aa) fasta scores: E(): 4.2e-15, 41.81% id in 110 aa; hypothetical protein 3131814 3287244 BF9343_2606 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212308.1 3131452 D 272559 CDS YP_212309.1 60682165 3287230 3132324..3132539 1 NC_003228.3 hypothetical membrane protein 3132539 3287230 BF9343_2607 Bacteroides fragilis NCTC 9343 hypothetical membrane protein YP_212309.1 3132324 D 272559 CDS YP_212310.1 60682166 3287232 3132551..3133585 1 NC_003228.3 Similar in its N-terminal region to Acidianus ambivalens Aa3-type cytochrome, terminal oxidase DoxD SWALL:Q8NKT7 (EMBL:AJ345004) (174 aa) fasta scores: E(): 3.2e-18, 41.83% id in 153 aa, and to Sulfolobus solfataricus terminal quinol oxidase, subunit, putative DoxD-like or SSO1881 SWALL:Q97X72 (EMBL:AE006796) (173 aa) fasta scores: E(): 4.5e-16, 38.51% id in 148 aa; hypothetical protein 3133585 3287232 BF9343_2608 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212310.1 3132551 D 272559 CDS YP_212311.1 60682167 3287237 3133607..3134092 1 NC_003228.3 Similar to Borrelia burgdorferi thioredoxin TrxA or BB0061 SWALL:THIO_BORBU (SWALL:O51088) (117 aa) fasta scores: E(): 3.4e-19, 50% id in 110 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 TrxA or TsnC or FipA SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 2.2e-11, 48.31% id in 89 aa; putative exported thioredoxin 3134092 3287237 BF9343_2609 Bacteroides fragilis NCTC 9343 putative exported thioredoxin YP_212311.1 3133607 D 272559 CDS YP_212312.1 60682168 3287181 complement(3134145..3135254) 1 NC_003228.3 Similar to Paracoccus denitrificans methylamine utilization protein MauG precursor SWALL:MAUG_PARDE (SWALL:Q51658) (387 aa) fasta scores: E(): 2.4e-32, 37.64% id in 348 aa, and to Escherichia coli probable cytochrome C peroxidase YhjA or B3518 SWALL:YHJA_ECOLI (SWALL:P37197) (465 aa) fasta scores: E(): 3.8e-08, 29.56% id in 345 aa; putative exported methylamine utilization protein 3135254 3287181 BF9343_2610 Bacteroides fragilis NCTC 9343 putative exported methylamine utilization protein YP_212312.1 3134145 R 272559 CDS YP_212313.1 60682169 3287220 complement(3135413..3136390) 1 NC_003228.3 Similar to Chlamydia pneumoniae hypothetical protein YxjG_2 or CPN0448 or CP0305 SWALL:Q9Z897 (EMBL:AE001628) (371 aa) fasta scores: E(): 1.2e-19, 29.21% id in 356 aa, and to Listeria innocua hypothetical protein LIN0838 SWALL:Q92DH5 (EMBL:AL596166) (367 aa) fasta scores: E(): 4.1e-13, 29.81% id in 369 aa; hypothetical protein 3136390 3287220 BF9343_2611 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212313.1 3135413 R 272559 CDS YP_212314.1 60682170 3287236 complement(3136808..3139111) 1 NC_003228.3 Similar to Porphyromonas gingivalis hypothetical TonB-linked outer membrane receptor PG50 SWALL:Q9KIB4 (EMBL:AF237554) (848 aa) fasta scores: E(): 2.7e-87, 51.11% id in 851 aa, and to Escherichia coli vitamin B12 receptor precursor BTuB or Bfe or Cer or DcrC or B3966 SWALL:BTUB_ECOLI (SWALL:P06129) (614 aa) fasta scores: E(): 1.5e-07, 25.05% id in 483 aa; putative exported TonB-dependent receptor protein 3139111 3287236 BF9343_2612 Bacteroides fragilis NCTC 9343 putative exported TonB-dependent receptor protein YP_212314.1 3136808 R 272559 CDS YP_212315.1 60682171 3287214 complement(3139182..3139526) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0503 SWALL:AAO75610 (EMBL:AE016928) (113 aa) fasta scores: E(): 1.4e-26, 64.86% id in 111 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0501 SWALL:AAO75608 (EMBL:AE016928) (110 aa) fasta scores: E(): 2.3e-20, 58.87% id in 107 aa; hypothetical protein 3139526 3287214 BF9343_2613 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212315.1 3139182 R 272559 CDS YP_212316.1 60682172 3287218 complement(3139756..3140943) 1 NC_003228.3 Similar to Bacillus halodurans hypothetical protein BH3693 SWALL:Q9K6N5 (EMBL:AP001519) (405 aa) fasta scores: E(): 2e-17, 25.18% id in 397 aa, and to Xylella fastidiosa transport protein YxaH or PD1520 SWALL:AAO29363 (EMBL:AE012558) (416 aa) fasta scores: E(): 6.9e-17, 25.24% id in 408 aa; hypothetical protein 3140943 3287218 BF9343_2614 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212316.1 3139756 R 272559 CDS YP_212317.1 60682173 3287225 complement(3141094..3142590) 1 NC_003228.3 Similar to Bacillus subtilis hypothetical transport protein YhcA or BSU09010 SWALL:YHCA_BACSU (SWALL:P54585) (532 aa) fasta scores: E(): 2.1e-50, 28.97% id in 497 aa, and to Shewanella oneidensis drug resistance transporter, emrB/qacA family protein SO0525 SWALL:Q8EJE2 (EMBL:AE015500) (539 aa) fasta scores: E(): 2.3e-49, 30.42% id in 493 aa; hypothetical protein 3142590 3287225 BF9343_2615 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212317.1 3141094 R 272559 CDS YP_212318.1 60682174 3287169 complement(3142620..3143300) 1 NC_003228.3 Similar to Staphylococcus epidermidis conserved hypothetical protein SE1933 SWALL:Q8CRB1 (EMBL:AE016750) (215 aa) fasta scores: E(): 4.7e-15, 32.12% id in 221 aa, and to Bacillus subtilis YhbJ protein SWALL:O31593 (EMBL:Z99108) (221 aa) fasta scores: E(): 2e-14, 30.08% id in 226 aa; hypothetical protein 3143300 3287169 BF9343_2616 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212318.1 3142620 R 272559 CDS YP_212319.1 60682175 3287209 complement(3143470..3145068) 1 NC_003228.3 Similar to Corynebacterium glutamicum predicted permease CGL2211 SWALL:Q8NNI8 (EMBL:AP005281) (539 aa) fasta scores: E(): 5.7e-49, 32.96% id in 540 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical membrane protein YidE or B3685 or Z5181 or ECS4625 or SF3778 or S3992 SWALL:YIDE_ECOLI (SWALL:P29211) (553 aa) fasta scores: E(): 2.9e-21, 32.4% id in 540 aa; hypothetical protein 3145068 3287209 BF9343_2617 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212319.1 3143470 R 272559 CDS YP_212320.1 60682176 3287224 complement(3145745..3146653) 1 NC_003228.3 Similar to Leptospira interrogans Cobalt-Zinc-Cadmium resistance protein CzcD CzcD2 or LA4013 SWALL:Q8EZ48 (EMBL:AE011557) (308 aa) fasta scores: E(): 1.1e-47, 46.53% id in 303 aa, and to Escherichia coli Zinc transporter ZitB or B0752 SWALL:ZITB_ECOLI (SWALL:P75757) (313 aa) fasta scores: E(): 9.7e-36, 36.84% id in 304 aa; putative metal transport-related membrane protein 3146653 3287224 BF9343_2618 Bacteroides fragilis NCTC 9343 putative metal transport-related membrane protein YP_212320.1 3145745 R 272559 CDS YP_212321.1 60682177 3287207 complement(3146701..3147090) 1 NC_003228.3 hypothetical protein 3147090 3287207 BF9343_2619 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212321.1 3146701 R 272559 CDS YP_212322.1 60682178 3287184 complement(3147373..3147513) 1 NC_003228.3 hypothetical protein 3147513 3287184 BF9343_2620 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212322.1 3147373 R 272559 CDS YP_212323.1 60682179 3287212 3147651..3148502 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0498 SWALL:AAO75605 (EMBL:AE016928) (294 aa) fasta scores: E(): 7.6e-41, 46.59% id in 279 aa; putative lipoprotein 3148502 3287212 BF9343_2621 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212323.1 3147651 D 272559 CDS YP_212324.1 60682180 3287197 3148509..3149180 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0497 SWALL:AAO75604 (EMBL:AE016928) (220 aa) fasta scores: E(): 6.7e-33, 47.66% id in 214 aa; putative lipoprotein 3149180 3287197 BF9343_2622 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212324.1 3148509 D 272559 CDS YP_212325.1 60682181 3287198 3149210..3151354 1 NC_003228.3 Similar to Porphyromonas gingivalis hypothetical TonB-linked outer membrane receptor PG13 SWALL:Q9KIB0 (EMBL:AF237558) (757 aa) fasta scores: E(): 2.8e-23, 28.22% id in 751 aa, and to Escherichia coli vitamin B12 receptor precursor BtuB or Bfe or Cer or DcrC or B3966 SWALL:BTUB_ECOLI (SWALL:P06129) (614 aa) fasta scores: E(): 1.1e-13, 24.4% id in 627 aa; putative exported TonB-dependent receptor protein 3151354 3287198 BF9343_2623 Bacteroides fragilis NCTC 9343 putative exported TonB-dependent receptor protein YP_212325.1 3149210 D 272559 CDS YP_212326.1 60682182 3287211 3151439..3155758 1 NC_003228.3 C-terminal region similar to Bacteroides thetaiotaomicron protoporphyrin IX magnesium chelatase BT0494 SWALL:Q8AAH1 (EMBL:AE016928) (854 aa) fasta scores: E(): 1.3e-192, 79.53% id in 855 aa, and N-terminal region to Bacteroides thetaiotaomicron cobalamin biosynthesis protein BT0495 SWALL:Q8AAH0 (EMBL:AE016928) (598 aa) fasta scores: E(): 1.6e-172, 77.58% id in 589 aa, and full length to Pseudomonas denitrificans CobN protein SWALL:COBN_PSEDE (SWALL:P29929) (1275 aa) fasta scores: E(): 5e-17, 26.09% id in 1253 aa; putative cobalamin biosynthesis-related protein 3155758 3287211 BF9343_2624 Bacteroides fragilis NCTC 9343 putative cobalamin biosynthesis-related protein YP_212326.1 3151439 D 272559 CDS YP_212327.1 60682183 3287196 3155767..3156450 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0493 SWALL:AAO75600 (EMBL:AE016928) (233 aa) fasta scores: E(): 2e-66, 76.88% id in 225 aa; hypothetical protein 3156450 3287196 BF9343_2625 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212327.1 3155767 D 272559 CDS YP_212328.1 60682184 3285850 3156495..3157097 1 NC_003228.3 Similar to Methanosarcina mazei integral membrane protein MM1597 SWALL:Q8PWI9 (EMBL:AE013393) (197 aa) fasta scores: E(): 1.2e-18, 38.86% id in 193 aa, and to Methanopyrus kandleri biopolymer transport protein TolQ or MK0066 SWALL:Q8TZ73 (EMBL:AE010306) (202 aa) fasta scores: E(): 2.1e-13, 32.14% id in 196 aa; hypothetical protein 3157097 3285850 BF9343_2626 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212328.1 3156495 D 272559 CDS YP_212329.1 60682185 3287202 3157094..3157420 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0491 SWALL:AAO75598 (EMBL:AE016928) (108 aa) fasta scores: E(): 4.4e-35, 92.59% id in 108 aa, and to Methanosarcina acetivorans hypothetical protein MA4642 SWALL:Q8TH80 (EMBL:AE011187) (127 aa) fasta scores: E(): 6.2e-14, 50% id in 106 aa; hypothetical protein 3157420 3287202 BF9343_2627 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212329.1 3157094 D 272559 CDS YP_212330.1 60682186 3287162 3157880..3160399 1 NC_003228.3 Similar to Treponema pallidum ribonucleoside-diphosphate reductase alpha chain NrdA or TP1008 SWALL:RIR1_TREPA (SWALL:O83972) (845 aa) fasta scores: E(): 8.5e-217, 63.78% id in 845 aa, and to Escherichia coli ribonucleoside-diphosphate reductase 2 alpha chain NrdE or B2675 SWALL:RIR3_ECOLI (SWALL:P39452) (713 aa) fasta scores: E(): 3e-38, 29.27% id in 731 aa; putative ribonucleoside-diphosphate reductase alpha chain 3160399 3287162 BF9343_2628 Bacteroides fragilis NCTC 9343 putative ribonucleoside-diphosphate reductase alpha chain YP_212330.1 3157880 D 272559 CDS YP_212331.1 60682187 3287190 3160425..3161474 1 NC_003228.3 Similar to Treponema pallidum ribonucleoside-diphosphate reductase beta chain NrdB or TP0053 SWALL:RIR2_TREPA (SWALL:O83092) (351 aa) fasta scores: E(): 7.4e-107, 72.28% id in 350 aa, and to Bacillus subtilis ribonucleoside-diphosphate reductase beta chain NrdF or BSU17390 SWALL:RIR2_BACSU (SWALL:P50621) (329 aa) fasta scores: E(): 1.7e-18, 26.56% id in 320 aa; putative ribonucleoside-diphosphate reductase beta chain 3161474 3287190 BF9343_2629 Bacteroides fragilis NCTC 9343 putative ribonucleoside-diphosphate reductase beta chain YP_212331.1 3160425 D 272559 CDS YP_212332.1 60682188 3287201 3161903..3162151 1 NC_003228.3 Similar only to Bacteroides thetaiotaomicron hypothetical protein BT0490 SWALL:AAO75597 (EMBL:AE016928) (88 aa) fasta scores: E(): 3.4e-09, 48.81% id in 84 aa; hypothetical protein 3162151 3287201 BF9343_2630 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212332.1 3161903 D 272559 CDS YP_212333.1 60682189 3287189 3162161..3162934 1 NC_003228.3 Similar to Campylobacter jejuni putative integral membrane protein CJ1166c SWALL:Q9PNC9 (EMBL:AL139077) (258 aa) fasta scores: E(): 3.6e-28, 36.75% id in 253 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YjjP or B4364 or SF4395 or S4665 SWALL:YJJP_ECOLI (SWALL:P39402) (256 aa) fasta scores: E(): 7.1e-16, 26.53% id in 260 aa; hypothetical protein 3162934 3287189 BF9343_2631 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212333.1 3162161 D 272559 CDS YP_212334.1 60682190 3287193 3162931..3163455 1 NC_003228.3 Similar to Campylobacter jejuni putative integral membrane protein CJ1165c SWALL:Q9PND0 (EMBL:AL139077) (164 aa) fasta scores: E(): 1.6e-22, 45.78% id in 166 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative integral membrane protein BT0974 SWALL:AAO76081 (EMBL:AE016929) (164 aa) fasta scores: E(): 9.9e-19, 39.05% id in 169 aa; hypothetical protein 3163455 3287193 BF9343_2632 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212334.1 3162931 D 272559 CDS YP_212335.1 60682191 3287150 complement(3163534..3164202) 1 NC_003228.3 Similar to Microscilla sp. PRE1 MS105, putative gluconate aldolase SWALL:Q93PC4 (EMBL:AF339846) (222 aa) fasta scores: E(): 6e-46, 53.67% id in 218 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri Khg/KdpG aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase] SWALL:ALKH_ECOLI (SWALL:P10177) (213 aa) fasta scores: E(): 5.2e-12, 32.21% id in 208 aa; putative glyoxylate-related aldolase 3164202 3287150 BF9343_2633 Bacteroides fragilis NCTC 9343 putative glyoxylate-related aldolase YP_212335.1 3163534 R 272559 CDS YP_212336.1 60682192 3287191 complement(3164249..3165274) 1 NC_003228.3 Similar to Microscilla sp. PRE1 MS104, putative gluconate kinase SWALL:Q93PC5 (EMBL:AF339846) (350 aa) fasta scores: E(): 2.8e-71, 55.9% id in 347 aa, and to Thermotoga maritima 2-keto-3-deoxygluconate kinase TM0067 SWALL:Q9WXS2 (EMBL:AE001693) (339 aa) fasta scores: E(): 1.2e-67, 54.41% id in 340 aa; putative kinase 3165274 3287191 BF9343_2634 Bacteroides fragilis NCTC 9343 putative kinase YP_212336.1 3164249 R 272559 CDS YP_212337.1 60682193 3287192 3165528..3166592 1 NC_003228.3 Similar to Rhizobium loti transcriptional regulator MLL7623 SWALL:Q985L4 (EMBL:AP003012) (345 aa) fasta scores: E(): 1.2e-13, 26.61% id in 357 aa, and to Brucella melitensis LacI-family transcription regulator BMEI1385 SWALL:Q8YFX7 (EMBL:AE009576) (343 aa) fasta scores: E(): 4.5e-12, 23.98% id in 346 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT0487 SWALL:Q8AAH8 (EMBL:AE016927) (354 aa) fasta scores: E(): 2.3e-115, 80.79% id in 354 aa; putative LacI-family transcriptional regulator 3166592 3287192 BF9343_2635 Bacteroides fragilis NCTC 9343 putative LacI-family transcriptional regulator YP_212337.1 3165528 D 272559 CDS YP_212338.1 60682194 3287163 complement(3166656..3167102) 1 NC_003228.3 Similar to Clostridium acetobutylicum predicted acetyltransferase CAC3445 SWALL:Q97DM7 (EMBL:AE007842) (147 aa) fasta scores: E(): 7.7e-35, 61.37% id in 145 aa, and to Lactococcus lactis hypothetical protein YfiL or LL0599 SWALL:Q9CHW9 (EMBL:AE006293) (154 aa) fasta scores: E(): 2.2e-16, 34.69% id in 147 aa; putative aceyltransferase 3167102 3287163 BF9343_2636 Bacteroides fragilis NCTC 9343 putative aceyltransferase YP_212338.1 3166656 R 272559 CDS YP_212339.1 60682195 3287194 complement(3167099..3167455) 1 NC_003228.3 Similar to Corynebacterium efficiens conserved hypothetical protein CE1534 SWALL:Q8FTM7 (EMBL:AP005219) (128 aa) fasta scores: E(): 1.2e-17, 44.34% id in 115 aa, and to Streptococcus pyogenes hypothetical protein SPYM18_2160 SWALL:Q8NZ39 (EMBL:AE010117) (112 aa) fasta scores: E(): 3.6e-16, 52.74% id in 91 aa; putative regulatory protein 3167455 3287194 BF9343_2637 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_212339.1 3167099 R 272559 CDS YP_212340.1 60682196 3287159 3167918..3170965 1 NC_003228.3 Similar in its full length to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1264 SWALL:Q8A8A3 (EMBL:AE016931) (1039 aa) fasta scores: E(): 0, 67.32% id in 1016 aa, and C-terminal region to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or B3210 or SF3250 or S3468 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 4.5e-32, 32.18% id in 407 aa; putative two-component system histidne kinase/reponse regulator fusion protein 3170965 3287159 BF9343_2638 Bacteroides fragilis NCTC 9343 putative two-component system histidne kinase/reponse regulator fusion protein YP_212340.1 3167918 D 272559 CDS YP_212341.1 60682197 3287164 complement(3171401..3172513) 1 NC_003228.3 Similar to Escherichia coli O6 hypothetical protein C3243 SWALL:Q8FEP9 (EMBL:AE016765) (370 aa) fasta scores: E(): 1.5e-82, 54.32% id in 370 aa, and to Deinococcus radiodurans hypothetical protein DRB0098 SWALL:Q9RZM5 (EMBL:AE001826) (413 aa) fasta scores: E(): 1.3e-10, 29.21% id in 380 aa; hypothetical protein 3172513 3287164 BF9343_2639 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212341.1 3171401 R 272559 CDS YP_212342.1 60682198 3287185 complement(3172510..3173223) 1 NC_003228.3 N-terminal region similar to Escherichia coli O6 hypothetical protein C3240 SWALL:Q8FEQ2 (EMBL:AE016765) (118 aa) fasta scores: E(): 3.7e-36, 77.67% id in 112 aa, and C-terminal region to Escherichia coli O6 hypothetical protein C3242 SWALL:Q8FEQ0 (EMBL:AE016765) (109 aa) fasta scores: E(): 3.7e-14, 46.15% id in 104 aa, and full length to Deinococcus radiodurans hypothetical protein DRB0100 SWALL:Q9RZM3 (EMBL:AE001826) (210 aa) fasta scores: E(): 2.4e-09, 37.78% id in 217 aa; hypothetical protein 3173223 3287185 BF9343_2640 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212342.1 3172510 R 272559 CDS YP_212343.1 60682199 3287186 complement(3173249..3173869) 1 NC_003228.3 Similar to Salmonella typhi, and Salmonella typhimurium putative peptide chain release factor PrfH or T2535 or STM0315 or STY0360 SWALL:AAO70119 (EMBL:AE016842) (204 aa) fasta scores: E(): 9.5e-32, 46.04% id in 202 aa, and to Escherichia coli peptide chain release factor homolog PrfH or B0236 SWALL:RFH_ECOLI (SWALL:P28369) (141 aa) fasta scores: E(): 4.9e-22, 53.03% id in 132 aa; putative peptide chain release factor 3173869 3287186 BF9343_2641 Bacteroides fragilis NCTC 9343 putative peptide chain release factor YP_212343.1 3173249 R 272559 CDS YP_212344.1 60682200 3287158 complement(3173874..3175271) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron protein RtcB BT1455 SWALL:AAO76562 (EMBL:AE016931) (465 aa) fasta scores: E(): 7.2e-152, 82.58% id in 465 aa, and to Deinococcus radiodurans RtcB protein DR0430 SWALL:Q9RX85 (EMBL:AE001902) (470 aa) fasta scores: E(): 9.9e-74, 48.82% id in 467 aa; hypothetical protein 3175271 3287158 BF9343_2642 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212344.1 3173874 R 272559 CDS YP_212345.1 60682201 3287142 3175871..3177172 1 NC_003228.3 Similar to Clostridium tetani Na+/H+ antiporter CTC02520 SWALL:AAO36980 (EMBL:AE015944) (440 aa) fasta scores: E(): 2.6e-78, 51.68% id in 416 aa, and to Bacillus subtilis Na(+)/H(+) NhaC or BSU09680 SWALL:NHAC_BACSU (SWALL:O07553) (453 aa) fasta scores: E(): 2e-07, 26.2% id in 458 aa; putative cation antiporter 3177172 3287142 BF9343_2643 Bacteroides fragilis NCTC 9343 putative cation antiporter YP_212345.1 3175871 D 272559 CDS YP_212346.1 60682202 3287143 complement(3177185..3179173) 1 NC_003228.3 hypothetical protein 3179173 3287143 BF9343_2644 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212346.1 3177185 R 272559 CDS YP_212347.1 60682203 3287148 3179356..3179718 1 NC_003228.3 hypothetical protein 3179718 3287148 BF9343_2645 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212347.1 3179356 D 272559 CDS YP_212348.1 60682204 3288912 3179871..3180416 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron 30S ribosomal protein S16 RpsP or BT1271 SWALL:RS16_BACTN (SWALL:Q9RQ15) (184 aa) fasta scores: E(): 1.3e-47, 91.84% id in 184 aa, and to Mycobacterium leprae 30S ribosomal protein S16 RpsP or ML1618 or MLCB250.32 SWALL:RS16_MYCLE (SWALL:O33014) (160 aa) fasta scores: E(): 1.5e-06, 33.33% id in 168 aa; putative 30S ribosomal protein S16 3180416 rpsP 3288912 rpsP Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S16 YP_212348.1 3179871 D 272559 CDS YP_212349.1 60682205 3287188 complement(3180531..3180926) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0881 SWALL:AAO75988 (EMBL:AE016929) (138 aa) fasta scores: E(): 1.4e-06, 33.33% id in 129 aa; hypothetical protein 3180926 3287188 BF9343_2647 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212349.1 3180531 R 272559 CDS YP_212350.1 60682206 3287144 complement(3180926..3182161) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2848 SWALL:AAO77954 (EMBL:AE016937) (402 aa) fasta scores: E(): 2.4e-51, 38.35% id in 412 aa; putative lipoprotein 3182161 3287144 BF9343_2648 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212350.1 3180926 R 272559 CDS YP_212351.1 60682207 3287147 complement(3182366..3182734) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative RNA-binding protein RbpA BT1887 SWALL:AAO76994 (EMBL:AE016933) (100 aa) fasta scores: E(): 1.4e-13, 58.82% id in 102 aa. Note: The rest of the databse matches are to eukaryotic entries; putative RNA-binding protein 3182734 3287147 BF9343_2649 Bacteroides fragilis NCTC 9343 putative RNA-binding protein YP_212351.1 3182366 R 272559 CDS YP_212352.1 60682208 3287118 complement(3182950..3184290) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron spermidine/putrescine ABC transporter BT1288 SWALL:AAO76395 (EMBL:AE016931) (449 aa) fasta scores: E(): 5.7e-155, 85.64% id in 439 aa, and to Escherichia coli putrescine-binding periplasmic protein precursor PotF or B0854 SWALL:POTF_ECOLI (SWALL:P31133) (370 aa) fasta scores: E(): 3.6e-14, 25% id in 372 aa; putative ABC transport system, lipoprotein 3184290 3287118 BF9343_2650 Bacteroides fragilis NCTC 9343 putative ABC transport system, lipoprotein YP_212352.1 3182950 R 272559 CDS YP_212353.1 60682209 3287122 complement(3184453..3185241) 1 NC_003228.3 Similar to Clostridium perfringens probable spermidine/putrescine ABC transporter PotC or CPE1970 SWALL:Q8XIZ3 (EMBL:AP003192) (266 aa) fasta scores: E(): 9e-43, 47.6% id in 271 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 spermidine/putrescine transport system permease protein PotC or B1124 or C1399 or Z1763 or ECS1500 SWALL:POTC_ECOLI (SWALL:P23859) (264 aa) fasta scores: E(): 8.5e-29, 37.05% id in 251 aa; putative ABC transport system, membrane protein 3185241 3287122 BF9343_2651 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212353.1 3184453 R 272559 CDS YP_212354.1 60682210 3287175 complement(3185235..3186032) 1 NC_003228.3 Similar to Archaeoglobus fulgidus spermidine/putrescine ABC transporter, permease protein AF1607 SWALL:O28666 (EMBL:AE000991) (248 aa) fasta scores: E(): 6.1e-24, 32.91% id in 240 aa, and to Escherichia coli putrescine transport system permease protein PotH or B0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 1.3e-14, 31.25% id in 272 aa; putative ABC transport system, membrane protein 3186032 3287175 BF9343_2652 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212354.1 3185235 R 272559 CDS YP_212355.1 60682211 3287152 complement(3186050..3187435) 1 NC_003228.3 Similar (although longer in its C-terminal region) to Clostridium perfringens probable spermidine/putrescine ABC transporter PotA or CPE1968 SWALL:Q8XIZ5 (EMBL:AP003192) (349 aa) fasta scores: E(): 1.3e-75, 59.24% id in 346 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri spermidine/putrescine transport ATP-binding protein PotA or B1126 or C1477 or Z1831 or ECS1571 or SF1128 or S1208 SWALL:POTA_ECOLI (SWALL:P23858) (378 aa) fasta scores: E(): 2.7e-50, 48.52% id in 338 aa; putative ABC transport system, ATP-binding protein 3187435 3287152 BF9343_2653 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_212355.1 3186050 R 272559 CDS YP_212356.1 60682212 3287180 3187573..3188676 1 NC_003228.3 Full length similar to Porphyromonas gingivalis W83 thioredoxin family protein PG1638 SWALL:AAQ66661 (EMBL:AE017177) (328 aa) fasta scores: E(): 3.3e-60, 53.59% id in 334 aa, C-terminal region to Bacillus anthracis thiol-disulfide oxidoreductase ResA or BA1494 SWALL:RESA_BACAA (SWALL:Q81SZ9) (173 aa) fasta scores: E(): 1.7e-09, 33.33% id in 147 aa, and N-terminal region to Bacteroides thetaiotaomicron hypothetical protein BT0239 SWALL:Q8AB72 (EMBL:AE016926) (244 aa) fasta scores: E(): 5.1e-06, 28.23% id in 209 aa; putative lipoprotein/thioderoxin 3188676 3287180 BF9343_2654 Bacteroides fragilis NCTC 9343 putative lipoprotein/thioderoxin YP_212356.1 3187573 D 272559 CDS YP_212357.1 60682213 3287131 complement(3188809..3189459) 1 NC_003228.3 hypothetical protein 3189459 3287131 BF9343_2655 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212357.1 3188809 R 272559 CDS YP_212358.1 60682214 3287154 complement(3189560..3192103) 1 NC_003228.3 Similar to Nitrosomonas europaea putative alpha-glucan phosphorylase, putative NE0074 SWALL:Q82Y16 (EMBL:BX321856) (851 aa) fasta scores: E(): 1e-120, 38.21% id in 853 aa, and to Streptomyces coelicolor putative glycogen phosphorylase GlgP SWALL:O70011 (EMBL:AJ001205) (872 aa) fasta scores: E(): 1.5e-66, 35.45% id in 849 aa; putative glycogen phosphorylase 3192103 3287154 BF9343_2656 Bacteroides fragilis NCTC 9343 putative glycogen phosphorylase YP_212358.1 3189560 R 272559 CDS YP_212359.1 60682215 3287038 complement(3192158..3193819) 1 NC_003228.3 Similar (although shorter in its C-terminal region) to Neurospora crassa glycogen [starch] synthase 7F4.080 SWALL:GYS_NEUCR (SWALL:O93869) (706 aa) fasta scores: E(): 7.4e-26, 28.19% id in 603 aa, and to Saccharomyces cerevisiae glycogen [starch] synthase, isoform 1 Gsy1 or YFR015c SWALL:GYS1_YEAST (SWALL:P23337) (707 aa) fasta scores: E(): 2.9e-15, 28.41% id in 623 aa; putative glycogen biosynthesis-related protein 3193819 3287038 BF9343_2657 Bacteroides fragilis NCTC 9343 putative glycogen biosynthesis-related protein YP_212359.1 3192158 R 272559 CDS YP_212360.1 60682216 3287116 complement(3194049..3194510) 1 NC_003228.3 Similar to Streptococcus pyogenes V-type Na+-ATPase subunit K SPYM18_0145 SWALL:Q8P2U9 (EMBL:AE009965) (159 aa) fasta scores: E(): 7.1e-12, 37.93% id in 145 aa, and to Enterococcus hirae V-type sodium ATP synthase subunit K NtpK or NtpN SWALL:NTPK_ENTHR (SWALL:P43457) (156 aa) fasta scores: E(): 7.4e-11, 36.8% id in 144 aa; putative V(vacuolar)-type Na+-ATP synthase subunit K 3194510 3287116 BF9343_2658 Bacteroides fragilis NCTC 9343 putative V(vacuolar)-type Na+-ATP synthase subunit K YP_212360.1 3194049 R 272559 CDS YP_212361.1 60682217 3287174 complement(3194555..3196372) 1 NC_003228.3 Similar to Clostridium tetani V-type sodium ATP synthase subunit I CTC00994 SWALL:AAO35581 (EMBL:AE015939) (656 aa) fasta scores: E(): 7.8e-34, 28.85% id in 662 aa, and to Enterococcus hirae V-type sodium ATP synthase subunit I NtpI or NtpM SWALL:NTPI_ENTHR (SWALL:P43439) (664 aa) fasta scores: E(): 1.6e-28, 26.61% id in 665 aa; putative V(vacuolar)-type Na+ ATP synthase subunit I 3196372 3287174 BF9343_2659 Bacteroides fragilis NCTC 9343 putative V(vacuolar)-type Na+ ATP synthase subunit I YP_212361.1 3194555 R 272559 CDS YP_212362.1 60682218 3289401 complement(3196369..3196974) 1 NC_003228.3 Similar to Treponema pallidum V-type ATP synthase subunit D 1 AtpD1 or TP0428 SWALL:VAD1_TREPA (SWALL:O83443) (206 aa) fasta scores: E(): 4.8e-12, 30.76% id in 182 aa, and to Borrelia burgdorferi V-type ATP synthase subunit D AtpD or BB0092 SWALL:VATD_BORBU (SWALL:O51119) (204 aa) fasta scores: E(): 1.2e-10, 30.45% id in 197 aa; putative V(vacuolar)-type ATP synthase subunit D 3196974 3289401 BF9343_2660 Bacteroides fragilis NCTC 9343 putative V(vacuolar)-type ATP synthase subunit D YP_212362.1 3196369 R 272559 CDS YP_212363.1 60682219 3289383 complement(3196987..3198306) 1 NC_003228.3 Similar to Thermococcus sp. V-type ATP synthase beta chain AtpB SWALL:VATB_THESI (SWALL:O32467) (463 aa) fasta scores: E(): 9.2e-44, 36.28% id in 452 aaTreponema pallidum V-type ATP synthase beta chain 1 AtpB1 or TP0427 SWALL:VAB1_TREPA (SWALL:O83442) (430 aa) fasta scores: E(): 2.8e-69, 47.92% id in 434 aa, and to; putative V-type ATP synthase beta chain 3198306 3289383 BF9343_2661 Bacteroides fragilis NCTC 9343 putative V-type ATP synthase beta chain YP_212363.1 3196987 R 272559 CDS YP_212364.1 60682220 3287119 complement(3198336..3200093) 1 NC_003228.3 Similar to Chlamydia muridarum V-type ATP synthase alpha chain AtpA or TC0582 SWALL:VATA_CHLMU (SWALL:Q9PK85) (591 aa) fasta scores: E(): 9.9e-92, 46.7% id in 576 aa, and to Treponema pallidum V-type ATP synthase alpha chain 1 AtpA1 or TP0426 SWALL:VAA1_TREPA (SWALL:O83441) (589 aa) fasta scores: E(): 1.8e-84, 46.41% id in 586 aa; putative V-type ATP synthase alpha subunit 3200093 3287119 BF9343_2662 Bacteroides fragilis NCTC 9343 putative V-type ATP synthase alpha subunit YP_212364.1 3198336 R 272559 CDS YP_212365.1 60682221 3287044 complement(3200130..3200969) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1300 SWALL:AAO76407 (EMBL:AE016931) (280 aa) fasta scores: E(): 1.2e-96, 87.77% id in 278 aa; hypothetical protein 3200969 3287044 BF9343_2663 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212365.1 3200130 R 272559 CDS YP_212366.1 60682222 3287041 complement(3200981..3201571) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 V-type ATPase, subunit E, putative PG1801 SWALL:AAQ66799 (EMBL:AE017178) (196 aa) fasta scores: E(): 1.4e-30, 51.02% id in 196 aa, and to Borrelia burgdorferi Vv-type ATP synthase subunit E AtpE or BB0096 SWALL:VATE_BORBU (SWALL:O51123) (200 aa) fasta scores: E(): 8e-05, 23.26% id in 202 aa; putative V-type ATP synthase subunit E 3201571 3287041 BF9343_2664 Bacteroides fragilis NCTC 9343 putative V-type ATP synthase subunit E YP_212366.1 3200981 R 272559 CDS YP_212367.1 60682223 3287120 3207636..3208112 1 NC_003228.3 hypothetical protein 3208112 3287120 BF9343_2665 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212367.1 3207636 D 272559 CDS YP_212368.1 60682224 3287043 complement(3209191..3210342) 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis N-acetylglucosamine-6-phosphate deacetylase NagA or TTE0232 SWALL:Q8RD18 (EMBL:AE012996) (390 aa) fasta scores: E(): 3.6e-36, 33.42% id in 380 aa, and to Escherichia coli, and Escherichia coli O157:H7 N-acetylglucosamine-6-phosphate deacetylase NagA or B0677 or Z0824 or ECS0707 SWALL:NAGA_ECOLI (SWALL:P15300) (382 aa) fasta scores: E(): 1.2e-26, 31.08% id in 386 aa; putative N-acetylglucosamine-6-phosphate deacetylase 3210342 3287043 BF9343_2666 Bacteroides fragilis NCTC 9343 putative N-acetylglucosamine-6-phosphate deacetylase YP_212368.1 3209191 R 272559 CDS YP_212369.1 60682225 3287042 3210499..3211176 1 NC_003228.3 Similar to Staphylococcus epidermidis alkaline phosphatase synthesis transcriptional regulatory protein SE1369 SWALL:Q8CNX5 (EMBL:AE016748) (236 aa) fasta scores: E(): 6.9e-24, 35.65% id in 230 aa, and to Streptococcus agalactiae DNA-binding response regulator SAG2122 SWALL:Q8DWU1 (EMBL:AE014287) (223 aa) fasta scores: E(): 1.5e-22, 35.74% id in 221 aa; putative two component system response regulator 3211176 3287042 BF9343_2667 Bacteroides fragilis NCTC 9343 putative two component system response regulator YP_212369.1 3210499 D 272559 CDS YP_212370.1 60682226 3287039 3211194..3212492 1 NC_003228.3 Similar to Xanthomonas axonopodis two-component system sensor protein ColS or XAC3249 SWALL:Q8PHK4 (EMBL:AE011971) (385 aa) fasta scores: E(): 1.2e-14, 29.46% id in 319 aa, and to Escherichia coli sensor protein QseC or B3026 SWALL:QSEC_ECOLI (SWALL:P40719) (449 aa) fasta scores: E(): 8.4e-14, 23.7% id in 443 aa; putative two component system histidine kinase 3212492 3287039 BF9343_2668 Bacteroides fragilis NCTC 9343 putative two component system histidine kinase YP_212370.1 3211194 D 272559 CDS YP_212371.1 60682227 3287051 3212811..3213248 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative periplasmic protein BTR0923 SWALL:AAO76030 (EMBL:AE016929) (145 aa) fasta scores: E(): 2.5e-41, 79.31% id in 145 aa, and to Campylobacter jejuni putative periplasmic protein CJ1626c SWALL:Q9PM49 (EMBL:AL139079) (138 aa) fasta scores: E(): 1.6e-10, 31.91% id in 141 aa; hypothetical protein 3213248 3287051 BF9343_2669 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212371.1 3212811 D 272559 CDS YP_212372.1 60682228 3287048 3213264..3214100 1 NC_003228.3 Similar only to Bacteroides thetaiotaomicron entries, e.g. hypothetical protein BT0922 SWALL:AAO76029 (EMBL:AE016929) (293 aa) fasta scores: E(): 2.1e-39, 52.54% id in 295 aa; putative lipoprotein 3214100 3287048 BF9343_2670 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212372.1 3213264 D 272559 CDS YP_212373.1 60682229 3287040 complement(3214155..3215297) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron clostripain-related protein BT1308 SWALL:AAO76415 (EMBL:AE016931) (399 aa) fasta scores: E(): 4.3e-66, 46.26% id in 402 aa, and to Thermotoga maritima clostripain-related protein TM0643 SWALL:Q9WZB1 (EMBL:AE001738) (468 aa) fasta scores: E(): 3.9e-08, 24.11% id in 365 aa; putative peptidase 3215297 3287040 BF9343_2671 Bacteroides fragilis NCTC 9343 putative peptidase YP_212373.1 3214155 R 272559 CDS YP_212374.1 60682230 3287049 complement(3215427..3215828) 1 NC_003228.3 Similar only to Bacteroides thetaiotaomicron hypothetical protein BT1309 SWALL:AAO76416 (EMBL:AE016931) (133 aa) fasta scores: E(): 7.2e-32, 67.16% id in 134 aa; conserved exported hypothetical protein 3215828 3287049 BF9343_2672 Bacteroides fragilis NCTC 9343 conserved exported hypothetical protein YP_212374.1 3215427 R 272559 CDS YP_212375.1 60682231 3287354 complement(3215929..3216789) 1 NC_003228.3 Similar to Chlorobium tepidum SigA SWALL:P71149 (EMBL:U67718) (299 aa) fasta scores: E(): 1e-55, 65.55% id in 299 aa, and to Clostridium tetani RNA polymerase sigma factor RpoD or CTC00867 SWALL:AAO35464 (EMBL:AE015939) (282 aa) fasta scores: E(): 7.1e-38, 42.96% id in 270 aa; putative sigma factor A 3216789 sigA 3287354 sigA Bacteroides fragilis NCTC 9343 putative sigma factor A YP_212375.1 3215929 R 272559 CDS YP_212376.1 60682232 3287045 complement(3216824..3217123) 1 NC_003228.3 hypothetical protein 3217123 3287045 BF9343_2674 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212376.1 3216824 R 272559 CDS YP_212377.1 60682233 3287050 complement(3217136..3218683) 1 NC_003228.3 Similar to Rhizobium loti serine protease, HtrA/DegQ/DegS family MLL5022 SWALL:Q98CS8 (EMBL:AP003005) (513 aa) fasta scores: E(): 6.2e-35, 32.75% id in 519 aa, and to Escherichia coli, and Escherichia coli O157:H7 protease DO precursor DegP or HtrA or Ptd or B0161 or Z0173 or ECS0165 SWALL:DEGP_ECOLI (SWALL:P09376) (474 aa) fasta scores: E(): 8.3e-30, 39.79% id in 392 aa; putative heat shock-related protease 3218683 3287050 BF9343_2675 Bacteroides fragilis NCTC 9343 putative heat shock-related protease YP_212377.1 3217136 R 272559 CDS YP_212378.1 60682234 3287046 complement(3218989..3220323) 1 NC_003228.3 Similar to Thermotoga maritima hypothetical protein TM0007 SWALL:Q9WXM2 (EMBL:AE001689) (438 aa) fasta scores: E(): 6.6e-30, 32.41% id in 398 aa, and to Thermoanaerobacter tengcongensis transglutaminase-like enzymes, putative cysteine proteases TTE0036 SWALL:Q8RDI9 (EMBL:AE012978) (440 aa) fasta scores: E(): 2.9e-27, 31.81% id in 418 aa; putative lipoprotein 3220323 3287046 BF9343_2676 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212378.1 3218989 R 272559 CDS YP_212379.1 60682235 3287058 complement(3220355..3221371) 1 NC_003228.3 Similar to Halobacterium sp. chloromuconate cycloisomerase YkfB1 or VNG1837G SWALL:Q9HP25 (EMBL:AE005084) (343 aa) fasta scores: E(): 6.9e-38, 39.18% id in 342 aa, and to Rhodococcus opacus muconate cycloisomerase I CatB SWALL:CATB_RHOOP (SWALL:P95608) (373 aa) fasta scores: E(): 9.1e-15, 28.9% id in 346 aa, and to Pseudomonas sp. chloromuconate cycloisomerase TcbD SWALL:TCBD_PSESQ (SWALL:P27099) (370 aa) fasta scores: E(): 1.6e-11, 27.74% id in 328 aa; putative muconate cycloisomerase 3221371 3287058 BF9343_2677 Bacteroides fragilis NCTC 9343 putative muconate cycloisomerase YP_212379.1 3220355 R 272559 CDS YP_212380.1 60682236 3287047 complement(3221520..3222722) 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis cell wall-associated hydrolases Spr or TTE0880 SWALL:Q8RBE1 (EMBL:AE013055) (306 aa) fasta scores: E(): 3.9e-13, 26.69% id in 281 aa, and to Bacillus sphaericus dipeptidyl-peptidase VI SWALL:DPP6_BACSH (SWALL:P39043) (271 aa) fasta scores: E(): 5e-10, 25.09% id in 267 aa; putative peptidase 3222722 3287047 BF9343_2678 Bacteroides fragilis NCTC 9343 putative peptidase YP_212380.1 3221520 R 272559 CDS YP_212381.1 60682237 3287059 3223481..3224800 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 ribonuclease BN, putative PG0958 SWALL:AAQ66088 (EMBL:AE017175) (411 aa) fasta scores: E(): 4.1e-72, 44.79% id in 413 aa, and to (although longer in its C-terminal region) Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 tRNA processing ribonuclease BN Rbn or B3886 or C4833 or Z5425 or ECS4809 SWALL:RBN_ECOLI (SWALL:P32146) (290 aa) fasta scores: E(): 6.1e-16, 28.45% id in 253 aa; putative tRNA processing ribonuclease 3224800 3287059 BF9343_2679 Bacteroides fragilis NCTC 9343 putative tRNA processing ribonuclease YP_212381.1 3223481 D 272559 CDS YP_212382.1 60682238 3287052 complement(3225045..3225584) 1 NC_003228.3 Similar to Clostridium perfringens hypothetical protein CPE0921 SWALL:Q8XLW9 (EMBL:AP003188) (180 aa) fasta scores: E(): 3.2e-27, 47.51% id in 181 aa, and to Bacillus subtilis putative NAD YdgI or BSU05660 SWALL:YDGI_BACSU (SWALL:P96707) (209 aa) fasta scores: E(): 5.9e-05, 27.17% id in 195 aa; putative nitroreductase 3225584 3287052 BF9343_2680 Bacteroides fragilis NCTC 9343 putative nitroreductase YP_212382.1 3225045 R 272559 CDS YP_212383.1 60682239 3289300 complement(3225615..3226217) 1 NC_003228.3 Similar to Bacillus subtilis riboflavin synthase alpha chain RibE or RibB or BSU23270 SWALL:RISA_BACSU (SWALL:P16440) (215 aa) fasta scores: E(): 2.2e-24, 41.7% id in 199 aa, and to Streptococcus pneumoniae riboflavin synthase, alpha subunit SP0177 SWALL:Q97SY6 (EMBL:AE007333) (211 aa) fasta scores: E(): 1.1e-24, 40.7% id in 199 aa; riboflavin synthase alpha chain 3226217 ribE 3289300 ribE Bacteroides fragilis NCTC 9343 riboflavin synthase alpha chain YP_212383.1 3225615 R 272559 CDS YP_212384.1 60682240 3287060 complement(3226615..3227304) 1 NC_003228.3 Similar to Pseudomonas aeruginosa phosphate transport system protein PhoU or PA5365 SWALL:PHOU_PSEAE (SWALL:Q51547) (242 aa) fasta scores: E(): 1.1e-12, 30.84% id in 214 aa, and to Enterobacter cloacae phosphate transport system protein PhoU SWALL:PHOU_ENTCL (SWALL:O32488) (241 aa) fasta scores: E(): 1.7e-11, 29.81% id in 218 aa; putative phosphate transport chemotaxis-related protein 3227304 3287060 BF9343_2682 Bacteroides fragilis NCTC 9343 putative phosphate transport chemotaxis-related protein YP_212384.1 3226615 R 272559 CDS YP_212385.1 60682241 3289291 complement(3227380..3228141) 1 NC_003228.3 Similar to Edwardsiella tarda phosphate import ATP-binding protein PstB SWALL:PSTB_EDWTA (SWALL:Q9AML4) (259 aa) fasta scores: E(): 2.1e-52, 60.15% id in 251 aa, and to Methanococcus jannaschii probable phosphate import ATP-binding protein PstB or MJ1012 SWALL:PSTB_METJA (SWALL:Q58418) (252 aa) fasta scores: E(): 4.6e-57, 63.74% id in 251 aa; phosphate import ATP-binding protein 3228141 pstB 3289291 pstB Bacteroides fragilis NCTC 9343 phosphate import ATP-binding protein YP_212385.1 3227380 R 272559 CDS YP_212386.1 60682242 3289347 complement(3228177..3229052) 1 NC_003228.3 Similar to Escherichia coli phosphate transport system permease protein PstA or PhoT or B3726 SWALL:PSTA_ECOLI (SWALL:P07654) (296 aa) fasta scores: E(): 3.2e-21, 36.12% id in 263 aa, and to Methanosarcina acetivorans phosphate ABC transporter, permease protein PstA or MA0889 SWALL:Q8TSA9 (EMBL:AE010753) (307 aa) fasta scores: E(): 2.6e-50, 51.42% id in 280 aa; phosphate transport system permease protein 3229052 pstA 3289347 pstA Bacteroides fragilis NCTC 9343 phosphate transport system permease protein YP_212386.1 3228177 R 272559 CDS YP_212387.1 60682243 3287053 complement(3229054..3230250) 1 NC_003228.3 Similar to (although lonfer in its N-terminal region) Methanosarcina acetivorans phosphate ABC transporter, permease protein PstC or MA0888 SWALL:Q8TSB0 (EMBL:AE010753) (296 aa) fasta scores: E(): 2.3e-49, 49.12% id in 287 aa, and to Streptococcus pneumoniae phosphate ABC transporter, permease protein SP2085 SWALL:Q97NF3 (EMBL:AE007497) (287 aa) fasta scores: E(): 2.2e-34, 39.72% id in 287 aa; putative phosphate-related ABC transport system, membrane protein 3230250 3287053 BF9343_2685 Bacteroides fragilis NCTC 9343 putative phosphate-related ABC transport system, membrane protein YP_212387.1 3229054 R 272559 CDS YP_212388.1 60682244 3287057 3230535..3231386 1 NC_003228.3 Similar to Methanosarcina mazei phosphate-binding protein MM2005 SWALL:Q8PVG0 (EMBL:AE013439) (302 aa) fasta scores: E(): 1.1e-39, 49.59% id in 246 aa, and to Bacillus subtilis probable ABC transporter binding protein precursor YqgG or BSU24990 SWALL:YQGG_BACSU (SWALL:P46338) (300 aa) fasta scores: E(): 1.6e-17, 31.04% id in 248 aa; putative phosphate-related ABC transport system, exported protein 3231386 3287057 BF9343_2686 Bacteroides fragilis NCTC 9343 putative phosphate-related ABC transport system, exported protein YP_212388.1 3230535 D 272559 CDS YP_212389.1 60682245 3286811 3231448..3233196 1 NC_003228.3 Similar to Escherichia coli glutaminyl-tRNA synthetase GlnS or B0680 SWALL:SYQ_ECOLI (SWALL:P00962) (553 aa) fasta scores: E(): 1.7e-107, 52.53% id in 571 aa, and to Clostridium perfringens glutaminyl-tRNA synthetase GlnS or GltX or CPE0645 SWALL:SYQ_CLOPE (SWALL:Q8XMP3) (552 aa) fasta scores: E(): 4.5e-113, 53.72% id in 564 aa; glutaminyl-tRNA synthetase 3233196 glnS 3286811 glnS Bacteroides fragilis NCTC 9343 glutaminyl-tRNA synthetase YP_212389.1 3231448 D 272559 CDS YP_212390.1 60682246 3287066 3233295..3234731 1 NC_003228.3 Similar only to Bacteroides thetaiotaomicron TRP-domain containing protein BT1326 SWALL:Q8A848 (EMBL:AE016931) (478 aa) fasta scores: E(): 1e-84, 48.54% id in 480 aa; hypothetical protein 3234731 3287066 BF9343_2688 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212390.1 3233295 D 272559 CDS YP_212391.1 60682247 3287065 3234865..3235506 1 NC_003228.3 Similar to Anabaena sp. hypothetical protein ALL5093 SWALL:Q8YM47 (EMBL:AP003598) (205 aa) fasta scores: E(): 3e-20, 37.5% id in 200 aa, and to Lactococcus lactis alkaline phosphatase like protein Apl or LL0713 SWALL:APL_LACLA (SWALL:Q9CHL6) (214 aa) fasta scores: E(): 6.7e-18, 33.49% id in 203 aa; hypothetical protein 3235506 3287065 BF9343_2689 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212391.1 3234865 D 272559 CDS YP_212392.1 60682248 3287062 3235869..3236486 1 NC_003228.3 Similar only to Bacteroides thetaiotaomicron hypothetical protein BT1287 SWALL:AAO76394 (EMBL:AE016931) (212 aa) fasta scores: E(): 5.3e-17, 40% id in 215 aa; hypothetical protein 3236486 3287062 BF9343_2690 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212392.1 3235869 D 272559 CDS YP_212393.1 60682249 3285869 complement(3236634..3237134) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Shigella flexneri, and Shigella dysenteriae thiol peroxidase Tpx or B1324 or C1796 or Z2452 or ECS1903 or SF1330 or S1413 SWALL:TPX_ECOLI (SWALL:P37901) (167 aa) fasta scores: E(): 4.4e-31, 57.31% id in 164 aa, and to Chlorobium tepidum probable thiol peroxidase Tpx or CT0754 SWALL:TPX_CHLTE (SWALL:Q8KED5) (168 aa) fasta scores: E(): 3.2e-34, 60.6% id in 165 aa; putative thiol peroxidase 3237134 tpx 3285869 tpx Bacteroides fragilis NCTC 9343 putative thiol peroxidase YP_212393.1 3236634 R 272559 CDS YP_212394.1 60682250 3287067 3237228..3237809 1 NC_003228.3 Similar to Listeria monocytogenes hypothetical protein LMO0596 SWALL:Q8Y9D4 (EMBL:AL591975) (175 aa) fasta scores: E(): 2.8e-12, 30.86% id in 162 aa, and to Enterococcus faecalis membrane protein, putative EF0025 SWALL:Q839X5 (EMBL:AE016947) (175 aa) fasta scores: E(): 7.3e-11, 28.74% id in 167 aa; hypothetical protein 3237809 3287067 BF9343_2692 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212394.1 3237228 D 272559 CDS YP_212395.1 60682251 3289256 complement(3237948..3238541) 1 NC_003228.3 Similar to Porphyromonas gingivalis site-specific recombinase, resolvase family PG0864 SWALL:Q7MW03 (EMBL:AE017175) (206 aa) fasta scores: E(): 1.6e-27, 48.24% id in 199 aa, and to Clostridium perfringens resolvase Res or ResP or pCP15 SWALL:RES1_CLOPE (SWALL:Q93MD2) (189 aa) fasta scores: E(): 2.8e-09, 29.14% id in 199 aa. Note: This CDS is the inversion factor that modulates the expression and inversion of seven invertible promoter regions of the capsular polysaccharide biosynthesis loci. It is classified within the site-specific recombinases family; ref: Coyne et al., PNAS (2003)100(18)10446-10451; multiple promoter invertase 3238541 mpi 3289256 mpi Bacteroides fragilis NCTC 9343 multiple promoter invertase YP_212395.1 3237948 R 272559 CDS YP_212396.1 60682252 3287063 3238557..3239696 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 integrase PG0838 SWALL:AAQ65989 (EMBL:AE017174) (432 aa) fasta scores: E(): 1.9e-06, 24.83% id in 310 aa, and to Bacillus cereus DNA integration/recombination/invertion protein BC4089 SWALL:Q818Z7 (EMBL:AE017011) (296 aa) fasta scores: E(): 3.7e-05, 25.52% id in 286 aa; putative recombinase/integrase 3239696 3287063 BF9343_2694 Bacteroides fragilis NCTC 9343 putative recombinase/integrase YP_212396.1 3238557 D 272559 CDS YP_212397.1 60682253 3287072 3240154..3241557 1 NC_003228.3 Similar to Vibrio parahaemolyticus CpsA SWALL:AAO61842 (EMBL:AY217749) (466 aa) fasta scores: E(): 1e-49, 38.94% id in 380 aa, and to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or B2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 5.6e-46, 35.01% id in 457 aa; putative EPS related membrane protein 3241557 3287072 BF9343_2695 Bacteroides fragilis NCTC 9343 putative EPS related membrane protein YP_212397.1 3240154 D 272559 CDS YP_212398.1 60682254 3287064 3241713..3242501 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 polysaccharide export protein, BexD/CtrA/VexA family PG0437 SWALL:AAQ65637 (EMBL:AE017173) (307 aa) fasta scores: E(): 9.7e-36, 41.5% id in 265 aa, and partly to Ralstonia solanacearum EPS I polysaccharide export outer membrane protein precursor EpsA SWALL:EPA2_RALSO (SWALL:Q45407) (377 aa) fasta scores: E(): 2.4e-07, 32.1% id in 190 aa; putative EPS related membrane protein 3242501 3287064 BF9343_2696 Bacteroides fragilis NCTC 9343 putative EPS related membrane protein YP_212398.1 3241713 D 272559 CDS YP_212399.1 60682255 3287061 3242515..3244920 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 capsular polysaccharide transport protein, putative PG0436 SWALL:AAQ65636 (EMBL:AE017173) (822 aa) fasta scores: E(): 1.8e-72, 32.6% id in 773 aa, and to Acinetobacter johnsonii tyrosine-protein kinase Ptk SWALL:PTK_ACIJO (SWALL:O52788) (733 aa) fasta scores: E(): 9.1e-24, 22.7% id in 806 aa; putative EPS related membrane protein 3244920 3287061 BF9343_2697 Bacteroides fragilis NCTC 9343 putative EPS related membrane protein YP_212399.1 3242515 D 272559 CDS YP_212400.1 60682256 3287073 complement(3245050..3245499) 1 NC_003228.3 Similar to Haemophilus ducreyi possible N-acetylmuramoyl-L-alanine amidase HD0112 SWALL:AAP95115 (EMBL:AE017151) (173 aa) fasta scores: E(): 3.7e-20, 43.22% id in 155 aa, and to Bacteriophage T7 N-acetylmuramoyl-L-alanine amidase SWALL:NAAA_BPT7 (SWALL:P00806) (150 aa) fasta scores: E(): 6.7e-13, 37.06% id in 116 aa; putative N-acetylmuramoyl-L-alanine amidase 3245499 3287073 BF9343_2698 Bacteroides fragilis NCTC 9343 putative N-acetylmuramoyl-L-alanine amidase YP_212400.1 3245050 R 272559 CDS YP_212401.1 60682257 3287070 complement(3245780..3246232) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1990 SWALL:AAO77097 (EMBL:AE016934) (161 aa) fasta scores: E(): 1.7e-20, 49.63% id in 137 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4735 SWALL:AAO79840 (EMBL:AE016946) (167 aa) fasta scores: E(): 1.5e-17, 44.29% id in 149 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative non-specific DNA-binding protein BT4032 SWALL:AAO79137 (EMBL:AE016943) (158 aa) fasta scores: E(): 1.4e-09, 34.86% id in 152 aa; hypothetical protein 3246232 3287070 BF9343_2699 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212401.1 3245780 R 272559 CDS YP_212402.1 60682258 3287069 3246424..3246672 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1988 SWALL:AAO77095 (EMBL:AE016934) (78 aa) fasta scores: E(): 3.9e-11, 48.05% id in 77 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0708 SWALL:AAO75815 (EMBL:AE016928) (81 aa) fasta scores: E(): 5.9e-09, 43.9% id in 82 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1704 SWALL:AAO76811 (EMBL:AE016932) (72 aa) fasta scores: E(): 1.6e-07, 42.85% id in 70 aa; hypothetical protein 3246672 3287069 BF9343_2700 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212402.1 3246424 D 272559 CDS YP_212403.1 60682259 3287080 complement(3246715..3246909) 1 NC_003228.3 no significant database matches; hypothetical protein 3246909 3287080 BF9343_2701 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212403.1 3246715 R 272559 CDS YP_212404.1 60682260 3287071 complement(3246943..3249318) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1987 SWALL:AAO77094 (EMBL:AE016934) (811 aa) fasta scores: E(): 7.1e-87, 40.2% id in 791 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0709 SWALL:AAO75816 (EMBL:AE016928) (791 aa) fasta scores: E(): 2.4e-72, 31.25% id in 800 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0404 SWALL:AAO75511 (EMBL:AE016927) (775 aa) fasta scores: E(): 1.1e-55, 27.54% id in 777 aa; hypothetical protein 3249318 3287071 BF9343_2702 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212404.1 3246943 R 272559 CDS YP_212405.1 60682261 3287068 3249979..3250497 1 NC_003228.3 Pseudogene. Similar to Bacteroides fragilis transcriptional regulator UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 2e-12, 32.29% id in 161 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1358 SWALL:AAO76465 (EMBL:AE016931) (190 aa) fasta scores: E(): 6.2e-46, 71.68% id in 166 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1725 SWALL:AAO76832 (EMBL:AE016933) (192 aa) fasta scores: E(): 3.2e-45, 70% id in 170 aa. Note: This CDS contians a frameshift after residue 9; putative transcriptional regulator (pseudogene) 3250497 3287068 BF9343_2703 Bacteroides fragilis NCTC 9343 putative transcriptional regulator (pseudogene) YP_212405.1 3249979 D 272559 CDS YP_212406.1 60682262 3287079 3250670..3252214 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative flippase wzx SWALL:Q9RGK3 (EMBL:AF125164) (509 aa) fasta scores: E(): 9e-11, 19.92% id in 502 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0467 SWALL:Q8AAJ7 (EMBL:AE016927) (489 aa) fasta scores: E(): 4.1e-104, 53.6% id in 485 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0040 SWALL:Q8ABS0 (EMBL:AE016926) (513 aa) fasta scores: E(): 7.2e-99, 49.51% id in 513 aa; Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0467 SWALL:AAO75574 (EMBL:AE016927) (489 aa) fasta scores: E(): 7.8e-105, 53.6% id in 485 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0040 SWALL:AAO75147 (EMBL:AE016926) (513 aa) fasta scores: E(): 1.5e-99, 49.51% id in 513 aa, and to Vibrio parahaemolyticus putative flippase vp1318 SWALL:BAC59581 (EMBL:AP005077) (496 aa) fasta scores: E(): 4.7e-48, 29.71% id in 498 aa; putative transmembrane protein 3252214 3287079 BF9343_2704 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_212406.1 3250670 D 272559 CDS YP_212407.1 60682263 3287078 3252216..3253253 1 NC_003228.3 Similar to Streptococcus thermophilus Eps10O operon SWALL:Q8GP65 (EMBL:AF454500) (335 aa) fasta scores: E(): 6.3e-20, 29.61% id in 341 aa, and to Streptococcus agalactiae hypothetical protein gbs0344 SWALL:Q8E714 (EMBL:AL766844) (355 aa) fasta scores: E(): 1.7e-14, 25.29% id in 344 aa, and to Streptococcus agalactiae membrane protein, putative sag0357 SWALL:Q8E1J7 (EMBL:AE014208) (330 aa) fasta scores: E(): 3.7e-12, 24.09% id in 332 aa; putative transmembrane protein 3253253 3287078 BF9343_2705 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_212407.1 3252216 D 272559 CDS YP_212408.1 60682264 3287077 3253420..3254418 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative f420h2-dehydrogenase 40 kDa subunit BT0468 SWALL:AAO75575 (EMBL:AE016927) (388 aa) fasta scores: E(): 5.1e-41, 38.28% id in 303 aa, and to Bacteroides thetaiotaomicron putative f420h2-dehydrogenase BT0386 SWALL:AAO75493 (EMBL:AE016927) (397 aa) fasta scores: E(): 5.7e-34, 32.62% id in 328 aa, and to Bacteroides thetaiotaomicron f420h2:quinone oxidoreductase BT0041 SWALL:AAO75148 (EMBL:AE016926) (400 aa) fasta scores: E(): 1.6e-21, 37.19% id in 328 aa; hypothetical protein 3254418 3287077 BF9343_2706 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212408.1 3253420 D 272559 CDS YP_212409.1 60682265 3287074 3254415..3255509 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0042 SWALL:AAO75149 (EMBL:AE016926) (386 aa) fasta scores: E(): 1.4e-16, 30.22% id in 397 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0385 SWALL:AAO75492 (EMBL:AE016927) (386 aa) fasta scores: E(): 3.5e-14, 29.66% id in 391 aa, and to Rhizobium meliloti hypothetical protein rb0243 rb0243 or smb20253 SWALL:Q92WT6 (EMBL:AL603642) (301 aa) fasta scores: E(): 5.5e-08, 26.71% id in 262 aa; hypothetical protein 3255509 3287074 BF9343_2707 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212409.1 3254415 D 272559 CDS YP_212410.1 60682266 3285852 3255543..3256625 1 NC_003228.3 Similar to Streptococcus pneumoniae ss-1,4-galactosyltransferase Cps14J SWALL:O07340 (EMBL:X85787) (318 aa) fasta scores: E(): 1.5e-21, 31.93% id in 285 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT0050 SWALL:AAO75157 (EMBL:AE016926) (323 aa) fasta scores: E(): 2.2e-27, 34.55% id in 356 aa, and to Enterococcus faecalis glycosyl transferase, group 2 family protein Ef2170 SWALL:AAO81902 (EMBL:AE016953) (324 aa) fasta scores: E(): 8.2e-24, 33.76% id in 234 aa; putative glycosyltransferase protein 3256625 3285852 BF9343_2708 Bacteroides fragilis NCTC 9343 putative glycosyltransferase protein YP_212410.1 3255543 D 272559 CDS YP_212411.1 60682267 3287076 3256631..3257620 1 NC_003228.3 Similar to Lactobacillus delbrueckii glycosyltransferase EpsJ SWALL:Q9F0B8 (EMBL:AF267127) (327 aa) fasta scores: E(): 1.7e-21, 32.27% id in 282 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1648 SWALL:AAO76755 (EMBL:AE016932) (330 aa) fasta scores: E(): 3.1e-23, 32.21% id in 239 aa, and to Streptococcus pneumoniae galactosyl transferase paralog cps23fu or spr1223 SWALL:Q8DPD9 (EMBL:AE008494) (328 aa) fasta scores: E(): 1e-22, 31.05% id in 322 aa; putative glycosyltransferase 3257620 3287076 BF9343_2709 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_212411.1 3256631 D 272559 CDS YP_212412.1 60682268 3287075 3257630..3258619 1 NC_003228.3 Similar to Streptococcus pneumoniae ss-1,4-galactosyltransferase cps14J SWALL:O07340 (EMBL:X85787) (318 aa) fasta scores: E(): 8.8e-30, 36.27% id in 295 aa, and to Lactobacillus delbrueckii glycosyltransferase EpsJ SWALL:Q9F0B8 (EMBL:AF267127) (327 aa) fasta scores: E(): 6.2e-29, 39.5% id in 243 aa, and to Streptococcus suis capsular polysaccharide protein Cps1K (fragment) SWALL:Q9RG44 (EMBL:AF155804) (279 aa) fasta scores: E(): 1.5e-28, 36.32% id in 245 aa; putative glycosyltransferase 3258619 3287075 BF9343_2710 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_212412.1 3257630 D 272559 CDS YP_212413.1 60682269 3287086 3258633..3259184 1 NC_003228.3 Similar to Escherichia coli putative acetyltransferase WbqF SWALL:AAO39699 (EMBL:AY208937) (173 aa) fasta scores: E(): 3.8e-12, 35.22% id in 176 aa, and to Agrobacterium tumefaciens serine acetyltransferase cysE or atu1565 or agr_c_2882 SWALL:Q8UF35 (EMBL:AE009114) (209 aa) fasta scores: E(): 6.1e-21, 54.68% id in 128 aa, and to Bacteroides thetaiotaomicron serine acetyltransferase BT0393 SWALL:AAO75500 (EMBL:AE016927) (201 aa) fasta scores: E(): 3.3e-15, 36.46% id in 181 aa; putative acetyltransferase 3259184 3287086 BF9343_2711 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_212413.1 3258633 D 272559 CDS YP_212414.1 60682270 3287085 3259181..3260227 1 NC_003228.3 Very limited similarity to Halobacterium sp. LPS glycosyltransferase Lpg or vng0060G SWALL:Q9HSV4 (EMBL:AE004975) (333 aa) fasta scores: E(): 0.14, 24.06% id in 187 aa, and very limited similarity to Brucella melitensis glycosyl transferase bmeii0846 SWALL:Q8YBP9 (EMBL:AE009718) (407 aa) fasta scores: E(): 0.17, 22.83% id in 219 aa; possible glycosyltransferase 3260227 3287085 BF9343_2712 Bacteroides fragilis NCTC 9343 possible glycosyltransferase YP_212414.1 3259181 D 272559 CDS YP_212415.1 60682271 3287087 3260227..3261393 1 NC_003228.3 no significant database matches; putative transmembrane protein 3261393 3287087 BF9343_2713 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_212415.1 3260227 D 272559 CDS YP_212416.1 60682272 3287083 3261435..3262463 1 NC_003228.3 Similar to Streptococcus pneumoniae putative glycosyltransferase WciV SWALL:Q9AH91 (EMBL:AF316642) (354 aa) fasta scores: E(): 2.7e-40, 38.95% id in 344 aa, and to Lactobacillus delbrueckii glycosyltransferase capsular polysaccharide protein EpsJ SWALL:Q9F0B8 (EMBL:AF267127) (327 aa) fasta scores: E(): 1e-21, 30.11% id in 342 aa, and to Enterococcus faecalis glycosyl transferase, group 2 family protein ef2170 SWALL:AAO81902 (EMBL:AE016953) (324 aa) fasta scores: E(): 1.2e-20, 37.05% id in 251 aa; putative glycosyltransferase protein 3262463 3287083 BF9343_2714 Bacteroides fragilis NCTC 9343 putative glycosyltransferase protein YP_212416.1 3261435 D 272559 CDS YP_212417.1 60682273 3287081 3262468..3263490 1 NC_003228.3 Limited similarity to Clostridium tetani conserved membrane protein CTC00459 SWALL:AAO35093 (EMBL:AE015937) (348 aa) fasta scores: E(): 0.00057, 21.67% id in 346 aa, and to Lactobacillus plantarum integral membrane protein LP_3223 SWALL:CAD65367 (EMBL:AL935261) (361 aa) fasta scores: E(): 0.0087, 22.36% id in 152 aa; putative acyltransferase transmembrane protein 3263490 3287081 BF9343_2715 Bacteroides fragilis NCTC 9343 putative acyltransferase transmembrane protein YP_212417.1 3262468 D 272559 CDS YP_212418.1 60682274 3287092 3263503..3264066 1 NC_003228.3 Similar to Synechococcus sp. serine acetyltransferase NifP SWALL:O86162 (EMBL:AF001780) (245 aa) fasta scores: E(): 4.3e-10, 30.58% id in 170 aa, and to Bacteroides thetaiotaomicron serine O-acetyltransferase BT2875 SWALL:AAO77981 (EMBL:AE016937) (178 aa) fasta scores: E(): 1.8e-16, 41.24% id in 177 aa, and to Methanosarcina mazei serine O-acetyltransferase MM2939 SWALL:Q8PSY4 (EMBL:AE013546) (208 aa) fasta scores: E(): 3.4e-15, 39.36% id in 188 aa; putative acetyltransferase 3264066 3287092 BF9343_2716 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_212418.1 3263503 D 272559 CDS YP_212419.1 60682275 3287084 3264081..3265112 1 NC_003228.3 Similar to Vibrio cholerae putative polysaccharide biosynthesis protein vc0925 SWALL:Q9KTH7 (EMBL:AE004175) (365 aa) fasta scores: E(): 2.5e-31, 31.33% id in 351 aa, and to Streptococcus pneumoniae putative polysaccharide biosynthesis protein WciS SWALL:Q9AHA1 (EMBL:AF316641) (354 aa) fasta scores: E(): 1.4e-24, 27.47% id in 353 aa, and to Streptococcus pneumoniae galactosyl transferase cap8H SWALL:Q9X9A5 (EMBL:AJ239004) (354 aa) fasta scores: E(): 1.9e-24, 27.47% id in 353 aa; putative glycosyltransferase 3265112 3287084 BF9343_2717 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_212419.1 3264081 D 272559 CDS YP_212420.1 60682276 3287094 3265087..3266361 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative F420H2-dehydrogenase 40 kDa subunit BT0468 SWALL:AAO75575 (EMBL:AE016927) (388 aa) fasta scores: E(): 5.3e-27, 31.09% id in 328 aa, and to Bacteroides thetaiotaomicron putative F420H2-dehydrogenase BT0386 SWALL:AAO75493 (EMBL:AE016927) (397 aa) fasta scores: E(): 6.2e-27, 31.11% id in 331 aa, and to Bacteroides thetaiotaomicron F420H2:quinone oxidoreductase BT0041 SWALL:AAO75148 (EMBL:AE016926) (400 aa) fasta scores: E(): 1.6e-17, 30.06% id in 336 aa; putative 4Fe-4S binding protein 3266361 3287094 BF9343_2718 Bacteroides fragilis NCTC 9343 putative 4Fe-4S binding protein YP_212420.1 3265087 D 272559 CDS YP_212421.1 60682277 3287093 3266392..3267555 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0042 SWALL:AAO75149 (EMBL:AE016926) (386 aa) fasta scores: E(): 6.3e-18, 28.14% id in 405 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0603 SWALL:AAO75710 (EMBL:AE016928) (370 aa) fasta scores: E(): 9.4e-17, 28.22% id in 326 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0385 SWALL:AAO75492 (EMBL:AE016927) (386 aa) fasta scores: E(): 6.3e-12, 24.73% id in 380 aa; hypothetical protein 3267555 3287093 BF9343_2719 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212421.1 3266392 D 272559 CDS YP_212422.1 60682278 3287090 3267549..3268769 1 NC_003228.3 Similar to C-terminus of Vibrio vulnificus WcvE protein SWALL:AAM34820 (EMBL:AY097060) (377 aa) fasta scores: E(): 1.4e-09, 27.71% id in 184 aa, and to C-terminus of Methanosarcina mazei glycosyltransferase MM1138 SWALL:Q8PXS8 (EMBL:AE013343) (401 aa) fasta scores: E(): 6.2e-11, 28.57% id in 210 aa, and to Clostridium tetani glycosyl transferase CTC02266 SWALL:AAO36748 (EMBL:AE015943) (404 aa) fasta scores: E(): 3.9e-08, 24.91% id in 305 aa; putative glycosyltransferase protein 3268769 3287090 BF9343_2720 Bacteroides fragilis NCTC 9343 putative glycosyltransferase protein YP_212422.1 3267549 D 272559 CDS YP_212423.1 60682279 3287089 3268947..3269666 1 NC_003228.3 Similar to Streptococcus pneumoniae 28.2 kDa protein (putative UDP-N-acetyl-D-mannosamine transferase) CpsF or Cps19BF SWALL:Q54522 (EMBL:U09239) (247 aa) fasta scores: E(): 9.8e-21, 32.88% id in 222 aa, and to Streptococcus pneumoniae putative beta-1,4-N-acetyl-mannosaminyltransferase WchO SWALL:Q8KWP8 (EMBL:AF402095) (247 aa) fasta scores: E(): 2.5e-21, 32.42% id in 219 aa, and to Streptococcus pneumoniae putative N-acetyl-mannosamine transferase Cps19aF SWALL:Q9ZFT6 (EMBL:AF094575) (247 aa) fasta scores: E(): 3.3e-20, 31.05% id in 219 aa; putative acetyltransferase/glucosyltransferase 3269666 3287089 BF9343_2721 Bacteroides fragilis NCTC 9343 putative acetyltransferase/glucosyltransferase YP_212423.1 3268947 D 272559 CDS YP_212424.1 60682280 3286095 3269676..3270380 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0292 SWALL:AAO75399 (EMBL:AE016927) (249 aa) fasta scores: E(): 4.2e-47, 50.21% id in 235 aa; hypothetical protein 3270380 3286095 BF9343_2722 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212424.1 3269676 D 272559 CDS YP_212425.1 60682281 3287091 3270386..3271627 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0293 SWALL:AAO75400 (EMBL:AE016927) (410 aa) fasta scores: E(): 6.5e-57, 42.13% id in 413 aa; hypothetical protein 3271627 3287091 BF9343_2723 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212425.1 3270386 D 272559 CDS YP_212426.1 60682282 3287088 3271638..3272939 1 NC_003228.3 Low similarity to Bacteroides thetaiotaomicron hypothetical protein BT0294 SWALL:AAO75401 (EMBL:AE016927) (476 aa) fasta scores: E(): 1e-08, 27.8% id in 464 aa; hypothetical protein 3272939 3287088 BF9343_2724 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212426.1 3271638 D 272559 CDS YP_212427.1 60682283 3287101 3272979..3273554 1 NC_003228.3 no significant database matches; hypothetical protein 3273554 3287101 BF9343_2725 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212427.1 3272979 D 272559 CDS YP_212428.1 60682284 3287098 3273660..3274172 1 NC_003228.3 no significant database matches; putative transmembrane protein 3274172 3287098 BF9343_2726 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_212428.1 3273660 D 272559 CDS YP_212429.1 60682285 3287100 3274184..3275500 1 NC_003228.3 no significant database matches; hypothetical protein 3275500 3287100 BF9343_2727 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212429.1 3274184 D 272559 CDS YP_212430.1 60682286 3287099 3275508..3276605 1 NC_003228.3 no significant database matches; hypothetical protein 3276605 3287099 BF9343_2728 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212430.1 3275508 D 272559 CDS YP_212431.1 60682287 3287095 3276633..3277061 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0820 SWALL:AAO75927 (EMBL:AE016929) (139 aa) fasta scores: E(): 1.4e-38, 73.59% id in 125 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0039 SWALL:AAO75146 (EMBL:AE016926) (142 aa) fasta scores: E(): 1.6e-28, 63.11% id in 122 aa, and to Bacteriophage SP01 ORF 1 SWALL:Q38422 (EMBL:M82842) (134 aa) fasta scores: E(): 3.7e-08, 36.2% id in 116 aa; hypothetical protein 3277061 3287095 BF9343_2729 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212431.1 3276633 D 272559 CDS YP_212432.1 60682288 3287110 3277077..3278126 1 NC_003228.3 Similar to Salmonella enterica subsp. salamae GDP-mannose pyrophosphorylase ManC SWALL:Q9EXW9 (EMBL:AY012196) (482 aa) fasta scores: E(): 5.2e-38, 35.24% id in 349 aa, and to Bacteroides thetaiotaomicron BT0558 SWALL:AAO75665 (EMBL:AE016928) (350 aa) fasta scores: E(): 6e-119, 81.32% id in 348 aa, and to Bacteroides thetaiotaomicron putative mannose-1-phosphate guanylyltransferase BT2781 SWALL:AAO77887 (EMBL:AE016937) (360 aa) fasta scores: E(): 1.8e-60, 45.27% id in 349 aa; putative nucleotidyltransferase 3278126 3287110 BF9343_2730 Bacteroides fragilis NCTC 9343 putative nucleotidyltransferase YP_212432.1 3277077 D 272559 CDS YP_212433.1 60682289 3287106 complement(3278140..3278334) 1 NC_003228.3 no significant database matches; hypothetical protein 3278334 3287106 BF9343_2731 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212433.1 3278140 R 272559 CDS YP_212434.1 60682290 3287096 complement(3278554..3279789) 1 NC_003228.3 Similar to Haemophilus ducreyi oxaloacetate decarboxylase beta chain OadB SWALL:OADB_HAEDU (SWALL:Q9RF98) (435 aa) fasta scores: E(): 6.5e-39, 43.36% id in 422 aa, and to Salmonella typhi oxaloacetate decarboxylase beta chain OadB or STY3531 or T0056 SWALL:OADB_SALTI (SWALL:Q8Z9M6) (433 aa) fasta scores: E(): 9.8e-39, 44.39% id in 419 aa; putative Na+ transport decarboxylase membrane protein 3279789 3287096 BF9343_2732 Bacteroides fragilis NCTC 9343 putative Na+ transport decarboxylase membrane protein YP_212434.1 3278554 R 272559 CDS YP_212435.1 60682291 3285868 complement(3279789..3281624) 1 NC_003228.3 Similar to Methanococcus jannaschii pyruvate carboxylase subunit B PycB or MJ1231 SWALL:PYCB_METJA (SWALL:Q58628) (567 aa) fasta scores: E(): 6.8e-24, 30.06% id in 602 aa, and to Enterococcus faecalis carboxylase, putative EF3317 SWALL:AAO82982 (EMBL:AE016957) (465 aa) fasta scores: E(): 1.8e-22, 31.52% id in 498 aa; putative pyruvate carboxylase 3281624 3285868 BF9343_2733 Bacteroides fragilis NCTC 9343 putative pyruvate carboxylase YP_212435.1 3279789 R 272559 CDS YP_212436.1 60682292 3287109 complement(3281659..3281916) 1 NC_003228.3 Similar only to Bacteroides thetaiotaomicron conserved hypothetical protein BT1698 SWALL:AAO76805 (EMBL:AE016932) (86 aa) fasta scores: E(): 5e-21, 80.23% id in 86 aa; hypothetical protein 3281916 3287109 BF9343_2734 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212436.1 3281659 R 272559 CDS YP_212437.1 60682293 3287103 complement(3282090..3283727) 1 NC_003228.3 Similar to Clostridium tetani 2',3'-cyclic-nucleotide 2'-phosphodiesterase CTC01995 SWALL:Q892U3 (EMBL:AE015943) (593 aa) fasta scores: E(): 3.6e-27, 30.03% id in 516 aa, and to Salmonella typhimurium putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase STM4104 SWALL:Q8ZKN1 (EMBL:AE008891) (518 aa) fasta scores: E(): 2.6e-18, 27.01% id in 485 aa; putative nucleotidase 3283727 3287103 BF9343_2735 Bacteroides fragilis NCTC 9343 putative nucleotidase YP_212437.1 3282090 R 272559 CDS YP_212438.1 60682294 3287105 complement(3284636..3285289) 1 NC_003228.3 Similar only to Bacteroides fragilis hypothetical 20.5 kDa protein SWALL:Q8RM78 (EMBL:AY053505) (176 aa) fasta scores: E(): 4.6e-15, 35.13% id in 185 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0639 SWALL:AAO75746 (EMBL:AE016928) (208 aa) fasta scores: E(): 3.9e-09, 29.46% id in 207 aa; hypothetical protein 3285289 3287105 BF9343_2736 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212438.1 3284636 R 272559 CDS YP_212439.1 60682295 3287104 3285812..3286276 1 NC_003228.3 Similar only to Bacteroides thetaiotaomicron hypothetical protein BT1331 SWALL:AAO76438 (EMBL:AE016931) (159 aa) fasta scores: E(): 8.7e-53, 92.81% id in 153 aa; hypothetical protein 3286276 3287104 BF9343_2737 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212439.1 3285812 D 272559 CDS YP_212440.1 60682296 3286997 3286423..3287091 1 NC_003228.3 Similar to Clostridium tetani proline synthetase associated protein CTC01624 SWALL:AAO36167 (EMBL:AE015941) (225 aa) fasta scores: E(): 1.7e-30, 42.85% id in 224 aa, and to Bacillus subtilis hypothetical upf0001 protein YlmE or BSU15380 SWALL:YLME_BACSU (SWALL:O31727) (230 aa) fasta scores: E(): 2.2e-21, 37.11% id in 229 aa; putative racemase 3287091 3286997 BF9343_2738 Bacteroides fragilis NCTC 9343 putative racemase YP_212440.1 3286423 D 272559 CDS YP_212441.1 60682297 3287296 3287147..3288121 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 dihydroorotate dehydrogenase family protein PG2055 SWALL:AAQ67018 (EMBL:AE017179) (326 aa) fasta scores: E(): 1e-57, 49.38% id in 324 aa, and to Bacillus subtilis dihydroorotate dehydrogenase, catalytic subunit PyrD or PyrDA or PyrDI or BSU15540 SWALL:PYRD_BACSU (SWALL:P25996) (311 aa) fasta scores: E(): 5e-05, 23.12% id in 307 aa; putative dihydroorotate dehydrogenase 3288121 3287296 BF9343_2739 Bacteroides fragilis NCTC 9343 putative dihydroorotate dehydrogenase YP_212441.1 3287147 D 272559 CDS YP_212442.1 60682298 3287102 complement(3288235..3289029) 1 NC_003228.3 Similar to Bacteriophage phi CTX ORF11 SWALL:Q9ZXL6 (EMBL:AB008550) (268 aa) fasta scores: E(): 1.9e-28, 39.16% id in 263 aa, and to Burkholderia cepacia phage BCEP781 endolysin SWALL:Q8HAN2 (EMBL:AF543311) (255 aa) fasta scores: E(): 1.6e-17, 32.78% id in 244 aa; putative phage-related protein 3289029 3287102 BF9343_2740 Bacteroides fragilis NCTC 9343 putative phage-related protein YP_212442.1 3288235 R 272559 CDS YP_212443.1 60682299 3286994 complement(3289051..3289389) 1 NC_003228.3 hypothetical protein 3289389 3286994 BF9343_2741 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212443.1 3289051 R 272559 CDS YP_212444.1 60682300 3286995 complement(3289396..3289902) 1 NC_003228.3 hypothetical protein 3289902 3286995 BF9343_2742 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212444.1 3289396 R 272559 CDS YP_212445.1 60682301 3287003 complement(3289914..3290150) 1 NC_003228.3 hypothetical protein 3290150 3287003 BF9343_2743 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212445.1 3289914 R 272559 CDS YP_212446.1 60682302 3286996 complement(3290147..3290761) 1 NC_003228.3 hypothetical protein 3290761 3286996 BF9343_2744 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212446.1 3290147 R 272559 CDS YP_212447.1 60682303 3289419 complement(3290778..3291590) 1 NC_003228.3 hypothetical protein 3291590 3289419 BF9343_2745 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212447.1 3290778 R 272559 CDS YP_212448.1 60682304 3287111 complement(3291619..3292491) 1 NC_003228.3 hypothetical protein 3292491 3287111 BF9343_2746 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212448.1 3291619 R 272559 CDS YP_212449.1 60682305 3287001 complement(3293067..3293411) 1 NC_003228.3 hypothetical protein 3293411 3287001 BF9343_2748 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212449.1 3293067 R 272559 CDS YP_212450.1 60682306 3286998 complement(3293642..3294535) 1 NC_003228.3 hypothetical protein 3294535 3286998 BF9343_2749 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212450.1 3293642 R 272559 CDS YP_212451.1 60682307 3287494 complement(3294540..3296969) 1 NC_003228.3 Similar to parts of Brevibacillus parabrevis tyrocidine synthetase I TycA SWALL:TYCA_BREPA (SWALL:P09095) (1088 aa) fasta scores: E(): 7.4e-44, 28.96% id in 656 aa, and to parts of Bacillus licheniformis bacitracin synthetase 3 BacC SWALL:BACC_BACLI (SWALL:O68008) (6359 aa) fasta scores: E(): 6.2e-41, 30.94% id in 627 aa; putative NRPS-secondary metabolite biosyntehsis-related protein 3296969 3287494 BF9343_2750 Bacteroides fragilis NCTC 9343 putative NRPS-secondary metabolite biosyntehsis-related protein YP_212451.1 3294540 R 272559 CDS YP_212452.1 60682308 3287000 complement(3296982..3299348) 1 NC_003228.3 Similar to Vibrio cholerae ferrichrome outer membrane receptor FhuA SWALL:Q9RF13 (EMBL:AF203702) (700 aa) fasta scores: E(): 2.6e-09, 23.69% id in 726 aa, and to Yersinia enterocolitica ferrioxamine receptor precursor FoxA SWALL:FOXA_YEREN (SWALL:Q01674) (710 aa) fasta scores: E(): 5.8e-08, 23.42% id in 713 aa; putative iron-transport related outer membrane protein 3299348 3287000 BF9343_2751 Bacteroides fragilis NCTC 9343 putative iron-transport related outer membrane protein YP_212452.1 3296982 R 272559 CDS YP_212453.1 60682309 3286999 complement(3299345..3300187) 1 NC_003228.3 Similar to the C-terminal region of Anabaena sp. serine/threonine kinase with two-component sensor domain ALL2282 SWALL:Q8YUQ3 (EMBL:AP003589) (1783 aa) fasta scores: E(): 5.6e-33, 39.35% id in 277 aa, and of Anabaena sp. two-component sensor histidine kinase ALR4716 SWALL:Q8YN54 (EMBL:AP003597) (468 aa) fasta scores: E(): 7.4e-17, 31.36% id in 271 aa; putative two-component system, histidine kinase 3300187 3286999 BF9343_2752 Bacteroides fragilis NCTC 9343 putative two-component system, histidine kinase YP_212453.1 3299345 R 272559 CDS YP_212454.1 60682310 3287011 complement(3300204..3303041) 1 NC_003228.3 C-terminal region similar to Bradyrhizobium japonicum two-component hybrid sensor and regulator BLR2862 SWALL:Q89RB0 (EMBL:AP005945) (860 aa) fasta scores: E(): 1.4e-23, 32.32% id in 297 aa, and to Anabaena sp. serine/threonine kinase with two-component sensor domain ALL2282 SWALL:Q8YUQ3 (EMBL:AP003589) (1783 aa) fasta scores: E(): 1.8e-18, 30.49% id in 282 aa; putative two-component system, histidine kinase 3303041 3287011 BF9343_2753 Bacteroides fragilis NCTC 9343 putative two-component system, histidine kinase YP_212454.1 3300204 R 272559 CDS YP_212455.1 60682311 3287012 complement(3303038..3304639) 1 NC_003228.3 hypothetical protein 3304639 3287012 BF9343_2754 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212455.1 3303038 R 272559 CDS YP_212456.1 60682312 3285908 complement(3304636..3305064) 1 NC_003228.3 Similar to Synechocystis sp. hypothetical protein SLR1861 SWALL:P73611 (EMBL:D90908) (143 aa) fasta scores: E(): 5.5e-07, 31.53% id in 130 aa, and to Chlamydia trachomatis sigma regulatory factor-histidine kinase RsbW or CT549 SWALL:O84553 (EMBL:AE001325) (146 aa) fasta scores: E(): 1.9e-06, 35% id in 140 aa; putative anti sigma factor 3305064 3285908 BF9343_2755 Bacteroides fragilis NCTC 9343 putative anti sigma factor YP_212456.1 3304636 R 272559 CDS YP_212457.1 60682313 3287009 complement(3305079..3305384) 1 NC_003228.3 Similar to Synechocystis sp. hypothetical protein SLR1856 SWALL:P73607 (EMBL:D90908) (109 aa) fasta scores: E(): 9e-08, 41.17% id in 85 aa, and to Treponema pallidum anti-sigma F factor antagonist TP0220 SWALL:O83249 (EMBL:AE001203) (108 aa) fasta scores: E(): 9.7e-06, 32.22% id in 90 aa; putative anti-anti sigma factor 3305384 3287009 BF9343_2756 Bacteroides fragilis NCTC 9343 putative anti-anti sigma factor YP_212457.1 3305079 R 272559 CDS YP_212458.1 60682314 3287008 complement(3305403..3306572) 1 NC_003228.3 C-terminal region similar to C-terminal region of Fusobacterium nucleatum sigma factor SigB regulation protein RsbU FN1091 SWALL:Q8REK9 (EMBL:AE010614) (447 aa) fasta scores: E(): 8.2e-25, 36.25% id in 251 aa, and full length similar to Anabaena sp. two-component response regulator ALR2280 SWALL:Q8YUQ5 (EMBL:AP003588) (421 aa) fasta scores: E(): 1.2e-20, 24.75% id in 400 aa; putative regulatory protein 3306572 3287008 BF9343_2757 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_212458.1 3305403 R 272559 CDS YP_212459.1 60682315 3287019 3306920..3307543 1 NC_003228.3 hypothetical protein 3307543 3287019 BF9343_2758 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212459.1 3306920 D 272559 CDS YP_212460.1 60682316 3287010 3307579..3307914 1 NC_003228.3 hypothetical protein 3307914 3287010 BF9343_2759 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212460.1 3307579 D 272559 CDS YP_212461.1 60682317 3287007 3307929..3308429 1 NC_003228.3 hypothetical protein 3308429 3287007 BF9343_2760 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212461.1 3307929 D 272559 CDS YP_212462.1 60682318 3287004 complement(3308520..3310424) 1 NC_003228.3 Similar to Clostridium perfringens capsular polysaccharide biosynthesis protein CPE0463 SWALL:Q8XN75 (EMBL:AP003186) (637 aa) fasta scores: E(): 3.8e-71, 38.29% id in 611 aa, and to Staphylococcus aureus capsular polysaccharide biosynthesis protein CapD SWALL:CAPD_STAAU (SWALL:P39853) (599 aa) fasta scores: E(): 4.1e-65, 37.74% id in 612 aa; putative capsular polysaccharide biosynthesis protein 3310424 3287004 BF9343_2761 Bacteroides fragilis NCTC 9343 putative capsular polysaccharide biosynthesis protein YP_212462.1 3308520 R 272559 CDS YP_212463.1 60682319 3287017 complement(3310586..3311911) 1 NC_003228.3 Similar to Synechococcus sp. PhoH SEA0005 SWALL:Q935Z1 (EMBL:U30252) (442 aa) fasta scores: E(): 4.3e-53, 42.82% id in 453 aa, and to Bacillus halodurans hypothetical protein BH2629 SWALL:Q9K9L6 (EMBL:AP001516) (442 aa) fasta scores: E(): 2.1e-51, 40.74% id in 454 aa; conserved hypothetical PhoH-like protein 3311911 3287017 BF9343_2762 Bacteroides fragilis NCTC 9343 conserved hypothetical PhoH-like protein YP_212463.1 3310586 R 272559 CDS YP_212464.1 60682320 3287016 3312041..3313417 1 NC_003228.3 Similar to Thermotoga maritima folylpolyglutamate synthase TM0166 SWALL:Q9WY13 (EMBL:AE001701) (430 aa) fasta scores: E(): 1.4e-29, 33.92% id in 454 aa, and to Bacillus subtilis folylpolyglutamate synthase FolC or BSU28080 SWALL:FOLC_BACSU (SWALL:Q05865) (430 aa) fasta scores: E(): 8.6e-27, 32.02% id in 434 aa; putative folylpolyglutamate synthase 3313417 3287016 BF9343_2763 Bacteroides fragilis NCTC 9343 putative folylpolyglutamate synthase YP_212464.1 3312041 D 272559 CDS YP_212465.1 60682321 3287013 complement(3313385..3313759) 1 NC_003228.3 Similar to Treponema maltophilum translation initiation inhibitor protein SWALL:Q8GBS4 (EMBL:AJ304448) (129 aa) fasta scores: E(): 7e-22, 60.48% id in 124 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein YjgF or B4243 or C5342 or SF4247 or S4509 SWALL:YJGF_ECOLI (SWALL:P39330) (127 aa) fasta scores: E(): 6.1e-20, 52.8% id in 125 aa; conserved hypothetical translation inhibitor protein 3313759 3287013 BF9343_2764 Bacteroides fragilis NCTC 9343 conserved hypothetical translation inhibitor protein YP_212465.1 3313385 R 272559 CDS YP_212466.1 60682322 3287018 complement(3314056..3315762) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron tetratricopeptide repeat family protein BT1359 SWALL:AAO76466 (EMBL:AE016931) (568 aa) fasta scores: E(): 5.1e-147, 68.89% id in 569 aa; hypothetical protein 3315762 3287018 BF9343_2765 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212466.1 3314056 R 272559 CDS YP_212467.1 60682323 3287015 complement(3315783..3316523) 1 NC_003228.3 Similar to Oceanobacillus iheyensis tRNA:rRNA methyltransferase OB0101 SWALL:Q8CXP3 (EMBL:AP004593) (248 aa) fasta scores: E(): 1.9e-28, 37.08% id in 240 aa, and to Bacillus subtilis hypothetical tRNA/rRNA methyltransferase YacO or BSU00960 SWALL:YACO_BACSU (SWALL:Q06753) (249 aa) fasta scores: E(): 6.9e-24, 30.73% id in 244 aa; putative tRNA:rRNA methyltransferase 3316523 3287015 BF9343_2766 Bacteroides fragilis NCTC 9343 putative tRNA:rRNA methyltransferase YP_212467.1 3315783 R 272559 CDS YP_212468.1 60682324 3289305 complement(3316584..3318269) 1 NC_003228.3 Similar to Escherichia coli DNA repair protein RecN or RadB or B2616 SWALL:RECN_ECOLI (SWALL:P05824) (553 aa) fasta scores: E(): 4.3e-47, 32.32% id in 560 aa, and to Pseudomonas aeruginosa DNA repair protein RecN or PA4763 SWALL:Q9HV41 (EMBL:AE004890) (558 aa) fasta scores: E(): 4.9e-58, 37.59% id in 556 aa; DNA repair protein 3318269 recN 3289305 recN Bacteroides fragilis NCTC 9343 DNA repair protein YP_212468.1 3316584 R 272559 CDS YP_212469.1 60682325 3285355 complement(3318273..3319466) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 DNA/pantothenate metabolism flavoprotein Dfp or B3639 or C4463 SWALL:DFP_ECOLI (SWALL:P24285) (406 aa) fasta scores: E(): 2.9e-50, 40.65% id in 396 aa, and to Oceanobacillus iheyensis pantothenate metabolism OB1504 SWALL:Q8CXH5 (EMBL:AP004598) (402 aa) fasta scores: E(): 1.3e-61, 44.22% id in 398 aa; DNA/pantothenate metabolism flavoprotein 3319466 dfp 3285355 dfp Bacteroides fragilis NCTC 9343 DNA/pantothenate metabolism flavoprotein YP_212469.1 3318273 R 272559 CDS YP_212470.1 60682326 3287014 complement(3319469..3320242) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 exonuclease PG1852 SWALL:AAQ66841 (EMBL:AE017178) (259 aa) fasta scores: E(): 3.3e-66, 66.93% id in 251 aa, and to Chlamydia trachomatis DNA pol III epsilon chain DnaQ_1 or CT261 SWALL:O84263 (EMBL:AE001299) (232 aa) fasta scores: E(): 4.9e-11, 31.79% id in 239 aa; putative DNA polymerase III epsilon chain 3320242 3287014 BF9343_2769 Bacteroides fragilis NCTC 9343 putative DNA polymerase III epsilon chain YP_212470.1 3319469 R 272559 CDS YP_212471.1 60682327 3287024 complement(3320373..3321497) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 DNA polymerase III, beta subunit DnaN or PG1853 SWALL:AAQ66842 (EMBL:AE017178) (377 aa) fasta scores: E(): 1.4e-53, 42.4% id in 375 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DNA polymerase III, beta chain DnaN or B3701 or C4623 or Z5192 or ECS4636 SWALL:DP3B_ECOLI (SWALL:P00583) (366 aa) fasta scores: E(): 2.2e-24, 27.27% id in 374 aa; putative DNA polymerase III beta chain 3321497 3287024 BF9343_2770 Bacteroides fragilis NCTC 9343 putative DNA polymerase III beta chain YP_212471.1 3320373 R 272559 CDS YP_212472.1 60682328 3287026 3321650..3322024 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1365 SWALL:AAO76472 (EMBL:AE016931) (124 aa) fasta scores: E(): 1.7e-39, 88.71% id in 124 aa; hypothetical protein 3322024 3287026 BF9343_2771 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212472.1 3321650 D 272559 CDS YP_212473.1 60682329 3287025 complement(3322102..3323739) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1366 SWALL:AAO76473 (EMBL:AE016931) (525 aa) fasta scores: E(): 8.7e-59, 54.63% id in 540 aa; putative conserved exported protein 3323739 3287025 BF9343_2772 Bacteroides fragilis NCTC 9343 putative conserved exported protein YP_212473.1 3322102 R 272559 CDS YP_212474.1 60682330 3287022 complement(3323832..3324590) 1 NC_003228.3 Similar to Borrelia burgdorferi PhnP protein BB0533 SWALL:O51483 (EMBL:AE001155) (253 aa) fasta scores: E(): 1.5e-32, 35.22% id in 247 aa, and to Escherichia coli PhnP protein B4092 SWALL:PHNP_ECOLI (SWALL:P16692) (252 aa) fasta scores: E(): 2.7e-08, 27.09% id in 262 aa; putative hydrolase 3324590 3287022 BF9343_2773 Bacteroides fragilis NCTC 9343 putative hydrolase YP_212474.1 3323832 R 272559 CDS YP_212475.1 60682331 3289258 complement(3324651..3325649) 1 NC_003228.3 Similar to Escherichia coli UDP-N-acetylenolpyruvoylglucosamine reductase MurB or B3972 SWALL:MURB_ECOLI (SWALL:P08373) (342 aa) fasta scores: E(): 6.3e-43, 43.07% id in 332 aa, and to Pseudomonas aeruginosa UDP-N-acetylenolpyruvoylglucosamine reductase MurB or PA2977 SWALL:MURB_PSEAE (SWALL:Q9HZM7) (339 aa) fasta scores: E(): 3.3e-50, 44.34% id in 336 aa; UDP-N-acetylenolpyruvoylglucosamine reductase 3325649 murB 3289258 murB Bacteroides fragilis NCTC 9343 UDP-N-acetylenolpyruvoylglucosamine reductase YP_212475.1 3324651 R 272559 CDS YP_212476.1 60682332 3287021 complement(3325669..3326523) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1369 SWALL:Q8A805 (EMBL:AE016931) (282 aa) fasta scores: E(): 7.5e-92, 77.46% id in 284 aa; hypothetical protein 3326523 3287021 BF9343_2775 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212476.1 3325669 R 272559 CDS YP_212477.1 60682333 3287023 complement(3326619..3327572) 1 NC_003228.3 Similar to Oceanobacillus iheyensis UDP-glucose 4-epimerase OB3053 SWALL:Q8EM08 (EMBL:AP004603) (313 aa) fasta scores: E(): 4e-68, 57.91% id in 316 aa, and to Staphylococcus epidermidis UDP-glucose 4-epimerase related protein se0317 SWALL:Q8CQ79 (EMBL:AE016745) (318 aa) fasta scores: E(): 9.8e-62, 53.31% id in 317 aa; putative epimerase 3327572 3287023 BF9343_2776 Bacteroides fragilis NCTC 9343 putative epimerase YP_212477.1 3326619 R 272559 CDS YP_212478.1 60682334 3289183 3327709..3328896 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 2-amino-3-ketobutyrate coenzyme A ligase Kbl or B3617 or Z5044 or ECS4495 or SF3657 or S4110 SWALL:KBL_ECOLI (SWALL:P07912) (398 aa) fasta scores: E(): 3.9e-88, 59.44% id in 397 aa, and to Xanthomonas axonopodis 2-amino-3-ketobutyrate CoA ligase Kbl or XAC1016 SWALL:Q8PNN8 (EMBL:AE011731) (402 aa) fasta scores: E(): 2.7e-91, 60.66% id in 394 aa; 2-amino-3-ketobutyrate coenzyme A ligase 3328896 kbl 3289183 kbl Bacteroides fragilis NCTC 9343 2-amino-3-ketobutyrate coenzyme A ligase YP_212478.1 3327709 D 272559 CDS YP_212479.1 60682335 3287032 3328946..3329350 1 NC_003228.3 Similar to Shewanella oneidensis hypothetical protein SO1320 SWALL:Q8EHA9 (EMBL:AE015576) (129 aa) fasta scores: E(): 1.1e-14, 48% id in 125 aa, and to Leptospira interrogans hypothetical protein LA0989 SWALL:Q8F7F6 (EMBL:AE011283) (154 aa) fasta scores: E(): 8.2e-13, 41.4% id in 128 aa; hypothetical protein 3329350 3287032 BF9343_2778 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212479.1 3328946 D 272559 CDS YP_212480.1 60682336 3287033 complement(3329490..3330383) 1 NC_003228.3 putative lipoprotein 3330383 3287033 BF9343_2779 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212480.1 3329490 R 272559 CDS YP_212481.1 60682337 3287029 complement(3330519..3331565) 1 NC_003228.3 hypothetical protein 3331565 3287029 BF9343_2780 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212481.1 3330519 R 272559 CDS YP_212482.1 60682338 3287020 complement(3331579..3333702) 1 NC_003228.3 putative lipoprotein 3333702 3287020 BF9343_2781 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212482.1 3331579 R 272559 CDS YP_212483.1 60682339 3287031 complement(3333737..3334765) 1 NC_003228.3 putative lipoprotein 3334765 3287031 BF9343_2782 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212483.1 3333737 R 272559 CDS YP_212484.1 60682340 3287030 complement(3334911..3336464) 1 NC_003228.3 hypothetical protein 3336464 3287030 BF9343_2783 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212484.1 3334911 R 272559 CDS YP_212485.1 60682341 3286936 complement(3336451..3337503) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2657 SWALL:AAO77764 (EMBL:AE016936) (338 aa) fasta scores: E(): 1.6e-16, 26.97% id in 330 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1062 SWALL:AAO76169 (EMBL:AE016930) (317 aa) fasta scores: E(): 7.9e-07, 28.31% id in 279 aa; putative lipoprotein 3337503 3286936 BF9343_2784 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212485.1 3336451 R 272559 CDS YP_212486.1 60682342 3287027 complement(3337683..3338138) 1 NC_003228.3 hypothetical protein 3338138 3287027 BF9343_2785 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212486.1 3337683 R 272559 CDS YP_212487.1 60682343 3287028 complement(3338104..3339345) 1 NC_003228.3 putative lipoprotein 3339345 3287028 BF9343_2786 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212487.1 3338104 R 272559 CDS YP_212488.1 60682344 3286934 complement(3339371..3340774) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1452 SWALL:AAO76559 (EMBL:AE016931) (484 aa) fasta scores: E(): 1.4e-10, 26.12% id in 467 aa, and to Porphyromonas gingivalis 60kda protein SWALL:O07074 (EMBL:AB004560) (490 aa) fasta scores: E(): 1.6e-08, 26.73% id in 303 aa; hypothetical protein 3340774 3286934 BF9343_2787 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212488.1 3339371 R 272559 CDS YP_212489.1 60682345 3286933 complement(3340783..3341340) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2660 SWALL:AAO77767 (EMBL:AE016937) (196 aa) fasta scores: E(): 2e-31, 39.15% id in 189 aa; hypothetical protein 3341340 3286933 BF9343_2788 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212489.1 3340783 R 272559 CDS YP_212490.1 60682346 3286935 complement(3341377..3341751) 1 NC_003228.3 hypothetical protein 3341751 3286935 BF9343_2789 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212490.1 3341377 R 272559 CDS YP_212491.1 60682347 3285609 complement(3342142..3343056) 1 NC_003228.3 Majority of significant database matches similar to Bacteroides thetaiotaomicron integrase BT1503 SWALL:Q8A7M1 (EMBL:AE016932) (336 aa) fasta scores: E(): 1.2e-43, 44.37% id in 302 aa, and to Bacteroides thetaiotaomicron integrase protein BT1793 SWALL:Q8A6T3 (EMBL:AE016933) (315 aa) fasta scores: E(): 4e-40, 42.71% id in 295 aa; tyrosine site-specific recombinase 3343056 tsr25 3285609 tsr25 Bacteroides fragilis NCTC 9343 tyrosine site-specific recombinase YP_212491.1 3342142 R 272559 CDS YP_212492.1 60682348 3286943 3343297..3343671 1 NC_003228.3 hypothetical protein 3343671 3286943 BF9343_2791 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212492.1 3343297 D 272559 CDS YP_212493.1 60682349 3287034 3343731..3343892 1 NC_003228.3 hypothetical protein 3343892 3287034 BF9343_2792 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212493.1 3343731 D 272559 CDS YP_212494.1 60682350 3286940 complement(3343900..3345477) 1 NC_003228.3 Similar to Azotobacter chroococcum mcd 1 hypothetical protein in vnfD 5'region SWALL:YVNF_AZOCH (SWALL:P24423) (516 aa) fasta scores: E(): 6.5e-36, 35.44% id in 522 aa, and to Clostridium tetani conserved protein CTC00457 SWALL:AAO35091 (EMBL:AE015937) (568 aa) fasta scores: E(): 1e-05, 25.09% id in 558 aa; hypothetical protein 3345477 3286940 BF9343_2793 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212494.1 3343900 R 272559 CDS YP_212495.1 60682351 3289377 complement(3345586..3345747) 1 NC_003228.3 hypothetical protein 3345747 3289377 BF9343_2794 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212495.1 3345586 R 272559 CDS YP_212496.1 60682352 3286941 3345844..3346164 1 NC_003228.3 hypothetical protein 3346164 3286941 BF9343_2795 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212496.1 3345844 D 272559 CDS YP_212497.1 60682353 3286937 complement(3346448..3347347) 1 NC_003228.3 hypothetical protein 3347347 3286937 BF9343_2796 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212497.1 3346448 R 272559 CDS YP_212498.1 60682354 3288966 complement(3347521..3348000) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis ferritin A FtnA SWALL:Q9AEU4 (EMBL:AY028371) (159 aa) fasta scores: E(): 6e-61, 100% id in 159 aa, and similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ferritin 1 FtnA or Ftn or RsgA or GEN-165 or B1905 or C2321 or Z2960 or ECS2613 or SF1951 or S2044 SWALL:FTNA_ECOLI (SWALL:P23887) (165 aa) fasta scores: E(): 5.8e-13, 30.38% id in 158 aa; ferritin A 3348000 ftnA 3288966 ftnA Bacteroides fragilis NCTC 9343 ferritin A YP_212498.1 3347521 R 272559 CDS YP_212499.1 60682355 3286942 complement(3348138..3349301) 1 NC_003228.3 Similar to Brucella melitensis diaminopimelate decarboxylase BMEI0084 SWALL:Q8YJJ9 (EMBL:AE009452) (421 aa) fasta scores: E(): 3.6e-50, 43.78% id in 370 aa, and to Neisseria meningitidis diaminopimelate decarboxylase LysA or NMB1976 SWALL:DCDA_NEIMB (SWALL:Q9JXM2) (414 aa) fasta scores: E(): 1.6e-48, 40.97% id in 371 aa; putative diaminopimelate decarboxylase 3349301 3286942 BF9343_2798 Bacteroides fragilis NCTC 9343 putative diaminopimelate decarboxylase YP_212499.1 3348138 R 272559 CDS YP_212500.1 60682356 3286939 complement(3349458..3350777) 1 NC_003228.3 Similar to Vibrio parahaemolyticus aspartokinase III, lysine-sensitive VP2715 SWALL:BAC60979 (EMBL:AP005082) (450 aa) fasta scores: E(): 5.2e-43, 34.22% id in 447 aa, and to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk or B4024 SWALL:AK3_ECOLI (SWALL:P08660) (449 aa) fasta scores: E(): 7.6e-32, 33.4% id in 449 aa; putative aspartokinase III 3350777 3286939 BF9343_2799 Bacteroides fragilis NCTC 9343 putative aspartokinase III YP_212500.1 3349458 R 272559 CDS YP_212501.1 60682357 3288969 complement(3350809..3351507) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cell division ATP-binding protein FtsE or B3463 or C4256 or Z4837 or ECS4312 or SF3481 or S4282 SWALL:FTSE_ECOLI (SWALL:P10115) (222 aa) fasta scores: E(): 4.7e-22, 40.54% id in 185 aa, and to Lactococcus lactis cell-division ATP-binding protein FtsE or LL0972 SWALL:Q9CGX0 (EMBL:AE006331) (230 aa) fasta scores: E(): 8.5e-29, 43.96% id in 207 aa; Cell division ATP-binding protein 3351507 ftsE 3288969 ftsE Bacteroides fragilis NCTC 9343 Cell division ATP-binding protein YP_212501.1 3350809 R 272559 CDS YP_212502.1 60682358 3289225 complement(3351492..3352103) 1 NC_003228.3 Similar to Escherichia coli histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase] HisI or HisIE or B2026 SWALL:HIS2_ECOLI (SWALL:P06989) (203 aa) fasta scores: E(): 1.4e-36, 53.33% id in 195 aa, and to Vibrio vulnificus phosphoribosyl-ATP pyrophosphohydrolase VV12913 SWALL:Q8D8Q6 (EMBL:AE016806) (211 aa) fasta scores: E(): 6.3e-38, 53.06% id in 196 aa; histidine biosynthesis bifunctional protein 3352103 hisI 3289225 hisI Bacteroides fragilis NCTC 9343 histidine biosynthesis bifunctional protein YP_212502.1 3351492 R 272559 CDS YP_212503.1 60682359 3287920 complement(3352292..3353044) 1 NC_003228.3 Similar to Bacillus subtilis imidazole glycerol phosphate synthase subunit HisF or BSU34870 SWALL:HIS6_BACSU (SWALL:O34727) (252 aa) fasta scores: E(): 5.8e-50, 55.73% id in 253 aa, and to Thermoanaerobacter tengcongensis imidazole glycerol phosphate synthase subunit HisF or TTE2133 SWALL:HIS6_THETN (SWALL:Q8R885) (253 aa) fasta scores: E(): 9.8e-52, 57.93% id in 252 aa; imidazole glycerol phosphate synthase subunit 3353044 hisF 3287920 hisF Bacteroides fragilis NCTC 9343 imidazole glycerol phosphate synthase subunit YP_212503.1 3352292 R 272559 CDS YP_212504.1 60682360 3287919 complement(3353146..3353865) 1 NC_003228.3 Similar to Escherichia coli 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA or B2024 SWALL:HIS4_ECOLI (SWALL:P10371) (245 aa) fasta scores: E(): 7.1e-30, 37.71% id in 236 aa, and to Pasteurella multocida 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA or PM1203 SWALL:HIS4_PASMU (SWALL:Q9CLM1) (249 aa) fasta scores: E(): 7.1e-32, 39.66% id in 237 aa; imidazole-4-carboxamide isomerase 3353865 hisA 3287919 hisA Bacteroides fragilis NCTC 9343 imidazole-4-carboxamide isomerase YP_212504.1 3353146 R 272559 CDS YP_212505.1 60682361 3289251 complement(3353905..3354495) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 imidazole glycerol phosphate synthase subunit HisH or B2023 or C2550 SWALL:HIS5_ECOLI (SWALL:P10375) (196 aa) fasta scores: E(): 4.1e-30, 46.46% id in 198 aa, and to Vibrio parahaemolyticus imidazole glycerol phosphate synthase subunit HisH or VP1141 SWALL:BAC59404 (EMBL:AP005077) (204 aa) fasta scores: E(): 3.5e-31, 44.05% id in 202 aa; imidazole glycerol phosphate synthase subunit 3354495 hisH 3289251 hisH Bacteroides fragilis NCTC 9343 imidazole glycerol phosphate synthase subunit YP_212505.1 3353905 R 272559 CDS YP_212506.1 60682362 3286938 3355211..3355468 1 NC_003228.3 hypothetical protein 3355468 3286938 BF9343_2805 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212506.1 3355211 D 272559 CDS YP_212507.1 60682363 3286948 complement(3355522..3357597) 1 NC_003228.3 Similar to Methanosarcina acetivorans hypothetical protein MA2417 SWALL:Q8TN76 (EMBL:AE010933) (702 aa) fasta scores: E(): 1.2e-117, 52.14% id in 698 aa, and to Helicobacter pylori J99 putative JHP0462 SWALL:Q9ZLW4 (EMBL:AE001480) (706 aa) fasta scores: E(): 1.5e-83, 40.66% id in 718 aa; hypothetical protein 3357597 3286948 BF9343_2806 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212507.1 3355522 R 272559 CDS YP_212508.1 60682364 3286947 3357728..3357934 1 NC_003228.3 hypothetical protein 3357934 3286947 BF9343_2807 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212508.1 3357728 D 272559 CDS YP_212509.1 60682365 3286944 complement(3358551..3358958) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1384 SWALL:AAO76491 (EMBL:AE016931) (139 aa) fasta scores: E(): 9.3e-08, 28.9% id in 128 aa, and to Deinococcus radiodurans general stress protein 26, putative DR1146 SWALL:Q9RV83 (EMBL:AE001964) (193 aa) fasta scores: E(): 1.7e-07, 28.68% id in 122 aa; hypothetical protein 3358958 3286944 BF9343_2808 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212509.1 3358551 R 272559 CDS YP_212510.1 60682366 3286949 complement(3359169..3359990) 1 NC_003228.3 Similar to Rhizobium loti transcription regulator MLL7889 SWALL:Q984Q6 (EMBL:AP003012) (256 aa) fasta scores: E(): 1.9e-07, 23.32% id in 253 aa, and to Streptomyces lavendulae hypothetical transcriptional regulator in mcrB 3'region SWALL:YMCR_STRLA (SWALL:P43458) (281 aa) fasta scores: E(): 5e-05, 26.97% id in 241 aa; putative regulatory protein 3359990 3286949 BF9343_2809 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_212510.1 3359169 R 272559 CDS YP_212511.1 60682367 3286946 complement(3360033..3360398) 1 NC_003228.3 Similar to Salmonella typhi, and Salmonella typhimurium hypothetical protein T2454 or STM0409 or STY0447 SWALL:AAO70044 (EMBL:AE016842) (121 aa) fasta scores: E(): 3.8e-09, 36.66% id in 120 aa, and to Pasteurella multocida hypothetical protein PM0279 SWALL:Q9CNZ1 (EMBL:AE006063) (126 aa) fasta scores: E(): 2.1e-06, 34.12% id in 126 aa; hypothetical protein 3360398 3286946 BF9343_2810 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212511.1 3360033 R 272559 CDS YP_212512.1 60682368 3286945 complement(3360504..3361310) 1 NC_003228.3 Similar to Caulobacter crescentus transcriptional regulator, AraC family CC2573 SWALL:Q9A584 (EMBL:AE005925) (270 aa) fasta scores: E(): 1.7e-13, 25.96% id in 258 aa, and to Listeria monocytogenes hypothetical protein LMO2672 SWALL:Q8Y406 (EMBL:AL591984) (268 aa) fasta scores: E(): 6.3e-09, 29.88% id in 251 aa; putative regulatory protein 3361310 3286945 BF9343_2811 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_212512.1 3360504 R 272559 CDS YP_212513.1 60682369 3287403 complement(3361696..3365298) 1 NC_003228.3 Very low similarity to the C-terminal region of Cytophaga xylanolytica ArfI SWALL:O68278 (EMBL:AF028018) (510 aa) fasta scores: E(): 5.3e-12, 23.24% id in 456 aa, and to parts of Bacillus stearothermophilus alpha-L-arabinofuranosidase AbfA SWALL:ABFA_BACST (SWALL:Q9XBQ3) (501 aa) fasta scores: E(): 5.3e-10, 33.16% id in 199 aa; hypothetical protein 3365298 3287403 BF9343_2812 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212513.1 3361696 R 272559 CDS YP_212514.1 60682370 3286955 complement(3365482..3368061) 1 NC_003228.3 Similar to Sulfolobus solfataricus beta-xylosidase SSO3032 SWALL:Q97UI4 (EMBL:AE006894) (754 aa) fasta scores: E(): 3.7e-74, 39.65% id in 749 aa, and to Escherichia coli periplasmic beta-glucosidase precursor BglX or B2132 SWALL:BGLX_ECOLI (SWALL:P33363) (765 aa) fasta scores: E(): 5.1e-29, 35.4% id in 774 aa; putative exported hydrolase 3368061 3286955 BF9343_2813 Bacteroides fragilis NCTC 9343 putative exported hydrolase YP_212514.1 3365482 R 272559 CDS YP_212515.1 60682371 3286952 complement(3368080..3369084) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron methylcobamide:CoM methyltransferase MtbA BT0343 BTALL:AAO75450 (EMBL:AE016927) (338 aa) fasta scores: E(): 2e-79, 61.86% id in 333 aa, and to Methanosarcina acetivorans methylcobamide:CoM methyltransferase MtbA or MA0146 SWALL:MTBA_METAC (SWALL:P58869) (338 aa) fasta scores: E(): 1.3e-18, 30.07% id in 276 aa; putative uroporphirinogen biosynthesis-related protein 3369084 3286952 BF9343_2814 Bacteroides fragilis NCTC 9343 putative uroporphirinogen biosynthesis-related protein YP_212515.1 3368080 R 272559 CDS YP_212516.1 60682372 3286956 complement(3369093..3369689) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0342 SWALL:AAO75449 (EMBL:AE016927) (257 aa) fasta scores: E(): 5.4e-21, 44.15% id in 154 aa, and to Clostridium tetani putative 5-methyltetrahydrofolate--homocysteine methyltransferase CTC01807 SWALL:AAO36331 (EMBL:AE015942) (226 aa) fasta scores: E(): 8.1e-09, 26.88% id in 186 aa; hypothetical protein 3369689 3286956 BF9343_2815 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212516.1 3369093 R 272559 CDS YP_212517.1 60682373 3286954 complement(3369778..3370413) 1 NC_003228.3 Similar to Methanosarcina barkeri dimethylamine corrinoid protein MtbC SWALL:MTBC_METBA (SWALL:O93657) (212 aa) fasta scores: E(): 7.9e-28, 47.34% id in 207 aa, and to Escherichia coli 5-methyltetrahydrofolate--homocysteine methyltransferase MetH or B4019 SWALL:METH_ECOLI (SWALL:P13009) (1226 aa) fasta scores: E(): 2.7e-15, 34.71% id in 193 aa; putative dimethylamine corrinoid protein 3370413 3286954 BF9343_2816 Bacteroides fragilis NCTC 9343 putative dimethylamine corrinoid protein YP_212517.1 3369778 R 272559 CDS YP_212518.1 60682374 3286953 complement(3370437..3371687) 1 NC_003228.3 Similar to Methylobacterium sp. CmuC protein SWALL:Q9X7G6 (EMBL:AJ011317) (378 aa) fasta scores: E(): 7e-05, 22.81% id in 355 aa; putative methyltransferase 3371687 3286953 BF9343_2817 Bacteroides fragilis NCTC 9343 putative methyltransferase YP_212518.1 3370437 R 272559 CDS YP_212519.1 60682375 3286962 complement(3371701..3374286) 1 NC_003228.3 Similar to Sulfolobus solfataricus beta-xylosidase SSO3032 SWALL:Q97UI4 (EMBL:AE006894) (754 aa) fasta scores: E(): 6.9e-73, 37.89% id in 760 aa, and to Escherichia coli periplasmic beta-glucosidase precursor BglX or B2132 SWALL:BGLX_ECOLI (SWALL:P33363) (765 aa) fasta scores: E(): 3.5e-26, 32.82% id in 789 aa; putative exported hydrolase 3374286 3286962 BF9343_2818 Bacteroides fragilis NCTC 9343 putative exported hydrolase YP_212519.1 3371701 R 272559 CDS YP_212520.1 60682376 3286951 complement(3374458..3376146) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entires, such as: putative outer membrane protein, probably involved in nutrient binding BT2460 SWALL:AAO77567 (EMBL:AE016936) (572 aa) fasta scores: E(): 1.9e-22, 28.05% id in 581 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2195 SWALL:AAO77302 (EMBL:AE016935) (580 aa) fasta scores: E(): 2.2e-16, 27.28% id in 590 aa; hypothetical protein 3376146 3286951 BF9343_2819 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212520.1 3374458 R 272559 CDS YP_212521.1 60682377 3286950 complement(3376167..3379502) 1 NC_003228.3 Similar to Bacteroides fragilis oter membrane protein FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 6.6e-28, 31.92% id in 1159 aa, and to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 3.2e-27, 30.37% id in 1070 aa; hypothetical protein 3379502 3286950 BF9343_2820 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212521.1 3376167 R 272559 CDS YP_212522.1 60682378 3286960 complement(3379633..3380658) 1 NC_003228.3 Similar to Pseudomonas aeruginosa probable transmembrane sensor PA2388 SWALL:Q9I192 (EMBL:AE004665) (331 aa) fasta scores: E(): 1.9e-08, 27.39% id in 303 aa, and to Nitrosomonas europaea putative transmembrane sensor NE1989 SWALL:Q82TB4 (EMBL:BX321863) (336 aa) fasta scores: E(): 5.2e-08, 26.07% id in 303 aa; hypothetical protein 3380658 3286960 BF9343_2821 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212522.1 3379633 R 272559 CDS YP_212523.1 60682379 3286959 complement(3380746..3380877) 1 NC_003228.3 hypothetical protein 3380877 3286959 BF9343_2822 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212523.1 3380746 R 272559 CDS YP_212524.1 60682380 3286969 complement(3380874..3381470) 1 NC_003228.3 Similar to Oceanobacillus iheyensis RNA polymerase ECF-type sigma factor OB2660 SWALL:Q8EN30 (EMBL:AP004602) (187 aa) fasta scores: E(): 7.2e-08, 26.34% id in 186 aa, and to Ralstonia solanacearum probable RNA polymerase sigma-E factor RpoE1 or RSC1055 or RS04163 SWALL:Q8Y0I9 (EMBL:AL646062) (199 aa) fasta scores: E(): 5.9e-06, 25.9% id in 193 aa; putative ECF sigma factor 3381470 3286969 BF9343_2823 Bacteroides fragilis NCTC 9343 putative ECF sigma factor YP_212524.1 3380874 R 272559 CDS YP_212525.1 60682381 3286961 3382076..3382318 1 NC_003228.3 hypothetical protein 3382318 3286961 BF9343_2824 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212525.1 3382076 D 272559 CDS YP_212526.1 60682382 3286958 3382321..3382557 1 NC_003228.3 hypothetical protein 3382557 3286958 BF9343_2825 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212526.1 3382321 D 272559 CDS YP_212527.1 60682383 3286957 3382559..3383152 1 NC_003228.3 Similar to Streptococcus mutans conserved hypothetical protein, possible intracellular protease SMU.1682c SWALL:Q8DSS7 (EMBL:AE014997) (191 aa) fasta scores: E(): 5.9e-24, 39.48% id in 195 aa, and to Lactobacillus plantarum hypothetical protein LP_3142 SWALL:CAD65304 (EMBL:AL935261) (195 aa) fasta scores: E(): 4.6e-13, 35.6% id in 191 aa; hypothetical protein 3383152 3286957 BF9343_2826 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212527.1 3382559 D 272559 CDS YP_212528.1 60682384 3286966 3383343..3383471 1 NC_003228.3 Similar to the N-terminal region of Bacteroides thetaiotaomicron conserved hypothetical protein BT1390 SWALL:AAO76497 (EMBL:AE016931) (153 aa) fasta scores: E(): 7.8, 39.02% id in 41 aa; hypothetical protein 3383471 3286966 BF9343_2828 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212528.1 3383343 D 272559 CDS YP_212529.1 60682385 3286976 complement(3383733..3384125) 1 NC_003228.3 Similar to Methanosarcina acetivorans MutT/Nudix family protein MA1602 SWALL:Q8TQE2 (EMBL:AE010831) (132 aa) fasta scores: E(): 7.6e-22, 46.51% id in 129 aa, and to Escherichia coli CTP pyrophosphohydrolase NudG or B1759 SWALL:NUDG_ECOLI (SWALL:P77788) (135 aa) fasta scores: E(): 8.6e-06, 36.29% id in 124 aa; putative CTP pyrophosphohydrolase 3384125 3286976 BF9343_2829 Bacteroides fragilis NCTC 9343 putative CTP pyrophosphohydrolase YP_212529.1 3383733 R 272559 CDS YP_212530.1 60682387 3286968 3384516..3386243 1 NC_003228.3 Similar to Escherichia coli 5-methylcytosine-specific restriction enzyme B McrB or RglB or B4346 SWALL:MCRB_ECOLI (SWALL:P15005) (459 aa) fasta scores: E(): 7.3e-21, 29.42% id in 333 aa, and to Bacillus cereus 5-methylcytosine-specific restriction related enzyme McrB SWALL:Q9XBI7 (EMBL:AJ007510) (343 aa) fasta scores: E(): 6e-14, 32.38% id in 281 aa; putative restriction enzyme related protein 3386243 3286968 BF9343_2831 Bacteroides fragilis NCTC 9343 putative restriction enzyme related protein YP_212530.1 3384516 D 272559 CDS YP_212531.1 60682386 18501138 3384516..>3385742 1 NC_003228.3 Similar to Escherichia coli 5-methylcytosine-specific restriction enzyme B McrB or RglB or B4346 SWALL:MCRB_ECOLI (SWALL:P15005) (459 aa) fasta scores: E(): 7.3e-21, 29.42% id in 333 aa, and to Bacillus cereus 5-methylcytosine-specific restriction related enzyme McrB SWALL:Q9XBI7 (EMBL:AJ007510) (343 aa) fasta scores: E(): 6e-14, 32.38% id in 281 aa; putative methylcytosine-specific restriction related protein >3385742 18501138 BF9343_2830 Bacteroides fragilis NCTC 9343 putative methylcytosine-specific restriction related protein YP_212531.1 3384516 D 272559 CDS YP_212532.1 60682388 3286964 3386260..3388488 1 NC_003228.3 Similar to parts of Bacillus anthracis conserved domain protein BA0928 SWALL:Q81UE9 (EMBL:AE017027) (815 aa) fasta scores: E(): 8e-28, 27.19% id in 559 aa, and of Methanobacterium thermoautotrophicum hypothetical protein MTH502 SWALL:O26602 (EMBL:AE000833) (567 aa) fasta scores: E(): 0.00017, 23.01% id in 578 aa; hypothetical protein 3388488 3286964 BF9343_2832 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212532.1 3386260 D 272559 CDS YP_212533.1 60682389 3286963 complement(3388475..3388753) 1 NC_003228.3 Similar to Bacillus subtilis hypothetical protein YsdA SWALL:P94519 (EMBL:Z75208) (89 aa) fasta scores: E(): 1e-10, 45.78% id in 83 aa, and to Clostridium perfringens hypothetical protein CPE0552 SWALL:Q8XMY6 (EMBL:AP003187) (87 aa) fasta scores: E(): 1.4e-10, 39.75% id in 83 aa; hypothetical protein 3388753 3286963 BF9343_2833 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212533.1 3388475 R 272559 CDS YP_212534.1 60682390 3286974 3388844..3389761 1 NC_003228.3 Similar to Pseudomonas aeruginosa hypothetical protein PA3840 SWALL:Q9HXG4 (EMBL:AE004801) (336 aa) fasta scores: E(): 2.5e-61, 52.25% id in 310 aa, and to Yersinia pestis hypothetical protein YPO2519 or Y1668 SWALL:Q8ZDP0 (EMBL:AJ414152) (336 aa) fasta scores: E(): 1.7e-59, 50.98% id in 304 aa; hypothetical protein 3389761 3286974 BF9343_2834 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212534.1 3388844 D 272559 CDS YP_212535.1 60682391 3286975 3390041..3390514 1 NC_003228.3 Similar to Chlorobium tepidum arsenate reductase ArsC or CT1725 SWALL:Q8KBQ9 (EMBL:AE012926) (144 aa) fasta scores: E(): 1.6e-12, 30.43% id in 138 aa, and to Bacillus subtilis arsenate reductase ArsC or BSU25780 SWALL:ARSC_BACSU (SWALL:P45947) (139 aa) fasta scores: E(): 0.00063, 29.1% id in 134 aa; putative arsenate reductase 3390514 3286975 BF9343_2835 Bacteroides fragilis NCTC 9343 putative arsenate reductase YP_212535.1 3390041 D 272559 CDS YP_212536.1 60682392 3286971 complement(3390520..3394185) 1 NC_003228.3 Similar to Vibrio vulnificus ATPase involved in DNA repair VV12184 SWALL:Q8DAL0 (EMBL:AE016804) (1201 aa) fasta scores: E(): 3.4e-16, 19.9% id in 1256 aa, and to Shewanella oneidensis hypothetical protein SO4008 SWALL:Q8EAA0 (EMBL:AE015831) (1216 aa) fasta scores: E(): 1.7e-12, 22.72% id in 1294 aa; hypothetical protein 3394185 3286971 BF9343_2836 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212536.1 3390520 R 272559 CDS YP_212537.1 60682393 3287176 complement(3394169..3394729) 1 NC_003228.3 hypothetical protein 3394729 3287176 BF9343_2837 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212537.1 3394169 R 272559 CDS YP_212538.1 60682394 3286972 complement(3394853..3396028) 1 NC_003228.3 hypothetical protein 3396028 3286972 BF9343_2838 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212538.1 3394853 R 272559 CDS YP_212539.1 60682395 3287383 complement(3396099..3397043) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 membrane protein, putative PG0333 SWALL:AAQ65546 (EMBL:AE017173) (302 aa) fasta scores: E(): 1.2e-38, 39.79% id in 299 aa, and to Clostridium perfringens hypothetical protein CPE0758 SWALL:Q8XMD1 (EMBL:AP003188) (308 aa) fasta scores: E(): 1.9e-21, 30.99% id in 313 aa; hypothetical protein 3397043 3287383 BF9343_2839 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212539.1 3396099 R 272559 CDS YP_212540.1 60682396 3286973 3397117..3397413 1 NC_003228.3 Similar, although shoreter in its C-terminal region, to Clostridium perfringens hypothetical protein CPE0229 SWALL:Q8XNV3 (EMBL:AP003185) (99 aa) fasta scores: E(): 3.5e-20, 56.25% id in 96 aa, and to Escherichia coli O6 hypothetical protein YgbA or C3293 SWALL:Q8FEL4 (EMBL:AE016765) (114 aa) fasta scores: E(): 1.1e-14, 47.42% id in 97 aa; hypothetical protein 3397413 3286973 BF9343_2840 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212540.1 3397117 D 272559 CDS YP_212541.1 60682397 3286970 complement(3397692..3397922) 1 NC_003228.3 hypothetical protein 3397922 3286970 BF9343_2841 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212541.1 3397692 R 272559 CDS YP_212542.1 60682398 3286982 complement(3398060..3399493) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 potassium uptake protein TrkH or PG2219 SWALL:AAQ67159 (EMBL:AE017179) (487 aa) fasta scores: E(): 1.8e-77, 43.3% id in 478 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri trk system potassium uptake protein TrkH of B3849 or Z5371 or ECS4777 or SF3925 or S3827 SWALL:TRKH_ECOLI (SWALL:P21166) (483 aa) fasta scores: E(): 8.3e-66, 37.57% id in 479 aa; putative K(+) transport-related membrane protein 3399493 3286982 BF9343_2842 Bacteroides fragilis NCTC 9343 putative K(+) transport-related membrane protein YP_212542.1 3398060 R 272559 CDS YP_212543.1 60682399 3286980 complement(3399763..3400617) 1 NC_003228.3 Similar to Pseudomonas indica PobR SWALL:Q9F5V9 (EMBL:AF302797) (285 aa) fasta scores: E(): 1.9e-08, 24.05% id in 237 aa, and to Vibrio vulnificus AraC-type DNA-binding domain-containing protein VV21046 SWALL:Q8D578 (EMBL:AE016811) (282 aa) fasta scores: E(): 1.7e-06, 23.43% id in 256 aa; putative AraC-family regulatory protein 3400617 3286980 BF9343_2843 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212543.1 3399763 R 272559 CDS YP_212544.1 60682400 3286979 3400749..3401921 1 NC_003228.3 Similar to Bacillus cereus bicyclomycin resistance protein BC0204 SWALL:Q81IY9 (EMBL:AE016998) (416 aa) fasta scores: E(): 5.5e-50, 36.96% id in 395 aa, and to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or B2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 7.5e-29, 28.46% id in 397 aa; putative antibiotic resistance transport membrane protein 3401921 3286979 BF9343_2844 Bacteroides fragilis NCTC 9343 putative antibiotic resistance transport membrane protein YP_212544.1 3400749 D 272559 CDS YP_212545.1 60682401 3286981 3402037..3402801 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 oxidoreductase, short chain dehydrogenase/reductase family PG1221 SWALL:AAQ66311 (EMBL:AE017176) (241 aa) fasta scores: E(): 4.2e-43, 50.42% id in 236 aa, and to Leptospira interrogans 3-oxoacyl-(acyl carrier protein) reductase LB034 SWALL:Q8EY23 (EMBL:AE011592) (251 aa) fasta scores: E(): 1.2e-15, 30% id in 250 aa; putative oxidoreductase 3402801 3286981 BF9343_2845 Bacteroides fragilis NCTC 9343 putative oxidoreductase YP_212545.1 3402037 D 272559 CDS YP_212546.1 60682402 3286989 3402858..3403700 1 NC_003228.3 Similar to Chromobacterium violaceum ATCC 12472 probable AraC-family transcriptional regulator CV4141 SWALL:AAQ61802 (EMBL:AE016924) (286 aa) fasta scores: E(): 4e-22, 31.72% id in 290 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri right origin-binding protein Rob or B4396 or Z5999 or ECS5354 or SF4428 or S4699 SWALL:ROB_ECOLI (SWALL:P27292) (289 aa) fasta scores: E(): 1.3e-07, 23.79% id in 269 aa; putative AraC-family regulatory protein 3403700 3286989 BF9343_2846 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212546.1 3402858 D 272559 CDS YP_212547.1 60682403 3286978 3403722..3403991 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4495 SWALL:Q89Z82 (EMBL:AE016945) (89 aa) fasta scores: E(): 6.7e-23, 69.66% id in 89 aa; hypothetical protein 3403991 3286978 BF9343_2847 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212547.1 3403722 D 272559 CDS YP_212548.1 60682404 3286977 complement(3404270..3404533) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4494 SWALL:Q89Z83 (EMBL:AE016945) (106 aa) fasta scores: E(): 2.4e-18, 61.44% id in 83 aa, and to Xanthomonas axonopodis hypothetical protein XAC1453 SWALL:Q8PMH5 (EMBL:AE011777) (100 aa) fasta scores: E(): 2.1e-08, 43.75% id in 80 aa; hypothetical protein 3404533 3286977 BF9343_2848 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212548.1 3404270 R 272559 CDS YP_212549.1 60682405 3286986 complement(3404568..3405893) 1 NC_003228.3 Similar to Thermoplasma acidophilum hypothetical protein TA1272 SWALL:Q9HIQ8 (EMBL:AL445067) (286 aa) fasta scores: E(): 1.1e-29, 37.41% id in 286 aa, and to Haemophilus ducreyi hypothetical protein HD0261 SWALL:AAP95244 (EMBL:AE017151) (297 aa) fasta scores: E(): 6.1e-29, 37.75% id in 294 aa; hypothetical protein 3405893 3286986 BF9343_2849 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212549.1 3404568 R 272559 CDS YP_212550.1 60682406 3286988 complement(3405942..3406700) 1 NC_003228.3 Similar to Escherichia coli hypothetical protein YegX or B2102 SWALL:YEGX_ECOLI (SWALL:P76421) (272 aa) fasta scores: E(): 8.5e-35, 41.05% id in 246 aa, and to Shigella flexneri hypothetical protein YegX or S2289 SWALL:AAP17521 (EMBL:AE016985) (273 aa) fasta scores: E(): 1.8e-34, 40.4% id in 250 aa; putative hydrolase 3406700 3286988 BF9343_2850 Bacteroides fragilis NCTC 9343 putative hydrolase YP_212550.1 3405942 R 272559 CDS YP_212551.1 60682407 3286987 complement(3406936..3408639) 1 NC_003228.3 hypothetical protein 3408639 3286987 BF9343_2851 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212551.1 3406936 R 272559 CDS YP_212552.1 60682408 3286984 complement(3408736..3410379) 1 NC_003228.3 Similar to Solanum tuberosum pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit SWALL:PFPB_SOLTU (SWALL:P21343) (552 aa) fasta scores: E(): 6.2e-106, 52.02% id in 544 aa, and to Ricinus communis pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit Pfp-betA SWALL:PFPB_RICCO (SWALL:Q41141) (552 aa) fasta scores: E(): 9.3e-106, 51.65% id in 544 aa; putative phosphofructokinase 3410379 3286984 BF9343_2852 Bacteroides fragilis NCTC 9343 putative phosphofructokinase YP_212552.1 3408736 R 272559 CDS YP_212553.1 60682409 3286983 complement(3410594..3413413) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3015 SWALL:Q8A3D9 (EMBL:AE016938) (968 aa) fasta scores: E(): 3.9e-158, 56.16% id in 974 aa, and C-terminal region to Bacillus anthracis conserved domain protein BA5305 SWALL:Q81XD4 (EMBL:AE017040) (554 aa) fasta scores: E(): 5.2e-13, 33.77% id in 453 aa; putative lipoprotein 3413413 3286983 BF9343_2853 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212553.1 3410594 R 272559 CDS YP_212554.1 60682410 3286926 complement(3413782..3414684) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative chitobiase BT3014 SWALL:Q8A3E0 (EMBL:AE016938) (298 aa) fasta scores: E(): 6.2e-24, 38.69% id in 292 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4270 SWALL:Q89ZV1 (EMBL:AE016944) (605 aa) fasta scores: E(): 3.9e-14, 29.49% id in 278 aa; hypothetical protein 3414684 3286926 BF9343_2854 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212554.1 3413782 R 272559 CDS YP_212555.1 60682411 3286985 complement(3414700..3416610) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3013 SWALL:Q8A3E1 (EMBL:AE016938) (644 aa) fasta scores: E(): 1e-82, 47.56% id in 656 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2967 SWALL:Q8A3I7 (EMBL:AE016938) (648 aa) fasta scores: E(): 8.3e-45, 32.79% id in 680 aa; hypothetical protein 3416610 3286985 BF9343_2855 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212555.1 3414700 R 272559 CDS YP_212556.1 60682412 3286928 complement(3416620..3419997) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3012 SWALL:Q8A3E2 (EMBL:AE016938) (1125 aa) fasta scores: E(): 0, 55.28% id in 1125 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2905 SWALL:Q8A3P9 (EMBL:AE016938) (1067 aa) fasta scores: E(): 1.2e-138, 42.33% id in 1056 aa; hypothetical protein 3419997 3286928 BF9343_2856 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212556.1 3416620 R 272559 CDS YP_212557.1 60682413 3286927 complement(3420035..3420712) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative anti-sigma factor BT4248 SWALL:Q89ZX3 (EMBL:AE016944) (217 aa) fasta scores: E(): 1e-44, 57.69% id in 208 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT3011 SWALL:Q8A3E3 (EMBL:AE016938) (302 aa) fasta scores: E(): 5.4e-24, 37.71% id in 228 aa; hypothetical protein 3420712 3286927 BF9343_2857 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212557.1 3420035 R 272559 CDS YP_212558.1 60682414 3286992 3421418..3421966 1 NC_003228.3 Similar to Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 2.2e-16, 36.46% id in 181 aa, and to Leptospira interrogans probable RNA polymerase ECF-type sigma factor RpoE2 or LA4098 SWALL:Q8EYW5 (EMBL:AE011563) (192 aa) fasta scores: E(): 3.6e-07, 26.4% id in 178 aa; putative sigma factor 3421966 3286992 BF9343_2858 Bacteroides fragilis NCTC 9343 putative sigma factor YP_212558.1 3421418 D 272559 CDS YP_212559.1 60682415 3286991 complement(3421985..3423361) 1 NC_003228.3 Similar to Chromobacterium violaceum ATCC 12472 outer membrane efflux protein OprM or CV0433 SWALL:AAQ58111 (EMBL:AE016911) (466 aa) fasta scores: E(): 5.8e-56, 37.6% id in 468 aa, and to Pseudomonas aeruginosa outer membrane protein precursor OprM or OprK or PA0427 SWALL:OPRM_PSEAE (SWALL:Q51487) (485 aa) fasta scores: E(): 2.5e-39, 35.84% id in 477 aa; putative puter membrane protein 3423361 3286991 BF9343_2859 Bacteroides fragilis NCTC 9343 putative puter membrane protein YP_212559.1 3421985 R 272559 CDS YP_212560.1 60682416 3289097 complement(3423365..3426511) 1 NC_003228.3 Similar to Escherichia coli probable aminoglycoside efflux pump AcrD or B2470 SWALL:ACRD_ECOLI (SWALL:P24177) (1037 aa) fasta scores: E(): 2.5e-158, 41.96% id in 1039 aa, and to Chromobacterium violaceum ATCC 12472 acriflavin resistance protein D AcrD or CV0434 SWALL:AAQ58112 (EMBL:AE016911) (1047 aa) fasta scores: E(): 1.4e-178, 45.98% id in 1046 aa; putative aminoglycoside efflux pump 3426511 acrD 3289097 acrD Bacteroides fragilis NCTC 9343 putative aminoglycoside efflux pump YP_212560.1 3423365 R 272559 CDS YP_212561.1 60682417 3286993 complement(3426605..3427795) 1 NC_003228.3 Similar to Chromobacterium violaceum ATCC 12472 probable multidrug efflux membrane permease CV0435 SWALL:AAQ58113 (EMBL:AE016911) (395 aa) fasta scores: E(): 3.2e-36, 37.71% id in 350 aa, and to Escherichia coli acriflavine resistance protein E precursor AcrE or EnvC or B3265 SWALL:ACRE_ECOLI (SWALL:P24180) (385 aa) fasta scores: E(): 6e-31, 32.07% id in 371 aa; putative acriflavine resistance protein E precursor 3427795 3286993 BF9343_2861 Bacteroides fragilis NCTC 9343 putative acriflavine resistance protein E precursor YP_212561.1 3426605 R 272559 CDS YP_212562.1 60682418 3286903 3428114..3430324 1 NC_003228.3 Similar to Pseudomonas aeruginosa hypothetical protein PA3339 SWALL:Q9HYQ6 (EMBL:AE004756) (728 aa) fasta scores: E(): 1.9e-41, 26.48% id in 774 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YchK or B1234 or SF1234 or S1320 SWALL:YCHK_ECOLI (SWALL:P37053) (314 aa) fasta scores: E(): 5.6e-07, 27.8% id in 241 aa; hypothetical protein 3430324 3286903 BF9343_2862 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212562.1 3428114 D 272559 CDS YP_212563.1 60682419 3286902 3430573..3430842 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0261 SWALL:Q8AB50 (EMBL:AE016926) (89 aa) fasta scores: E(): 2.2e-27, 86.51% id in 89 aa; hypothetical protein 3430842 3286902 BF9343_2863 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212563.1 3430573 D 272559 CDS YP_212564.1 60682420 3286990 3430845..3431402 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 acyltransferase, putative PG1355 SWALL:AAQ66419 (EMBL:AE017176) (176 aa) fasta scores: E(): 4.4e-33, 47.67% id in 172 aa, and to Shewanella oneidensis acyltransferase family protein SO0123 SWALL:Q8EKH0 (EMBL:AE015463) (186 aa) fasta scores: E(): 7.1e-25, 41.71% id in 163 aa; putative acyltransferase 3431402 3286990 BF9343_2864 Bacteroides fragilis NCTC 9343 putative acyltransferase YP_212564.1 3430845 D 272559 CDS YP_212565.1 60682421 3286897 3431409..3432179 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hydrolase, carbon-nitrogen family PG1354 SWALL:AAQ66418 (EMBL:AE017176) (273 aa) fasta scores: E(): 8.5e-47, 46.09% id in 256 aa, and to Escherichia coli hypothetical protein YafV or B0219 SWALL:YAFV_ECOLI (SWALL:Q47679) (256 aa) fasta scores: E(): 1e-41, 45.21% id in 261 aa; putative hydrolase 3432179 3286897 BF9343_2865 Bacteroides fragilis NCTC 9343 putative hydrolase YP_212565.1 3431409 D 272559 CDS YP_212566.1 60682422 3286931 3432317..3433483 1 NC_003228.3 Similar to Streptomyces avermitilis putative N-acetylglucosamine-6-phosphate deacetylase NagA2 or SAV3941 SWALL:Q82GF6 (EMBL:AP005037) (381 aa) fasta scores: E(): 8.3e-40, 33.68% id in 380 aa, and to Escherichia coli, and Escherichia coli O157:H7 N-acetylglucosamine-6-phosphate deacetylase NagA or B0677 or Z0824 or ECS0707 SWALL:NAGA_ECOLI (SWALL:P15300) (382 aa) fasta scores: E(): 2.3e-28, 29.61% id in 385 aa; putative N-acetylglucosamine-6-phosphate deacetylase 3433483 3286931 BF9343_2866 Bacteroides fragilis NCTC 9343 putative N-acetylglucosamine-6-phosphate deacetylase YP_212566.1 3432317 D 272559 CDS YP_212567.1 60682423 3286910 3433763..3435754 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 glucosamine-6-phosphate isomerase, putative PG1285 SWALL:AAQ66364 (EMBL:AE017176) (655 aa) fasta scores: E(): 3.4e-161, 60.88% id in 657 aa, and to Rhodopirellula baltica glucosamine-6-phosphate isomerase 2 Gpi2 or NagB or RB3556 SWALL:CAD73259 (EMBL:BX294139) (637 aa) fasta scores: E(): 6e-100, 50.87% id in 627 aa, and N-terminal region similar to Bacillus subtilis glucosamine-6-phosphate deaminase 1 NagB or BSU35020 SWALL:NAGB_BACSU (SWALL:O35000) (242 aa) fasta scores: E(): 2.7e-28, 40.67% id in 236 aa; putative glucosamine-6-phosphate deaminase 3435754 3286910 BF9343_2867 Bacteroides fragilis NCTC 9343 putative glucosamine-6-phosphate deaminase YP_212567.1 3433763 D 272559 CDS YP_212568.1 60682424 3286901 3435789..3436571 1 NC_003228.3 Similar to Listeria monocytogenes hypothetical protein LMO1935 SWALL:Q8Y5X0 (EMBL:AL591981) (326 aa) fasta scores: E(): 1.3e-17, 33.47% id in 242 aa, and to Nostoc commune protein-tyrosine phosphatase precursor IphP or Iph SWALL:IPHP_NOSCO (SWALL:Q05918) (294 aa) fasta scores: E(): 3.6e-13, 29.64% id in 226 aa; hypothetical protein 3436571 3286901 BF9343_2868 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212568.1 3435789 D 272559 CDS YP_212569.1 60682425 3286929 3436673..3439582 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron xanthan lyase BT0257 SWALL:Q8AB54 (EMBL:AE016926) (970 aa) fasta scores: E(): 0, 76.63% id in 976 aa; hypothetical protein 3439582 3286929 BF9343_2869 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212569.1 3436673 D 272559 CDS YP_212570.1 60682426 3286907 complement(3439621..3439860) 1 NC_003228.3 hypothetical protein 3439860 3286907 BF9343_2870 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212570.1 3439621 R 272559 CDS YP_212571.1 60682427 3286930 3440002..3440436 1 NC_003228.3 hypothetical protein 3440436 3286930 BF9343_2871 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212571.1 3440002 D 272559 CDS YP_212572.1 60682428 3286909 3440689..3441009 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0256 SWALL:Q8AB55 (EMBL:AE016926) (105 aa) fasta scores: E(): 7e-33, 88.57% id in 105 aa; hypothetical protein 3441009 3286909 BF9343_2872 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212572.1 3440689 D 272559 CDS YP_212573.1 60682429 3286908 3441006..3441221 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0255 SWALL:Q8AB56 (EMBL:AE016926) (74 aa) fasta scores: E(): 6e-18, 75.71% id in 70 aa; hypothetical protein 3441221 3286908 BF9343_2873 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212573.1 3441006 D 272559 CDS YP_212574.1 60682430 3286916 3441218..3441562 1 NC_003228.3 hypothetical protein 3441562 3286916 BF9343_2874 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212574.1 3441218 D 272559 CDS YP_212575.1 60682431 3286905 3441567..3442043 1 NC_003228.3 Similar to Xanthomonas axonopodis hypothetical protein XAC1464 SWALL:Q8PMG4 (EMBL:AE011778) (161 aa) fasta scores: E(): 2.3e-13, 35.4% id in 161 aa, and to Bacillus subtilis hypothetical protein YqgC or BSU25030 SWALL:YQGC_BACSU (SWALL:P54486) (160 aa) fasta scores: E(): 2.5e-11, 31.44% id in 159 aa; hypothetical protein 3442043 3286905 BF9343_2875 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212575.1 3441567 D 272559 CDS YP_212576.1 60682432 3286904 3442069..3443925 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 radical SAM domain protein PG0934 SWALL:AAQ66068 (EMBL:AE017175) (634 aa) fasta scores: E(): 1.6e-115, 70.55% id in 618 aa, and to Escherichia coli hypothetical protein YgiQ or B3015/B3016 SWALL:YGIQ_ECOLI (SWALL:Q46861) (739 aa) fasta scores: E(): 8.6e-40, 40.86% id in 651 aa; hypothetical protein 3443925 3286904 BF9343_2876 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212576.1 3442069 D 272559 CDS YP_212577.1 60682433 3286914 complement(3443950..3447327) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 transcription-repair coupling factor Mfd or PG1774 SWALL:AAQ66775 (EMBL:AE017178) (1122 aa) fasta scores: E(): 0, 56.67% id in 1101 aa, and to Bacillus subtilis transcription-repair coupling factor Mfd or BSU00550 SWALL:MFD_BACSU (SWALL:P37474) (1177 aa) fasta scores: E(): 1.7e-102, 35.32% id in 1090 aa; putative transcription-repair coupling factor 3447327 3286914 BF9343_2877 Bacteroides fragilis NCTC 9343 putative transcription-repair coupling factor YP_212577.1 3443950 R 272559 CDS YP_212578.1 60682434 3286913 3447520..3448272 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 glycosyl transferase, group 2 family protein PG0920 SWALL:AAQ66056 (EMBL:AE017175) (226 aa) fasta scores: E(): 6.8e-57, 65.33% id in 225 aa, and to Mycobacterium smegmatis putative polyprenol phosphate mannosyl transferase 1 Ppm1 SWALL:Q9F408 (EMBL:AJ294477) (265 aa) fasta scores: E(): 2.5e-41, 48.52% id in 237 aa; putative glycosyltransferase 3448272 3286913 BF9343_2878 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_212578.1 3447520 D 272559 CDS YP_212579.1 60682435 3286915 3448276..3449655 1 NC_003228.3 Similar to Xanthomonas axonopodis dihydroorotase PyrC or XAC2360 SWALL:Q8PK17 (EMBL:AE011873) (449 aa) fasta scores: E(): 2.9e-68, 47.95% id in 465 aa, and to Escherichia coli allantoinase AllB or GlxB3 or B0512 SWALL:ALN_ECOLI (SWALL:P77671) (453 aa) fasta scores: E(): 2e-27, 26.66% id in 450 aa; putative allantoinase 3449655 3286915 BF9343_2879 Bacteroides fragilis NCTC 9343 putative allantoinase YP_212579.1 3448276 D 272559 CDS YP_212580.1 60682436 3286922 3449695..3449994 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BTt0352 SWALL:Q8AAW0 (EMBL:AE016927) (120 aa) fasta scores: E(): 4.3e-07, 50% id in 72 aa, and to Chlorobium tepidum hypothetical protein CT1796 SWALL:Q8KBJ1 (EMBL:AE012932) (100 aa) fasta scores: E(): 1.5e-05, 34.04% id in 94 aa; hypothetical protein 3449994 3286922 BF9343_2880 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212580.1 3449695 D 272559 CDS YP_212581.1 60682437 3286912 3450031..3450969 1 NC_003228.3 Similar to the C-terminal region of Leptospira interrogans B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase MetH or LB108 SWALL:Q8EXU9 (EMBL:AE011599) (1247 aa) fasta scores: E(): 8.7e-31, 39.21% id in 306 aa, and to the C-terminal region of Escherichia coli 5-methyltetrahydrofolate--homocysteine methyltransferase MetH or B4019 SWALL:METH_ECOLI (SWALL:P13009) (1226 aa) fasta scores: E(): 1.1e-27, 37.65% id in 332 aa; putative 5-methyltetrahydrofolate--homocysteine methyltransferase 3450969 3286912 BF9343_2881 Bacteroides fragilis NCTC 9343 putative 5-methyltetrahydrofolate--homocysteine methyltransferase YP_212581.1 3450031 D 272559 CDS YP_212582.1 60682438 3286911 3451026..3451946 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG2041 SWALL:AAQ67006 (EMBL:AE017179) (243 aa) fasta scores: E(): 9.4e-06, 27.44% id in 215 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1683 SWALL:Q8A742 (EMBL:AE016932) (1064 aa) fasta scores: E(): 6.2e-05, 28.03% id in 239 aa; hypothetical protein 3451946 3286911 BF9343_2882 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212582.1 3451026 D 272559 CDS YP_212583.1 60682439 3286920 complement(3452147..3453034) 1 NC_003228.3 hypothetical protein 3453034 3286920 BF9343_2883 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212583.1 3452147 R 272559 CDS YP_212584.1 60682440 3286919 complement(3453083..3453928) 1 NC_003228.3 hypothetical protein 3453928 3286919 BF9343_2884 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212584.1 3453083 R 272559 CDS YP_212585.1 60682441 3286868 complement(3453977..3455113) 1 NC_003228.3 putative lipoprotein 3455113 3286868 BF9343_2885 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212585.1 3453977 R 272559 CDS YP_212586.1 60682442 3286921 complement(3455194..3455394) 1 NC_003228.3 hypothetical protein 3455394 3286921 BF9343_2886 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212586.1 3455194 R 272559 CDS YP_212587.1 60682443 3286918 3455405..3455833 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1462 SWALL:Q8A7R2 (EMBL:AE016931) (149 aa) fasta scores: E(): 2.3e-16, 37.87% id in 132 aa; hypothetical protein 3455833 3286918 BF9343_2887 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212587.1 3455405 D 272559 CDS YP_212588.1 60682444 3286917 complement(3455901..3456383) 1 NC_003228.3 hypothetical protein 3456383 3286917 BF9343_2888 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212588.1 3455901 R 272559 CDS YP_212589.1 60682445 3286865 3456672..3457184 1 NC_003228.3 Similar to Xanthomonas campestris RNA polymerase ECFf-type sigma factor RfaY or XCC2643 SWALL:Q8P7G8 (EMBL:AE012376) (166 aa) fasta scores: E(): 2.7e-14, 35.03% id in 157 aa, and to Bacillus cereus RNA polymerase ECF-type sigma factor BC2469 SWALL:Q81DA3 (EMBL:AE017006) (179 aa) fasta scores: E(): 1.3e-08, 26.59% id in 173 aa; putative RNA polymerase sigma factor 3457184 3286865 BF9343_2889 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_212589.1 3456672 D 272559 CDS YP_212590.1 60682446 3286867 3457188..3457772 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0247 SWALL:Q8AB64 (EMBL:AE016926) (192 aa) fasta scores: E(): 8.1e-35, 48.67% id in 189 aa; hypothetical protein 3457772 3286867 BF9343_2890 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212590.1 3457188 D 272559 CDS YP_212591.1 60682447 3286866 3457885..3459051 1 NC_003228.3 Similar to Clostridium tetani phosphoesterase CTC01157 SWALL:Q895V9 (EMBL:AE015940) (344 aa) fasta scores: E(): 2.8e-10, 25.07% id in 319 aa, and to Campylobacter jejuni hypothetical protein CJ0846 SWALL:Y846_CAMJE (SWALL:Q9PP77) (374 aa) fasta scores: E(): 3.5e-10, 26.81% id in 399 aa; hypothetical protein 3459051 3286866 BF9343_2891 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212591.1 3457885 D 272559 CDS YP_212592.1 60682448 3286923 3459048..3460772 1 NC_003228.3 Similar to Thermotoga maritima ABC transporter, ATP-binding protein TM0287 SWALL:Q9WYC3 (EMBL:AE001710) (577 aa) fasta scores: E(): 6.5e-92, 42.1% id in 570 aa, and to Bacillus subtilis hypothetical ABC transporter ATP-binding protein YfiB or BSU08210 SWALL:YFIB_BACSU (SWALL:P54718) (573 aa) fasta scores: E(): 1.3e-86, 42.8% id in 570 aa; putative ABC transport system, ATP-binding protein 3460772 3286923 BF9343_2892 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_212592.1 3459048 D 272559 CDS YP_212593.1 60682449 3286876 3460775..3462541 1 NC_003228.3 Similar to Bacillus cereus multidrug resistance ABC transporter ATP-binding and permease protein BC2372 SWALL:Q81DJ2 (EMBL:AE017005) (598 aa) fasta scores: E(): 9.1e-95, 46.71% id in 578 aa, and to Clostridium tetani multidrug resistance ABC transporter CTC00426 SWALL:Q898L9 (EMBL:AE015937) (608 aa) fasta scores: E(): 1.8e-93, 45.32% id in 578 aa; putative ABC transport system, membrane protein 3462541 3286876 BF9343_2893 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212593.1 3460775 D 272559 CDS YP_212594.1 60682450 3286871 complement(3462847..3463104) 1 NC_003228.3 hypothetical protein 3463104 3286871 BF9343_2894 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212594.1 3462847 R 272559 CDS YP_212595.1 60682451 3286924 complement(3463154..3466117) 1 NC_003228.3 Similar to Pseudomonas aeruginosa nuclease SbcCD subunit C SbcC or PA4282 SWALL:SBCC_PSEAE (SWALL:Q9HWB8) (1211 aa) fasta scores: E(): 2.8e-31, 32.45% id in 1214 aa, and to Escherichia coli exonuclease SbcC or RmuA or B0397 SWALL:SBCC_ECOLI (SWALL:P13458) (1048 aa) fasta scores: E(): 3.1e-20, 30.45% id in 1067 aa; putative exonuclease 3466117 3286924 BF9343_2895 Bacteroides fragilis NCTC 9343 putative exonuclease YP_212595.1 3463154 R 272559 CDS YP_212596.1 60682452 3286874 complement(3466286..3467518) 1 NC_003228.3 Similar to Pseudomonas aeruginosa exonuclease SbcD or PA4281 SWALL:Q9HWB9 (EMBL:AE004844) (409 aa) fasta scores: E(): 6.9e-54, 41.36% id in 411 aa, and to Escherichia coli, and Escherichia coli O157:H7 nuclease subunit D SbcD or B0398 or Z0496 or ECS0448 SWALL:SBCD_ECOLI (SWALL:P13457) (400 aa) fasta scores: E(): 2.1e-23, 30.71% id in 420 aa; putative exonuclease 3467518 3286874 BF9343_2896 Bacteroides fragilis NCTC 9343 putative exonuclease YP_212596.1 3466286 R 272559 CDS YP_212597.1 60682453 3286872 3467517..3468365 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 1-acyl-sn-glycerol-3-phosphate acetyltransferase, putative PG1249 SWALL:AAQ66332 (EMBL:AE017176) (204 aa) fasta scores: E(): 5.3e-31, 42.13% id in 197 aa, and to Limnanthes douglasii 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC SWALL:PLSC_LIMDO (SWALL:Q42870) (281 aa) fasta scores: E(): 6.7e-11, 26.48% id in 219 aa; putative phospholipids biosynthesis-related protein 3468365 3286872 BF9343_2897 Bacteroides fragilis NCTC 9343 putative phospholipids biosynthesis-related protein YP_212597.1 3467517 D 272559 CDS YP_212598.1 60682454 3286869 complement(3468496..3471720) 1 NC_003228.3 Similar to Shewanella oneidensis heavy metal efflux pump, CzcA family SO0520 SWALL:Q8EJE7 (EMBL:AE015499) (1075 aa) fasta scores: E(): 2.7e-25, 19.63% id in 1085 aa, and to Escherichia coli hypothetical protein YegO or B2076 SWALL:YEGO_ECOLI (SWALL:P76399) (1025 aa) fasta scores: E(): 6.7e-21, 21.28% id in 1076 aa; putative ABC transport system, membrane protein 3471720 3286869 BF9343_2898 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212598.1 3468496 R 272559 CDS YP_212599.1 60682455 3286884 complement(3471720..3473213) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0285 SWALL:AAQ65504 (EMBL:AE017173) (501 aa) fasta scores: E(): 3.7e-42, 30.38% id in 464 aa, and to Vibrio cholerae outer membrane protein TolC, putative VC1565 SWALL:Q9KRS1 (EMBL:AE004234) (419 aa) fasta scores: E(): 2.8e-08, 22.89% id in 332 aa; putative ABC transport system, exported protein 3473213 3286884 BF9343_2899 Bacteroides fragilis NCTC 9343 putative ABC transport system, exported protein YP_212599.1 3471720 R 272559 CDS YP_212600.1 60682456 3286881 complement(3473216..3476293) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 AcrB/AcrD/AcrF family protein PG0540 SWALL:AAQ65732 (EMBL:AE017173) (1049 aa) fasta scores: E(): 4.7e-63, 25.8% id in 1054 aa, and to Leptospira interrogans cobalt-zinc-cadmium resistance protein CzcA CzcA4 or LA3738 SWALL:Q8EZW3 (EMBL:AE011530) (1026 aa) fasta scores: E(): 8.9e-58, 23.85% id in 1044 aa, and to Escherichia coli hypothetical protein YegO or B2076 SWALL:YEGO_ECOLI (SWALL:P76399) (1025 aa) fasta scores: E(): 1.3e-52, 23.94% id in 1044 aa; putative ABC transport system, membrane protein 3476293 3286881 BF9343_2900 Bacteroides fragilis NCTC 9343 putative ABC transport system, membrane protein YP_212600.1 3473216 R 272559 CDS YP_212601.1 60682457 3286870 complement(3476320..3477390) 1 NC_003228.3 Similar to Shewanella oneidensis conserved hypothetical protein SO4015 SWALL:Q8EA93 (EMBL:AE015832) (435 aa) fasta scores: E(): 1.1e-13, 26.74% id in 359 aa, and to Wolinella succinogenes cation efflux system CzcB2 or WS0411 SWALL:CAE09555 (EMBL:BX571658) (381 aa) fasta scores: E(): 1.1e-10, 25.29% id in 344 aa; putative ABC transport system, lipoprotein 3477390 3286870 BF9343_2901 Bacteroides fragilis NCTC 9343 putative ABC transport system, lipoprotein YP_212601.1 3476320 R 272559 CDS YP_212602.1 60682458 3286885 complement(3477789..3479477) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BTt0662 SWALL:Q8AA03 (EMBL:AE016928) (598 aa) fasta scores: E(): 1.4e-30, 38.07% id in 499 aa, and to Vibrio cholerae hypothetical protein VC0393 SWALL:Q9KUW6 (EMBL:AE004127) (597 aa) fasta scores: E(): 8.1e-08, 26.98% id in 378 aa; hypothetical protein 3479477 3286885 BF9343_2902 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212602.1 3477789 R 272559 CDS YP_212603.1 60682459 3286882 complement(3479477..3480367) 1 NC_003228.3 Similar to Chlorobium tepidum signal peptidase I LepB or CT1450 SWALL:Q8KCH1 (EMBL:AE012902) (280 aa) fasta scores: E(): 1.1e-13, 35.14% id in 276 aa, and to Coxiella burnetii signal peptidase I LepB-2 or CBU1504 SWALL:Q83BK4 (EMBL:AE016964) (256 aa) fasta scores: E(): 9.6e-06, 25.18% id in 266 aa; putative signal peptidase I 3480367 3286882 BF9343_2903 Bacteroides fragilis NCTC 9343 putative signal peptidase I YP_212603.1 3479477 R 272559 CDS YP_212604.1 60682460 3286879 complement(3480397..3481425) 1 NC_003228.3 putative lipoprotein 3481425 3286879 BF9343_2904 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212604.1 3480397 R 272559 CDS YP_212605.1 60682461 3286878 complement(3481534..3482100) 1 NC_003228.3 hypothetical protein 3482100 3286878 BF9343_2905 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212605.1 3481534 R 272559 CDS YP_212606.1 60682462 3286890 complement(3482097..3483107) 1 NC_003228.3 hypothetical protein 3483107 3286890 BF9343_2906 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212606.1 3482097 R 272559 CDS YP_212607.1 60682463 3286880 complement(3483210..3484961) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0668 SWALL:Q8A9Z7 (EMBL:AE016928) (649 aa) fasta scores: E(): 9.7e-35, 32.06% id in 602 aa; hypothetical protein 3484961 3286880 BF9343_2907 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212607.1 3483210 R 272559 CDS YP_212608.1 60682464 3286891 complement(3485071..3485259) 1 NC_003228.3 hypothetical protein 3485259 3286891 BF9343_2908 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212608.1 3485071 R 272559 CDS YP_212609.1 60682465 3286887 complement(3485345..3487276) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0668 SWALL:Q8A9Z7 (EMBL:AE016928) (649 aa) fasta scores: E(): 5.9e-97, 41.6% id in 649 aa; hypothetical protein 3487276 3286887 BF9343_2909 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212609.1 3485345 R 272559 CDS YP_212610.1 60682466 3286877 complement(3487361..3487474) 1 NC_003228.3 hypothetical protein 3487474 3286877 BF9343_2910 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212610.1 3487361 R 272559 CDS YP_212611.1 60682467 3286888 complement(3487706..3488854) 1 NC_003228.3 putative lipoprotein 3488854 3286888 BF9343_2911 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212611.1 3487706 R 272559 CDS YP_212612.1 60682468 3286857 complement(3488920..3489177) 1 NC_003228.3 hypothetical protein 3489177 3286857 BF9343_2912 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212612.1 3488920 R 272559 CDS YP_212613.1 60682469 3286889 complement(3489498..3490364) 1 NC_003228.3 hypothetical protein 3490364 3286889 BF9343_2913 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212613.1 3489498 R 272559 CDS YP_212614.1 60682470 3286886 complement(3490374..3491387) 1 NC_003228.3 hypothetical protein 3491387 3286886 BF9343_2914 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212614.1 3490374 R 272559 CDS YP_212615.1 60682471 3286858 complement(3491377..3492369) 1 NC_003228.3 hypothetical protein 3492369 3286858 BF9343_2915 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212615.1 3491377 R 272559 CDS YP_212616.1 60682472 3286854 complement(3492437..3492718) 1 NC_003228.3 hypothetical protein 3492718 3286854 BF9343_2916 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212616.1 3492437 R 272559 CDS YP_212617.1 60682473 3286893 complement(3492882..3493943) 1 NC_003228.3 putative lipoprotein 3493943 3286893 BF9343_2917 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212617.1 3492882 R 272559 CDS YP_212618.1 60682474 3286836 complement(3493953..3494162) 1 NC_003228.3 hypothetical protein 3494162 3286836 BF9343_2918 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212618.1 3493953 R 272559 CDS YP_212619.1 60682475 3286856 3494393..3495499 1 NC_003228.3 hypothetical protein 3495499 3286856 BF9343_2919 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212619.1 3494393 D 272559 CDS YP_212620.1 60682476 3286892 complement(3495985..3496371) 1 NC_003228.3 hypothetical protein 3496371 3286892 BF9343_2920 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212620.1 3495985 R 272559 CDS YP_212621.1 60682477 3286835 complement(3496537..3498303) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0240 SWALL:Q8AB71 (EMBL:AE016926) (584 aa) fasta scores: E(): 4.3e-75, 38.38% id in 594 aa, and to Bacteroides thetaiotaomicron TPR-repeat-containing protein BT3220 SWALL:Q8A2T5 (EMBL:AE016939) (578 aa) fasta scores: E(): 9.8e-28, 25.84% id in 592 aa; hypothetical protein 3498303 3286835 BF9343_2921 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212621.1 3496537 R 272559 CDS YP_212622.1 60682478 3286833 complement(3498341..3499069) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0239 SWALL:Q8AB72 (EMBL:AE016926) (244 aa) fasta scores: E(): 1.8e-58, 67.93% id in 237 aa; hypothetical protein 3499069 3286833 BF9343_2922 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212622.1 3498341 R 272559 CDS YP_212623.1 60682479 3286861 3499308..3500543 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR or BT0238 SWALL:CHUR_BACTN (SWALL:Q02550) (414 aa) fasta scores: E(): 2.8e-154, 85.85% id in 410 aa, and to Escherichia coli putative arylsulfatase regulatory protein AslB or AtsB or B3800 SWALL:ASLB_ECOLI (SWALL:P25550) (411 aa) fasta scores: E(): 5.9e-75, 45.98% id in 398 aa; putative regulatory protein 3500543 3286861 BF9343_2923 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_212623.1 3499308 D 272559 CDS YP_212624.1 60682480 3286843 3500585..3502750 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG1283 SWALL:AAQ66363 (EMBL:AE017176) (720 aa) fasta scores: E(): 8.1e-120, 46.32% id in 721 aa, and to Xylella fastidiosa hypothetical protein XF1887 SWALL:Q9PC94 (EMBL:AE004008) (716 aa) fasta scores: E(): 4.4e-62, 33.06% id in 732 aa. Note: Also highly similar to the downstream CDS BF3011 (686 aa) fasta scores: E(): 6.8e-122, 47.883% identity in 685 aa overlap; hypothetical protein 3502750 3286843 BF9343_2924 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212624.1 3500585 D 272559 CDS YP_212625.1 60682481 3286834 3502750..3504918 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG1283 SWALL:AAQ66363 (EMBL:AE017176) (720 aa) fasta scores: E(): 6.1e-126, 46.75% id in 723 aa, and to Xylella fastidiosa hypothetical protein XF1887 SWALL:Q9PC94 (EMBL:AE004008) (716 aa) fasta scores: E(): 4.2e-60, 31.08% id in 740 aa. Note: Also highly similar to the upstream CDS BF3010 (722 aa) fasta scores: E(): 7e-126, 47.883% identity in 685 aa overlap; hypothetical protein 3504918 3286834 BF9343_2925 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212625.1 3502750 D 272559 CDS YP_212626.1 60682482 3286860 complement(3505025..3505207) 1 NC_003228.3 hypothetical protein 3505207 3286860 BF9343_2926 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212626.1 3505025 R 272559 CDS YP_212627.1 60682483 3286859 complement(3505204..3506328) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0235 SWALL:Q8AB75 (EMBL:AE016926) (375 aa) fasta scores: E(): 4.7e-127, 79.2% id in 375 aa; hypothetical protein 3506328 3286859 BF9343_2927 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212627.1 3505204 R 272559 CDS YP_212628.1 60682484 3286842 complement(3506325..3507131) 1 NC_003228.3 Similar to Wolinella succinogenes hypothetical protein WS1724 SWALL:CAE10749 (EMBL:BX571661) (246 aa) fasta scores: E(): 4e-38, 45.3% id in 245 aa, and to Pseudomonas syringae Ser/Thr protein phosphatase family protein PSPTO1799 SWALL:Q885N2 (EMBL:AE016862) (273 aa) fasta scores: E(): 9.3e-37, 40.92% id in 259 aa; hypothetical protein 3507131 3286842 BF9343_2928 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212628.1 3506325 R 272559 CDS YP_212629.1 60682485 3286841 3507306..3507602 1 NC_003228.3 Similar to Corynebacterium nephridii thioredoxin C-2 SWALL:THI2_CORNE (SWALL:P07887) (107 aa) fasta scores: E(): 1.7e-13, 44.79% id in 96 aa, and to Synechocystis sp. thioredoxin-like protein SLR0233 SWALL:THI1_SYNY3 (SWALL:P52232) (105 aa) fasta scores: E(): 4.3e-13, 47.67% id in 86 aa; putative thioredoxin 3507602 3286841 BF9343_2929 Bacteroides fragilis NCTC 9343 putative thioredoxin YP_212629.1 3507306 D 272559 CDS YP_212630.1 60682486 3286838 3507660..3508079 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 thioredoxin family protein PG0275 SWALL:AAQ65495 (EMBL:AE017173) (169 aa) fasta scores: E(): 5e-20, 46.51% id in 129 aa, and to Spinacia oleracea thioredoxin M-type, chloroplast precursor SWALL:THIM_SPIOL (SWALL:P07591) (181 aa) fasta scores: E(): 6.5e-11, 32.03% id in 128 aa; putative thioredoxin family protein 3508079 3286838 BF9343_2930 Bacteroides fragilis NCTC 9343 putative thioredoxin family protein YP_212630.1 3507660 D 272559 CDS YP_212631.1 60682487 3286844 complement(3508460..3509095) 1 NC_003228.3 Similar to Methanopyrus kandleri nitroreductase NfnB or MK1490 SWALL:Q8TVA2 (EMBL:AE010439) (233 aa) fasta scores: E(): 3.2e-10, 33.33% id in 195 aa, and to Pyrococcus abyssi NADH oxidase NoxC or PYRAB02400 or PAB0163 SWALL:Q9V234 (EMBL:AJ248283) (233 aa) fasta scores: E(): 1.6e-05, 32.14% id in 196 aa; hypothetical protein 3509095 3286844 BF9343_2931 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212631.1 3508460 R 272559 CDS YP_212632.1 60682488 3286840 complement(3509233..3509790) 1 NC_003228.3 Similar to Clostridium tetani protein with rubredoxin/rubrerythrin domain CTC00826 SWALL:Q897B4 (EMBL:AE015938) (181 aa) fasta scores: E(): 1.9e-48, 73.77% id in 183 aa, and to Methanococcus jannaschii hypothetical protein MJ0746 SWALL:Y746_METJA (SWALL:Q58156) (141 aa) fasta scores: E(): 4.3e-20, 49.28% id in 140 aa; putative rubrerythrin-like protein 3509790 3286840 BF9343_2932 Bacteroides fragilis NCTC 9343 putative rubrerythrin-like protein YP_212632.1 3509233 R 272559 CDS YP_212633.1 60682489 3286839 complement(3509812..3510231) 1 NC_003228.3 Similar to Fusobacterium nucleatum ferric uptake regulation protein FN2045 SWALL:Q8RHH8 (EMBL:AE010507) (142 aa) fasta scores: E(): 1.9e-19, 43.75% id in 128 aa, and to Bacillus subtilis peroxide operon regulator PerR or BSU08730 SWALL:PERR_BACSU (SWALL:P71086) (145 aa) fasta scores: E(): 4.1e-13, 37.59% id in 133 aa; putative iron uptake-related regulatory protein 3510231 3286839 BF9343_2933 Bacteroides fragilis NCTC 9343 putative iron uptake-related regulatory protein YP_212633.1 3509812 R 272559 CDS YP_212634.1 60682490 3286851 complement(3510401..3510748) 1 NC_003228.3 Similar to Chlorobium tepidum aminopeptidase C, putative CT1580 SWALL:Q8KC46 (EMBL:AE012913) (124 aa) fasta scores: E(): 7e-22, 49.58% id in 121 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YhaI or B3104 or Z4458 or ECS3986 SWALL:YHAI_ECOLI (SWALL:P42622) (118 aa) fasta scores: E(): 7e-17, 45.61% id in 114 aa; hypothetical protein 3510748 3286851 BF9343_2934 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212634.1 3510401 R 272559 CDS YP_212635.1 60682491 3286849 complement(3510930..3513032) 1 NC_003228.3 Similar to Xylella fastidiosa peptidyl-dipeptidase XF1944 SWALL:Q9PC41 (EMBL:AE004013) (716 aa) fasta scores: E(): 6.9e-111, 43.31% id in 718 aa, and to Escherichia coli peptidyl-dipeptidase Dcp or B1538 SWALL:DCP_ECOLI (SWALL:P24171) (680 aa) fasta scores: E(): 7.8e-105, 42.03% id in 678 aa; putative peptidyl-dipeptidase 3513032 3286849 BF9343_2935 Bacteroides fragilis NCTC 9343 putative peptidyl-dipeptidase YP_212635.1 3510930 R 272559 CDS YP_212636.1 60682492 3286850 3513152..3515077 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 glutamine-dependent NAD+ synthetase NadE or PG0531 SWALL:AAQ65724 (EMBL:AE017173) (647 aa) fasta scores: E(): 7.3e-143, 55.43% id in 644 aa, and to Thermotoga maritima probable glutamine-dependent NAD NadE2 or TM1253 SWALL:NAE2_THEMA (SWALL:Q9X0Y0) (576 aa) fasta scores: E(): 5.6e-11, 26.87% id in 614 aa; putative glutamine-dependent NAD+ synthetase 3515077 3286850 BF9343_2936 Bacteroides fragilis NCTC 9343 putative glutamine-dependent NAD+ synthetase YP_212636.1 3513152 D 272559 CDS YP_212637.1 60682493 3286847 3515147..3515683 1 NC_003228.3 hypothetical protein 3515683 3286847 BF9343_2937 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212637.1 3515147 D 272559 CDS YP_212638.1 60682494 3286846 3515789..3518944 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0317 SWALL:Q8AAZ5 (EMBL:AE016927) (1062 aa) fasta scores: E(): 2.8e-49, 30.97% id in 1130 aa, and to Bacteroides fragilis FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 9.3e-21, 23.37% id in 1125 aa; hypothetical protein 3518944 3286846 BF9343_2938 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212638.1 3515789 D 272559 CDS YP_212639.1 60682495 3286794 3518975..3520447 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1047 SWALL:Q8A8X0 (EMBL:AE016930) (514 aa) fasta scores: E(): 5.6e-11, 23.04% id in 538 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2259 SWALL:Q8A5I0 (EMBL:AE016935) (488 aa) fasta scores: E(): 1.3e-10, 26.34% id in 501 aa; hypothetical protein 3520447 3286794 BF9343_2939 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212639.1 3518975 D 272559 CDS YP_212640.1 60682496 3286848 3520480..3521484 1 NC_003228.3 Similar to Clostridium acetobutylicum predicted phosphohydrolase, Icc family CAC2806 SWALL:Q97FD4 (EMBL:AE007778) (317 aa) fasta scores: E(): 1.3e-28, 35.69% id in 325 aa, and to Dictyostelium discoideum hypothetical protein SWALL:Q8T198 (EMBL:AC116956) (426 aa) fasta scores: E(): 1.3e-25, 32.09% id in 324 aa; hypothetical protein 3521484 3286848 BF9343_2940 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212640.1 3520480 D 272559 CDS YP_212641.1 60682497 3289224 complement(3521623..3522747) 1 NC_003228.3 Similar to Escherichia coli histidine biosynthesis bifunctional protein HisB [includes: histidinol-phosphatase; imidazoleglycerol-phosphate dehydratase] or B2022 SWALL:HIS7_ECOLI (SWALL:P06987) (355 aa) fasta scores: E(): 6.2e-38, 45.33% id in 375 aa, and to Pasteurella multocida histidine biosynthesis bifunctional protein HisB [includes: histidinol-phosphatase; imidazoleglycerol-phosphate dehydratase] or PM1200 SWALL:HIS7_PASMU (SWALL:P57920) (363 aa) fasta scores: E(): 2.3e-58, 50.26% id in 376 aa; putative histidine biosynthesis bifunctional protein 3522747 hisB 3289224 hisB Bacteroides fragilis NCTC 9343 putative histidine biosynthesis bifunctional protein YP_212641.1 3521623 R 272559 CDS YP_212642.1 60682498 3286791 complement(3522753..3523790) 1 NC_003228.3 Similar to Xanthomonas axonopodis histidinol-phosphate aminotransferase HisC or XAC1830 SWALL:HIS8_XANAC (SWALL:P58891) (363 aa) fasta scores: E(): 8.2e-38, 35.57% id in 357 aa, and to Escherichia coli histidinol-phosphate aminotransferase HisC or B2021 SWALL:HIS8_ECOLI (SWALL:P06986) (356 aa) fasta scores: E(): 1.4e-36, 36.13% id in 357 aa; putative histidine biosynthesis-related aminotransferase 3523790 3286791 BF9343_2942 Bacteroides fragilis NCTC 9343 putative histidine biosynthesis-related aminotransferase YP_212642.1 3522753 R 272559 CDS YP_212643.1 60682499 3289178 complement(3523787..3525073) 1 NC_003228.3 Similar to Escherichia coli histidinol dehydrogenase HisD or B2020 SWALL:HISX_ECOLI (SWALL:P06988) (433 aa) fasta scores: E(): 3.4e-76, 52.25% id in 421 aa, and to Salmonella typhimurium histidinol dehydrogenase HisD or STM2072 SWALL:HISX_SALTY (SWALL:P10370) (433 aa) fasta scores: E(): 4.2e-75, 52.01% id in 421 aa; putative histidinol dehydrogenase 3525073 hisD 3289178 hisD Bacteroides fragilis NCTC 9343 putative histidinol dehydrogenase YP_212643.1 3523787 R 272559 CDS YP_212644.1 60682500 3289239 complement(3525109..3525960) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 ATP phosphoribosyltransferase HisG or B2019 or C2546 SWALL:HIS1_ECOLI (SWALL:P10366) (299 aa) fasta scores: E(): 1e-30, 46.23% id in 292 aa, and to Campylobacter jejuni ATP phosphoribosyltransferase HisG or CJ1597 SWALL:HIS1_CAMJE (SWALL:Q9PM78) (299 aa) fasta scores: E(): 5.7e-32, 47.26% id in 292 aa; putative histidine biosynthesis ATP phosphoribosyltransferase 3525960 hisG 3289239 hisG Bacteroides fragilis NCTC 9343 putative histidine biosynthesis ATP phosphoribosyltransferase YP_212644.1 3525109 R 272559 CDS YP_212645.1 60682501 3289360 complement(3526208..3526699) 1 NC_003228.3 Only significantly similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0199 SWALL:Q8ABB1 (EMBL:AE016926) (163 aa) fasta scores: E(): 1.2e-60, 84.04% id in 163 aa; putative thioesterase 3526699 3289360 BF9343_2945 Bacteroides fragilis NCTC 9343 putative thioesterase YP_212645.1 3526208 R 272559 CDS YP_212646.1 60682502 3286845 3526821..3527528 1 NC_003228.3 Similar to Bordetella pertussis hypothetical protein BP1600 SWALL:CAE41889 (EMBL:BX640415) (232 aa) fasta scores: E(): 3.5e-31, 40.78% id in 228 aa, and to Escherichia coli protein YhhW or B3439 SWALL:YHHW_ECOLI (SWALL:P46852) (231 aa) fasta scores: E(): 8.2e-29, 36.68% id in 229 aa; putative Pirin-like protein 3527528 3286845 BF9343_2946 Bacteroides fragilis NCTC 9343 putative Pirin-like protein YP_212646.1 3526821 D 272559 CDS YP_212647.1 60682503 3289379 complement(3527613..3529622) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 thiol:disulfide interchange protein DsbD, putative PG1704 SWALL:AAQ66715 (EMBL:AE017177) (682 aa) fasta scores: E(): 2.1e-151, 61.13% id in 669 aa, and to Pseudomonas aeruginosa thiol:disulfide interchange protein dsbd 1 precursor DsbD1 or DipZ or PA4845 SWALL:DSD1_PSEAE (SWALL:Q9HUW5) (591 aa) fasta scores: E(): 9.7e-14, 26.85% id in 417 aa; putative exported cytochrome C biogenesis-related protein 3529622 3289379 BF9343_2947 Bacteroides fragilis NCTC 9343 putative exported cytochrome C biogenesis-related protein YP_212647.1 3527613 R 272559 CDS YP_212648.1 60682504 3286790 complement(3529723..3530022) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0652 SWALL:AAQ65831 (EMBL:AE017174) (100 aa) fasta scores: E(): 3.4e-10, 41.41% id in 99 aa, and to Clostridium perfringens hypothetical protein CPE0853 SWALL:Q8XM37 (EMBL:AP003188) (100 aa) fasta scores: E(): 2.6e-09, 38.38% id in 99 aa; hypothetical protein 3530022 3286790 BF9343_2948 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212648.1 3529723 R 272559 CDS YP_212649.1 60682505 3286104 3530124..3530738 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri uridine kinase Udk or B2066 or C2593 or Z3234 or ECS2873 or SF2130 or S2254 SWALL:URK_ECOLI (SWALL:P31218) (213 aa) fasta scores: E(): 3.5e-32, 48.51% id in 202 aa, and to Bacillus subtilis uridine kinase Udk or BSU27330 SWALL:URK_BACSU (SWALL:O32033) (211 aa) fasta scores: E(): 2.3e-38, 52.79% id in 197 aa; putative uridine kinase 3530738 udk 3286104 udk Bacteroides fragilis NCTC 9343 putative uridine kinase YP_212649.1 3530124 D 272559 CDS YP_212650.1 60682506 3286798 3530735..3532126 1 NC_003228.3 Similar to Pseudomonas putida hypothetical protein SWALL:Q9X3V4 (EMBL:AF086638) (485 aa) fasta scores: E(): 1.8e-30, 30.67% id in 427 aa, and to Yersinia pestis putative membrane protein YPO2922 SWALL:Q8ZCQ1 (EMBL:AJ414154) (486 aa) fasta scores: E(): 8.8e-28, 30.82% id in 425 aa; putative exported transglycosylase protein 3532126 3286798 BF9343_2950 Bacteroides fragilis NCTC 9343 putative exported transglycosylase protein YP_212650.1 3530735 D 272559 CDS YP_212651.1 60682507 3286853 complement(3532186..3533739) 1 NC_003228.3 Similar to Methanobacterium thermoautotrophicum sodium/proline symporter MTH1856 SWALL:O27884 (EMBL:AE000938) (526 aa) fasta scores: E(): 1.4e-107, 50.19% id in 514 aa, and to Bacillus subtilis osmoregulated proline transporter OpuE or BSU06660 SWALL:OPUE_BACSU (SWALL:O06493) (492 aa) fasta scores: E(): 6.2e-13, 27.87% id in 452 aa; putative sodium/proline symporter membrane protein 3533739 3286853 BF9343_2951 Bacteroides fragilis NCTC 9343 putative sodium/proline symporter membrane protein YP_212651.1 3532186 R 272559 CDS YP_212652.1 60682508 3286852 complement(3534015..3534620) 1 NC_003228.3 Similar to Methanosarcina mazei NADPH-flavin oxidoreductase MM1584 SWALL:Q8PWK1 (EMBL:AE013392) (174 aa) fasta scores: E(): 2.3e-27, 43.97% id in 166 aa, and to Archaeoglobus fulgidus putative NADH dehydrogenase/NAD(P)H nitroreductase AF2267 SWALL:YM67_ARCFU (SWALL:O28017) (174 aa) fasta scores: E(): 2.9e-23, 40.58% id in 170 aa; putative nitroreductase 3534620 3286852 BF9343_2952 Bacteroides fragilis NCTC 9343 putative nitroreductase YP_212652.1 3534015 R 272559 CDS YP_212653.1 60682509 3289244 complement(3534635..3537385) 1 NC_003228.3 Similar to Escherichia coli 5-methyltetrahydrofolate--homocysteine methyltransferase MetH or B4019 SWALL:METH_ECOLI (SWALL:P13009) (1226 aa) fasta scores: E(): 9.9e-192, 57.85% id in 904 aa, and to Vibrio cholerae 5-methyltetrahydrofolate--homocysteine methyltransferase VC0390 SWALL:Q9KUW9 (EMBL:AE004127) (1226 aa) fasta scores: E(): 3.2e-196, 58.06% id in 918 aa; putative 5-methyltetrahydrofolate--homocysteine methyltransferase 3537385 metH 3289244 metH Bacteroides fragilis NCTC 9343 putative 5-methyltetrahydrofolate--homocysteine methyltransferase YP_212653.1 3534635 R 272559 CDS YP_212654.1 60682510 3286795 complement(3537405..3537857) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 SsrA-binding protein SmpB or PG0502 SWALL:AAQ65696 (EMBL:AE017173) (153 aa) fasta scores: E(): 7.7e-43, 74.48% id in 145 aa, and to Streptomyces coelicolor SsrA-binding protein SmpB or SCO2966 or SCE59.25c SWALL:SSRP_STRCO (SWALL:Q9L1S9) (138 aa) fasta scores: E(): 2.4e-26, 52.17% id in 138 aa; putative SsrA-binding protein 3537857 3286795 BF9343_2954 Bacteroides fragilis NCTC 9343 putative SsrA-binding protein YP_212654.1 3537405 R 272559 CDS YP_212655.1 60682511 3286796 complement(3537867..3538409) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0178 SWALL:Q8ABD2 (EMBL:AE016926) (181 aa) fasta scores: E(): 1.9e-58, 79.55% id in 181 aa; hypothetical protein 3538409 3286796 BF9343_2955 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212655.1 3537867 R 272559 CDS YP_212656.1 60682512 3286804 complement(3538441..3539244) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0177 SWALL:Q8ABD3 (EMBL:AE016926) (263 aa) fasta scores: E(): 3e-14, 31.76% id in 255 aa; putative lipoprotein 3539244 3286804 BF9343_2956 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212656.1 3538441 R 272559 CDS YP_212657.1 60682513 3286797 complement(3539327..3539827) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0176 SWALL:Q8ABD4 (EMBL:AE016926) (162 aa) fasta scores: E(): 2.8e-55, 90.06% id in 161 aa; Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0176 SWALL:Q8ABD4 (EMBL:AE016926) (162 aa) fasta scores: E(): 2.8e-55, 90.06% id in 161 aa; hypothetical protein 3539827 3286797 BF9343_2957 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212657.1 3539327 R 272559 CDS YP_212658.1 60682514 3286793 complement(3540366..3540770) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0175 SWALL:Q8ABD5 (EMBL:AE016926) (134 aa) fasta scores: E(): 2.7e-46, 81.2% id in 133 aa, and to Clostridium perfringens hypothetical protein CPE2601 SWALL:Q8XH84 (EMBL:AP003194) (123 aa) fasta scores: E(): 1.7e-20, 48.33% id in 120 aa; hypothetical protein 3540770 3286793 BF9343_2958 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212658.1 3540366 R 272559 CDS YP_212659.1 60682515 3286792 3541010..3541711 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0174 SWALL:Q8ABD6 (EMBL:AE016926) (233 aa) fasta scores: E(): 8.7e-89, 97.85% id in 233 aa, and to Clostridium perfringens hypothetical protein CPE1233 SWALL:Q8XL09 (EMBL:AP003189) (232 aa) fasta scores: E(): 1.4e-72, 78.97% id in 233 aa; hypothetical protein 3541711 3286792 BF9343_2959 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212659.1 3541010 D 272559 CDS YP_212660.1 60682516 3286802 3541732..3542742 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0173 SWALL:Q8ABD7 (EMBL:AE016926) (336 aa) fasta scores: E(): 1.5e-126, 98.21% id in 336 aa, and to Clostridium perfringens hypothetical protein CPE1232 SWALL:Q8XL10 (EMBL:AP003189) (333 aa) fasta scores: E(): 1.4e-99, 80.3% id in 330 aa; hypothetical protein 3542742 3286802 BF9343_2960 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212660.1 3541732 D 272559 CDS YP_212661.1 60682517 3286801 3543244..3544257 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 3-oxoacyl-(acyl-carrier-protein) synthase III FabH or PG2141 SWALL:AAQ67094 (EMBL:AE017179) (335 aa) fasta scores: E(): 1.4e-77, 57.05% id in 333 aa, and to Chlorobium tepidum 3-oxoacyl-[acyl-carrier-protein] synthase III FabH or CT2114 SWALL:FABH_CHLTE (SWALL:Q8KAP2) (329 aa) fasta scores: E(): 2.1e-62, 50.61% id in 328 aa; putative 3-oxoacyl-(acyl-carrier-protein) synthase III 3544257 3286801 BF9343_2961 Bacteroides fragilis NCTC 9343 putative 3-oxoacyl-(acyl-carrier-protein) synthase III YP_212661.1 3543244 D 272559 CDS YP_212662.1 60682518 3286803 3544364..3545809 1 NC_003228.3 Similar to Bacillus amyloliquefaciens alpha-amylase precursor SWALL:AMY_BACAM (SWALL:P00692) (514 aa) fasta scores: E(): 2.5e-100, 50.51% id in 483 aa, and to Bacillus megaterium alpha-amylase SWALL:Q9AQ54 (EMBL:AF220440) (533 aa) fasta scores: E(): 5.7e-105, 51.24% id in 484 aa; putative alpha-amylase precursor 3545809 3286803 BF9343_2962 Bacteroides fragilis NCTC 9343 putative alpha-amylase precursor YP_212662.1 3544364 D 272559 CDS YP_212663.1 60682519 3286799 3545811..3546746 1 NC_003228.3 Similar to Anabaena sp. hypothetical protein ALR3393 SWALL:Q8YRQ1 (EMBL:AP003592) (314 aa) fasta scores: E(): 5e-34, 34.55% id in 301 aa, and to Bordetella pertussis serum resistance protein BrkB or BP3493 SWALL:CAE43754 (EMBL:BX640421) (296 aa) fasta scores: E(): 1e-23, 32.15% id in 255 aa; putative ribonuclease 3546746 3286799 BF9343_2963 Bacteroides fragilis NCTC 9343 putative ribonuclease YP_212663.1 3545811 D 272559 CDS YP_212664.1 60682520 3286815 complement(3546761..3547081) 1 NC_003228.3 hypothetical protein 3547081 3286815 BF9343_2964 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212664.1 3546761 R 272559 CDS YP_212665.1 60682521 3286814 3548561..3550627 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcription termination factor rho BT1595 SWALL:Q8A7C9 (EMBL:AE016932) (722 aa) fasta scores: E(): 1.6e-113, 77.71% id in 736 aa, and to Porphyromonas gingivalis W83 transcription termination factor rho Rho or PG0332 SWALL:AAQ65545 (EMBL:AE017173) (658 aa) fasta scores: E(): 1.4e-88, 56.2% id in 701 aa; putative transcription termination factor 3550627 3286814 BF9343_2966 Bacteroides fragilis NCTC 9343 putative transcription termination factor YP_212665.1 3548561 D 272559 CDS YP_212666.1 60682522 3287992 3550759..3552609 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT1800 SWALL:Q8A6S6 (EMBL:AE016933) (616 aa) fasta scores: E(): 2.9e-103, 49.18% id in 614 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT1598 SWALL:Q8A7C6 (EMBL:AE016932) (655 aa) fasta scores: E(): 3.6e-37, 27.11% id in 590 aa; putative two-component system sensor histidine kinase 3552609 3287992 BF9343_2967 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase YP_212666.1 3550759 D 272559 CDS YP_212667.1 60682523 3286807 3552606..3554561 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT1598 SWALL:Q8A7C6 (EMBL:AE016932) (655 aa) fasta scores: E(): 9.9e-124, 50.53% id in 651 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1801 SWALL:Q8A6S5 (EMBL:AE016933) (653 aa) fasta scores: E(): 8.3e-84, 38.77% id in 655 aa; putative two-component system sensor histidine kinase 3554561 3286807 BF9343_2968 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase YP_212667.1 3552606 D 272559 CDS YP_212668.1 60682524 3286816 3554636..3555958 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron BexA SWALL:Q93HR0 (EMBL:AB067769) (443 aa) fasta scores: E(): 1.5e-81, 48.06% id in 439 aa, and to Fusobacterium nucleatum Na+ driven multidrug efflux pump FN1789 SWALL:Q8RI46 (EMBL:AE010481) (459 aa) fasta scores: E(): 1.6e-22, 24.08% id in 436 aa; putative antiporter membrane protein 3555958 3286816 BF9343_2969 Bacteroides fragilis NCTC 9343 putative antiporter membrane protein YP_212668.1 3554636 D 272559 CDS YP_212669.1 60682525 3285345 3556110..3557429 1 NC_003228.3 Similar to Bacillus subtilis signal recognition particle protein Ffh or BSU15980 SWALL:SR54_BACSU (SWALL:P37105) (446 aa) fasta scores: E(): 1.4e-78, 55.17% id in 435 aa, and to Porphyromonas gingivalis W83 signal recognition particle protein Ffh or PG1115 SWALL:AAQ66225 (EMBL:AE017175) (445 aa) fasta scores: E(): 2e-115, 80.85% id in 444 aa; signal recognition particle protein 3557429 ffh 3285345 ffh Bacteroides fragilis NCTC 9343 signal recognition particle protein YP_212669.1 3556110 D 272559 CDS YP_212670.1 60682526 3286813 3557834..3558919 1 NC_003228.3 Full length similarity to Bacteroides thetaiotaomicron thiol:disulfide interchange protein BT1292 SWALL:Q8A882 (EMBL:AE016931) (366 aa) fasta scores: E(): 2.7e-31, 30.54% id in 370 aa, and only C-terminal region similar to Bacillus subtilis thiol-disulfide oxidoreductase ResA or BSU23150 SWALL:RESA_BACSU (SWALL:P35160) (179 aa) fasta scores: E(): 2.6e-09, 25.49% id in 153 aa; putative thiol:disulfide oxidoreductase 3558919 3286813 BF9343_2971 Bacteroides fragilis NCTC 9343 putative thiol:disulfide oxidoreductase YP_212670.1 3557834 D 272559 CDS YP_212671.1 60682527 3286810 3558939..3559820 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD or PG1116 SWALL:AAQ66226 (EMBL:AE017175) (296 aa) fasta scores: E(): 1.3e-80, 73.42% id in 286 aa, and to Homo sapiens bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial precursor MthFD2 or NmdMC SWALL:MTDC_HUMAN (SWALL:P13995) (344 aa) fasta scores: E(): 7.7e-47, 48.81% id in 295 aa; putative methenyltetrahydrofolate cyclohydrolase 3559820 3286810 BF9343_2972 Bacteroides fragilis NCTC 9343 putative methenyltetrahydrofolate cyclohydrolase YP_212671.1 3558939 D 272559 CDS YP_212672.1 60682528 3286822 3559888..3561519 1 NC_003228.3 Very low similarity to Porphyromonas gingivalis W83 thioredoxin family protein PG1638 SWALL:AAQ66661 (EMBL:AE017177) (328 aa) fasta scores: E(): 8.3e-10, 27.05% id in 255 aa, and to Bacillus anthracis thiol-disulfide oxidoreductase ResA or BA1494 SWALL:RESA_BACAA (SWALL:Q81SZ9) (173 aa) fasta scores: E(): 2.9e-05, 23.71% id in 156 aa; hypothetical protein 3561519 3286822 BF9343_2973 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212672.1 3559888 D 272559 CDS YP_212673.1 60682529 3286805 3561532..3562650 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 capa protein, putative PG1312 SWALL:AAQ66384 (EMBL:AE017176) (395 aa) fasta scores: E(): 7.1e-47, 43.51% id in 370 aa, and to Bacillus cereus capsule biosynthesis protein CapA BC3308 SWALL:Q81B78 (EMBL:AE017008) (411 aa) fasta scores: E(): 1.6e-28, 36.42% id in 280 aa; hypothetical protein 3562650 3286805 BF9343_2974 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212673.1 3561532 D 272559 CDS YP_212674.1 60682530 3286820 complement(3562995..3564023) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3625 SWALL:Q8A1N4 (EMBL:AE016941) (344 aa) fasta scores: E(): 1.7e-76, 55.39% id in 343 aa; hypothetical protein 3564023 3286820 BF9343_2975 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212674.1 3562995 R 272559 CDS YP_212675.1 60682531 3286806 complement(3564057..3564728) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3626 SWALL:Q8A1N3 (EMBL:AE016941) (222 aa) fasta scores: E(): 1.3e-56, 62.16% id in 222 aa; hypothetical protein 3564728 3286806 BF9343_2976 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212675.1 3564057 R 272559 CDS YP_212676.1 60682532 3286821 complement(3564754..3565641) 1 NC_003228.3 Similar to Rhodopirellula baltica probable transport ATP-binding protein RBb1866 SWALL:CAD72305 (EMBL:BX294136) (335 aa) fasta scores: E(): 1.7e-20, 32.44% id in 299 aa, and to Bacillus licheniformis bacitracin transport ATP-binding protein BcrA SWALL:BCRA_BACLI (SWALL:P42332) (306 aa) fasta scores: E(): 1e-17, 31.57% id in 304 aa; putative ABC transport system, ATP-binding protein 3565641 3286821 BF9343_2977 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_212676.1 3564754 R 272559 CDS YP_212677.1 60682533 3288828 complement(3565669..3566244) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3628 SWALL:Q8A1N1 (EMBL:AE016941) (188 aa) fasta scores: E(): 4.2e-49, 66.29% id in 181 aa; hypothetical protein 3566244 3288828 BF9343_2978 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212677.1 3565669 R 272559 CDS YP_212678.1 60682534 3286817 complement(3566228..3566812) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3629 SWALL:Q8A1N0 (EMBL:AE016941) (195 aa) fasta scores: E(): 1.6e-50, 68.94% id in 190 aa; putative lipoprotein 3566812 3286817 BF9343_2979 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212678.1 3566228 R 272559 CDS YP_212679.1 60682535 3286819 complement(3566834..3568408) 1 NC_003228.3 hypothetical protein 3568408 3286819 BF9343_2980 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212679.1 3566834 R 272559 CDS YP_212680.1 60682536 3286818 complement(3568423..3569637) 1 NC_003228.3 Only significantly similar to Porphyromonas gingivalis W83 lipoprotein, putative PG1019 SWALL:AAQ66139 (EMBL:AE017175) (393 aa) fasta scores: E(): 1.3e-19, 27.83% id in 406 aa; putative lipoprotein 3569637 3286818 BF9343_2981 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212680.1 3568423 R 272559 CDS YP_212681.1 60682537 3286827 complement(3569664..3572402) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane receptor BT1939 SWALL:Q8A6E5 (EMBL:AE016934) (953 aa) fasta scores: E(): 4.5e-13, 25.99% id in 985 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1020 SWALL:AAQ66140 (EMBL:AE017175) (936 aa) fasta scores: E(): 8.9e-12, 30.13% id in 939 aa; hypothetical protein 3572402 3286827 BF9343_2982 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212681.1 3569664 R 272559 CDS YP_212682.1 60682538 3286826 complement(3572513..3572653) 1 NC_003228.3 Doubtful CDS. No significant database matches; hypothetical protein 3572653 3286826 BF9343_2983 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212682.1 3572513 R 272559 CDS YP_212683.1 60682539 3286823 complement(3572771..3573751) 1 NC_003228.3 Low similarity to Bacteroides thetaiotaomicron conserved hypothetical protein BT1007 SWALL:Q8A910 (EMBL:AE016930) (263 aa) fasta scores: E(): 2.9e-17, 36.44% id in 321 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0419 SWALL:AAQ65620 (EMBL:AE017173) (301 aa) fasta scores: E(): 6.2e-11, 35.85% id in 251 aa; hypothetical protein 3573751 3286823 BF9343_2984 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212683.1 3572771 R 272559 CDS YP_212684.1 60682540 3286828 complement(3573852..3575696) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 DNA polymerase III, gamma and tau subunits DnaX or PG1418 SWALL:AAQ66472 (EMBL:AE017176) (602 aa) fasta scores: E(): 1.4e-78, 48.15% id in 623 aa, and to Bacillus subtilis DNA polymerase III subunit gamma/tau DnaX or DnaH or BSU00190 SWALL:DP3X_BACSU (SWALL:P09122) (563 aa) fasta scores: E(): 1.5e-42, 37.77% id in 413 aa; putative DNA polymerase III 3575696 3286828 BF9343_2985 Bacteroides fragilis NCTC 9343 putative DNA polymerase III YP_212684.1 3573852 R 272559 CDS YP_212685.1 60682541 3286825 3575844..3576146 1 NC_003228.3 putative septum formation initiator-related protein 3576146 3286825 BF9343_2986 Bacteroides fragilis NCTC 9343 putative septum formation initiator-related protein YP_212685.1 3575844 D 272559 CDS YP_212686.1 60682542 3286824 3576143..3576487 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1612 SWALL:Q8A7B3 (EMBL:AE016932) (113 aa) fasta scores: E(): 1e-36, 88.28% id in 111 aa; hypothetical protein 3576487 3286824 BF9343_2987 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212686.1 3576143 D 272559 CDS YP_212687.1 60682543 3289349 complement(3576556..3576963) 1 NC_003228.3 Similar to Ralstonia solanacearum hypothetical transmembrane protein RSP0211 or RS05215 SWALL:Q8XTA3 (EMBL:AL646077) (150 aa) fasta scores: E(): 2.8e-10, 33.58% id in 131 aa, and to Chlorobium tepidum hypothetical protein CT1218 SWALL:Q8KD37 (EMBL:AE012882) (157 aa) fasta scores: E(): 2.9e-10, 33.82% id in 136 aa; hypothetical protein 3576963 3289349 BF9343_2988 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212687.1 3576556 R 272559 CDS YP_212688.1 60682544 3289424 complement(3576977..3579019) 1 NC_003228.3 Only low similarity to Porphyromonas gingivalis W83 hypothetical protein PG2226 SWALL:AAQ67166 (EMBL:AE017179) (740 aa) fasta scores: E(): 3.4e-10, 26.12% id in 643 aa; hypothetical protein 3579019 3289424 BF9343_2989 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212688.1 3576977 R 272559 CDS YP_212689.1 60682545 3286829 complement(3579023..3579922) 1 NC_003228.3 hypothetical protein 3579922 3286829 BF9343_2990 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212689.1 3579023 R 272559 CDS YP_212690.1 60682546 3289357 complement(3580066..3580662) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1613 SWALL:Q8A7B2 (EMBL:AE016932) (193 aa) fasta scores: E(): 3e-41, 69.58% id in 194 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0535 SWALL:AAQ65727 (EMBL:AE017173) (206 aa) fasta scores: E(): 6.3e-13, 29.68% id in 192 aa; hypothetical protein 3580662 3289357 BF9343_2991 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212690.1 3580066 R 272559 CDS YP_212691.1 60682547 3286830 complement(3580699..3580932) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1614 SWALL:Q8A7B1 (EMBL:AE016932) (77 aa) fasta scores: E(): 4.5e-22, 85.71% id in 77 aa; hypothetical protein 3580932 3286830 BF9343_2992 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212691.1 3580699 R 272559 CDS YP_212692.1 60682548 3289182 3581094..3582560 1 NC_003228.3 Similar to Escherichia coli aminoacyl-histidine dipeptidase PepD or PepH or B0237 SWALL:PEPD_ECOLI (SWALL:P15288) (484 aa) fasta scores: E(): 1e-84, 45.47% id in 486 aa, and to Porphyromonas gingivalis W83 aminoacyl-histidine dipeptidase PepD-2 or PG0537 SWALL:AAQ65729 (EMBL:AE017173) (486 aa) fasta scores: E(): 9.7e-116, 61.31% id in 486 aa; putative aminoacyl-histidine dipeptidase 3582560 pepD 3289182 pepD Bacteroides fragilis NCTC 9343 putative aminoacyl-histidine dipeptidase YP_212692.1 3581094 D 272559 CDS YP_212693.1 60682549 3286786 3582728..3583762 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1616 SWALL:Q8A7A9 (EMBL:AE016932) (373 aa) fasta scores: E(): 8e-91, 67.37% id in 331 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0605 SWALL:AAQ65789 (EMBL:AE017174) (413 aa) fasta scores: E(): 1.8e-42, 40.89% id in 335 aa; putative conserved exported protein 3583762 3286786 BF9343_2994 Bacteroides fragilis NCTC 9343 putative conserved exported protein YP_212693.1 3582728 D 272559 CDS YP_212694.1 60682550 3286832 complement(3583747..3584916) 1 NC_003228.3 Similar to Pseudomonas syringae mechanosensitive ion channel family protein PSPTO1574 SWALL:Q886K5 (EMBL:AE016861) (436 aa) fasta scores: E(): 3.2e-34, 34.47% id in 409 aa, and to Yersinia pestis putative membrane protein YPO2470 or Y1720 SWALL:Q8ZDT6 (EMBL:AJ414152) (415 aa) fasta scores: E(): 4.1e-34, 34.65% id in 404 aa; hypothetical protein 3584916 3286832 BF9343_2995 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212694.1 3583747 R 272559 CDS YP_212695.1 60682551 3287206 complement(3585055..3585711) 1 NC_003228.3 Similar to Bacillus subtilis transaldolase Tal or BSU37110 SWALL:TAL_BACSU (SWALL:P19669) (212 aa) fasta scores: E(): 4.6e-40, 52.09% id in 215 aa, and to Porphyromonas gingivalis W83 transaldolase TalC, putative PG0230 SWALL:AAQ65460 (EMBL:AE017172) (220 aa) fasta scores: E(): 3.2e-65, 77.52% id in 218 aa; putative transaldolase 3585711 tal 3287206 tal Bacteroides fragilis NCTC 9343 putative transaldolase YP_212695.1 3585055 R 272559 CDS YP_212696.1 60682552 3286702 complement(3585777..3587594) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 alpha-1,3/4-fucosidase, putative PG1750 SWALL:AAQ66752 (EMBL:AE017178) (606 aa) fasta scores: E(): 3.7e-160, 62.89% id in 601 aa, and to Clostridium perfringens hypothetical protein CPE1876 SWALL:Q8XJ85 (EMBL:AP003192) (750 aa) fasta scores: E(): 3.9e-49, 45.96% id in 459 aa; putative exported fucosidase 3587594 3286702 BF9343_2997 Bacteroides fragilis NCTC 9343 putative exported fucosidase YP_212696.1 3585777 R 272559 CDS YP_212697.1 60682553 3288500 complement(3587644..3590706) 1 NC_003228.3 Similar to Clostridium acetobutylicum beta-galactosidase CbgA SWALL:BGAL_CLOAB (SWALL:P24131) (897 aa) fasta scores: E(): 1.2e-90, 33.47% id in 932 aa, and to Escherichia coli beta-galactosidase LacZ or B0344 SWALL:BGAL_ECOLI (SWALL:P00722) (1023 aa) fasta scores: E(): 1.1e-75, 34.23% id in 1040 aa; putative exported beta-galactosidase 3590706 3288500 BF9343_2998 Bacteroides fragilis NCTC 9343 putative exported beta-galactosidase YP_212697.1 3587644 R 272559 CDS YP_212698.1 60682554 3286784 complement(3590784..3593099) 1 NC_003228.3 Similar to Alteromonas sp. beta-N-acetylhexosaminidase Hex86 SWALL:Q8VUM1 (EMBL:AB067646) (761 aa) fasta scores: E(): 3.6e-78, 34.29% id in 726 aa, and to Vibrio furnissii beta-hexosaminidase ExoI SWALL:HEX1_VIBFU (SWALL:P96155) (611 aa) fasta scores: E(): 2.7e-52, 35.62% id in 494 aa; putative exported glycosyl hydrolase 3593099 3286784 BF9343_2999 Bacteroides fragilis NCTC 9343 putative exported glycosyl hydrolase YP_212698.1 3590784 R 272559 CDS YP_212699.1 60682555 3286783 complement(3593144..3594730) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron mucin-desulfating sulfatase BT3177 SWALL:Q8A2X8 (EMBL:AE016939) (522 aa) fasta scores: E(): 2.3e-190, 88.56% id in 516 aa, and to Prevotella sp. RS2 mucin-desulfating sulfatase MdsA precursor SWALL:Q9L5W0 (EMBL:AF248951) (517 aa) fasta scores: E(): 5.5e-91, 47.01% id in 502 aa; putative exported sulfatase 3594730 3286783 BF9343_3000 Bacteroides fragilis NCTC 9343 putative exported sulfatase YP_212699.1 3593144 R 272559 CDS YP_212700.1 60682556 3288566 3595142..3596608 1 NC_003228.3 Similar to Rhodopirellula baltica N-acetylgalactosamine 6-sulfate sulfatase AslA or RB11123 SWALL:CAD77174 (EMBL:BX294152) (491 aa) fasta scores: E(): 2.9e-62, 39.96% id in 503 aa, and to Escherichia coli O6 hypothetical protein C0022 SWALL:Q8FLC3 (EMBL:AE016755) (509 aa) fasta scores: E(): 2.7e-35, 31.89% id in 511 aa; putative exported sulfatase 3596608 3288566 BF9343_3001 Bacteroides fragilis NCTC 9343 putative exported sulfatase YP_212700.1 3595142 D 272559 CDS YP_212701.1 60682557 3286785 complement(3596731..3598380) 1 NC_003228.3 Similar to Bacteroides fragilis strain YCH46 beta-N-acetylhexosaminidase NahB SWALL:Q84ID8 (EMBL:AB102772) (747 aa) fasta scores: E(): 1.2e-88, 49.81% id in 530 aa, and to Porphyromonas gingivalis beta-hexosaminidase precursor NahA SWALL:HEXA_PORGI (SWALL:P49008) (777 aa) fasta scores: E(): 2.1e-58, 42.29% id in 506 aa. Note: This CDS is shorte in its C-terminal region than its database matches; putative exported hexosaminidase 3598380 3286785 BF9343_3002 Bacteroides fragilis NCTC 9343 putative exported hexosaminidase YP_212701.1 3596731 R 272559 CDS YP_212702.1 60682558 3286782 3598557..3601481 1 NC_003228.3 Similar to Xanthomonas campestris histidine kinase/response regulator hybrid protein XCC2847 SWALL:Q8P6W8 (EMBL:AE012397) (1180 aa) fasta scores: E(): 4.3e-24, 22.8% id in 842 aa, and to Xylella fastidiosa histidine kinase/response regulator hybrid protein PD0576 SWALL:Q87DV4 (EMBL:AE012555) (1190 aa) fasta scores: E(): 2.3e-20, 23.43% id in 879 aa; putative two-component system histidine kinase/response regulator fusion protein 3601481 3286782 BF9343_3003 Bacteroides fragilis NCTC 9343 putative two-component system histidine kinase/response regulator fusion protein YP_212702.1 3598557 D 272559 CDS YP_212703.1 60682559 3285350 complement(3601557..3602609) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 fructose-bisphosphate aldolase class I FbaB or DhnA or B2097 or C2623 SWALL:ALF1_ECOLI (SWALL:P71295) (349 aa) fasta scores: E(): 1.7e-91, 65.41% id in 347 aa, and to Chlamydophila caviae fructose-bisphosphate aldolase class I FbaB or CCA00499 SWALL:Q823C6 (EMBL:AE016995) (349 aa) fasta scores: E(): 1.1e-94, 66.85% id in 350 aa; putative fructose-bisphosphate aldolase class I 3602609 fbaB 3285350 fbaB Bacteroides fragilis NCTC 9343 putative fructose-bisphosphate aldolase class I YP_212703.1 3601557 R 272559 CDS YP_212704.1 60682560 3289187 complement(3602768..3603514) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase GpmA or Gpm or PgmA or Pgm or B0755 or C0831 or Z0925 or ECS0783 or SF0549 or S0557 SWALL:GPMA_ECOLI (SWALL:P31217) (249 aa) fasta scores: E(): 3.3e-56, 58.13% id in 246 aa, and to Porphyromonas gingivalis W83 phosphoglycerate mutase Ggpm or PG0130 SWALL:AAQ65372 (EMBL:AE017172) (248 aa) fasta scores: E(): 1.6e-72, 75.4% id in 248 aa; putative 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 3603514 gpmA 3289187 gpmA Bacteroides fragilis NCTC 9343 putative 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase YP_212704.1 3602768 R 272559 CDS YP_212705.1 60682561 3286708 3603671..3606013 1 NC_003228.3 Only low similarity to Streptomyces avermitilis hypothetical protein SAV1407 SWALL:Q82N96 (EMBL:AP005026) (1129 aa) fasta scores: E(): 1.6e-14, 25.55% id in 454 aa; hypothetical protein 3606013 3286708 BF9343_3006 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212705.1 3603671 D 272559 CDS YP_212706.1 60682562 3286706 complement(3606155..3607609) 1 NC_003228.3 Similar to Escherichia coli putative molybdenum transport ATP-binding protein ModF or PhrA or B0760 SWALL:MODF_ECOLI (SWALL:P31060) (490 aa) fasta scores: E(): 1e-48, 36.45% id in 480 aa, and to Yersinia pestis putative molybdenum transport ATP-binding protein ModF or YPO1142 SWALL:Q8ZGY0 (EMBL:AJ414146) (496 aa) fasta scores: E(): 7.5e-48, 36.76% id in 457 aa; putative ABC transport system, ATP-binding protein 3607609 3286706 BF9343_3007 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_212706.1 3606155 R 272559 CDS YP_212707.1 60682563 3286705 complement(3607751..3609265) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron arylsulfatase precursor BT1636 SWALL:Q8A789 (EMBL:AE016932) (509 aa) fasta scores: E(): 4.5e-67, 39.48% id in 509 aa, and to Rhodopirellula baltica arylsulfatase A AslA or RB4784 SWALL:CAD78090 (EMBL:BX294141) (566 aa) fasta scores: E(): 1.4e-33, 30.26% id in 532 aa; putative sulfatase 3609265 3286705 BF9343_3008 Bacteroides fragilis NCTC 9343 putative sulfatase YP_212707.1 3607751 R 272559 CDS YP_212708.1 60682564 3286714 complement(3609281..3610837) 1 NC_003228.3 Similar to Porphyromonas gingivalis beta-hexosaminidase precursor NahA SWALL:HEXA_PORGI (SWALL:P49008) (777 aa) fasta scores: E(): 1e-52, 33.72% id in 516 aa, and to Bacteroides forsythus HexA SWALL:Q84FS9 (EMBL:AY184490) (782 aa) fasta scores: E(): 2.2e-52, 33.53% id in 486 aa; putative exported hydrolase 3610837 3286714 BF9343_3009 Bacteroides fragilis NCTC 9343 putative exported hydrolase YP_212708.1 3609281 R 272559 CDS YP_212709.1 60682565 3286707 complement(3610938..3612803) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1620 SWALL:Q8A7A5 (EMBL:AE016932) (618 aa) fasta scores: E(): 0, 79.83% id in 620 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4358 SWALL:Q89ZL9 (EMBL:AE016945) (628 aa) fasta scores: E(): 1.7e-82, 41.79% id in 646 aa; putative lipoprotein 3612803 3286707 BF9343_3010 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212709.1 3610938 R 272559 CDS YP_212710.1 60682566 3286704 complement(3612818..3616255) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1619 SWALL:Q8A7A6 (EMBL:AE016932) (1150 aa) fasta scores: E(): 0, 78.45% id in 1151 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0754 SWALL:Q8A9R1 (EMBL:AE016929) (1138 aa) fasta scores: E(): 7.2e-209, 47.83% id in 1156 aa; hypothetical protein 3616255 3286704 BF9343_3011 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212710.1 3612818 R 272559 CDS YP_212711.1 60682567 3286703 complement(3616393..3617391) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative anti-sigma factor BT1618 SWALL:Q8A7A7 (EMBL:AE016932) (335 aa) fasta scores: E(): 1.6e-61, 51.51% id in 330 aa, and to Bacteroides fragilis FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 5.6e-31, 34.32% id in 338 aa; putative anti-sigma factor 3617391 3286703 BF9343_3012 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_212711.1 3616393 R 272559 CDS YP_212712.1 60682568 3286712 complement(3617482..3618042) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT1617 SWALL:Q8A7A8 (EMBL:AE016932) (187 aa) fasta scores: E(): 1.5e-35, 59.76% id in 169 aa, and to Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 3.7e-20, 38.65% id in 163 aa; putative sigma factor 3618042 3286712 BF9343_3013 Bacteroides fragilis NCTC 9343 putative sigma factor YP_212712.1 3617482 R 272559 CDS YP_212713.1 60682569 3286711 complement(3618283..3620283) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron pullulanase PulI SWALL:P71095 (EMBL:U67061) (668 aa) fasta scores: E(): 7e-214, 77.69% id in 668 aa, and to Thermotoga maritima pullulanase precursor PulA or TM1845 SWALL:PULA_THEMA (SWALL:O33840) (843 aa) fasta scores: E(): 2.1e-89, 44.83% id in 600 aa; putative exported amylase 3620283 3286711 BF9343_3014 Bacteroides fragilis NCTC 9343 putative exported amylase YP_212713.1 3618283 R 272559 CDS YP_212714.1 60682570 3288290 complement(3620343..3620909) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 crossover junction endodeoxyribonuclease RuvC or B1863 or C2277 or Z2915 or ECS2573 SWALL:RUVC_ECOLI (SWALL:P24239) (172 aa) fasta scores: E(): 7e-15, 40.12% id in 157 aa, and to Porphyromonas gingivalis W83 crossover junction endodeoxyribonuclease RuvC or PG1324 SWALL:AAQ66394 (EMBL:AE017176) (189 aa) fasta scores: E(): 8.5e-44, 64.51% id in 186 aa; putative crossover junction endodeoxyribonuclease 3620909 ruvC 3288290 ruvC Bacteroides fragilis NCTC 9343 putative crossover junction endodeoxyribonuclease YP_212714.1 3620343 R 272559 CDS YP_212715.1 60682571 3286720 complement(3620906..3621268) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1665 SWALL:AAO76772 (EMBL:AE016932) (100 aa) fasta scores: E(): 3.8e-34, 82% id in 100 aa; hypothetical protein 3621268 3286720 BF9343_3016 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212715.1 3620906 R 272559 CDS YP_212716.1 60682572 3286713 complement(3621558..3622898) 1 NC_003228.3 hypothetical protein 3622898 3286713 BF9343_3017 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212716.1 3621558 R 272559 CDS YP_212717.1 60682573 3287833 3623521..3624540 1 NC_003228.3 Similar to Staphylococcus aureus phenylalanyl-tRNA synthetase alpha chain PheS or SAV1138 or SA0985 or MW1021 SWALL:SYFA_STAAM (SWALL:Q99QR1) (352 aa) fasta scores: E(): 1.3e-56, 47.72% id in 329 aa, and to Porphyromonas gingivalis W83 phenylalanyl-tRNA synthetase, alpha subunit PheS or PG1771 SWALL:AAQ66772 (EMBL:AE017178) (340 aa) fasta scores: E(): 5.7e-99, 75.29% id in 340 aa; putative phenylalanyl-tRNA synthetase alpha chain 3624540 pheS 3287833 pheS Bacteroides fragilis NCTC 9343 putative phenylalanyl-tRNA synthetase alpha chain YP_212717.1 3623521 D 272559 CDS YP_212718.1 60682574 3286710 3624652..3625848 1 NC_003228.3 Similar to Bacillus anthracis major facilitator family transporter BA3345 SWALL:Q81N72 (EMBL:AE017034) (399 aa) fasta scores: E(): 2.1e-36, 31.09% id in 402 aa, and to Escherichia coli O157:H7 putative antibiotic efflux protein Z3494 or ECS3121 SWALL:Q8X5A1 (EMBL:AE005456) (396 aa) fasta scores: E(): 1.4e-28, 25.89% id in 390 aa; putative transport related, membrane protein 3625848 3286710 BF9343_3019 Bacteroides fragilis NCTC 9343 putative transport related, membrane protein YP_212718.1 3624652 D 272559 CDS YP_212719.1 60682575 3286709 3625845..3626522 1 NC_003228.3 Similar to Rickettsia prowazekii endonuclease III Nth or RP746 SWALL:END3_RICPR (SWALL:O05956) (212 aa) fasta scores: E(): 1.7e-33, 44.39% id in 205 aa, and to Bacillus subtilis probable endonuclease III Nth or JooB or BSU22340 SWALL:END3_BACSU (SWALL:P39788) (219 aa) fasta scores: E(): 1.7e-29, 45.5% id in 189 aa; putative endonuclease 3626522 3286709 BF9343_3020 Bacteroides fragilis NCTC 9343 putative endonuclease YP_212719.1 3625845 D 272559 CDS YP_212720.1 60682576 3287825 3626612..3627871 1 NC_003228.3 Similar to Bacillus subtilis phosphoglycerate kinase Pgk or BSU33930 SWALL:PGK_BACSU (SWALL:P40924) (394 aa) fasta scores: E(): 3.6e-50, 47.97% id in 419 aa, and to Porphyromonas gingivalis W83 phosphoglycerate kinase Pgk or PG1677 SWALL:AAQ66694 (EMBL:AE017177) (418 aa) fasta scores: E(): 9.7e-122, 80.28% id in 416 aa; putative phosphoglycerate kinase 3627871 pgk 3287825 pgk Bacteroides fragilis NCTC 9343 putative phosphoglycerate kinase YP_212720.1 3626612 D 272559 CDS YP_212721.1 60682577 3286718 3628056..3628901 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron thiamine biosynthesis protein, putative BT1673 SWALL:Q8A752 (EMBL:AE016932) (284 aa) fasta scores: E(): 2.4e-45, 47.1% id in 276 aa, and to Bordetella pertussis ABC transport protein, periplasmic component BP2616 SWALL:CAE42892 (EMBL:BX640418) (325 aa) fasta scores: E(): 8.9e-06, 24.39% id in 287 aa; hypothetical protein 3628901 3286718 BF9343_3022 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212721.1 3628056 D 272559 CDS YP_212722.1 60682578 3286725 3628918..3629955 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1674 SWALL:Q8A751 (EMBL:AE016932) (347 aa) fasta scores: E(): 2.9e-104, 76.09% id in 343 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1382 SWALL:AAQ66444 (EMBL:AE017176) (379 aa) fasta scores: E(): 1.4e-52, 41.45% id in 357 aa; hypothetical protein 3629955 3286725 BF9343_3023 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212722.1 3628918 D 272559 CDS YP_212723.1 60682579 3286719 3629979..3631169 1 NC_003228.3 Similar to Bacillus subtilis hypothetical protein YxaH or S14h or BSU39970 SWALL:YXAH_BACSU (SWALL:P42107) (402 aa) fasta scores: E(): 5.4e-17, 25.18% id in 405 aa, and to Escherichia coli hypothetical protein YeiB or B2152 SWALL:YEIB_ECOLI (SWALL:P25747) (385 aa) fasta scores: E(): 5e-09, 25.7% id in 389 aa; hypothetical protein 3631169 3286719 BF9343_3024 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212723.1 3629979 D 272559 CDS YP_212724.1 60682580 3286715 3631173..3633371 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved protein, with a conserved TPR domain BT1675 SWALL:Q8A750 (EMBL:AE016932) (734 aa) fasta scores: E(): 4.8e-190, 63.48% id in 734 aa, and to Porphyromonas gingivalis W83 TPR domain protein PG0759 SWALL:AAQ65925 (EMBL:AE017174) (717 aa) fasta scores: E(): 5.2e-53, 29.49% id in 746 aa; hypothetical protein 3633371 3286715 BF9343_3025 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212724.1 3631173 D 272559 CDS YP_212725.1 60682581 3286717 3633617..3634126 1 NC_003228.3 Only and low similarity to Bacteroides thetaiotaomicron hypothetical protein BTt3259 SWALL:Q8A2P6 (EMBL:AE016939) (131 aa) fasta scores: E(): 4.8e-06, 31.85% id in 135 aa; hypothetical protein 3634126 3286717 BF9343_3026 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212725.1 3633617 D 272559 CDS YP_212726.1 60682582 3286716 3634169..3634321 1 NC_003228.3 hypothetical protein 3634321 3286716 BF9343_3027 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212726.1 3634169 D 272559 CDS YP_212727.1 60682583 3286731 complement(3634450..3635289) 1 NC_003228.3 Similar to Flavobacterium keratolyticus endo-beta-galactosidase SWALL:Q9ZG90 (EMBL:AF083896) (422 aa) fasta scores: E(): 3.3e-31, 37.5% id in 296 aa, and to Rhodothermus marinus beta-glucanase precursor BglA SWALL:GUB_RHOMR (SWALL:P45798) (286 aa) fasta scores: E(): 2.2e-20, 34.25% id in 254 aa; putative endo-beta-galactosidase 3635289 3286731 BF9343_3028 Bacteroides fragilis NCTC 9343 putative endo-beta-galactosidase YP_212727.1 3634450 R 272559 CDS YP_212728.1 60682584 3286732 3635663..3637177 1 NC_003228.3 Similar to the C-terminal region of Anabaena sp. 90 peptide synthetase McyC SWALL:AAO62588 (EMBL:AY212249) (1284 aa) fasta scores: E(): 7.3e-39, 31.17% id in 510 aa, and to Lactobacillus plantarum D-alanine--poly(phosphoribitol)ligase subunit 1 DltA or LP_2019 SWALL:DLTA_LACPL (SWALL:Q88VM6) (508 aa) fasta scores: E(): 1.7e-34, 29.32% id in 515 aa; putative non ribosome peptide synthase related, AMP-binding protein 3637177 3286732 BF9343_3029 Bacteroides fragilis NCTC 9343 putative non ribosome peptide synthase related, AMP-binding protein YP_212728.1 3635663 D 272559 CDS YP_212729.1 60682585 3288558 3637192..3637434 1 NC_003228.3 Similar to Thermotoga maritima acyl carrier protein AcpP or TM0662 SWALL:ACP_THEMA (SWALL:Q9WZD0) (81 aa) fasta scores: E(): 0.022, 29.48% id in 78 aa, and to Cyanidium caldarium acyl carrier protein AcpP SWALL:ACP_CYACA (SWALL:O19921) (86 aa) fasta scores: E(): 0.3, 29.63% id in 81 aa; putative acyl carrier protein 3637434 3288558 BF9343_3030 Bacteroides fragilis NCTC 9343 putative acyl carrier protein YP_212729.1 3637192 D 272559 CDS YP_212730.1 60682586 3286729 3637438..3638820 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 alginate O-acetyltransferase, putative PG1184 SWALL:AAQ66282 (EMBL:AE017176) (511 aa) fasta scores: E(): 7.8e-38, 34.82% id in 379 aa, and to Pseudomonas fluorescens probable poly(beta-D-mannuronate) O-acetylase AlgI SWALL:ALGI_PSEFL (SWALL:P59789) (495 aa) fasta scores: E(): 1.3e-36, 31.48% id in 432 aa; putative acetyltransferase membrane protein 3638820 3286729 BF9343_3031 Bacteroides fragilis NCTC 9343 putative acetyltransferase membrane protein YP_212730.1 3637438 D 272559 CDS YP_212731.1 60682587 3286728 3638839..3639879 1 NC_003228.3 hypothetical protein 3639879 3286728 BF9343_3032 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212731.1 3638839 D 272559 CDS YP_212732.1 60682588 3288857 3639984..3640376 1 NC_003228.3 putative lipoprotein 3640376 3288857 BF9343_3033 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212732.1 3639984 D 272559 CDS YP_212733.1 60682589 3286730 complement(3640569..3641150) 1 NC_003228.3 Similar to Bacillus subtilis septum formation protein Maf or BSU28050 SWALL:MAF_BACSU (SWALL:Q02169) (189 aa) fasta scores: E(): 1.1e-20, 41.3% id in 184 aa, and to Escherichia coli Maf-like protein YhdE or B3248 SWALL:YHDE_ECOLI (SWALL:P25536) (197 aa) fasta scores: E(): 1.4e-17, 38.91% id in 185 aa; putative septum formation-related protein 3641150 3286730 BF9343_3034 Bacteroides fragilis NCTC 9343 putative septum formation-related protein YP_212733.1 3640569 R 272559 CDS YP_212734.1 60682590 3286727 complement(3641182..3641703) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 phosphatase, YrbI family PG0658 SWALL:AAQ65837 (EMBL:AE017174) (173 aa) fasta scores: E(): 1.2e-30, 51.44% id in 173 aa, and to Escherichia coli, and Escherichia coli O157:H7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC or B3198 or Z4561 or ECS4077 SWALL:KDSC_ECOLI (SWALL:P45396) (188 aa) fasta scores: E(): 1.3e-14, 37.03% id in 162 aa; putative lipopolysaccharide biosynthesis-related protein 3641703 3286727 BF9343_3035 Bacteroides fragilis NCTC 9343 putative lipopolysaccharide biosynthesis-related protein YP_212734.1 3641182 R 272559 CDS YP_212735.1 60682591 3286740 complement(3641724..3642515) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0659 SWALL:AAQ65838 (EMBL:AE017174) (270 aa) fasta scores: E(): 1e-29, 42.29% id in 253 aa, and to Enterococcus faecalis conserved domain protein EF1861 SWALL:Q833S4 (EMBL:AE016952) (281 aa) fasta scores: E(): 5.1e-07, 22.78% id in 259 aa; hypothetical protein 3642515 3286740 BF9343_3036 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212735.1 3641724 R 272559 CDS YP_212736.1 60682592 3286737 complement(3642512..3642844) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1679 SWALL:Q8A746 (EMBL:AE016932) (111 aa) fasta scores: E(): 3.5e-28, 73.87% id in 111 aa; hypothetical protein 3642844 3286737 BF9343_3037 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212736.1 3642512 R 272559 CDS YP_212737.1 60682593 3286739 complement(3642847..3643383) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 nitroreductase family protein PG0660 SWALL:AAQ65839 (EMBL:AE017174) (184 aa) fasta scores: E(): 2.3e-30, 49.71% id in 175 aa, and to Archaeoglobus fulgidus putative NADH dehydrogenase/NAD(P)H nitroreductase AF2267 SWALL:YM67_ARCFU (SWALL:O28017) (174 aa) fasta scores: E(): 1.4e-14, 33.88% id in 180 aa; putative nitroreductase family protein 3643383 3286739 BF9343_3038 Bacteroides fragilis NCTC 9343 putative nitroreductase family protein YP_212737.1 3642847 R 272559 CDS YP_212738.1 60682594 3286738 complement(3643550..3644098) 1 NC_003228.3 Similar to Clostridium perfringens probable carbonic anhydrase CPE0413 SWALL:Q8XNC5 (EMBL:AP003186) (190 aa) fasta scores: E(): 5.4e-40, 60.57% id in 175 aa, and to Bacillus anthracis carbonic anhydrase, prokaryotic type, putative BA5049 SWALL:Q81KF1 (EMBL:AE017039) (187 aa) fasta scores: E(): 3.9e-37, 54.14% id in 181 aa; hypothetical protein 3644098 3286738 BF9343_3039 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212738.1 3643550 R 272559 CDS YP_212739.1 60682595 3286748 3644210..3645193 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1684 SWALL:Q8A741 (EMBL:AE016932) (332 aa) fasta scores: E(): 7.2e-103, 73.19% id in 332 aa, and to Methanosarcina mazei hypothetical protein MM2112 SWALL:Q8PV62 (EMBL:AE013452) (338 aa) fasta scores: E(): 4.4e-06, 21.58% id in 315 aa; hypothetical protein 3645193 3286748 BF9343_3040 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212739.1 3644210 D 272559 CDS YP_212740.1 60682596 3286736 3645426..3645830 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 glyoxalase family protein PG1613 SWALL:AAQ66641 (EMBL:AE017177) (134 aa) fasta scores: E(): 2.8e-35, 74.62% id in 134 aa, and to Bacillus subtilis hypothetical protein YqjC or BSU23930 SWALL:YQJC_BACSU (SWALL:P54540) (140 aa) fasta scores: E(): 5e-18, 45.03% id in 131 aa; hypothetical protein 3645830 3286736 BF9343_3041 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212740.1 3645426 D 272559 CDS YP_212741.1 60682597 3289241 3645956..3647509 1 NC_003228.3 Similar to Propionigenium modestum methylmalonyl-CoA decarboxylase, alpha-subunit MmdA SWALL:O54028 (EMBL:AJ002015) (512 aa) fasta scores: E(): 3.9e-116, 58% id in 512 aa, and to Porphyromonas gingivalis W83 methylmalonyl-CoA decarboxylase, alpha subunit MmdA or PG1612 SWALL:AAQ66640 (EMBL:AE017177) (517 aa) fasta scores: E(): 1.3e-156, 78.33% id in 517 aa. Note: Also similar to BF1623 (515 aa) fasta scores: E(): 4e-126, 62.913% identity in 515 aa overlap and to BF3339 (512 aa) fasta scores: E(): 3.4e-120, 61.400% identity in 500 aa overlap; putative methylmalonyl-CoA decarboxylase, alpha-subunit 3647509 mmdA 3289241 mmdA Bacteroides fragilis NCTC 9343 putative methylmalonyl-CoA decarboxylase, alpha-subunit YP_212741.1 3645956 D 272559 CDS YP_212742.1 60682598 3286733 3647530..3648444 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1687 SWALL:Q8A738 (EMBL:AE016932) (306 aa) fasta scores: E(): 3.5e-67, 58.52% id in 311 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1611 SWALL:AAQ66639 (EMBL:AE017177) (313 aa) fasta scores: E(): 1.8e-49, 46.79% id in 312 aa; hypothetical protein 3648444 3286733 BF9343_3043 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212742.1 3647530 D 272559 CDS YP_212743.1 60682599 3288988 3648470..3648901 1 NC_003228.3 Similar to Propionibacterium freudenreichii shermanii biotin carboxyl carrier protein of methylmalonyl-CoA carboxyl- transferase SWALL:BCCP_PROFR (SWALL:P02904) (123 aa) fasta scores: E(): 1.4e-06, 43.33% id in 120 aa, and to Streptococcus mutans biotin carboxyl carrier protein Bcc or SMU.1016 SWALL:BCCP_STRMU (SWALL:P29337) (130 aa) fasta scores: E(): 7.5e-06, 36% id in 125 aa; putative biotin carboxyl carrier protein 3648901 bcc 3288988 bcc Bacteroides fragilis NCTC 9343 putative biotin carboxyl carrier protein YP_212743.1 3648470 D 272559 CDS YP_212744.1 60682600 3289195 3648904..3650064 1 NC_003228.3 Similar to Salmonella typhi oxaloacetate decarboxylase beta chain OadB or STY3531 or T0056 SWALL:OADB_SALTI (SWALL:Q8Z9M6) (433 aa) fasta scores: E(): 1.1e-61, 50.23% id in 422 aa, and to Porphyromonas gingivalis W83 methylmalonyl-CoA decarboxylase, beta subunit MmdB or PG1608 SWALL:AAQ66636 (EMBL:AE017177) (383 aa) fasta scores: E(): 1.6e-117, 84.93% id in 385 aa; putative methylmalonyl-CoA decarboxylase, beta subunit 3650064 mmdB 3289195 mmdB Bacteroides fragilis NCTC 9343 putative methylmalonyl-CoA decarboxylase, beta subunit YP_212744.1 3648904 D 272559 CDS YP_212745.1 60682601 3286749 3650213..3651544 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron TPR-domain containing protein BT1690 SWALL:Q8A735 (EMBL:AE016932) (444 aa) fasta scores: E(): 1e-100, 59.9% id in 439 aa, and to Porphyromonas gingivalis W83 TPR domain protein PG0300 SWALL:AAQ65516 (EMBL:AE017173) (430 aa) fasta scores: E(): 7.7e-11, 22.98% id in 348 aa. Note: Also similar to the just downstream CDS BF3133 (431 aa) fasta scores: E(): 4.3e-71, 49.535% identity in 430 aa overlap; hypothetical protein 3651544 3286749 BF9343_3046 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212745.1 3650213 D 272559 CDS YP_212746.1 60682602 3286746 3651561..3652853 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron TPR-domain containing protein BT1690 SWALL:Q8A735 (EMBL:AE016932) (444 aa) fasta scores: E(): 1.4e-71, 46.6% id in 427 aa, and to Porphyromonas gingivalis W83 TPR domain protein PG0300 SWALL:AAQ65516 (EMBL:AE017173) (430 aa) fasta scores: E(): 2.6e-10, 22.63% id in 433 aa. Note: Also similar to the just upstream CDS BF3132 (444 aa) fasta scores: E(): 9.9e-72, 49.535% identity in 430 aa overlap; hypothetical protein 3652853 3286746 BF9343_3047 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212746.1 3651561 D 272559 CDS YP_212747.1 60682603 3286745 3653357..3655207 1 NC_003228.3 Similar to Flavobacterium sp. 92 cyclomaltodextrinase precursor CdaSE SWALL:Q8KKG0 (EMBL:AJ489171) (619 aa) fasta scores: E(): 1.6e-96, 41.33% id in 600 aa, and to Bacillus stearothermophilus maltogenic alpha-amylase precursor AmyM SWALL:AMYM_BACST (SWALL:P19531) (719 aa) fasta scores: E(): 6.2e-20, 27.32% id in 527 aa; putative alpha-amylase precursor 3655207 3286745 BF9343_3048 Bacteroides fragilis NCTC 9343 putative alpha-amylase precursor YP_212747.1 3653357 D 272559 CDS YP_212748.1 60682604 3286756 3655365..3655805 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator, MarR family BT1251 SWALL:Q8A8B6 (EMBL:AE016931) (147 aa) fasta scores: E(): 1.4e-26, 51.79% id in 139 aa, and to Shewanella oneidensis transcriptional regulator, MarR family SO0977 SWALL:Q8EI70 (EMBL:AE015542) (165 aa) fasta scores: E(): 3.3e-06, 31.85% id in 113 aa; putative MarR-family transcriptional regulator 3655805 3286756 BF9343_3049 Bacteroides fragilis NCTC 9343 putative MarR-family transcriptional regulator YP_212748.1 3655365 D 272559 CDS YP_212749.1 60682605 3286747 3655818..3656885 1 NC_003228.3 Similar to Rhizobium loti probable secretion protein MLL0995 SWALL:Q98LJ7 (EMBL:AP002996) (417 aa) fasta scores: E(): 2.7e-28, 35.19% id in 341 aa, and to Pseudomonas syringae HlyD family secretion protein PSPTO3703 SWALL:Q87YT9 (EMBL:AE016869) (387 aa) fasta scores: E(): 5e-27, 35.45% id in 330 aa; putative HlyD-family secretion protein 3656885 3286747 BF9343_3050 Bacteroides fragilis NCTC 9343 putative HlyD-family secretion protein YP_212749.1 3655818 D 272559 CDS YP_212750.1 60682606 3286744 3656890..3658485 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transport protein BT1248 SWALL:Q8A8B9 (EMBL:AE016931) (531 aa) fasta scores: E(): 6.4e-134, 58.38% id in 531 aa, and to Rhizobium loti probable transport protein MLL0994 SWALL:Q98LJ8 (EMBL:AP002996) (537 aa) fasta scores: E(): 1.8e-14, 21.22% id in 523 aa; putative transport-related membrane protein 3658485 3286744 BF9343_3051 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_212750.1 3656890 D 272559 CDS YP_212751.1 60682607 3285348 complement(3658580..3659584) 1 NC_003228.3 Similar to Nostoc commune fructose-bisphosphate aldolase Fba or Fda SWALL:ALF_NOSCO (SWALL:Q9XDP3) (359 aa) fasta scores: E(): 2.1e-31, 46.13% id in 349 aa, and to Treponema pallidum fructose-bisphosphate aldolase Fba or Fda or TP0662 SWALL:ALF_TREPA (SWALL:O83668) (332 aa) fasta scores: E(): 2.2e-84, 70.57% id in 333 aa; putative fructose-bisphosphate aldolase 3659584 fba 3285348 fba Bacteroides fragilis NCTC 9343 putative fructose-bisphosphate aldolase YP_212751.1 3658580 R 272559 CDS YP_212752.1 60682608 3286743 complement(3659765..3660784) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3559 SWALL:Q8A1U9 (EMBL:AE016941) (343 aa) fasta scores: E(): 2.2e-81, 59.53% id in 341 aa, and to Chlorobium tepidum hypothetical protein CT0957 SWALL:Q8KDT7 (EMBL:AE012860) (344 aa) fasta scores: E(): 6.1e-22, 31.32% id in 348 aa; hypothetical protein 3660784 3286743 BF9343_3053 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212752.1 3659765 R 272559 CDS YP_212753.1 60682609 3288842 3661056..3661307 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron 50S ribosomal protein L31 type B RpmE2 or BT1692 SWALL:R31B_BACTN (SWALL:Q8A733) (84 aa) fasta scores: E(): 3.6e-31, 98.79% id in 83 aa, and to Porphyromonas gingivalis W83 ribosomal protein L31 RpmE or PG0592 SWALL:AAQ65778 (EMBL:AE017174) (85 aa) fasta scores: E(): 1.2e-24, 75.9% id in 83 aa; 50S ribosomal protein L31 3661307 rpmE 3288842 rpmE Bacteroides fragilis NCTC 9343 50S ribosomal protein L31 YP_212753.1 3661056 D 272559 CDS YP_212754.1 60682610 3286754 3661655..3662776 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 thioredoxin family protein PG1638 SWALL:AAQ66661 (EMBL:AE017177) (328 aa) fasta scores: E(): 8.9e-08, 23.56% id in 331 aa, and to Bacteroides thetaiotaomicron thiol:disulfide interchange protein BT1292 SWALL:Q8A882 (EMBL:AE016931) (366 aa) fasta scores: E(): 6.3e-07, 23.01% id in 365 aa; hypothetical protein 3662776 3286754 BF9343_3055 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212754.1 3661655 D 272559 CDS YP_212755.1 60682611 3286753 3662914..3664440 1 NC_003228.3 hypothetical protein 3664440 3286753 BF9343_3056 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212755.1 3662914 D 272559 CDS YP_212756.1 60682612 3286750 complement(3664551..3667412) 1 NC_003228.3 Similar in its N-terminal region to Bacteroides thetaiotaomicron conserved hypothetical protein BT4605 SWALL:Q89YX5 (EMBL:AE016945) (819 aa) fasta scores: E(): 1.3e-24, 33% id in 303 aa, and in its C-terminal region to Rhodothermus marinus 1,4-alpha-glucan branching enzyme GlgB SWALL:GLGB_RHOMR (SWALL:Q93HU3) (621 aa) fasta scores: E(): 4.2e-16, 26.21% id in 576 aa; conserved hypothetical lipoprotein 3667412 3286750 BF9343_3057 Bacteroides fragilis NCTC 9343 conserved hypothetical lipoprotein YP_212756.1 3664551 R 272559 CDS YP_212757.1 60682613 3286755 complement(3667517..3669115) 1 NC_003228.3 putative lipoprotein 3669115 3286755 BF9343_3058 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212757.1 3667517 R 272559 CDS YP_212758.1 60682614 3286752 complement(3669151..3670770) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron SusD, outer membrane protein or BT3701 SWALL:Q8A1G2 (EMBL:AE016941) (551 aa) fasta scores: E(): 6.8e-16, 35.2% id in 588 aa; hypothetical protein 3670770 3286752 BF9343_3059 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212758.1 3669151 R 272559 CDS YP_212759.1 60682615 3286751 complement(3670781..3673789) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron SusC, outer membrane protein involved in starch binding SusC or BT3702 SWALL:Q8A1G1 (EMBL:AE016941) (1003 aa) fasta scores: E(): 9.7e-187, 50.54% id in 1017 aa, and to Porphyromonas gingivalis W83 RagA protein or PG0185 SWALL:AAQ65420 (EMBL:AE017172) (1017 aa) fasta scores: E(): 3.4e-27, 28.92% id in 1065 aa; hypothetical protein 3673789 3286751 BF9343_3060 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212759.1 3670781 R 272559 CDS YP_212760.1 60682616 3286761 3674105..3675115 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri transcriptional repressor CytR or B3934 or C4887 or Z5481 or ECS4861 or SF4012 or S3735 SWALL:CYTR_ECOLI (SWALL:P06964) (341 aa) fasta scores: E(): 1e-29, 33.13% id in 332 aa, and to Bacillus megaterium glucose-resistance amylase regulator CcpA SWALL:CCPA_BACME (SWALL:P46828) (332 aa) fasta scores: E(): 1.2e-25, 30.16% id in 305 aa; putative LacI-family transcriptional regulator 3675115 3286761 BF9343_3061 Bacteroides fragilis NCTC 9343 putative LacI-family transcriptional regulator YP_212760.1 3674105 D 272559 CDS YP_212761.1 60682617 3286760 3675136..3676452 1 NC_003228.3 Similar to Lactobacillus plantarum sugar transport protein LP_1729 SWALL:Q88WB9 (EMBL:AL935257) (448 aa) fasta scores: E(): 1.3e-95, 54.6% id in 434 aa, and to Xanthomonas campestris sugar transporter Suc1 or XCC3357 SWALL:Q8P5I4 (EMBL:AE012454) (439 aa) fasta scores: E(): 9.1e-40, 31.05% id in 438 aa; hypothetical protein 3676452 3286760 BF9343_3062 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212761.1 3675136 D 272559 CDS YP_212762.1 60682618 3286757 3676805..3679120 1 NC_003228.3 Similar to Lactobacillus sanfranciscensis maltosephosphorylase MapA SWALL:O87772 (EMBL:AJ224340) (753 aa) fasta scores: E(): 1.9e-120, 41.85% id in 767 aa, and to Bacillus subtilis hypothetical transport protein YvdK or BSU34570 SWALL:YVDK_BACSU (SWALL:O06993) (757 aa) fasta scores: E(): 1.9e-70, 44.09% id in 753 aa; putative glycosyl hydrolase 3679120 3286757 BF9343_3063 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase YP_212762.1 3676805 D 272559 CDS YP_212763.1 60682619 3286762 3679463..3680524 1 NC_003228.3 Similar to Vibrio cholerae periplasmic linker protein, putative VC1756 SWALL:Q9KR86 (EMBL:AE004253) (364 aa) fasta scores: E(): 1.2e-24, 29.85% id in 355 aa, and to Yersinia pestis putative lipoprotein YPO0420 SWALL:Q8ZIR9 (EMBL:AJ414142) (360 aa) fasta scores: E(): 3.8e-20, 28.29% id in 357 aa; putative conserved lipoprotein 3680524 3286762 BF9343_3064 Bacteroides fragilis NCTC 9343 putative conserved lipoprotein YP_212763.1 3679463 D 272559 CDS YP_212764.1 60682620 3286758 3680667..3683702 1 NC_003228.3 Similar to Vibrio parahaemolyticus transporter, AcrB/AcrD/AcrF family VPA0809 SWALL:Q87HZ7 (EMBL:AP005086) (1019 aa) fasta scores: E(): 5.2e-120, 34.97% id in 1018 aa, and to Yersinia pestis putative multi-drug efflux protein YPO0421 or MexB or Y3759 SWALL:Q8ZIR8 (EMBL:AJ414142) (1028 aa) fasta scores: E(): 8.5e-109, 33.88% id in 1021 aa; putative AcrB/AcrD/AcrF family membrane protein 3683702 3286758 BF9343_3065 Bacteroides fragilis NCTC 9343 putative AcrB/AcrD/AcrF family membrane protein YP_212764.1 3680667 D 272559 CDS YP_212765.1 60682621 3286766 3683730..3685004 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane protein BT1267 SWALL:Q8A8A0 (EMBL:AE016931) (434 aa) fasta scores: E(): 1.4e-22, 27.54% id in 432 aa, and to Alvinella pompejana epibiont 7G3 lipid protein NT03AP0029 SWALL:AAQ75182 (EMBL:AY312991) (468 aa) fasta scores: E(): 8.3e-12, 25.13% id in 362 aa; hypothetical protein 3685004 3286766 BF9343_3066 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212765.1 3683730 D 272559 CDS YP_212766.1 60682622 3286759 3685247..3686539 1 NC_003228.3 hypothetical protein 3686539 3286759 BF9343_3067 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212766.1 3685247 D 272559 CDS YP_212767.1 60682623 3286768 3686675..3690424 1 NC_003228.3 Similar to Haemophilus influenzae phosphoribosylformylglycinamidine synthase PurL or HI0752 SWALL:PUR4_HAEIN (SWALL:P43847) (1297 aa) fasta scores: E(): 5.2e-105, 36.68% id in 1292 aa, and to Escherichia coli phosphoribosylformylglycinamidine synthase PurL or PurI or B2557 SWALL:PUR4_ECOLI (SWALL:P15254) (1295 aa) fasta scores: E(): 3.7e-101, 34.23% id in 1288 aa; putative phosphoribosylformylglycinamidine synthase 3690424 3286768 BF9343_3068 Bacteroides fragilis NCTC 9343 putative phosphoribosylformylglycinamidine synthase YP_212767.1 3686675 D 272559 CDS YP_212768.1 60682624 3286767 3690596..3694588 1 NC_003228.3 only full length similarity to matches from Bacteroides thetaiotaomicron e.g. two-component system sensor histidine kinase/response regulator, hybrid BT1734 SWALL:Q8A6Z1 (EMBL:AE016933) (1346 aa) fasta scores: E(): 0, 73.09% id in 1327 aa; putative two-component system sensor kinase/response regulator fusion protein 3694588 3286767 BF9343_3069 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_212768.1 3690596 D 272559 CDS YP_212769.1 60682625 3286764 3694616..3695158 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron chromate transport protein BT2789 SWALL:Q8A415 (EMBL:AE016937) (185 aa) fasta scores: E(): 2.2e-35, 55.81% id in 172 aa, and to Clostridium tetani chromate transport protein CTC00660 SWALL:Q897R9 (EMBL:AE015938) (181 aa) fasta scores: E(): 2e-28, 50.88% id in 169 aa; putative chromate transport protein 3695158 3286764 BF9343_3070 Bacteroides fragilis NCTC 9343 putative chromate transport protein YP_212769.1 3694616 D 272559 CDS YP_212770.1 60682626 3286763 3695184..3695732 1 NC_003228.3 Similar to Fusobacterium nucleatum subsp. vincentii ATCC 49256 chromate transport protein FNV1807 SWALL:EAA24820 (EMBL:AABF01000014) (176 aa) fasta scores: E(): 1e-23, 50.54% id in 182 aa, and to Clostridium perfringens probable chromate transport protein CPE2248 SWALL:Q8XI73 (EMBL:AP003193) (189 aa) fasta scores: E(): 9.8e-19, 34.75% id in 187 aa; putative hromate transport membrane protein 3695732 3286763 BF9343_3071 Bacteroides fragilis NCTC 9343 putative hromate transport membrane protein YP_212770.1 3695184 D 272559 CDS YP_212771.1 60682627 3286773 complement(3695904..3697412) 1 NC_003228.3 Similar to Bacillus subtilis hypothetical protein YngK SWALL:Q9R9I7 (EMBL:AF184956) (510 aa) fasta scores: E(): 3.4e-77, 40.9% id in 506 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein precursor YddW or B1491 or Z2217 or ECS2096 or SF1736 or S1869 SWALL:YDDW_ECOLI (SWALL:P76130) (439 aa) fasta scores: E(): 2.5e-39, 39.89% id in 371 aa; hypothetical protein 3697412 3286773 BF9343_3072 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212771.1 3695904 R 272559 CDS YP_212772.1 60682628 3288778 3697582..3700359 1 NC_003228.3 Similar to Micrococcus luteus UvrABC system protein A UvrA SWALL:UVRA_MICLU (SWALL:P13567) (992 aa) fasta scores: E(): 7.4e-102, 47.05% id in 967 aa, and to Bacillus subtilis UvrABC system protein A UvrA or BSU35160 SWALL:UVRA_BACSU (SWALL:O34863) (957 aa) fasta scores: E(): 9.2e-101, 48.88% id in 939 aa; UvrABC SOS-repair system protein excinuclease A 3700359 uvrA2 3288778 uvrA2 Bacteroides fragilis NCTC 9343 UvrABC SOS-repair system protein excinuclease A YP_212772.1 3697582 D 272559 CDS YP_212773.1 60682629 3286765 complement(3700528..3701010) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1740 SWALL:Q8A6Y5 (EMBL:AE016933) (161 aa) fasta scores: E(): 1.3e-41, 64.59% id in 161 aa; hypothetical protein 3701010 3286765 BF9343_3074 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212773.1 3700528 R 272559 CDS YP_212774.1 60682630 3286775 complement(3701018..3701248) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1741 SWALL:Q8A6Y4 (EMBL:AE016933) (76 aa) fasta scores: E(): 1.4e-17, 69.73% id in 76 aa; hypothetical protein 3701248 3286775 BF9343_3075 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212774.1 3701018 R 272559 CDS YP_212775.1 60682631 3286774 complement(3701268..3702695) 1 NC_003228.3 Similar to Photorhabdus luminescens subsp. laumondii TTO1 similar to probable carbon starvation protein A, putative transmembrane protein PLU0240 SWALL:CAE12535 (EMBL:BX571859) (484 aa) fasta scores: E(): 1.1e-94, 54.01% id in 461 aa, and to Escherichia coli carbon starvation protein A CstA or B0598 SWALL:CSTA_ECOLI (SWALL:P15078) (701 aa) fasta scores: E(): 1.4e-10, 24.77% id in 561 aa; putative carbon starvation-related membrane protein 3702695 3286774 BF9343_3076 Bacteroides fragilis NCTC 9343 putative carbon starvation-related membrane protein YP_212775.1 3701268 R 272559 CDS YP_212776.1 60682632 3286771 3703002..3704483 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein YngK-1 or PG0061 SWALL:AAQ65311 (EMBL:AE017172) (512 aa) fasta scores: E(): 4.1e-39, 34.95% id in 492 aa, and to Bacillus subtilis YngK SWALL:Q9R9I7 (EMBL:AF184956) (510 aa) fasta scores: E(): 2.9e-31, 32.73% id in 504 aa; hypothetical protein 3704483 3286771 BF9343_3077 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212776.1 3703002 D 272559 CDS YP_212777.1 60682633 3286770 3704567..3706837 1 NC_003228.3 Only full length similarity to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1531 SWALL:Q8A7J3 (EMBL:AE016932) (869 aa) fasta scores: E(): 2.2e-41, 27.31% id in 886 aa; putative two-component regulator sensor kinase 3706837 3286770 BF9343_3078 Bacteroides fragilis NCTC 9343 putative two-component regulator sensor kinase YP_212777.1 3704567 D 272559 CDS YP_212778.1 60682634 3286780 complement(3706842..3708029) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1745 SWALL:Q8A6Y0 (EMBL:AE016933) (398 aa) fasta scores: E(): 5.2e-93, 59.74% id in 390 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1214 SWALL:AAQ66304 (EMBL:AE017176) (412 aa) fasta scores: E(): 7.3e-31, 30.94% id in 404 aa; hypothetical protein 3708029 3286780 BF9343_3079 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212778.1 3706842 R 272559 CDS YP_212779.1 60682635 3286772 3708799..3709977 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0547 SWALL:AAQ65739 (EMBL:AE017173) (398 aa) fasta scores: E(): 9.7e-79, 52.52% id in 396 aa, and to Coxiella burnetii hypothetical protein CBU1638 SWALL:Q83B75 (EMBL:AE016965) (401 aa) fasta scores: E(): 1.4e-32, 30.31% id in 409 aa; hypothetical protein 3709977 3286772 BF9343_3080 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212779.1 3708799 D 272559 CDS YP_212780.1 60682636 3286769 3709996..3710556 1 NC_003228.3 hypothetical protein 3710556 3286769 BF9343_3081 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212780.1 3709996 D 272559 CDS YP_212781.1 60682637 3289282 3710593..3714147 1 NC_003228.3 Similar to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_KLEPN (SWALL:P03833) (1171 aa) fasta scores: E(): 0, 58.22% id in 1180 aa, and to Enterobacter agglomerans pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_ENTAG (SWALL:P19543) (1173 aa) fasta scores: E(): 0, 57.94% id in 1189 aa; putative pyruvate-flavodoxin oxidoreductase 3714147 nifJ 3289282 nifJ Bacteroides fragilis NCTC 9343 putative pyruvate-flavodoxin oxidoreductase YP_212781.1 3710593 D 272559 CDS YP_212782.1 60682638 3286781 3714349..3714852 1 NC_003228.3 Similar to Bifidobacterium longum hypothetical protein BL1151 SWALL:Q8G569 (EMBL:AE014739) (180 aa) fasta scores: E(): 3.9e-19, 39.26% id in 163 aa, and to Clostridium perfringens probable acetyltransferase CPE0939 SWALL:Q8XLV1 (EMBL:AP003188) (170 aa) fasta scores: E(): 1e-15, 32.33% id in 167 aa; hypothetical protein 3714852 3286781 BF9343_3083 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212782.1 3714349 D 272559 CDS YP_212783.1 60682639 3286778 complement(3714894..3715748) 1 NC_003228.3 Similar to Clostridium tetani glycine betaine-binding protein CTC02340 SWALL:Q891M9 (EMBL:AE015944) (298 aa) fasta scores: E(): 6.7e-45, 44.68% id in 282 aa, and to Bacillus cereus glycine betaine-binding protein BC2792 SWALL:Q81CH2 (EMBL:AE017007) (285 aa) fasta scores: E(): 1.4e-32, 38.19% id in 288 aa; putative exported glycine betaine-binding protein 3715748 3286778 BF9343_3084 Bacteroides fragilis NCTC 9343 putative exported glycine betaine-binding protein YP_212783.1 3714894 R 272559 CDS YP_212784.1 60682640 3289203 complement(3715768..3716592) 1 NC_003228.3 Similar to Bacillus subtilis glycine betaine transport system permease protein OpuAB or BSU02990 SWALL:OPAB_BACSU (SWALL:P46921) (282 aa) fasta scores: E(): 1.4e-52, 52.38% id in 273 aa, and to Clostridium tetani putative glycine-betaine binding permease protein CTC02341 SWALL:Q891M8 (EMBL:AE015944) (275 aa) fasta scores: E(): 3e-55, 57.03% id in 270 aa; putative glycine betaine transport system permease protein 3716592 opuAB 3289203 opuAB Bacteroides fragilis NCTC 9343 putative glycine betaine transport system permease protein YP_212784.1 3715768 R 272559 CDS YP_212785.1 60682641 3289201 complement(3716589..3717815) 1 NC_003228.3 Similar to Bacillus subtilis glycine betaine transport ATP-binding protein OpuAA or BSU02980 SWALL:OPAA_BACSU (SWALL:P46920) (418 aa) fasta scores: E(): 1.1e-62, 49.87% id in 393 aa, and to Clostridium tetani glycine betaine transport ATP-binding protein CTC02342 SWALL:Q891M7 (EMBL:AE015944) (394 aa) fasta scores: E(): 1.2e-68, 51.01% id in 394 aa; putative glycine betaine transport ATP-binding protein 3717815 opuAA 3289201 opuAA Bacteroides fragilis NCTC 9343 putative glycine betaine transport ATP-binding protein YP_212785.1 3716589 R 272559 CDS YP_212786.1 60682642 3286777 complement(3718150..3718494) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative methylated-DNA methyltransferase BT1753 SWALL:Q8A6X2 (EMBL:AE016933) (110 aa) fasta scores: E(): 1.1e-23, 64.22% id in 109 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YbaZ or B0454 or SF0400 or S406 SWALL:YBAZ_ECOLI (SWALL:P75707) (129 aa) fasta scores: E(): 2.4e-10, 42.85% id in 105 aa; conserved DNA methyltransferase protein 3718494 3286777 BF9343_3087 Bacteroides fragilis NCTC 9343 conserved DNA methyltransferase protein YP_212786.1 3718150 R 272559 CDS YP_212787.1 60682643 3286575 complement(3718525..3721248) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT1754 SWALL:Q8A6X1 (EMBL:AE016933) (921 aa) fasta scores: E(): 0, 75.3% id in 911 aa, and C-terminal region similar to C-trminal region of Porphyromonas gingivalis regulator of gingipain and black pigmentation GppX SWALL:BAC81440 (EMBL:AB109632) (961 aa) fasta scores: E(): 1.6e-41, 30.42% id in 539 aa; putative two-component system sensor kinase/response regulator fusion protein 3721248 3286575 BF9343_3088 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_212787.1 3718525 R 272559 CDS YP_212788.1 60682644 3286779 complement(3721435..3722325) 1 NC_003228.3 Similar to Bifidobacterium longum protein in PfkB family of sugar kinases BL1339 SWALL:Q8G4N9 (EMBL:AE014763) (298 aa) fasta scores: E(): 1.7e-44, 44.4% id in 295 aa, and to Salmonella typhimurium fructokinase ScrK SWALL:SCRK_SALTY (SWALL:P26984) (307 aa) fasta scores: E(): 6.8e-13, 29.22% id in 308 aa; putative fructokinase 3722325 3286779 BF9343_3089 Bacteroides fragilis NCTC 9343 putative fructokinase YP_212788.1 3721435 R 272559 CDS YP_212789.1 60682645 3286776 complement(3722357..3723523) 1 NC_003228.3 Similar to Coxiella burnetii glucose/galactose transporter family protein CBU0265 SWALL:Q83EQ0 (EMBL:AE016960) (408 aa) fasta scores: E(): 3.7e-17, 24.02% id in 383 aa, and to Brucella abortus glucose/galactose transporter GluP SWALL:GLUP_BRUAB (SWALL:Q44623) (412 aa) fasta scores: E(): 4.7e-09, 23.46% id in 392 aa; putative sugar transport-related, membrane protein 3723523 3286776 BF9343_3090 Bacteroides fragilis NCTC 9343 putative sugar transport-related, membrane protein YP_212789.1 3722357 R 272559 CDS YP_212790.1 60682646 3288306 complement(3723569..3725437) 1 NC_003228.3 Similar to Bacteroides fragilis levanase ScrL SWALL:Q45155 (EMBL:M83774) (622 aa) fasta scores: E(): 0, 99.67% id in 622 aa, and to Bacillus subtilis levanase precursor SacC or BSU27030 SWALL:SACC_BACSU (SWALL:P05656) (677 aa) fasta scores: E(): 2e-75, 45.24% id in 515 aa; levanase 3725437 scrL 3288306 scrL Bacteroides fragilis NCTC 9343 levanase YP_212790.1 3723569 R 272559 CDS YP_212791.1 60682647 3286576 complement(3725562..3727913) 1 NC_003228.3 Similar to the previously sequenced fragment of Bacteroides fragilis levanase SWALL:Q45154 (EMBL:M83774) (416 aa) fasta scores: E(): 1.1e-169, 99.76% id in 416 aa, and full length low similarity to Xanthomonas campestris TonB-dependent receptor FhuA or XCC2665 SWALL:Q8P7E6 (EMBL:AE012379) (792 aa) fasta scores: E(): 3.2e-11, 22.81% id in 710 aa; hypothetical protein 3727913 3286576 BF9343_3092 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212791.1 3725562 R 272559 CDS YP_212792.1 60682648 3286573 complement(3728101..3728457) 1 NC_003228.3 hypothetical DNA-binding protein 3728457 3286573 BF9343_3093 Bacteroides fragilis NCTC 9343 hypothetical DNA-binding protein YP_212792.1 3728101 R 272559 CDS YP_212793.1 60682649 3286572 complement(3728612..3729385) 1 NC_003228.3 hypothetical protein 3729385 3286572 BF9343_3094 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212793.1 3728612 R 272559 CDS YP_212794.1 60682650 3286582 complement(3729432..3730970) 1 NC_003228.3 putative lipoprotein 3730970 3286582 BF9343_3095 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212794.1 3729432 R 272559 CDS YP_212795.1 60682651 3286574 3732322..3733587 1 NC_003228.3 Similar to Helicobacter pylori J99 putative glucose/galactose transporter GluP or JHP1101 SWALL:GLUP_HELPJ (SWALL:Q9ZK41) (407 aa) fasta scores: E(): 2.9e-27, 30.69% id in 417 aa, and to Escherichia coli L-fucose permease FucP or B2801 SWALL:FUCP_ECOLI (SWALL:P11551) (438 aa) fasta scores: E(): 5.6e-07, 24.02% id in 408 aa; putative transport-related, membrane protein 3733587 3286574 BF9343_3096 Bacteroides fragilis NCTC 9343 putative transport-related, membrane protein YP_212795.1 3732322 D 272559 CDS YP_212796.1 60682652 3286571 complement(3733584..3734312) 1 NC_003228.3 Similar to Pasteurella multocida hypothetical protein PM0161 SWALL:Q9CP92 (EMBL:AE006050) (242 aa) fasta scores: E(): 3.5e-63, 62.65% id in 241 aa, and to Ralstonia solanacearum putative NADPH nitroreductase protein RSC0821 or RS05178 SWALL:Q8Y169 (EMBL:AL646061) (242 aa) fasta scores: E(): 2e-11, 30.56% id in 229 aa; putative nitroreductase family protein 3734312 3286571 BF9343_3097 Bacteroides fragilis NCTC 9343 putative nitroreductase family protein YP_212796.1 3733584 R 272559 CDS YP_212797.1 60682653 3286570 complement(3734331..3735029) 1 NC_003228.3 Similar to Pseudomonas aeruginosa hypothetical protein PA2719 SWALL:Q9I0C3 (EMBL:AE004700) (228 aa) fasta scores: E(): 3.2e-33, 43.63% id in 220 aa, and to Nitrosomonas europaea ThiJ/PfpI family NE2259 SWALL:Q82SP8 (EMBL:BX321864) (234 aa) fasta scores: E(): 4.1e-31, 43.17% id in 227 aa; hypothetical protein 3735029 3286570 BF9343_3098 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212797.1 3734331 R 272559 CDS YP_212798.1 60682654 3286580 complement(3735159..3735998) 1 NC_003228.3 Similar to Bacillus cereus serine protease BC0759 SWALL:Q81HP5 (EMBL:AE017000) (284 aa) fasta scores: E(): 8e-52, 49.07% id in 271 aa, and to Escherichia coli hypothetical protein YjjU or B4377 SWALL:YJJU_ECOLI (SWALL:P39407) (357 aa) fasta scores: E(): 2.6e-12, 28.04% id in 271 aa; conserved hypothetical phospholipase 3735998 3286580 BF9343_3099 Bacteroides fragilis NCTC 9343 conserved hypothetical phospholipase YP_212798.1 3735159 R 272559 CDS YP_212799.1 60682655 3286579 complement(3736066..3738255) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 sodium/hydrogen antiporter PG1792 SWALL:AAQ66792 (EMBL:AE017178) (767 aa) fasta scores: E(): 7.3e-96, 39.81% id in 756 aa, and to Streptomyces viridochromogenes putative transporter AviJ SWALL:Q93KW8 (EMBL:AF333038) (476 aa) fasta scores: E(): 6.5e-54, 42.5% id in 407 aa; putative Na/H exchanger membrane protein 3738255 3286579 BF9343_3100 Bacteroides fragilis NCTC 9343 putative Na/H exchanger membrane protein YP_212799.1 3736066 R 272559 CDS YP_212800.1 60682656 3286588 complement(3738960..3740012) 1 NC_003228.3 Low similarity to Hordeum vulgare D-protein SWALL:Q8VWY8 (EMBL:AB022764) (327 aa) fasta scores: E(): 2.2e-07, 24.29% id in 317 aa, and to Gloeobacter violaceus GLL3169 protein SWALL:BAC91110 (EMBL:AP006579) (346 aa) fasta scores: E(): 2e-05, 26.83% id in 272 aa; hypothetical protein 3740012 3286588 BF9343_3101 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212800.1 3738960 R 272559 CDS YP_212801.1 60682657 3286581 3740210..3741535 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1786 SWALL:Q8A6U0 (EMBL:AE016933) (445 aa) fasta scores: E(): 3.7e-101, 57.82% id in 441 aa, and to Porphyromonas gingivalis W83 lipoprotein, putative PG1835 SWALL:AAQ66829 (EMBL:AE017178) (455 aa) fasta scores: E(): 2.5e-05, 24.13% id in 290 aa; putative lipoprotein 3741535 3286581 BF9343_3102 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212801.1 3740210 D 272559 CDS YP_212802.1 60682658 3286578 3741532..3742737 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein BT4367 SWALL:Q89ZL0 (EMBL:AE016945) (431 aa) fasta scores: E(): 4.2e-15, 29.64% id in 425 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0448 SWALL:AAQ65647 (EMBL:AE017173) (434 aa) fasta scores: E(): 4.7e-13, 26.73% id in 419 aa; hypothetical protein 3742737 3286578 BF9343_3103 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212802.1 3741532 D 272559 CDS YP_212803.1 60682659 3286577 complement(3742739..3743194) 1 NC_003228.3 Similar to Vibrio cholerae lipoprotein VC1962 SWALL:Q9KQN6 (EMBL:AE004271) (163 aa) fasta scores: E(): 7.3e-11, 35.97% id in 164 aa, and to Bordetella bronchiseptica lipoprotein BB3302 SWALL:CAE33794 (EMBL:BX640447) (142 aa) fasta scores: E(): 7.7e-10, 34.89% id in 149 aa; putative lipoprotein 3743194 3286577 BF9343_3104 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212803.1 3742739 R 272559 CDS YP_212804.1 60682660 3286587 complement(3743207..3744586) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 outer membrane efflux protein, putative PG0094 SWALL:AAQ65341 (EMBL:AE017172) (501 aa) fasta scores: E(): 1.5e-24, 29.56% id in 504 aa, and to Shewanella oneidensis outer membrane efflux protein SO4090 SWALL:Q8EA19 (EMBL:AE015839) (473 aa) fasta scores: E(): 6.4e-10, 21.1% id in 469 aa; hypothetical protein 3744586 3286587 BF9343_3105 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212804.1 3743207 R 272559 CDS YP_212805.1 60682661 3286586 complement(3744604..3747729) 1 NC_003228.3 Similar to Vibrio vulnificus YJ016 transporter, AcrB/D/F family VVA0701 SWALL:BAC96727 (EMBL:AP005347) (1019 aa) fasta scores: E(): 7.4e-90, 35.55% id in 1049 aa, and to Yersinia pestis putative multi-drug efflux protein YPO0421 or MexB or Y3759 SWALL:Q8ZIR8 (EMBL:AJ414142) (1028 aa) fasta scores: E(): 7.2e-83, 33.68% id in 1045 aa; putative transport-related membrane protein 3747729 3286586 BF9343_3106 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_212805.1 3744604 R 272559 CDS YP_212806.1 60682662 3286583 complement(3747729..3748796) 1 NC_003228.3 Similar to Vibrio vulnificus membrane-fusion protein VV20027 SWALL:Q8D7W9 (EMBL:AE016808) (370 aa) fasta scores: E(): 1.3e-20, 28.32% id in 346 aa, and to Bordetella pertussis probable HlyD-family secretion protein BP0828 SWALL:CAE41131 (EMBL:BX640413) (368 aa) fasta scores: E(): 2.5e-15, 26.12% id in 310 aa; putative lipoprotein 3748796 3286583 BF9343_3107 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212806.1 3747729 R 272559 CDS YP_212807.1 60682663 3288856 3748967..3749845 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 transcriptional regulator, AraC family PG2125 SWALL:AAQ67080 (EMBL:AE017179) (292 aa) fasta scores: E(): 2.6e-10, 25.26% id in 285 aa, and to Clostridium butyricum putative transcriptional regulator SWALL:Q840D9 (EMBL:AY138581) (344 aa) fasta scores: E(): 1.3e-08, 23.68% id in 266 aa; putative AraC-family regulatory protein 3749845 3288856 BF9343_3108 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212807.1 3748967 D 272559 CDS YP_212808.1 60682664 3286585 3749935..3751119 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron aminopeptidase C BT1789 SWALL:Q8A6T7 (EMBL:AE016933) (394 aa) fasta scores: E(): 6.7e-136, 89.59% id in 394 aa, and to Porphyromonas gingivalis W83 cysteine peptidase, putative PG1788 SWALL:AAQ66788 (EMBL:AE017178) (423 aa) fasta scores: E(): 1.5e-83, 56.85% id in 401 aa; hypothetical protein 3751119 3286585 BF9343_3109 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212808.1 3749935 D 272559 CDS YP_212809.1 60682665 3286584 complement(3751301..3752038) 1 NC_003228.3 Similar to Bacillus cereus autolysin response regulator BC5440 SWALL:Q814J1 (EMBL:AE017015) (246 aa) fasta scores: E(): 1.4e-19, 30.89% id in 246 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical response regulatory protein TehY or B2125 or Z3302 or ECS2936 or C2655 SWALL:YEHT_ECOLI (SWALL:P33356) (239 aa) fasta scores: E(): 1.4e-15, 30.76% id in 247 aa; putative two-component system, response regulator 3752038 3286584 BF9343_3110 Bacteroides fragilis NCTC 9343 putative two-component system, response regulator YP_212809.1 3751301 R 272559 CDS YP_212810.1 60682666 3286593 complement(3752035..3753204) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative two-component system sensor protein, without kinase domain BT1216 SWALL:Q8A8F1 (EMBL:AE016931) (357 aa) fasta scores: E(): 1.3e-25, 32.28% id in 381 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein precursor YehU or B2126 or C2656 or SF2198 or S2325 SWALL:YEHU_ECOLI (SWALL:P33357) (561 aa) fasta scores: E(): 8e-13, 28.83% id in 274 aa; putative two component system, sensor protein 3753204 3286593 BF9343_3111 Bacteroides fragilis NCTC 9343 putative two component system, sensor protein YP_212810.1 3752035 R 272559 CDS YP_212811.1 60682667 3286592 3753394..3754074 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1803 SWALL:Q8A6S3 (EMBL:AE016933) (226 aa) fasta scores: E(): 1.1e-67, 69.46% id in 226 aa, and to Chlorobium tepidum hypothetical protein CT0984 SWALL:Q8KDR1 (EMBL:AE012863) (230 aa) fasta scores: E(): 2.2e-08, 31.83% id in 245 aa; hypothetical protein 3754074 3286592 BF9343_3112 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212811.1 3753394 D 272559 CDS YP_212812.1 60682668 3286589 3754969..3758124 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries, e.g. putative outer membrane protein, probably involved in nutrient binding BT3174 SWALL:Q8A2Y1 (EMBL:AE016939) (1100 aa) fasta scores: E(): 1.8e-61, 32.72% id in 1088 aa, and to Bacteroides fragilis FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 4.6e-45, 28.4% id in 1130 aa; hypothetical protein 3758124 3286589 BF9343_3113 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212812.1 3754969 D 272559 CDS YP_212813.1 60682669 3286594 3758139..3759830 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries, e.g. putative outer membrane protein, probably involved in nutrient binding BT0030 SWALL:Q8ABT0 (EMBL:AE016926) (609 aa) fasta scores: E(): 1.1e-38, 32.43% id in 632 aa, and hypothetical protein BT1620 SWALL:Q8A7A5 (EMBL:AE016932) (618 aa) fasta scores: E(): 6.8e-18, 28.59% id in 633 aa; putative lipoprotein 3759830 3286594 BF9343_3114 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212813.1 3758139 D 272559 CDS YP_212814.1 60682670 3286591 3759907..3761787 1 NC_003228.3 Similar to Xanthomonas axonopodis hypothetical protein XAC1306 SWALL:Q8PMW9 (EMBL:AE011761) (642 aa) fasta scores: E(): 2.1e-83, 38.44% id in 632 aa, and to Porphyromonas gingivalis W83 alpha-1,3/4-fucosidase, putative PG1750 SWALL:AAQ66752 (EMBL:AE017178) (606 aa) fasta scores: E(): 7.5e-50, 37.74% id in 620 aa; putative lipoprotein 3761787 3286591 BF9343_3115 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212814.1 3759907 D 272559 CDS YP_212815.1 60682671 3286590 3762187..3763059 1 NC_003228.3 Similar to Megasphaera elsdenii electron transfer flavoprotein beta-subunit EtfB SWALL:ETFB_MEGEL (SWALL:O85691) (270 aa) fasta scores: E(): 1.9e-27, 42.17% id in 294 aa, and to Clostridium acetobutylicum electron transfer flavoprotein beta-subunit EtfB or CAC2710 SWALL:ETFB_CLOAB (SWALL:P52040) (259 aa) fasta scores: E(): 1.7e-26, 41.31% id in 288 aa; putative electron transfer flavoprotein beta-subunit 3763059 3286590 BF9343_3116 Bacteroides fragilis NCTC 9343 putative electron transfer flavoprotein beta-subunit YP_212815.1 3762187 D 272559 CDS YP_212816.1 60682672 3286599 3763075..3764094 1 NC_003228.3 Similar to Clostridium acetobutylicum electron transfer flavoprotein alpha-subunit EtfA or CAC2709 SWALL:ETFA_CLOAB (SWALL:P52039) (336 aa) fasta scores: E(): 7.7e-47, 45.97% id in 335 aa, and to Megasphaera elsdenii electron transfer flavoprotein alpha-subunit EtfA SWALL:ETFA_MEGEL (SWALL:O85692) (338 aa) fasta scores: E(): 7.1e-30, 42.13% id in 337 aa; putative electron transfer flavoprotein alpha-subunit 3764094 3286599 BF9343_3117 Bacteroides fragilis NCTC 9343 putative electron transfer flavoprotein alpha-subunit YP_212816.1 3763075 D 272559 CDS YP_212817.1 60682673 3286598 3764098..3765801 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 acyl-CoA dehydrogenase family protein PG0775 SWALL:AAQ65936 (EMBL:AE017174) (573 aa) fasta scores: E(): 2.1e-168, 72.35% id in 568 aa, and to Bacillus anthracis acyl-CoA dehydrogenase BA5246 SWALL:Q81XJ1 (EMBL:AE017040) (594 aa) fasta scores: E(): 1.6e-27, 31.83% id in 399 aa; putative acyl-CoA dehydrogenase 3765801 3286598 BF9343_3118 Bacteroides fragilis NCTC 9343 putative acyl-CoA dehydrogenase YP_212817.1 3764098 D 272559 CDS YP_212818.1 60682674 3286595 3766034..3770059 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 beta-galactosidase LacZ-2 or PG0896 SWALL:AAQ66038 (EMBL:AE017175) (1017 aa) fasta scores: E(): 4.5e-54, 30.4% id in 1069 aa, and to Enterococcus faecalis glycosyl hydrolase, family 2 EF2709 SWALL:Q830R3 (EMBL:AE016955) (1025 aa) fasta scores: E(): 8.6e-50, 31.56% id in 1112 aa; putative exported beta-galactosidase 3770059 3286595 BF9343_3119 Bacteroides fragilis NCTC 9343 putative exported beta-galactosidase YP_212818.1 3766034 D 272559 CDS YP_212819.1 60682675 3286600 complement(3770204..3770515) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1811 SWALL:Q8A6R5 (EMBL:AE016933) (107 aa) fasta scores: E(): 3.3e-30, 78.84% id in 104 aa; hypothetical protein 3770515 3286600 BF9343_3120 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212819.1 3770204 R 272559 CDS YP_212820.1 60682676 3286596 complement(3770531..3771472) 1 NC_003228.3 Similar to Deinococcus proteolyticus chaperone protein DnaJ SWALL:DNAJ_DEIPR (SWALL:O34136) (307 aa) fasta scores: E(): 2.9e-27, 38.88% id in 324 aa, and to Streptomyces coelicolor chaperone protein DnaJ or SCO3669 or SCH44.09c SWALL:DNAJ_STRCO (SWALL:P40170) (399 aa) fasta scores: E(): 9.9e-14, 34.98% id in 383 aa; putative chaperone 3771472 3286596 BF9343_3121 Bacteroides fragilis NCTC 9343 putative chaperone YP_212820.1 3770531 R 272559 CDS YP_212821.1 60682677 3286597 complement(3771774..3773405) 1 NC_003228.3 Similar to the C-terminal region of Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT4057 SWALL:Q8A0G4 (EMBL:AE016943) (921 aa) fasta scores: E(): 1.9e-51, 38.49% id in 517 aa, and of Rhizobium loti hybrid sensory histidine kinase MLL3725 SWALL:Q98FL1 (EMBL:AP003002) (1391 aa) fasta scores: E(): 2.7e-35, 30.35% id in 514 aa; putative two-component system, sensor kinase 3773405 3286597 BF9343_3122 Bacteroides fragilis NCTC 9343 putative two-component system, sensor kinase YP_212821.1 3771774 R 272559 CDS YP_212822.1 60682678 3286604 complement(3773704..3775404) 1 NC_003228.3 Similar to Pseudomonas syringae membrane protein, putative PSPto3923 SWALL:Q87Y80 (EMBL:AE016870) (547 aa) fasta scores: E(): 6.5e-31, 30.94% id in 488 aa, and to Rickettsia sibirica hypothetical protein RSIB_ORF.250 SWALL:EAA25508 (EMBL:AABW01000001) (522 aa) fasta scores: E(): 1.3e-30, 27.99% id in 493 aa; putative sulfatase 3775404 3286604 BF9343_3123 Bacteroides fragilis NCTC 9343 putative sulfatase YP_212822.1 3773704 R 272559 CDS YP_212823.1 60682679 3286605 complement(3775391..3776611) 1 NC_003228.3 Similar to Salmonella typhi hypothetical protein STY3949 or T3690 SWALL:Q8Z2M8 (EMBL:AL627280) (379 aa) fasta scores: E(): 3.8e-39, 34.97% id in 366 aa, and to Vibrio vulnificus outer membrane protein/protective antigen OMA87 VV21386 SWALL:Q8D4C1 (EMBL:AE016813) (371 aa) fasta scores: E(): 1.8e-36, 33.23% id in 355 aa; hypothetical protein 3776611 3286605 BF9343_3124 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212823.1 3775391 R 272559 CDS YP_212824.1 60682680 3286606 3777355..3779568 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative thioredoxin family protein BT3322 SWALL:Q8A2I3 (EMBL:AE016940) (870 aa) fasta scores: E(): 2.9e-07, 23.14% id in 648 aa, and to Porphyromonas gingivalis W83 thioredoxin family protein PG1638 SWALL:AAQ66661 (EMBL:AE017177) (328 aa) fasta scores: E(): 3.5e-05, 24.23% id in 260 aa; hypothetical protein 3779568 3286606 BF9343_3125 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212824.1 3777355 D 272559 CDS YP_212825.1 60682681 3286601 complement(3779688..3780701) 1 NC_003228.3 Similar to Pseudomonas sp. low-specificity L-threonine aldolase LtaE or LtaP SWALL:LTAE_PSESP (SWALL:O50584) (346 aa) fasta scores: E(): 2.1e-46, 40.9% id in 330 aa, and to Ralstonia solanacearum probable low specificity L-threonine aldolase protein LtaA or RSC0808 or RS05014 SWALL:Q8Y182 (EMBL:AL646061) (345 aa) fasta scores: E(): 4.3e-46, 40.89% id in 335 aa; putative aldolase 3780701 3286601 BF9343_3126 Bacteroides fragilis NCTC 9343 putative aldolase YP_212825.1 3779688 R 272559 CDS YP_212826.1 60682682 3286602 complement(3780791..3781162) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1816 SWALL:Q8A6R0 (EMBL:AE016933) (124 aa) fasta scores: E(): 3.6e-21, 57.02% id in 121 aa; hypothetical protein 3781162 3286602 BF9343_3127 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212826.1 3780791 R 272559 CDS YP_212827.1 60682683 3286603 complement(3781162..3781713) 1 NC_003228.3 Similar to Bacillus subtilis RNA polymerase sigma factor SigW or BSU01730 SWALL:SIGW_BACSU (SWALL:Q45585) (187 aa) fasta scores: E(): 1.8e-11, 30.85% id in 175 aa, and to Pseudomonas aeruginosa RNA polymerase sigma-H factor AlgU or AlgT or PA0762 SWALL:RPSH_PSEAE (SWALL:Q06198) (193 aa) fasta scores: E(): 4e-11, 30.22% id in 182 aa; putative RNA polymerase sigma factor 3781713 3286603 BF9343_3128 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_212827.1 3781162 R 272559 CDS YP_212828.1 60682684 3286610 3781844..3782272 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1818 SWALL:Q8A6Q8 (EMBL:AE016933) (138 aa) fasta scores: E(): 5e-23, 51.06% id in 141 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1662 SWALL:AAQ66681 (EMBL:AE017177) (124 aa) fasta scores: E(): 4e-05, 33.07% id in 127 aa; hypothetical protein 3782272 3286610 BF9343_3129 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212828.1 3781844 D 272559 CDS YP_212829.1 60682685 3286611 complement(3782395..3782613) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1819 SWALL:Q8A6Q7 (EMBL:AE016933) (72 aa) fasta scores: E(): 2.7e-22, 77.77% id in 72 aa, and to Bacteroides thetaiotaomicron hypothetical protein P5482_23 SWALL:Q8ABX5 (EMBL:AY171301) (78 aa) fasta scores: E(): 1.1e-09, 46.75% id in 77 aa; hypothetical protein 3782613 3286611 BF9343_3130 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212829.1 3782395 R 272559 CDS YP_212830.1 60682686 3287786 3782854..3784593 1 NC_003228.3 Similar to Escherichia coli pyruvate dehydrogenase [cytochrome] PoxB or B0871 SWALL:POXB_ECOLI (SWALL:P07003) (572 aa) fasta scores: E(): 2e-107, 48.25% id in 572 aa, and to Lactobacillus plantarum pyruvate oxidase Pox5 or LP_3589 SWALL:POXB_LACPL (SWALL:P37063) (603 aa) fasta scores: E(): 2e-47, 32.44% id in 527 aa; putative pyruvate dehydrogenase [cytochrome] 3784593 poxB 3287786 poxB Bacteroides fragilis NCTC 9343 putative pyruvate dehydrogenase [cytochrome] YP_212830.1 3782854 D 272559 CDS YP_212831.1 60682687 3286612 complement(3784823..3785398) 1 NC_003228.3 Similar to Methanosarcina acetivorans iron-sulfur flavoprotein ISF-1 or MA0327 SWALL:Q8TTU8 (EMBL:AE010691) (191 aa) fasta scores: E(): 2.2e-36, 52.1% id in 190 aa, and to Chlorobium tepidum hypothetical protein CT1300 SWALL:Q8KCW0 (EMBL:AE012890) (192 aa) fasta scores: E(): 4.4e-34, 46.87% id in 192 aa; putative flavoprotein 3785398 3286612 BF9343_3132 Bacteroides fragilis NCTC 9343 putative flavoprotein YP_212831.1 3784823 R 272559 CDS YP_212832.1 60682688 3286607 complement(3785596..3785958) 1 NC_003228.3 hypothetical protein 3785958 3286607 BF9343_3133 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212832.1 3785596 R 272559 CDS YP_212833.1 60682689 3286608 complement(3786072..3786623) 1 NC_003228.3 hypothetical protein 3786623 3286608 BF9343_3134 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212833.1 3786072 R 272559 CDS YP_212834.1 60682690 3286609 complement(3786649..3787950) 1 NC_003228.3 hypothetical protein 3787950 3286609 BF9343_3135 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212834.1 3786649 R 272559 CDS YP_212835.1 60682691 3289189 complement(3787952..3789589) 1 NC_003228.3 Similar to Bacteroides forsythus 60 kDa chaperonin GroL or GroEL or MopA SWALL:CH60_BACFO (SWALL:P81284) (543 aa) fasta scores: E(): 2.6e-141, 79.22% id in 544 aa, and to Porphyromonas gingivalis 60 kDa chaperonin GroL or GroEL or MopA or PG0520 SWALL:CH60_PORGI (SWALL:P42375) (545 aa) fasta scores: E(): 2.7e-142, 79.08% id in 545 aa; 60 kDa chaperonin 3789589 groEL 3289189 groEL Bacteroides fragilis NCTC 9343 60 kDa chaperonin YP_212835.1 3787952 R 272559 CDS YP_212836.1 60682692 3287912 complement(3789632..3789904) 1 NC_003228.3 Similar to Porphyromonas gingivalis 10 kDa chaperonin GroS or GroES or PG0521 SWALL:CH10_PORGI (SWALL:P42376) (89 aa) fasta scores: E(): 9.2e-26, 83.14% id in 89 aa, and to Chlorobium tepidum 10 kDa chaperonin GroS or GroES or GroES-1 or CT0529 SWALL:CH10_CHLTE (SWALL:Q8KF03) (95 aa) fasta scores: E(): 1.8e-19, 65.26% id in 95 aa; 10 kDa chaperonin 3789904 groES 3287912 groES Bacteroides fragilis NCTC 9343 10 kDa chaperonin YP_212836.1 3789632 R 272559 CDS YP_212837.1 60682693 3286618 3790586..3791785 1 NC_003228.3 No significant database matches. Trimmed by JP. will need signal sequence marking up - marked with data from PSORT but needs script run; putative lipoprotein 3791785 3286618 BF9343_3138 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212837.1 3790586 D 272559 CDS YP_212838.1 60682694 3286620 3791816..3792955 1 NC_003228.3 putative lipoprotein 3792955 3286620 BF9343_3139 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212838.1 3791816 D 272559 CDS YP_212839.1 60682695 3286619 3792969..3794102 1 NC_003228.3 putative lipoprotein 3794102 3286619 BF9343_3140 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212839.1 3792969 D 272559 CDS YP_212840.1 60682696 3286615 3794123..3795202 1 NC_003228.3 hypothetical protein 3795202 3286615 BF9343_3141 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212840.1 3794123 D 272559 CDS YP_212841.1 60682697 3286616 3795202..3796104 1 NC_003228.3 putative lipoprotein 3796104 3286616 BF9343_3142 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212841.1 3795202 D 272559 CDS YP_212842.1 60682698 3286617 3796178..3798166 1 NC_003228.3 hypothetical protein 3798166 3286617 BF9343_3143 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212842.1 3796178 D 272559 CDS YP_212843.1 60682699 3286627 3798170..3798712 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1066 SWALL:Q8A8V1 (EMBL:AE016930) (189 aa) fasta scores: E(): 3.2e-11, 44.27% id in 192 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2130 SWALL:AAQ67085 (EMBL:AE017179) (193 aa) fasta scores: E(): 1.3e-10, 41.75% id in 194 aa; hypothetical protein 3798712 3286627 BF9343_3144 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212843.1 3798170 D 272559 CDS YP_212844.1 60682700 3286613 complement(3798899..3799780) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0778 SWALL:Q8A9N7 (EMBL:AE016929) (295 aa) fasta scores: E(): 2.4e-92, 77.08% id in 288 aa, and to Gloeobacter violaceus protein GLR2153 SWALL:BAC90094 (EMBL:AP006575) (306 aa) fasta scores: E(): 2.5e-64, 54.7% id in 287 aa; hypothetical protein 3799780 3286613 BF9343_3145 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212844.1 3798899 R 272559 CDS YP_212845.1 60682701 3286614 complement(3800109..3800687) 1 NC_003228.3 hypothetical protein 3800687 3286614 BF9343_3146 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212845.1 3800109 R 272559 CDS YP_212846.1 60682702 3286624 complement(3800698..3801171) 1 NC_003228.3 Similar to Xanthomonas campestris RNA polymerase ECF-type sigma factor RfaY or XCC2643 SWALL:Q8P7G8 (EMBL:AE012376) (166 aa) fasta scores: E(): 6e-17, 35.4% id in 161 aa, and to Bacillus subtilis RNA polymerase sigma factor SigV or BSU27120 SWALL:SIGV_BACSU (SWALL:O05404) (166 aa) fasta scores: E(): 3.1e-08, 29.87% id in 154 aa; putative RNA polymerase sigma factor 3801171 3286624 BF9343_3147 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_212846.1 3800698 R 272559 CDS YP_212847.1 60682703 3286625 complement(3802232..3803272) 1 NC_003228.3 Low similarity to Methanosarcina mazei integral membrane protein MM0377 SWALL:Q8PZW2 (EMBL:AE013263) (350 aa) fasta scores: E(): 1.7e-15, 27.48% id in 342 aa, and to Archaeoglobus fulgidus hypothetical protein AF2231 SWALL:YM31_ARCFU (SWALL:O28052) (328 aa) fasta scores: E(): 1.9e-15, 25.9% id in 332 aa; hypothetical protein 3803272 3286625 BF9343_3148 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212847.1 3802232 R 272559 CDS YP_212848.1 60682704 3286626 complement(3803281..3804432) 1 NC_003228.3 Similar to Listeria monocytogenes hypothetical protein LMO2555 SWALL:Q8Y499 (EMBL:AL591983) (427 aa) fasta scores: E(): 1.8e-21, 26.46% id in 393 aa, and to Lactococcus lactis lipopolysaccharide biosynthesis protein YwaG or LL2138 SWALL:Q9CDS5 (EMBL:AE006442) (446 aa) fasta scores: E(): 9.7e-19, 26.59% id in 391 aa; putative glycosyl transferase 3804432 3286626 BF9343_3149 Bacteroides fragilis NCTC 9343 putative glycosyl transferase YP_212848.1 3803281 R 272559 CDS YP_212849.1 60682705 3286633 3804735..3806918 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1878 SWALL:Q8A6K3 (EMBL:AE016933) (733 aa) fasta scores: E(): 0, 75.23% id in 731 aa, and to Porphyromonas gingivalis W83 alpha-1,2-mannosidase family protein PG0902 SWALL:AAQ66044 (EMBL:AE017175) (741 aa) fasta scores: E(): 9.3e-98, 39.43% id in 743 aa; hypothetical protein 3806918 3286633 BF9343_3150 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212849.1 3804735 D 272559 CDS YP_212850.1 60682706 3286621 3806942..3809479 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative alanyl dipeptidyl peptidase BT1838 SWALL:Q8A6N9 (EMBL:AE016933) (840 aa) fasta scores: E(): 0, 82.02% id in 840 aa, and to Porphyromonas gingivalis W83 conserved domain protein PG1754 SWALL:AAQ66756 (EMBL:AE017178) (841 aa) fasta scores: E(): 6.1e-119, 39.1% id in 849 aa; conserved exported protein 3809479 3286621 BF9343_3151 Bacteroides fragilis NCTC 9343 conserved exported protein YP_212850.1 3806942 D 272559 CDS YP_212851.1 60682707 3286622 complement(3809735..3811099) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 histidyl-tRNA synthetase HisS or PG2062 SWALL:AAQ67023 (EMBL:AE017179) (454 aa) fasta scores: E(): 1.4e-113, 66.59% id in 443 aa, and to Clostridium tetani histidyl-tRNA synthetase HisS or CTC01958 SWALL:SYH_CLOTE (SWALL:Q892X7) (439 aa) fasta scores: E(): 7.5e-42, 37.16% id in 452 aa; putative histidyl-tRNA synthetase 3811099 3286622 BF9343_3152 Bacteroides fragilis NCTC 9343 putative histidyl-tRNA synthetase YP_212851.1 3809735 R 272559 CDS YP_212852.1 60682708 3286630 3811195..3812583 1 NC_003228.3 hypothetical protein 3812583 3286630 BF9343_3153 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212852.1 3811195 D 272559 CDS YP_212853.1 60682709 3286631 complement(3812686..3813840) 1 NC_003228.3 putative lipoprotein 3813840 3286631 BF9343_3154 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212853.1 3812686 R 272559 CDS YP_212854.1 60682710 3286632 complement(3814132..3814818) 1 NC_003228.3 Similar to Oceanobacillus iheyensis hypothetical conserved protein OB1771 SWALL:Q8EQD0 (EMBL:AP004599) (226 aa) fasta scores: E(): 8.7e-34, 45.74% id in 223 aa, and to Bacillus halodurans hypothetical protein BH1677 SWALL:Q9KC96 (EMBL:AP001512) (224 aa) fasta scores: E(): 2.2e-30, 43.49% id in 223 aa; hypothetical protein 3814818 3286632 BF9343_3155 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212854.1 3814132 R 272559 CDS YP_212855.1 60682711 3286629 complement(3814937..3816241) 1 NC_003228.3 Similar to Streptomyces coelicolor putative glycosyl hydrolase SCO0279 or SCF85.07 SWALL:Q9S2D4 (EMBL:AL939104) (423 aa) fasta scores: E(): 4.1e-25, 31.49% id in 362 aa, and to Dictyostelium discoideum alpha-L-fucosidase precursor AlfA SWALL:FUCO_DICDI (SWALL:P10901) (461 aa) fasta scores: E(): 2.4e-08, 27.34% id in 479 aa; putative exported alpha-L-fucosidase protein 3816241 3286629 BF9343_3156 Bacteroides fragilis NCTC 9343 putative exported alpha-L-fucosidase protein YP_212855.1 3814937 R 272559 CDS YP_212856.1 60682712 3289325 complement(3816379..3817650) 1 NC_003228.3 Similar to Chlorobium tepidum adenylosuccinate synthetase PurA or CT2154 SWALL:PURA_CHLTE (SWALL:Q8KAK6) (435 aa) fasta scores: E(): 1.5e-75, 48.81% id in 422 aa, and to Porphyromonas gingivalis W83 adenylosuccinate synthetase PurA or PG0464 SWALL:AAQ65661 (EMBL:AE017173) (423 aa) fasta scores: E(): 1.2e-124, 73.5% id in 419 aa; putative adenylosuccinate synthetase 3817650 purA 3289325 purA Bacteroides fragilis NCTC 9343 putative adenylosuccinate synthetase YP_212856.1 3816379 R 272559 CDS YP_212857.1 60682713 3286638 complement(3817647..3818135) 1 NC_003228.3 Similar to Campylobacter jejuni ferric uptake regulation protein Fur or CJ0400 SWALL:FUR_CAMJE (SWALL:P48796) (157 aa) fasta scores: E(): 1.1e-11, 31.64% id in 158 aa, and to Bacillus subtilis peroxide operon regulator PerR or BSU08730 SWALL:PERR_BACSU (SWALL:P71086) (145 aa) fasta scores: E(): 9.2e-09, 30.59% id in 134 aa; putative iron storage-related regulatory protein 3818135 3286638 BF9343_3158 Bacteroides fragilis NCTC 9343 putative iron storage-related regulatory protein YP_212857.1 3817647 R 272559 CDS YP_212858.1 60682714 3286639 3818231..3819898 1 NC_003228.3 Similar to Fusobacterium nucleatum integral membrane protein FN1262 SWALL:Q8RE62 (EMBL:AE010632) (519 aa) fasta scores: E(): 5.9e-36, 27.83% id in 503 aa, and to Escherichia coli hypothetical protein YfbI or B2257 SWALL:YFBI_ECOLI (SWALL:P76473) (550 aa) fasta scores: E(): 1.1e-11, 23.46% id in 422 aa; hypothetical protein 3819898 3286639 BF9343_3159 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212858.1 3818231 D 272559 CDS YP_212859.1 60682715 3286628 complement(3819996..3820658) 1 NC_003228.3 Only significantly similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1845 SWALL:Q8A6N2 (EMBL:AE016933) (221 aa) fasta scores: E(): 4e-72, 80% id in 220 aa; hypothetical protein 3820658 3286628 BF9343_3160 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212859.1 3819996 R 272559 CDS YP_212860.1 60682716 3286635 complement(3820662..3822713) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron putative dipeptidyl-peptidase III BT1846 SWALL:Q8A6N1 (EMBL:AE016933) (675 aa) fasta scores: E(): 0, 82.54% id in 676 aa, and to Porphyromonas gingivalis W83 peptidase, M49 family PG0317 SWALL:AAQ65532 (EMBL:AE017173) (886 aa) fasta scores: E(): 7.5e-121, 50.07% id in 651 aa. Note: The rest of the databases matches are to eukaryotic proteins entries; putative membrane attached peptidase 3822713 3286635 BF9343_3161 Bacteroides fragilis NCTC 9343 putative membrane attached peptidase YP_212860.1 3820662 R 272559 CDS YP_212861.1 60682717 3286636 complement(3822806..3823270) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator, AraC/XylS family BT1847 SWALL:Q8A6N0 (EMBL:AE016933) (154 aa) fasta scores: E(): 1.8e-54, 95.45% id in 154 aa, and to Clostridium tetani transcriptional regulatory protein CTC01849 SWALL:Q893H5 (EMBL:AE015942) (259 aa) fasta scores: E(): 0.00026, 32.03% id in 103 aa; putative AraC-family regulatory protein 3823270 3286636 BF9343_3162 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212861.1 3822806 R 272559 CDS YP_212862.1 60682718 3287974 3823486..3825309 1 NC_003228.3 Similar to Escherichia coli ATP-dependent DNA helicase RecQ or B3822 SWALL:RECQ_ECOLI (SWALL:P15043) (607 aa) fasta scores: E(): 4.4e-90, 43.7% id in 604 aa, and to Coxiella burnetii ATP-dependent DNA helicase RecQ or CBU0472 SWALL:Q83E59 (EMBL:AE016961) (601 aa) fasta scores: E(): 1.8e-101, 45.14% id in 607 aa; putative ATP-dependent DNA helicase 3825309 recQ2 3287974 recQ2 Bacteroides fragilis NCTC 9343 putative ATP-dependent DNA helicase YP_212862.1 3823486 D 272559 CDS YP_212863.1 60682719 3286637 complement(3825704..3826573) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron tpr-repeat-containing protein BT1851 SWALL:Q8A6M6 (EMBL:AE016933) (272 aa) fasta scores: E(): 5.5e-72, 72.42% id in 272 aa, and to Porphyromonas gingivalis W83 TPR domain protein PG1967 SWALL:AAQ66943 (EMBL:AE017178) (295 aa) fasta scores: E(): 5.1e-14, 28.04% id in 271 aa; putative TPR repeat domain exported protein 3826573 3286637 BF9343_3164 Bacteroides fragilis NCTC 9343 putative TPR repeat domain exported protein YP_212863.1 3825704 R 272559 CDS YP_212864.1 60682720 3286644 complement(3826630..3827580) 1 NC_003228.3 Similar to Mycobacterium tuberculosis, and Mycobacterium bovis cysteine synthase A CysK or Rv2334 or MT2397 or MTCY98.03 or MB2362 SWALL:CYSK_MYCTU (SWALL:P95230) (310 aa) fasta scores: E(): 2e-57, 57.51% id in 306 aa, and to Solanum tuberosum cysteine synthase, chloroplast precursor SWALL:CYSL_SOLTU (SWALL:O81155) (386 aa) fasta scores: E(): 1.5e-56, 55.22% id in 306 aa; putative cysteine synthase 3827580 3286644 BF9343_3165 Bacteroides fragilis NCTC 9343 putative cysteine synthase YP_212864.1 3826630 R 272559 CDS YP_212865.1 60682721 3286645 3827749..3829509 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative sulfatase BT1853 SWALL:Q8A6M4 (EMBL:AE016933) (585 aa) fasta scores: E(): 5.8e-170, 69.79% id in 586 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2021 SWALL:AAQ66988 (EMBL:AE017179) (643 aa) fasta scores: E(): 3.1e-78, 38.82% id in 595 aa; putative membrane attached sulfatase protein 3829509 3286645 BF9343_3166 Bacteroides fragilis NCTC 9343 putative membrane attached sulfatase protein YP_212865.1 3827749 D 272559 CDS YP_212866.1 60682722 3286634 3829534..3830199 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 PAP2 superfamily protein PG1587 SWALL:AAQ66617 (EMBL:AE017177) (238 aa) fasta scores: E(): 2.9e-18, 34.39% id in 189 aa, and to Methanosarcina acetivorans type 2 phosphatidic acid phosphatase PAP2 MA4148 SWALL:Q8TIK1 (EMBL:AE011126) (176 aa) fasta scores: E(): 1.2e-05, 30% id in 190 aa; hypothetical protein 3830199 3286634 BF9343_3167 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212866.1 3829534 D 272559 CDS YP_212867.1 60682723 3286641 3830376..3830702 1 NC_003228.3 hypothetical protein 3830702 3286641 BF9343_3168 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212867.1 3830376 D 272559 CDS YP_212868.1 60682724 18501139 3830412..3830702 1 NC_003228.3 hypothetical protein 3830702 18501139 BF9343_3169 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212868.1 3830412 D 272559 CDS YP_212869.1 60682725 3286642 3830823..3832934 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1420 SWALL:Q8A7V4 (EMBL:AE016931) (718 aa) fasta scores: E(): 2.8e-13, 24.76% id in 747 aa, and to Bordetella parapertussis putative outer membrane protein BPP0186 SWALL:CAE39927 (EMBL:BX640423) (711 aa) fasta scores: E(): 1.9e-10, 21.85% id in 604 aa; hypothetical protein 3832934 3286642 BF9343_3170 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212869.1 3830823 D 272559 CDS YP_212870.1 60682726 3286643 3833014..3834000 1 NC_003228.3 hypothetical protein 3834000 3286643 BF9343_3171 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212870.1 3833014 D 272559 CDS YP_212871.1 60682727 3286653 complement(3834222..3835841) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0451 SWALL:Q8AAL3 (EMBL:AE016927) (553 aa) fasta scores: E(): 5.6e-21, 26.49% id in 570 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2195 SWALL:Q8A5P3 (EMBL:AE016935) (580 aa) fasta scores: E(): 6.2e-20, 27.01% id in 596 aa; hypothetical protein 3835841 3286653 BF9343_3172 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212871.1 3834222 R 272559 CDS YP_212872.1 60682728 3286654 complement(3835854..3839033) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries such as putative outer membrane protein, probably involved in nutrient binding BT2196 SWALL:Q8A5P2 (EMBL:AE016935) (1120 aa) fasta scores: E(): 1e-89, 30.37% id in 1080 aa, and putative outer membrane protein, probably involved in nutrient binding BT3604 SWALL:Q8A1Q5 (EMBL:AE016941) (1051 aa) fasta scores: E(): 9.7e-87, 35.17% id in 1049 aa; hypothetical protein 3839033 3286654 BF9343_3173 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212872.1 3835854 R 272559 CDS YP_212873.1 60682729 3286640 complement(3839906..3840916) 1 NC_003228.3 Similar to Bacteroides fragilis putative UDP-glucuronic acid epimerase WcfX SWALL:Q9F759 (EMBL:AF285774) (350 aa) fasta scores: E(): 4.5e-61, 59.02% id in 349 aa, and to Staphylococcus aureus CapI protein SWALL:CAPI_STAAU (SWALL:P39858) (334 aa) fasta scores: E(): 4.7e-41, 52.28% id in 350 aa; putative UDP-glucuronic acid epimerase 3840916 3286640 BF9343_3174 Bacteroides fragilis NCTC 9343 putative UDP-glucuronic acid epimerase YP_212873.1 3839906 R 272559 CDS YP_212874.1 60682730 3286648 complement(3840930..3842483) 1 NC_003228.3 Similar to Fusobacterium nucleatum subsp. vincentii ATCC 49256 transporter FNV1045 SWALL:EAA24330 (EMBL:AABF01000038) (369 aa) fasta scores: E(): 7.9e-26, 30.58% id in 327 aa, and to Escherichia coli hypothetical protein YfbI or B2257 SWALL:YFBI_ECOLI (SWALL:P76473) (550 aa) fasta scores: E(): 1.4e-12, 23.79% id in 437 aa; hypothetical protein 3842483 3286648 BF9343_3175 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212874.1 3840930 R 272559 CDS YP_212875.1 60682731 3286651 complement(3842473..3843120) 1 NC_003228.3 Similar to the N-terminal region of Chlamydia pneumoniae lipid-A-disaccharide synthase LpxB or PN0965 or CP0895 or CPB1002 SWALL:LPXB_CHLPN (SWALL:Q9Z6U3) (604 aa) fasta scores: E(): 1.2e-13, 31.19% id in 218 aa; putative transport-related, membrane protein 3843120 3286651 BF9343_3176 Bacteroides fragilis NCTC 9343 putative transport-related, membrane protein YP_212875.1 3842473 R 272559 CDS YP_212876.1 60682732 3286652 complement(3843125..3843859) 1 NC_003228.3 Similar to Fusobacterium nucleatum subsp. vincentii ATCC 49256 dolichol-phosphate mannosyltransferase FNV1052 SWALL:EAA24337 (EMBL:AABF01000038) (237 aa) fasta scores: E(): 2.7e-32, 39.56% id in 230 aa, and to Escherichia coli glycosyl transferase ArnC or PmrF or B2254 SWALL:ARNC_ECOLI (SWALL:P77757) (322 aa) fasta scores: E(): 5.1e-13, 29.16% id in 216 aa; putative glycosyl transferase 3843859 3286652 BF9343_3177 Bacteroides fragilis NCTC 9343 putative glycosyl transferase YP_212876.1 3843125 R 272559 CDS YP_212877.1 60682733 3287842 complement(3844077..3845138) 1 NC_003228.3 Identical to the previously sequenced Bacteroides fragilis 3-isopropylmalate dehydrogenase LeuB SWALL:LEU3_BACFR (SWALL:P54354) (353 aa) fasta scores: E(): 1.4e-138, 100% id in 353 aa, and to Bacillus subtilis 3-isopropylmalate dehydrogenase LeuB or LeuC or BSU28270 SWALL:LEU3_BACSU (SWALL:P05645) (365 aa) fasta scores: E(): 2.6e-59, 48.36% id in 337 aa; putative 3-isopropylmalate dehydrogenase 3845138 leuB 3287842 leuB Bacteroides fragilis NCTC 9343 putative 3-isopropylmalate dehydrogenase YP_212877.1 3844077 R 272559 CDS YP_212878.1 60682734 3286660 complement(3845151..3846653) 1 NC_003228.3 Similar to Leptospira interrogans alpha-isopropylmalate synthase CimA or LA2350 SWALL:Q8F3Q1 (EMBL:AE011404) (516 aa) fasta scores: E(): 1.3e-97, 52.78% id in 502 aa, and to Bacillus halodurans 2-isopropylmalate synthase LeuA or BH3058 SWALL:LEU1_BACHD (SWALL:Q9K8E8) (515 aa) fasta scores: E(): 1.4e-35, 29.88% id in 502 aa; putative alpha-isopropylmalate synthase 2 3846653 3286660 BF9343_3179 Bacteroides fragilis NCTC 9343 putative alpha-isopropylmalate synthase 2 YP_212878.1 3845151 R 272559 CDS YP_212879.1 60682735 3289223 complement(3846659..3847249) 1 NC_003228.3 Similar to Escherichia coli 3-isopropylmalate dehydratase small subunit LeuD or B0071 SWALL:LEUD_ECOLI (SWALL:P30126) (200 aa) fasta scores: E(): 5.8e-30, 47.39% id in 192 aa, and to Salmonella typhi 3-isopropylmalate dehydratase small subunit LeuD or STY0129 or t0114 SWALL:LEUD_SALTI (SWALL:Q8Z9I3) (201 aa) fasta scores: E(): 4.5e-31, 47.17% id in 195 aa; putative 3-isopropylmalate dehydratase small subunit 3847249 leuD 3289223 leuD Bacteroides fragilis NCTC 9343 putative 3-isopropylmalate dehydratase small subunit YP_212879.1 3846659 R 272559 CDS YP_212880.1 60682736 3289213 complement(3847362..3848756) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 3-isopropylmalate dehydratase large subunit LeuC or B0072 or C0089 SWALL:LEU2_ECOLI (SWALL:P30127) (465 aa) fasta scores: E(): 7.8e-95, 54.11% id in 462 aa, and to Brucella suis 3-isopropylmalate dehydratase, large subunit LeuC or BR1906 SWALL:Q8FYG9 (EMBL:AE014480) (469 aa) fasta scores: E(): 3.7e-102, 57.7% id in 461 aa; putative 3-isopropylmalate dehydratase large subunit 3848756 leuC 3289213 leuC Bacteroides fragilis NCTC 9343 putative 3-isopropylmalate dehydratase large subunit YP_212880.1 3847362 R 272559 CDS YP_212881.1 60682737 3289204 complement(3848804..3850300) 1 NC_003228.3 Similar to Escherichia coli 2-isopropylmalate synthase LeuA or B0074 SWALL:LEU1_ECOLI (SWALL:P09151) (522 aa) fasta scores: E(): 4.2e-82, 49.19% id in 498 aa, and to Vibrio vulnificus 2-isopropylmalate synthase LeuA or VV10654 SWALL:LEU1_VIBVU (SWALL:Q8DEE1) (515 aa) fasta scores: E(): 7.2e-86, 50.49% id in 501 aa; putative 2-isopropylmalate synthase 1 3850300 leuA 3289204 leuA Bacteroides fragilis NCTC 9343 putative 2-isopropylmalate synthase 1 YP_212881.1 3848804 R 272559 CDS YP_212882.1 60682738 3286646 complement(3850702..3850974) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1862 SWALL:Q8A6L5 (EMBL:AE016933) (80 aa) fasta scores: E(): 1e-07, 44.68% id in 94 aa; putative lipoprotein 3850974 3286646 BF9343_3183 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212882.1 3850702 R 272559 CDS YP_212883.1 60682739 3286647 complement(3856448..3856675) 1 NC_003228.3 Doubtful CDS. No significant database matches; hypothetical protein 3856675 3286647 BF9343_3184 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212883.1 3856448 R 272559 CDS YP_212884.1 60682740 3286658 3856770..3856952 1 NC_003228.3 Doubtful CDS. No significant database matches; hypothetical protein 3856952 3286658 BF9343_3185 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212884.1 3856770 D 272559 CDS YP_212885.1 60682741 3286659 3857687..3858199 1 NC_003228.3 Similar to Chlorobium tepidum hypothetical protein CT1328 SWALL:Q8KCT3 (EMBL:AE012892) (164 aa) fasta scores: E(): 3.2e-21, 40.58% id in 170 aa, and to Thermoanaerobacter tengcongensis hypothetical protein TTE2230 SWALL:Q8R809 (EMBL:AE013167) (160 aa) fasta scores: E(): 1.4e-20, 41.55% id in 154 aa; putative bacterioferritin-related protein 3858199 3286659 BF9343_3186 Bacteroides fragilis NCTC 9343 putative bacterioferritin-related protein YP_212885.1 3857687 D 272559 CDS YP_212886.1 60682742 3287482 3858437..3860215 1 NC_003228.3 Similar to Escherichia coli protease IV SppA or B1766 SWALL:SPPA_ECOLI (SWALL:P08395) (618 aa) fasta scores: E(): 1.9e-52, 36.66% id in 570 aa, and to Porphyromonas gingivalis W83 signal peptide peptidase SppA, 67k type or PG0639 SWALL:AAQ65823 (EMBL:AE017174) (595 aa) fasta scores: E(): 1.8e-84, 44.57% id in 599 aa; putative protease IV 3860215 sppA 3287482 sppA Bacteroides fragilis NCTC 9343 putative protease IV YP_212886.1 3858437 D 272559 CDS YP_212887.1 60682743 3288941 3860224..3861354 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 tetraacyldisaccharide 4'-kinase LpxK or PG0638 SWALL:AAQ65822 (EMBL:AE017174) (357 aa) fasta scores: E(): 1e-57, 45.81% id in 358 aa, and to Escherichia coli tetraacyldisaccharide 4'-kinase LpxK or B0915 SWALL:LPXK_ECOLI (SWALL:P27300) (328 aa) fasta scores: E(): 2.3e-12, 27% id in 337 aa; putative tetraacyldisaccharide kinase (lipid A biosynthesis) related protein 3861354 3288941 BF9343_3188 Bacteroides fragilis NCTC 9343 putative tetraacyldisaccharide kinase (lipid A biosynthesis) related protein YP_212887.1 3860224 D 272559 CDS YP_212888.1 60682744 3287624 3861287..3862102 1 NC_003228.3 Similar to Bacillus subtilis purine nucleoside phosphorylase I PunA or Pnp or DeoD or BSU23490 SWALL:PUNA_BACSU (SWALL:P46354) (271 aa) fasta scores: E(): 3.6e-50, 51.11% id in 268 aa, and to Oceanobacillus iheyensis purine nucleoside phosphorylase Pnp or OB1845 SWALL:Q8EQ68 (EMBL:AP004599) (271 aa) fasta scores: E(): 1.6e-51, 53.23% id in 263 aa. Note: This CDS overlaps in its N-terminal region with the upstream CDS in 22 residues; putative purine nucleoside phosphorylase I 3862102 punA 3287624 punA Bacteroides fragilis NCTC 9343 putative purine nucleoside phosphorylase I YP_212888.1 3861287 D 272559 CDS YP_212889.1 60682745 3286655 3862130..3863164 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 thiamine monophosphate kinase ThiL or PG0637 SWALL:AAQ65821 (EMBL:AE017174) (346 aa) fasta scores: E(): 1.2e-90, 66.76% id in 337 aa, and to Bacillus subtilis thiamine-monophosphate kinase ThiL or BSU05900 SWALL:THIL_BACSU (SWALL:O05514) (325 aa) fasta scores: E(): 5.4e-19, 30.38% id in 339 aa; putative thiamine monophosphate kinase 3863164 3286655 BF9343_3190 Bacteroides fragilis NCTC 9343 putative thiamine monophosphate kinase YP_212889.1 3862130 D 272559 CDS YP_212890.1 60682746 3286657 complement(3864874..3866481) 1 NC_003228.3 hypothetical protein 3866481 3286657 BF9343_3192 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212890.1 3864874 R 272559 CDS YP_212891.1 60682747 3286667 complement(3866450..3867481) 1 NC_003228.3 hypothetical protein 3867481 3286667 BF9343_3193 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212891.1 3866450 R 272559 CDS YP_212892.1 60682748 3286664 complement(3867576..3867863) 1 NC_003228.3 Mostly similar to Bacteroides thetaiotaomicron database matches such as conserved hypothetical protein BT2336 SWALL:Q8A5A3 (EMBL:AE016935) (97 aa) fasta scores: E(): 1.3e-14, 49.45% id in 91 aa, and conserved hypothetical protein BT3139 SWALL:Q8A316 (EMBL:AE016939) (102 aa) fasta scores: E(): 1.8e-14, 43.61% id in 94 aa; hypothetical protein 3867863 3286664 BF9343_3194 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212892.1 3867576 R 272559 CDS YP_212893.1 60682749 3286665 complement(3867869..3868156) 1 NC_003228.3 Mostly similar to Bacteroides thetaiotaomicron databse matches, such as conserved hypothetical protein BT1129 SWALL:Q8A8N8 (EMBL:AE016930) (103 aa) fasta scores: E(): 2.9e-12, 50.57% id in 87 aa, and to Bacteroides fragilis hypothetical protein SWALL:Q8RM73 (EMBL:AY053505) (119 aa) fasta scores: E(): 1.8e-05, 36.55% id in 93 aa; hypothetical protein 3868156 3286665 BF9343_3195 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212893.1 3867869 R 272559 CDS YP_212894.1 60682750 3286666 3868701..3870017 1 NC_003228.3 Similar to the C-terminal region of Bacteroides thetaiotaomicron conserved hypothetical protein BT4734 SWALL:Q89YJ7 (EMBL:AE016946) (688 aa) fasta scores: E(): 4.1e-31, 31.64% id in 395 aa, and to Bacteroides thetaiotaomicron putative helicase BT4510 SWALL:Q89Z67 (EMBL:AE016945) (651 aa) fasta scores: E(): 3.5e-23, 29.3% id in 372 aa; hypothetical protein 3870017 3286666 BF9343_3196 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212894.1 3868701 D 272559 CDS YP_212895.1 60682751 3286663 3870353..3871387 1 NC_003228.3 Similar to Bacteroides fragilis strain LV25 DNA primase SWALL:Q8RM69 (EMBL:AY053505) (321 aa) fasta scores: E(): 4.4e-42, 44.22% id in 346 aa, and to Porphyromonas gingivalis W83 mobilizable transposon, excision protein, putative PG0841 SWALL:AAQ65992 (EMBL:AE017174) (297 aa) fasta scores: E(): 1e-18, 38.59% id in 298 aa; putative transposon-related/mobilisation protein 3871387 3286663 BF9343_3197 Bacteroides fragilis NCTC 9343 putative transposon-related/mobilisation protein YP_212895.1 3870353 D 272559 CDS YP_212896.1 60682752 3289235 3871545..3871928 1 NC_003228.3 Highly similar to the previously sequenced Bacteroides fragilis strain LV25 mobilization protein BmgB SWALL:Q8RM70 (EMBL:AY053505) (127 aa) fasta scores: E(): 7.6e-40, 84.25% id in 127 aa, and to Porphyromonas gingivalis W83 mobilization protein PG0869 SWALL:AAQ66016 (EMBL:AE017175) (117 aa) fasta scores: E(): 5e-09, 38.05% id in 113 aa; mobilization protein 3871928 bmgB 3289235 bmgB Bacteroides fragilis NCTC 9343 mobilization protein YP_212896.1 3871545 D 272559 CDS YP_212897.1 60682753 3289245 3871894..3872808 1 NC_003228.3 Highly similar to the previously sequenced Bacteroides fragilis strain LV25 mobilization protein BmgA SWALL:Q8RM71 (EMBL:AY053505) (308 aa) fasta scores: E(): 3.5e-90, 82.14% id in 308 aa, and to Porphyromonas gingivalis W83 mobilization protein PG0868 SWALL:AAQ66015 (EMBL:AE017175) (307 aa) fasta scores: E(): 8.6e-38, 42.15% id in 306 aa; mobilization protein 3872808 bmgA 3289245 bmgA Bacteroides fragilis NCTC 9343 mobilization protein YP_212897.1 3871894 D 272559 CDS YP_212898.1 60682754 3286674 3872813..3873538 1 NC_003228.3 Only similar to Bacteroides fragilis strain LV25 hypothetical protein SWALL:Q8RM72 (EMBL:AY053505) (239 aa) fasta scores: E(): 3e-43, 56.55% id in 244 aa; hypothetical protein 3873538 3286674 BF9343_3200 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212898.1 3872813 D 272559 CDS YP_212899.1 60682755 3286661 complement(3873588..3873941) 1 NC_003228.3 Similar to Bacteroides fragilis strain LV25 hypothetical protein SWALL:Q8RM73 (EMBL:AY053505) (119 aa) fasta scores: E(): 1.8e-29, 73.5% id in 117 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0107 SWALL:Q8ABK3 (EMBL:AE016926) (92 aa) fasta scores: E(): 1.7e-11, 45.65% id in 92 aa; hypothetical protein 3873941 3286661 BF9343_3201 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212899.1 3873588 R 272559 CDS YP_212900.1 60682756 3286662 complement(3874045..3874464) 1 NC_003228.3 hypothetical protein 3874464 3286662 BF9343_3202 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212900.1 3874045 R 272559 CDS YP_212901.1 60682757 3286673 complement(3874717..3875718) 1 NC_003228.3 Similar to Gloeobacter violaceus Gll0838 protein GLL0838 SWALL:BAC88779 (EMBL:AP006570) (326 aa) fasta scores: E(): 3.1e-59, 50.61% id in 326 aa, and to Rhizobium loti oxidoreductase, aldo/keto reductase family MLR5051 SWALL:Q98CQ3 (EMBL:AP003005) (332 aa) fasta scores: E(): 1.4e-57, 52.09% id in 334 aa; hypothetical protein 3875718 3286673 BF9343_3203 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212901.1 3874717 R 272559 CDS YP_212902.1 60682758 3286670 complement(3875799..3876704) 1 NC_003228.3 Similar to Pseudomonas aeruginosa probable transcriptional regulator PA4120 SWALL:Q9HWR1 (EMBL:AE004828) (303 aa) fasta scores: E(): 5e-09, 21.6% id in 287 aa, and to Photorhabdus luminescens subsp. laumondii TTO1 regulator of the 4hpa-hydroxylase operon HpaA or PLU0980 SWALL:CAE13275 (EMBL:BX571862) (296 aa) fasta scores: E(): 6.9e-08, 22.68% id in 291 aa; putative AraC-family regulatory protein 3876704 3286670 BF9343_3204 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212902.1 3875799 R 272559 CDS YP_212903.1 60682759 3286671 complement(3876756..3877103) 1 NC_003228.3 hypothetical protein 3877103 3286671 BF9343_3205 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212903.1 3876756 R 272559 CDS YP_212904.1 60682760 3286672 complement(3877204..3877827) 1 NC_003228.3 Low similarity to Anabaena sp. hypothetical protein ALR4010 SWALL:Q8YQ26 (EMBL:AP003595) (196 aa) fasta scores: E(): 6.9e-15, 35.48% id in 155 aa, and to Clostridium acetobutylicum predicted cAMP-binding domain, regulatory protein, diverged CAC3336 SWALL:Q97DY4 (EMBL:AE007830) (199 aa) fasta scores: E(): 2e-13, 32.51% id in 203 aa; hypothetical protein 3877827 3286672 BF9343_3206 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212904.1 3877204 R 272559 CDS YP_212905.1 60682761 3286689 3878113..3878460 1 NC_003228.3 hypothetical protein 3878460 3286689 BF9343_3207 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212905.1 3878113 D 272559 CDS YP_212906.1 60682762 3286668 3878542..3879270 1 NC_003228.3 hypothetical protein 3879270 3286668 BF9343_3208 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212906.1 3878542 D 272559 CDS YP_212907.1 60682763 3286669 3879431..3880810 1 NC_003228.3 Similar to Methanosarcina acetivorans hypothetical protein MA2121 SWALL:Q8TP06 (EMBL:AE010899) (458 aa) fasta scores: E(): 1.2e-53, 36.64% id in 453 aa, and to Bacteroides thetaiotaomicron ATP-dependent DNA helicase RecG BT3327 SWALL:Q8A2H8 (EMBL:AE016940) (485 aa) fasta scores: E(): 1.8e-29, 27.64% id in 463 aa; hypothetical protein 3880810 3286669 BF9343_3209 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212907.1 3879431 D 272559 CDS YP_212908.1 60682764 3286677 3880815..3883817 1 NC_003228.3 hypothetical protein 3883817 3286677 BF9343_3210 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212908.1 3880815 D 272559 CDS YP_212909.1 60682765 3286678 complement(3884081..3884719) 1 NC_003228.3 Similar to Lactobacillus plantarum phosphoglycolate phosphatase Gph2 or LP_1932 SWALL:Q88VV1 (EMBL:AL935257) (222 aa) fasta scores: E(): 5.6e-23, 36.19% id in 210 aa, and to Gloeobacter violaceus Gll0254 protein SWALL:BAC88195 (EMBL:AP006568) (222 aa) fasta scores: E(): 9.2e-06, 27.56% id in 185 aa; hypothetical protein 3884719 3286678 BF9343_3211 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212909.1 3884081 R 272559 CDS YP_212910.1 60682766 3286679 complement(3884697..3885320) 1 NC_003228.3 Similar to Lactobacillus plantarum galactoside O-acetyltransferase ThgA2 or LP_1933 SWALL:Q88VV0 (EMBL:AL935257) (202 aa) fasta scores: E(): 4.9e-50, 65.82% id in 199 aa, and to Bacillus subtilis probable maltose O-acetyltransferase Maa or BSU40850 SWALL:MAA_BACSU (SWALL:P37515) (184 aa) fasta scores: E(): 1.6e-14, 43.59% id in 195 aa; putative acetyltransferase 3885320 3286679 BF9343_3212 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_212910.1 3884697 R 272559 CDS YP_212911.1 60682767 3286695 complement(3885341..3885850) 1 NC_003228.3 Similar to Clostridium acetobutylicum nitroreductase family protein CAC1484 SWALL:Q97J02 (EMBL:AE007659) (172 aa) fasta scores: E(): 2.7e-23, 41.27% id in 172 aa, and to Porphyromonas gingivalis W83 nitroreductase family protein PG0310 SWALL:AAQ65525 (EMBL:AE017173) (179 aa) fasta scores: E(): 2.6e-22, 40.36% id in 166 aa; putative nitroreductase family protein 3885850 3286695 BF9343_3213 Bacteroides fragilis NCTC 9343 putative nitroreductase family protein YP_212911.1 3885341 R 272559 CDS YP_212912.1 60682768 3286675 3885963..3886802 1 NC_003228.3 Similar to Clostridium acetobutylicum AraC-type DNA-binding domain-containing protein CAC1451 SWALL:Q97J35 (EMBL:AE007656) (295 aa) fasta scores: E(): 3e-11, 25.38% id in 260 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT3122 SWALL:Q8A333 (EMBL:AE016939) (289 aa) fasta scores: E(): 3.3e-10, 25.09% id in 279 aa; putative AraC-family regulatory protein 3886802 3286675 BF9343_3214 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212912.1 3885963 D 272559 CDS YP_212913.1 60682769 3286676 complement(3886836..3890894) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BTt3302 SWALL:Q8A2K3 (EMBL:AE016940) (1366 aa) fasta scores: E(): 0, 57.63% id in 1343 aa, and to Shewanella oneidensis sensory box protein SO0341 SWALL:Q8EJW5 (EMBL:AE015481) (1515 aa) fasta scores: E(): 1.8e-35, 23.82% id in 848 aa; putative two-component system sensor kinase/response regulator fusion protein 3890894 3286676 BF9343_3215 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_212913.1 3886836 R 272559 CDS YP_212914.1 60682770 3286692 complement(3891110..3893059) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative alpha-glucosidase BT3294 SWALL:Q8A2L1 (EMBL:AE016939) (650 aa) fasta scores: E(): 2e-205, 72.76% id in 650 aa, and to Caulobacter crescentus alpha-glucosidase, putative CC0796 SWALL:Q9AA15 (EMBL:AE005755) (670 aa) fasta scores: E(): 4.1e-60, 30.66% id in 649 aa; hypothetical protein 3893059 3286692 BF9343_3216 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212914.1 3891110 R 272559 CDS YP_212915.1 60682771 3286693 3893279..3895243 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron sialic acid-specific 9-O-acetylesterase BT4091 SWALL:Q8A0D0 (EMBL:AE016943) (662 aa) fasta scores: E(): 1.8e-149, 55.62% id in 658 aa, and to Xanthomonas axonopodis sialic acid-specific 9-O-acetylesterase XAC4228 SWALL:Q8PEW2 (EMBL:AE012075) (654 aa) fasta scores: E(): 6.2e-73, 35.11% id in 655 aa; hypothetical protein 3895243 3286693 BF9343_3217 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212915.1 3893279 D 272559 CDS YP_212916.1 60682772 3286694 complement(3895357..3896949) 1 NC_003228.3 hypothetical protein 3896949 3286694 BF9343_3218 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212916.1 3895357 R 272559 CDS YP_212917.1 60682773 3286535 complement(3896955..3897941) 1 NC_003228.3 putative lipoprotein 3897941 3286535 BF9343_3219 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212917.1 3896955 R 272559 CDS YP_212918.1 60682774 3286690 complement(3898034..3899899) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1630 SWALL:Q8A795 (EMBL:AE016932) (591 aa) fasta scores: E(): 9.2e-34, 33.17% id in 645 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0141 SWALL:Q8ABG9 (EMBL:AE016926) (579 aa) fasta scores: E(): 3.1e-25, 29.33% id in 651 aa; hypothetical protein 3899899 3286690 BF9343_3220 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212918.1 3898034 R 272559 CDS YP_212919.1 60682775 3286691 complement(3899920..3903075) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database matches such as putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:Q8A3Z9 (EMBL:AE016937) (1083 aa) fasta scores: E(): 6.9e-132, 39.98% id in 1083 aa, and putative outer membrane protein, probably involved in nutrient binding BT4357 SWALL:Q89ZM0 (EMBL:AE016945) (1178 aa) fasta scores: E(): 3.2e-115, 37.92% id in 1081 aa; hypothetical protein 3903075 3286691 BF9343_3221 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212919.1 3899920 R 272559 CDS YP_212920.1 60682776 3286532 complement(3903206..3904405) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative hydrolase BT3782 SWALL:Q8A184 (EMBL:AE016942) (387 aa) fasta scores: E(): 2e-61, 40.86% id in 394 aa, and to Bacillus circulans alpha-1,6-mannanase precursor AmaN6 SWALL:Q9Z4P9 (EMBL:AB024331) (589 aa) fasta scores: E(): 1.2e-11, 25.98% id in 304 aa; putative membrane attached hydrolase 3904405 3286532 BF9343_3222 Bacteroides fragilis NCTC 9343 putative membrane attached hydrolase YP_212920.1 3903206 R 272559 CDS YP_212921.1 60682777 3286533 3904991..3905533 1 NC_003228.3 Similar to Fusobacterium nucleatum ribosomal-protein-alanine acetyltransferase FN1294 SWALL:Q8RE34 (EMBL:AE010635) (183 aa) fasta scores: E(): 2.4e-18, 40.9% id in 154 aa, and to Bacillus licheniformis hypothetical P20 protein SWALL:YP20_BACLI (SWALL:P05332) (178 aa) fasta scores: E(): 1.1e-11, 33.52% id in 170 aa; putative acetyltransferase 3905533 3286533 BF9343_3223 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_212921.1 3904991 D 272559 CDS YP_212922.1 60682778 3286534 complement(3905541..3906827) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron bexa, putative cation effux pump BT1900 SWALL:Q8A6I4 (EMBL:AE016933) (440 aa) fasta scores: E(): 1.7e-112, 66.66% id in 429 aa, and to Haemophilus influenzae probable multidrug resistance protein NorM or HI1612 SWALL:NORM_HAEIN (SWALL:P45272) (464 aa) fasta scores: E(): 1.7e-12, 22.5% id in 440 aa; putative transport-related membrane protein 3906827 3286534 BF9343_3224 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_212922.1 3905541 R 272559 CDS YP_212923.1 60682779 3286541 3907136..3907462 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0323 SWALL:AAQ65537 (EMBL:AE017173) (109 aa) fasta scores: E(): 4.5e-22, 59.43% id in 106 aa, and to Methanosarcina mazei hypothetical protein MM1422 SWALL:Q8PX00 (EMBL:AE013376) (107 aa) fasta scores: E(): 3.3e-19, 51.48% id in 101 aa; hypothetical protein 3907462 3286541 BF9343_3225 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212923.1 3907136 D 272559 CDS YP_212924.1 60682780 3286696 3907571..3908233 1 NC_003228.3 Similar to Pseudomonas putida uracil-DNA glycosylase Ung or PP1413 SWALL:UNG_PSEPK (SWALL:Q88N05) (230 aa) fasta scores: E(): 3.4e-45, 52.72% id in 220 aa, and to Gadus morhua uracil-DNA glycosylase Ung2 SWALL:Q9I982 (EMBL:AJ275972) (301 aa) fasta scores: E(): 1.7e-44, 53.73% id in 214 aa; putative uracil-DNA glycosylase 3908233 3286696 BF9343_3226 Bacteroides fragilis NCTC 9343 putative uracil-DNA glycosylase YP_212924.1 3907571 D 272559 CDS YP_212925.1 60682781 3286697 3908319..3909176 1 NC_003228.3 Similar to Chromobacterium violaceum ATCC 12472 probable AraC-family transcriptional regulator CV4141 SWALL:AAQ61802 (EMBL:AE016924) (286 aa) fasta scores: E(): 2.3e-21, 30.42% id in 286 aa, and to Bordetella pertussis AraC-family transcriptional regulator BP0483 SWALL:CAE44812 (EMBL:BX640412) (281 aa) fasta scores: E(): 1.8e-20, 29.86% id in 288 aa; putative AraC-family regulatory protein 3909176 3286697 BF9343_3227 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212925.1 3908319 D 272559 CDS YP_212926.1 60682782 3286540 3909457..3911346 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0198 SWALL:Q8ABB2 (EMBL:AE016926) (634 aa) fasta scores: E(): 7.1e-86, 37.89% id in 628 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3630 SWALL:Q8A1M9 (EMBL:AE016941) (541 aa) fasta scores: E(): 2.2e-05, 31.14% id in 183 aa; putative lipoprotein 3911346 3286540 BF9343_3228 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212926.1 3909457 D 272559 CDS YP_212927.1 60682783 3286537 3911529..3912128 1 NC_003228.3 hypothetical protein 3912128 3286537 BF9343_3229 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212927.1 3911529 D 272559 CDS YP_212928.1 60682784 3286538 complement(3912374..3913102) 1 NC_003228.3 Similar to Shewanella oneidensis conserved hypothetical protein SO4302 SWALL:Q8E9I0 (EMBL:AE015862) (222 aa) fasta scores: E(): 5.9e-25, 35.77% id in 232 aa, and to Bacillus anthracis scda protein ScdA or BA2147 SWALL:Q81RA3 (EMBL:AE017030) (235 aa) fasta scores: E(): 8.2e-20, 31.14% id in 228 aa; hypothetical protein 3913102 3286538 BF9343_3230 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212928.1 3912374 R 272559 CDS YP_212929.1 60682785 3286539 complement(3913336..3913800) 1 NC_003228.3 Similar to Leptospira interrogans maoc family protein LA0899 SWALL:Q8F7P5 (EMBL:AE011274) (154 aa) fasta scores: E(): 1.4e-26, 50.32% id in 153 aa, and to Streptomyces avermitilis hypothetical protein SAV6603 SWALL:Q828Q9 (EMBL:AP005047) (153 aa) fasta scores: E(): 6.3e-19, 45.03% id in 151 aa; hypothetical protein 3913800 3286539 BF9343_3231 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212929.1 3913336 R 272559 CDS YP_212930.1 60682786 3286546 complement(3913864..3914259) 1 NC_003228.3 Similar to Bacillus subtilis hypothetical protein YuxK or BSU31500 SWALL:YUXK_BACSU (SWALL:P40761) (137 aa) fasta scores: E(): 1.7e-19, 43.22% id in 118 aa, and to Oceanobacillus iheyensis hypothetical conserved protein OB2278 SWALL:Q8EP41 (EMBL:AP004600) (136 aa) fasta scores: E(): 1.4e-17, 42.5% id in 120 aa; hypothetical protein 3914259 3286546 BF9343_3232 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212930.1 3913864 R 272559 CDS YP_212931.1 60682787 3286547 complement(3914269..3915129) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1908 SWALL:Q8A6H6 (EMBL:AE016933) (289 aa) fasta scores: E(): 3.9e-55, 55.83% id in 283 aa; hypothetical protein 3915129 3286547 BF9343_3233 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212931.1 3914269 R 272559 CDS YP_212932.1 60682788 3289207 3916058..3916837 1 NC_003228.3 Identical to the previously sequenced Bacteroides fragilis 7-alpha-hydroxysteroid dehydrogenase HdhA SWALL:Q9S3U5 (EMBL:AF173833) (259 aa) fasta scores: E(): 7.4e-93, 100% id in 259 aa, and similar to Escherichia coli, and Escherichia coli O157:H7 7-alpha-hydroxysteroid dehydrogenase HdhA or HsdH or B1619 or Z2624 or ECS2327 SWALL:HDHA_ECOLI (SWALL:P25529) (255 aa) fasta scores: E(): 2.2e-22, 34.14% id in 246 aa; putative 7-alpha-hydroxysteroid dehydrogenase (bile acid catabolism) 3916837 hdhA 3289207 hdhA Bacteroides fragilis NCTC 9343 putative 7-alpha-hydroxysteroid dehydrogenase (bile acid catabolism) YP_212932.1 3916058 D 272559 CDS YP_212933.1 60682789 3286536 complement(3917241..3920246) 1 NC_003228.3 putative lipoprotein 3920246 3286536 BF9343_3235 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212933.1 3917241 R 272559 CDS YP_212934.1 60682790 3286543 complement(3920276..3920839) 1 NC_003228.3 Only similar to Porphyromonas gingivalis W83 hypothetical protein PG2130 SWALL:AAQ67085 (EMBL:AE017179) (193 aa) fasta scores: E(): 4e-23, 39.69% id in 194 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4234 SWALL:Q89ZY7 (EMBL:AE016944) (189 aa) fasta scores: E(): 1.4e-20, 36.7% id in 188 aa; hypothetical protein 3920839 3286543 BF9343_3236 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212934.1 3920276 R 272559 CDS YP_212935.1 60682791 3286544 complement(3920836..3921198) 1 NC_003228.3 hypothetical protein 3921198 3286544 BF9343_3237 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212935.1 3920836 R 272559 CDS YP_212936.1 60682792 3286545 complement(3921217..3921861) 1 NC_003228.3 hypothetical protein 3921861 3286545 BF9343_3238 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212936.1 3921217 R 272559 CDS YP_212937.1 60682793 3286552 complement(3921865..3923634) 1 NC_003228.3 putative lipoprotein 3923634 3286552 BF9343_3239 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212937.1 3921865 R 272559 CDS YP_212938.1 60682794 3286553 complement(3923671..3925365) 1 NC_003228.3 putative lipoprotein 3925365 3286553 BF9343_3240 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212938.1 3923671 R 272559 CDS YP_212939.1 60682795 3286542 complement(3925392..3927140) 1 NC_003228.3 putative lipoprotein 3927140 3286542 BF9343_3241 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212939.1 3925392 R 272559 CDS YP_212940.1 60682796 3286549 complement(3927204..3928106) 1 NC_003228.3 Only similar to Porphyromonas gingivalis W83 lipoprotein, putative PG2133 SWALL:AAQ67088 (EMBL:AE017179) (303 aa) fasta scores: E(): 2.6e-12, 26.55% id in 305 aa; putative lipoprotein 3928106 3286549 BF9343_3242 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212940.1 3927204 R 272559 CDS YP_212941.1 60682797 3286550 complement(3928233..3929501) 1 NC_003228.3 hypothetical protein 3929501 3286550 BF9343_3243 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212941.1 3928233 R 272559 CDS YP_212942.1 60682798 3286551 3929799..3930677 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron AraC family transcriptional regulator BT2889 SWALL:Q8A3R5 (EMBL:AE016937) (294 aa) fasta scores: E(): 1.2e-61, 49.3% id in 288 aa, and to Clostridium perfringens probable transcriptional regulator CPE0448 SWALL:Q8XN90 (EMBL:AP003186) (285 aa) fasta scores: E(): 2.9e-05, 23.39% id in 265 aa; putative AraC-family regulatory protein 3930677 3286551 BF9343_3244 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212942.1 3929799 D 272559 CDS YP_212943.1 60682799 3286558 complement(3930840..3932051) 1 NC_003228.3 Only significant similarities to Bacteroides thetaiotaomicron database entires such as putative integrase BT2322 SWALL:Q8A5B7 (EMBL:AE016935) (332 aa) fasta scores: E(): 5.5e-31, 34.32% id in 338 aa, and integrase BT2488 SWALL:Q8A4V9 (EMBL:AE016936) (315 aa) fasta scores: E(): 8.4e-25, 33.57% id in 280 aa; putative integrase 3932051 3286558 BF9343_3245 Bacteroides fragilis NCTC 9343 putative integrase YP_212943.1 3930840 R 272559 CDS YP_212944.1 60682800 3286559 complement(3932484..3933350) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries such as AraC family transcriptional regulator BT2889 SWALL:Q8A3R5 (EMBL:AE016937) (294 aa) fasta scores: E(): 1e-20, 25.36% id in 276 aa, and transcriptional regulator BT3058 SWALL:Q8A396 (EMBL:AE016938) (280 aa) fasta scores: E(): 5.9e-18, 26.07% id in 257 aa; putative AraC-family regulatory protein 3933350 3286559 BF9343_3246 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212944.1 3932484 R 272559 CDS YP_212945.1 60682801 3287981 3933580..3934746 1 NC_003228.3 Similar to Escherichia coli nicotinate phosphoribosyltransferase PncB or B0931 SWALL:PNCB_ECOLI (SWALL:P18133) (399 aa) fasta scores: E(): 1.4e-36, 34.64% id in 381 aa, and to Bacteroides thetaiotaomicron nicotinate phosphoribosyltransferase BT1913 SWALL:Q8A6H1 (EMBL:AE016933) (389 aa) fasta scores: E(): 2.3e-129, 81.13% id in 387 aa; putative nicotinate phosphoribosyltransferase 3934746 pncB 3287981 pncB Bacteroides fragilis NCTC 9343 putative nicotinate phosphoribosyltransferase YP_212945.1 3933580 D 272559 CDS YP_212946.1 60682802 3286548 complement(3934770..3935981) 1 NC_003228.3 Full length similarity to Bacteroides thetaiotaomicron thiol:disulfide interchange protein BT2745 SWALL:Q8A458 (EMBL:AE016937) (404 aa) fasta scores: E(): 1.8e-89, 53.82% id in 405 aa, and only C-terminal similarity to Bradyrhizobium japonicum thiol:disulfide interchange protein TlpA or BLL1380 SWALL:TLPA_BRAJA (SWALL:P43221) (221 aa) fasta scores: E(): 0.00015, 36.95% id in 92 aa; hypothetical protein 3935981 3286548 BF9343_3248 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212946.1 3934770 R 272559 CDS YP_212947.1 60682803 3286555 complement(3936730..3938994) 1 NC_003228.3 Similar to Pseudomonas putida sodium/proton antiporter, putative PP5355 SWALL:Q88C28 (EMBL:AE016794) (586 aa) fasta scores: E(): 4.4e-70, 37.56% id in 591 aa, and to Anabaena sp. hypothetical protein ALR2046 SWALL:Q8YVD2 (EMBL:AP003588) (773 aa) fasta scores: E(): 1e-36, 26.12% id in 781 aa, and to Escherichia coli hypothetical protein YbaL or B0478 SWALL:YBAL_ECOLI (SWALL:P39830) (558 aa) fasta scores: E(): 1.3e-32, 32.82% id in 393 aa; putative K+ transport related membrane protein 3938994 3286555 BF9343_3249 Bacteroides fragilis NCTC 9343 putative K+ transport related membrane protein YP_212947.1 3936730 R 272559 CDS YP_212948.1 60682804 3289082 3939536..3941050 1 NC_003228.3 Similar to Anabaena sp. biotin carboxylase AccC or ALR0939 SWALL:ACCC_ANASP (SWALL:Q06862) (447 aa) fasta scores: E(): 1.2e-91, 55.25% id in 438 aa, and to Bacillus subtilis biotin carboxylase AccC or BSU24340 SWALL:ACCC_BACSU (SWALL:P49787) (448 aa) fasta scores: E(): 8.8e-89, 53.16% id in 442 aa. Note: Also similar to BF1624 (accC1) (504 aa) fasta scores: E(): 3.6e-98, 53.307% identity in 499 aa overla; putative biotin carboxylase 2 3941050 accC2 3289082 accC2 Bacteroides fragilis NCTC 9343 putative biotin carboxylase 2 YP_212948.1 3939536 D 272559 CDS YP_212949.1 60682805 3286556 3941055..3941555 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1916 SWALL:Q8A6G8 (EMBL:AE016933) (169 aa) fasta scores: E(): 1.9e-53, 91.56% id in 166 aa, and to Pyrococcus abyssi methylmalonyl-CoA decarboxylase gamma chain PYRAB08850 or PAB1771 SWALL:Q9V0A6 (EMBL:AJ248285) (145 aa) fasta scores: E(): 1.1e-06, 31.29% id in 147 aa; putative bioin-requiring protein 3941555 3286556 BF9343_3251 Bacteroides fragilis NCTC 9343 putative bioin-requiring protein YP_212949.1 3941055 D 272559 CDS YP_212950.1 60682806 3286557 3941575..3943110 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis acetyl-CoA carboxylase alpha subunit AccA2 or TTE2385 SWALL:Q8R7L8 (EMBL:AE013180) (516 aa) fasta scores: E(): 2.1e-121, 59.53% id in 514 aa, and to Bacteroides thetaiotaomicron propionyl-CoA carboxylase beta chain BT1450 SWALL:Q8A7S4 (EMBL:AE016931) (514 aa) fasta scores: E(): 1.6e-120, 61.38% id in 505 aa; putative carboxyl transferase 3943110 3286557 BF9343_3252 Bacteroides fragilis NCTC 9343 putative carboxyl transferase YP_212950.1 3941575 D 272559 CDS YP_212951.1 60682807 3286567 complement(3943215..3943886) 1 NC_003228.3 hypothetical protein 3943886 3286567 BF9343_3253 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212951.1 3943215 R 272559 CDS YP_212952.1 60682808 3286568 3944283..3945896 1 NC_003228.3 Similar to Anabaena sp. penicillin-binding protein ALR0153 SWALL:Q8Z0E5 (EMBL:AP003581) (537 aa) fasta scores: E(): 3e-11, 23.4% id in 453 aa, and to Rhodopirellula baltica probable beta-lactamase RB8687 SWALL:Q7UMP8 (EMBL:BX294148) (802 aa) fasta scores: E(): 1.5e-10, 23.09% id in 407 aa; putative exported beta-lactamase protein 3945896 3286568 BF9343_3254 Bacteroides fragilis NCTC 9343 putative exported beta-lactamase protein YP_212952.1 3944283 D 272559 CDS YP_212953.1 60682809 3289165 complement(3946292..3947785) 1 NC_003228.3 Similar to Tritrichomonas foetus inosine-5'-monophosphate dehydrogenase ImpDH SWALL:IMDH_TRIFO (SWALL:P50097) (503 aa) fasta scores: E(): 1.7e-128, 66.73% id in 496 aa, and to Aquifex aeolicus inosine-5'-monophosphate dehydrogenase GuaB or AQ_2023 SWALL:IMDH_AQUAE (SWALL:O67820) (490 aa) fasta scores: E(): 3.8e-46, 37.27% id in 491 aa; putative inosine-5'-monophosphate dehydrogenase (GMP biosynthesis) 3947785 impDH 3289165 impDH Bacteroides fragilis NCTC 9343 putative inosine-5'-monophosphate dehydrogenase (GMP biosynthesis) YP_212953.1 3946292 R 272559 CDS YP_212954.1 60682810 3286554 complement(3948017..3948304) 1 NC_003228.3 Similar to Yersinia pestis hypothetical protein YPO1733 SWALL:Q8ZFH6 (EMBL:AJ414150) (94 aa) fasta scores: E(): 2.4e-15, 52.74% id in 91 aa, and to Streptococcus mutans conserved hypothetical protein SMU.2121c SWALL:Q8DRU3 (EMBL:AE015033) (95 aa) fasta scores: E(): 2.5e-15, 51.57% id in 95 aa; hypothetical protein 3948304 3286554 BF9343_3256 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212954.1 3948017 R 272559 CDS YP_212955.1 60682811 3286561 3948482..3948715 1 NC_003228.3 hypothetical protein 3948715 3286561 BF9343_3257 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212955.1 3948482 D 272559 CDS YP_212956.1 60682812 3286562 complement(3948742..3949587) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT1968 SWALL:Q8A6B6 (EMBL:AE016934) (282 aa) fasta scores: E(): 5.2e-73, 63.53% id in 277 aa, and to Bacteroides thetaiotaomicron AraC-type transcription regulator BT1235 SWALL:Q8A8D2 (EMBL:AE016931) (300 aa) fasta scores: E(): 1.9e-23, 31.93% id in 263 aa; putative AraC-family regulatory protein 3949587 3286562 BF9343_3258 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_212956.1 3948742 R 272559 CDS YP_212957.1 60682813 3286566 3949738..3950853 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron AcrA/AcrE family multidrug resistance protein BT3339 SWALL:Q8A2G6 (EMBL:AE016940) (391 aa) fasta scores: E(): 1e-57, 48.19% id in 361 aa, and to Campylobacter jejuni CmeA SWALL:Q8RTE5 (EMBL:AF466820) (367 aa) fasta scores: E(): 3e-25, 30.44% id in 358 aa; putative transport-related, exported protein 3950853 3286566 BF9343_3259 Bacteroides fragilis NCTC 9343 putative transport-related, exported protein YP_212957.1 3949738 D 272559 CDS YP_212958.1 60682814 3285928 3950936..3954142 1 NC_003228.3 Similar to Chlorobium tepidum multidrug resistance protein, AcrB/AcrD family CT1287 SWALL:Q8KCX0 (EMBL:AE012888) (1063 aa) fasta scores: E(): 1.5e-185, 47.78% id in 1036 aa, and to Pseudomonas aeruginosa multidrug resistance protein MexB or PA0426 SWALL:MEXB_PSEAE (SWALL:P52002) (1046 aa) fasta scores: E(): 1.6e-130, 36.75% id in 1034 aa; putative multidrug resistance/siderophore transport related, membrane protein 3954142 3285928 BF9343_3260 Bacteroides fragilis NCTC 9343 putative multidrug resistance/siderophore transport related, membrane protein YP_212958.1 3950936 D 272559 CDS YP_212959.1 60682815 3286452 3954153..3955580 1 NC_003228.3 Similar to Escherichia coli cation efflux system protein precursor CusC or IbeB or B0572 SWALL:CUSC_ECOLI (SWALL:P77211) (457 aa) fasta scores: E(): 5.5e-33, 30.04% id in 466 aa, and to Salmonella typhimurium probable outer membrane lipoprotein SilC precursor SWALL:SILC_SALTY (SWALL:Q9ZHD2) (461 aa) fasta scores: E(): 9.9e-28, 27.82% id in 478 aa; putative transport related, lipoprotein 3955580 3286452 BF9343_3261 Bacteroides fragilis NCTC 9343 putative transport related, lipoprotein YP_212959.1 3954153 D 272559 CDS YP_212960.1 60682816 3286560 complement(3955729..3957009) 1 NC_003228.3 Similar to Pasteurella multocida MetC MetC_1 or PM0738 SWALL:Q9CMS4 (EMBL:AE006111) (422 aa) fasta scores: E(): 3.8e-95, 58.85% id in 418 aa, and to Bacillus anthracis O-acetylhomoserine/O-acetylserine sulfhydrylase BA5656 SWALL:Q81JP6 (EMBL:AE017041) (432 aa) fasta scores: E(): 1.1e-92, 56.6% id in 424 aa; putative cysteine biosynthesis related protein 3957009 3286560 BF9343_3262 Bacteroides fragilis NCTC 9343 putative cysteine biosynthesis related protein YP_212960.1 3955729 R 272559 CDS YP_212961.1 60682817 3285862 3957179..3958219 1 NC_003228.3 N-terminal similar to Bacteroides thetaiotaomicron putative N-acetylmuramoyl-L-alanine amidase BT1922 SWALL:Q8A6G2 (EMBL:AE016934) (256 aa) fasta scores: E(): 1.3e-71, 72.97% id in 259 aa, and C-terminal similar to Bacteroides thetaiotaomicron hypothetical protein BT1921 SWALL:Q8A6G3 (EMBL:AE016934) (79 aa) fasta scores: E(): 2.3e-23, 92.1% id in 76 aa, and partly similar to Bacillus subtilis germination-specific N-acetylmuramoyl-L-alanine amidase CwlD or BSU01530 SWALL:CWLD_BACSU (SWALL:P50864) (237 aa) fasta scores: E(): 0.64, 23.76% id in 223 aa; putative cell wall biosynthesis related protein 3958219 3285862 BF9343_3263 Bacteroides fragilis NCTC 9343 putative cell wall biosynthesis related protein YP_212961.1 3957179 D 272559 CDS YP_212962.1 60682818 3285287 3958347..3959303 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1409 SWALL:Q8A7W5 (EMBL:AE016931) (308 aa) fasta scores: E(): 2.1e-53, 46.23% id in 305 aa, and to Micromonospora echinospora Type I PKS biosyntehsis related CalE2 SWALL:Q8KNI2 (EMBL:AF497482) (304 aa) fasta scores: E(): 5.6e-06, 24.35% id in 308 aa; hypothetical protein 3959303 3285287 BF9343_3264 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212962.1 3958347 D 272559 CDS YP_212963.1 60682819 3285935 complement(3959351..3960358) 1 NC_003228.3 Similar to Clostridium perfringens hypothetical protein CPE0962 SWALL:Q8XLS9 (EMBL:AP003188) (319 aa) fasta scores: E(): 1.8e-22, 38.18% id in 309 aa, and to Lactobacillus plantarum integral membrane protein LP_3175 SWALL:Q88T30 (EMBL:AL935261) (304 aa) fasta scores: E(): 9.6e-09, 23.41% id in 316 aa; hypothetical protein 3960358 3285935 BF9343_3265 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212963.1 3959351 R 272559 CDS YP_212964.1 60682820 3286390 3960503..3960766 1 NC_003228.3 hypothetical protein 3960766 3286390 BF9343_3266 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212964.1 3960503 D 272559 CDS YP_212965.1 60682821 3286424 3960868..3961143 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT4381 SWALL:Q89ZJ6 (EMBL:AE016945) (95 aa) fasta scores: E(): 1e-05, 35.86% id in 92 aa; hypothetical protein 3961143 3286424 BF9343_3267 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212965.1 3960868 D 272559 CDS YP_212966.1 60682822 3289392 3961438..3961872 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3989 SWALL:Q8A0N2 (EMBL:AE016943) (144 aa) fasta scores: E(): 3.8e-19, 36.11% id in 144 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2079 SWALL:AAQ67040 (EMBL:AE017179) (158 aa) fasta scores: E(): 2e-12, 35% id in 140 aa; hypothetical protein 3961872 3289392 BF9343_3268 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212966.1 3961438 D 272559 CDS YP_212967.1 60682823 3286427 3962653..3964965 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC-transporter permease protein BT0862 SWALL:Q8A9F3 (EMBL:AE016929) (777 aa) fasta scores: E(): 6.8e-23, 25.3% id in 810 aa, and to Porphyromonas gingivalis W83 ABC transporter, permease protein, putative PG0682 SWALL:AAQ65857 (EMBL:AE017174) (783 aa) fasta scores: E(): 8.3e-09, 19.92% id in 813 aa; putative permease/membrane protein 3964965 3286427 BF9343_3269 Bacteroides fragilis NCTC 9343 putative permease/membrane protein YP_212967.1 3962653 D 272559 CDS YP_212968.1 60682824 3287836 3965560..3965889 1 NC_003228.3 Similar to Helicobacter hepaticus conserved hypothetical membrane protein HH1452 SWALL:Q7VG72 (EMBL:AE017148) (104 aa) fasta scores: E(): 8.9e-13, 42.05% id in 107 aa, and to Proteus vulgaris SugE protein homolog SWALL:SUGE_PROVU (SWALL:P20928) (104 aa) fasta scores: E(): 1.4e-11, 44.86% id in 107 aa; putative chaperone/membrane protein 3965889 3287836 BF9343_3271 Bacteroides fragilis NCTC 9343 putative chaperone/membrane protein YP_212968.1 3965560 D 272559 CDS YP_212969.1 60682825 3286448 complement(3966009..3966695) 1 NC_003228.3 Similar to Rhizobium loti hypothetical protein MLR6523 SWALL:Q988Z7 (EMBL:AP003009) (238 aa) fasta scores: E(): 1.2e-31, 44.05% id in 227 aa, and to Xanthomonas campestris hydrolase, haloacid delahogenase-like family XCC3796 SWALL:Q8P4B4 (EMBL:AE012500) (250 aa) fasta scores: E(): 1.1e-29, 42.23% id in 206 aa; putative hydrolase 3966695 3286448 BF9343_3272 Bacteroides fragilis NCTC 9343 putative hydrolase YP_212969.1 3966009 R 272559 CDS YP_212970.1 60682826 3286421 3966884..3967756 1 NC_003228.3 putative lipoprotein 3967756 3286421 BF9343_3273 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_212970.1 3966884 D 272559 CDS YP_212971.1 60682827 3286443 3967779..3968663 1 NC_003228.3 hypothetical protein 3968663 3286443 BF9343_3274 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212971.1 3967779 D 272559 CDS YP_212972.1 60682828 3286411 complement(3968664..3969452) 1 NC_003228.3 Similar to the C-terminal region of Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1833 SWALL:Q8A6P4 (EMBL:AE016933) (882 aa) fasta scores: E(): 1e-05, 23% id in 226 aa, and of Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT4057 SWALL:Q8A0G4 (EMBL:AE016943) (921 aa) fasta scores: E(): 1.2e-05, 22.72% id in 242 aa; putative two-component system, sensor kinase 3969452 3286411 BF9343_3275 Bacteroides fragilis NCTC 9343 putative two-component system, sensor kinase YP_212972.1 3968664 R 272559 CDS YP_212973.1 60682829 3286392 complement(3969799..3971445) 1 NC_003228.3 Similar to Vibrio parahaemolyticus putative cation efflux system transmembrane protein VPA0481 SWALL:Q87IX5 (EMBL:AP005085) (571 aa) fasta scores: E(): 2.7e-34, 31.99% id in 422 aa, and to Salmonella typhimurium putative membrane fusion protein SilB precursor SWALL:SILB_SALTY (SWALL:Q9ZHD0) (430 aa) fasta scores: E(): 6.4e-17, 25.89% id in 390 aa; putative metal transport-related, exported protein 3971445 3286392 BF9343_3276 Bacteroides fragilis NCTC 9343 putative metal transport-related, exported protein YP_212973.1 3969799 R 272559 CDS YP_212974.1 60682830 3286362 complement(3971477..3972982) 1 NC_003228.3 hypothetical protein 3972982 3286362 BF9343_3277 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212974.1 3971477 R 272559 CDS YP_212975.1 60682831 3286399 complement(3973162..3976920) 1 NC_003228.3 Similar to Legionella pneumophila chemiosmotic efflux system B protein A CebA SWALL:Q8RNP2 (EMBL:AF480912) (1047 aa) fasta scores: E(): 1.9e-46, 35.28% id in 1244 aa, and to Escherichia coli cation efflux system protein CusA or B0575 SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 3.4e-40, 32.77% id in 1251 aa; putative copper/silver resistance-related transport membrane protein 3976920 3286399 BF9343_3278 Bacteroides fragilis NCTC 9343 putative copper/silver resistance-related transport membrane protein YP_212975.1 3973162 R 272559 CDS YP_212976.1 60682832 3286378 complement(3977112..3977504) 1 NC_003228.3 hypothetical protein 3977504 3286378 BF9343_3279 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212976.1 3977112 R 272559 CDS YP_212977.1 60682833 3286401 3977797..3978612 1 NC_003228.3 Similar to the C-terminal region of Chromobacterium violaceum ATCC 12472 peptidoglycan N-acetylmuramoylhydrolase MltD or CV1253 SWALL:AAQ58928 (EMBL:AE016914) (620 aa) fasta scores: E(): 5.1e-19, 32.53% id in 249 aa, and of Escherichia coli, and Escherichia coli O6 membrane-bound lytic murein transglycosylase D precursor MltD or DniR or B0211 or C0248 SWALL:MLTD_ECOLI (SWALL:P23931) (452 aa) fasta scores: E(): 3.2e-18, 29.45% id in 258 aa; putative peptidoglycan biosynthesis-related protein 3978612 3286401 BF9343_3280 Bacteroides fragilis NCTC 9343 putative peptidoglycan biosynthesis-related protein YP_212977.1 3977797 D 272559 CDS YP_212978.1 60682834 3286336 3978687..3979556 1 NC_003228.3 Similar to Vibrio vulnificus probable potassium channel VV13113 SWALL:Q8D873 (EMBL:AE016807) (286 aa) fasta scores: E(): 2.3e-50, 48.6% id in 286 aa, and to Methanosarcina mazei potassium channel protein MM3189 SWALL:Q8PS93 (EMBL:AE013577) (279 aa) fasta scores: E(): 8.1e-46, 46.59% id in 264 aa; putative ion transport related, membrane protein 3979556 3286336 BF9343_3281 Bacteroides fragilis NCTC 9343 putative ion transport related, membrane protein YP_212978.1 3978687 D 272559 CDS YP_212979.1 60682835 3286340 complement(3979546..3985419) 1 NC_003228.3 Similar to Pseudomonas syringae hypothetical protein SWALL:Q93NJ8 (EMBL:AF372703) (1945 aa) fasta scores: E(): 1.5e-139, 33.33% id in 1980 aa, and to Xanthomonas campestris DNA helicase related protein XCC2095 SWALL:Q8P8Y4 (EMBL:AE012316) (2224 aa) fasta scores: E(): 1.2e-88, 31.55% id in 2187 aa; hypothetical protein 3985419 3286340 BF9343_3282 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212979.1 3979546 R 272559 CDS YP_212980.1 60682836 3286326 complement(3985538..3985909) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4485 SWALL:Q89Z92 (EMBL:AE016945) (121 aa) fasta scores: E(): 6.4e-30, 61.98% id in 121 aa, and to Clostridium perfringens hypothetical protein CPE0033 SWALL:Q8XPD0 (EMBL:AP003185) (121 aa) fasta scores: E(): 9.8e-17, 41.37% id in 116 aa; hypothetical protein 3985909 3286326 BF9343_3283 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212980.1 3985538 R 272559 CDS YP_212981.1 60682837 3286373 3986134..3986802 1 NC_003228.3 Similar to Listeria innocua hypothetical protein LIN2751 SWALL:Q927N7 (EMBL:AL596173) (220 aa) fasta scores: E(): 9.3e-46, 61.75% id in 217 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YhiD or B3508 or Z4920 or ECS4388 SWALL:YHID_ECOLI (SWALL:P26606) (215 aa) fasta scores: E(): 1.8e-22, 46.34% id in 164 aa; hypothetical protein 3986802 3286373 BF9343_3284 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212981.1 3986134 D 272559 CDS YP_212982.1 60682838 3286350 complement(3986805..3987578) 1 NC_003228.3 Similar to Fusobacterium nucleatum hypothetical protein FN0953 SWALL:Q8REY1 (EMBL:AE010602) (243 aa) fasta scores: E(): 8.6e-15, 32.93% id in 252 aa, and to Chlorobium tepidum hypothetical protein CT0182 SWALL:Q8KFY8 (EMBL:AE012797) (245 aa) fasta scores: E(): 3.6e-06, 31.39% id in 258 aa; hypothetical protein 3987578 3286350 BF9343_3285 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212982.1 3986805 R 272559 CDS YP_212983.1 60682839 3286319 complement(3987586..3988851) 1 NC_003228.3 Similar to Fusobacterium nucleatum hypothetical cytosolic protein FN0954 SWALL:Q8REY0 (EMBL:AE010603) (415 aa) fasta scores: E(): 1.1e-86, 52.38% id in 420 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 biotin synthase related domain containing protein FNV1167 SWALL:EAA24176 (EMBL:AABF01000049) (416 aa) fasta scores: E(): 8.4e-86, 52.61% id in 420 aa; hypothetical protein 3988851 3286319 BF9343_3286 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212983.1 3987586 R 272559 CDS YP_212984.1 60682840 3286221 complement(3988848..3989747) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron putative transcriptional regulator BT2509 SWALL:Q8A4T8 (EMBL:AE016936) (300 aa) fasta scores: E(): 2.1e-53, 45.66% id in 300 aa, and to Listeria innocua hypothetical protein LIN0464 SWALL:Q92EJ5 (EMBL:AL596165) (310 aa) fasta scores: E(): 4.6e-05, 25.82% id in 182 aa; hypothetical protein 3989747 3286221 BF9343_3287 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212984.1 3988848 R 272559 CDS YP_212985.1 60682841 3286276 3989919..3991004 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 peptide methionine sulfoxide reductase MsrA or PG2088 SWALL:AAQ67048 (EMBL:AE017179) (352 aa) fasta scores: E(): 8.9e-93, 64.62% id in 359 aa, and to Actinobacillus actinomycetemcomitans peptide methionine sulfoxide reductase MsrA/MsrB MsrAB SWALL:MSAB_ACTAC (SWALL:Q9AL99) (356 aa) fasta scores: E(): 4e-57, 56.49% id in 331 aa; putative peptide methionine sulfoxide reductase 3991004 3286276 BF9343_3288 Bacteroides fragilis NCTC 9343 putative peptide methionine sulfoxide reductase YP_212985.1 3989919 D 272559 CDS YP_212986.1 60682842 3286318 3991493..3992134 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ATP-dependent DNA helicase BT4477 SWALL:Q89ZA0 (EMBL:AE016945) (215 aa) fasta scores: E(): 1.5e-70, 85.44% id in 213 aa, and partially similar to Methanosarcina acetivorans ATP-dependent DNA helicase RecG or MA2369 SWALL:Q8TNC2 (EMBL:AE010926) (510 aa) fasta scores: E(): 6.7e-05, 33.33% id in 126 aa; hypothetical protein 3992134 3286318 BF9343_3290 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212986.1 3991493 D 272559 CDS YP_212987.1 60682843 3286334 3992170..3993549 1 NC_003228.3 Similar to Clostridium perfringens probable amino acid carrier protein CPE1964 SWALL:Q8XIZ9 (EMBL:AP003192) (466 aa) fasta scores: E(): 1.4e-104, 59.78% id in 455 aa, and to Bacillus subtilis amino acid carrier protein AlsT or BSU18120 SWALL:ALST_BACSU (SWALL:Q45068) (465 aa) fasta scores: E(): 2.6e-89, 53.26% id in 460 aa; putative amino acid transport related, membrane protein 3993549 3286334 BF9343_3291 Bacteroides fragilis NCTC 9343 putative amino acid transport related, membrane protein YP_212987.1 3992170 D 272559 CDS YP_212988.1 60682844 3286300 3993650..3994288 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT4475 SWALL:Q89ZA2 (EMBL:AE016945) (210 aa) fasta scores: E(): 2.9e-70, 82.54% id in 212 aa; hypothetical protein 3994288 3286300 BF9343_3292 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212988.1 3993650 D 272559 CDS YP_212989.1 60682845 3286310 3994422..3996521 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4474 SWALL:Q89ZA3 (EMBL:AE016945) (720 aa) fasta scores: E(): 1.2e-179, 79.27% id in 714 aa; hypothetical protein 3996521 3286310 BF9343_3293 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212989.1 3994422 D 272559 CDS YP_212990.1 60682846 3286307 complement(3996612..3997937) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 xanthine/uracil permease family protein PG2148 SWALL:AAQ67101 (EMBL:AE017179) (445 aa) fasta scores: E(): 2.3e-126, 76.09% id in 435 aa, and to Bacillus subtilis uric acid permease PucJ or BSU32430 SWALL:PUCJ_BACSU (SWALL:O32139) (449 aa) fasta scores: E(): 2.1e-43, 33.57% id in 423 aa, and to Bacillus subtilis xanthine permease PbuX or BSU22060 SWALL:PBUX_BACSU (SWALL:P42086) (438 aa) fasta scores: E(): 4.8e-43, 33.41% id in 428 aa; putative xanthine/uracyl permease, membrane protein 3997937 3286307 BF9343_3294 Bacteroides fragilis NCTC 9343 putative xanthine/uracyl permease, membrane protein YP_212990.1 3996612 R 272559 CDS YP_212991.1 60682847 3286264 complement(3997944..3998651) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT4472 SWALL:Q89ZA5 (EMBL:AE016945) (235 aa) fasta scores: E(): 9.1e-82, 82.55% id in 235 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0937 SWALL:AAQ66071 (EMBL:AE017175) (240 aa) fasta scores: E(): 4.8e-37, 56.03% id in 232 aa; hypothetical protein 3998651 3286264 BF9343_3295 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212991.1 3997944 R 272559 CDS YP_212992.1 60682848 3286175 3998758..3999348 1 NC_003228.3 Similar to Pasteurella multocida hypothetical protein PM0751 SWALL:Q9CMR1 (EMBL:AE006113) (208 aa) fasta scores: E(): 3.9e-30, 43.91% id in 189 aa, and to Haemophilus ducreyi hypothetical protein HD1413 SWALL:Q7VLL5 (EMBL:AE017154) (199 aa) fasta scores: E(): 5.1e-27, 43.91% id in 189 aa; hypothetical protein 3999348 3286175 BF9343_3296 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212992.1 3998758 D 272559 CDS YP_212993.1 60682849 3285980 3999351..3999704 1 NC_003228.3 Similar to Clostridium tetani arsenate reductase CTC01181 SWALL:Q895T6 (EMBL:AE015940) (118 aa) fasta scores: E(): 6.3e-26, 58.97% id in 117 aa, and to Bacillus subtilis hypothetical protein YusI or BSU32810 SWALL:YUSI_BACSU (SWALL:O32175) (118 aa) fasta scores: E(): 1.1e-17, 50.43% id in 115 aa; putative ArsC family related protein 3999704 3285980 BF9343_3297 Bacteroides fragilis NCTC 9343 putative ArsC family related protein YP_212993.1 3999351 D 272559 CDS YP_212994.1 60682850 3285964 complement(3999893..4001062) 1 NC_003228.3 Similar in its full length to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4460 SWALL:Q89ZB7 (EMBL:AE016945) (449 aa) fasta scores: E(): 3.8e-15, 41.64% id in 449 aa, and in parts to the rest of the database matches, such as Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4357 SWALL:Q89ZM0 (EMBL:AE016945) (1178 aa) fasta scores: E(): 5.1e-12, 48.54% id in 103 aa; hypothetical protein 4001062 3285964 BF9343_3298 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212994.1 3999893 R 272559 CDS YP_212995.1 60682851 3286302 complement(4001059..4001634) 1 NC_003228.3 Similar to Leptospira interrogans probable RNA polymerase ECF-type sigma factor RpoE2 or LA4098 SWALL:Q8EYW5 (EMBL:AE011563) (192 aa) fasta scores: E(): 8.4e-10, 31.39% id in 172 aa, and to Pseudomonas aeruginosa RNA polymerase sigma-H factor AlgU or AlgT or PA0762 SWALL:RPSH_PSEAE (SWALL:Q06198) (193 aa) fasta scores: E(): 5.3e-07, 27.56% id in 185 aa; putative RNA polymerase sigma fator 4001634 3286302 BF9343_3299 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma fator YP_212995.1 4001059 R 272559 CDS YP_212996.1 60682852 3286291 complement(4001635..4002291) 1 NC_003228.3 Similar to Vibrio cholerae hypothetical protein VC1937 SWALL:Q9KQR1 (EMBL:AE004269) (223 aa) fasta scores: E(): 8.8e-19, 38.94% id in 190 aa, and to Pasteurella multocida hypothetical protein PM2001 SWALL:Q9CJK4 (EMBL:AE006236) (209 aa) fasta scores: E(): 8e-10, 29.5% id in 200 aa; hypothetical protein 4002291 3286291 BF9343_3300 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212996.1 4001635 R 272559 CDS YP_212997.1 60682853 3286358 complement(4002316..4003272) 1 NC_003228.3 Similar to Vibrio cholerae phosphatidate cytidylyltransferase, putative VC1936 SWALL:Q9KQR2 (EMBL:AE004269) (310 aa) fasta scores: E(): 1.4e-56, 47.26% id in 311 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphatidate cytidylyltransferase CdsA or Cds or B0175 or Z0186 or ECS0177 or SF0165 or S0168 SWALL:CDSA_ECOLI (SWALL:P06466) (249 aa) fasta scores: E(): 8.1e-16, 43.75% id in 128 aa; putative cytidylyltransferase 4003272 3286358 BF9343_3301 Bacteroides fragilis NCTC 9343 putative cytidylyltransferase YP_212997.1 4002316 R 272559 CDS YP_212998.1 60682854 3285944 complement(4003269..4003925) 1 NC_003228.3 Similar to Vibrio cholerae CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase- related protein VC1935 SWALL:Q9KQR3 (EMBL:AE004269) (252 aa) fasta scores: E(): 1e-30, 45.16% id in 217 aa, and to Rhizobium meliloti hypothetical transmembrane protein R00487 or SMC02159 SWALL:Q92SC1 (EMBL:AL591783) (221 aa) fasta scores: E(): 5.3e-25, 42.57% id in 202 aa; hypothetical protein 4003925 3285944 BF9343_3302 Bacteroides fragilis NCTC 9343 hypothetical protein YP_212998.1 4003269 R 272559 CDS YP_212999.1 60682855 3285931 4004116..4005948 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative outer membrane protein BT4465 SWALL:Q89ZB2 (EMBL:AE016945) (621 aa) fasta scores: E(): 3.4e-171, 73.73% id in 613 aa, and to Escherichia coli hypothetical protein YfbK or B2270 SWALL:YFBK_ECOLI (SWALL:P76481) (575 aa) fasta scores: E(): 2.5e-73, 47.45% id in 472 aa; conserved exported hypothetical protein 4005948 3285931 BF9343_3303 Bacteroides fragilis NCTC 9343 conserved exported hypothetical protein YP_212999.1 4004116 D 272559 CDS YP_213000.1 60682856 3286316 4006151..4006465 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0779 SWALL:Q8A9N6 (EMBL:AE016929) (107 aa) fasta scores: E(): 6.4e-21, 70.19% id in 104 aa, and to Bacteroides thetaiotaomicron hypothetical protein P5482_21 SWALL:Q8ABX7 (EMBL:AY171301) (90 aa) fasta scores: E(): 6.1e-09, 51.06% id in 94 aa; hypothetical protein 4006465 3286316 BF9343_3304 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213000.1 4006151 D 272559 CDS YP_213001.1 60682857 3286015 complement(4006666..4007538) 1 NC_003228.3 Similar to Clostridium tetani pyridoxal kinase CTC00497 SWALL:Q898F7 (EMBL:AE015937) (293 aa) fasta scores: E(): 3.6e-65, 58.74% id in 286 aa, and to Escherichia coli pyridoxine kinase PdxK or B2418 SWALL:PDXK_ECOLI (SWALL:P40191) (283 aa) fasta scores: E(): 3.7e-11, 27.75% id in 263 aa; putative pyridoxine kinase 4007538 3286015 BF9343_3305 Bacteroides fragilis NCTC 9343 putative pyridoxine kinase YP_213001.1 4006666 R 272559 CDS YP_213002.1 60682858 3285941 complement(4007609..4008187) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BTt4457 SWALL:Q89ZC0 (EMBL:AE016945) (193 aa) fasta scores: E(): 4.8e-48, 67.18% id in 192 aa, and to Shewanella oneidensis conserved hypothetical protein SO1518 SWALL:Q8EGS6 (EMBL:AE015597) (189 aa) fasta scores: E(): 5.7e-16, 35.93% id in 192 aa; hypothetical protein 4008187 3285941 BF9343_3306 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213002.1 4007609 R 272559 CDS YP_213003.1 60682859 3285854 complement(4008184..4009569) 1 NC_003228.3 Similar to Rhodopirellula baltica putative electron transport protein YkgF-putative 4Fe-4S containing oxidoreductase RB7618 SWALL:Q7UNF0 (EMBL:BX294146) (483 aa) fasta scores: E(): 1.5e-88, 51.09% id in 458 aa, and to Escherichia coli putative electron transport protein YkgF or B0307 SWALL:YKGF_ECOLI (SWALL:P77536) (475 aa) fasta scores: E(): 8.2e-52, 37.33% id in 458 aa; hypothetical protein 4009569 3285854 BF9343_3307 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213003.1 4008184 R 272559 CDS YP_213004.1 60682860 3285903 complement(4009566..4010306) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 oxidoreductase, putative PG1171 SWALL:AAQ66271 (EMBL:AE017176) (246 aa) fasta scores: E(): 6e-76, 68.69% id in 246 aa, and to Escherichia coli hypothetical protein YkgE or B0306 SWALL:YKGE_ECOLI (SWALL:P77252) (239 aa) fasta scores: E(): 1.3e-20, 33.2% id in 250 aa; hypothetical protein 4010306 3285903 BF9343_3308 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213004.1 4009566 R 272559 CDS YP_213005.1 60682861 3285962 complement(4010443..4010988) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG1057 SWALL:AAQ66172 (EMBL:AE017175) (197 aa) fasta scores: E(): 4.1e-20, 41.75% id in 194 aa, and to Wolinella succinogenes hypothetical protein WS1656 SWALL:CAE10687 (EMBL:BX571661) (193 aa) fasta scores: E(): 1.2e-19, 42.7% id in 192 aa; hypothetical protein 4010988 3285962 BF9343_3309 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213005.1 4010443 R 272559 CDS YP_213006.1 60682862 3285923 complement(4010975..4011307) 1 NC_003228.3 Similar to Rhizobium meliloti ExsC protein (putative 6-pyruvoyl tetrahydropterin synthase protein) or RB1062 or SMB20939 SWALL:O54059 (EMBL:AJ225561) (119 aa) fasta scores: E(): 2.5e-09, 39.45% id in 109 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri putative 6-pyruvoyl tetrahydrobiopterin synthase YgcM or B2765 or Z4075 or ECS3620 or SF2781 or S2974 SWALL:PTPS_ECOLI (SWALL:Q46903) (121 aa) fasta scores: E(): 1.8e-07, 34.21% id in 114 aa; putative 6-pyruvoyl tetrahydropterin synthase 4011307 3285923 BF9343_3310 Bacteroides fragilis NCTC 9343 putative 6-pyruvoyl tetrahydropterin synthase YP_213006.1 4010975 R 272559 CDS YP_213007.1 60682863 3285228 complement(4011753..4012319) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative MTA/SAH nucleosidase BT4451 SWALL:Q89ZC6 (EMBL:AE016945) (188 aa) fasta scores: E(): 2.6e-61, 79.25% id in 188 aa, and to Pseudomonas putida nucleosidase, putative PP3254 SWALL:Q88HU9 (EMBL:AE016786) (217 aa) fasta scores: E(): 3.5e-15, 36.97% id in 165 aa; hypothetical protein 4012319 3285228 BF9343_3311 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213007.1 4011753 R 272559 CDS YP_213008.1 60682864 3285976 4012472..4013641 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2255 SWALL:Q8A5I4 (EMBL:AE016935) (386 aa) fasta scores: E(): 1.2e-79, 53.01% id in 381 aa, and to Vibrio parahaemolyticus putative inner membrane protein VP2966 SWALL:Q87KL1 (EMBL:AP005083) (337 aa) fasta scores: E(): 4e-08, 25.13% id in 386 aa; hypothetical protein 4013641 3285976 BF9343_3312 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213008.1 4012472 D 272559 CDS YP_213009.1 60682865 3285855 complement(4013719..4014201) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries, such as hypothetical protein BT0772 SWALL:Q8A9P3 (EMBL:AE016929) (158 aa) fasta scores: E(): 1.1e-42, 68.59% id in 156 aa, and hypothetical protein BT4677 SWALL:Q89YQ4 (EMBL:AE016946) (166 aa) fasta scores: E(): 2.3e-14, 33.33% id in 165 aa; hypothetical protein 4014201 3285855 BF9343_3313 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213009.1 4013719 R 272559 CDS YP_213010.1 60682866 3285973 complement(4014311..4015066) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 copper homeostasis protein CutC or PG0714 SWALL:AAQ65885 (EMBL:AE017174) (248 aa) fasta scores: E(): 3.4e-39, 50% id in 240 aa, and to Escherichia coli, and Shigella flexneri copper homeostasis protein CutC or CutCM or B1874 or SF1915 or S2005 SWALL:CUTC_ECOLI (SWALL:P46719) (248 aa) fasta scores: E(): 2.2e-27, 40.98% id in 244 aa; putative copper homeostasis protein 4015066 3285973 BF9343_3314 Bacteroides fragilis NCTC 9343 putative copper homeostasis protein YP_213010.1 4014311 R 272559 CDS YP_213011.1 60682867 3286063 complement(4015158..4016693) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 KH/HDig domain protein PG0401 SWALL:AAQ65606 (EMBL:AE017173) (513 aa) fasta scores: E(): 7.4e-118, 79.8% id in 500 aa, and to Bacillus subtilis hypothetical UPF0144 protein YmdA or BSU16960 SWALL:YMDA_BACSU (SWALL:O31774) (520 aa) fasta scores: E(): 5.4e-66, 44.68% id in 517 aa; conserved hypothetical membrane attached protein 4016693 3286063 BF9343_3315 Bacteroides fragilis NCTC 9343 conserved hypothetical membrane attached protein YP_213011.1 4015158 R 272559 CDS YP_213012.1 60682868 3285896 complement(4016802..4017095) 1 NC_003228.3 Only significant similarity to Bacteroides thetaiotaomicron hypothetical protein BT4418 SWALL:Q89ZF9 (EMBL:AE016945) (96 aa) fasta scores: E(): 1.3e-27, 83.33% id in 96 aa; hypothetical protein 4017095 3285896 BF9343_3316 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213012.1 4016802 R 272559 CDS YP_213013.1 60682869 3285905 complement(4017111..4017404) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT4419 SWALL:Q89ZF8 (EMBL:AE016945) (97 aa) fasta scores: E(): 1.3e-21, 80.41% id in 97 aa; hypothetical protein 4017404 3285905 BF9343_3317 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213013.1 4017111 R 272559 CDS YP_213014.1 60682870 3287880 4017744..4020032 1 NC_003228.3 Similar to Escherichia coli NADP-dependent malic enzyme MaeB or B2463 SWALL:MAO2_ECOLI (SWALL:P76558) (759 aa) fasta scores: E(): 2.3e-127, 49.8% id in 755 aa, and to Rhizobium meliloti NADP-dependent malic enzyme Tme or R00394 or SMC01126 SWALL:MAO2_RHIME (SWALL:O30808) (761 aa) fasta scores: E(): 9.2e-121, 46.1% id in 757 aa; putative NADP-dependent malic enzyme 4020032 maeB 3287880 maeB Bacteroides fragilis NCTC 9343 putative NADP-dependent malic enzyme YP_213014.1 4017744 D 272559 CDS YP_213015.1 60682871 3286787 4020370..4021704 1 NC_003228.3 Similar to Bacteroides fragilis NAD-specific glutamate dehydrogenase GdhB SWALL:DHE2_BACFR (SWALL:P94316) (445 aa) fasta scores: E(): 1.8e-120, 69.21% id in 445 aa, and to Prevotella ruminicola NADP-specific glutamate dehydrogenase GdhA SWALL:DHE4_PRERU (SWALL:P95544) (444 aa) fasta scores: E(): 2.1e-133, 76.52% id in 443 aa; putative NAD-specific glutamate dehydrogenase 2 4021704 gdhB2 3286787 gdhB2 Bacteroides fragilis NCTC 9343 putative NAD-specific glutamate dehydrogenase 2 YP_213015.1 4020370 D 272559 CDS YP_213016.1 60682872 3285970 4022354..4022893 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron RNA polymerase sigma factor SigZ-like protein or BT1278 SWALL:Q9RQ09 (EMBL:AF137263) (183 aa) fasta scores: E(): 1.1e-25, 48.82% id in 170 aa, and to Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 2.9e-20, 41.56% id in 166 aa; putative RNA polymerase sigma factor 4022893 3285970 BF9343_3320 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_213016.1 4022354 D 272559 CDS YP_213017.1 60682873 3286028 4022940..4023929 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative anti-sigma factor BT1279 SWALL:Q8A895 (EMBL:AE016931) (328 aa) fasta scores: E(): 1.4e-45, 40.48% id in 331 aa, and to Bacteroides fragilis FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 8.8e-23, 28.44% id in 334 aa; putative regulatory protein 4023929 3286028 BF9343_3321 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_213017.1 4022940 D 272559 CDS YP_213018.1 60682874 3289199 4024110..4027379 1 NC_003228.3 Identical to the previously sequenced Bacteroides fragilis outer membrane protein Omp117 SWALL:Q9AF86 (EMBL:AF364409) (1089 aa) fasta scores: E(): 0, 100% id in 1089 aa, and similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4404 SWALL:Q89ZH3 (EMBL:AE016945) (1106 aa) fasta scores: E(): 3.7e-212, 50.54% id in 1094 aa; putative outer membrane protein Omp117 4027379 omp117 3289199 omp117 Bacteroides fragilis NCTC 9343 putative outer membrane protein Omp117 YP_213018.1 4024110 D 272559 CDS YP_213019.1 60682875 3286051 4027400..4029028 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries such as hypothetical protein BT4708 SWALL:Q89YM3 (EMBL:AE016946) (531 aa) fasta scores: E(): 5.8e-59, 38.55% id in 555 aa, and hypothetical protein BT1039 SWALL:Q8A8X8 (EMBL:AE016930) (527 aa) fasta scores: E(): 2.9e-55, 35.74% id in 554 aa; hypothetical protein 4029028 3286051 BF9343_3323 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213019.1 4027400 D 272559 CDS YP_213020.1 60682876 3286115 4029060..4030100 1 NC_003228.3 Low similarity to Bacteroides thetaiotaomicron hypothetical protein BT1044 SWALL:Q8A8X3 (EMBL:AE016930) (364 aa) fasta scores: E(): 1.4e-14, 28.49% id in 372 aa, and to Bacteroides thetaiotaomicron putative secreted endoglycosidase BT1048 SWALL:Q8A8W9 (EMBL:AE016930) (375 aa) fasta scores: E(): 5.7e-12, 32.59% id in 359 aa; hypothetical protein 4030100 3286115 BF9343_3324 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213020.1 4029060 D 272559 CDS YP_213021.1 60682877 3285874 4030124..4031305 1 NC_003228.3 Low similarity to Bacteroides thetaiotaomicron hypothetical protein BT1045 SWALL:Q8A8X2 (EMBL:AE016930) (396 aa) fasta scores: E(): 5.4e-06, 25.8% id in 372 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3754 SWALL:Q8A1B2 (EMBL:AE016942) (396 aa) fasta scores: E(): 2.2e-05, 23.09% id in 407 aa; putative lipoprotein 4031305 3285874 BF9343_3325 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213021.1 4030124 D 272559 CDS YP_213022.1 60682878 3285956 4031318..4032349 1 NC_003228.3 hypothetical protein 4032349 3285956 BF9343_3326 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213022.1 4031318 D 272559 CDS YP_213023.1 60682879 3286109 4032671..4033057 1 NC_003228.3 hypothetical protein 4033057 3286109 BF9343_3327 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213023.1 4032671 D 272559 CDS YP_213024.1 60682880 3286090 4033075..4033935 1 NC_003228.3 Similar to Escherichia coli hypothetical adenine-specific methylase YhdJ or B3262 SWALL:YHDJ_ECOLI (SWALL:P28638) (294 aa) fasta scores: E(): 2.3e-65, 58.71% id in 281 aa, and to Bacillus subtilis modification methylase BglII BglIIM SWALL:MTB2_BACSU (SWALL:Q45489) (360 aa) fasta scores: E(): 1.4e-22, 33.91% id in 286 aa; putative DNA methylase 4033935 3286090 BF9343_3328 Bacteroides fragilis NCTC 9343 putative DNA methylase YP_213024.1 4033075 D 272559 CDS YP_213025.1 60682881 3288960 4033939..4035063 1 NC_003228.3 Only similar to Anabaena sp. hypothetical protein ALL4410 SWALL:Q8YNZ9 (EMBL:AP003596) (381 aa) fasta scores: E(): 2.6e-79, 57.21% id in 374 aa; hypothetical protein 4035063 3288960 BF9343_3329 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213025.1 4033939 D 272559 CDS YP_213026.1 60682882 3286077 complement(4035100..4035309) 1 NC_003228.3 hypothetical protein 4035309 3286077 BF9343_3330 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213026.1 4035100 R 272559 CDS YP_213027.1 60682883 3286067 complement(4035324..4035710) 1 NC_003228.3 hypothetical protein 4035710 3286067 BF9343_3331 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213027.1 4035324 R 272559 CDS YP_213028.1 60682884 3286083 4035844..4036299 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2554 SWALL:Q8A4P3 (EMBL:AE016936) (147 aa) fasta scores: E(): 1.4e-27, 62.75% id in 145 aa; putative DNA-binding protein 4036299 3286083 BF9343_3332 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_213028.1 4035844 D 272559 CDS YP_213029.1 60682885 3286157 4037458..4038933 1 NC_003228.3 hypothetical protein 4038933 3286157 BF9343_3333 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213029.1 4037458 D 272559 CDS YP_213030.1 60682886 3286142 4038964..4039320 1 NC_003228.3 putative lipoprotein 4039320 3286142 BF9343_3334 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213030.1 4038964 D 272559 CDS YP_213031.1 60682887 3286065 complement(4040220..4040726) 1 NC_003228.3 hypothetical protein 4040726 3286065 BF9343_3335 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213031.1 4040220 R 272559 CDS YP_213032.1 60682888 3286127 complement(4040733..4041953) 1 NC_003228.3 hypothetical protein 4041953 3286127 BF9343_3336 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213032.1 4040733 R 272559 CDS YP_213033.1 60682889 3286148 4042213..4042422 1 NC_003228.3 hypothetical protein 4042422 3286148 BF9343_3337 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213033.1 4042213 D 272559 CDS YP_213034.1 60682890 3285209 complement(4042464..4043141) 1 NC_003228.3 hypothetical protein 4043141 3285209 BF9343_3338 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213034.1 4042464 R 272559 CDS YP_213035.1 60682891 3286116 complement(4043144..4045249) 1 NC_003228.3 hypothetical protein 4045249 3286116 BF9343_3339 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213035.1 4043144 R 272559 CDS YP_213036.1 60682892 3286094 complement(4045261..4046871) 1 NC_003228.3 putative lipoprotein 4046871 3286094 BF9343_3340 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213036.1 4045261 R 272559 CDS YP_213037.1 60682893 3286124 complement(4046892..4047617) 1 NC_003228.3 hypothetical protein 4047617 3286124 BF9343_3341 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213037.1 4046892 R 272559 CDS YP_213038.1 60682894 3286178 complement(4047628..4049418) 1 NC_003228.3 hypothetical protein 4049418 3286178 BF9343_3342 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213038.1 4047628 R 272559 CDS YP_213039.1 60682895 3286225 complement(4049431..4050759) 1 NC_003228.3 hypothetical protein 4050759 3286225 BF9343_3343 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213039.1 4049431 R 272559 CDS YP_213040.1 60682896 3286136 complement(4050780..4051589) 1 NC_003228.3 hypothetical protein 4051589 3286136 BF9343_3344 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213040.1 4050780 R 272559 CDS YP_213041.1 60682897 3286170 complement(4051813..4054782) 1 NC_003228.3 Onyl significant similarity to Bacteroides thetaiotaomicron phosphoenolpyruvate synthase/pyruvate phosphate dikinase BT1972 SWALL:Q8A6B3 (EMBL:AE016934) (990 aa) fasta scores: E(): 0, 92.5% id in 987 aa, and to Thermoanaerobacter tengcongensis phosphoenolpyruvate synthase/pyruvate phosphate dikinase PpsA or TTE0164 SWALL:Q8RD82 (EMBL:AE012989) (556 aa) fasta scores: E(): 7.5e-33, 31.4% id in 570 aa; hypothetical protein 4054782 3286170 BF9343_3345 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213041.1 4051813 R 272559 CDS YP_213042.1 60682898 3286722 4055197..4056534 1 NC_003228.3 Identical to the previously sequenced Bacteroides fragilis NAD-specific glutamate dehydrogenase GdhB SWALL:DHE2_BACFR (SWALL:P94316) (445 aa) fasta scores: E(): 3.8e-172, 100% id in 445 aa, and to Escherichia coli NADP-specific glutamate dehydrogenase GdhA or B1761 SWALL:DHE4_ECOLI (SWALL:P00370) (447 aa) fasta scores: E(): 2.5e-96, 56.98% id in 444 aa. Note: Also similar to BF3409 (gdhB2) (445 aa) fasta scores: E(): 8.4e-128, 69.213% identity in 445 aa overlap; NAD-specific glutamate dehydrogenase 1 4056534 gdhB 3286722 gdhB Bacteroides fragilis NCTC 9343 NAD-specific glutamate dehydrogenase 1 YP_213042.1 4055197 D 272559 CDS YP_213043.1 60682899 3286203 4056705..4057868 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 peptidase, M24 family PG0889 SWALL:AAQ66034 (EMBL:AE017175) (398 aa) fasta scores: E(): 9.2e-76, 52.2% id in 385 aa, and to Pyrococcus furiosus Xaa-Pro dipeptidase PepQ or PF1343 SWALL:PEPQ_PYRFU (SWALL:P81535) (348 aa) fasta scores: E(): 1.4e-12, 25.58% id in 383 aa; putative peptidase 4057868 3286203 BF9343_3348 Bacteroides fragilis NCTC 9343 putative peptidase YP_213043.1 4056705 D 272559 CDS YP_213044.1 60682900 3286255 complement(4058028..4060790) 1 NC_003228.3 hypothetical protein 4060790 3286255 BF9343_3349 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213044.1 4058028 R 272559 CDS YP_213045.1 60682901 3285937 complement(4060794..4062896) 1 NC_003228.3 hypothetical protein 4062896 3285937 BF9343_3350 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213045.1 4060794 R 272559 CDS YP_213046.1 60682902 3286147 complement(4062921..4063121) 1 NC_003228.3 hypothetical protein 4063121 3286147 BF9343_3351 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213046.1 4062921 R 272559 CDS YP_213047.1 60682903 3286212 complement(4063161..4064606) 1 NC_003228.3 Similar to Prevotella ruminicola polyA polymerase SWALL:Q9ZN65 (EMBL:AB022867) (479 aa) fasta scores: E(): 1.2e-124, 68.07% id in 473 aa, and to Streptomyces avermitilis putative RNA nucleotidyltransferase PcnA or SAV4299 SWALL:Q82FF4 (EMBL:AP005038) (480 aa) fasta scores: E(): 1.5e-47, 36.94% id in 452 aa; putative polyA polymerase 4064606 3286212 BF9343_3352 Bacteroides fragilis NCTC 9343 putative polyA polymerase YP_213047.1 4063161 R 272559 CDS YP_213048.1 60682904 3286200 4064779..4065627 1 NC_003228.3 putative lipoprotein 4065627 3286200 BF9343_3353 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213048.1 4064779 D 272559 CDS YP_213049.1 60682905 3286250 4066003..4069053 1 NC_003228.3 Similar to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 2.8e-37, 25.66% id in 1048 aa, and to Bacteroides fragilis FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 9.3e-36, 25.21% id in 1067 aa; hypothetical protein 4069053 3286250 BF9343_3354 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213049.1 4066003 D 272559 CDS YP_213050.1 60682906 3286121 4069067..4070515 1 NC_003228.3 Very low simialrity to Bacteroides thetaiotaomicron hypothetical protein BT3280 SWALL:Q8A2M5 (EMBL:AE016939) (489 aa) fasta scores: E(): 1.8e-11, 24.29% id in 498 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0191 SWALL:Q8ABB9 (EMBL:AE016926) (463 aa) fasta scores: E(): 2.2e-05, 23.3% id in 412 aa; hypothetical protein 4070515 3286121 BF9343_3355 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213050.1 4069067 D 272559 CDS YP_213051.1 60682907 3286201 4070533..4071735 1 NC_003228.3 putative lipoprotein 4071735 3286201 BF9343_3356 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213051.1 4070533 D 272559 CDS YP_213052.1 60682908 3286241 4071722..4074586 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 peptidase, M16 family PG0196 SWALL:AAQ65430 (EMBL:AE017172) (941 aa) fasta scores: E(): 9.4e-44, 23.22% id in 969 aa, and to Escherichia coli probable zinc protease PqqL or B1494 SWALL:PQQL_ECOLI (SWALL:P31828) (931 aa) fasta scores: E(): 9.8e-26, 22.15% id in 948 aa; putative peptidase 4074586 3286241 BF9343_3357 Bacteroides fragilis NCTC 9343 putative peptidase YP_213052.1 4071722 D 272559 CDS YP_213053.1 60682909 3285940 4074567..4075466 1 NC_003228.3 hypothetical protein 4075466 3285940 BF9343_3358 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213053.1 4074567 D 272559 CDS YP_213054.1 60682910 3286046 complement(4075695..4075904) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi cold shock-like protein CspC SWALL:CSPC_ECOLI (SWALL:P36996) (68 aa) fasta scores: E(): 2e-05, 36.76% id in 68 aa, and to Yersinia pestis cold shock protein YPO1746 SWALL:Q8ZFG3 (EMBL:AJ414150) (69 aa) fasta scores: E(): 1.2e-05, 36.23% id in 69 aa; cold shock-like protein 4075904 3286046 BF9343_3359 Bacteroides fragilis NCTC 9343 cold shock-like protein YP_213054.1 4075695 R 272559 CDS YP_213055.1 60682911 3285886 complement(4076492..4076635) 1 NC_003228.3 no significant database matches; hypothetical protein 4076635 3285886 BF9343_3360 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213055.1 4076492 R 272559 CDS YP_213056.1 60682912 3285998 complement(4076793..4077509) 1 NC_003228.3 Very low similarity to Oceanobacillus iheyensis capsular polysaccharide biosynthesis OB2899 SWALL:Q8EME9 (EMBL:AP004602) (254 aa) fasta scores: E(): 0.0012, 22.41% id in 232 aa; putative LPS biosynthesis related conserved hypothetical protein 4077509 3285998 BF9343_3361 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related conserved hypothetical protein YP_213056.1 4076793 R 272559 CDS YP_213057.1 60682913 3289302 complement(4077506..4078048) 1 NC_003228.3 Similar to Shigella flexneri dTDP-4-dehydrorhamnose 3,5-epimerase RfbC or RmlC or SF2101 SWALL:RFBC_SHIFL (SWALL:P37780) (181 aa) fasta scores: E(): 3.3e-36, 56.18% id in 178 aa, and to previously sequenced Bacteroides fragilis dTDP-6-deoxy-D-glucose-3,5 epimerase RmlC SWALL:Q9XDK5 (EMBL:AF048749) (182 aa) fasta scores: E(): 6e-63, 82.77% id in 180 aa; putative LPS biosynthesis related dTDP-4-dehydrorhamnose 3,5-epimerase 4078048 rfbC1 3289302 rfbC1 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related dTDP-4-dehydrorhamnose 3,5-epimerase YP_213057.1 4077506 R 272559 CDS YP_213058.1 60682914 3289288 complement(4078045..4078932) 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri glucose-1-phosphate thymidylyltransferase RffH or B3789 or SF3863 SWALL:RFFH_ECOLI (SWALL:P27831) (293 aa) fasta scores: E(): 5.7e-74, 66.55% id in 290 aa, and to prveiously sequenced Bacteroides fragilis glucose-1-phosphate thymidyl transferase RmlA SWALL:Q9XDK6 (EMBL:AF048749) (295 aa) fasta scores: E(): 1.2e-101, 88.47% id in 295 aa; putative LPS biosynthesis related glucose-1-phosphate thymidylyltransferase 4078932 rffH1 3289288 rffH1 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glucose-1-phosphate thymidylyltransferase YP_213058.1 4078045 R 272559 CDS YP_213059.1 60682915 3286436 complement(4078957..4079769) 1 NC_003228.3 Similar to Escherichia coli WbbD SWALL:Q03084 (EMBL:AF125322) (275 aa) fasta scores: E(): 6.8e-41, 42.53% id in 268 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1709 SWALL:AAO76816 (EMBL:AE016932) (273 aa) fasta scores: E(): 9.4e-65, 58.05% id in 267 aa; putative LPS biosynthesis related glycosyltransferase 4079769 3286436 BF9343_3364 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_213059.1 4078957 R 272559 CDS YP_213060.1 60682916 3285880 complement(4079756..4080811) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative glycosyltransferase BT1344 SWALL:AAO76451 (EMBL:AE016931) (367 aa) fasta scores: E(): 7.5e-12, 28.52% id in 298 aa, and to Methanosarcina mazei glycosyltransferase MM1946 SWALL:Q8PVL7 (EMBL:AE013431) (375 aa) fasta scores: E(): 5.7e-10, 26.73% id in 303 aa. Note: No similarities found in the N-terminal region; putative LPS biosynthesis related glycosyltransferase 4080811 3285880 BF9343_3365 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_213060.1 4079756 R 272559 CDS YP_213061.1 60682917 3286236 complement(4080811..4081887) 1 NC_003228.3 Similar to Lactobacillus delbrueckii EpsK SWALL:Q9F0B7 (EMBL:AF267127) (353 aa) fasta scores: E(): 5.7e-14, 27.64% id in 340 aa, and to Clostridium perfringens capsular polysaccharide biosynthesis protein CPE0478 SWALL:Q8XN60 (EMBL:AP003186) (355 aa) fasta scores: E(): 5.3e-09, 24.26% id in 342 aa; putative LPS biosynthesis related polysaccharide polymerase 4081887 3286236 BF9343_3366 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related polysaccharide polymerase YP_213061.1 4080811 R 272559 CDS YP_213062.1 60682918 3285959 complement(4081842..4082681) 1 NC_003228.3 Similar to Lactococcus lactis sugar transferase YcbI or LL0216 SWALL:Q9CIZ0 (EMBL:AE006259) (285 aa) fasta scores: E(): 3.1e-32, 42.97% id in 235 aa, and to Streptococcus agalactiae glycosyl transferase CpsN or SAG1166 SWALL:Q8DZD8 (EMBL:AE014245) (295 aa) fasta scores: E(): 2e-23, 38.86% id in 229 aa; putative LPS biosynthesis related glycosyltransferase 4082681 3285959 BF9343_3367 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_213062.1 4081842 R 272559 CDS YP_213063.1 60682919 3285901 complement(4082651..4083637) 1 NC_003228.3 Similar to Streptococcus thermophilus EpsH or EPS1I SWALL:Q93DZ7 (EMBL:AF373595) (316 aa) fasta scores: E(): 7e-23, 29.43% id in 316 aa, and to Streptococcus agalactiae CpsvJ SWALL:Q9AFH3 (EMBL:AF349539) (321 aa) fasta scores: E(): 1.7e-21, 32.83% id in 335 aa; putative LPS biosynthesis related glycosyltransferase 4083637 3285901 BF9343_3368 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_213063.1 4082651 R 272559 CDS YP_213064.1 60682920 3286394 complement(4083637..4084563) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron glycosyltransferase BT3372 SWALL:AAO78478 (EMBL:AE016940) (326 aa) fasta scores: E(): 4.4e-21, 33.2% id in 262 aa, and to Clostridium acetobutylicum glycosyltransferase CAC2348 SWALL:Q97GL8 (EMBL:AE007735) (263 aa) fasta scores: E(): 3.7e-18, 32.8% id in 253 aa; putative LPS biosynthesis related glycosyltransferase 4084563 3286394 BF9343_3369 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_213064.1 4083637 R 272559 CDS YP_213065.1 60682921 3286383 complement(4084592..4085587) 1 NC_003228.3 Similar to Helicobacter pylori alpha1,3-fucosyltransferase FucT SWALL:O30511 (EMBL:AF008596) (478 aa) fasta scores: E(): 4.1e-20, 36.02% id in 322 aa, and to Helicobacter pylori fucosyltransferase HP0651 SWALL:O25366 (EMBL:AE000578) (476 aa) fasta scores: E(): 5.4e-20, 36.77% id in 310 aa; putative LPS biosynthesis related glycosyltransferase 4085587 3286383 BF9343_3370 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_213065.1 4084592 R 272559 CDS YP_213066.1 60682922 3286110 complement(4085595..4086815) 1 NC_003228.3 Similar to Methanobacterium thermoautotrophicum conserved protein MTH340 SWALL:O26440 (EMBL:AE000819) (400 aa) fasta scores: E(): 1.1e-12, 25.18% id in 413 aa, and to Thermoanaerobacter tengcongensis hypothetical protein WcaK or TTE2164 SWALL:Q8R863 (EMBL:AE013163) (359 aa) fasta scores: E(): 5.1e-10, 25.49% id in 357 aa; hypothetical protein 4086815 3286110 BF9343_3371 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213066.1 4085595 R 272559 CDS YP_213067.1 60682923 3286447 complement(4086816..4087802) 1 NC_003228.3 hypothetical protein 4087802 3286447 BF9343_3372 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213067.1 4086816 R 272559 CDS YP_213068.1 60682924 3286430 complement(4087828..4089177) 1 NC_003228.3 Similar to Leptospira interrogans polysaccharide biosynthesis protein RfbX or LA1649 SWALL:Q8F5M3 (EMBL:AE011343) (447 aa) fasta scores: E(): 1.4e-38, 30.57% id in 435 aa, and to Escherichia coli repeat unit exporter Wzx SWALL:Q9X4C7 (EMBL:AF104912) (419 aa) fasta scores: E(): 2.4e-16, 21.67% id in 429 aa; putative LPS biosynthesis related polysaccharide transporter 4089177 3286430 BF9343_3373 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related polysaccharide transporter YP_213068.1 4087828 R 272559 CDS YP_213069.1 60682925 3286426 complement(4089223..4090314) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase WecA or Rfe or B3784 or C4704 or SF3858 SWALL:WECA_ECOLI (SWALL:P24235) (367 aa) fasta scores: E(): 1.7e-19, 27.35% id in 351 aa, and to Bacteroides thetaiotaomicron undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase BT1339 SWALL:AAO76446 (EMBL:AE016931) (368 aa) fasta scores: E(): 7e-112, 78.33% id in 360 aa; putative LPS biosynthesis related glycosyltransferase 4090314 3286426 BF9343_3374 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related glycosyltransferase YP_213069.1 4089223 R 272559 CDS YP_213070.1 60682926 3288899 complement(4090366..4090851) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical 18.5 kDa protein UpbZ SWALL:Q9F768 (EMBL:AF285774) (161 aa) fasta scores: E(): 4e-41, 63.97% id in 161 aa, and to Bacteroides fragilis UpaZ SWALL:Q93QW5 (EMBL:AF189282) (157 aa) fasta scores: E(): 2.4e-36, 60.89% id in 156 aa; putative LPS biosynthesis related transcriptional regulatory protein 4090851 uphZ 3288899 uphZ Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related transcriptional regulatory protein YP_213070.1 4090366 R 272559 CDS YP_213071.1 60682927 3287187 complement(4090896..4091435) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis UpdY SWALL:Q8VSS9 (EMBL:AF366394) (179 aa) fasta scores: E(): 4.9e-47, 65.71% id in 175 aa, and to previously sequenced Bacteroides fragilis UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 1.1e-10, 29.6% id in 179 aa; putative LPS biosynthesis related transcriptional regulatory protein 4091435 uphY 3287187 uphY Bacteroides fragilis NCTC 9343 putative LPS biosynthesis related transcriptional regulatory protein YP_213071.1 4090896 R 272559 CDS YP_213072.1 60682928 3286244 4092169..4092561 1 NC_003228.3 no significant database matches; hypothetical protein 4092561 3286244 BF9343_3377 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213072.1 4092169 D 272559 CDS YP_213073.1 60682929 3286371 4092627..4094786 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4734 SWALL:AAO79839 (EMBL:AE016946) (688 aa) fasta scores: E(): 8.7e-45, 29.28% id in 700 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3385 SWALL:AAO78491 (EMBL:AE016940) (696 aa) fasta scores: E(): 1.9e-33, 23.98% id in 713 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4292 SWALL:AAO79397 (EMBL:AE016944) (697 aa) fasta scores: E(): 1.4e-32, 24.85% id in 688 aa; hypothetical protein 4094786 3286371 BF9343_3378 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213073.1 4092627 D 272559 CDS YP_213074.1 60682930 3286439 4095292..4096815 1 NC_003228.3 hypothetical protein 4096815 3286439 BF9343_3379 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213074.1 4095292 D 272559 CDS YP_213075.1 60682931 3286348 4096820..4097263 1 NC_003228.3 hypothetical protein 4097263 3286348 BF9343_3380 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213075.1 4096820 D 272559 CDS YP_213076.1 60682932 3286393 complement(4097464..4097709) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries such as hypothetical protein BT1988 SWALL:Q8A697 (EMBL:AE016934) (78 aa) fasta scores: E(): 7.6e-11, 48.1% id in 79 aa, and as hypothetical protein BT0708 SWALL:Q8A9V7 (EMBL:AE016928) (81 aa) fasta scores: E(): 1.1e-07, 41.33% id in 75 aa; hypothetical protein 4097709 3286393 BF9343_3381 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213076.1 4097464 R 272559 CDS YP_213077.1 60682933 3286395 4097977..4098447 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0615 SWALL:Q8AA50 (EMBL:AE016928) (172 aa) fasta scores: E(): 1.6e-18, 41.91% id in 167 aa, and to Bacteroides fragilis hypothetical protein ORF8 SWALL:Q9F747 (EMBL:AF285774) (157 aa) fasta scores: E(): 7.3e-11, 34.86% id in 152 aa; hypothetical protein 4098447 3286395 BF9343_3382 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213077.1 4097977 D 272559 CDS YP_213078.1 60682934 3286328 complement(4098661..4099362) 1 NC_003228.3 Similar to Synechococcus elongatus ribose 5-phosphate isomerase A RpiA or TLL1273 SWALL:RPIA_SYNEL (SWALL:Q8DJF2) (236 aa) fasta scores: E(): 5.9e-27, 40.82% id in 218 aa, and to Mus musculus ribose 5-phosphate isomerase RpiA or Rpi SWALL:RPIA_MOUSE (SWALL:P47968) (236 aa) fasta scores: E(): 1.1e-22, 39.25% id in 214 aa; putative ribose 5-phosphate isomerase 4099362 3286328 BF9343_3383 Bacteroides fragilis NCTC 9343 putative ribose 5-phosphate isomerase YP_213078.1 4098661 R 272559 CDS YP_213079.1 60682935 3286279 complement(4099513..4100517) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT1977 SWALL:Q8A6A8 (EMBL:AE016934) (329 aa) fasta scores: E(): 4.5e-61, 48.62% id in 327 aa; hypothetical protein 4100517 3286279 BF9343_3384 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213079.1 4099513 R 272559 CDS YP_213080.1 60682936 3286360 4100605..4101123 1 NC_003228.3 Similar to Brucella melitensis phosphinothricin N-acetyltransferase BMEI0379 SWALL:Q8YIR4 (EMBL:AE009480) (164 aa) fasta scores: E(): 1.3e-10, 30.48% id in 164 aa, and to Methanosarcina mazei hypothetical protein MM1902 SWALL:Q8PVR0 (EMBL:AE013427) (163 aa) fasta scores: E(): 4.3e-10, 27.43% id in 164 aa; putative acetyltransferase 4101123 3286360 BF9343_3385 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_213080.1 4100605 D 272559 CDS YP_213081.1 60682937 3286377 4101212..4101634 1 NC_003228.3 putative DNa-binding protein 4101634 3286377 BF9343_3386 Bacteroides fragilis NCTC 9343 putative DNa-binding protein YP_213081.1 4101212 D 272559 CDS YP_213082.1 60682938 3286345 4101621..4102358 1 NC_003228.3 hypothetical protein 4102358 3286345 BF9343_3387 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213082.1 4101621 D 272559 CDS YP_213083.1 60682939 3286343 4102321..4102845 1 NC_003228.3 hypothetical protein 4102845 3286343 BF9343_3388 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213083.1 4102321 D 272559 CDS YP_213084.1 60682940 3288040 complement(4102982..4103587) 1 NC_003228.3 Similar to Bacillus subtilis holliday junction DNA helicase RuvA or BSU27740 SWALL:RUVA_BACSU (SWALL:O05392) (201 aa) fasta scores: E(): 6.1e-15, 35.64% id in 202 aa, and to Chlorobium tepidum holliday junction DNA helicase RuvA or CT0262 SWALL:RUVA_CHLTE (SWALL:Q8KFR0) (201 aa) fasta scores: E(): 8.5e-18, 37.18% id in 199 aa; putative holliday junction DNA helicase 4103587 ruvA 3288040 ruvA Bacteroides fragilis NCTC 9343 putative holliday junction DNA helicase YP_213084.1 4102982 R 272559 CDS YP_213085.1 60682941 3286280 4103746..4104645 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 oxidoreductase, GFO/IDH/MocA family PG0806 SWALL:AAQ65966 (EMBL:AE017174) (301 aa) fasta scores: E(): 6.9e-78, 71.04% id in 297 aa, and to Corynebacterium glutamicum meso-diaminopimelate D-dehydrogenase Ddh or CGL2617 SWALL:DDH_CORGL (SWALL:P04964) (320 aa) fasta scores: E(): 1.5e-13, 31% id in 329 aa; putative oxidoreductase 4104645 3286280 BF9343_3390 Bacteroides fragilis NCTC 9343 putative oxidoreductase YP_213085.1 4103746 D 272559 CDS YP_213086.1 60682942 3286284 4104787..4105437 1 NC_003228.3 Similar to Clostridium tetani hemolysin III CTC00586 SWALL:Q897Y4 (EMBL:AE015938) (211 aa) fasta scores: E(): 4.4e-24, 38.2% id in 212 aa, and to Bacillus cereus hemolysin III SWALL:HLY3_BACCE (SWALL:P54176) (219 aa) fasta scores: E(): 9.2e-21, 39.59% id in 197 aa; putative hemolysin 4105437 3286284 BF9343_3391 Bacteroides fragilis NCTC 9343 putative hemolysin YP_213086.1 4104787 D 272559 CDS YP_213087.1 60682943 3286361 4105477..4105653 1 NC_003228.3 hypothetical protein 4105653 3286361 BF9343_3392 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213087.1 4105477 D 272559 CDS YP_213088.1 60682944 3286289 4105778..4108171 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 anaerobic ribonucleoside-triphosphate reductase, putative PG1260 SWALL:AAQ66343 (EMBL:AE017176) (798 aa) fasta scores: E(): 1.2e-209, 68.22% id in 793 aa, and to Haemophilus influenzae anaerobic ribonucleoside-triphosphate reductase NrdD or HI0075 SWALL:NRDD_HAEIN (SWALL:P43752) (707 aa) fasta scores: E(): 9.7e-21, 28.97% id in 811 aa; putative anaerobic ribonucleoside-triphosphate reductase 4108171 3286289 BF9343_3393 Bacteroides fragilis NCTC 9343 putative anaerobic ribonucleoside-triphosphate reductase YP_213088.1 4105778 D 272559 CDS YP_213089.1 60682945 3286301 4108178..4108636 1 NC_003228.3 Similar to Pasteurella multocida anaerobic ribonucleoside-triphosphate reductase activating protein NrdG or PM0941 SWALL:NRDG_PASMU (SWALL:Q9CM94) (158 aa) fasta scores: E(): 1.3e-20, 40.64% id in 155 aa, and to Escherichia coli, and Escherichia coli O157:H7 anaerobic ribonucleoside-triphosphate reductase activating protein NrdG or B4237 or Z5847 or ECS5214 SWALL:NRDG_ECOLI (SWALL:P39329) (154 aa) fasta scores: E(): 1.9e-17, 35.89% id in 156 aa; putative anaerobic ribonucleoside-triphosphate reductase activating protein 4108636 3286301 BF9343_3394 Bacteroides fragilis NCTC 9343 putative anaerobic ribonucleoside-triphosphate reductase activating protein YP_213089.1 4108178 D 272559 CDS YP_213090.1 60682946 3286303 4108871..4110277 1 NC_003228.3 Similar to Escherichia coli hypothetical transport protein YebQ or B1828 SWALL:YEBQ_ECOLI (SWALL:P76269) (457 aa) fasta scores: E(): 7.5e-100, 55.75% id in 452 aa, and to Streptomyces glaucescens tetracenomycin C resistance and export protein TcmA SWALL:TCMA_STRGA (SWALL:P39886) (538 aa) fasta scores: E(): 2.4e-34, 30.55% id in 432 aa; putative transport-related, membrane protein 4110277 3286303 BF9343_3395 Bacteroides fragilis NCTC 9343 putative transport-related, membrane protein YP_213090.1 4108871 D 272559 CDS YP_213091.1 60682947 3286317 complement(4110442..4111530) 1 NC_003228.3 Similar to Vibrio vulnificus YJ016 2-aminoethylphosphonate:pyruvate aminotransferase VVA0476 SWALL:BAC96502 (EMBL:AP005346) (371 aa) fasta scores: E(): 6.4e-89, 62.22% id in 360 aa, and to Bacillus cereus (2-aminoethyl)phosphonate--pyruvate transaminase BC1327 SWALL:Q81G81 (EMBL:AE017002) (365 aa) fasta scores: E(): 4.5e-87, 61.29% id in 354 aa; putative aminotransferase 4111530 3286317 BF9343_3396 Bacteroides fragilis NCTC 9343 putative aminotransferase YP_213091.1 4110442 R 272559 CDS YP_213092.1 60682948 3286234 complement(4111536..4112327) 1 NC_003228.3 Similar to Bacillus cereus phosphonoacetaldehyde hydrolase SWALL:O31156 (EMBL:AF030979) (267 aa) fasta scores: E(): 1.1e-43, 46.12% id in 258 aa, and to Salmonella typhi phosphonoacetaldehyde phosphonohydrolase PhnX or STY0471 or T2431 SWALL:Q8Z8W5 (EMBL:AL627266) (269 aa) fasta scores: E(): 3.6e-31, 37.26% id in 263 aa; putative hydrolase 4112327 3286234 BF9343_3397 Bacteroides fragilis NCTC 9343 putative hydrolase YP_213092.1 4111536 R 272559 CDS YP_213093.1 60682949 3286259 4112494..4113402 1 NC_003228.3 hypothetical protein 4113402 3286259 BF9343_3398 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213093.1 4112494 D 272559 CDS YP_213094.1 60682950 3286114 complement(4113529..4114884) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 membrane-associated zinc metalloprotease, putative PG0383 SWALL:AAQ65589 (EMBL:AE017173) (439 aa) fasta scores: E(): 7.7e-47, 49.88% id in 451 aa, and to Haemophilus influenzae hypothetical zinc metalloprotease HI0918 SWALL:YAEL_HAEIN (SWALL:P44936) (443 aa) fasta scores: E(): 1.1e-20, 27.9% id in 473 aa, and to Escherichia coli, and Escherichia coli O157:H7 protease EcfE or B0176 or Z0187 or ECS0178 SWALL:ECFE_ECOLI (SWALL:P37764) (450 aa) fasta scores: E(): 6.4e-18, 28.05% id in 474 aa; putative protease 4114884 3286114 BF9343_3399 Bacteroides fragilis NCTC 9343 putative protease YP_213094.1 4113529 R 272559 CDS YP_213095.1 60682951 3286332 complement(4114904..4116070) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dxr or PG1364 SWALL:AAQ66428 (EMBL:AE017176) (385 aa) fasta scores: E(): 7.6e-84, 60.05% id in 383 aa, and to Bacillus subtilis 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dxr or BSU16550 SWALL:DXR_BACSU (SWALL:O31753) (388 aa) fasta scores: E(): 9.7e-61, 46.99% id in 366 aa; putative terpenoid biosynthesis related reductoisomerase 4116070 3286332 BF9343_3400 Bacteroides fragilis NCTC 9343 putative terpenoid biosynthesis related reductoisomerase YP_213095.1 4114904 R 272559 CDS YP_213096.1 60682952 3286246 complement(4116073..4116933) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative membrane peptidase BT2003 SWALL:Q8A683 (EMBL:AE016934) (285 aa) fasta scores: E(): 2.1e-92, 82.16% id in 286 aa, and in its C-terminal region to the C-terminal region of Escherichia coli, and Shigella flexneri lipoprotein precursor NlpD or B2742 or SF2765 or S2958 SWALL:NLPD_ECOLI (SWALL:P33648) (379 aa) fasta scores: E(): 1.3e-09, 40.17% id in 117 aa; putative peptidase 4116933 3286246 BF9343_3401 Bacteroides fragilis NCTC 9343 putative peptidase YP_213096.1 4116073 R 272559 CDS YP_213097.1 60682953 3286305 complement(4116999..4117541) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 16S rRNA processing protein RimM, putative PG1365 SWALL:AAQ66429 (EMBL:AE017176) (175 aa) fasta scores: E(): 1.4e-16, 33.33% id in 177 aa, and to Bacillus halodurans probable 16S rRNA processing protein RimM or BH2480 SWALL:RIMM_BACHD (SWALL:Q9KA14) (173 aa) fasta scores: E(): 5.5e-07, 28.14% id in 167 aa; putative 16S rRNA processing protein 4117541 3286305 BF9343_3402 Bacteroides fragilis NCTC 9343 putative 16S rRNA processing protein YP_213097.1 4116999 R 272559 CDS YP_213098.1 60682954 3286260 complement(4117538..4118842) 1 NC_003228.3 Similar to Borrelia burgdorferi UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA or BB0472 SWALL:MURA_BORBU (SWALL:O51428) (427 aa) fasta scores: E(): 3e-72, 46.08% id in 434 aa, and to Bacillus subtilis UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 MurAB or MurA or MurZ or BSU37100 SWALL:MUA2_BACSU (SWALL:P19670) (429 aa) fasta scores: E(): 8.1e-36, 35.1% id in 433 aa; putative peptidoglycan biosynthesis related protein 4118842 3286260 BF9343_3403 Bacteroides fragilis NCTC 9343 putative peptidoglycan biosynthesis related protein YP_213098.1 4117538 R 272559 CDS YP_213099.1 60682955 3286209 complement(4118890..4119507) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2006 SWALL:Q8A680 (EMBL:AE016934) (204 aa) fasta scores: E(): 5.1e-70, 82.43% id in 205 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1367 SWALL:AAQ66431 (EMBL:AE017176) (200 aa) fasta scores: E(): 3.3e-37, 50.98% id in 204 aa; hypothetical protein 4119507 3286209 BF9343_3404 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213099.1 4118890 R 272559 CDS YP_213100.1 60682956 3286161 complement(4119559..4120275) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0778 SWALL:AAQ65939 (EMBL:AE017174) (239 aa) fasta scores: E(): 2.7e-34, 46.87% id in 224 aa, and to Escherichia coli hypothetical protease YeaZ or B1807 SWALL:YEAZ_ECOLI (SWALL:P76256) (231 aa) fasta scores: E(): 1.4e-08, 28.88% id in 225 aa; putative glycoprotease family exported protein 4120275 3286161 BF9343_3405 Bacteroides fragilis NCTC 9343 putative glycoprotease family exported protein YP_213100.1 4119559 R 272559 CDS YP_213101.1 60682957 3286295 4121273..4122151 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0513 SWALL:AAQ65707 (EMBL:AE017173) (296 aa) fasta scores: E(): 4.2e-51, 54.05% id in 296 aa, and to Bacillus anthracis hypothetical protein BA4011 SWALL:Q81WG5 (EMBL:AE017036) (291 aa) fasta scores: E(): 2e-24, 33.67% id in 291 aa; hypothetical protein 4122151 3286295 BF9343_3406 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213101.1 4121273 D 272559 CDS YP_213102.1 60682958 3289181 4122164..4122778 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri guanylate kinase Gmk or SpoR or B3648 or C4473 or SF3688 or S4081 SWALL:KGUA_ECOLI (SWALL:P24234) (207 aa) fasta scores: E(): 8.1e-21, 42.39% id in 184 aa, and to Clostridium perfringens guanylate kinase Gmk or CPE1748 SWALL:KGUA_CLOPE (SWALL:Q8XJK8) (215 aa) fasta scores: E(): 3.7e-23, 41.8% id in 177 aa; putative guanylate kinase 4122778 gmk 3289181 gmk Bacteroides fragilis NCTC 9343 putative guanylate kinase YP_213102.1 4122164 D 272559 CDS YP_213103.1 60682959 3289269 4122812..4123417 1 NC_003228.3 Similar to Bacillus subtilis nicotinate-nucleotide adenylyltransferase NadD or BSU25640 SWALL:NADD_BACSU (SWALL:P54455) (189 aa) fasta scores: E(): 1.3e-19, 35.07% id in 191 aa, and to Porphyromonas gingivalis W83 nicotinate NadD or PG0058 SWALL:AAQ65308 (EMBL:AE017172) (197 aa) fasta scores: E(): 1.2e-30, 48.27% id in 174 aa; putative nicotinate-nucleotide adenylyltransferase 4123417 nadD 3289269 nadD Bacteroides fragilis NCTC 9343 putative nicotinate-nucleotide adenylyltransferase YP_213103.1 4122812 D 272559 CDS YP_213104.1 60682960 3286216 complement(4123421..4124452) 1 NC_003228.3 Similar to Methanosarcina mazei conserved protein MM0540 SWALL:Q8PZF4 (EMBL:AE013279) (283 aa) fasta scores: E(): 8.8e-24, 36.62% id in 243 aa, and to Bacillus subtilis hypothetical protein YkuE or BSU14050 SWALL:YKUE_BACSU (SWALL:O34870) (287 aa) fasta scores: E(): 1.5e-13, 30.63% id in 235 aa; putative phosphoesterase 4124452 3286216 BF9343_3409 Bacteroides fragilis NCTC 9343 putative phosphoesterase YP_213104.1 4123421 R 272559 CDS YP_213105.1 60682961 3286235 4124573..4125469 1 NC_003228.3 Similar to Chlorobium tepidum 1,4-dihydroxy-2-naphthoate octaprenyltransferase MenA or CT1511 SWALL:Q8KCB3 (EMBL:AE012907) (307 aa) fasta scores: E(): 3.2e-40, 42.26% id in 291 aa, and to Escherichia coli 1,4-dihydroxy-2-naphthoate octaprenyltransferase MenA or B3930 SWALL:MENA_ECOLI (SWALL:P32166) (308 aa) fasta scores: E(): 1.2e-31, 34.41% id in 308 aa; putative prenyltransferase 4125469 3286235 BF9343_3410 Bacteroides fragilis NCTC 9343 putative prenyltransferase YP_213105.1 4124573 D 272559 CDS YP_213106.1 60682962 3289296 complement(4125474..4126613) 1 NC_003228.3 Similar to Escherichia coli dTDP-glucose 4,6-dehydratase RffG or B3788 SWALL:RFFG_ECOLI (SWALL:P27830) (355 aa) fasta scores: E(): 1.2e-51, 50.4% id in 371 aa, and to Xanthomonas campestris dtdp-glucose 4,6-dehydratase RfbB or RmlB or XCC0621 SWALL:RFBB_XANCP (SWALL:P55295) (351 aa) fasta scores: E(): 2.5e-54, 52.03% id in 369 aa; putative dTDP-glucose 4,6-dehydratase 4126613 rffG 3289296 rffG Bacteroides fragilis NCTC 9343 putative dTDP-glucose 4,6-dehydratase YP_213106.1 4125474 R 272559 CDS YP_213107.1 60682963 3287821 complement(4126633..4127496) 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri glucose-1-phosphate thymidylyltransferase RffH or B3789 or SF3863 or S3897 SWALL:RFFH_ECOLI (SWALL:P27831) (293 aa) fasta scores: E(): 4.6e-71, 60.7% id in 285 aa, and to Clostridium perfringens glucose-1-phosphate thymidylyltransferase RfbA or CPE0616 SWALL:Q8XMS2 (EMBL:AP003187) (293 aa) fasta scores: E(): 4.1e-77, 67.36% id in 285 aa; putative glucose-1-phosphate thymidylyltransferase 4127496 rffH2 3287821 rffH2 Bacteroides fragilis NCTC 9343 putative glucose-1-phosphate thymidylyltransferase YP_213107.1 4126633 R 272559 CDS YP_213108.1 60682964 3286153 complement(4127673..4128164) 1 NC_003228.3 Similar to Pseudomonas syringae phosphoesterase, putative PSPTO2610 SWALL:Q882L6 (EMBL:AE016865) (152 aa) fasta scores: E(): 2.8e-07, 32.45% id in 151 aa, and to Clostridium tetani putative phosphoesterase CTC02354 SWALL:Q891L7 (EMBL:AE015944) (167 aa) fasta scores: E(): 6.1e-06, 31.15% id in 138 aa; putative phosphoesterase 4128164 3286153 BF9343_3413 Bacteroides fragilis NCTC 9343 putative phosphoesterase YP_213108.1 4127673 R 272559 CDS YP_213109.1 60682965 3287744 4128200..4130296 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 polyphosphate kinase Ppk or B2501 or Z3764 or ECS3363 SWALL:PPK_ECOLI (SWALL:P28688) (687 aa) fasta scores: E(): 6.4e-84, 37.13% id in 692 aa, and to Porphyromonas gingivalis W83 polyphosphate kinase Ppk or PG1885 SWALL:AAQ66869 (EMBL:AE017178) (695 aa) fasta scores: E(): 2.6e-123, 49.63% id in 691 aa; putative polyphosphate kinase 4130296 ppk 3287744 ppk Bacteroides fragilis NCTC 9343 putative polyphosphate kinase YP_213109.1 4128200 D 272559 CDS YP_213110.1 60682966 3286205 4130362..4132611 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG1961 SWALL:AAQ66939 (EMBL:AE017178) (755 aa) fasta scores: E(): 1.4e-153, 54.77% id in 743 aa, and to Vibrio parahaemolyticus Pho4 family protein VP0418 SWALL:Q87SK5 (EMBL:AP005074) (419 aa) fasta scores: E(): 5.6e-08, 22.5% id in 431 aa; hypothetical protein 4132611 3286205 BF9343_3415 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213110.1 4130362 D 272559 CDS YP_213111.1 60682967 3286100 complement(4132776..4133174) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system response regulator BT2034 SWALL:Q8A652 (EMBL:AE016934) (132 aa) fasta scores: E(): 8.7e-35, 72.72% id in 132 aa, and to Archaeoglobus fulgidus response regulator AF1384 SWALL:O28887 (EMBL:AE001009) (122 aa) fasta scores: E(): 2.7e-09, 36.97% id in 119 aa, and to Gloeobacter violaceus two-component response regulator GLR1684 SWALL:BAC89625 (EMBL:AP006573) (136 aa) fasta scores: E(): 2.1e-08, 40.18% id in 107 aa; putative response regulator 4133174 3286100 BF9343_3416 Bacteroides fragilis NCTC 9343 putative response regulator YP_213111.1 4132776 R 272559 CDS YP_213112.1 60682968 3286182 4133284..4134918 1 NC_003228.3 Similar to Chlorobium tepidum ABC transporter, ATP-binding protein CT0375 SWALL:Q8KFF2 (EMBL:AE012815) (651 aa) fasta scores: E(): 4.4e-69, 42.23% id in 547 aa, and to Bacillus subtilis hypothetical ABC transporter ATP-binding protein YdiF or BSU05950 SWALL:YDIF_BACSU (SWALL:O05519) (642 aa) fasta scores: E(): 1.5e-61, 39.01% id in 546 aa; putative ABC transport system, ATP-binding protein 4134918 3286182 BF9343_3417 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_213112.1 4133284 D 272559 CDS YP_213113.1 60682969 3286239 4136111..4137370 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 efflux transporter, RND family, MFP subunit PG0065 SWALL:AAQ65315 (EMBL:AE017172) (324 aa) fasta scores: E(): 9.1e-63, 56.25% id in 320 aa, and to Alcaligenes eutrophus nickel and cobalt resistance protein CnrB SWALL:CNRB_ALCEU (SWALL:P37973) (395 aa) fasta scores: E(): 8.9e-08, 23.84% id in 369 aa; putative metal resistance related exported protein 4137370 3286239 BF9343_3418 Bacteroides fragilis NCTC 9343 putative metal resistance related exported protein YP_213113.1 4136111 D 272559 CDS YP_213114.1 60682970 3286184 4137429..4140515 1 NC_003228.3 Similar to Anabaena sp. cation efflux system protein ALL7618 SWALL:Q8ZS94 (EMBL:AP003602) (1058 aa) fasta scores: E(): 4.7e-151, 42.23% id in 1030 aa, and to Escherichia coli cation efflux system protein CusA or B0575 SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 2.5e-91, 32.95% id in 1047 aa; putative metal resistance related trasport membrane protein 4140515 3286184 BF9343_3419 Bacteroides fragilis NCTC 9343 putative metal resistance related trasport membrane protein YP_213114.1 4137429 D 272559 CDS YP_213115.1 60682971 3286087 4140535..4141713 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BTt2040 SWALL:Q8A646 (EMBL:AE016934) (397 aa) fasta scores: E(): 1.7e-112, 79.59% id in 397 aa, and to Porphyromonas gingivalis W83 outer membrane efflux protein PG0063 SWALL:AAQ65313 (EMBL:AE017172) (392 aa) fasta scores: E(): 4.9e-34, 30.74% id in 387 aa; putative puter membrane protein 4141713 3286087 BF9343_3420 Bacteroides fragilis NCTC 9343 putative puter membrane protein YP_213115.1 4140535 D 272559 CDS YP_213116.1 60682972 3286141 complement(4141877..4142917) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2901 SWALL:Q8A3Q3 (EMBL:AE016938) (341 aa) fasta scores: E(): 2.3e-16, 31.85% id in 339 aa; hypothetical protein 4142917 3286141 BF9343_3421 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213116.1 4141877 R 272559 CDS YP_213117.1 60682973 3286111 complement(4142983..4143570) 1 NC_003228.3 hypothetical protein 4143570 3286111 BF9343_3422 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213117.1 4142983 R 272559 CDS YP_213118.1 60682974 3286162 complement(4143567..4143770) 1 NC_003228.3 hypothetical protein 4143770 3286162 BF9343_3423 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213118.1 4143567 R 272559 CDS YP_213119.1 60682975 3286146 complement(4143767..4145185) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 NOL1/NOP2/sun family protein PG0432 SWALL:AAQ65632 (EMBL:AE017173) (468 aa) fasta scores: E(): 4.4e-58, 45.12% id in 472 aa, and to Lactobacillus plantarum rRNA methylase LP_1724 SWALL:Q88WC1 (EMBL:AL935257) (455 aa) fasta scores: E(): 2.5e-33, 31.84% id in 471 aa; hypothetical protein 4145185 3286146 BF9343_3424 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213119.1 4143767 R 272559 CDS YP_213120.1 60682976 3286152 complement(4145387..4145755) 1 NC_003228.3 Low similarity to the N-terminal region of Coxiella burnetii conserved domain protein CBU1788 SWALL:Q83AU1 (EMBL:AE016965) (194 aa) fasta scores: E(): 3.8e-18, 61.29% id in 93 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3031 SWALL:Q8A3C3 (EMBL:AE016938) (208 aa) fasta scores: E(): 2.9e-17, 61.76% id in 102 aa; hypothetical protein 4145755 3286152 BF9343_3425 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213120.1 4145387 R 272559 CDS YP_213121.1 60682977 3286185 4145871..4146497 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2043 SWALL:Q8A643 (EMBL:AE016934) (250 aa) fasta scores: E(): 2.5e-28, 45.41% id in 240 aa; hypothetical protein 4146497 3286185 BF9343_3426 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213121.1 4145871 D 272559 CDS YP_213122.1 60682978 3286057 4146497..4147045 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 RNA polymerase sigma-70 factor, ECF subfamily PG1660 SWALL:AAQ66679 (EMBL:AE017177) (174 aa) fasta scores: E(): 4.9e-12, 32.38% id in 176 aa, and to Caulobacter crescentus putative RNA polymerase sigma factor CC1649 SWALL:Q9A7S1 (EMBL:AE005839) (194 aa) fasta scores: E(): 1.8e-11, 29.44% id in 180 aa; putative RNA polymerase sigma factor 4147045 3286057 BF9343_3427 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_213122.1 4146497 D 272559 CDS YP_213123.1 60682979 3286118 4147029..4147358 1 NC_003228.3 hypothetical protein 4147358 3286118 BF9343_3428 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213123.1 4147029 D 272559 CDS YP_213124.1 60682980 3286139 4147834..4149108 1 NC_003228.3 Similar to Bacillus subtilis probable cardiolipin synthetase 2 YwnE or BSU36590 SWALL:CLS2_BACSU (SWALL:P71040) (482 aa) fasta scores: E(): 1.5e-48, 35.87% id in 407 aa, and to Enterococcus faecalis cardiolipin synthetase, putative EF0631 SWALL:Q838D8 (EMBL:AE016948) (481 aa) fasta scores: E(): 1.7e-48, 38.55% id in 402 aa. Note: This CDS appears to be shorter in its N-terminal region than most of the database matches it has; putative phospholipid biosynthesis related protein 4149108 3286139 BF9343_3429 Bacteroides fragilis NCTC 9343 putative phospholipid biosynthesis related protein YP_213124.1 4147834 D 272559 CDS YP_213125.1 60682981 3287200 4149174..4149968 1 NC_003228.3 Similar to Bacillus subtilis thymidylate synthase B ThyB or BSU21820 SWALL:TYSB_BACSU (SWALL:P11044) (264 aa) fasta scores: E(): 2e-77, 69.31% id in 264 aa, and to Porphyromonas gingivalis W83 thymidylate synthase ThyA or PG2060 SWALL:AAQ67021 (EMBL:AE017179) (267 aa) fasta scores: E(): 4.6e-87, 76.89% id in 264 aa; putative thymidylate synthase B 4149968 thyB 3287200 thyB Bacteroides fragilis NCTC 9343 putative thymidylate synthase B YP_213125.1 4149174 D 272559 CDS YP_213126.1 60682982 3285473 4149982..4150482 1 NC_003228.3 Similar to Bacillus subtilis dihydrofolate reductase DfrA or BSU21810 SWALL:DYR_BACSU (SWALL:P11045) (168 aa) fasta scores: E(): 3.1e-19, 41.61% id in 161 aa, and to Neisseria gonorrhoeae dihydrofolate reductase FolA SWALL:DYR_NEIGO (SWALL:P04174) (162 aa) fasta scores: E(): 1.4e-20, 44.44% id in 162 aa; putative dihydrofolate reductase 4150482 dfrA 3285473 dfrA Bacteroides fragilis NCTC 9343 putative dihydrofolate reductase YP_213126.1 4149982 D 272559 CDS YP_213127.1 60682983 3286047 complement(4150479..4150955) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 transcriptional regulator, AsnC family PG1127 SWALL:AAQ66235 (EMBL:AE017175) (155 aa) fasta scores: E(): 7.5e-24, 43.91% id in 148 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri regulatory protein AsnC or B3743 or C4671 or Z5244 or ECS4685 or SF3823 or S3945 SWALL:ASNC_ECOLI (SWALL:P03809) (152 aa) fasta scores: E(): 3.5e-14, 35.33% id in 150 aa; putative AsnC family regulatory protein 4150955 3286047 BF9343_3432 Bacteroides fragilis NCTC 9343 putative AsnC family regulatory protein YP_213127.1 4150479 R 272559 CDS YP_213128.1 60682984 3286135 4151106..4152386 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2050 SWALL:Q8A636 (EMBL:AE016934) (425 aa) fasta scores: E(): 1.6e-138, 74.7% id in 423 aa; putative lipoprotein 4152386 3286135 BF9343_3433 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213128.1 4151106 D 272559 CDS YP_213129.1 60682985 3286084 complement(4152895..4153359) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2052 SWALL:Q8A634 (EMBL:AE016934) (145 aa) fasta scores: E(): 8.5e-38, 75.35% id in 142 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0779 SWALL:AAQ65940 (EMBL:AE017174) (157 aa) fasta scores: E(): 2.1e-26, 54.24% id in 153 aa; hypothetical protein 4153359 3286084 BF9343_3434 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213129.1 4152895 R 272559 CDS YP_213130.1 60682986 3286102 complement(4153359..4153949) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2053 SWALL:Q8A633 (EMBL:AE016934) (197 aa) fasta scores: E(): 6.7e-49, 71.72% id in 191 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0780 SWALL:AAQ65941 (EMBL:AE017174) (204 aa) fasta scores: E(): 8.4e-10, 47.31% id in 205 aa; hypothetical protein 4153949 3286102 BF9343_3435 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213130.1 4153359 R 272559 CDS YP_213131.1 60682987 3286061 complement(4153986..4154456) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2054 SWALL:Q8A632 (EMBL:AE016934) (161 aa) fasta scores: E(): 1.4e-38, 67.7% id in 161 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0781 SWALL:AAQ65942 (EMBL:AE017174) (156 aa) fasta scores: E(): 4.2e-12, 37.33% id in 150 aa; hypothetical protein 4154456 3286061 BF9343_3436 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213131.1 4153986 R 272559 CDS YP_213132.1 60682988 3286138 complement(4154463..4155284) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 MotA/TolQ/ExbB proton channel family protein PG0782 SWALL:AAQ65943 (EMBL:AE017174) (270 aa) fasta scores: E(): 6.7e-60, 65.56% id in 273 aa, and to Leptospira interrogans biopolymer transport protein, putative LA3244 SWALL:Q8F192 (EMBL:AE011485) (270 aa) fasta scores: E(): 7.1e-11, 25.74% id in 268 aa; hypothetical protein 4155284 3286138 BF9343_3437 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213132.1 4154463 R 272559 CDS YP_213133.1 60682989 3286005 complement(4155612..4156388) 1 NC_003228.3 Similar to Vibrio vulnificus putative Mg-dependent DNAse VV10903 SWALL:Q8DDQ5 (EMBL:AE016800) (256 aa) fasta scores: E(): 1.9e-38, 41.4% id in 256 aa, and to Staphylococcus aureus hypothetical protein SAV0491 or SA0449 or MW0446 SWALL:Q99WB2 (EMBL:AP003359) (257 aa) fasta scores: E(): 1.8e-29, 38.52% id in 257 aa; putative DNAse related protein 4156388 3286005 BF9343_3438 Bacteroides fragilis NCTC 9343 putative DNAse related protein YP_213133.1 4155612 R 272559 CDS YP_213134.1 60682990 3286034 complement(4156392..4157102) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2057 SWALL:Q8A629 (EMBL:AE016934) (238 aa) fasta scores: E(): 3.8e-65, 73.93% id in 234 aa; hypothetical protein 4157102 3286034 BF9343_3439 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213134.1 4156392 R 272559 CDS YP_213135.1 60682991 3286068 complement(4157110..4158084) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 polyprenyl synthetase PG0784 SWALL:AAQ65945 (EMBL:AE017174) (325 aa) fasta scores: E(): 5.9e-56, 50% id in 324 aa, and to Sulfolobus acidocaldarius geranylgeranyl pyrophosphate synthetase Gds SWALL:GGPP_SULAC (SWALL:P39464) (330 aa) fasta scores: E(): 3.8e-31, 34.16% id in 322 aa; putative isoprenoid biosynthesis related protein 4158084 3286068 BF9343_3440 Bacteroides fragilis NCTC 9343 putative isoprenoid biosynthesis related protein YP_213135.1 4157110 R 272559 CDS YP_213136.1 60682992 3286050 complement(4158164..4158847) 1 NC_003228.3 Only similar to Porphyromonas gingivalis W83 TonB protein, putative PG0785 SWALL:AAQ65946 (EMBL:AE017174) (230 aa) fasta scores: E(): 1.2e-30, 46.15% id in 234 aa, and to Bacteroides thetaiotaomicron TonB BT2665 SWALL:Q8A4D4 (EMBL:AE016937) (270 aa) fasta scores: E(): 8.1e-23, 40.26% id in 226 aa; conserved hypothetical outer membrane protein 4158847 3286050 BF9343_3441 Bacteroides fragilis NCTC 9343 conserved hypothetical outer membrane protein YP_213136.1 4158164 R 272559 CDS YP_213137.1 60682993 3289173 4159003..4159692 1 NC_003228.3 Similar to Bacillus subtilis cytidylate kinase Cmk or JofC or BSU22890 SWALL:KCY_BACSU (SWALL:P38493) (224 aa) fasta scores: E(): 1.6e-28, 45.57% id in 226 aa, and to Porphyromonas gingivalis W83 cytidylate kinase Cmk or PG0603 SWALL:AAQ65787 (EMBL:AE017174) (231 aa) fasta scores: E(): 2.6e-51, 65.47% id in 223 aa; putative cytidylate kinase 4159692 cmk 3289173 cmk Bacteroides fragilis NCTC 9343 putative cytidylate kinase YP_213137.1 4159003 D 272559 CDS YP_213138.1 60682994 3286026 4159805..4160677 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH or LytB or TTE1352 SWALL:ISPH_THETN (SWALL:Q8RA76) (288 aa) fasta scores: E(): 5.7e-28, 36.8% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH or LytB or B0029 or C0033 or Z0034 or ECS0032 SWALL:ISPH_ECOLI (SWALL:P22565) (316 aa) fasta scores: E(): 7.7e-18, 28.07% id in 285 aa; putative isoprene biosynthesis related reductase protein 4160677 3286026 BF9343_3443 Bacteroides fragilis NCTC 9343 putative isoprene biosynthesis related reductase protein YP_213138.1 4159805 D 272559 CDS YP_213139.1 60682995 3285993 4160751..4161731 1 NC_003228.3 Similar to Bacillus subtilis 6-phosphofructokinase PfkA or Pfk or BSU29190 SWALL:K6PF_BACSU (SWALL:O34529) (319 aa) fasta scores: E(): 6.5e-56, 48.91% id in 323 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 6-phosphofructokinase isozyme I PfkA or B3916 or Z5460 or ECS4841 or SF3994 or S3753 SWALL:K6P1_ECOLI (SWALL:P06998) (320 aa) fasta scores: E(): 1.6e-48, 47.69% id in 325 aa; putative 6-phosphofructokinase 1 4161731 pfkA1 3285993 pfkA1 Bacteroides fragilis NCTC 9343 putative 6-phosphofructokinase 1 YP_213139.1 4160751 D 272559 CDS YP_213140.1 60682996 3286025 complement(4161788..4162657) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron putative oxidoreductase BT2066 SWALL:Q8A620 (EMBL:AE016934) (283 aa) fasta scores: E(): 9.5e-75, 70.29% id in 276 aa, the rest of the database matches are to eukaryotic entries such as: Drosophila melanogaster protein CG30495 or CG17986 SWALL:Q9V4P9 (EMBL:AE003840) (331 aa) fasta scores: E(): 8.3e-26, 35.84% id in 279 aa; conserved hypothetical dehydrogenase protein 4162657 3286025 BF9343_3445 Bacteroides fragilis NCTC 9343 conserved hypothetical dehydrogenase protein YP_213140.1 4161788 R 272559 CDS YP_213141.1 60682997 3285985 complement(4162657..4163889) 1 NC_003228.3 Similar to Mycobacterium bovis possible oxidoreductase MB3394 SWALL:Q7TWM9 (EMBL:BX248345) (396 aa) fasta scores: E(): 1.5e-56, 42.48% id in 379 aa, and to Thermoanaerobacter brockii NADH oxidase SWALL:NADO_THEBR (SWALL:P32382) (651 aa) fasta scores: E(): 1.8e-22, 28.49% id in 393 aa; putative oxidoreductase 4163889 3285985 BF9343_3446 Bacteroides fragilis NCTC 9343 putative oxidoreductase YP_213141.1 4162657 R 272559 CDS YP_213142.1 60682998 3285982 complement(4163904..4164665) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron 3-oxo-5-alpha-steroid 4-dehydrogenase BT2068 SWALL:Q8A618 (EMBL:AE016934) (253 aa) fasta scores: E(): 5.8e-82, 73.12% id in 253 aa, the rest of the database matches are to eukaryotic entries such as Rattus norvegicus 3-oxo-5-alpha-steroid 4-dehydrogenase 1 Srd5A1 SWALL:S5A1_RAT (SWALL:P24008) (259 aa) fasta scores: E(): 1.2e-27, 35.03% id in 254 aa; putative membrane dehydrogenase protein 4164665 3285982 BF9343_3447 Bacteroides fragilis NCTC 9343 putative membrane dehydrogenase protein YP_213142.1 4163904 R 272559 CDS YP_213143.3 589285997 3285997 complement(4164871..4166214) 1 NC_003228.3 Similar to Lactococcus lactis citrate synthase SWALL:Q9RAT5 (EMBL:AF088222) (441 aa) fasta scores: E(): 7.2e-71, 44.87% id in 439 aa, and to Thiobacillus ferrooxidans citrate synthase GltA SWALL:CISY_THIFE (SWALL:P51045) (386 aa) fasta scores: E(): 4.8e-16, 36.04% id in 394 aa; putative citrate synthase 4166214 3285997 BF9343_3448 Bacteroides fragilis NCTC 9343 putative citrate synthase YP_213143.3 4164871 R 272559 CDS YP_213144.1 60683000 3287902 complement(4166227..4167417) 1 NC_003228.3 Similar to Bacillus subtilis isocitrate dehydrogenase [NADP] Icd or CitC or BSU29130 SWALL:IDH_BACSU (SWALL:P39126) (423 aa) fasta scores: E(): 1e-58, 59.09% id in 418 aa, and to Streptococcus salivarius isocitrate dehydrogenase [NADP] Icd SWALL:IDH_STRSL (SWALL:Q59985) (391 aa) fasta scores: E(): 1.6e-91, 60.71% id in 392 aa; putative isocitrate dehydrogenase [NADP] 4167417 icd 3287902 icd Bacteroides fragilis NCTC 9343 putative isocitrate dehydrogenase [NADP] YP_213144.1 4166227 R 272559 CDS YP_213145.1 60683001 3289047 complement(4167580..4169823) 1 NC_003228.3 Similar to Leptospira interrogans aconitate hydratase Acn or LB327 SWALL:Q8EX87 (EMBL:AE011619) (757 aa) fasta scores: E(): 4.8e-186, 64.79% id in 747 aa, and to Gracilaria verrucosa aconitate hydratase, mitochondrial precursor SWALL:ACON_GRAVE (SWALL:P49609) (779 aa) fasta scores: E(): 2.8e-172, 60.29% id in 743 aa. Note: The majority of the database matches are to eukaryotic entries; putative aconitase 4169823 acn 3289047 acn Bacteroides fragilis NCTC 9343 putative aconitase YP_213145.1 4167580 R 272559 CDS YP_213146.1 60683002 3286027 4170082..4171986 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative helicase BT2073 SWALL:Q8A613 (EMBL:AE016934) (652 aa) fasta scores: E(): 1.5e-202, 81.61% id in 620 aa, and to Mus musculus DNA-binding protein SmuBP-2 IgHmbP2 or SmbP2 or SmbP-2 SWALL:SMB2_MOUSE (SWALL:P40694) (993 aa) fasta scores: E(): 4.2e-44, 32.09% id in 648 aa; putative DNA-binding protein 4171986 3286027 BF9343_3451 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_213146.1 4170082 D 272559 CDS YP_213147.1 60683003 3286010 complement(4172099..4174018) 1 NC_003228.3 Very low similarity only to Bacteroides thetaiotaomicron hypothetical protein BT0720 SWALL:Q8A9U5 (EMBL:AE016928) (655 aa) fasta scores: E(): 1.1e-21, 30.78% id in 692 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2828 SWALL:Q8A3X6 (EMBL:AE016937) (670 aa) fasta scores: E(): 1.9e-09, 29.05% id in 678 aa; putative lipoprotein 4174018 3286010 BF9343_3452 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213147.1 4172099 R 272559 CDS YP_213148.1 60683004 3285969 complement(4174221..4175309) 1 NC_003228.3 Similar to Aster Yellows phytoplasma ketol acid reductoisomerase mitochondrial SWALL:Q847R5 (EMBL:AY191285) (344 aa) fasta scores: E(): 5.9e-87, 65.59% id in 343 aa, and to Bacillus subtilis ketol-acid reductoisomerase IlvC or BSU28290 SWALL:ILVC_BACSU (SWALL:P37253) (342 aa) fasta scores: E(): 1.2e-29, 38.08% id in 323 aa; putative reductoisomerase 4175309 3285969 BF9343_3453 Bacteroides fragilis NCTC 9343 putative reductoisomerase YP_213148.1 4174221 R 272559 CDS YP_213149.1 60683005 3285977 complement(4175346..4175930) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0646 SWALL:Q8AA19 (EMBL:AE016928) (190 aa) fasta scores: E(): 5.1e-07, 24.25% id in 202 aa, and to Porphyromonas gingivalis W83 hypothetical protein PGg1823 SWALL:AAQ66820 (EMBL:AE017178) (217 aa) fasta scores: E(): 5.9e-05, 29.04% id in 210 aa; hypothetical protein 4175930 3285977 BF9343_3454 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213149.1 4175346 R 272559 CDS YP_213150.1 60683006 3285914 complement(4175948..4176691) 1 NC_003228.3 Similar to Clostridium acetobutylicum acyl-ACP thioesterase CAC3591 SWALL:Q97D89 (EMBL:AE007855) (248 aa) fasta scores: E(): 1.7e-14, 24.8% id in 250 aa, and to Iris germanica acyl-ACP thioesterase FatB1 SWALL:Q9FQY1 (EMBL:AF213476) (427 aa) fasta scores: E(): 3.4e-09, 27.96% id in 211 aa; putative acyl-ACP thioesterase 4176691 3285914 BF9343_3455 Bacteroides fragilis NCTC 9343 putative acyl-ACP thioesterase YP_213150.1 4175948 R 272559 CDS YP_213151.1 60683007 3286000 complement(4176692..4177252) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron acetohydroxyacid synthase small subunit BT2076 SWALL:Q8A610 (EMBL:AE016934) (187 aa) fasta scores: E(): 4.9e-59, 89.73% id in 185 aa, and to Bacillus subtilis acetolactate synthase small subunit IlvN or BSU28300 SWALL:ILVH_BACSU (SWALL:P37252) (174 aa) fasta scores: E(): 1.2e-08, 31.92% id in 166 aa; putative acetohydroxyacid synthase small subunit 4177252 3286000 BF9343_3456 Bacteroides fragilis NCTC 9343 putative acetohydroxyacid synthase small subunit YP_213151.1 4176692 R 272559 CDS YP_213152.1 60683008 3288995 complement(4177266..4178963) 1 NC_003228.3 Similar to Bacillus subtilis acetolactate synthase large subunit IlvB or BSU28310 SWALL:ILVB_BACSU (SWALL:P37251) (573 aa) fasta scores: E(): 3.8e-90, 43.47% id in 559 aa, and to Methanosarcina mazei acetolactate synthase large subunit MM0670 SWALL:Q8PZ24 (EMBL:AE013291) (564 aa) fasta scores: E(): 2.7e-95, 46.27% id in 564 aa; putative acetolactate synthase large subunit 4178963 ilvB 3288995 ilvB Bacteroides fragilis NCTC 9343 putative acetolactate synthase large subunit YP_213152.1 4177266 R 272559 CDS YP_213153.1 60683009 3289185 complement(4179019..4180821) 1 NC_003228.3 Similar to Escherichia coli dihydroxy-acid dehydratase IlvD or B3771 SWALL:ILVD_ECOLI (SWALL:P05791) (615 aa) fasta scores: E(): 2.3e-146, 65.51% id in 609 aa, and to Vibrio parahaemolyticus dihydroxy-acid dehydratase IlvD or VP3061 SWALL:ILVD_VIBPA (SWALL:Q87KB6) (613 aa) fasta scores: E(): 2.1e-151, 66.44% id in 605 aa; putative dihydroxy-acid dehydratase 4180821 ilvD 3289185 ilvD Bacteroides fragilis NCTC 9343 putative dihydroxy-acid dehydratase YP_213153.1 4179019 R 272559 CDS YP_213154.1 60683010 3285927 complement(4181145..4182323) 1 NC_003228.3 hypothetical protein 4182323 3285927 BF9343_3459 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213154.1 4181145 R 272559 CDS YP_213155.1 60683011 3285897 complement(4182710..4184824) 1 NC_003228.3 No significant database matches. Note: Also similar to BF3554 (717 aa) fasta scores E(): 2.8e-72,33.924% identity in 734 aa overlap and to BF3555 (722 aa) fasta scores E(): 1.6e-54, 35.488% identity in 727 aa overlap; hypothetical protein 4184824 3285897 BF9343_3460 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213155.1 4182710 R 272559 CDS YP_213156.1 60683012 3285925 complement(4184802..4186952) 1 NC_003228.3 No significant database matches. Note: Also similar to BF3553 (705 aa) fasta scores E(): 1.7e-74, 34.060% identity in 734 aa overlap and to BF3555 (722 aa) fasta scores E(): 8.2e-53, 36.957% identity in 736 aa overlap; putative lipoprotein 4186952 3285925 BF9343_3461 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213156.1 4184802 R 272559 CDS YP_213157.1 60683013 3285860 complement(4186971..4189136) 1 NC_003228.3 No significant database matches. Note: Also similar to BF3553 (705 aa) fasta scores E(): 1.2e-54, 35.351% identity in 727 aa overlap and to BF3554 (717 aa) fasta scores E(): 2.6e-51, 37.228% identity in 736 aa overlap; putative lipoprotein 4189136 3285860 BF9343_3462 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213157.1 4186971 R 272559 CDS YP_213158.1 60683014 3285898 complement(4189133..4190470) 1 NC_003228.3 hypothetical protein 4190470 3285898 BF9343_3463 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213158.1 4189133 R 272559 CDS YP_213159.1 60683015 3285871 complement(4190472..4191347) 1 NC_003228.3 Very low similarity to Bacteroides thetaiotaomicron transcriptional regulator BT3052 SWALL:Q8A3A2 (EMBL:AE016938) (316 aa) fasta scores: E(): 4.3e-16, 28.34% id in 254 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT3058 SWALL:Q8A396 (EMBL:AE016938) (280 aa) fasta scores: E(): 1.4e-13, 30.92% id in 249 aa; putative AraC-family regulatory protein 4191347 3285871 BF9343_3464 Bacteroides fragilis NCTC 9343 putative AraC-family regulatory protein YP_213159.1 4190472 R 272559 CDS YP_213160.1 60683016 3285892 4191648..4192238 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type or PG1315 SWALL:AAQ66387 (EMBL:AE017176) (190 aa) fasta scores: E(): 2.1e-26, 44.84% id in 194 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri FKBP-type peptidyl-prolyl cis-trans isomerase SlyD or B3349 or C4123 or Z4707 or ECS4200 or SF3367 or S4395 SWALL:SLYD_ECOLI (SWALL:P30856) (196 aa) fasta scores: E(): 5.2e-09, 31.4% id in 207 aa; putative isomerase 4192238 3285892 BF9343_3465 Bacteroides fragilis NCTC 9343 putative isomerase YP_213160.1 4191648 D 272559 CDS YP_213161.1 60683017 3286409 complement(4192330..4192848) 1 NC_003228.3 putative lipoprotein 4192848 3286409 BF9343_3466 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213161.1 4192330 R 272559 CDS YP_213162.1 60683018 3285930 complement(4192957..4194243) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0909 SWALL:AAQ66048 (EMBL:AE017175) (433 aa) fasta scores: E(): 1.8e-91, 55.55% id in 432 aa, and to Escherichia coli hypothetical protein YhaM or B3108/B3109 SWALL:YHAM_ECOLI (SWALL:P42626) (437 aa) fasta scores: E(): 2.7e-64, 43.52% id in 425 aa; hypothetical protein 4194243 3285930 BF9343_3467 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213162.1 4192957 R 272559 CDS YP_213163.1 60683019 3286123 4194419..4195546 1 NC_003228.3 Low similarity to Bacteroides thetaiotaomicron conserved hypothetical protein BT2112 SWALL:Q8A5X4 (EMBL:AE016934) (345 aa) fasta scores: E(): 5e-35, 42.96% id in 384 aa, and to Streptomyces avermitilis hypothetical protein SAV2109 SWALL:Q82LA2 (EMBL:AP005029) (464 aa) fasta scores: E(): 1.2e-17, 32.98% id in 379 aa; hypothetical protein 4195546 3286123 BF9343_3468 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213163.1 4194419 D 272559 CDS YP_213164.1 60683020 3285870 4195696..4196793 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2081 SWALL:Q8A605 (EMBL:AE016934) (361 aa) fasta scores: E(): 2e-73, 54.91% id in 366 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3745 SWALL:Q8A1C1 (EMBL:AE016942) (374 aa) fasta scores: E(): 3.5e-47, 45.4% id in 381 aa; hypothetical protein 4196793 3285870 BF9343_3469 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213164.1 4195696 D 272559 CDS YP_213165.1 60683021 3286160 4196804..4197589 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3744 SWALL:Q8A1C2 (EMBL:AE016942) (261 aa) fasta scores: E(): 1.1e-63, 62.12% id in 264 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2082 SWALL:Q8A604 (EMBL:AE016934) (261 aa) fasta scores: E(): 3.7e-61, 59.92% id in 262 aa; hypothetical protein 4197589 3286160 BF9343_3470 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213165.1 4196804 D 272559 CDS YP_213166.1 60683022 3286131 complement(4198107..4199978) 1 NC_003228.3 Similar in its C-terminal region to Bacteroides thetaiotaomicron hypothetical protein BT3743 SWALL:AAO78848 (EMBL:AE016942) (504 aa) fasta scores: E(): 1.9e-35, 34.69% id in 539 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3742 SWALL:AAO78847 (EMBL:AE016942) (505 aa) fasta scores: E(): 5.2e-26, 35.31% id in 504 aa; hypothetical protein 4199978 3286131 BF9343_3471 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213166.1 4198107 R 272559 CDS YP_213167.1 60683023 3286217 complement(4200590..4201528) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0169 SWALL:Q8ABE1 (EMBL:AE016926) (351 aa) fasta scores: E(): 2.7e-09, 29.34% id in 334 aa; putative exported phosphatase 4201528 3286217 BF9343_3472 Bacteroides fragilis NCTC 9343 putative exported phosphatase YP_213167.1 4200590 R 272559 CDS YP_213168.1 60683024 3286052 complement(4201607..4202530) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3023 SWALL:Q8A3D1 (EMBL:AE016938) (305 aa) fasta scores: E(): 7.5e-53, 47.35% id in 302 aa, and to Xanthomonas axonopodis phosphodiesterase-nucleotide pyrophosphatase XAC2824 SWALL:Q8PIS1 (EMBL:AE011923) (432 aa) fasta scores: E(): 5.8e-07, 20.84% id in 283 aa; hypothetical protein 4202530 3286052 BF9343_3473 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213168.1 4201607 R 272559 CDS YP_213169.1 60683025 3286423 complement(4202544..4205000) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein with conserved domains BT3030 SWALL:Q8A3C4 (EMBL:AE016938) (824 aa) fasta scores: E(): 4.3e-67, 40.72% id in 825 aa, and in its C-terminal region to Vibrio cholerae hypothetical protein VC0762 SWALL:Q9KTW8 (EMBL:AE004161) (386 aa) fasta scores: E(): 2.4e-05, 23.92% id in 372 aa; putative exported phosphoesterase protein 4205000 3286423 BF9343_3474 Bacteroides fragilis NCTC 9343 putative exported phosphoesterase protein YP_213169.1 4202544 R 272559 CDS YP_213170.1 60683026 3285967 complement(4205105..4206898) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron databse matches such as putative outer membrane protein, probably involved in nutrient binding BT0030 SWALL:Q8ABT0 (EMBL:AE016926) (609 aa) fasta scores: E(): 2e-24, 36.22% id in 610 aa, and hypothetical protein BT3045 SWALL:Q8A3A9 (EMBL:AE016938) (660 aa) fasta scores: E(): 4.1e-05, 22.97% id in 605 aa; hypothetical protein 4206898 3285967 BF9343_3475 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213170.1 4205105 R 272559 CDS YP_213171.1 60683027 3286251 complement(4206911..4210357) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database matches such as putative outer membrane protein, probably involved in nutrient binding BTt0754 SWALL:Q8A9R1 (EMBL:AE016929) (1138 aa) fasta scores: E(): 3.6e-131, 35.64% id in 1167 aa, and putative outer membrane protein, probably involved in nutrient binding BT1619 SWALL:Q8A7A6 (EMBL:AE016932) (1150 aa) fasta scores: E(): 1.6e-129, 35.18% id in 1171 aa; hypothetical protein 4210357 3286251 BF9343_3476 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213171.1 4206911 R 272559 CDS YP_213172.1 60683028 3285994 complement(4210518..4211543) 1 NC_003228.3 Similar to Bacteroides fragilis putative regulatory protein FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 4.2e-17, 25.74% id in 334 aa, and to Pseudomonas aeruginosa probable transmembrane sensor PA2388 SWALL:Q9I192 (EMBL:AE004665) (331 aa) fasta scores: E(): 2.3e-10, 25.14% id in 338 aa; putative anti sigma factor 4211543 3285994 BF9343_3477 Bacteroides fragilis NCTC 9343 putative anti sigma factor YP_213172.1 4210518 R 272559 CDS YP_213173.1 60683029 3286454 complement(4211617..4212189) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3993 SWALL:Q8A0M8 (EMBL:AE016943) (184 aa) fasta scores: E(): 1.3e-13, 36.95% id in 184 aa, and to Nitrosomonas europaea sigma factor, ECF subfamily NE1992 SWALL:Q82TB3 (EMBL:BX321863) (179 aa) fasta scores: E(): 1.5e-07, 26.01% id in 173 aa; putative RNA polymerase sigma factor 4212189 3286454 BF9343_3478 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_213173.1 4211617 R 272559 CDS YP_213174.1 60683030 3286450 complement(4213025..4214866) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database matches such as putative outer membrane protein, probably involved in nutrient binding BTt4038 SWALL:Q8A0I3 (EMBL:AE016943) (613 aa) fasta scores: E(): 1.4e-211, 83.55% id in 614 aa, and putative outer membrane protein, probably involved in nutrient binding BT0866 SWALL:Q8A9E9 (EMBL:AE016929) (632 aa) fasta scores: E(): 6e-36, 41.44% id in 637 aa; putative lipoprotein 4214866 3286450 BF9343_3479 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213174.1 4213025 R 272559 CDS YP_213175.1 60683031 3286287 complement(4214889..4218104) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron databse matches such as putative outer membrane protein, probably involved in nutrient binding BT4634 SWALL:Q89YU7 (EMBL:AE016946) (1129 aa) fasta scores: E(): 0, 56.59% id in 1016 aa, and putative outer membrane protein, probably involved in nutrient binding BT0867 SWALL:Q8A9E8 (EMBL:AE016929) (1070 aa) fasta scores: E(): 2e-206, 58.5% id in 1017 aa; hypothetical protein 4218104 3286287 BF9343_3480 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213175.1 4214889 R 272559 CDS YP_213176.1 60683032 3286107 complement(4218917..4220239) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative galactose oxidase precursor BT4632 SWALL:Q89YU9 (EMBL:AE016946) (444 aa) fasta scores: E(): 9.6e-69, 43.67% id in 435 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0441 SWALL:Q8AAM3 (EMBL:AE016927) (462 aa) fasta scores: E(): 7.1e-08, 25.28% id in 447 aa; hypothetical protein 4220239 3286107 BF9343_3481 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213176.1 4218917 R 272559 CDS YP_213177.1 60683033 3286324 complement(4220268..4222154) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database matches such as putative outer membrane protein, probably involved in nutrient binding BT4633 SWALL:Q89YU8 (EMBL:AE016946) (627 aa) fasta scores: E(): 1.1e-166, 64.05% id in 637 aa, and hypothetical protein BT2893 SWALL:Q8A3R1 (EMBL:AE016937) (624 aa) fasta scores: E(): 9.8e-43, 33.83% id in 662 aa; hypothetical protein 4222154 3286324 BF9343_3482 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213177.1 4220268 R 272559 CDS YP_213178.1 60683034 3286306 complement(4222184..4225660) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron databse matches such as putative outer membrane protein, probably involved in nutrient binding BT4634 SWALL:Q89YU7 (EMBL:AE016946) (1129 aa) fasta scores: E(): 0, 69.4% id in 1131 aa, and putative outer membrane protein, probably involved in nutrient binding BT3519 SWALL:Q8A1Y9 (EMBL:AE016941) (1151 aa) fasta scores: E(): 1.2e-129, 36.51% id in 1153 aa; hypothetical protein 4225660 3286306 BF9343_3483 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213178.1 4222184 R 272559 CDS YP_213179.1 60683035 3286455 complement(4225765..4226985) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative anti-sigma factor BT3278 SWALL:Q8A2M7 (EMBL:AE016939) (394 aa) fasta scores: E(): 4.4e-16, 26.28% id in 388 aa, and to Escherichia coli sensor/regulatory protein FecR or B4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 3.5e-06, 22.98% id in 248 aa; putative regulatory protein (possible anti-sigma factor) 4226985 3286455 BF9343_3484 Bacteroides fragilis NCTC 9343 putative regulatory protein (possible anti-sigma factor) YP_213179.1 4225765 R 272559 CDS YP_213180.1 60683036 3286434 complement(4227060..4227638) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT3517 SWALL:Q8A1Z1 (EMBL:AE016941) (190 aa) fasta scores: E(): 1.8e-21, 35.63% id in 188 aa, and to Streptomyces avermitilis putative RNA polymerase ECF-subfamily sigma factor Sig32 or SAV3888 SWALL:Q82GK9 (EMBL:AP005037) (232 aa) fasta scores: E(): 8.5e-07, 25.59% id in 168 aa, and to Porphyromonas gingivalis W83 RNA polymerase sigma-70 factor, ECF subfamily PG0162 SWALL:AAQ65402 (EMBL:AE017172) (193 aa) fasta scores: E(): 4.9e-05, 25.62% id in 199 aa; putative RNA polymerase sigma factor 4227638 3286434 BF9343_3485 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_213180.1 4227060 R 272559 CDS YP_213181.1 60683037 3289118 4227899..4228975 1 NC_003228.3 Similar to Escherichia coli chorismate synthase AroC or B2329 SWALL:AROC_ECOLI (SWALL:P12008) (360 aa) fasta scores: E(): 1.7e-61, 46.45% id in 353 aa, and to Synechocystis sp. chorismate synthase AroC or SLL1747 SWALL:AROC_SYNY3 (SWALL:P23353) (362 aa) fasta scores: E(): 2.1e-72, 54.1% id in 353 aa; putative chorismate synthase 4228975 aroC 3289118 aroC Bacteroides fragilis NCTC 9343 putative chorismate synthase YP_213181.1 4227899 D 272559 CDS YP_213182.1 60683038 3286134 4228988..4230352 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 peptidase, M20/M25/M40 family PG0561 SWALL:AAQ65750 (EMBL:AE017174) (451 aa) fasta scores: E(): 3.3e-131, 69.4% id in 451 aa, and to Bacillus halodurans hypothetical protein BH3875 SWALL:Q9K657 (EMBL:AP001520) (458 aa) fasta scores: E(): 1.3e-77, 44.19% id in 448 aa; putative peptidase 4230352 3286134 BF9343_3487 Bacteroides fragilis NCTC 9343 putative peptidase YP_213182.1 4228988 D 272559 CDS YP_213183.1 60683039 3286458 complement(4230437..4231492) 1 NC_003228.3 Similar to Gloeobacter violaceus PCC 7421 GLL0368 protein SWALL:BAC88309 (EMBL:AP006569) (357 aa) fasta scores: E(): 5.6e-74, 54.65% id in 344 aa, and to Bacteroides thetaiotaomicron choloylglycine hydrolase BT1259 SWALL:Q8A8A8 (EMBL:AE016931) (326 aa) fasta scores: E(): 1.6e-71, 54.51% id in 321 aa; putative exported hydrolase 4231492 3286458 BF9343_3488 Bacteroides fragilis NCTC 9343 putative exported hydrolase YP_213183.1 4230437 R 272559 CDS YP_213184.1 60683040 3286457 complement(4232326..4233048) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative integral membrane protein BT0786 SWALL:Q8A9M9 (EMBL:AE016929) (240 aa) fasta scores: E(): 1e-55, 58.33% id in 240 aa, and to Streptomyces coelicolor putative integral membrane protein SCO7203 or SC2H12.02 SWALL:Q9K482 (EMBL:AL939130) (258 aa) fasta scores: E(): 1.6e-20, 36.82% id in 239 aa; hypothetical protein 4233048 3286457 BF9343_3490 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213184.1 4232326 R 272559 CDS YP_213185.1 60683041 3286461 complement(4233138..4235288) 1 NC_003228.3 Similar to Ralstonia solanacearum probable DNA topoisomerase III protein TopB or RSC0066 or RS02245 SWALL:Q8Y3B4 (EMBL:AL646057) (877 aa) fasta scores: E(): 3.2e-70, 38.64% id in 621 aa, and to Escherichia coli DNA topoisomerase III TopB or B1763 SWALL:TOP3_ECOLI (SWALL:P14294) (653 aa) fasta scores: E(): 1.7e-50, 32.49% id in 674 aa; putative DNA topoisomerase 4235288 3286461 BF9343_3491 Bacteroides fragilis NCTC 9343 putative DNA topoisomerase YP_213185.1 4233138 R 272559 CDS YP_213186.1 60683042 3286459 4235415..4236815 1 NC_003228.3 Similar to Streptomyces coelicolor putative glycosyl hydrolase SCO0279 or SCF85.07 SWALL:Q9S2D4 (EMBL:AL939104) (423 aa) fasta scores: E(): 1.4e-28, 30.74% id in 374 aa, and to Homo sapiens tissue alpha-L-fucosidase precursor FucA1 SWALL:FUCO_HUMAN (SWALL:P04066) (461 aa) fasta scores: E(): 3.2e-23, 26.77% id in 478 aa; putative exporte hydrolase 4236815 3286459 BF9343_3492 Bacteroides fragilis NCTC 9343 putative exporte hydrolase YP_213186.1 4235415 D 272559 CDS YP_213187.1 60683043 3289268 complement(4236922..4239069) 1 NC_003228.3 Similar to Porphyromonas gingivalis methylmalonyl-CoA mutase large subunit MutB or McmB or PG1657 SWALL:MUTB_PORGI (SWALL:Q59677) (715 aa) fasta scores: E(): 0, 82.09% id in 715 aa, and to Leptospira interrogans methylmalonyl-CoA mutase Mcm3 or LB274 SWALL:Q8EXD9 (EMBL:AE011614) (732 aa) fasta scores: E(): 1.9e-203, 77.74% id in 683 aa; putative methylmalonyl-CoA mutase large subunit 4239069 mutB 3289268 mutB Bacteroides fragilis NCTC 9343 putative methylmalonyl-CoA mutase large subunit YP_213187.1 4236922 R 272559 CDS YP_213188.1 60683044 3289261 complement(4239071..4240969) 1 NC_003228.3 Similar to Porphyromonas gingivalis methylmalonyl-CoA mutase small subunit MutA or McmA or PG1656 SWALL:MUTA_PORGI (SWALL:Q59676) (618 aa) fasta scores: E(): 9.8e-59, 59.01% id in 632 aa, and to Leptospira interrogans methylmalonyl-CoA mutase Mcm2 or LB273 SWALL:Q8EXE0 (EMBL:AE011614) (626 aa) fasta scores: E(): 9.1e-47, 39.44% id in 649 aa; putative methylmalonyl-CoA mutase small subunit 4240969 mutA 3289261 mutA Bacteroides fragilis NCTC 9343 putative methylmalonyl-CoA mutase small subunit YP_213188.1 4239071 R 272559 CDS YP_213189.1 60683045 3286460 4241218..4242882 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 potassium uptake protein TrkA, putative PG1411 SWALL:AAQ66468 (EMBL:AE017176) (561 aa) fasta scores: E(): 1.7e-114, 54.74% id in 559 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical membrane protein YidE or B3685 or Z5181 or ECS4625 or SF3778 or S3992 SWALL:YIDE_ECOLI (SWALL:P29211) (553 aa) fasta scores: E(): 2.6e-77, 40% id in 550 aa; putative cation transport related, membrane protein 4242882 3286460 BF9343_3495 Bacteroides fragilis NCTC 9343 putative cation transport related, membrane protein YP_213189.1 4241218 D 272559 CDS YP_213190.1 60683046 3286464 complement(4242970..4243689) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2093 SWALL:Q8A5Z3 (EMBL:AE016934) (211 aa) fasta scores: E(): 3.8e-76, 88.03% id in 209 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 cytidylate kinase FNV0680 SWALL:EAA23705 (EMBL:AABF01000094) (194 aa) fasta scores: E(): 5.9e-24, 37.24% id in 196 aa; hypothetical protein 4243689 3286464 BF9343_3496 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213190.1 4242970 R 272559 CDS YP_213191.1 60683047 3286462 4243765..4245117 1 NC_003228.3 Similar to Bacillus cereus Na+ driven multidrug efflux pump BC1615 SWALL:Q81FH2 (EMBL:AE017003) (451 aa) fasta scores: E(): 2.8e-46, 31.22% id in 426 aa, and to Enterococcus faecalis mate efflux family protein EF0660 SWALL:Q838B2 (EMBL:AE016948) (446 aa) fasta scores: E(): 2.1e-40, 32.05% id in 443 aa; putative cation transport related membrane protein 4245117 3286462 BF9343_3497 Bacteroides fragilis NCTC 9343 putative cation transport related membrane protein YP_213191.1 4243765 D 272559 CDS YP_213192.1 60683048 3286463 4245158..4245727 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative cAMP-binding domain, regulatory protein BT2102 SWALL:Q8A5Y4 (EMBL:AE016934) (187 aa) fasta scores: E(): 1.6e-47, 69.02% id in 184 aa, and to Clostridium acetobutylicum predicted cAMP-binding domain, regulatory protein, diverged CAC3336 SWALL:Q97DY4 (EMBL:AE007830) (199 aa) fasta scores: E(): 1.7e-07, 27.62% id in 181 aa; hypothetical protein 4245727 3286463 BF9343_3498 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213192.1 4245158 D 272559 CDS YP_213193.1 60683049 3286468 4246012..4246503 1 NC_003228.3 Significant similarity only to Bacteroides thetaiotaomicron conserved hypothetical protein BT3610 SWALL:Q8A1P9 (EMBL:AE016941) (156 aa) fasta scores: E(): 9.1e-16, 35.89% id in 156 aa; hypothetical protein 4246503 3286468 BF9343_3499 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213193.1 4246012 D 272559 CDS YP_213194.1 60683050 3286466 complement(4246721..4248931) 1 NC_003228.3 Similar to Pseudomonas aeruginosa hypothetical protein PA3339 SWALL:Q9HYQ6 (EMBL:AE004756) (728 aa) fasta scores: E(): 3.8e-41, 27.45% id in 765 aa, and to Shewanella oneidensis conserved hypothetical protein SO0428 SWALL:Q8EJN5 (EMBL:AE015491) (736 aa) fasta scores: E(): 6.8e-38, 25.49% id in 765 aa; hypothetical protein 4248931 3286466 BF9343_3500 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213194.1 4246721 R 272559 CDS YP_213195.1 60683051 3286467 complement(4249120..4250481) 1 NC_003228.3 Similar to Bacteroides fragilis putative Na+-driven multidrug efflux pump BexB SWALL:AAQ92937 (EMBL:AY375536) (454 aa) fasta scores: E(): 2e-93, 54.79% id in 438 aa, and to Clostridium tetani Na+ driven multidrug efflux pump MviN or CTC00603 SWALL:Q897W8 (EMBL:AE015938) (456 aa) fasta scores: E(): 8.3e-79, 47.55% id in 429 aa; putative cation transport related membrane protein 4250481 3286467 BF9343_3501 Bacteroides fragilis NCTC 9343 putative cation transport related membrane protein YP_213195.1 4249120 R 272559 CDS YP_213196.1 60683052 3289196 4250619..4252346 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 lysyl-tRNA synthetase, heat inducible LysU or B4129 or Z5732 or ECS5111 SWALL:SYK2_ECOLI (SWALL:P14825) (504 aa) fasta scores: E(): 1.9e-77, 47.59% id in 498 aa, and to Porphyromonas gingivalis W83 lysyl-tRNA synthetase LysS or PG1370 SWALL:AAQ66434 (EMBL:AE017176) (578 aa) fasta scores: E(): 4.7e-167, 72.02% id in 572 aa; putative lysyl-tRNA synthetase, heat inducible 4252346 lysU 3289196 lysU Bacteroides fragilis NCTC 9343 putative lysyl-tRNA synthetase, heat inducible YP_213196.1 4250619 D 272559 CDS YP_213197.1 60683053 3286465 4252446..4253441 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 glycerol-3-phosphate dehydrogenase GpsA or PG1369 SWALL:AAQ66433 (EMBL:AE017176) (334 aa) fasta scores: E(): 4.4e-74, 58.48% id in 330 aa, and to Bacillus subtilis glycerol-3-phosphate dehydrogenase [NAD(P)+] GpsA or GlyC or BSU22830 SWALL:GPDA_BACSU (SWALL:P46919) (345 aa) fasta scores: E(): 2.1e-25, 31.38% id in 325 aa; putative phospholipids biosynthesis 4253441 3286465 BF9343_3503 Bacteroides fragilis NCTC 9343 putative phospholipids biosynthesis YP_213197.1 4252446 D 272559 CDS YP_213198.1 60683054 3287829 4253489..4254826 1 NC_003228.3 Similar to Bacillus stearothermophilus glucose-6-phosphate isomerase A PgiA SWALL:G6PA_BACST (SWALL:P13375) (449 aa) fasta scores: E(): 2.1e-89, 54.26% id in 446 aa, and to Porphyromonas gingivalis W83 glucose-6-phosphate isomerase Pgi or PG1368 SWALL:AAQ66432 (EMBL:AE017176) (445 aa) fasta scores: E(): 1.3e-114, 68.76% id in 429 aa; putative glucose-6-phosphate isomerase 4254826 pgiA 3287829 pgiA Bacteroides fragilis NCTC 9343 putative glucose-6-phosphate isomerase YP_213198.1 4253489 D 272559 CDS YP_213199.1 60683055 3286470 complement(4254911..4255417) 1 NC_003228.3 putative lipoprotein 4255417 3286470 BF9343_3505 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213199.1 4254911 R 272559 CDS YP_213200.1 60683056 3286471 4255581..4256243 1 NC_003228.3 Similar to Escherichia coli protein YfbT or B2293 SWALL:YFBT_ECOLI (SWALL:P77625) (216 aa) fasta scores: E(): 1.4e-13, 34.78% id in 207 aa, and to Lactococcus lactis beta-phosphoglucomutase PgmB or LL0429 SWALL:PGMB_LACLA (SWALL:P71447) (221 aa) fasta scores: E(): 5.1e-07, 23.85% id in 218 aa; putative hydrolase 4256243 3286471 BF9343_3506 Bacteroides fragilis NCTC 9343 putative hydrolase YP_213200.1 4255581 D 272559 CDS YP_213201.1 60683057 3289102 4256590..4257627 1 NC_003228.3 Similar to Escherichia coli aspartate--ammonia ligase AsnA or B3744 SWALL:ASNA_ECOLI (SWALL:P00963) (330 aa) fasta scores: E(): 4.5e-56, 48.3% id in 325 aa, and to Streptococcus pneumoniae aspartate--ammonia ligase AsnA or SP1970 SWALL:ASNA_STRPN (SWALL:Q97NQ0) (330 aa) fasta scores: E(): 1.7e-63, 53.29% id in 319 aa; putative aspartate--ammonia ligase 4257627 asnA 3289102 asnA Bacteroides fragilis NCTC 9343 putative aspartate--ammonia ligase YP_213201.1 4256590 D 272559 CDS YP_213202.1 60683058 3285513 4257634..4258296 1 NC_003228.3 Similar to Escherichia coli uracil-DNA glycosylase Ung or B2580 SWALL:UNG_ECOLI (SWALL:P12295) (228 aa) fasta scores: E(): 8.3e-44, 53.91% id in 217 aa, and to Pseudomonas aeruginosa uracil-DNA glycosylase Ung or PA0750 SWALL:UNG_PSEAE (SWALL:Q9I5H9) (231 aa) fasta scores: E(): 5.1e-53, 60.27% id in 219 aa; putative uracil-DNA glycosylase 4258296 ung 3285513 ung Bacteroides fragilis NCTC 9343 putative uracil-DNA glycosylase YP_213202.1 4257634 D 272559 CDS YP_213203.1 60683059 3286469 complement(4258400..4261138) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2133 SWALL:Q8A5V3 (EMBL:AE016934) (902 aa) fasta scores: E(): 0, 72.56% id in 915 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1405 SWALL:AAQ66463 (EMBL:AE017176) (951 aa) fasta scores: E(): 8.3e-99, 40.78% id in 912 aa; hypothetical protein 4261138 3286469 BF9343_3509 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213203.1 4258400 R 272559 CDS YP_213204.1 60683060 3286473 complement(4261230..4261766) 1 NC_003228.3 Only significant similarities to Bacteroides thetaiotaomicron putative HD superfamily hydrolase BT2134 SWALL:Q8A5V2 (EMBL:AE016934) (178 aa) fasta scores: E(): 1.6e-52, 70.22% id in 178 aa, and to Porphyromonas gingivalis W83 HDIG domain protein PG0651 SWALL:AAQ65830 (EMBL:AE017174) (183 aa) fasta scores: E(): 4.9e-37, 54.8% id in 177 aa; hypothetical protein 4261766 3286473 BF9343_3510 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213204.1 4261230 R 272559 CDS YP_213205.1 60683061 3286474 4262202..4264508 1 NC_003228.3 Similar to Alteromonas sp. beta-N-acetylhexosaminidase Hex86 SWALL:Q8VUM1 (EMBL:AB067646) (761 aa) fasta scores: E(): 3.2e-39, 32.14% id in 784 aa, and to Porphyromonas gingivalis beta-hexosaminidase precursor NahA or PG0043 SWALL:HEXA_PORGI (SWALL:P49008) (777 aa) fasta scores: E(): 6.4e-32, 36.29% id in 744 aa; putative glycosyl hydrolase lipoprotein 4264508 3286474 BF9343_3511 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase lipoprotein YP_213205.1 4262202 D 272559 CDS YP_213206.1 60683062 3286472 4264607..4264906 1 NC_003228.3 hypothetical protein 4264906 3286472 BF9343_3512 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213206.1 4264607 D 272559 CDS YP_213207.1 60683063 3286476 complement(4264922..4265377) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative acetyltransferase, BT1464 SWALL:Q8A7R0 (EMBL:AE016931) (152 aa) fasta scores: E(): 1.4e-46, 68.24% id in 148 aa, and to Lactococcus lactis unknown protein YuiD or LL2008 SWALL:Q9CE40 (EMBL:AE006430) (152 aa) fasta scores: E(): 2e-33, 52.31% id in 151 aa; putative acetyltransferase 4265377 3286476 BF9343_3513 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_213207.1 4264922 R 272559 CDS YP_213208.1 60683064 3286477 complement(4265395..4266312) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 transporter, putative PG1734 SWALL:AAQ66741 (EMBL:AE017178) (313 aa) fasta scores: E(): 2.4e-46, 44.7% id in 302 aa, and to Bacillus subtilis putative transporter YocS SWALL:O34524 (EMBL:AF027868) (321 aa) fasta scores: E(): 1.1e-06, 25.31% id in 320 aa; hypothetical protein 4266312 3286477 BF9343_3514 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213208.1 4265395 R 272559 CDS YP_213209.1 60683065 3286475 4266420..4267664 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 N-acetylmuramoyl-L-alanine amidase, family 3 PG1048 SWALL:AAQ66164 (EMBL:AE017175) (396 aa) fasta scores: E(): 2.9e-50, 41.75% id in 400 aa, and to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase precursor AmiA or B2435 SWALL:AMIA_ECOLI (SWALL:P36548) (289 aa) fasta scores: E(): 4e-19, 37.16% id in 226 aa; putative exported N-acetylmuramoyl-L-alanine amidase 4267664 3286475 BF9343_3515 Bacteroides fragilis NCTC 9343 putative exported N-acetylmuramoyl-L-alanine amidase YP_213209.1 4266420 D 272559 CDS YP_213210.1 60683066 3286483 4267684..4268577 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, with a conserved domain BT2142 SWALL:Q8A5U6 (EMBL:AE016934) (297 aa) fasta scores: E(): 2.5e-86, 80.47% id in 297 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1049 SWALL:AAQ66165 (EMBL:AE017175) (292 aa) fasta scores: E(): 2e-28, 31.61% id in 291 aa; hypothetical protein 4268577 3286483 BF9343_3516 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213210.1 4267684 D 272559 CDS YP_213211.1 60683067 3285160 4268926..4270356 1 NC_003228.3 Similar to Escherichia coli chromosomal replication initiator protein DnaA or B3702 SWALL:DNAA_ECOLI (SWALL:P03004) (467 aa) fasta scores: E(): 1.6e-51, 33.61% id in 467 aa, and to Porphyromonas gingivalis W83 chromosomal replication initiator protein DnaA or PG0001 SWALL:AAQ65259 (EMBL:AE017172) (473 aa) fasta scores: E(): 2.2e-78, 46.46% id in 467 aa; putative chromosomal replication initiator protein 4270356 dnaA 3285160 dnaA Bacteroides fragilis NCTC 9343 putative chromosomal replication initiator protein YP_213211.1 4268926 D 272559 CDS YP_213212.1 60683068 3286484 complement(4270444..4271187) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative oxidoreductase BTt2144 SWALL:Q8A5U4 (EMBL:AE016934) (245 aa) fasta scores: E(): 7.2e-85, 85.71% id in 245 aa, and to Bacillus subtilis nitro/flavin reductase NfrA or NfrA1 or IPA-43D or BSU38110 SWALL:NFRA_BACSU (SWALL:P39605) (249 aa) fasta scores: E(): 3.1e-15, 29.55% id in 203 aa; putative oxidase 4271187 3286484 BF9343_3518 Bacteroides fragilis NCTC 9343 putative oxidase YP_213212.1 4270444 R 272559 CDS YP_213213.1 60683069 3286481 4271367..4274015 1 NC_003228.3 Similar to Halobacterium sp. ribonucleoside reductase large chain NrdB2 or VNG1644G SWALL:Q9HPG8 (EMBL:AE005073) (1051 aa) fasta scores: E(): 5.1e-24, 25% id in 992 aa, and to Neurospora crassa ribonucleoside-diphosphate reductase large chain Rnr-1 or Un-24 or B2A19.30 SWALL:RIR1_NEUCR (SWALL:Q9UW15) (929 aa) fasta scores: E(): 1.7e-13, 24% id in 679 aa; putative ribonucleoside reductase 4274015 3286481 BF9343_3519 Bacteroides fragilis NCTC 9343 putative ribonucleoside reductase YP_213213.1 4271367 D 272559 CDS YP_213214.1 60683070 3286487 4274213..4276915 1 NC_003228.3 Full length similarity to Bacteroides thetaiotaomicron 4-alpha-glucanotransferase BT2146 SWALL:Q8A5U2 (EMBL:AE016934) (893 aa) fasta scores: E(): 0, 78.8% id in 901 aa, and simlar in parts to to Porphyromonas gingivalis W83 4-alpha-glucanotransferase MalQ or PG0767 SWALL:AAQ65928 (EMBL:AE017174) (658 aa) fasta scores: E(): 7.3e-120, 45.6% id in 660 aa, and to Chlamydia pneumoniae 4-alpha-glucanotransferase MalQ or CPN0326 or CP0431 or CPB0336 SWALL:MALQ_CHLPN (SWALL:Q9Z8L2) (526 aa) fasta scores: E(): 3.5e-36, 33.02% id in 324 aa; putative alpha-glucanotransferase 4276915 3286487 BF9343_3520 Bacteroides fragilis NCTC 9343 putative alpha-glucanotransferase YP_213214.1 4274213 D 272559 CDS YP_213215.1 60683071 3286478 4276970..4278076 1 NC_003228.3 Similar to Clostridium acetobutylicum O-actetyl transferase related protein CAC3042 SWALL:Q97ER6 (EMBL:AE007801) (337 aa) fasta scores: E(): 4.7e-14, 23.64% id in 351 aa, and to Xylella fastidiosa GumF protein XF2365 SWALL:Q9PAY0 (EMBL:AE004046) (363 aa) fasta scores: E(): 6.4e-13, 24.17% id in 364 aa; putative acetyltransferase membrane protein 4278076 3286478 BF9343_3521 Bacteroides fragilis NCTC 9343 putative acetyltransferase membrane protein YP_213215.1 4276970 D 272559 CDS YP_213216.1 60683072 3286486 4278127..4278495 1 NC_003228.3 Similar to Staphylococcus aureus dihydroneopterin aldolase FolB SWALL:FOLB_STAAU (SWALL:P56740) (121 aa) fasta scores: E(): 3.4e-12, 37.39% id in 115 aa, and to Streptococcus pyogenes, and Streptococcus pyogenes dihydroneopterin aldolase FolB or FolQ or SPY1099 or SPYM18_1061 SWALL:FOLB_STRPY (SWALL:O33725) (119 aa) fasta scores: E(): 6.4e-10, 32.75% id in 116 aa; putative dihydroneopterin aldolase 4278495 3286486 BF9343_3522 Bacteroides fragilis NCTC 9343 putative dihydroneopterin aldolase YP_213216.1 4278127 D 272559 CDS YP_213217.1 60683073 3286490 4278519..4279940 1 NC_003228.3 No significant database matches to the full extenet of the CDS; hypothetical protein 4279940 3286490 BF9343_3523 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213217.1 4278519 D 272559 CDS YP_213218.1 60683074 3289218 complement(4280505..4281023) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri methylglyoxal synthase MgsA or B0963 or Z1314 or ECS1047 or SF0965 or S1031 SWALL:MGSA_ECOLI (SWALL:P37066) (152 aa) fasta scores: E(): 1.2e-18, 47.58% id in 145 aa, and to Coxiella burnetii methylglyoxal synthase MgsA or CBU0853 SWALL:Q83D86 (EMBL:AE016962) (143 aa) fasta scores: E(): 1.6e-24, 49.66% id in 147 aa; putative methylglyoxal synthase 4281023 mgsA 3289218 mgsA Bacteroides fragilis NCTC 9343 putative methylglyoxal synthase YP_213218.1 4280505 R 272559 CDS YP_213219.1 60683075 3286485 complement(4281028..4282059) 1 NC_003228.3 Similar to Chlorobium tepidum glycosyl transferase CT0536 SWALL:Q8KEZ6 (EMBL:AE012828) (344 aa) fasta scores: E(): 1.2e-35, 38.02% id in 334 aa, and to Myxococcus xanthus O-antigen biosynthesis protein RfbC SWALL:RFBC_MYXXA (SWALL:Q50864) (1275 aa) fasta scores: E(): 3.4e-07, 24.13% id in 348 aa; putative glycosyl transferase 4282059 3286485 BF9343_3525 Bacteroides fragilis NCTC 9343 putative glycosyl transferase YP_213219.1 4281028 R 272559 CDS YP_213220.1 60683076 3286489 complement(4282052..4282948) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 acyltransferase, HtrB/MsbB family PG2222 SWALL:AAQ67162 (EMBL:AE017179) (305 aa) fasta scores: E(): 6.5e-33, 34.64% id in 306 aa, and to Escherichia coli, and Escherichia coli O157:H7 lipid a biosynthesis lauroyl acyltransferase HtrB or WaaM or B1054 or Z1690 or ECS1432 SWALL:HTRB_ECOLI (SWALL:P24187) (306 aa) fasta scores: E(): 2.8e-06, 22.71% id in 295 aa; putative lipd A biosynthesis related exported protein 4282948 3286489 BF9343_3526 Bacteroides fragilis NCTC 9343 putative lipd A biosynthesis related exported protein YP_213220.1 4282052 R 272559 CDS YP_213221.1 60683077 3286493 complement(4282951..4284270) 1 NC_003228.3 Similar to Staphylococcus aureus hypothetical protein SAV1576 or SA1405 SWALL:Q99TS0 (EMBL:AP003362) (448 aa) fasta scores: E(): 4.3e-56, 38.33% id in 433 aa, and to Bacillus subtilis hypothetical protein YqeV or BSU25430 SWALL:YQEV_BACSU (SWALL:P54462) (451 aa) fasta scores: E(): 5.7e-55, 39.1% id in 422 aa; hypothetical protein 4284270 3286493 BF9343_3527 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213221.1 4282951 R 272559 CDS YP_213222.1 60683078 3286488 4284699..4286372 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical protein SWALL:Q8VU15 (EMBL:AF285774) (552 aa) fasta scores: E(): 6.7e-105, 48% id in 550 aa, and to Aquifex aeolicus long-chain-fatty-acid CoA ligase FadD or AQ_999 SWALL:O67119 (EMBL:AE000717) (823 aa) fasta scores: E(): 4.6e-37, 31.19% id in 529 aa, and to Escherichia coli, and Escherichia coli O6 long-chain-fatty-acid--CoA ligase FadD or OldD or B1805 or C2209 SWALL:LCFA_ECOLI (SWALL:P29212) (561 aa) fasta scores: E(): 5.9e-14, 27.76% id in 497 aa; putative long-chain-fatty-acid--CoA ligase 4286372 3286488 BF9343_3528 Bacteroides fragilis NCTC 9343 putative long-chain-fatty-acid--CoA ligase YP_213222.1 4284699 D 272559 CDS YP_213223.1 60683079 3286492 4286531..4286749 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2155 SWALL:Q8A5T3 (EMBL:AE016935) (73 aa) fasta scores: E(): 2e-12, 79.16% id in 72 aa; hypothetical protein 4286749 3286492 BF9343_3529 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213223.1 4286531 D 272559 CDS YP_213224.1 60683080 3288879 complement(4287072..4287515) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L9 RplI or B4203 or C5294 or Z5812 or ECS5179 or SF4356 or S4628 SWALL:RL9_ECOLI (SWALL:P02418) (149 aa) fasta scores: E(): 2.5e-09, 35.52% id in 152 aa, and to Thermoanaerobacter tengcongensis 50S ribosomal protein L9 RplI or TTE2775 SWALL:RL9_THETN (SWALL:Q8R6M7) (147 aa) fasta scores: E(): 3.4e-14, 41.49% id in 147 aa; putative 50S ribosomal protein L9 4287515 rplI 3288879 rplI Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L9 YP_213224.1 4287072 R 272559 CDS YP_213225.1 60683081 3288084 complement(4287527..4287799) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhi, and Shigella flexneri 30s ribosomal protein s18 RpsR or B4202 or C5292 or Z5811 or ECS5178 or STY4749 or T4444 or SF4355 or A4627 SWALL:RS18_ECOLI (SWALL:P02374) (74 aa) fasta scores: E(): 4e-11, 54.41% id in 68 aa, and to Staphylococcus epidermidis 30S ribosomal protein S18 SE2370 SWALL:Q8CQP6 (EMBL:AE016752) (80 aa) fasta scores: E(): 1.4e-13, 60.29% id in 68 aa; putative 30S ribosomal protein S18 4287799 rpsR 3288084 rpsR Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S18 YP_213225.1 4287527 R 272559 CDS YP_213226.1 60683082 3288548 complement(4287802..4288146) 1 NC_003228.3 Similar to Escherichia coli 30S ribosomal protein S6 RpsF or B4200 SWALL:RS6_ECOLI (SWALL:P02358) (135 aa) fasta scores: E(): 3.9e-07, 36.84% id in 114 aa, and to Thermoanaerobacter tengcongensis 30S ribosomal protein S6 RpsF or TTE2781 SWALL:RS6_THETN (SWALL:Q8R6M1) (95 aa) fasta scores: E(): 2.2e-12, 44.68% id in 94 aa; putative 30S ribosomal protein S6 4288146 rpsF 3288548 rpsF Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S6 YP_213226.1 4287802 R 272559 CDS YP_213227.1 60683083 3286496 4288308..4288754 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron MarR family transcriptional regulator BT2164 SWALL:Q8A5S4 (EMBL:AE016935) (148 aa) fasta scores: E(): 2e-51, 93.24% id in 148 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulator SlyA or B1642 or Z2657 or ECS2351 or SF1669 or S1801 SWALL:SLYA_ECOLI (SWALL:P55740) (146 aa) fasta scores: E(): 0.00013, 30.76% id in 117 aa; putative MarR-family regulatory protein 4288754 3286496 BF9343_3533 Bacteroides fragilis NCTC 9343 putative MarR-family regulatory protein YP_213227.1 4288308 D 272559 CDS YP_213228.1 60683084 3288515 complement(4289149..4289859) 1 NC_003228.3 Identical to the previously sequenced Bacteroides fragilis transcriptional regulatory protein RprY SWALL:RPRY_BACFR (SWALL:Q9AE24) (236 aa) fasta scores: E(): 1.1e-88, 99.57% id in 236 aa, and similar to Escherichia coli transcriptional regulatory protein PcoR SWALL:PCOR_ECOLI (SWALL:Q47456) (226 aa) fasta scores: E(): 2.3e-21, 35.13% id in 222 aa; two-component system, transcriptional regulatory protein 4289859 rprY 3288515 rprY Bacteroides fragilis NCTC 9343 two-component system, transcriptional regulatory protein YP_213228.1 4289149 R 272559 CDS YP_213229.1 60683085 3288785 complement(4289852..4291411) 1 NC_003228.3 Identical to the previously sequenced Bacteroides fragilis sensor protein RprX SWALL:RPRX_BACFR (SWALL:Q08408) (519 aa) fasta scores: E(): 1.4e-186, 97.49% id in 519 aa, and similar to Staphylococcus aureus alkaline phosphatase synthesis sensor protein PhoR or SAV1692 or SA1515 or MW1636 SWALL:Q99TH0 (EMBL:AP003363) (554 aa) fasta scores: E(): 6.6e-17, 23.56% id in 556 aa; two-component regulatory system, sensor kinase protein 4291411 rprX 3288785 rprX Bacteroides fragilis NCTC 9343 two-component regulatory system, sensor kinase protein YP_213229.1 4289852 R 272559 CDS YP_213230.1 60683086 3286491 complement(4291801..4293957) 1 NC_003228.3 Similar to Thermotoga maritima elongation factor G FusA or Fus or TM1503 SWALL:EFG_THEMA (SWALL:P38525) (692 aa) fasta scores: E(): 8.7e-49, 35.21% id in 710 aa, and to Porphyromonas gingivalis W83 translation elongation factor G, putative PG0933 SWALL:AAQ66067 (EMBL:AE017175) (719 aa) fasta scores: E(): 1.8e-186, 69.91% id in 718 aa; putative elongation factor G 4293957 3286491 BF9343_3536 Bacteroides fragilis NCTC 9343 putative elongation factor G YP_213230.1 4291801 R 272559 CDS YP_213231.1 60683087 3286495 complement(4294070..>4294354) 1 NC_003228.3 hypothetical protein >4294354 3286495 BF9343_3537 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213231.1 4294070 R 272559 CDS YP_213232.1 60683088 3286499 complement(4294377..>4294658) 1 NC_003228.3 hypothetical protein >4294658 3286499 BF9343_3538 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213232.1 4294377 R 272559 CDS YP_213233.1 60683089 3286494 4294793..4295926 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 oxygen-independent coproporphyrinogen III oxidase, putative PG0475 SWALL:AAQ65670 (EMBL:AE017173) (376 aa) fasta scores: E(): 5.7e-70, 48.8% id in 377 aa, and to Bacillus subtilis probable oxygen-independent coproporphyrinogen III oxidase HemN or BSU25500 SWALL:HEMN_BACSU (SWALL:P54304) (366 aa) fasta scores: E(): 3.1e-42, 35.4% id in 370 aa; putative oxygen-independent coproporphyrinogen III oxidase 4295926 3286494 BF9343_3539 Bacteroides fragilis NCTC 9343 putative oxygen-independent coproporphyrinogen III oxidase YP_213233.1 4294793 D 272559 CDS YP_213234.1 60683090 3286498 4295939..4296496 1 NC_003228.3 Similar to Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 2.2e-10, 30.89% id in 178 aa, and to Rhizobium loti RNA polymerase ECF-type sigma factor MLL8140 SWALL:Q983W6 (EMBL:AP003013) (208 aa) fasta scores: E(): 2.5e-07, 29.44% id in 180 aa, and to Bacillus subtilis RNA polymerase sigma factor SigZ or BSU26840 SWALL:SIGZ_BACSU (SWALL:O05409) (176 aa) fasta scores: E(): 0.0022, 24.54% id in 163 aa; putative RNA polymerase sigma factor 4296496 3286498 BF9343_3540 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_213234.1 4295939 D 272559 CDS YP_213235.1 60683091 3286503 4296635..4297072 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2170 SWALL:Q8A5R8 (EMBL:AE016935) (144 aa) fasta scores: E(): 1e-16, 43.79% id in 137 aa; hypothetical protein 4297072 3286503 BF9343_3541 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213235.1 4296635 D 272559 CDS YP_213236.1 60683092 3286497 4297084..4297962 1 NC_003228.3 Similar to Bacteroides fragilis FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 2.7e-18, 35.32% id in 201 aa, and to Pseudomonas putida transmembrane sensor, putative PP3555 SWALL:Q88H10 (EMBL:AE016787) (335 aa) fasta scores: E(): 2.4e-15, 34.66% id in 225 aa; putative transmembrane sensor/regulatory protein 4297962 3286497 BF9343_3542 Bacteroides fragilis NCTC 9343 putative transmembrane sensor/regulatory protein YP_213236.1 4297084 D 272559 CDS YP_213237.1 60683093 3286502 4297965..4300643 1 NC_003228.3 Similar to Bacteroides fragilis FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 1.3e-12, 22.82% id in 552 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3983 SWALL:Q8A0N8 (EMBL:AE016943) (1135 aa) fasta scores: E(): 2.6e-11, 21.49% id in 907 aa; hypothetical protein 4300643 3286502 BF9343_3543 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213237.1 4297965 D 272559 CDS YP_213238.1 60683094 3286500 4300650..4301684 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2173 SWALL:Q8A5R5 (EMBL:AE016935) (337 aa) fasta scores: E(): 4.2e-65, 52.32% id in 344 aa; putative lipoprotein 4301684 3286500 BF9343_3544 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213238.1 4300650 D 272559 CDS YP_213239.1 60683095 3286506 4302873..4303226 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT2178 SWALL:Q8A5R0 (EMBL:AE016935) (118 aa) fasta scores: E(): 4.4e-33, 76.72% id in 116 aa; hypothetical protein 4303226 3286506 BF9343_3546 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213239.1 4302873 D 272559 CDS YP_213240.1 60683096 3286504 complement(4303351..4304481) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG2078 SWALL:AAQ67039 (EMBL:AE017179) (390 aa) fasta scores: E(): 1.8e-70, 50.13% id in 373 aa, and to Sulfolobus solfataricus hypothetical protein SSO2139 or C01015 SWALL:P95913 (EMBL:Y08256) (395 aa) fasta scores: E(): 2.8e-06, 23.57% id in 386 aa; hypothetical protein 4304481 3286504 BF9343_3547 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213240.1 4303351 R 272559 CDS YP_213241.1 60683097 3286505 complement(4304523..4305479) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase BT0396 SWALL:Q8AAR8 (EMBL:AE016927) (329 aa) fasta scores: E(): 4.8e-67, 52.18% id in 320 aa, and to Bacillus subtilis probable undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase TagO or BSU35530 SWALL:TAGO_BACSU (SWALL:O34753) (358 aa) fasta scores: E(): 4.5e-09, 24.52% id in 318 aa. Note: Also similar to wcfL (319 aa) fasta scores: E(): 4.5e-113, 84.277% identity in 318 aa overlap, to BF3682 (317 aa) fasta scores: E(): 1.2e-110, 87.220% identity in 313 aa overlap, to BF2591 (318 aa) fasta scores: E(): 1.1e-105, 79.872% identity in 313 aa overlap, to wcgX (317 aa) fasta scores: E(): 3e-102, 79.233% identity in 313 aa overlap and to BF1565 (316 aa) fasta scores: E(): 3.7e-101, 77.955% identity in 313 aa overlap; putative glycosyl transferase 4305479 3286505 BF9343_3548 Bacteroides fragilis NCTC 9343 putative glycosyl transferase YP_213241.1 4304523 R 272559 CDS YP_213242.1 60683098 3286509 complement(4305595..4305765) 1 NC_003228.3 hypothetical protein 4305765 3286509 BF9343_3549 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213242.1 4305595 R 272559 CDS YP_213243.1 60683099 3286507 4305779..4305967 1 NC_003228.3 hypothetical protein 4305967 3286507 BF9343_3550 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213243.1 4305779 D 272559 CDS YP_213244.1 60683100 3286508 4306252..4306506 1 NC_003228.3 hypothetical protein 4306506 3286508 BF9343_3551 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213244.1 4306252 D 272559 CDS YP_213245.1 60683101 3286512 4306757..4307320 1 NC_003228.3 hypothetical protein 4307320 3286512 BF9343_3552 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213245.1 4306757 D 272559 CDS YP_213246.1 60683102 3286511 complement(4309194..4310243) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron putative DNA mismatch repair protein BT2179 SWALL:Q8A5Q9 (EMBL:AE016935) (354 aa) fasta scores: E(): 8.4e-103, 80.28% id in 355 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1281 SWALL:AAQ66361 (EMBL:AE017176) (387 aa) fasta scores: E(): 1.9e-45, 45.52% id in 369 aa; hypothetical protein 4310243 3286511 BF9343_3554 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213246.1 4309194 R 272559 CDS YP_213247.1 60683103 3286516 4310321..4311544 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, putative PG0969 SWALL:AAQ66096 (EMBL:AE017175) (405 aa) fasta scores: E(): 1e-79, 53.73% id in 402 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA or B0405 or Z0504 or ECS0456 or SF0342 or S0350 SWALL:QUEA_ECOLI (SWALL:P21516) (356 aa) fasta scores: E(): 2.1e-20, 36.88% id in 404 aa; putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase 4311544 3286516 BF9343_3555 Bacteroides fragilis NCTC 9343 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_213247.1 4310321 D 272559 CDS YP_213248.1 60683104 3286514 4311548..4312078 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative NTP pyrophosphohydrolase BT3972 SWALL:Q8A0P9 (EMBL:AE016943) (180 aa) fasta scores: E(): 2.7e-60, 86.62% id in 172 aa, and to Mycobacterium tuberculosis probable isopentenyl-diphosphate delta-isomerase Idi or Rv1745c or MT1787 or MTCY28.08c or MTCY04C12.29c SWALL:IDI_MYCTU (SWALL:P72002) (203 aa) fasta scores: E(): 2.9e-08, 30.46% id in 151 aa; putative NUDIX domain conserved hypothetical protein 4312078 3286514 BF9343_3556 Bacteroides fragilis NCTC 9343 putative NUDIX domain conserved hypothetical protein YP_213248.1 4311548 D 272559 CDS YP_213249.1 60683105 3286515 complement(4312195..4312689) 1 NC_003228.3 Similar to Staphylococcus epidermidis glutathione peroxidase SE0983 SWALL:Q8CSR9 (EMBL:AE016747) (158 aa) fasta scores: E(): 2.6e-27, 49.36% id in 158 aa, and to Schizosaccharomyces pombe glutathione peroxidase Gpx1 or SPBC32F12.03c SWALL:GPX1_SCHPO (SWALL:O59858) (158 aa) fasta scores: E(): 1.3e-25, 52.55% id in 137 aa; putative glutathione peroxidase 4312689 3286515 BF9343_3557 Bacteroides fragilis NCTC 9343 putative glutathione peroxidase YP_213249.1 4312195 R 272559 CDS YP_213250.1 60683106 3286521 complement(4312800..4315145) 1 NC_003228.3 Similar to Xanthomonas axonopodis hypothetical protein XAC1179 SWALL:Q8PN94 (EMBL:AE011747) (784 aa) fasta scores: E(): 1.5e-150, 47.18% id in 782 aa, and to Xylella fastidiosa hypothetical protein XF0842 SWALL:Q9PF36 (EMBL:AE003923) (790 aa) fasta scores: E(): 6.2e-101, 39.69% id in 791 aa; hypothetical protein 4315145 3286521 BF9343_3558 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213250.1 4312800 R 272559 CDS YP_213251.1 60683107 3286519 4315325..4319644 1 NC_003228.3 Similar, apart from the C-terminal region, to Alcaligenes sp. cation efflux system protein CzcA SWALL:CZCA_ALCSP (SWALL:P94177) (1063 aa) fasta scores: E(): 4.1e-157, 44.03% id in 1047 aa, and similar to the full length of Bordetella bronchiseptica putative efflux system transmembrane protein BB3348 SWALL:Q7WH61 (EMBL:BX640447) (1076 aa) fasta scores: E(): 8.8e-56, 26.07% id in 1120 aa; putative transport-related, membrane protein 4319644 3286519 BF9343_3559 Bacteroides fragilis NCTC 9343 putative transport-related, membrane protein YP_213251.1 4315325 D 272559 CDS YP_213252.1 60683108 3286520 4319666..4320553 1 NC_003228.3 Similar to Gloeobacter violaceus PCC 742 protein GLL2454 SWALL:BAC90395 (EMBL:AP006576) (351 aa) fasta scores: E(): 3.6e-11, 26.76% id in 269 aa, and to Nitrosomonas europaea putative cation efflux protein NE0374 SWALL:Q82XB2 (EMBL:BX321857) (387 aa) fasta scores: E(): 4e-09, 24.59% id in 305 aa; putative lipoprotein 4320553 3286520 BF9343_3560 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213252.1 4319666 D 272559 CDS YP_213253.1 60683109 3286517 4320558..4321643 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative two-component system sensor kinase, but no kinase domain BT0222 SWALL:Q8AB88 (EMBL:AE016926) (341 aa) fasta scores: E(): 7e-16, 27.58% id in 348 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein precursor YehU or B2126 or C2656 or SF2198 or S2325 SWALL:YEHU_ECOLI (SWALL:P33357) (561 aa) fasta scores: E(): 1.3e-11, 29.13% id in 230 aa; hypothetical protein 4321643 3286517 BF9343_3561 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213253.1 4320558 D 272559 CDS YP_213254.1 60683110 3286523 4321640..4322419 1 NC_003228.3 Similar to Xanthomonas axonopodis transcriptional regulator protein AlgR or XAC3719 SWALL:Q8PG98 (EMBL:AE012022) (258 aa) fasta scores: E(): 2.2e-15, 26.82% id in 261 aa, and to Vibrio cholerae hypothetical response regulatory protein VCA0850 SWALL:Y0G0_VIBCH (SWALL:Q9KL96) (261 aa) fasta scores: E(): 3.4e-12, 26.97% id in 241 aa; putative response regulator 4322419 3286523 BF9343_3562 Bacteroides fragilis NCTC 9343 putative response regulator YP_213254.1 4321640 D 272559 CDS YP_213255.1 60683111 3286525 4322508..4323977 1 NC_003228.3 Similar to Clostridium perfringens probable hydrogenase CEP2575 SWALL:Q8XHB0 (EMBL:AP003194) (490 aa) fasta scores: E(): 1e-51, 36.02% id in 483 aa, and to Desulfovibrio vulgaris Hyd Gamma HydC SWALL:Q46606 (EMBL:X57838) (606 aa) fasta scores: E(): 5.2e-06, 28.44% id in 436 aa, and to Clostridium pasteurianum periplasmic [Fe] hydrogenase 1 SWALL:PHF1_CLOPA (SWALL:P29166) (574 aa) fasta scores: E(): 8.7e-06, 27.25% id in 433 aa; putative iron hydrogenase 4323977 3286525 BF9343_3563 Bacteroides fragilis NCTC 9343 putative iron hydrogenase YP_213255.1 4322508 D 272559 CDS YP_213256.1 60683112 3286522 4323949..4324995 1 NC_003228.3 Similar to Clostridium acetobutylicum biotin synthase family enzyme CAC1631 SWALL:Q97IK9 (EMBL:AE007672) (350 aa) fasta scores: E(): 3.5e-44, 38.66% id in 344 aa, and to Bacillus sphaericus biotin synthase BioB SWALL:BIOB_BACSH (SWALL:P19206) (332 aa) fasta scores: E(): 1.2e-06, 22.31% id in 354 aa; putative biotin biosynthesis-related protein 4324995 3286522 BF9343_3564 Bacteroides fragilis NCTC 9343 putative biotin biosynthesis-related protein YP_213256.1 4323949 D 272559 CDS YP_213257.1 60683113 3286528 4325008..4326426 1 NC_003228.3 Similar to Clostridium acetobutylicum thiamine biosynthesis enzyme ThiH CAC1356 SWALL:Q97JD0 (EMBL:AE007647) (472 aa) fasta scores: E(): 1.1e-144, 74.78% id in 472 aa, and to Escherichia coli thiazole biosynthesis protein ThiH or B3990 SWALL:THIH_ECOLI (SWALL:P30140) (376 aa) fasta scores: E(): 4e-26, 30.87% id in 366 aa; putative thiamine biosyntehsis related protein 4326426 3286528 BF9343_3565 Bacteroides fragilis NCTC 9343 putative thiamine biosyntehsis related protein YP_213257.1 4325008 D 272559 CDS YP_213258.1 60683114 3286531 4326423..4327598 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis predicted gtpases TTE0814 SWALL:Q8RBK2 (EMBL:AE013047) (409 aa) fasta scores: E(): 6.8e-65, 49.61% id in 389 aa, and to Clostridium tetani GTP-binding protein CTC01325 SWALL:Q895F1 (EMBL:AE015940) (396 aa) fasta scores: E(): 8.9e-64, 46.66% id in 390 aa; hypothetical protein 4327598 3286531 BF9343_3566 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213258.1 4326423 D 272559 CDS YP_213259.1 60683115 3286527 complement(4327719..4328918) 1 NC_003228.3 putative lipoprotein 4328918 3286527 BF9343_3567 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213259.1 4327719 R 272559 CDS YP_213260.1 60683116 3288145 complement(4329335..4331644) 1 NC_003228.3 Similar to Xylella fastidiosa beta-galactosidase XF0840 SWALL:Q9PF38 (EMBL:AE003923) (612 aa) fasta scores: E(): 4.5e-86, 38.62% id in 611 aa, and to Xanthomonas manihotis beta-galactosidase precursor Bga SWALL:BGAL_XANMN (SWALL:P48982) (598 aa) fasta scores: E(): 4.8e-79, 38.54% id in 576 aa; putative glycosyl hydrolase 4331644 3288145 BF9343_3568 Bacteroides fragilis NCTC 9343 putative glycosyl hydrolase YP_213260.1 4329335 R 272559 CDS YP_213261.1 60683117 3286526 complement(4331889..4333277) 1 NC_003228.3 Similar to Chlorobium tepidum phosphoglucomutase/phosphomannomutase family protein CT0260 SWALL:Q8KFR2 (EMBL:AE012804) (476 aa) fasta scores: E(): 2.1e-74, 45.14% id in 474 aa, and to Escherichia coli phosphomannomutase ManB or RfbK or RfbK2 SWALL:RFK9_ECOLI (SWALL:P37755) (456 aa) fasta scores: E(): 1e-20, 26.54% id in 452 aa; putative phosphoglucomutase/phosphomannomutase family protein 4333277 3286526 BF9343_3569 Bacteroides fragilis NCTC 9343 putative phosphoglucomutase/phosphomannomutase family protein YP_213261.1 4331889 R 272559 CDS YP_213262.1 60683118 3289408 complement(4333314..4333958) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3949 SWALL:Q8A0S2 (EMBL:AE016942) (214 aa) fasta scores: E(): 1.1e-43, 57.87% id in 216 aa; hypothetical protein 4333958 3289408 BF9343_3570 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213262.1 4333314 R 272559 CDS YP_213263.1 60683119 3288099 complement(4334101..4335132) 1 NC_003228.3 Similar to Cytophaga johnsonae hypothetical protein FJO19 SWALL:Q8KRN5 (EMBL:AF527792) (334 aa) fasta scores: E(): 1.9e-51, 43.98% id in 316 aa, and to Porphyromonas gingivalis W83 DHH subfamily 1 protein PG1091 SWALL:AAQ66203 (EMBL:AE017175) (331 aa) fasta scores: E(): 8e-49, 39.62% id in 323 aa; hypothetical protein 4335132 3288099 BF9343_3571 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213263.1 4334101 R 272559 CDS YP_213264.1 60683120 3289417 complement(4335184..4337283) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 comec/rec2-related protein PG1594 SWALL:AAQ66623 (EMBL:AE017177) (511 aa) fasta scores: E(): 1.8e-24, 29.08% id in 526 aa, and to Bacillus subtilis comE operon protein 3 ComEC or ComE3 or BSU25570 SWALL:CME3_BACSU (SWALL:P39695) (776 aa) fasta scores: E(): 5e-11, 26.13% id in 528 aa; putative competence related membrane protein 4337283 3289417 BF9343_3572 Bacteroides fragilis NCTC 9343 putative competence related membrane protein YP_213264.1 4335184 R 272559 CDS YP_213265.1 60683121 3288142 complement(4337293..4337943) 1 NC_003228.3 Similar to Bacillus subtilis ribulose-phosphate 3-epimerase Rpe or BSU15790 SWALL:RPE_BACSU (SWALL:O34557) (217 aa) fasta scores: E(): 4.3e-35, 48.58% id in 212 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribulose-phosphate 3-epimerase Rpe or Dod or B3386 or C4156 or Z4739 or ECS4228 or SF3404 or S4358 SWALL:RPE_ECOLI (SWALL:P32661) (225 aa) fasta scores: E(): 1.1e-27, 42.45% id in 212 aa; putative ribulose-phosphate 3-epimerase 4337943 3288142 BF9343_3573 Bacteroides fragilis NCTC 9343 putative ribulose-phosphate 3-epimerase YP_213265.1 4337293 R 272559 CDS YP_213266.1 60683122 3285106 complement(4338106..4339080) 1 NC_003228.3 Similar to Escherichia coli methionyl-tRNA formyltransferase Fmt or B3288 SWALL:FMT_ECOLI (SWALL:P23882) (314 aa) fasta scores: E(): 4.8e-39, 40.9% id in 308 aa, and to Porphyromonas gingivalis W83 methionyl-tRNA formyltransferase Fmt or PG2023 SWALL:AAQ66990 (EMBL:AE017179) (323 aa) fasta scores: E(): 1.5e-61, 52.66% id in 319 aa; putative methionyl-tRNA formyltransferase 4339080 fmt 3285106 fmt Bacteroides fragilis NCTC 9343 putative methionyl-tRNA formyltransferase YP_213266.1 4338106 R 272559 CDS YP_213267.1 60683123 3288136 complement(4339175..4340968) 1 NC_003228.3 Similar to Leptospira interrogans voltage-gated CLC-type chloride channel EriC LA4210 SWALL:Q8EYK3 (EMBL:AE011574) (615 aa) fasta scores: E(): 1.7e-29, 24.44% id in 536 aa, and to Streptomyces coelicolor putative transport integral membrane protein SCO6320 or SCIF3.22c SWALL:Q93RS4 (EMBL:AL939127) (589 aa) fasta scores: E(): 1e-21, 28.54% id in 578 aa; putative transport related, membrane protein 4340968 3288136 BF9343_3575 Bacteroides fragilis NCTC 9343 putative transport related, membrane protein YP_213267.1 4339175 R 272559 CDS YP_213268.1 60683124 3288144 complement(4340965..4341528) 1 NC_003228.3 Similar to Methanopyrus kandleri translation factor Sua5 or MK0635 SWALL:Q8TXM7 (EMBL:AE010357) (212 aa) fasta scores: E(): 2e-14, 33.15% id in 184 aa, and to Pseudomonas aeruginosa hypothetical protein PA0022 SWALL:Q9I7A5 (EMBL:AE004441) (185 aa) fasta scores: E(): 9.4e-13, 33.33% id in 186 aa; hypothetical protein 4341528 3288144 BF9343_3576 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213268.1 4340965 R 272559 CDS YP_213269.1 60683125 3288137 4341608..4342042 1 NC_003228.3 Similar to Oceanobacillus iheyensis hypothetical conserved protein OB0678 SWALL:Q8ESG1 (EMBL:AP004595) (134 aa) fasta scores: E(): 8.7e-10, 29.66% id in 118 aa, and to Leptospira interrogans 4-hydroxybenzoyl-CoA thioesterase LA4149 SWALL:Q8EYR4 (EMBL:AE011569) (137 aa) fasta scores: E(): 5.5e-08, 31.03% id in 116 aa; hypothetical protein 4342042 3288137 BF9343_3577 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213269.1 4341608 D 272559 CDS YP_213270.1 60683126 3288128 complement(4342092..4344164) 1 NC_003228.3 Similar to Vibrio vulnificus conserved hypothetical protein VV13143 SWALL:Q8D845 (EMBL:AE016807) (562 aa) fasta scores: E(): 6.1e-17, 29.76% id in 336 aa, and to Vibrio parahaemolyticus hypothetical protein vpa0282 SWALL:BAC61625 (EMBL:AP005084) (559 aa) fasta scores: E(): 1.9e-05, 25.33% id in 592 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0720 SWALL:AAO75827 (EMBL:AE016928) (655 aa) fasta scores: E(): 2.6e-05, 26.91% id in 717 aa; hypothetical protein 4344164 3288128 BF9343_3578 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213270.1 4342092 R 272559 CDS YP_213271.1 60683127 3288129 complement(4344883..4345329) 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical 17.0 kDa protein ORF8 SWALL:Q9F747 (EMBL:AF285774) (157 aa) fasta scores: E(): 5.8e-40, 77.02% id in 148 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative non-specific DNA-binding protein BT2021 SWALL:AAO77128 (EMBL:AE016934) (175 aa) fasta scores: E(): 6.8e-24, 51.53% id in 163 aa, and to Bacteroides thetaiotaomicron putative non-specific DNA-binding protein BT3199 SWALL:AAO78305 (EMBL:AE016939) (168 aa) fasta scores: E(): 2.4e-12, 39.24% id in 158 aa, and to Bacteroides thetaiotaomicron putative non-specific DNA-binding protein BT2929 SWALL:AAO78035 (EMBL:AE016938) (172 aa) fasta scores: E(): 2.5e-11, 39.24% id in 158 aa; putative non-specific DNA-binding protein 4345329 3288129 BF9343_3580 Bacteroides fragilis NCTC 9343 putative non-specific DNA-binding protein YP_213271.1 4344883 R 272559 CDS YP_213272.1 60683128 3288133 complement(4346273..4347223) 1 NC_003228.3 Similar to Legionella pneumophila lipopolysaccharide biosynthesis WecA protein SWALL:Q9RDY5 (EMBL:AJ007311) (334 aa) fasta scores: E(): 1.9e-12, 29.97% id in 337 aa, and to previously sequenced Bacteroides fragilis putative UndPP-QuiNAc-p-transferase WcgX SWALL:Q9F748 (EMBL:AF285774) (316 aa) fasta scores: E(): 6.7e-107, 80.95% id in 315 aa, and to previously sequenced Bacteroides fragilis putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase WcfL SWALL:Q9XDJ1 (EMBL:AF048749) (318 aa) fasta scores: E(): 1.1e-106, 79.55% id in 313 aa; putative phosphotransferase 4347223 3288133 BF9343_3582 Bacteroides fragilis NCTC 9343 putative phosphotransferase YP_213272.1 4346273 R 272559 CDS YP_213273.1 60683129 3288119 complement(4347339..4348235) 1 NC_003228.3 Similar to Edwardsiella ictaluri UDP-glucose 4-epimerase WbeIT SWALL:Q937X6 (EMBL:AY057452) (323 aa) fasta scores: E(): 2.2e-14, 28.3% id in 318 aa, and to Bacteroides thetaiotaomicron putative BT2887 SWALL:AAO77993 (EMBL:AE016937) (326 aa) fasta scores: E(): 1.5e-13, 27.21% id in 316 aa, and to Fusobacterium nucleatum UDP-N-acetyl-D-quinovosamine 4-epimerase FN1694 SWALL:Q8R6F9 (EMBL:AE010474) (290 aa) fasta scores: E(): 1.3e-12, 28.28% id in 304 aa; DNTP-hexose dehydratase-epimerase 4348235 3288119 BF9343_3583 Bacteroides fragilis NCTC 9343 DNTP-hexose dehydratase-epimerase YP_213273.1 4347339 R 272559 CDS YP_213274.1 60683130 3288125 complement(4348232..4348984) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O157:H7 glycosyl transferase WbhA or WbdN or Z3204 or ECS2845 SWALL:Q9S5F4 (EMBL:AB008676) (260 aa) fasta scores: E(): 1.1e-28, 40.24% id in 241 aa, and to Bacillus halodurans teichuronic acid biosynthesis Tuag or BH3661 SWALL:Q9K6R6 (EMBL:AP001519) (257 aa) fasta scores: E(): 6.7e-37, 42.51% id in 247 aa, and to Oceanobacillus iheyensis glycosyltransferase ob2925 SWALL:Q8EMC7 (EMBL:AP004603) (258 aa) fasta scores: E(): 7.8e-37, 40.72% id in 248 aa; putative glycosyltransferase protein 4348984 3288125 BF9343_3584 Bacteroides fragilis NCTC 9343 putative glycosyltransferase protein YP_213274.1 4348232 R 272559 CDS YP_213275.1 60683131 3288122 complement(4349029..4349862) 1 NC_003228.3 Similar to Streptococcus agalactiae galactosyltransferase CpsIBI SWALL:Q9AQJ0 (EMBL:AB050723) (324 aa) fasta scores: E(): 3.4e-12, 31.15% id in 199 aa, and to Streptococcus agalactiae CpsI or CpsIAI SWALL:Q8VL99 (EMBL:AF363060) (266 aa) fasta scores: E(): 4e-12, 28.62% id in 262 aa, and to Streptococcus agalactiae CpsIAI or CpsI SWALL:Q8VLB0 (EMBL:AF332893) (324 aa) fasta scores: E(): 4.7e-12, 28.62% id in 262 aa; putative glycosyltransferase protein 4349862 3288122 BF9343_3585 Bacteroides fragilis NCTC 9343 putative glycosyltransferase protein YP_213275.1 4349029 R 272559 CDS YP_213276.1 60683132 3288126 complement(4349891..4350976) 1 NC_003228.3 Similar to Streptococcus thermophilus exopolysaccharide biosynthesis EpsJ or Wzy SWALL:Q56047 (EMBL:U40830) (360 aa) fasta scores: E(): 8.3e-11, 22.96% id in 344 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT1710 SWALL:AAO76817 (EMBL:AE016932) (370 aa) fasta scores: E(): 1.7e-16, 24.46% id in 372 aa, and to Bacillus subtilis hypothetical protein YveQ SWALL:P71056 (EMBL:Z71928) (367 aa) fasta scores: E(): 5.9e-13, 23.86% id in 373 aa; putative polysaccharide polymerase 4350976 3288126 BF9343_3586 Bacteroides fragilis NCTC 9343 putative polysaccharide polymerase YP_213276.1 4349891 R 272559 CDS YP_213277.1 60683133 3288117 complement(4350973..4351959) 1 NC_003228.3 Similar to Vibrio cholerae sugar transferase SWALL:O34234 (EMBL:Y07786) (337 aa) fasta scores: E(): 1.9e-43, 42.98% id in 342 aa, and to Vibrio cholerae ORF139-19 protein SWALL:P74947 (EMBL:AB012956) (337 aa) fasta scores: E(): 1.4e-43, 43.36% id in 339 aa, and to Vibrio cholerae WblC protein wblC SWALL:O87159 (EMBL:AB012957) (340 aa) fasta scores: E(): 1.9e-32, 36.09% id in 338 aa; putative glycosyltransferase protein 4351959 3288117 BF9343_3587 Bacteroides fragilis NCTC 9343 putative glycosyltransferase protein YP_213277.1 4350973 R 272559 CDS YP_213278.1 60683134 3288115 complement(4351956..4352825) 1 NC_003228.3 Similar to Vibrio cholerae O-antigen-related WblA protein SWALL:O87157 (EMBL:AB012957) (281 aa) fasta scores: E(): 9.1e-35, 36.39% id in 283 aa, and to Synechococcus elongatus TLR2316 protein SWALL:Q8DGK1 (EMBL:AP005377) (293 aa) fasta scores: E(): 1.1e-33, 41.58% id in 291 aa, and to Synechococcus elongatus alpha-1,2-fucosyltransferase tll0994 SWALL:Q8DK72 (EMBL:AP005372) (293 aa) fasta scores: E(): 5.4e-32, 41.15% id in 294 aa; putative alpha-1,2-fucosyltransferase 4352825 3288115 BF9343_3588 Bacteroides fragilis NCTC 9343 putative alpha-1,2-fucosyltransferase YP_213278.1 4351956 R 272559 CDS YP_213279.1 60683135 3288118 complement(4352859..4353839) 1 NC_003228.3 Similar to Vibrio cholerae O-antigen-related WbfL protein SWALL:O87156 (EMBL:AB012957) (346 aa) fasta scores: E(): 2.3e-05, 36.36% id in 110 aa, and to Helicobacter pylori alpha1,3-fucosyltransferase FucT SWALL:O30511 (EMBL:AF008596) (478 aa) fasta scores: E(): 0.00021, 38.14% id in 97 aa, and to Helicobacter pylori J99 alpha- JHP1002 SWALL:Q9ZKD7 (EMBL:AE001528) (436 aa) fasta scores: E(): 0.00026, 32% id in 125 aa; putative transferase 4353839 3288118 BF9343_3589 Bacteroides fragilis NCTC 9343 putative transferase YP_213279.1 4352859 R 272559 CDS YP_213280.1 60683136 3288109 complement(4353875..4354507) 1 NC_003228.3 Similar to Staphylococcus aureus putative O-acetyl transferase (capsular polysaccharide synthesis enzyme o-acetyl transferase) Cap5H or CapH or sav0156 or sa0151 SWALL:P72386 (EMBL:U77308) (208 aa) fasta scores: E(): 3.5e-16, 40.71% id in 167 aa, and to Leptospira interrogans probable macrolide acetyltransferase la3679 SWALL:Q8F018 (EMBL:AE011523) (218 aa) fasta scores: E(): 3.1e-16, 40.26% id in 149 aa, and to Agrobacterium tumefaciens acetyl transferase atu1146 or agr_c_2119 SWALL:Q8UG93 (EMBL:AE009077) (210 aa) fasta scores: E(): 3.5e-16, 38.75% id in 160 aa; putative O-acetyl transferase (capsular polysaccharide synthesis enzyme o-acetyl transferase) 4354507 3288109 BF9343_3590 Bacteroides fragilis NCTC 9343 putative O-acetyl transferase (capsular polysaccharide synthesis enzyme o-acetyl transferase) YP_213280.1 4353875 R 272559 CDS YP_213281.1 60683137 3288108 complement(4354527..4355378) 1 NC_003228.3 no significant database matches; hypothetical protein 4355378 3288108 BF9343_3591 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213281.1 4354527 R 272559 CDS YP_213282.1 60683138 3288111 complement(4355375..4356907) 1 NC_003228.3 Similar to Streptococcus thermophilus Eps operon protein Eps11R SWALL:Q8GP39 (EMBL:AF454501) (500 aa) fasta scores: E(): 3.6e-15, 21.83% id in 513 aa, and to Clostridium perfringens probable flippase CPE0489 SWALL:Q8XN49 (EMBL:AP003187) (512 aa) fasta scores: E(): 1.5e-46, 29.84% id in 516 aa, and to Clostridium perfringens probable flippase CPE0505 SWALL:Q8XN33 (EMBL:AP003187) (506 aa) fasta scores: E(): 5.1e-44, 34.11% id in 513 aa; possible flippase 4356907 3288111 BF9343_3592 Bacteroides fragilis NCTC 9343 possible flippase YP_213282.1 4355375 R 272559 CDS YP_213283.1 60683139 3288104 complement(4356927..4357250) 1 NC_003228.3 Similar to Pseudomonas syringae conserved domain protein Pspto0710 SWALL:AAO54252 (EMBL:AE016858) (98 aa) fasta scores: E(): 2.2e-17, 54.63% id in 97 aa; hypothetical protein 4357250 3288104 BF9343_3593 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213283.1 4356927 R 272559 CDS YP_213284.1 60683140 3288114 complement(4357247..4357978) 1 NC_003228.3 Similar to Pasteurella multocida BcbE SWALL:Q9L9L0 (EMBL:AF169324) (236 aa) fasta scores: E(): 5.2e-11, 29.48% id in 234 aa, and to Pseudomonas syringae lipopolysaccharide biosynthesis protein, putative PSPTO0706 SWALL:AAO54248 (EMBL:AE016858) (253 aa) fasta scores: E(): 4.9e-31, 43.26% id in 245 aa, and to Pseudomonas syringae hypothetical protein PSPTO0709 SWALL:AAO54251 (EMBL:AE016858) (240 aa) fasta scores: E(): 1.8e-15, 30.08% id in 236 aa; putative nucleotidyltransferase 4357978 3288114 BF9343_3594 Bacteroides fragilis NCTC 9343 putative nucleotidyltransferase YP_213284.1 4357247 R 272559 CDS YP_213285.1 60683141 3288105 complement(4357981..4358697) 1 NC_003228.3 Similar to Pasteurella piscicida capsular polysaccharide biosynthesis protein BcbE SWALL:Q8VW66 (EMBL:AB074293) (242 aa) fasta scores: E(): 2.6e-09, 24.18% id in 244 aa, and to Pseudomonas syringae hypothetical protein PSPTO0709 SWALL:AAO54251 (EMBL:AE016858) (240 aa) fasta scores: E(): 9.7e-24, 31.48% id in 235 aa, and to Pseudomonas syringae lipopolysaccharide biosynthesis protein, putative PSPTO0706 SWALL:AAO54248 (EMBL:AE016858) (253 aa) fasta scores: E(): 2.9e-20, 34.24% id in 219 aa; putative nucleotidyltransferase 4358697 3288105 BF9343_3595 Bacteroides fragilis NCTC 9343 putative nucleotidyltransferase YP_213285.1 4357981 R 272559 CDS YP_213286.1 60683142 3288100 complement(4358694..4359326) 1 NC_003228.3 Similar to Pseudomonas syringae HAD-superfamily hydrolase PSPTO0708 SWALL:AAO54250 (EMBL:AE016858) (212 aa) fasta scores: E(): 4.6e-49, 61.65% id in 206 aa, and to Thermoanaerobacter tengcongensis predicted phosphatase/phosphohexomutase TTE1983 SWALL:Q8R8L2 (EMBL:AE013150) (224 aa) fasta scores: E(): 9.6e-15, 34.05% id in 185 aa, and to Clostridium acetobutylicum beta-phosphoglucomutase CAC2614 SWALL:Q97FW2 (EMBL:AE007758) (215 aa) fasta scores: E(): 5.4e-13, 31.95% id in 194 aa; putative haloacid dehalogenase-like hydrolase 4359326 3288100 BF9343_3596 Bacteroides fragilis NCTC 9343 putative haloacid dehalogenase-like hydrolase YP_213286.1 4358694 R 272559 CDS YP_213287.1 60683143 3288107 complement(4359338..4359958) 1 NC_003228.3 Similar to Pseudomonas syringae hypothetical protein PSPTO0707 SWALL:AAO54249 (EMBL:AE016858) (204 aa) fasta scores: E(): 1e-26, 39.51% id in 205 aa; hypothetical protein 4359958 3288107 BF9343_3597 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213287.1 4359338 R 272559 CDS YP_213288.1 60683144 3287599 complement(4360057..4360542) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative transcriptional regulator UpbZ SWALL:Q8VSS8 (EMBL:AF366394) (160 aa) fasta scores: E(): 1.8e-62, 94.34% id in 159 aa, and to previously sequenced Bacteroides fragilis hypothetical 18.5 kDa protein UpbZ SWALL:Q9F768 (EMBL:AF285774) (161 aa) fasta scores: E(): 1.1e-36, 58.49% id in 159 aa, and to previously sequenced Bacteroides fragilis UpaZ SWALL:Q93QW5 (EMBL:AF189282) (157 aa) fasta scores: E(): 9.2e-35, 56.41% id in 156 aa; putative transcriptional regulator 4360542 updZ 3287599 updZ Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_213288.1 4360057 R 272559 CDS YP_213289.1 60683145 3288121 complement(4360601..4361140) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis putative transcriptional regulator UpdY SWALL:Q8VSS9 (EMBL:AF366394) (179 aa) fasta scores: E(): 6.7e-67, 100% id in 179 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT0462 SWALL:AAO75569 (EMBL:AE016927) (184 aa) fasta scores: E(): 1.5e-13, 35.22% id in 159 aa, and to previously sequenced Bacteroides fragilis UpaY SWALL:Q93QW6 (EMBL:AF189282) (172 aa) fasta scores: E(): 7.8e-09, 28.4% id in 169 aa; putative transcriptional regulator 4361140 updY 3288121 updY Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_213289.1 4360601 R 272559 CDS YP_213290.1 60683146 3288101 4361941..4362132 1 NC_003228.3 no significant database matches; hypothetical protein 4362132 3288101 BF9343_3600 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213290.1 4361941 D 272559 CDS YP_213291.1 60683147 3288094 4362228..4362575 1 NC_003228.3 Similar to Bacteroides fragilis hypothetical protein SWALL:Q8VU10 (EMBL:AF285774) (115 aa) fasta scores: E(): 1.3e-28, 59.13% id in 115 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0593 SWALL:Q8AA72 (EMBL:AE016928) (121 aa) fasta scores: E(): 1e-21, 48.76% id in 121 aa. Note: Also similar to BF1546 (116 aa) fasta scores: E(): 5.5e-48, 94.783% identity in 115 aa overlap and to BF0728 (116 aa) fasta scores: E(): 3.4e-44, 86.957% identity in 115 aa overlap; hypothetical protein 4362575 3288094 BF9343_3601 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213291.1 4362228 D 272559 CDS YP_213292.1 60683148 3288102 4362714..4363547 1 NC_003228.3 Identical to the previously sequenced Bacteroides fragilis hypothetical protein SWALL:Q8VST0 (EMBL:AF366394) (277 aa) fasta scores: E(): 6.4e-105, 100% id in 277 aa, and similar to Listeria innocua hypothetical phage-related protein LIN1244/LIN1753 SWALL:YC44_LISIN (SWALL:Q925X2) (305 aa) fasta scores: E(): 3.4e-09, 26.66% id in 270 aa; hypothetical protein 4363547 3288102 BF9343_3602 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213292.1 4362714 D 272559 CDS YP_213293.1 60683149 3287231 complement(4363874..4364446) 1 NC_003228.3 Similar to Escherichia coli DNA-3-methyladenine glycosylase i Tag or B3549 SWALL:3MG1_ECOLI (SWALL:P05100) (187 aa) fasta scores: E(): 6.2e-35, 52.77% id in 180 aa, and to Leptospira interrogans DNA-3-methyladenine glycosidase I Tag LA3832 SWALL:Q8EZM1 (EMBL:AE011538) (201 aa) fasta scores: E(): 3.8e-38, 56.11% id in 180 aa; putative DNA-3-methyladenine glycosylase I 4364446 tag 3287231 tag Bacteroides fragilis NCTC 9343 putative DNA-3-methyladenine glycosylase I YP_213293.1 4363874 R 272559 CDS YP_213294.1 60683150 3288096 4364645..4366363 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 single-stranded-DNA-specific exonuclease RecJ or PG0054 SWALL:AAQ65304 (EMBL:AE017172) (584 aa) fasta scores: E(): 3e-128, 57.71% id in 577 aa, and to Escherichia coli single-stranded-DNA-specific exonuclease RecJ or B2892 SWALL:RECJ_ECOLI (SWALL:P21893) (577 aa) fasta scores: E(): 3.5e-17, 31.68% id in 565 aa; putative single-stranded-DNA-specific exonuclease 4366363 3288096 BF9343_3604 Bacteroides fragilis NCTC 9343 putative single-stranded-DNA-specific exonuclease YP_213294.1 4364645 D 272559 CDS YP_213295.1 60683151 3288098 4366360..4368264 1 NC_003228.3 Similar to Clostridium acetobutylicum RecQ protein, superfamily II DNA helicase CAC2687 SWALL:Q97FP1 (EMBL:AE007766) (714 aa) fasta scores: E(): 8.3e-55, 32.83% id in 606 aa, and to Escherichia coli ATP-dependent DNA helicase RecQ or B3822 SWALL:RECQ_ECOLI (SWALL:P15043) (607 aa) fasta scores: E(): 3.9e-49, 38.9% id in 383 aa; putative DEAD box helicase 4368264 3288098 BF9343_3605 Bacteroides fragilis NCTC 9343 putative DEAD box helicase YP_213295.1 4366360 D 272559 CDS YP_213296.1 60683152 3288097 4368328..4369290 1 NC_003228.3 Significant similarity to Bacteroides thetaiotaomicron TPR-domain containing protein BT3937 SWALL:Q8A0T4 (EMBL:AE016942) (320 aa) fasta scores: E(): 5.1e-88, 75% id in 320 aa, and to Porphyromonas gingivalis W83 TPR domain protein PG1212 SWALL:AAQ66302 (EMBL:AE017176) (337 aa) fasta scores: E(): 8.3e-12, 27.04% id in 244 aa; hypothetical protein 4369290 3288097 BF9343_3606 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213296.1 4368328 D 272559 CDS YP_213297.1 60683153 3288085 complement(4369358..4370593) 1 NC_003228.3 Similar to Escherichia coli O6 hypothetical transport protein YjiZ or C4921 SWALL:Q8FB94 (EMBL:AE016770) (427 aa) fasta scores: E(): 3e-18, 25.53% id in 419 aa, and to Bacillus subtilis hexuronate transporter ExuT or BSU12360 SWALL:EXUT_BACSU (SWALL:O34456) (422 aa) fasta scores: E(): 8.3e-17, 25% id in 412 aa; putative transport related, membrane protein 4370593 3288085 BF9343_3607 Bacteroides fragilis NCTC 9343 putative transport related, membrane protein YP_213297.1 4369358 R 272559 CDS YP_213298.1 60683154 3288093 complement(4370599..4372188) 1 NC_003228.3 Similar to Bacteroides fragilis sialidase NanH SWALL:NANH_BACFR (SWALL:P31206) (266 aa) fasta scores: E(): 1.3e-33, 42.8% id in 285 aa, and to Clostridium perfringens sialidase NanH SWALL:NANH_CLOPE (SWALL:P10481) (382 aa) fasta scores: E(): 2.5e-08, 26.35% id in 368 aa; putative sialidase 4372188 3288093 BF9343_3608 Bacteroides fragilis NCTC 9343 putative sialidase YP_213298.1 4370599 R 272559 CDS YP_213299.1 60683155 3288086 complement(4372281..4373417) 1 NC_003228.3 hypothetical protein 4373417 3288086 BF9343_3609 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213299.1 4372281 R 272559 CDS YP_213300.1 60683156 3288078 complement(4373474..4374946) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3089 SWALL:Q8A366 (EMBL:AE016938) (496 aa) fasta scores: E(): 7.2e-15, 25.68% id in 514 aa, and to Bacteroides fragilis FrrH SWALL:Q8VTA8 (EMBL:AF329100) (495 aa) fasta scores: E(): 2.5e-12, 24.34% id in 493 aa; putative lipoprotein 4374946 3288078 BF9343_3610 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213300.1 4373474 R 272559 CDS YP_213301.1 60683157 3288083 complement(4374948..4378244) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1440 SWALL:Q8A7T4 (EMBL:AE016931) (1042 aa) fasta scores: E(): 1.4e-46, 26.15% id in 1128 aa, and to Bacteroides fragilis outer membrane protein OMP121 SWALL:Q93TH9 (EMBL:AF357210) (1125 aa) fasta scores: E(): 4.6e-32, 26.17% id in 1169 aa; hypothetical protein 4378244 3288083 BF9343_3611 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213301.1 4374948 R 272559 CDS YP_213302.1 60683158 3288081 complement(4378335..4379243) 1 NC_003228.3 Similar to Vibrio vulnificus YJ016 putative N-acetylneuraminate lyase VVA1199 SWALL:BAC97225 (EMBL:AP005349) (299 aa) fasta scores: E(): 7.9e-45, 41.07% id in 297 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri N-acetylneuraminate lyase NanA or Npl or B3225 or Z4583 or ECS4098 or SF3261 or S3478 SWALL:NANA_ECOLI (SWALL:P06995) (296 aa) fasta scores: E(): 5.1e-26, 33.21% id in 283 aa; putative N-acetylneuraminate lyase (sialic acid lyase) 4379243 3288081 BF9343_3612 Bacteroides fragilis NCTC 9343 putative N-acetylneuraminate lyase (sialic acid lyase) YP_213302.1 4378335 R 272559 CDS YP_213303.1 60683159 3288070 complement(4379449..4380171) 1 NC_003228.3 Similar to Rhizobium loti transcriptional regulator MLL6865 SWALL:Q987X6 (EMBL:AP003010) (250 aa) fasta scores: E(): 4.6e-09, 22.83% id in 219 aa, and to Escherichia coli, and Shigella flexneri putative L-lactate dehydrogenase operon regulatory protein LldR or LctR or B3604 or SF3643 or S4125 SWALL:LLDR_ECOLI (SWALL:P33233) (258 aa) fasta scores: E(): 1.6e-06, 27.11% id in 236 aa; putative GntR-family regulatory protein 4380171 3288070 BF9343_3613 Bacteroides fragilis NCTC 9343 putative GntR-family regulatory protein YP_213303.1 4379449 R 272559 CDS YP_213304.1 60683160 3288076 4380639..4381484 1 NC_003228.3 Similar to the C-terminal region of Erwinia herbicola P-protein [includes: chorismate mutase (cm); prephenate dehydratase (pdt)] PheA SWALL:PHEA_ERWHE (SWALL:Q02286) (387 aa) fasta scores: E(): 2.2e-24, 32.36% id in 275 aa, and of Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri P-protein [includes: chorismate mutase (cm); prephenate dehydratase (pdt)] PheA or B2599 or Z3891 or ECS3462 or SF2659 or S2836 SWALL:PHEA_ECOLI (SWALL:P07022) (386 aa) fasta scores: E(): 7.5e-24, 31.88% id in 276 aa; putative prefrenate dehydratase 4381484 3288076 BF9343_3614 Bacteroides fragilis NCTC 9343 putative prefrenate dehydratase YP_213304.1 4380639 D 272559 CDS YP_213305.1 60683161 3288074 4381459..4382643 1 NC_003228.3 Similar to Aquifex aeolicus aminotransferase AspC4 or AQ_273 SWALL:O66630 (EMBL:AE000681) (387 aa) fasta scores: E(): 2.5e-55, 42.4% id in 382 aa, and to Bacillus subtilis probable aspartate aminotransferase YwfG or IPA-85D or BSU37690 SWALL:AAT2_BACSU (SWALL:P39643) (399 aa) fasta scores: E(): 2.6e-47, 35.75% id in 386 aa; putative aminotransferase 4382643 3288074 BF9343_3615 Bacteroides fragilis NCTC 9343 putative aminotransferase YP_213305.1 4381459 D 272559 CDS YP_213306.1 60683162 3288062 4382666..4383727 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase PG0885 SWALL:AAQ66031 (EMBL:AE017175) (366 aa) fasta scores: E(): 2.4e-69, 54.07% id in 344 aa, and to Bacillus subtilis AroA(G) protein [includes: phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase] AroA or BSU29750 SWALL:AROG_BACSU (SWALL:P39912) (358 aa) fasta scores: E(): 2.4e-21, 35.24% id in 244 aa; putative chorismate mutase 4383727 3288062 BF9343_3616 Bacteroides fragilis NCTC 9343 putative chorismate mutase YP_213306.1 4382666 D 272559 CDS YP_213307.1 60683163 3288068 4383743..4384516 1 NC_003228.3 Similar to Coxiella burnetii prephenate dehydrogenase family protein CBU0984 SWALL:Q83CW8 (EMBL:AE016963) (258 aa) fasta scores: E(): 5.8e-07, 25.66% id in 226 aa, and to Escherichia coli T-protein [includes: chorismate mutase(cm); prephenate dehydrogenase (pdh)] TyrA or B2600 SWALL:TYRA_ECOLI (SWALL:P07023) (373 aa) fasta scores: E(): 0.0019, 20.22% id in 262 aa; putative prephenate dehydrogenase family protein 4384516 3288068 BF9343_3617 Bacteroides fragilis NCTC 9343 putative prephenate dehydrogenase family protein YP_213307.1 4383743 D 272559 CDS YP_213308.1 60683164 3288065 4384734..4385108 1 NC_003228.3 hypothetical protein 4385108 3288065 BF9343_3618 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213308.1 4384734 D 272559 CDS YP_213309.1 60683165 3288056 4385263..4387266 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 DNA primase DnaG or PG1814 SWALL:AAQ66812 (EMBL:AE017178) (673 aa) fasta scores: E(): 3.5e-122, 51.77% id in 676 aa, and to Bacillus subtilis DNA primase DnaG or DnaE or BSU25210 SWALL:PRIM_BACSU (SWALL:P05096) (603 aa) fasta scores: E(): 7.6e-48, 33.99% id in 453 aa; putative DNA primase 4387266 3288056 BF9343_3619 Bacteroides fragilis NCTC 9343 putative DNA primase YP_213309.1 4385263 D 272559 CDS YP_213310.1 60683166 3288061 complement(4387301..4388893) 1 NC_003228.3 Similar to Salmonella typhi putative secreted sulfatase STY0042 or T0037 SWALL:Q8Z9N9 (EMBL:AL627265) (497 aa) fasta scores: E(): 2.4e-31, 33.12% id in 474 aa, and to Escherichia coli arylsulfatase AslA or AtsA or B3801 SWALL:ASLA_ECOLI (SWALL:P25549) (551 aa) fasta scores: E(): 6.6e-11, 27.92% id in 462 aa. Note: Also similar to the upstream CDS BF3722 (494 aa) fasta scores: E(): 4.3e-86, 46.586% identity in 498 aa overlap; putative exported sulfatase 4388893 3288061 BF9343_3620 Bacteroides fragilis NCTC 9343 putative exported sulfatase YP_213310.1 4387301 R 272559 CDS YP_213311.1 60683167 3288058 complement(4388920..4390401) 1 NC_003228.3 Similar to Rhodopirellula baltica N-acetylgalactosamine 6-sulfate sulfatase RB6765 SWALL:Q7UPR8 (EMBL:BX294144) (496 aa) fasta scores: E(): 4.7e-63, 44.37% id in 498 aa, and to Salmonella typhimurium putative arylsulfatase STM0035 SWALL:Q8ZRZ7 (EMBL:AE008695) (497 aa) fasta scores: E(): 1.4e-34, 33.53% id in 504 aa. Note: Also similar to the CDS just downstream BF3721 (531 aa) fasta scores: E(): 6.3e-84, 46.586% identity in 498 aa overlap; putative exported uslfatase 4390401 3288058 BF9343_3621 Bacteroides fragilis NCTC 9343 putative exported uslfatase YP_213311.1 4388920 R 272559 CDS YP_213312.1 60683168 3288047 complement(4390485..4392092) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0030 SWALL:Q8ABT0 (EMBL:AE016926) (609 aa) fasta scores: E(): 9.8e-24, 33.22% id in 614 aa, and to Microscilla sp. PRE1 MS107 SWALL:Q93PC2 (EMBL:AF339846) (572 aa) fasta scores: E(): 1.6e-09, 25.8% id in 589 aa; hypothetical protein 4392092 3288047 BF9343_3622 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213312.1 4390485 R 272559 CDS YP_213313.1 60683169 3288055 complement(4392106..4395414) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0754 SWALL:Q8A9R1 (EMBL:AE016929) (1138 aa) fasta scores: E(): 1.8e-86, 35.54% id in 1159 aa, and to Porphyromonas gingivalis receptor antigen RagA SWALL:Q9ZA60 (EMBL:AJ130872) (1017 aa) fasta scores: E(): 1e-36, 29.03% id in 1054 aa; hypothetical protein 4395414 3288055 BF9343_3623 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213313.1 4392106 R 272559 CDS YP_213314.1 60683170 3288049 complement(4395649..4396581) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative anti-sigma factor BT0189 SWALL:Q8ABC1 (EMBL:AE016926) (327 aa) fasta scores: E(): 7.5e-14, 26.18% id in 317 aa, and to Wolinella succinogenes putative transmembrane sensor WS0590 SWALL:CAE09722 (EMBL:BX571658) (320 aa) fasta scores: E(): 3.7e-09, 28.12% id in 288 aa; hypothetical protein 4396581 3288049 BF9343_3624 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213314.1 4395649 R 272559 CDS YP_213315.1 60683171 3288037 complement(4396657..4397235) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT2463 SWALL:Q8A4Y4 (EMBL:AE016936) (189 aa) fasta scores: E(): 6.6e-23, 40.67% id in 177 aa, and to Bacteroides fragilis RNA polymerase ECF-type sigma factor SWALL:AAQ84479 (EMBL:AY372755) (186 aa) fasta scores: E(): 1.2e-19, 36.9% id in 168 aa; putative RNA polymerase sigma factor 4397235 3288037 BF9343_3625 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_213315.1 4396657 R 272559 CDS YP_213316.1 60683172 3285183 complement(4397363..4397947) 1 NC_003228.3 Similar to Bacillus subtilis GTP cyclohydrolase I FolE or MtrA or BSU22780 SWALL:GCH1_BACSU (SWALL:P19465) (190 aa) fasta scores: E(): 3e-31, 51.08% id in 184 aa, and to Pseudomonas aeruginosa GTP cyclohydrolase I 2 FolE2 or PA1674 SWALL:GC12_PSEAE (SWALL:Q9I351) (181 aa) fasta scores: E(): 5.2e-39, 58.65% id in 179 aa; putative GTP cyclohydrolase I 4397947 folE 3285183 folE Bacteroides fragilis NCTC 9343 putative GTP cyclohydrolase I YP_213316.1 4397363 R 272559 CDS YP_213317.1 60683173 3288046 complement(4397950..4398399) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3930 SWALL:Q8A0U1 (EMBL:AE016942) (149 aa) fasta scores: E(): 6.1e-43, 75.16% id in 149 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0624 SWALL:AAQ65808 (EMBL:AE017174) (168 aa) fasta scores: E(): 6.9e-08, 30.18% id in 159 aa; hypothetical protein 4398399 3288046 BF9343_3627 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213317.1 4397950 R 272559 CDS YP_213318.1 60683174 3286518 complement(4398476..4399231) 1 NC_003228.3 Similar to Bacillus subtilis triosephosphate isomerase TpiA or Tpi or BSU33920 SWALL:TPIS_BACSU (SWALL:P27876) (253 aa) fasta scores: E(): 4.5e-38, 43.6% id in 250 aa, and to Fusobacterium nucleatum triosephosphate isomerase TpiA or FN1366 SWALL:TPIS_FUSNN (SWALL:Q8RDX7) (251 aa) fasta scores: E(): 2.2e-43, 49.6% id in 252 aa; putative triosephosphate isomerase 4399231 tpiA 3286518 tpiA Bacteroides fragilis NCTC 9343 putative triosephosphate isomerase YP_213318.1 4398476 R 272559 CDS YP_213319.1 60683175 3288043 complement(4399280..4400542) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3928 SWALL:Q8A0U3 (EMBL:AE016942) (343 aa) fasta scores: E(): 3.7e-109, 76.83% id in 341 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0622 SWALL:AAQ65806 (EMBL:AE017174) (430 aa) fasta scores: E(): 2.8e-54, 36.6% id in 418 aa; hypothetical protein 4400542 3288043 BF9343_3629 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213319.1 4399280 R 272559 CDS YP_213320.1 60683176 3287999 complement(4400601..4401143) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3927 SWALL:Q8A0U4 (EMBL:AE016942) (180 aa) fasta scores: E(): 6.6e-65, 96.11% id in 180 aa, and to Prevotella ruminicola putative protein SWALL:Q9ZN62 (EMBL:AB022867) (188 aa) fasta scores: E(): 5.5e-45, 69.94% id in 173 aa; hypothetical protein 4401143 3287999 BF9343_3630 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213320.1 4400601 R 272559 CDS YP_213321.1 60683177 3288036 complement(4401248..4402129) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 peptidase, M23/M37 family PG2192 SWALL:AAQ67138 (EMBL:AE017179) (337 aa) fasta scores: E(): 6.6e-43, 46.34% id in 287 aa, and to Bacillus halodurans hypothetical protein BH1600 SWALL:Q9KCH1 (EMBL:AP001512) (303 aa) fasta scores: E(): 1.9e-11, 33.93% id in 221 aa; putative exported peptidase 4402129 3288036 BF9343_3631 Bacteroides fragilis NCTC 9343 putative exported peptidase YP_213321.1 4401248 R 272559 CDS YP_213322.1 60683178 3288034 complement(4402152..4402616) 1 NC_003228.3 Similar to Pyrococcus furiosus nucleoside diphosphate kinase Ndk or PF0931 SWALL:NDK_PYRFU (SWALL:Q8U2A8) (161 aa) fasta scores: E(): 3.3e-24, 47.02% id in 151 aa, and to Bacillus subtilis nucleoside diphosphate kinase Ndk or BSU22730 SWALL:NDK_BACSU (SWALL:P31103) (148 aa) fasta scores: E(): 2.2e-22, 45.27% id in 148 aa; putative nucleoside diphosphate kinase 4402616 3288034 BF9343_3632 Bacteroides fragilis NCTC 9343 putative nucleoside diphosphate kinase YP_213322.1 4402152 R 272559 CDS YP_213323.1 60683179 3288000 complement(4402835..4404931) 1 NC_003228.3 Similar to Chlorobium tepidum ATP-dependent DNA helicase RecG or CT1575 SWALL:Q8KC51 (EMBL:AE012913) (704 aa) fasta scores: E(): 3.4e-96, 47.16% id in 687 aa, and to Escherichia coli ATP-dependent DNA helicase RecG or B3652 SWALL:RECG_ECOLI (SWALL:P24230) (693 aa) fasta scores: E(): 5.4e-84, 41.39% id in 674 aa; putative ATP-dependent DNA helicase 4404931 3288000 BF9343_3633 Bacteroides fragilis NCTC 9343 putative ATP-dependent DNA helicase YP_213323.1 4402835 R 272559 CDS YP_213324.1 60683180 3288030 complement(4404931..4405590) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 4-diphosphocytidyl-2C-methyl-D-erythritol synthase IspD or PG1434 SWALL:AAQ66487 (EMBL:AE017177) (222 aa) fasta scores: E(): 3.2e-34, 49.09% id in 220 aa, and to Bacillus subtilis 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD or BSU00900 SWALL:ISPD_BACSU (SWALL:Q06755) (232 aa) fasta scores: E(): 1.6e-19, 37.66% id in 223 aa; putative terpenoid biosynthesis-related protein 4405590 3288030 BF9343_3634 Bacteroides fragilis NCTC 9343 putative terpenoid biosynthesis-related protein YP_213324.1 4404931 R 272559 CDS YP_213325.1 60683181 3288028 complement(4405595..4406146) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 ThiJ/PfpI family protein PG0634 SWALL:AAQ65818 (EMBL:AE017174) (181 aa) fasta scores: E(): 4.4e-25, 44.44% id in 180 aa, and to Escherichia coli 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme ThiJ or B0424 SWALL:THIJ_ECOLI (SWALL:Q46948) (196 aa) fasta scores: E(): 3.2e-11, 31.63% id in 177 aa; putative thiamine biosynthesis related protein 4406146 3288028 BF9343_3635 Bacteroides fragilis NCTC 9343 putative thiamine biosynthesis related protein YP_213325.1 4405595 R 272559 CDS YP_213326.1 60683182 3288002 complement(4406218..4407060) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG0633 SWALL:AAQ65817 (EMBL:AE017174) (275 aa) fasta scores: E(): 1.1e-12, 35.51% id in 290 aa, and to Neisseria meningitidis TonB protein or NMB1730 SWALL:TONB_NEIMB (SWALL:P57004) (280 aa) fasta scores: E(): 1.8e-08, 32.3% id in 260 aa; putative TonB exported protein 4407060 3288002 BF9343_3636 Bacteroides fragilis NCTC 9343 putative TonB exported protein YP_213326.1 4406218 R 272559 CDS YP_213327.1 60683183 3288015 complement(4407057..4407494) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 biopolymer transport protein ExbD, putative PG0632 SWALL:AAQ65816 (EMBL:AE017174) (139 aa) fasta scores: E(): 1.9e-27, 57.14% id in 140 aa, and to Haemophilus influenzae TolR protein or HI0384 SWALL:TOLR_HAEIN (SWALL:P43769) (139 aa) fasta scores: E(): 7.5e-05, 28.05% id in 139 aa; putative tansport related protein 4407494 3288015 BF9343_3637 Bacteroides fragilis NCTC 9343 putative tansport related protein YP_213327.1 4407057 R 272559 CDS YP_213328.1 60683184 3288025 complement(4407550..4408272) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 MotA/TolQ/ExbB proton channel family protein PG0631 SWALL:AAQ65815 (EMBL:AE017174) (204 aa) fasta scores: E(): 1.9e-50, 67.64% id in 204 aa, and to Xanthomonas axonopodis biopolymer transport protein ExbB or XAC2085 SWALL:Q8PKS7 (EMBL:AE011844) (220 aa) fasta scores: E(): 2.7e-14, 28.35% id in 201 aa; putative transport related membrane protein 4408272 3288025 BF9343_3638 Bacteroides fragilis NCTC 9343 putative transport related membrane protein YP_213328.1 4407550 R 272559 CDS YP_213329.1 60683185 3288021 complement(4408272..4408985) 1 NC_003228.3 Similar to Porphyromonas gingivalis pyridoxal phosphate biosynthetic protein PdxJ or PG0630 SWALL:PDXJ_PORGI (SWALL:Q51843) (238 aa) fasta scores: E(): 2.7e-59, 64.83% id in 236 aa, and to Escherichia coli, and Escherichia coli O157:H7 pyridoxal phosphate biosynthetic protein PdxJ or B2564 or Z3845 or ECS3430 SWALL:PDXJ_ECOLI (SWALL:P24223) (242 aa) fasta scores: E(): 1e-24, 39.39% id in 231 aa; putative pyridoxine biosynthesis protein 4408985 3288021 BF9343_3639 Bacteroides fragilis NCTC 9343 putative pyridoxine biosynthesis protein YP_213329.1 4408272 R 272559 CDS YP_213330.1 60683186 3287998 4409118..4409990 1 NC_003228.3 Similar to Porphyromonas gingivalis probable inorganic polyphosphate/ATP-NAD kinase PpnK or Put or PG0629 SWALL:PPNK_PORGI (SWALL:Q51841) (288 aa) fasta scores: E(): 2.3e-43, 44.29% id in 289 aa, and to Escherichia coli, and Shigella flexneri probable inorganic polyphosphate/ATP-NAD kinase PpnK or B2615 or SF2674 or S2852 SWALL:PPNK_ECOLI (SWALL:P37768) (292 aa) fasta scores: E(): 3.4e-25, 33.33% id in 282 aa; putative inorganic polyphosphate/ATP-NAD kinase 4409990 3287998 BF9343_3640 Bacteroides fragilis NCTC 9343 putative inorganic polyphosphate/ATP-NAD kinase YP_213330.1 4409118 D 272559 CDS YP_213331.1 60683187 3288003 complement(4415643..4416005) 1 NC_003228.3 hypothetical protein 4416005 3288003 BF9343_3641 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213331.1 4415643 R 272559 CDS YP_213332.1 60683188 3287993 complement(4416357..4416602) 1 NC_003228.3 hypothetical protein 4416602 3287993 BF9343_3642 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213332.1 4416357 R 272559 CDS YP_213333.1 60683189 3287995 complement(4416623..4417105) 1 NC_003228.3 hypothetical protein 4417105 3287995 BF9343_3643 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213333.1 4416623 R 272559 CDS YP_213334.1 60683190 3288020 4417413..4417979 1 NC_003228.3 Similar to Bacteroides fragilis RNA polymerase ECF-type sigma factor SWALL:AAQ84479 (EMBL:AY372755) (186 aa) fasta scores: E(): 2e-11, 30% id in 180 aa, and to Bacillus subtilis RNA polymerase sigma factor SigW or BSU01730 SWALL:SIGW_BACSU (SWALL:Q45585) (187 aa) fasta scores: E(): 0.00018, 23.69% id in 173 aa; putative RNA polymerase sigma factor 4417979 3288020 BF9343_3644 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_213334.1 4417413 D 272559 CDS YP_213335.1 60683191 3287213 4418053..4419021 1 NC_003228.3 Similar to Pseudomonas syringae conserved hypothetical protein PSPTO2358 SWALL:Q883J9 (EMBL:AE016864) (342 aa) fasta scores: E(): 2.1e-09, 24.35% id in 308 aa, and to Nitrosomonas europaea putative transmembrane sensor NE0817 SWALL:Q82W78 (EMBL:BX321858) (334 aa) fasta scores: E(): 2.5e-08, 22.57% id in 319 aa; hypothetical protein 4419021 3287213 BF9343_3645 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213335.1 4418053 D 272559 CDS YP_213336.1 60683192 3287837 4419207..4422647 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3012 SWALL:Q8A3E2 (EMBL:AE016938) (1125 aa) fasta scores: E(): 7.8e-98, 31.04% id in 1166 aa, and to Bacteroides fragilis FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 5.7e-56, 29.83% id in 1200 aa; hypothetical protein 4422647 3287837 BF9343_3646 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213336.1 4419207 D 272559 CDS YP_213337.1 60683193 3287838 4422664..4424289 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0361 SWALL:Q8AAV3 (EMBL:AE016927) (601 aa) fasta scores: E(): 2.5e-17, 28.03% id in 610 aa, and to Microscilla sp. PRE1 MS107 SWALL:Q93PC2 (EMBL:AF339846) (572 aa) fasta scores: E(): 3e-11, 24.69% id in 567 aa; putative liporotein 4424289 3287838 BF9343_3647 Bacteroides fragilis NCTC 9343 putative liporotein YP_213337.1 4422664 D 272559 CDS YP_213338.1 60683194 3287839 4424327..4424701 1 NC_003228.3 putative lipoprotein 4424701 3287839 BF9343_3648 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213338.1 4424327 D 272559 CDS YP_213339.1 60683195 3287840 4424709..4426745 1 NC_003228.3 hypothetical protein 4426745 3287840 BF9343_3649 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213339.1 4424709 D 272559 CDS YP_213340.1 60683196 3287843 complement(4426841..4429033) 1 NC_003228.3 Partly similar to Bacteroides thetaiotaomicron putative transcriptional regulator BT0636 SWALL:Q8AA29 (EMBL:AE016928) (548 aa) fasta scores: E(): 4.5e-16, 31.98% id in 222 aa, and to Porphyromonas gingivalis W83 transporter, putative PG2185 SWALL:AAQ67132 (EMBL:AE017179) (438 aa) fasta scores: E(): 4.3e-14, 26.64% id in 319 aa; hypothetical protein 4429033 3287843 BF9343_3650 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213340.1 4426841 R 272559 CDS YP_213341.1 60683197 3287844 complement(4429037..4429411) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transcriptional regulator BT0812 SWALL:Q8A9K3 (EMBL:AE016929) (120 aa) fasta scores: E(): 7.8e-14, 38.13% id in 118 aa, and to Bacillus licheniformis penicillinase repressor BlaI or PenI SWALL:BLAI_BACLI (SWALL:P06555) (128 aa) fasta scores: E(): 3e-07, 29.13% id in 127 aa; putative antibiotic resistance-related regulatory protein 4429411 3287844 BF9343_3651 Bacteroides fragilis NCTC 9343 putative antibiotic resistance-related regulatory protein YP_213341.1 4429037 R 272559 CDS YP_213342.1 60683198 3287845 complement(4429626..4432913) 1 NC_003228.3 Similar to Prevotella sp. RS2 MdsD protein precursor SWALL:Q9L5V8 (EMBL:AF248951) (1073 aa) fasta scores: E(): 1.5e-142, 57.64% id in 1093 aa, and to Thermoplasma volcanium tricorn protease Tri or TV0915 or TVG0940548 SWALL:TRI_THEVO (SWALL:Q97A95) (1030 aa) fasta scores: E(): 1.2e-16, 21.73% id in 1104 aa; putative exported peptidase 4432913 3287845 BF9343_3652 Bacteroides fragilis NCTC 9343 putative exported peptidase YP_213342.1 4429626 R 272559 CDS YP_213343.1 60683199 3288052 complement(4433020..4433961) 1 NC_003228.3 Similar to Chloroflexus aurantiacus malate dehydrogenase Mdh SWALL:MDH_CHLAU (SWALL:P80040) (309 aa) fasta scores: E(): 1.3e-50, 47.55% id in 307 aa, and to Bacillus halodurans malate dehydrogenase Mdh or CitH or BH3158 SWALL:MDH_BACHD (SWALL:Q9K849) (314 aa) fasta scores: E(): 4.8e-49, 47.4% id in 308 aa; putative malate dehydrogenase 4433961 mdh 3288052 mdh Bacteroides fragilis NCTC 9343 putative malate dehydrogenase YP_213343.1 4433020 R 272559 CDS YP_213344.1 60683200 3287846 4434148..4435020 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3912 SWALL:Q8A0V9 (EMBL:AE016942) (290 aa) fasta scores: E(): 2.5e-75, 81.03% id in 290 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1387 SWALL:AAQ66448 (EMBL:AE017176) (308 aa) fasta scores: E(): 3e-27, 37.82% id in 304 aa; hypothetical protein 4435020 3287846 BF9343_3654 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213344.1 4434148 D 272559 CDS YP_213345.1 60683201 3287847 complement(4435143..4436084) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative anti-sigma factor BT3038 SWALL:Q8A3B6 (EMBL:AE016938) (346 aa) fasta scores: E(): 1.2e-42, 40.19% id in 316 aa, and to Bacteroides fragilis FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 5.2e-11, 28.92% id in 204 aa; hypothetical protein 4436084 3287847 BF9343_3655 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213345.1 4435143 R 272559 CDS YP_213346.1 60683202 3287848 complement(4436065..4436619) 1 NC_003228.3 Similar to Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 3.2e-07, 29.14% id in 175 aa, and to Vibrio vulnificus RNA polymerase sigma-70 factor VV11814 SWALL:Q8DBK3 (EMBL:AE016803) (186 aa) fasta scores: E(): 4.2e-05, 26.06% id in 165 aa; putative RNA polymerase sigma factor 4436619 3287848 BF9343_3656 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma factor YP_213346.1 4436065 R 272559 CDS YP_213347.1 60683203 3287849 complement(4436659..4439226) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG1006 SWALL:AAQ66128 (EMBL:AE017175) (894 aa) fasta scores: E(): 1.5e-06, 23.04% id in 881 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1042 SWALL:Q8A8X5 (EMBL:AE016930) (1097 aa) fasta scores: E(): 5.6e-06, 20.95% id in 668 aa; hypothetical protein 4439226 3287849 BF9343_3657 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213347.1 4436659 R 272559 CDS YP_213348.1 60683204 3287850 4439808..4441262 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 outer membrane efflux protein, putative PG0094 SWALL:AAQ65341 (EMBL:AE017172) (501 aa) fasta scores: E(): 6.9e-88, 60.4% id in 495 aa, and to Helicobacter pylori lipase-like protein HP1489 SWALL:O26022 (EMBL:AE000647) (510 aa) fasta scores: E(): 9.7e-12, 23.54% id in 463 aa; putative outer membrane protein 4441262 3287850 BF9343_3658 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213348.1 4439808 D 272559 CDS YP_213349.1 60683205 3287851 4441340..4442332 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 HlyD family secretion protein PG0093 SWALL:AAQ65340 (EMBL:AE017172) (331 aa) fasta scores: E(): 9.6e-79, 73.19% id in 332 aa, and to Vibrio parahaemolyticus conserved hypothetical protein VP1714 SWALL:Q87P04 (EMBL:AP005079) (326 aa) fasta scores: E(): 3.1e-40, 44.65% id in 318 aa; hypothetical protein 4442332 3287851 BF9343_3659 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213349.1 4441340 D 272559 CDS YP_213350.1 60683206 3287852 4442329..4443510 1 NC_003228.3 Similar to Helicobacter hepaticus hypothetical protein HH1319 SWALL:Q7VGK2 (EMBL:AE017148) (391 aa) fasta scores: E(): 4.1e-19, 23.48% id in 396 aa, and to Porphyromonas gingivalis W83 transporter, putative PG0091 SWALL:AAQ65338 (EMBL:AE017172) (405 aa) fasta scores: E(): 1.8e-12, 23.81% id in 399 aa; putative conserved transport-related membrane protein 4443510 3287852 BF9343_3660 Bacteroides fragilis NCTC 9343 putative conserved transport-related membrane protein YP_213350.1 4442329 D 272559 CDS YP_213351.1 60683207 3287853 4443510..4444760 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 transporter, putative PGg0091 SWALL:AAQ65338 (EMBL:AE017172) (405 aa) fasta scores: E(): 2.9e-104, 62% id in 400 aa, and to Vibrio vulnificus ABC-type multidrug transport system, permease component VV12691 SWALL:Q8D9B2 (EMBL:AE016806) (381 aa) fasta scores: E(): 4.4e-27, 29.19% id in 387 aa; putative transport-related membrane protein 4444760 3287853 BF9343_3661 Bacteroides fragilis NCTC 9343 putative transport-related membrane protein YP_213351.1 4443510 D 272559 CDS YP_213352.1 60683208 3287854 4444937..4446886 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron alpha-glucosidase BT2620 SWALL:Q8A4H9 (EMBL:AE016936) (649 aa) fasta scores: E(): 5.4e-151, 55.71% id in 648 aa, and to Xanthomonas axonopodis alpha-glucosidase SusB or XAC3313 SWALL:Q8PHE4 (EMBL:AE011977) (654 aa) fasta scores: E(): 9.3e-51, 30.16% id in 663 aa; hypothetical protein 4446886 3287854 BF9343_3662 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213352.1 4444937 D 272559 CDS YP_213353.1 60683209 3287855 4447008..4447715 1 NC_003228.3 Similar to Bacteroides fragilis sialate O-acetylesterase EstA SWALL:Q84IE1 (EMBL:AB102772) (220 aa) fasta scores: E(): 5.4e-08, 27.23% id in 235 aa, and to Rhodopirellula baltica probable platelet-activating factor acetylhydrolase IB gamma subunit Pa1g or RB1527 SWALL:Q7UX66 (EMBL:BX294135) (259 aa) fasta scores: E(): 7.5e-07, 26.31% id in 209 aa; putative acylhydrolase 4447715 3287855 BF9343_3663 Bacteroides fragilis NCTC 9343 putative acylhydrolase YP_213353.1 4447008 D 272559 CDS YP_213354.1 60683210 3287857 4447736..4448485 1 NC_003228.3 hypothetical protein 4448485 3287857 BF9343_3664 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213354.1 4447736 D 272559 CDS YP_213355.1 60683211 3287858 4448686..4449051 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 transcriptional regulator, putative PG2186 SWALL:AAQ67133 (EMBL:AE017179) (111 aa) fasta scores: E(): 2.8e-17, 50.45% id in 109 aa, and to Thermoanaerobacter tengcongensis predicted transcriptional regulator TTE1078 SWALL:Q8RAW1 (EMBL:AE013071) (124 aa) fasta scores: E(): 1.5e-05, 29.16% id in 120 aa; hypothetical protein 4449051 3287858 BF9343_3665 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213355.1 4448686 D 272559 CDS YP_213356.1 60683212 3287856 4449072..4450805 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TonB BT3898 SWALL:Q8A0X3 (EMBL:AE016942) (609 aa) fasta scores: E(): 1.9e-86, 56.15% id in 609 aa, and to Porphyromonas gingivalis W83 transporter, putative PG2185 SWALL:AAQ67132 (EMBL:AE017179) (438 aa) fasta scores: E(): 8.1e-27, 34.77% id in 463 aa; hypothetical protein 4450805 3287856 BF9343_3666 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213356.1 4449072 D 272559 CDS YP_213357.1 60683213 3287860 4450848..4452749 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative thiol:disulfide interchange protein DsbE BT3897 SWALL:Q8A0X4 (EMBL:AE016942) (634 aa) fasta scores: E(): 2.9e-110, 46.84% id in 634 aa, and the C-terminal region to Treponema pallidum thioredoxin, putative TP0100 SWALL:O83138 (EMBL:AE001194) (200 aa) fasta scores: E(): 2.6e-05, 27.1% id in 166 aa; putative exported thioredoxin 4452749 3287860 BF9343_3667 Bacteroides fragilis NCTC 9343 putative exported thioredoxin YP_213357.1 4450848 D 272559 CDS YP_213358.1 60683214 3287861 complement(4452840..4453946) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 ATP-binding protein, Mrp/Nbp35 family Mrp or PG0959 SWALL:AAQ66089 (EMBL:AE017175) (372 aa) fasta scores: E(): 2.9e-93, 69.91% id in 369 aa, and to Anabaena sp. hypothetical protein ALR0652 SWALL:Q8YZ35 (EMBL:AP003583) (356 aa) fasta scores: E(): 3e-48, 42.57% id in 350 aa; hypothetical protein 4453946 3287861 BF9343_3668 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213358.1 4452840 R 272559 CDS YP_213359.1 60683215 3287859 complement(4453955..4454680) 1 NC_003228.3 Similar to Clostridium acetobutylicum tRNA (guanine-N(7)-)-methyltransferase CAC2627 SWALL:TRMB_CLOAB (SWALL:Q97FU9) (211 aa) fasta scores: E(): 7.9e-20, 34.15% id in 202 aa, and to Lactococcus lactis tRNA (guanine-N(7)-)-methyltransferase YhfE or LL0749 SWALL:TRMB_LACLA (SWALL:Q9CHI2) (217 aa) fasta scores: E(): 5.4e-18, 31.88% id in 207 aa; putative tRNA methyltransferase 4454680 3287859 BF9343_3669 Bacteroides fragilis NCTC 9343 putative tRNA methyltransferase YP_213359.1 4453955 R 272559 CDS YP_213360.1 60683216 3287863 complement(4454723..4455529) 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis metal-dependent hydrolases of the beta-lactamase superfamily II TTE1889 SWALL:Q8R8V2 (EMBL:AE013140) (272 aa) fasta scores: E(): 1.8e-31, 34.98% id in 263 aa, and to Salmonella typhi hypothetical protein STY3078 or T2851 SWALL:Q8Z457 (EMBL:AL627276) (265 aa) fasta scores: E(): 1.3e-19, 34.38% id in 253 aa; putative hydrolase 4455529 3287863 BF9343_3670 Bacteroides fragilis NCTC 9343 putative hydrolase YP_213360.1 4454723 R 272559 CDS YP_213361.1 60683217 3287864 complement(4455541..4456560) 1 NC_003228.3 Similar to Lactobacillus plantarum branched-chain amino acid aminotransferase BcaT or LP_2390 SWALL:Q88US5 (EMBL:AL935259) (342 aa) fasta scores: E(): 5.2e-66, 50.73% id in 339 aa, and to Bacillus subtilis putative branched-chain amino acid aminotransferase YwaA or IPA-0R or BSU38550 SWALL:ILVE_BACSU (SWALL:P39576) (362 aa) fasta scores: E(): 3.5e-34, 35.08% id in 342 aa; putative branched-chain amino acid aminotransferase 4456560 3287864 BF9343_3671 Bacteroides fragilis NCTC 9343 putative branched-chain amino acid aminotransferase YP_213361.1 4455541 R 272559 CDS YP_213362.1 60683218 3287862 complement(4456606..4456818) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hydrolase PG1433 SWALL:AAQ66486 (EMBL:AE017177) (71 aa) fasta scores: E(): 0.0011, 44.82% id in 58 aa, and to Listeria innocua probable exodeoxyribonuclease VII small subunit XseB or LIN1399 SWALL:EX7S_LISIN (SWALL:Q92BZ2) (75 aa) fasta scores: E(): 2.5, 29.03% id in 62 aa; putative exodeoxyribonuclease VII small subunit 4456818 3287862 BF9343_3672 Bacteroides fragilis NCTC 9343 putative exodeoxyribonuclease VII small subunit YP_213362.1 4456606 R 272559 CDS YP_213363.1 60683219 3287866 complement(4456914..4458146) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 exodeoxyribonuclease VII, large subunit XseA or PG1128 SWALL:AAQ66236 (EMBL:AE017175) (460 aa) fasta scores: E(): 3.9e-50, 39.69% id in 451 aa, and to Escherichia coli exodeoxyribonuclease VII large subunit XseA or B2509 SWALL:EX7L_ECOLI (SWALL:P04994) (456 aa) fasta scores: E(): 7.6e-17, 27.53% id in 454 aa; putative exodeoxyribonuclease VII large subunit 4458146 3287866 BF9343_3673 Bacteroides fragilis NCTC 9343 putative exodeoxyribonuclease VII large subunit YP_213363.1 4456914 R 272559 CDS YP_213364.1 60683220 3287867 complement(4458150..4459505) 1 NC_003228.3 Similar to Streptomyces coelicolor putative secreted peptidase SCO7188 or SC8A11.16c SWALL:Q9FBZ4 (EMBL:AL939130) (1239 aa) fasta scores: E(): 2.4e-07, 28.53% id in 431 aa, and to Deinococcus radiodurans serine protease, subtilase family DR1937 SWALL:Q9RT31 (EMBL:AE002032) (400 aa) fasta scores: E(): 9.5e-06, 26.47% id in 374 aa; putative exported serine protease, subtilase family 4459505 3287867 BF9343_3674 Bacteroides fragilis NCTC 9343 putative exported serine protease, subtilase family YP_213364.1 4458150 R 272559 CDS YP_213365.1 60683221 3287865 complement(4459533..4460621) 1 NC_003228.3 Similar to Clostridium perfringens probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU or CPE1783 SWALL:TRMU_CLOPE (SWALL:Q8XJH3) (359 aa) fasta scores: E(): 1.1e-42, 40.11% id in 359 aa, and to Escherichia coli tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU or AsuE or MnmA or B1133 SWALL:TRMU_ECOLI (SWALL:P25745) (368 aa) fasta scores: E(): 3.8e-33, 36.48% id in 370 aa; putative tRNA methyltransferase 4460621 3287865 BF9343_3675 Bacteroides fragilis NCTC 9343 putative tRNA methyltransferase YP_213365.1 4459533 R 272559 CDS YP_213366.1 60683222 3287869 4461372..4461632 1 NC_003228.3 hypothetical protein 4461632 3287869 BF9343_3676 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213366.1 4461372 D 272559 CDS YP_213367.1 60683223 3287870 4461569..4462429 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3886 SWALL:Q8A0Y5 (EMBL:AE016942) (292 aa) fasta scores: E(): 7.8e-88, 73.05% id in 282 aa; hypothetical protein 4462429 3287870 BF9343_3677 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213367.1 4461569 D 272559 CDS YP_213368.1 60683224 3287868 complement(4462426..4463436) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative phosphohydrolase, ICC family BT3885 SWALL:Q8A0Y6 (EMBL:AE016942) (335 aa) fasta scores: E(): 1.5e-104, 77.08% id in 336 aa, and to Clostridium acetobutylicum predicted phosphohydrolase, ICC family CAC2806 SWALL:Q97FD4 (EMBL:AE007778) (317 aa) fasta scores: E(): 6.2e-25, 35.8% id in 324 aa. Note: Also similar to BF1206 (329 aa) fasta scores: E(): 4.2e-76, 59.036% identity in 332 aa overlap; hypothetical protein 4463436 3287868 BF9343_3678 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213368.1 4462426 R 272559 CDS YP_213369.1 60683225 3287881 complement(4463465..4463944) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF or MecS or B2746 or Z4054 or ECS3600 or SF2769 or S2962 SWALL:ISPF_ECOLI (SWALL:P36663) (159 aa) fasta scores: E(): 1.2e-25, 50% id in 154 aa, and to Bacillus subtilis 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF or BSU00910 SWALL:ISPF_BACSU (SWALL:Q06756) (158 aa) fasta scores: E(): 1.3e-29, 56.12% id in 155 aa; putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4463944 ispF 3287881 ispF Bacteroides fragilis NCTC 9343 putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_213369.1 4463465 R 272559 CDS YP_213370.1 60683226 3287872 complement(4463983..4464597) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 fumarylacetoacetate hydrolase family protein PG0025 SWALL:AAQ65280 (EMBL:AE017172) (219 aa) fasta scores: E(): 2.2e-45, 60% id in 220 aa, and to Escherichia coli protein YcgM or B1180 SWALL:YCGM_ECOLI (SWALL:P76004) (219 aa) fasta scores: E(): 1.1e-25, 39.21% id in 204 aa; putative hydrolase 4464597 3287872 BF9343_3680 Bacteroides fragilis NCTC 9343 putative hydrolase YP_213370.1 4463983 R 272559 CDS YP_213371.1 60683227 3287874 complement(4464601..4465263) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 DNA-binding protein, putative PG0024 SWALL:AAQ65279 (EMBL:AE017172) (218 aa) fasta scores: E(): 8.6e-50, 64.85% id in 202 aa, and to Bacillus subtilis hypothetical protein YdiH SWALL:O05521 (EMBL:D88802) (215 aa) fasta scores: E(): 6.8e-23, 37.68% id in 199 aa; hypothetical protein 4465263 3287874 BF9343_3681 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213371.1 4464601 R 272559 CDS YP_213372.1 60683228 3287871 4465440..4465790 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 translation initation factor SUI1, putative PG0248 SWALL:AAQ65473 (EMBL:AE017172) (110 aa) fasta scores: E(): 3.1e-20, 59.43% id in 106 aa, and to Yersinia pestis translation initiation factor SUI1 family protein YPO2228 or Y2070 SWALL:Q8ZEE5 (EMBL:AJ414151) (108 aa) fasta scores: E(): 3.2e-07, 38.53% id in 109 aa; putative translation initation factor 4465790 3287871 BF9343_3682 Bacteroides fragilis NCTC 9343 putative translation initation factor YP_213372.1 4465440 D 272559 CDS YP_213373.1 60683229 3285753 complement(4465980..4466972) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri elongation factor TS Tsf or B0170 or C0206 or Z0181 or ECS0172 or SF0160 or S0163 SWALL:EFTS_ECOLI (SWALL:P02997) (282 aa) fasta scores: E(): 5.7e-14, 34.22% id in 263 aa, and to Bacillus subtilis elongation factor TS Tsf or BSU16500 SWALL:EFTS_BACSU (SWALL:P80700) (292 aa) fasta scores: E(): 8.2e-21, 34.66% id in 300 aa; putative elongation factor TS 4466972 tsf 3285753 tsf Bacteroides fragilis NCTC 9343 putative elongation factor TS YP_213373.1 4465980 R 272559 CDS YP_213374.1 60683230 3288335 complement(4467096..4467932) 1 NC_003228.3 Similar to Bacillus subtilis 30S ribosomal protein S2 RpsB or BSU16490 SWALL:RS2_BACSU (SWALL:P21464) (245 aa) fasta scores: E(): 3.8e-39, 50.86% id in 232 aa, and to Chlorobium tepidum 30S ribosomal protein S2 RpsB or CT1781 SWALL:RS2_CHLTE (SWALL:Q8KBK6) (249 aa) fasta scores: E(): 4.2e-45, 49.39% id in 247 aa; putative 30S ribosomal protein S2 4467932 rpsB 3288335 rpsB Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S2 YP_213374.1 4467096 R 272559 CDS YP_213375.1 60683231 3288051 complement(4468053..4468439) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 30S ribosomal protein S9 RpsI or B3230 or C3984 or Z4588 or ECS4103 SWALL:RS9_ECOLI (SWALL:P02363) (129 aa) fasta scores: E(): 3.9e-18, 50.41% id in 121 aa, and to Neisseria meningitidis 30S ribosomal protein S9 RpsI or NMA0379 or NMB2056 SWALL:RS9_NEIMA (SWALL:Q9JQZ9) (130 aa) fasta scores: E(): 4e-20, 56.19% id in 121 aa; putative 30S ribosomal protein S9 4468439 rpsI 3288051 rpsI Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S9 YP_213375.1 4468053 R 272559 CDS YP_213376.1 60683232 3288868 complement(4468446..4468907) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L13 SWALL:RL13_ECOLI (SWALL:P02410) (142 aa) fasta scores: E(): 4.7e-24, 48.61% id in 144 aa, and to Porphyromonas gingivalis W83 ribosomal protein L13 RplM or PG0375 SWALL:AAQ65582 (EMBL:AE017173) (151 aa) fasta scores: E(): 1.2e-45, 76.47% id in 153 aa; putative 50S ribosomal protein L13 4468907 rplM 3288868 rplM Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L13 YP_213376.1 4468446 R 272559 CDS YP_213377.1 60683233 3287877 4468926..4469234 1 NC_003228.3 hypothetical protein 4469234 3287877 BF9343_3687 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213377.1 4468926 D 272559 CDS YP_213378.1 60683234 3287878 complement(4469241..4469729) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3874 SWALL:Q8A0Z7 (EMBL:AE016942) (163 aa) fasta scores: E(): 4.3e-50, 79.75% id in 163 aa; hypothetical protein 4469729 3287878 BF9343_3688 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213378.1 4469241 R 272559 CDS YP_213379.1 60683235 3288983 complement(4469887..4471290) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri asparaginyl-tRNA synthetase AsnS or Tss or B0930 or C1072 or SF0927 or S0991 SWALL:SYN_ECOLI (SWALL:P17242) (465 aa) fasta scores: E(): 8.6e-104, 55.65% id in 469 aa, and to Porphyromonas gingivalis W83 asparaginyl-tRNA synthetase AsnS or PG1121 SWALL:AAQ66230 (EMBL:AE017175) (469 aa) fasta scores: E(): 2e-145, 73.87% id in 467 aa; asparaginyl-trna synthetase 4471290 asnS 3288983 asnS Bacteroides fragilis NCTC 9343 asparaginyl-trna synthetase YP_213379.1 4469887 R 272559 CDS YP_213380.1 60683236 3287876 complement(4471397..4472797) 1 NC_003228.3 Similar in its full length to Bacteroides thetaiotaomicron ribosomal large subunit pseudouridine synthase B BT3872 SWALL:Q8A0Z9 (EMBL:AE016942) (496 aa) fasta scores: E(): 8e-109, 81.34% id in 504 aa, in its N-terminal region to Bordetella bronchiseptica putative ATP-dependent RNA helicase BB0209 SWALL:Q7WQW6 (EMBL:BX640437) blast scores: E(): 2e-28, score: 322 53% id, and in its C-terminal region to Bacillus subtilis ribosomal large subunit pseudouridine synthase B RluB or BSU23160 SWALL:RLUB_BACSU (SWALL:P35159) (229 aa) fasta scores: E(): 1.6e-22, 41.96% id in 224 aa; putative ribosomal large subunit pseudouridine synthase 4472797 3287876 BF9343_3690 Bacteroides fragilis NCTC 9343 putative ribosomal large subunit pseudouridine synthase YP_213380.1 4471397 R 272559 CDS YP_213381.1 60683237 3289322 complement(4472879..4474225) 1 NC_003228.3 Similar to Escherichia coli, and Escherichia coli O6 adenylosuccinate lyase PurB or B1131 or C1510 SWALL:PUR8_ECOLI (SWALL:P25739) (456 aa) fasta scores: E(): 6.1e-83, 50.67% id in 448 aa, and to Porphyromonas gingivalis W83 adenylosuccinate lyase PurB or PG1123 SWALL:AAQ66231 (EMBL:AE017175) (447 aa) fasta scores: E(): 2.3e-118, 68.91% id in 444 aa; putative adenylosuccinate lyase 4474225 purB 3289322 purB Bacteroides fragilis NCTC 9343 putative adenylosuccinate lyase YP_213381.1 4472879 R 272559 CDS YP_213382.1 60683238 3287887 complement(4474447..4476333) 1 NC_003228.3 Similar to Xanthomonas manihotis beta-galactosidase precursor Bga SWALL:BGAL_XANMN (SWALL:P48982) (598 aa) fasta scores: E(): 1.3e-68, 39.79% id in 598 aa, and to Xylella fastidiosa beta-galactosidase XF0840 SWALL:Q9PF38 (EMBL:AE003923) (612 aa) fasta scores: E(): 4.6e-63, 36.89% id in 618 aa; putative exported beta-galactosidase 4476333 3287887 BF9343_3692 Bacteroides fragilis NCTC 9343 putative exported beta-galactosidase YP_213382.1 4474447 R 272559 CDS YP_213383.1 60683239 3289202 complement(4477001..4477552) 1 NC_003228.3 Similar to Escherichia coli maltose O-acetyltransferase Maa or B0459 SWALL:MAA_ECOLI (SWALL:P77791) (182 aa) fasta scores: E(): 3.2e-22, 43.33% id in 180 aa, and to Bacillus subtilis probable maltose O-acetyltransferase Maa or BSU40850 SWALL:MAA_BACSU (SWALL:P37515) (184 aa) fasta scores: E(): 7.8e-28, 46.92% id in 179 aa; putative maltose O-acetyltransferase 4477552 maa 3289202 maa Bacteroides fragilis NCTC 9343 putative maltose O-acetyltransferase YP_213383.1 4477001 R 272559 CDS YP_213384.1 60683240 3287888 complement(4477559..4478338) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 YaaA protein or PG1544 SWALL:AAQ66582 (EMBL:AE017177) (256 aa) fasta scores: E(): 3.2e-46, 49.8% id in 253 aa, and to Escherichia coli, and Shigella flexneri UPF0246 protein YaaA or B0006 or SF0006 or S0006 SWALL:YAAA_ECOLI (SWALL:P11288) (258 aa) fasta scores: E(): 4.9e-25, 34.64% id in 254 aa; hypothetical protein 4478338 3287888 BF9343_3694 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213384.1 4477559 R 272559 CDS YP_213385.1 60683241 3287879 4478454..4480673 1 NC_003228.3 Similar to Streptococcus pyogenes putative hyaluronidase Hyl or SPYM18_1606 SWALL:Q8P022 (EMBL:AE010073) (564 aa) fasta scores: E(): 2e-29, 34.55% id in 382 aa, and to the N-terminal region of Clostridium perfringens hyaluronoglucosaminidase precursor NagH or CPE0191 SWALL:NAGH_CLOPE (SWALL:P26831) (1628 aa) fasta scores: E(): 1.1e-18, 25.74% id in 742 aa; putative exported hyaluronidase 4480673 3287879 BF9343_3695 Bacteroides fragilis NCTC 9343 putative exported hyaluronidase YP_213385.1 4478454 D 272559 CDS YP_213386.1 60683242 3289062 complement(4480872..4481255) 1 NC_003228.3 hypothetical protein 4481255 aapH 3289062 aapH Bacteroides fragilis NCTC 9343 hypothetical protein YP_213386.1 4480872 R 272559 CDS YP_213387.1 60683243 3289095 complement(4481270..4482928) 1 NC_003228.3 hypothetical protein 4482928 aapG 3289095 aapG Bacteroides fragilis NCTC 9343 hypothetical protein YP_213387.1 4481270 R 272559 CDS YP_213388.1 60683244 3289046 complement(4482962..4485451) 1 NC_003228.3 hypothetical protein 4485451 aapF 3289046 aapF Bacteroides fragilis NCTC 9343 hypothetical protein YP_213388.1 4482962 R 272559 CDS YP_213389.1 60683245 3289083 complement(4485537..4487999) 1 NC_003228.3 putative outer membrane protein 4487999 aapE 3289083 aapE Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213389.1 4485537 R 272559 CDS YP_213390.1 60683246 3289074 complement(4488023..4489873) 1 NC_003228.3 Only significant similarity to Porphyromonas gingivalis W83 OmpA family protein PG1058 SWALL:AAQ66173 (EMBL:AE017175) (672 aa) fasta scores: E(): 6.7e-08, 25.66% id in 639 aa; hypothetical protein 4489873 aapD 3289074 aapD Bacteroides fragilis NCTC 9343 hypothetical protein YP_213390.1 4488023 R 272559 CDS YP_213391.1 60683247 3289076 complement(4489898..4490494) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1066 SWALL:Q8A8V1 (EMBL:AE016930) (189 aa) fasta scores: E(): 7e-11, 29.35% id in 201 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2130 SWALL:AAQ67085 (EMBL:AE017179) (193 aa) fasta scores: E(): 1.8e-10, 28.9% id in 173 aa; hypothetical protein 4490494 aapC 3289076 aapC Bacteroides fragilis NCTC 9343 hypothetical protein YP_213391.1 4489898 R 272559 CDS YP_213392.1 60683248 3289075 complement(4490524..4491435) 1 NC_003228.3 hypothetical protein 4491435 aapB 3289075 aapB Bacteroides fragilis NCTC 9343 hypothetical protein YP_213392.1 4490524 R 272559 CDS YP_213393.1 60683249 3289052 complement(4491545..4492798) 1 NC_003228.3 putative lipoprotein 4492798 aapA 3289052 aapA Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213393.1 4491545 R 272559 CDS YP_213394.1 60683250 3288905 complement(4493192..4494136) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron integrase protein BT4479 SWALL:Q89Z98 (EMBL:AE016945) (305 aa) fasta scores: E(): 2.1e-45, 44.1% id in 297 aa, and to Rhodopirellula baltica integrase/recombinase RB6271 SWALL:Q7UQK2 (EMBL:BX294143) (325 aa) fasta scores: E(): 0.00017, 24.63% id in 276 aa; tyrosine site-specific recombinase 4494136 tsr15 3288905 tsr15 Bacteroides fragilis NCTC 9343 tyrosine site-specific recombinase YP_213394.1 4493192 R 272559 CDS YP_213395.1 60683251 3287890 complement(4494352..4494834) 1 NC_003228.3 Similar to Chlamydia trachomatis hypothetical protein CT276 SWALL:O84278 (EMBL:AE001300) (194 aa) fasta scores: E(): 2.1e-06, 29.46% id in 112 aa, and to Nitrosomonas europaea hypothetical protein NE1480 SWALL:Q82UK4 (EMBL:BX321861) (143 aa) fasta scores: E(): 6.8e-05, 30.88% id in 136 aa; hypothetical protein 4494834 3287890 BF9343_3705 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213395.1 4494352 R 272559 CDS YP_213396.1 60683252 3289265 complement(4494980..4498201) 1 NC_003228.3 Similar to Escherichia coli carbamoyl-phosphate synthase large chain CarB or PyrA or B0033 SWALL:CARB_ECOLI (SWALL:P00968) (1072 aa) fasta scores: E(): 4.2e-131, 39.49% id in 1061 aa, and to Porphyromonas gingivalis W83 carbamoyl-phosphate synthase, large subunit CarB or PG0530 SWALL:AAQ65723 (EMBL:AE017173) (1075 aa) fasta scores: E(): 0, 67.5% id in 1074 aa. Note: Possible CDS duplication as also highly similar to BF2657 (1077 aa) fasta scores: E(): 0, 66.202% identity in 1077 aa overlap; putative carbamoyl-phosphate synthase large chain 2 4498201 carB2 3289265 carB2 Bacteroides fragilis NCTC 9343 putative carbamoyl-phosphate synthase large chain 2 YP_213396.1 4494980 R 272559 CDS YP_213397.1 60683253 3285670 4498525..4499616 1 NC_003228.3 Similar to Escherichia coli tryptophanyl-tRNA synthetase TrpS or B3384 SWALL:SYW_ECOLI (SWALL:P00954) (334 aa) fasta scores: E(): 3.4e-23, 31.21% id in 346 aa, and to Lactococcus lactis tryptophanyl-tRNA synthetase TrpS or LL0066 SWALL:SYW_LACLA (SWALL:Q9CJD1) (341 aa) fasta scores: E(): 1.8e-80, 62.68% id in 343 aa; putative tryptophanyl-tRNA synthetase 4499616 trpS 3285670 trpS Bacteroides fragilis NCTC 9343 putative tryptophanyl-tRNA synthetase YP_213397.1 4498525 D 272559 CDS YP_213398.1 60683254 3289175 complement(4499723..4500910) 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis major outer membrane protein OmpA SWALL:Q9AES1 (EMBL:AY028459) (395 aa) fasta scores: E(): 2.9e-151, 100% id in 395 aa, and to Porphyromonas gingivalis outer membrane protein 41 precursor PG0695 SWALL:OM41_PORGI (SWALL:Q9S3R9) (391 aa) fasta scores: E(): 2.1e-18, 29.54% id in 413 aa; putative major outer membrane protein 4500910 ompA 3289175 ompA Bacteroides fragilis NCTC 9343 putative major outer membrane protein YP_213398.1 4499723 R 272559 CDS YP_213399.1 60683255 3287891 complement(4501080..4502399) 1 NC_003228.3 Similar to Pasteurella haemolytica leukotoxin secretion protein D LktD SWALL:HLYD_PASHA (SWALL:P16534) (478 aa) fasta scores: E(): 7.3e-11, 21.98% id in 423 aa, and to Actinobacillus pleuropneumoniae RTX-III toxin determinant D ApxIIID or ClyIIID or RtxD SWALL:RT3D_ACTPL (SWALL:Q08633) (477 aa) fasta scores: E(): 3.9e-08, 23.91% id in 460 aa, and to Escherichia coli hemolysin secretion protein D, plasmid HlyD SWALL:HLYD_ECOLI (SWALL:P06739) (478 aa) fasta scores: E(): 5.2e-08, 23.28% id in 378 aa; putative hemolysin secretion transport system membrane protein 4502399 3287891 BF9343_3709 Bacteroides fragilis NCTC 9343 putative hemolysin secretion transport system membrane protein YP_213399.1 4501080 R 272559 CDS YP_213400.1 60683256 3287889 complement(4502402..4504612) 1 NC_003228.3 Similar to Proteus vulgaris hemolysin secretion ATP-binding protein HlyB SWALL:HLYB_PROVU (SWALL:P11599) (707 aa) fasta scores: E(): 2.4e-61, 30.13% id in 720 aa, and to Escherichia coli hemolysin secretion ATP-binding protein, chromosomal HlyB SWALL:HLY2_ECOLI (SWALL:P10089) (707 aa) fasta scores: E(): 2.7e-59, 29.46% id in 723 aa; putative hemolysin secretion transport system ATP-binding protein 4504612 3287889 BF9343_3710 Bacteroides fragilis NCTC 9343 putative hemolysin secretion transport system ATP-binding protein YP_213400.1 4502402 R 272559 CDS YP_213401.1 60683257 3287893 complement(4504648..4505247) 1 NC_003228.3 hypothetical protein 4505247 3287893 BF9343_3711 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213401.1 4504648 R 272559 CDS YP_213402.1 60683258 3287894 complement(4505260..4505925) 1 NC_003228.3 hypothetical protein 4505925 3287894 BF9343_3712 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213402.1 4505260 R 272559 CDS YP_213403.1 60683259 3287892 complement(4505993..4506988) 1 NC_003228.3 Similar to Klebsiella pneumoniae glycosyltransferase SWALL:Q9XC92 (EMBL:AF146532) (329 aa) fasta scores: E(): 2.3e-24, 34.55% id in 272 aa, and to Escherichia coli putative glycosyl transferase YibD or B3615 SWALL:YIBD_ECOLI (SWALL:P11290) (344 aa) fasta scores: E(): 3.4e-19, 29% id in 300 aa; putative LPS biosynthesis-related glycosyltransferase 4506988 3287892 BF9343_3713 Bacteroides fragilis NCTC 9343 putative LPS biosynthesis-related glycosyltransferase YP_213403.1 4505993 R 272559 CDS YP_213404.1 60683260 3287896 complement(4506985..4507875) 1 NC_003228.3 Only similar to eukaryotic database entries such as Macaca mulatta Lewis alpha-3-fucosyltransferase Fut3'RH SWALL:Q8WNP0 (EMBL:AF345883) (372 aa) fasta scores: E(): 1.7e-17, 30.07% id in 286 aa, and Homo sapiens alpha-(1,3)-fucosyltransferase Fut6 or Fct3A SWALL:FUT6_HUMAN (SWALL:P51993) (359 aa) fasta scores: E(): 3.3e-16, 29.22% id in 308 aa; putative fucosyltransferase 4507875 3287896 BF9343_3714 Bacteroides fragilis NCTC 9343 putative fucosyltransferase YP_213404.1 4506985 R 272559 CDS YP_213405.1 60683261 3287897 complement(4507925..4510399) 1 NC_003228.3 hypothetical protein 4510399 3287897 BF9343_3715 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213405.1 4507925 R 272559 CDS YP_213406.1 60683262 3287899 complement(4511096..4512358) 1 NC_003228.3 hypothetical protein 4512358 3287899 BF9343_3717 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213406.1 4511096 R 272559 CDS YP_213407.1 60683263 3287900 complement(4512351..4513598) 1 NC_003228.3 Similar to Pseudomonas putida quinohemoprotein amine dehydrogenase unknown subunit SWALL:Q8VW84 (EMBL:AB063331) (476 aa) fasta scores: E(): 5.5e-08, 26.96% id in 356 aa, and to Escherichia coli hypothetical protein YdeM or B1497 SWALL:YDEM_ECOLI (SWALL:P76134) (385 aa) fasta scores: E(): 2e-07, 24.61% id in 394 aa; putative dehydrogenase 4513598 3287900 BF9343_3718 Bacteroides fragilis NCTC 9343 putative dehydrogenase YP_213407.1 4512351 R 272559 CDS YP_213408.1 60683264 3287898 complement(4513602..4514921) 1 NC_003228.3 Similar to Thermoanaerobacter tengcongensis arylsulfatase regulator AslB4 or TTE2746 SWALL:Q8R6P9 (EMBL:AE013213) (441 aa) fasta scores: E(): 2.4e-28, 26.72% id in 449 aa, and to Escherichia coli putative arylsulfatase regulatory protein AslB or AtsB or B3800 SWALL:ASLB_ECOLI (SWALL:P25550) (411 aa) fasta scores: E(): 0.00011, 20.61% id in 359 aa; putative regulatory protein 4514921 3287898 BF9343_3719 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_213408.1 4513602 R 272559 CDS YP_213409.1 60683265 3287905 complement(4514952..4516232) 1 NC_003228.3 hypothetical protein 4516232 3287905 BF9343_3720 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213409.1 4514952 R 272559 CDS YP_213410.1 60683266 3287907 complement(4516331..4516642) 1 NC_003228.3 No significant database matches. Note: Also similar to BF3825 (98 aa) fasta scores: E(): 4.6e-40, 90.526% identity in 95 aa overlap; hypothetical protein 4516642 3287907 BF9343_3721 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213410.1 4516331 R 272559 CDS YP_213411.1 60683267 3287904 complement(4516786..4518024) 1 NC_003228.3 hypothetical protein 4518024 3287904 BF9343_3722 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213411.1 4516786 R 272559 CDS YP_213412.1 60683268 3287909 complement(4518088..4518381) 1 NC_003228.3 No significant database matches. Note: Similar to BF3823 (104 aa) fasta scores: E(): 3e-39, 90.526% identity in 95 aa overlap; hypothetical protein 4518381 3287909 BF9343_3723 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213412.1 4518088 R 272559 CDS YP_213413.1 60683269 3287910 complement(4518660..4519889) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron glycosyltransferase BT4282 SWALL:Q89ZU2 (EMBL:AE016944) (408 aa) fasta scores: E(): 1.1e-13, 28.42% id in 394 aa, and to Clostridium acetobutylicum LPS glycosyltransferase CAC1053 SWALL:Q97K66 (EMBL:AE007621) (466 aa) fasta scores: E(): 5.9e-13, 25.7% id in 319 aa; putative glycosyltransferase 4519889 3287910 BF9343_3724 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_213413.1 4518660 R 272559 CDS YP_213414.1 60683270 3287908 complement(4519886..4520536) 1 NC_003228.3 hypothetical protein 4520536 3287908 BF9343_3725 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213414.1 4519886 R 272559 CDS YP_213415.1 60683271 3287913 complement(4520550..4521317) 1 NC_003228.3 hypothetical protein 4521317 3287913 BF9343_3726 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213415.1 4520550 R 272559 CDS YP_213416.1 60683272 3287914 complement(4521314..4521919) 1 NC_003228.3 hypothetical protein 4521919 3287914 BF9343_3727 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213416.1 4521314 R 272559 CDS YP_213417.1 60683273 3287911 complement(4521934..4522410) 1 NC_003228.3 hypothetical protein 4522410 3287911 BF9343_3728 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213417.1 4521934 R 272559 CDS YP_213418.1 60683274 3287917 complement(4522502..4524286) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0240 SWALL:Q8AB71 (EMBL:AE016926) (584 aa) fasta scores: E(): 3.7e-24, 25.79% id in 597 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3442 SWALL:Q8A264 (EMBL:AE016940) (563 aa) fasta scores: E(): 8.5e-17, 23.79% id in 601 aa; hypothetical protein 4524286 3287917 BF9343_3729 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213418.1 4522502 R 272559 CDS YP_213419.1 60683275 3287928 complement(4524293..4524445) 1 NC_003228.3 hypothetical protein 4524445 3287928 BF9343_3730 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213419.1 4524293 R 272559 CDS YP_213420.1 60683276 3287916 complement(4524684..4524965) 1 NC_003228.3 hypothetical protein 4524965 3287916 BF9343_3731 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213420.1 4524684 R 272559 CDS YP_213421.1 60683277 3287927 complement(4525006..4526226) 1 NC_003228.3 putative lipoprotein 4526226 3287927 BF9343_3732 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213421.1 4525006 R 272559 CDS YP_213422.1 60683278 3287929 complement(4526744..4526923) 1 NC_003228.3 hypothetical protein 4526923 3287929 BF9343_3733 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213422.1 4526744 R 272559 CDS YP_213423.1 60683279 3287930 complement(4526991..4528199) 1 NC_003228.3 hypothetical protein 4528199 3287930 BF9343_3734 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213423.1 4526991 R 272559 CDS YP_213424.1 60683280 3287932 complement(4528302..4529363) 1 NC_003228.3 hypothetical protein 4529363 3287932 BF9343_3735 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213424.1 4528302 R 272559 CDS YP_213425.1 60683281 3287933 complement(4529723..4530115) 1 NC_003228.3 hypothetical protein 4530115 3287933 BF9343_3736 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213425.1 4529723 R 272559 CDS YP_213426.1 60683282 3287931 4530338..4531567 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron integrase protein IntDOT SWALL:Q93L62 (EMBL:AJ311171) (411 aa) fasta scores: E(): 1.1e-55, 38.92% id in 411 aa, and to Porphyromonas gingivalis W83 integrase PG1113 SWALL:AAQ66223 (EMBL:AE017175) (407 aa) fasta scores: E(): 1.3e-55, 39.5% id in 400 aa, and to Bacteroides fragilis transposase BipH SWALL:Q9ZI85 (EMBL:AF038866) (410 aa) fasta scores: E(): 5.2e-48, 35.04% id in 408 aa; putative phage integrase 4531567 3287931 BF9343_3737 Bacteroides fragilis NCTC 9343 putative phage integrase YP_213426.1 4530338 D 272559 CDS YP_213427.1 60683283 3287935 complement(4531632..4531934) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron database entries such as conserved hypothetical protein BT0022 SWALL:Q8ABT8 (EMBL:AE016926) (96 aa) fasta scores: E(): 1.9e-13, 50.51% id in 97 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0075 SWALL:Q8ABN5 (EMBL:AE016926) (96 aa) fasta scores: E(): 2.8e-12, 48.45% id in 97 aa; hypothetical protein 4531934 3287935 BF9343_3738 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213427.1 4531632 R 272559 CDS YP_213428.1 60683284 3287936 complement(4531938..4532102) 1 NC_003228.3 Similar to parts of Bacteroides thetaiotaomicron conserved hypothetical protein BT3139 SWALL:Q8A316 (EMBL:AE016939) (102 aa) fasta scores: E(): 2.9e-08, 56.52% id in 46 aa, and to Porphyromonas gingivalis W83 conserved domain protein PG0546 SWALL:AAQ65738 (EMBL:AE017173) (70 aa) fasta scores: E(): 1e-06, 47.05% id in 51 aa, and to Bacteroides fragilis hypothetical protein SWALL:Q8RM73 (EMBL:AY053505) (119 aa) fasta scores: E(): 3.5e-05, 39.58% id in 48 aa; hypothetical protein 4532102 3287936 BF9343_3739 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213428.1 4531938 R 272559 CDS YP_213429.1 60683285 3287934 complement(4532103..4532294) 1 NC_003228.3 hypothetical protein 4532294 3287934 BF9343_3740 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213429.1 4532103 R 272559 CDS YP_213430.1 60683286 3287938 complement(4532418..4533197) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0020 SWALL:Q8ABU0 (EMBL:AE016926) (152 aa) fasta scores: E(): 1.2e-28, 58.86% id in 141 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0017 SWALL:Q8ABU3 (EMBL:AE016926) (315 aa) fasta scores: E(): 1.9e-05, 30.84% id in 214 aa; hypothetical protein 4533197 3287938 BF9343_3741 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213430.1 4532418 R 272559 CDS YP_213431.1 60683287 3287939 complement(4533213..4533533) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0019 SWALL:Q8ABU1 (EMBL:AE016926) (106 aa) fasta scores: E(): 7.8e-26, 65.09% id in 106 aa; hypothetical protein 4533533 3287939 BF9343_3742 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213431.1 4533213 R 272559 CDS YP_213432.1 60683288 3287937 complement(4533654..4534259) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0018 SWALL:Q8ABU2 (EMBL:AE016926) (238 aa) fasta scores: E(): 1.4e-51, 67.66% id in 201 aa; hypothetical protein 4534259 3287937 BF9343_3743 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213432.1 4533654 R 272559 CDS YP_213433.1 60683289 3287941 complement(4534260..4534445) 1 NC_003228.3 hypothetical protein 4534445 3287941 BF9343_3744 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213433.1 4534260 R 272559 CDS YP_213434.1 60683290 3287942 complement(4534447..4535352) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0017 SWALL:Q8ABU3 (EMBL:AE016926) (315 aa) fasta scores: E(): 3.2e-61, 59.3% id in 317 aa; hypothetical protein 4535352 3287942 BF9343_3745 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213434.1 4534447 R 272559 CDS YP_213435.1 60683291 3287940 complement(4535464..4536096) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT0016 SWALL:Q8ABU4 (EMBL:AE016926) (212 aa) fasta scores: E(): 5.9e-41, 61.5% id in 213 aa; hypothetical protein 4536096 3287940 BF9343_3746 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213435.1 4535464 R 272559 CDS YP_213436.1 60683292 3287945 complement(4536288..4537574) 1 NC_003228.3 Similar to Bacteroides fragilis RteB SWALL:Q9F5V2 (EMBL:AF303352) (440 aa) fasta scores: E(): 2.1e-62, 41.95% id in 429 aa, and to Escherichia coli transcriptional regulatory protein ZraR or HydG or B4004 SWALL:ZRAR_ECOLI (SWALL:P14375) (441 aa) fasta scores: E(): 1.2e-48, 40% id in 435 aa; putative regulatory protein 4537574 3287945 BF9343_3747 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_213436.1 4536288 R 272559 CDS YP_213437.1 60683293 3287946 complement(4537612..4538703) 1 NC_003228.3 Similar to Ralstonia solanacearum putative transport transmembrane protein RSP1598 or RS02155 SWALL:Q8XPP0 (EMBL:AL646086) (421 aa) fasta scores: E(): 8.7e-20, 26.41% id in 371 aa, and to Rhizobium meliloti nodulation protein NolF or RA0481 or SMA0876 SWALL:NOLF_RHIME (SWALL:P25196) (367 aa) fasta scores: E(): 5.2e-10, 23.39% id in 312 aa; hypothetical protein 4538703 3287946 BF9343_3748 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213437.1 4537612 R 272559 CDS YP_213438.1 60683294 3287943 complement(4538711..4541854) 1 NC_003228.3 Similar to Rhizobium meliloti nodulation protein precursor NolG or NolH or NolI or RA0480 or SMA0875 SWALL:NOLG_RHIME (SWALL:P25197) (1065 aa) fasta scores: E(): 1.3e-64, 27.25% id in 1053 aa, and to Porphyromonas gingivalis W83 AcrB/AcrD/AcrF family protein PG0540 SWALL:AAQ65732 (EMBL:AE017173) (1049 aa) fasta scores: E(): 1.3e-63, 25.45% id in 1045 aa; putative transport related membrane protein 4541854 3287943 BF9343_3749 Bacteroides fragilis NCTC 9343 putative transport related membrane protein YP_213438.1 4538711 R 272559 CDS YP_213439.1 60683295 3287948 complement(4541865..4542800) 1 NC_003228.3 putative outer membrane protein 4542800 3287948 BF9343_3750 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213439.1 4541865 R 272559 CDS YP_213440.1 60683296 3287949 complement(4542825..4543268) 1 NC_003228.3 hypothetical protein 4543268 3287949 BF9343_3751 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213440.1 4542825 R 272559 CDS YP_213441.1 60683297 3287947 complement(4543520..4544083) 1 NC_003228.3 putative regulatory protein 4544083 3287947 BF9343_3752 Bacteroides fragilis NCTC 9343 putative regulatory protein YP_213441.1 4543520 R 272559 CDS YP_213442.1 60683298 3285778 complement(4544113..4546581) 1 NC_003228.3 Full length similarity to Porphyromonas gingivalis W83 ferrous iron transport protein B FeoB-2 or PG1294 SWALL:AAQ66370 (EMBL:AE017176) (844 aa) fasta scores: E(): 8.8e-80, 50.73% id in 885 aa, C-terminal region similar to Escherichia coli ferrous iron transport protein B FeoB or B3409 SWALL:FEOB_ECOLI (SWALL:P33650) (773 aa) fasta scores: E(): 1.6e-40, 31.53% id in 777 aa, and N-terminal region to Methanosarcina mazei ferrous iron transport protein A MM2578 SWALL:Q8PTX9 (EMBL:AE013502) (82 aa) fasta scores: E(): 9.2e-06, 44.59% id in 74 aa; putative iron transport, fusion membrane protein 4546581 3285778 BF9343_3753 Bacteroides fragilis NCTC 9343 putative iron transport, fusion membrane protein YP_213442.1 4544113 R 272559 CDS YP_213443.1 60683299 3287952 complement(4546627..4547499) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 esterase, putative PG0425 SWALL:AAQ65625 (EMBL:AE017173) (256 aa) fasta scores: E(): 4.8e-11, 29.6% id in 250 aa, and to Pasteurella multocida esterase MesA SWALL:Q9EZ25 (EMBL:AF306495) (269 aa) fasta scores: E(): 9.9e-09, 26.62% id in 293 aa; putative exported esterase 4547499 3287952 BF9343_3754 Bacteroides fragilis NCTC 9343 putative exported esterase YP_213443.1 4546627 R 272559 CDS YP_213444.1 60683300 3287950 complement(4547512..4548657) 1 NC_003228.3 Similar to Bacillus subtilis acetylornithine aminotransferase ArgD or BSU11220 SWALL:ARGD_BACSU (SWALL:P36839) (385 aa) fasta scores: E(): 3.2e-42, 38.36% id in 378 aa, and to Escherichia coli acetylornithine/succinyldiaminopimelate aminotransferase ArgD or DapC or Dtu or B3359 SWALL:ARGD_ECOLI (SWALL:P18335) (405 aa) fasta scores: E(): 7.6e-38, 33.67% id in 392 aa; putative acetylornithine aminotransferase 4548657 3287950 BF9343_3755 Bacteroides fragilis NCTC 9343 putative acetylornithine aminotransferase YP_213444.1 4547512 R 272559 CDS YP_213445.1 60683301 3289140 complement(4548669..4549862) 1 NC_003228.3 Similar to Rhizobium leguminosarum aspartate aminotransferase AspC or AatA SWALL:AAT_RHILP (SWALL:O86459) (400 aa) fasta scores: E(): 3e-66, 48.85% id in 393 aa, and to Brucella suis aspartate aminotransferase AspC or BR1495 SWALL:Q8FZI6 (EMBL:AE014444) (400 aa) fasta scores: E(): 1.3e-69, 49.87% id in 393 aa; putative aspartate aminotransferase 4549862 aspC2 3289140 aspC2 Bacteroides fragilis NCTC 9343 putative aspartate aminotransferase YP_213445.1 4548669 R 272559 CDS YP_213446.1 60683302 3287951 complement(4549893..4550552) 1 NC_003228.3 Similar to Streptococcus mutans conserved hypothetical protein SMU.1254 SWALL:Q8DTS3 (EMBL:AE014961) (214 aa) fasta scores: E(): 2.2e-29, 42.92% id in 212 aa, and to Escherichia coli phosphoglycolate phosphatase Gph or B3385 SWALL:GPH_ECOLI (SWALL:P32662) (252 aa) fasta scores: E(): 8.6e-05, 25.23% id in 214 aa; putative hydrolase 4550552 3287951 BF9343_3757 Bacteroides fragilis NCTC 9343 putative hydrolase YP_213446.1 4549893 R 272559 CDS YP_213447.1 60683303 3285779 complement(4550648..4551520) 1 NC_003228.3 Similar to Desulfovibrio vulgaris pyridoxal kinase PdxK SWALL:Q9FAA3 (EMBL:AB049010) (297 aa) fasta scores: E(): 1.3e-61, 56.59% id in 288 aa, and to Escherichia coli pyridoxine kinase PdxK or B2418 SWALL:PDXK_ECOLI (SWALL:P40191) (283 aa) fasta scores: E(): 7e-12, 28.3% id in 265 aa; putative pyridoxal kinase 4551520 3285779 BF9343_3758 Bacteroides fragilis NCTC 9343 putative pyridoxal kinase YP_213447.1 4550648 R 272559 CDS YP_213448.1 60683304 3285102 complement(4551526..4552422) 1 NC_003228.3 Similar to Bacillus subtilis dihydrodipicolinate synthase DapA or BSU16770 SWALL:DAPA_BACSU (SWALL:Q04796) (290 aa) fasta scores: E(): 7.9e-45, 45.96% id in 285 aa, and to Porphyromonas gingivalis W83 dihydrodipicolinate synthase DapA or PG2052 SWALL:AAQ67015 (EMBL:AE017179) (289 aa) fasta scores: E(): 6.9e-51, 51.04% id in 286 aa, and to Escherichia coli, and Shigella flexneri dihydrodipicolinate synthase DapA or B2478 or SF2521 or S2671 SWALL:DAPA_ECOLI (SWALL:P05640) (292 aa) fasta scores: E(): 4.6e-36, 39.86% id in 286 aa; putative dihydrodipicolinate synthase 4552422 dapA1 3285102 dapA1 Bacteroides fragilis NCTC 9343 putative dihydrodipicolinate synthase YP_213448.1 4551526 R 272559 CDS YP_213449.1 60683305 3287953 complement(4552440..4554950) 1 NC_003228.3 Similar to Bacillus subtilis potential copper-transporting ATPase YvgX or BSU33500 SWALL:ATCU_BACSU (SWALL:O32220) (803 aa) fasta scores: E(): 5.2e-100, 44.71% id in 747 aa, and to Escherichia coli copper-transporting P-type ATPase CopA or B0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 6e-98, 42.35% id in 732 aa; putative copper transport-related membrane protein 4554950 3287953 BF9343_3760 Bacteroides fragilis NCTC 9343 putative copper transport-related membrane protein YP_213449.1 4552440 R 272559 CDS YP_213450.1 60683306 3287954 4555338..4555847 1 NC_003228.3 hypothetical protein 4555847 3287954 BF9343_3761 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213450.1 4555338 D 272559 CDS YP_213451.1 60683307 3287955 4555879..4556892 1 NC_003228.3 Similar in its C-terminal region to Bacteroides sp. 139 hypothetical protein SWALL:Q7WSZ7 (EMBL:AJ514254) (155 aa) fasta scores: E(): 2.9e-24, 51.57% id in 159 aa, in its N-terminal region to Bacteroides sp. 139 hypothetical protein SWALL:Q7WSZ9 (EMBL:AJ514254) (100 aa) fasta scores: E(): 6.2e-17, 56.56% id in 99 aa, and in its central region to Bacteroides sp. 139 hypothetical protein SWALL:Q7WSZ8 (EMBL:AJ514254) (73 aa) fasta scores: E(): 1.2e-05, 44.11% id in 68 aa; conserved hypothetical fusion protein 4556892 3287955 BF9343_3762 Bacteroides fragilis NCTC 9343 conserved hypothetical fusion protein YP_213451.1 4555879 D 272559 CDS YP_213452.1 60683308 3287956 4556975..4558879 1 NC_003228.3 Similar in its N-terminal region to Streptomyces coelicolor ParB SWALL:Q9RFM2 (EMBL:AF187159) (368 aa) fasta scores: E(): 6e-13, 32.93% id in 249 aa, and to Bacillus subtilis stage 0 sporulation protein J Spo0J or BSU40960 SWALL:SP0J_BACSU (SWALL:P26497) (282 aa) fasta scores: E(): 3e-11, 35.15% id in 165 aa. Note: C-terminal region does not present any similarities to database entries; hypothetical protein 4558879 3287956 BF9343_3763 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213452.1 4556975 D 272559 CDS YP_213453.1 60683309 3287957 4559290..4559529 1 NC_003228.3 hypothetical protein 4559529 3287957 BF9343_3764 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213453.1 4559290 D 272559 CDS YP_213454.1 60683310 3287960 complement(4561275..4561775) 1 NC_003228.3 hypothetical protein 4561775 3287960 BF9343_3767 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213454.1 4561275 R 272559 CDS YP_213455.1 60683311 3287961 complement(4561776..4562144) 1 NC_003228.3 hypothetical protein 4562144 3287961 BF9343_3768 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213455.1 4561776 R 272559 CDS YP_213456.1 60683312 3285671 complement(4562119..4562679) 1 NC_003228.3 hypothetical protein 4562679 3285671 BF9343_3769 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213456.1 4562119 R 272559 CDS YP_213457.1 60683313 3287962 complement(4564213..4565133) 1 NC_003228.3 putative lipoprotein 4565133 3287962 BF9343_3772 Bacteroides fragilis NCTC 9343 putative lipoprotein YP_213457.1 4564213 R 272559 CDS YP_213458.1 60683314 3287964 complement(4565158..4566423) 1 NC_003228.3 No significant database matches. Note: Also similar to BF3878 (408 aa) fasta scores: E(): 9.3e-86, 57.494% identity in 407 aa overlap; hypothetical protein 4566423 3287964 BF9343_3773 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213458.1 4565158 R 272559 CDS YP_213459.1 60683315 3287968 complement(4566655..4567878) 1 NC_003228.3 No significant database matches. Note: Also similar to BF3877 (422 aa) fasta scores: E(): 2.2e-83, 57.494% identity in 407 aa overlap; hypothetical protein 4567878 3287968 BF9343_3774 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213459.1 4566655 R 272559 CDS YP_213460.1 60683316 3287966 complement(4568136..4568978) 1 NC_003228.3 Similar to Bacteroides fragilis transposase for insertion sequence element IS4351 SWALL:TRA4_BACFR (SWALL:P37247) (326 aa) fasta scores: E(): 3.9e-39, 46.42% id in 280 aa, and to Photorhabdus luminescens subsp. laumondii TTO1 transposase, IS30 family ISPLU1F or PLU0854 SWALL:CAE13149 (EMBL:BX571861) (322 aa) fasta scores: E(): 2.4e-33, 41.78% id in 280 aa. Note: Also similar to BF2150 (316 aa) fasta scores: E(): 6.9e-112, 99.643% identity in 280 aa overlap; putative transposase 4568978 3287966 BF9343_3775 Bacteroides fragilis NCTC 9343 putative transposase YP_213460.1 4568136 R 272559 CDS YP_213461.1 60683317 3287967 4569111..4569281 1 NC_003228.3 hypothetical protein 4569281 3287967 BF9343_3776 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213461.1 4569111 D 272559 CDS YP_213462.1 60683318 3287971 complement(4569416..4569676) 1 NC_003228.3 hypothetical protein 4569676 3287971 BF9343_3777 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213462.1 4569416 R 272559 CDS YP_213463.1 60683319 3287969 complement(4569761..4570042) 1 NC_003228.3 hypothetical protein 4570042 3287969 BF9343_3778 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213463.1 4569761 R 272559 CDS YP_213464.1 60683320 3285877 4570311..4570541 1 NC_003228.3 All similarities to eukaryotic database entries such as, Homo sapiens ubiquitin (Uba52 or UbcEP2) and Ubb and Ubc and (Uba80 or UbcEP1 or Rps27A) SWALL:UBIQ_HUMAN (SWALL:P02248) (76 aa) fasta scores: E(): 2.4e-16, 66.66% id in 72 aa, and as Acanthamoeba castellanii ubiquitin SWALL:UBIQ_ACACA (SWALL:P49634) (76 aa) fasta scores: E(): 2e-16, 68.05% id in 72 aa; putative ubiquitin 4570541 ubb 3285877 ubb Bacteroides fragilis NCTC 9343 putative ubiquitin YP_213464.1 4570311 D 272559 CDS YP_213465.1 60683321 3287970 complement(4571568..4571801) 1 NC_003228.3 hypothetical protein 4571801 3287970 BF9343_3780 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213465.1 4571568 R 272559 CDS YP_213466.1 60683322 3289266 complement(4572019..4573896) 1 NC_003228.3 Similar to Bacillus subtilis DNA mismatch repair protein MutL or BSU17050 SWALL:MUTL_BACSU (SWALL:P49850) (627 aa) fasta scores: E(): 1.5e-57, 31.65% id in 635 aa, and to Escherichia coli DNA mismatch repair protein MutL or B4170 SWALL:MUTL_ECOLI (SWALL:P23367) (615 aa) fasta scores: E(): 4.3e-38, 28.41% id in 623 aa; putative DNA mismatch repair protein 4573896 mutL 3289266 mutL Bacteroides fragilis NCTC 9343 putative DNA mismatch repair protein YP_213466.1 4572019 R 272559 CDS YP_213467.1 60683323 3287816 complement(4573933..4574229) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron hypothetical protein BT3850 SWALL:Q8A121 (EMBL:AE016942) (100 aa) fasta scores: E(): 6.7e-30, 79% id in 100 aa; hypothetical protein 4574229 3287816 BF9343_3782 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213467.1 4573933 R 272559 CDS YP_213468.1 60683324 3287972 complement(4574232..4575935) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3849 SWALL:Q8A122 (EMBL:AE016942) (576 aa) fasta scores: E(): 2e-167, 74% id in 577 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0414 SWALL:AAQ65615 (EMBL:AE017173) (626 aa) fasta scores: E(): 1.6e-77, 40.93% id in 491 aa; hypothetical protein 4575935 3287972 BF9343_3783 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213468.1 4574232 R 272559 CDS YP_213469.1 60683325 3287815 complement(4575948..4577318) 1 NC_003228.3 Similar to Salmonella typhi, and Salmonella typhimurium survival protein SurA or T0095 or STM0092 or STY0107 SWALL:Q8XEV3 (EMBL:AE016834) (428 aa) fasta scores: E(): 4.5e-13, 25.38% id in 461 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri survival protein precursor (peptidyl-prolyl cis-trans isomerase) SurA or B0053 or C0066 or Z0062 or ECS0058 or SF0050 or S0052 SWALL:SURA_ECOLI (SWALL:P21202) (428 aa) fasta scores: E(): 8e-12, 25.7% id in 459 aa; putative exported peptidyl-prolyl cis-trans isomerase 4577318 3287815 BF9343_3784 Bacteroides fragilis NCTC 9343 putative exported peptidyl-prolyl cis-trans isomerase YP_213469.1 4575948 R 272559 CDS YP_213470.1 60683326 3287788 complement(4577328..4578170) 1 NC_003228.3 Only similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3847 SWALL:Q8A124 (EMBL:AE016942) (281 aa) fasta scores: E(): 1.7e-83, 75.44% id in 281 aa; hypothetical protein 4578170 3287788 BF9343_3785 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213470.1 4577328 R 272559 CDS YP_213471.1 60683327 3287817 complement(4578227..4579780) 1 NC_003228.3 Similar in its full length only to Bacteroides thetaiotaomicron peptidyl-prolyl cis-trans isomerase BT3846 SWALL:Q8A125 (EMBL:AE016942) (514 aa) fasta scores: E(): 6.3e-98, 50% id in 518 aa, and in its N-terminal region to Agrobacterium tumefaciens peptidyl-prolyl cis-trans isomerase PpiD or STU3519 or AGR_L_2623 SWALL:Q8UA55 (EMBL:AE009281) (315 aa) fasta scores: E(): 6.9e-07, 28.41% id in 278 aa; putative exported isomerase 4579780 3287817 BF9343_3786 Bacteroides fragilis NCTC 9343 putative exported isomerase YP_213471.1 4578227 R 272559 CDS YP_213472.1 60683328 3287918 complement(4579925..4581400) 1 NC_003228.3 Similar to Bacillus subtilis inosine-5'-monophosphate dehydrogenase GuaB or GnaB or BSU00090 SWALL:IMDH_BACSU (SWALL:P21879) (488 aa) fasta scores: E(): 4.8e-94, 58.96% id in 485 aa, and to Bacillus halodurans inosine-5'-monophosphate dehydrogenase GuaB or BH0020 SWALL:IMDH_BACHD (SWALL:Q9KGN8) (485 aa) fasta scores: E(): 1.8e-97, 60.95% id in 484 aa; putative inosine-5'-monophosphate dehydrogenase 4581400 guaB 3287918 guaB Bacteroides fragilis NCTC 9343 putative inosine-5'-monophosphate dehydrogenase YP_213472.1 4579925 R 272559 CDS YP_213473.1 60683329 3289303 complement(4581487..4583667) 1 NC_003228.3 Similar to Escherichia coli ATP-dependent DNA helicase RecQ or B3822 SWALL:RECQ_ECOLI (SWALL:P15043) (607 aa) fasta scores: E(): 2.8e-83, 39.6% id in 601 aa, and to Salmonella typhimurium ATP-dependent DNA helicase RecQ or STM3958 or STMD1.32 SWALL:RECQ_SALTY (SWALL:P40724) (608 aa) fasta scores: E(): 2.5e-83, 39.76% id in 601 aa; putative ATP-dependent DNA helicase 4583667 recQ1 3289303 recQ1 Bacteroides fragilis NCTC 9343 putative ATP-dependent DNA helicase YP_213473.1 4581487 R 272559 CDS YP_213474.1 60683330 3289279 complement(4583838..4585085) 1 NC_003228.3 Similar to Bacillus subtilis ATP-dependent CLP protease ATP-binding subunit ClpX or BSU28220 SWALL:CLPX_BACSU (SWALL:P50866) (420 aa) fasta scores: E(): 1.4e-74, 56.39% id in 383 aa, and to Thermoanaerobacter tengcongensis ATP-dependent CLP protease ATP-binding subunit ClpX or TTE0626 SWALL:CLPX_THETN (SWALL:Q8RC24) (425 aa) fasta scores: E(): 1.7e-75, 56.85% id in 394 aa; putative ATP-dependent CLP protease ATP-binding subunit 4585085 clpX 3289279 clpX Bacteroides fragilis NCTC 9343 putative ATP-dependent CLP protease ATP-binding subunit YP_213474.1 4583838 R 272559 CDS YP_213475.1 60683331 3289277 complement(4585088..4585711) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ATP-dependent CLP protease proteolytic subunit ClpP or LopP or B0437 or C0553 or Z0542 or ECS0491 or SF0382 or S0388 SWALL:CLPP_ECOLI (SWALL:P19245) (207 aa) fasta scores: E(): 4.5e-36, 52.35% id in 191 aa, and to Bacillus halodurans ATP-dependent CLP protease proteolytic subunit 2 ClpP2 or BH3118 SWALL:CLP2_BACHD (SWALL:Q9K888) (194 aa) fasta scores: E(): 2.6e-38, 55.78% id in 190 aa; putative ATP-dependent CLP protease proteolytic subunit 4585711 clpP 3289277 clpP Bacteroides fragilis NCTC 9343 putative ATP-dependent CLP protease proteolytic subunit YP_213475.1 4585088 R 272559 CDS YP_213476.1 60683332 3287818 complement(4585888..4587243) 1 NC_003228.3 Similar to Bacillus subtilis trigger factor Tig or BSU28230 SWALL:TIG_BACSU (SWALL:P80698) (423 aa) fasta scores: E(): 1.8e-06, 23.2% id in 431 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri trigger factor Tig or B0436 or Z0541 or ECS0490 or SF0381 or S0387 SWALL:TIG_ECOLI (SWALL:P22257) (432 aa) fasta scores: E(): 1.5e-05, 23.65% id in 465 aa; putative cell division trigger factor 4587243 3287818 BF9343_3791 Bacteroides fragilis NCTC 9343 putative cell division trigger factor YP_213476.1 4585888 R 272559 CDS YP_213477.1 60683333 3287789 complement(4587340..4587912) 1 NC_003228.3 hypothetical protein 4587912 3287789 BF9343_3792 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213477.1 4587340 R 272559 CDS YP_213478.1 60683334 3287790 4588483..4588728 1 NC_003228.3 Similar to Bacteroides fragilis RNA binding protein Rbp (BF2361) SWALL:Q938I5 (EMBL:AY050657) (80 aa) fasta scores: E(): 6.8e-17, 70.13% id in 77 aa, and to Synechocystis sp. putative RNA-binding protein RbpA or SLL0517 SWALL:RBPA_SYNY3 (SWALL:Q57014) (101 aa) fasta scores: E(): 3.4e-12, 54.32% id in 81 aa. Note: Also similar to BF2225 (82 aa) fasta scores: E(): .2e-20, 67.500% identity in 80 aa overlap; putative RNA-binding protein 4588728 3287790 BF9343_3793 Bacteroides fragilis NCTC 9343 putative RNA-binding protein YP_213478.1 4588483 D 272559 CDS YP_213479.1 60683335 3287792 complement(4588847..4589608) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG0628 SWALL:AAQ65812 (EMBL:AE017174) (251 aa) fasta scores: E(): 3.3e-68, 78.8% id in 250 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri probable ABC transporter ATP-binding protein YhbG or B3201 or C3961 or Z4564 or ECS4080 or SF3241 or S3459 SWALL:YHBG_ECOLI (SWALL:P31220) (240 aa) fasta scores: E(): 9.1e-41, 50.42% id in 238 aa; putative ABC transport system, ATP-binding protein 4589608 3287792 BF9343_3794 Bacteroides fragilis NCTC 9343 putative ABC transport system, ATP-binding protein YP_213479.1 4588847 R 272559 CDS YP_213480.1 60683336 3287794 4589663..4590427 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 hypothetical protein PG1033 SWALL:AAQ66152 (EMBL:AE017175) (248 aa) fasta scores: E(): 2.5e-54, 60.24% id in 244 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YrbE or B3194 or C3954 or Z4557 or ECS4073 or SF3234 or S3452 SWALL:YRBE_ECOLI (SWALL:P45392) (260 aa) fasta scores: E(): 1.2e-16, 30.95% id in 252 aa; hypothetical protein 4590427 3287794 BF9343_3795 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213480.1 4589663 D 272559 CDS YP_213481.1 60683337 3287791 4590424..4591194 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG1034 SWALL:AAQ66153 (EMBL:AE017175) (244 aa) fasta scores: E(): 1.8e-56, 62.81% id in 242 aa, and to Escherichia coli glutamine transport ATP-binding protein GlnQ or B0809 SWALL:GLNQ_ECOLI (SWALL:P10346) (240 aa) fasta scores: E(): 1.4e-23, 36.4% id in 239 aa; putative ABC amino acid transport system, ATP-binding protein 4591194 3287791 BF9343_3796 Bacteroides fragilis NCTC 9343 putative ABC amino acid transport system, ATP-binding protein YP_213481.1 4590424 D 272559 CDS YP_213482.1 60683338 3287793 complement(4591426..4592073) 1 NC_003228.3 Similar to Coxiella burnetii DNA-binding response regulator, LuxR family CBU0955 SWALL:Q83CZ5 (EMBL:AE016963) (217 aa) fasta scores: E(): 9.2e-15, 30% id in 210 aa, and to Escherichia coli, and Shigella flexneri response regulator UvrY or B1914 or SF1957 or S2053 SWALL:UVRY_ECOLI (SWALL:P07027) (218 aa) fasta scores: E(): 4.8e-12, 25.48% id in 208 aa; putative LuxR-family regulatory protein 4592073 3287793 BF9343_3797 Bacteroides fragilis NCTC 9343 putative LuxR-family regulatory protein YP_213482.1 4591426 R 272559 CDS YP_213483.1 60683339 3287797 complement(4592250..4593563) 1 NC_003228.3 Similar to Enterococcus faecalis GTP-binding protein EngA or EF1549 SWALL:ENGA_ENTFA (SWALL:Q834T4) (436 aa) fasta scores: E(): 1.5e-65, 46.59% id in 440 aa, and to Escherichia coli, and Escherichia coli O157:H7 GTP-binding protein EngA or Der or B2511 or Z3774 or ECS3373 SWALL:ENGA_ECOLI (SWALL:P77254) (490 aa) fasta scores: E(): 5.9e-27, 37.63% id in 465 aa; putative GTP-binding protein 4593563 3287797 BF9343_3798 Bacteroides fragilis NCTC 9343 putative GTP-binding protein YP_213483.1 4592250 R 272559 CDS YP_213484.1 60683340 3287795 complement(4593616..4594533) 1 NC_003228.3 Similar to Staphylococcus aureus GTP-binding protein homolog Era or Bex or SAV1567 or SA1396 or MW1519 SWALL:ERA_STAAM (SWALL:Q99TS9) (299 aa) fasta scores: E(): 4.5e-41, 44.59% id in 296 aa, and to Escherichia coli GTP-binding protein Era or RbaA or B2566 SWALL:ERA_ECOLI (SWALL:P06616) (301 aa) fasta scores: E(): 1.5e-30, 38.98% id in 295 aa; putative GTP-binding protein (cell growth-related) 4594533 3287795 BF9343_3799 Bacteroides fragilis NCTC 9343 putative GTP-binding protein (cell growth-related) YP_213484.1 4593616 R 272559 CDS YP_213485.1 60683341 3285167 complement(4594585..4595589) 1 NC_003228.3 Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier-protein] synthase III protein 2 FabHB or FabH2 or BSU10170 SWALL:FAH2_BACSU (SWALL:O07600) (325 aa) fasta scores: E(): 4.2e-40, 37.11% id in 326 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 3-oxoacyl-[acyl-carrier-protein] synthase III FabH or B1091 or C1360 or Z1730 or ECS1469 SWALL:FABH_ECOLI (SWALL:P24249) (317 aa) fasta scores: E(): 8.4e-39, 38.46% id in 325 aa; putative 3-oxoacyl-[acyl-carrier-protein] synthase III 4595589 fabH 3285167 fabH Bacteroides fragilis NCTC 9343 putative 3-oxoacyl-[acyl-carrier-protein] synthase III YP_213485.1 4594585 R 272559 CDS YP_213486.1 60683342 3287796 complement(4595886..4596422) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3832 SWALL:Q8A139 (EMBL:AE016942) (179 aa) fasta scores: E(): 3.7e-62, 83.79% id in 179 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2139 SWALL:AAQ67092 (EMBL:AE017179) (159 aa) fasta scores: E(): 1.5e-14, 30.9% id in 165 aa; hypothetical protein 4596422 3287796 BF9343_3801 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213486.1 4595886 R 272559 CDS YP_213487.1 60683343 3287800 complement(4602120..4602347) 1 NC_003228.3 no significant database matches; hypothetical protein 4602347 3287800 BF9343_3802 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213487.1 4602120 R 272559 CDS YP_213488.1 60683344 3287798 4602722..4602910 1 NC_003228.3 no significant database matches; hypothetical protein 4602910 3287798 BF9343_3803 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213488.1 4602722 D 272559 CDS YP_213489.1 60683345 3287799 4604104..4605057 1 NC_003228.3 Similar to Rhodothermus marinus 5,10-methylenetetrahydrofolate reductase MetF SWALL:Q9F3S4 (EMBL:AJ249578) (318 aa) fasta scores: E(): 6.6e-52, 41.98% id in 312 aa, and to Bacteroides thetaiotaomicron 5,10-methylenetetrahydrofolate reductase BT3821 SWALL:Q8A146 (EMBL:AE016942) (317 aa) fasta scores: E(): 6.3e-118, 89.27% id in 317 aa; putative 5,10-methylenetetrahydrofolate reductase 4605057 3287799 BF9343_3804 Bacteroides fragilis NCTC 9343 putative 5,10-methylenetetrahydrofolate reductase YP_213489.1 4604104 D 272559 CDS YP_213490.1 60683346 3287803 4605061..4606170 1 NC_003228.3 Similar to Staphylococcus aureus HolB protein or sa0442 SWALL:Q99WB9 (EMBL:AP003130) (308 aa) fasta scores: E(): 1.6e-06, 26.5% id in 283 aa, and to Bacteroides thetaiotaomicron putative DNA polymerase III, delta subunit BT3820 SWALL:Q8A147 (EMBL:AE016942) (374 aa) fasta scores: E(): 8.2e-125, 83.69% id in 374 aa, and to Porphyromonas gingivalis W83 DNA polymerase III, delta prime subunit, putative PG0932 SWALL:AAQ66066 (EMBL:AE017175) (416 aa) fasta scores: E(): 3e-56, 42.31% id in 371 aa; putative DNA polymerase III delta prime subunit 4606170 3287803 BF9343_3805 Bacteroides fragilis NCTC 9343 putative DNA polymerase III delta prime subunit YP_213490.1 4605061 D 272559 CDS YP_213491.1 60683347 3287801 4606187..4607641 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3819 SWALL:Q8A148 (EMBL:AE016942) (531 aa) fasta scores: E(): 1.1e-118, 76.04% id in 505 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0400 SWALL:AAQ65605 (EMBL:AE017173) (427 aa) fasta scores: E(): 2.9e-69, 55.48% id in 447 aa. This CDS overlaps 21 nt with the downstream CDS.; hypothetical protein 4607641 3287801 BF9343_3806 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213491.1 4606187 D 272559 CDS YP_213492.1 60683348 3286721 4607619..4608089 1 NC_003228.3 Similar to Cytophaga johnsonae GldH SWALL:Q8KRP0 (EMBL:AF527791) (159 aa) fasta scores: E(): 5.6e-11, 31.64% id in 158 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3818 SWALL:Q8A149 (EMBL:AE016942) (159 aa) fasta scores: E(): 2.6e-34, 58.06% id in 155 aa. This CDS overlaps 21 nt with the upstream CDS. Possible alternative start site at codon 11 in which case the CDS would not overlap with the upstream CDS.; putative gliding motility protein 4608089 gldH 3286721 gldH Bacteroides fragilis NCTC 9343 putative gliding motility protein YP_213492.1 4607619 D 272559 CDS YP_213493.1 60683349 3289267 complement(4608084..4609508) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri rod shape-determining protein RodA MrdB or RodA or B0634 or Z0780 or ECS0672 or SF0647 or s0669 SWALL:RODA_ECOLI (SWALL:P15035) (370 aa) fasta scores: E(): 5.7e-24, 37.45% id in 267 aa, and to Bacteroides thetaiotaomicron rod shape-determining protein RodA BT3817 SWALL:Q8A150 (EMBL:AE016942) (485 aa) fasta scores: E(): 2.4e-171, 86.92% id in 474 aa, and to Porphyromonas gingivalis W83 rod shape-determining protein RodA, putative PG1392 SWALL:AAQ66452 (EMBL:AE017176) (485 aa) fasta scores: E(): 3.7e-97, 52% id in 473 aa; putative transmembrane rod shape-determining protein 4609508 mrdB 3289267 mrdB Bacteroides fragilis NCTC 9343 putative transmembrane rod shape-determining protein YP_213493.1 4608084 R 272559 CDS YP_213494.1 60683350 3289250 complement(4609522..4611378) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 penicillin-binding protein 2 MrdA or PbpA or B0635 or C0726 or Z0781 or ECS0673 SWALL:PBP2_ECOLI (SWALL:P08150) (633 aa) fasta scores: E(): 1.2e-34, 28.77% id in 636 aa, and to previously sequenced Bacteroides fragilis penicillin-binding protein 2 PbpA SWALL:Q7WRT4 (EMBL:AJ544243) (618 aa) fasta scores: E(): 0, 99.83% id in 618 aa; putative penicillin-binding protein 2 4611378 mrdA 3289250 mrdA Bacteroides fragilis NCTC 9343 putative penicillin-binding protein 2 YP_213494.1 4609522 R 272559 CDS YP_213495.1 60683351 3287802 complement(4611381..4611878) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3815 SWALL:Q8A152 (EMBL:AE016942) (165 aa) fasta scores: E(): 1.9e-51, 78.18% id in 165 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1394 SWALL:AAQ66454 (EMBL:AE017176) (172 aa) fasta scores: E(): 5.1e-13, 30.46% id in 151 aa; putative transmembrane protein 4611878 3287802 BF9343_3810 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213495.1 4611381 R 272559 CDS YP_213496.1 60683352 3287806 complement(4611875..4612720) 1 NC_003228.3 Limited similarity to Bacillus subtilis rod shape-determining protein MreC or BSU28020 SWALL:MREC_BACSU (SWALL:Q01466) (290 aa) fasta scores: E(): 0.0017, 23.75% id in 240 aa, and to Bacteroides thetaiotaomicron rod shape-determining protein BT3814 SWALL:Q8A153 (EMBL:AE016942) (280 aa) fasta scores: E(): 1.4e-83, 79.21% id in 279 aa, and to Porphyromonas gingivalis W83 cell shape-determining protein MreC, putative PG1395 SWALL:AAQ66455 (EMBL:AE017176) (295 aa) fasta scores: E(): 4.4e-34, 37.28% id in 287 aa; putative rod shape-determining protein MreC 4612720 3287806 BF9343_3811 Bacteroides fragilis NCTC 9343 putative rod shape-determining protein MreC YP_213496.1 4611875 R 272559 CDS YP_213497.1 60683353 3286412 complement(4612822..4613844) 1 NC_003228.3 Similar to Bacillus cereus MreB-like protein Mbl SWALL:MBL_BACCE (SWALL:P32444) (333 aa) fasta scores: E(): 8.7e-48, 45.01% id in 331 aa, and to Bacteroides thetaiotaomicron rod shape-determining protein MreB BT3813 SWALL:Q8A154 (EMBL:AE016942) (340 aa) fasta scores: E(): 6.5e-117, 98.52% id in 340 aa, and to Porphyromonas gingivalis W83 cell shape-determining protein MreB or PG1396 SWALL:AAQ66456 (EMBL:AE017176) (339 aa) fasta scores: E(): 9.1e-85, 70.29% id in 340 aa; putative rod-shape determining protein 4613844 mreB 3286412 mreB Bacteroides fragilis NCTC 9343 putative rod-shape determining protein YP_213497.1 4612822 R 272559 CDS YP_213498.1 60683354 3289314 complement(4613919..4615442) 1 NC_003228.3 Similar to Bacillus subtilis bifunctional purine biosynthesis protein PurH or PurHJ or BSU06520 SWALL:PUR9_BACSU (SWALL:P12048) (512 aa) fasta scores: E(): 2.4e-44, 41.74% id in 515 aa, and to Bacteroides thetaiotaomicron bifunctional purine biosynthesis protein PurH or BT3812 SWALL:PUR9_BACTN (SWALL:Q8A155) (507 aa) fasta scores: E(): 2.3e-181, 94.08% id in 507 aa, and to Porphyromonas gingivalis W83 phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase PurH or PG1397 SWALL:AAQ66457 (EMBL:AE017176) (508 aa) fasta scores: E(): 5.7e-127, 66.79% id in 503 aa; putative bifunctional purine biosynthesis protein 4615442 purH 3289314 purH Bacteroides fragilis NCTC 9343 putative bifunctional purine biosynthesis protein YP_213498.1 4613919 R 272559 CDS YP_213499.1 60683355 3286398 complement(4615594..4617627) 1 NC_003228.3 Similar to Porphyromonas gingivalis endothelin-like protein PepO SWALL:O50642 (EMBL:AB010440) (689 aa) fasta scores: E(): 8.5e-135, 51.08% id in 689 aa, and C-terminus is similar to Bacteroides thetaiotaomicron putative endothelin-converting enzyme BT3811 SWALL:Q8A156 (EMBL:AE016942) (452 aa) fasta scores: E(): 2.7e-151, 82.52% id in 452 aa, and entire proteins is similar to Porphyromonas gingivalis W83 endopeptidase PepO or PG0159 SWALL:AAQ65399 (EMBL:AE017172) (689 aa) fasta scores: E(): 3e-134, 50.94% id in 689 aa; putative endopeptidase 4617627 pepO 3286398 pepO Bacteroides fragilis NCTC 9343 putative endopeptidase YP_213499.1 4615594 R 272559 CDS YP_213500.1 60683356 3287804 complement(4617643..4619598) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT3809 SWALL:Q8A158 (EMBL:AE016942) (651 aa) fasta scores: E(): 4.5e-185, 89.67% id in 649 aa, and to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein, putative PG2199 SWALL:AAQ67141 (EMBL:AE017179) (645 aa) fasta scores: E(): 1.1e-127, 61.72% id in 648 aa, and to Bacteroides thetaiotaomicron putative ABC transporter ATP-binding protein BT2035 SWALL:Q8A651 (EMBL:AE016934) (545 aa) fasta scores: E(): 5.5e-117, 67.27% id in 544 aa; putative ATP-binding component of ABC transporter 4619598 3287804 BF9343_3815 Bacteroides fragilis NCTC 9343 putative ATP-binding component of ABC transporter YP_213500.1 4617643 R 272559 CDS YP_213501.1 60683357 3287805 complement(4619826..4620818) 1 NC_003228.3 Similar to C-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT4324 SWALL:Q89ZQ2 (EMBL:AE016944) (880 aa) fasta scores: E(): 3.1e-05, 26.06% id in 330 aa; hypothetical protein 4620818 3287805 BF9343_3816 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213501.1 4619826 R 272559 CDS YP_213502.1 60683358 3287809 complement(4620984..4621151) 1 NC_003228.3 no significant database matches; hypothetical protein 4621151 3287809 BF9343_3817 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213502.1 4620984 R 272559 CDS YP_213503.1 60683359 3287807 complement(4621651..4622553) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3808 SWALL:Q8A159 (EMBL:AE016942) (303 aa) fasta scores: E(): 5.2e-90, 76.89% id in 303 aa, and to Porphyromonas gingivalis W83 conserved domain protein PG0160 SWALL:AAQ65400 (EMBL:AE017172) (300 aa) fasta scores: E(): 1.7e-81, 68.66% id in 300 aa, and to Clostridium perfringens hypothetical protein CPE1201 SWALL:Q8XL41 (EMBL:AP003189) (305 aa) fasta scores: E(): 3.2e-50, 48.33% id in 300 aa; hypothetical protein 4622553 3287807 BF9343_3818 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213503.1 4621651 R 272559 CDS YP_213504.1 60683360 3287808 complement(4622680..4625031) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3807 SWALL:Q8A160 (EMBL:AE016942) (788 aa) fasta scores: E(): 0, 69.75% id in 787 aa, and to Porphyromonas gingivalis W83 lipoprotein, putative PG2095 SWALL:AAQ67054 (EMBL:AE017179) (775 aa) fasta scores: E(): 4.1e-92, 45.08% id in 783 aa; hypothetical protein 4625031 3287808 BF9343_3819 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213504.1 4622680 R 272559 CDS YP_213505.1 60683361 3287812 complement(4625059..4629603) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3806 SWALL:Q8A161 (EMBL:AE016942) (1479 aa) fasta scores: E(): 0, 71.35% id in 1480 aa, and to Porphyromonas gingivalis W83 conserved domain protein PG2096 SWALL:AAQ67055 (EMBL:AE017179) (1596 aa) fasta scores: E(): 7.2e-89, 30.86% id in 1591 aa. Putative alternative start site at codon 25; hypothetical protein 4629603 3287812 BF9343_3820 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213505.1 4625059 R 272559 CDS YP_213506.1 60683362 3287810 complement(4629717..4632017) 1 NC_003228.3 Similar to Vibrio fischeri two-component system RscS SWALL:Q9ANY0 (EMBL:AF319618) (927 aa) fasta scores: E(): 4.2e-27, 27.08% id in 528 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT3805 SWALL:Q8A162 (EMBL:AE016942) (785 aa) fasta scores: E(): 5.2e-156, 65.12% id in 780 aa, and to Bacteroides thetaiotaomicron RteA, two-component system histidine kinase, with response regulator receiver domain BT0014 SWALL:Q8ABU6 (EMBL:AE016926) (807 aa) fasta scores: E(): 3.3e-33, 32.35% id in 751 aa; putative two-component system sensor histidine kinase/response regulator fusion protein 4632017 3287810 BF9343_3821 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase/response regulator fusion protein YP_213506.1 4629717 R 272559 CDS YP_213507.1 60683363 3287811 complement(4632021..4633346) 1 NC_003228.3 Similar to Salmonella typhimurium multidrug resistance protein NorM or STM1425 SWALL:NORM_SALTY (SWALL:Q8ZPP2) (457 aa) fasta scores: E(): 2.9e-35, 28.82% id in 444 aa, and to Bacteroides thetaiotaomicron putative transport protein, multidrug efflux protein BT3804 SWALL:Q8A163 (EMBL:AE016942) (452 aa) fasta scores: E(): 1.1e-137, 80.13% id in 438 aa; putative transmembrane transport efflux protein 4633346 3287811 BF9343_3822 Bacteroides fragilis NCTC 9343 putative transmembrane transport efflux protein YP_213507.1 4632021 R 272559 CDS YP_213508.1 60683364 3286965 complement(4633330..4634592) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative zinc protease BT3803 SWALL:Q8A164 (EMBL:AE016942) (412 aa) fasta scores: E(): 6.9e-145, 89.21% id in 408 aa, and to Gloeobacter violaceus PCC 7421 Glr3686 protein SWALL:BAC91627 (EMBL:AP006580) (489 aa) fasta scores: E(): 1.9e-42, 35.92% id in 412 aa; putative protease 4634592 3286965 BF9343_3823 Bacteroides fragilis NCTC 9343 putative protease YP_213508.1 4633330 R 272559 CDS YP_213509.1 60683365 3287813 complement(4634595..4635434) 1 NC_003228.3 C-terminus is similar to the N-terminus of Caenorhabditis elegans peptidyl-prolyl cis-trans isomerase 10 Cyp-10 or B0252.4 SWALL:CYPA_CAEEL (SWALL:P52017) (161 aa) fasta scores: E(): 3.8e-07, 33.97% id in 156 aa, and to Bacteroides thetaiotaomicron peptidyl-prolyl cis-trans isomerase, cyclophilin-type BT3802 SWALL:Q8A165 (EMBL:AE016942) (279 aa) fasta scores: E(): 3e-88, 80.64% id in 279 aa, and to Porphyromonas gingivalis W83 peptidyl-prolyl cis-trans isomerase, cyclophilin-type PG1226 SWALL:AAQ66315 (EMBL:AE017176) (234 aa) fasta scores: E(): 8.6e-25, 40.64% id in 278 aa; putative peptidyl-prolyl cis-trans isomerase 4635434 3287813 BF9343_3824 Bacteroides fragilis NCTC 9343 putative peptidyl-prolyl cis-trans isomerase YP_213509.1 4634595 R 272559 CDS YP_213510.1 60683366 3287739 4635528..4636871 1 NC_003228.3 Similar to Escherichia coli transcriptional regulatory protein ZraR or HydG or B4004 SWALL:ZRAR_ECOLI (SWALL:P14375) (441 aa) fasta scores: E(): 9.3e-54, 40.81% id in 441 aa, and to Bacteroides thetaiotaomicron RteB, two-component system response regulator BT3801 SWALL:Q8A166 (EMBL:AE016942) (457 aa) fasta scores: E(): 1.4e-130, 82.89% id in 456 aa; putative two-component response regulator transcriptional regulatory protein 4636871 3287739 BF9343_3825 Bacteroides fragilis NCTC 9343 putative two-component response regulator transcriptional regulatory protein YP_213510.1 4635528 D 272559 CDS YP_213511.1 60683367 3287740 4637084..4637368 1 NC_003228.3 no significant database matches; hypothetical protein 4637368 3287740 BF9343_3826 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213511.1 4637084 D 272559 CDS YP_213512.1 60683368 3287741 complement(4637517..4638182) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ribosomal large subunit pseudouridine synthase D BT3772 SWALL:Q8A194 (EMBL:AE016942) (223 aa) fasta scores: E(): 2.5e-82, 88.68% id in 221 aa, and truncated at the N-terminus but similar to Rhodopirellula baltica ribosomal large subunit pseudouridine synthase D RluD or rb6482 SWALL:Q7UQ77 (EMBL:BX294144) (256 aa) fasta scores: E(): 3.1e-25, 39.45% id in 218 aa, and truncated at the N-terminus but similar to Clostridium perfringens ribosomal large subunit pseudouridine synthase C CPE1204 SWALL:Q8XL38 (EMBL:AP003189) (324 aa) fasta scores: E(): 4.6e-19, 39.57% id in 187 aa; putative ribosomal large subunit pseudouridine synthase 4638182 3287741 BF9343_3827 Bacteroides fragilis NCTC 9343 putative ribosomal large subunit pseudouridine synthase YP_213512.1 4637517 R 272559 CDS YP_213513.1 60683369 3285123 complement(4638191..4638937) 1 NC_003228.3 Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG or BSU15910 SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 2.9e-42, 53.65% id in 246 aa, and to Bacteroides thetaiotaomicron 3-oxoacyl-[acyl-carrier protein] reductase BT3771 SWALL:Q8A195 (EMBL:AE016942) (248 aa) fasta scores: E(): 6.9e-82, 93.95% id in 248 aa, and to Porphyromonas gingivalis W83 3-oxoacyl-(acyl-carrier protein) reductase FabG or PG1239 SWALL:AAQ66324 (EMBL:AE017176) (248 aa) fasta scores: E(): 1.3e-65, 75% id in 248 aa; putative 3-oxoacyl-[acyl-carrier protein] reductase 4638937 fabG 3285123 fabG Bacteroides fragilis NCTC 9343 putative 3-oxoacyl-[acyl-carrier protein] reductase YP_213513.1 4638191 R 272559 CDS YP_213514.1 60683370 3287742 complement(4638950..4639546) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT3770 SWALL:Q8A196 (EMBL:AE016942) (196 aa) fasta scores: E(): 8.4e-62, 89.28% id in 196 aa, and to Porphyromonas gingivalis W83 transcriptional regulator, TetR family PG1240 SWALL:AAQ66325 (EMBL:AE017176) (202 aa) fasta scores: E(): 3.7e-30, 53.03% id in 181 aa; putative TetR-family transcriptional regulator 4639546 3287742 BF9343_3829 Bacteroides fragilis NCTC 9343 putative TetR-family transcriptional regulator YP_213514.1 4638950 R 272559 CDS YP_213515.1 60683371 3287745 complement(4640348..4641871) 1 NC_003228.3 no significant database matches; hypothetical protein 4641871 3287745 BF9343_3830 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213515.1 4640348 R 272559 CDS YP_213516.1 60683372 3287746 complement(4642004..4642777) 1 NC_003228.3 Similar to Butyrivibrio fibrisolvens hypothetical protein SWALL:Q9X2W5 (EMBL:AF062647) (249 aa) fasta scores: E(): 5e-07, 20.69% id in 203 aa, and to Ruminococcus gnavus RumG protein SWALL:Q93JP7 (EMBL:AJ276653) (254 aa) fasta scores: E(): 5.1e-07, 19.61% id in 260 aa; putative transmembrane protein 4642777 3287746 BF9343_3831 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213516.1 4642004 R 272559 CDS YP_213517.1 60683373 3287747 complement(4642774..4643676) 1 NC_003228.3 Similar to Streptococcus mutans ABC transporter MutF SWALL:Q9Z6E0 (EMBL:AF082183) (302 aa) fasta scores: E(): 1.5e-31, 38.53% id in 301 aa, and to Thermoanaerobacter tengcongensis ABC-type multidrug transport system, ATPase component CcmA12 or TTE2182 SWALL:Q8R847 (EMBL:AE013164) (308 aa) fasta scores: E(): 6.1e-30, 33.44% id in 308 aa, and to Clostridium difficile Cdd4 protein SWALL:P94627 (EMBL:X92982) (301 aa) fasta scores: E(): 3.5e-29, 35.37% id in 294 aa; putative ABC transporter transmembrane component 4643676 3287747 BF9343_3832 Bacteroides fragilis NCTC 9343 putative ABC transporter transmembrane component YP_213517.1 4642774 R 272559 CDS YP_213518.1 60683374 3287748 complement(4643664..4644992) 1 NC_003228.3 Similar to Caulobacter crescentus hypothetical protein Cc0867 SWALL:Q9A9U4 (EMBL:AE005763) (396 aa) fasta scores: E(): 3.8e-08, 25% id in 376 aa; hypothetical protein 4644992 3287748 BF9343_3833 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213518.1 4643664 R 272559 CDS YP_213519.1 60683375 3286898 complement(4645076..4645873) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1303 SWALL:Q8A871 (EMBL:AE016931) (266 aa) fasta scores: E(): 1.4e-12, 27.1% id in 273 aa; hypothetical protein 4645873 3286898 BF9343_3834 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213519.1 4645076 R 272559 CDS YP_213520.1 60683376 3287750 complement(4645886..4646254) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative transcriptional regulator BT1304 SWALL:Q8A870 (EMBL:AE016931) (123 aa) fasta scores: E(): 1.7e-31, 72.72% id in 121 aa, and to Porphyromonas gingivalis W83 transcriptional regulator, GntR family PG1007 SWALL:AAQ66129 (EMBL:AE017175) (123 aa) fasta scores: E(): 5.7e-15, 47.17% id in 106 aa, and to Clostridium tetani transcriptional regulator, GntR family or CTC01687 SWALL:Q893X0 (EMBL:AE015941) (121 aa) fasta scores: E(): 7.3e-10, 35.04% id in 117 aa; putative GntR family transcriptional regulator 4646254 3287750 BF9343_3835 Bacteroides fragilis NCTC 9343 putative GntR family transcriptional regulator YP_213520.1 4645886 R 272559 CDS YP_213521.1 60683377 3287752 complement(4646270..4647085) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1305 SWALL:Q8A869 (EMBL:AE016931) (271 aa) fasta scores: E(): 8.1e-34, 37.68% id in 276 aa; putative transmembrane protein 4647085 3287752 BF9343_3836 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213521.1 4646270 R 272559 CDS YP_213522.1 60683378 3287749 complement(4647082..4647942) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative ABC transporter ATP-binding protein BT1306 SWALL:Q8A868 (EMBL:AE016931) (282 aa) fasta scores: E(): 1.1e-74, 75.08% id in 281 aa, and to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG1010 SWALL:AAQ66132 (EMBL:AE017175) (275 aa) fasta scores: E(): 3.6e-30, 37.68% id in 268 aa, and to Borrelia burgdorferi ABC transporter, ATP-binding protein bb0573 SWALL:O51520 (EMBL:AE001158) (270 aa) fasta scores: E(): 1.8e-26, 39.54% id in 263 aa; putative ATP-binding component of ABC transporter 4647942 3287749 BF9343_3837 Bacteroides fragilis NCTC 9343 putative ATP-binding component of ABC transporter YP_213522.1 4647082 R 272559 CDS YP_213523.1 60683379 3287751 complement(4648248..4649681) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron tetratricopeptide repeat family protein BT2663 SWALL:Q8A4D6 (EMBL:AE016937) (483 aa) fasta scores: E(): 5.7e-114, 67.9% id in 483 aa; putative TPR-repeat family protein 4649681 3287751 BF9343_3838 Bacteroides fragilis NCTC 9343 putative TPR-repeat family protein YP_213523.1 4648248 R 272559 CDS YP_213524.1 60683380 3287756 complement(4649701..4650648) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative phosphate ABC transporter, phosphate-binding component BT2664 SWALL:Q8A4D5 (EMBL:AE016937) (314 aa) fasta scores: E(): 4.2e-94, 78.73% id in 315 aa; hypothetical protein 4650648 3287756 BF9343_3839 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213524.1 4649701 R 272559 CDS YP_213525.1 60683381 3287753 complement(4650651..4651466) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TonB BT2665 SWALL:Q8A4D4 (EMBL:AE016937) (270 aa) fasta scores: E(): 4.7e-74, 77.94% id in 272 aa, and to Bacteroides thetaiotaomicron TonB BT2059 SWALL:Q8A627 (EMBL:AE016934) (227 aa) fasta scores: E(): 3.3e-20, 37.71% id in 236 aa; putative TonB-family outer membrane receptor protein 4651466 3287753 BF9343_3840 Bacteroides fragilis NCTC 9343 putative TonB-family outer membrane receptor protein YP_213525.1 4650651 R 272559 CDS YP_213526.1 60683382 3287754 complement(4651496..4652146) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2666 SWALL:Q8A4D3 (EMBL:AE016937) (217 aa) fasta scores: E(): 3.4e-61, 81.48% id in 216 aa; hypothetical protein 4652146 3287754 BF9343_3841 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213526.1 4651496 R 272559 CDS YP_213527.1 60683383 3287759 complement(4652159..4652764) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2667 SWALL:Q8A4D2 (EMBL:AE016937) (201 aa) fasta scores: E(): 4.6e-60, 83.08% id in 201 aa, and to Chlorobium tepidum hypothetical protein CT1585 SWALL:Q8KC41 (EMBL:AE012913) (177 aa) fasta scores: E(): 8.1e-06, 26.02% id in 196 aa; hypothetical protein 4652764 3287759 BF9343_3842 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213527.1 4652159 R 272559 CDS YP_213528.1 60683384 3287757 complement(4652792..4653604) 1 NC_003228.3 Similar to Pseudomonas aeruginosa TolQ protein or pa0969 SWALL:TOLQ_PSEAE (SWALL:P50598) (231 aa) fasta scores: E(): 3.2e-07, 27.22% id in 191 aa, and to Bacteroides thetaiotaomicron MotA/TolQ/ExbB proton channel BT2668 SWALL:Q8A4D1 (EMBL:AE016937) (265 aa) fasta scores: E(): 7.3e-83, 86.61% id in 269 aa, and to Chlorobium tepidum MotA/TolQ/ExbB proton channel family protein CT1586 SWALL:Q8KC40 (EMBL:AE012913) (247 aa) fasta scores: E(): 1.6e-29, 37.86% id in 243 aa; putative transmembrane MotA/TolQ/ExbB proton channel family protein 4653604 3287757 BF9343_3843 Bacteroides fragilis NCTC 9343 putative transmembrane MotA/TolQ/ExbB proton channel family protein YP_213528.1 4652792 R 272559 CDS YP_213529.1 60683385 3287758 complement(4653744..4654187) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2669 SWALL:Q8A4D0 (EMBL:AE016937) (147 aa) fasta scores: E(): 3.3e-32, 64.18% id in 148 aa; hypothetical protein 4654187 3287758 BF9343_3844 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213529.1 4653744 R 272559 CDS YP_213530.1 60683386 3287760 complement(4660049..4660726) 1 NC_003228.3 no significant database matches; putative transmembrane protein 4660726 3287760 BF9343_3845 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213530.1 4660049 R 272559 CDS YP_213531.1 60683387 3287761 complement(4663316..4663648) 1 NC_003228.3 Similar to Campylobacter jejuni hypothetical protein Cj1521C SWALL:Q9PME3 (EMBL:AL139078) (143 aa) fasta scores: E(): 1.2e-11, 43.92% id in 107 aa, and to Wolinella succinogenes hypothetical protein Ws1443 SWALL:CAE10503 (EMBL:BX571660) (104 aa) fasta scores: E(): 1.3e-11, 40.77% id in 103 aa, and to Pasteurella multocida hypothetical protein Pm1125 SWALL:Q9CLT4 (EMBL:AE006153) (108 aa) fasta scores: E(): 3.3e-10, 35.51% id in 107 aa; hypothetical protein 4663648 3287761 BF9343_3846 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213531.1 4663316 R 272559 CDS YP_213532.1 60683388 3287762 complement(4663652..4664584) 1 NC_003228.3 Similar to Neisseria meningitidis hypothetical protein NMA0630 SWALL:Q9JVY0 (EMBL:AL162753) (304 aa) fasta scores: E(): 1.1e-28, 35.36% id in 311 aa, and to Pasteurella multocida hypothetical protein Pm1126 SWALL:Q9CLT3 (EMBL:AE006153) (343 aa) fasta scores: E(): 1.2e-28, 34.81% id in 293 aa; hypothetical protein 4664584 3287762 BF9343_3847 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213532.1 4663652 R 272559 CDS YP_213533.1 60683389 3287765 complement(4665619..4669929) 1 NC_003228.3 Codons 250-1141 are similar to codons 80-885 of Pasteurella multocida hypothetical protein Pm1127 SWALL:Q9CLT2 (EMBL:AE006153) (1056 aa) fasta scores: E(): 1e-17, 25.46% id in 923 aa; hypothetical protein 4669929 3287765 BF9343_3849 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213533.1 4665619 R 272559 CDS YP_213534.1 60683390 3287766 complement(4670007..4670291) 1 NC_003228.3 no significant database matches; hypothetical protein 4670291 3287766 BF9343_3850 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213534.1 4670007 R 272559 CDS YP_213535.1 60683391 3287767 4670328..4670540 1 NC_003228.3 no significant database matches; hypothetical protein 4670540 3287767 BF9343_3851 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213535.1 4670328 D 272559 CDS YP_213536.1 60683392 3286895 complement(4670552..4670845) 1 NC_003228.3 no significant database matches; hypothetical protein 4670845 3286895 BF9343_3852 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213536.1 4670552 R 272559 CDS YP_213537.1 60683393 3287769 complement(4670886..4672340) 1 NC_003228.3 Similar to Myxococcus xanthus alginate biosynthesis protein AlgI SWALL:Q93MR9 (EMBL:AF398184) (471 aa) fasta scores: E(): 4.1e-59, 36.66% id in 480 aa, and to Bacteroides thetaiotaomicron alginate O-acetylation protein BT2681 SWALL:Q8A4C2 (EMBL:AE016937) (495 aa) fasta scores: E(): 1.8e-183, 88.82% id in 483 aa, and to Porphyromonas gingivalis W83 alginate O-acetyltransferase, putative PG1184 SWALL:AAQ66282 (EMBL:AE017176) (511 aa) fasta scores: E(): 1.3e-93, 56.71% id in 499 aa; putative transmembrane polysaccharide modification protein 4672340 3287769 BF9343_3853 Bacteroides fragilis NCTC 9343 putative transmembrane polysaccharide modification protein YP_213537.1 4670886 R 272559 CDS YP_213538.1 60683394 3287770 complement(4672360..4673232) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative periplasmic protein BT2682 SWALL:Q8A4C1 (EMBL:AE016937) (288 aa) fasta scores: E(): 4.9e-83, 71.22% id in 278 aa; hypothetical protein 4673232 3287770 BF9343_3854 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213538.1 4672360 R 272559 CDS YP_213539.1 60683395 3287768 complement(4673243..4674685) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative periplasmic protein BT2683 SWALL:Q8A4C0 (EMBL:AE016937) (464 aa) fasta scores: E(): 7.4e-153, 79.82% id in 461 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1186 SWALL:AAQ66284 (EMBL:AE017176) (482 aa) fasta scores: E(): 2.2e-35, 34.32% id in 472 aa; putative transmembrane protein 4674685 3287768 BF9343_3855 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213539.1 4673243 R 272559 CDS YP_213540.1 60683396 3287772 complement(4674733..4675026) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2685 SWALL:AAO77791 (EMBL:AE016937) (97 aa) fasta scores: E(): 3.9e-35, 88.66% id in 97 aa; hypothetical protein 4675026 3287772 BF9343_3856 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213540.1 4674733 R 272559 CDS YP_213541.1 60683397 3287773 complement(4675045..4678203) 1 NC_003228.3 Similar to Rhizobium meliloti nodulation protein NolG precursor or NolH or NolI or RA0480 or SMA0875 SWALL:NOLG_RHIME (SWALL:P25197) (1065 aa) fasta scores: E(): 2.1e-97, 31.38% id in 1042 aa, and to Bacteroides thetaiotaomicron putative cation efflux transporter BT2686 SWALL:AAO77792 (EMBL:AE016937) (1052 aa) fasta scores: E(): 0, 92.01% id in 1052 aa; putative transmembrane Acr-type transport protein 4678203 3287773 BF9343_3857 Bacteroides fragilis NCTC 9343 putative transmembrane Acr-type transport protein YP_213541.1 4675045 R 272559 CDS YP_213542.1 60683398 3287771 complement(4678304..4679320) 1 NC_003228.3 Similar to Salmonella typhimurium putative membrane fusion protein silver resistance SilB precursor SWALL:SILB_SALTY (SWALL:Q9ZHD0) (430 aa) fasta scores: E(): 2.1e-10, 23.17% id in 315 aa, and to Bacteroides thetaiotaomicron cation efflux system protein BT2687 SWALL:Q8A4B6 (EMBL:AE016937) (338 aa) fasta scores: E(): 3.1e-102, 81.95% id in 338 aa; putative membrane fusion protein transporter 4679320 3287771 BF9343_3858 Bacteroides fragilis NCTC 9343 putative membrane fusion protein transporter YP_213542.1 4678304 R 272559 CDS YP_213543.1 60683399 3287775 complement(4679349..4680668) 1 NC_003228.3 Similar to Pseudomonas aeruginosa alkaline protease secretion protein AprF or pa1248 SWALL:APRF_PSEAE (SWALL:Q03027) (481 aa) fasta scores: E(): 2.9e-10, 20.58% id in 413 aa, and to Bacteroides thetaiotaomicron outer membrane efflux protein BT2688 SWALL:Q8A4B5 (EMBL:AE016937) (448 aa) fasta scores: E(): 1e-85, 56.91% id in 441 aa; putative outer membrane efflux protein 4680668 3287775 BF9343_3859 Bacteroides fragilis NCTC 9343 putative outer membrane efflux protein YP_213543.1 4679349 R 272559 CDS YP_213544.1 60683400 3287776 complement(4680752..4681396) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2689 SWALL:Q8A4B4 (EMBL:AE016937) (215 aa) fasta scores: E(): 2.5e-52, 68.39% id in 212 aa, and to Leptospira interrogans transcriptional regulator, TetR family La3845 SWALL:Q8EZK8 (EMBL:AE011539) (210 aa) fasta scores: E(): 7.6e-06, 26.94% id in 167 aa; putative TetR transcriptional regulator 4681396 3287776 BF9343_3860 Bacteroides fragilis NCTC 9343 putative TetR transcriptional regulator YP_213544.1 4680752 R 272559 CDS YP_213545.1 60683401 3287901 complement(4681707..4683203) 1 NC_003228.3 Similar to Bacillus subtilis histidine ammonia-lyase HutH or BSU39350 SWALL:HUTH_BACSU (SWALL:P10944) (508 aa) fasta scores: E(): 8.9e-73, 44.05% id in 488 aa, and to Bacteroides thetaiotaomicron histidine ammonia-lyase BT2690 SWALL:Q8A4B3 (EMBL:AE016937) (499 aa) fasta scores: E(): 7.5e-177, 90.32% id in 496 aa, and to Porphyromonas gingivalis W83 histidine ammonia-lyase HutH or PG0324 SWALL:AAQ65538 (EMBL:AE017173) (497 aa) fasta scores: E(): 5.2e-132, 67.76% id in 487 aa; putative histidine ammonia-lyase 4683203 hutH 3287901 hutH Bacteroides fragilis NCTC 9343 putative histidine ammonia-lyase YP_213545.1 4681707 R 272559 CDS YP_213546.1 60683402 3287774 complement(4683200..4683829) 1 NC_003228.3 Similar to Methylobacterium extorquens methenyltetrahydrofolate cyclohydrolase FchA SWALL:FCHA_METEX (SWALL:Q49135) (208 aa) fasta scores: E(): 8.7e-22, 40.38% id in 208 aa, and to Bacteroides thetaiotaomicron methenyltetrahydrofolate cyclohydrolase BT2691 SWALL:Q8A4B2 (EMBL:AE016937) (209 aa) fasta scores: E(): 7.6e-55, 74.87% id in 207 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0325 SWALL:AAQ65539 (EMBL:AE017173) (209 aa) fasta scores: E(): 8.9e-36, 56.09% id in 205 aa; putative formiminotransferase-cyclodeaminase 4683829 3287774 BF9343_3862 Bacteroides fragilis NCTC 9343 putative formiminotransferase-cyclodeaminase YP_213546.1 4683200 R 272559 CDS YP_213547.1 60683403 3289168 complement(4683864..4685117) 1 NC_003228.3 Similar to Bacillus halodurans imidazolonepropionase HutI or BH1984 SWALL:HUTI_BACHD (SWALL:Q9KBE4) (426 aa) fasta scores: E(): 6.8e-63, 44.39% id in 410 aa, and to Bacteroides thetaiotaomicron imidazolonepropionase BT2692 SWALL:Q8A4B1 (EMBL:AE016937) (417 aa) fasta scores: E(): 2.8e-133, 81.68% id in 415 aa, and to Clostridium tetani imidazolonepropionase CTC02320 SWALL:Q891P9 (EMBL:AE015944) (419 aa) fasta scores: E(): 2.2e-88, 59.16% id in 409 aa; putative imidazolonepropionase 4685117 hutI 3289168 hutI Bacteroides fragilis NCTC 9343 putative imidazolonepropionase YP_213547.1 4683864 R 272559 CDS YP_213548.1 60683404 3288994 complement(4685124..4686026) 1 NC_003228.3 Similar to C-terminus of Mus musculus formimidoyltransferase-cyclodeaminase FtcD SWALL:FTCD_MOUSE (SWALL:Q91XD4) (541 aa) fasta scores: E(): 1.4e-42, 41.72% id in 302 aa, and to entire Bacteroides thetaiotaomicron formiminotransferase-cyclodeaminase BT2693 SWALL:Q8A4B0 (EMBL:AE016937) (300 aa) fasta scores: E(): 7.5e-104, 88.66% id in 300 aa, and to Porphyromonas gingivalis W83 formiminotransferase-cyclodeaminase-related protein PG0329 SWALL:AAQ65543 (EMBL:AE017173) (300 aa) fasta scores: E(): 2.4e-85, 70.33% id in 300 aa; putative formimidoyltransferase-cyclodeaminase 4686026 ftcD 3288994 ftcD Bacteroides fragilis NCTC 9343 putative formimidoyltransferase-cyclodeaminase YP_213548.1 4685124 R 272559 CDS YP_213549.1 60683405 3289285 complement(4686095..4688080) 1 NC_003228.3 Similar to Bacillus subtilis urocanate hydratase HutU or ee57a or BSU39360 SWALL:HUTU_BACSU (SWALL:P25503) (552 aa) fasta scores: E(): 1.1e-34, 34.79% id in 546 aa, and to Bacteroides thetaiotaomicron putative urocanate hydratase BT2694 SWALL:Q8A4A9 (EMBL:AE016937) (663 aa) fasta scores: E(): 0, 87.29% id in 661 aa. Possible alternative start site at codon 61; putative urocanate hydratase 4688080 hutU 3289285 hutU Bacteroides fragilis NCTC 9343 putative urocanate hydratase YP_213549.1 4686095 R 272559 CDS YP_213550.1 60683406 3287778 complement(4688279..4688911) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2695 SWALL:Q8A4A8 (EMBL:AE016937) (222 aa) fasta scores: E(): 2.5e-44, 55.39% id in 213 aa; hypothetical protein 4688911 3287778 BF9343_3866 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213550.1 4688279 R 272559 CDS YP_213551.1 60683407 3287777 4689470..4691284 1 NC_003228.3 Codons 259 to C-terminus are similar to codons 445-760 of Bacillus subtilis DNA mismatch repair protein MutS or BSU17040 SWALL:MUTS_BACSU (SWALL:P49849) (858 aa) fasta scores: E(): 6.4e-09, 27.89% id in 337 aa, and to Bacteroides thetaiotaomicron DNA mismatch repair protein MutS BT2697 SWALL:Q8A4A6 (EMBL:AE016937) (604 aa) fasta scores: E(): 4e-157, 66.66% id in 603 aa, and to Clostridium tetani DNA mismatch repair protein HexA or CTC00231 SWALL:Q899F0 (EMBL:AE015936) (603 aa) fasta scores: E(): 2.3e-55, 31.45% id in 604 aa; putative transmembrane DNA mismatch repair-like protein 4691284 3287777 BF9343_3867 Bacteroides fragilis NCTC 9343 putative transmembrane DNA mismatch repair-like protein YP_213551.1 4689470 D 272559 CDS YP_213552.1 60683408 3287780 complement(4691316..4691855) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2698 SWALL:Q8A4A5 (EMBL:AE016937) (179 aa) fasta scores: E(): 2.2e-51, 72.88% id in 177 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3822 SWALL:Q8A145 (EMBL:AE016942) (176 aa) fasta scores: E(): 1.2e-19, 40.11% id in 167 aa; putative transmembrane protein 4691855 3287780 BF9343_3868 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213552.1 4691316 R 272559 CDS YP_213553.1 60683409 3287782 complement(4691964..4692371) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2699 SWALL:Q8A4A4 (EMBL:AE016937) (131 aa) fasta scores: E(): 1.2e-24, 54.07% id in 135 aa; hypothetical protein 4692371 3287782 BF9343_3869 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213553.1 4691964 R 272559 CDS YP_213554.1 60683410 3288860 complement(4692510..4692995) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L17 RplQ or B3294 or C4055 or Z4664 or ECS4159 or SF3326 or s4436 SWALL:RL17_ECOLI (SWALL:P02416) (127 aa) fasta scores: E(): 7.5e-18, 51.66% id in 120 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L17 BT2700 SWALL:Q8A4A3 (EMBL:AE016937) (163 aa) fasta scores: E(): 1.6e-53, 96.31% id in 163 aa; putative 50S ribosomal protein L17 4692995 rplQ 3288860 rplQ Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L17 YP_213554.1 4692510 R 272559 CDS YP_213555.1 60683411 3288873 complement(4692999..4693991) 1 NC_003228.3 Similar to Bacillus subtilis DNA-directed RNA polymerase alpha chain RpoA or BSU01430 SWALL:RPOA_BACSU (SWALL:P20429) (314 aa) fasta scores: E(): 1.4e-41, 43.34% id in 323 aa, and to Bacteroides thetaiotaomicron DNA-directed RNA polymerase alpha chain BT2701 SWALL:Q8A4A2 (EMBL:AE016937) (330 aa) fasta scores: E(): 1.2e-120, 98.18% id in 330 aa; putative DNA-directed RNA polymerase alpha chain 4693991 rpoA 3288873 rpoA Bacteroides fragilis NCTC 9343 putative DNA-directed RNA polymerase alpha chain YP_213555.1 4692999 R 272559 CDS YP_213556.1 60683412 3288440 complement(4694003..4694608) 1 NC_003228.3 Similar to Bacillus subtilis 30s ribosomal protein S4 RpsD or BSU29660 SWALL:RS4_BACSU (SWALL:P21466) (199 aa) fasta scores: E(): 2e-33, 49% id in 200 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S4 BT2702 SWALL:Q8A4A1 (EMBL:AE016937) (201 aa) fasta scores: E(): 2.4e-74, 96.02% id in 201 aa; putative 30S ribosomal protein S4 4694608 rpsD 3288440 rpsD Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S4 YP_213556.1 4694003 R 272559 CDS YP_213557.1 60683413 3288072 complement(4694728..4695117) 1 NC_003228.3 Similar to Bacillus subtilis 30S ribosomal protein S11 RpsK or BSU01420 SWALL:RS11_BACSU (SWALL:P04969) (131 aa) fasta scores: E(): 3.5e-26, 57.03% id in 128 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S11 RpsK or BT2703 SWALL:RS11_BACTN (SWALL:Q8A4A0) (129 aa) fasta scores: E(): 2e-48, 100% id in 129 aa; putative 30S ribosomal protein S11 4695117 rpsK 3288072 rpsK Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S11 YP_213557.1 4694728 R 272559 CDS YP_213558.1 60683414 3288330 complement(4695129..4695509) 1 NC_003228.3 Similar to Bacillus stearothermophilus 30S ribosomal protein S13 RpsM SWALL:RS13_BACST (SWALL:P15757) (119 aa) fasta scores: E(): 2.4e-26, 66.66% id in 120 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S13 RpsM or BT2704 SWALL:RS13_BACTN (SWALL:Q8A499) (126 aa) fasta scores: E(): 2.4e-44, 99.2% id in 126 aa, and to Porphyromonas gingivalis W83 ribosomal protein S13 RpsM or PG1914 SWALL:AAQ66895 (EMBL:AE017178) (126 aa) fasta scores: E(): 3.2e-40, 88.09% id in 126 aa; putative 30S ribosomal protein S13 4695509 rpsM 3288330 rpsM Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S13 YP_213558.1 4695129 R 272559 CDS YP_213559.1 60683415 3288756 complement(4695543..4695659) 1 NC_003228.3 Similar to Lactococcus lactis 50S ribosomal protein L36 RpmJ or ll2071 or sp0233 or spr0212 SWALL:RL36_LACLA (SWALL:P27146) (38 aa) fasta scores: E(): 1.9e-07, 60.52% id in 38 aa, and to Porphyromonas gingivalis W83 ribosomal protein L36 RpmJ or PG1915 SWALL:AAQ66896 (EMBL:AE017178) (38 aa) fasta scores: E(): 5.2e-15, 94.73% id in 38 aa, and to Synechocystis sp. 50S ribosomal protein L36 RpmJ or rpl36 or sml0006 SWALL:RL36_SYNY3 (SWALL:P73300) (38 aa) fasta scores: E(): 3.6e-08, 60.52% id in 38 aa; putative 50S ribosomal protein L36 4695659 rpmJ 3288756 rpmJ Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L36 YP_213559.1 4695543 R 272559 CDS YP_213560.1 60683416 3287903 complement(4695668..4695886) 1 NC_003228.3 Similar to Bacillus subtilis translation initiation factor IF-1 InfA or BSU01390 SWALL:IF1_BACSU (SWALL:P20458) (71 aa) fasta scores: E(): 2.8e-18, 69.01% id in 71 aa, and to Bacteroides thetaiotaomicron translation initiation factor IF-1 BT2705 SWALL:Q8A498 (EMBL:AE016937) (72 aa) fasta scores: E(): 2.3e-26, 100% id in 72 aa, and to Porphyromonas gingivalis W83 translation initiation factor IF-1 InfA or PG1916 SWALL:AAQ66897 (EMBL:AE017178) (72 aa) fasta scores: E(): 2.2e-23, 87.5% id in 72 aa; putative translation initiation factor IF-1 4695886 infA 3287903 infA Bacteroides fragilis NCTC 9343 putative translation initiation factor IF-1 YP_213560.1 4695668 R 272559 CDS YP_213561.1 60683417 3289229 complement(4695890..4696687) 1 NC_003228.3 Similar to Salmonella typhimurium, and Salmonella typhi methionine aminopeptidase Map or PepM or STM0215 or STY0238 or t0216 SWALL:AMPM_SALTY (SWALL:P10882) (263 aa) fasta scores: E(): 8e-33, 41.27% id in 252 aa, and to Bacteroides thetaiotaomicron methionine aminopeptidase BT2706 SWALL:Q8A497 (EMBL:AE016937) (265 aa) fasta scores: E(): 4.4e-98, 94.34% id in 265 aa; putative methionine aminopeptidase 4696687 map 3289229 map Bacteroides fragilis NCTC 9343 putative methionine aminopeptidase YP_213561.1 4695890 R 272559 CDS YP_213562.1 60683418 3287524 complement(4696702..4698048) 1 NC_003228.3 Similar to Mycobacterium tuberculosis, and Mycobacterium bovis preprotein translocase SecY subunit or Rv0732 or MT0756.1 or MTV041.06 or MB0753 SWALL:SECY_MYCTU (SWALL:P94926) (441 aa) fasta scores: E(): 1.5e-66, 42.98% id in 435 aa, and to Bacteroides thetaiotaomicron preprotein translocase SecY subunit BT2707 SWALL:Q8A496 (EMBL:AE016937) (447 aa) fasta scores: E(): 5e-161, 92.87% id in 449 aa; putative transmembrane preprotein translocase SecY subunit 4698048 secY 3287524 secY Bacteroides fragilis NCTC 9343 putative transmembrane preprotein translocase SecY subunit YP_213562.1 4696702 R 272559 CDS YP_213563.1 60683419 3288864 complement(4698053..4698499) 1 NC_003228.3 Similar to Bacillus subtilis 50s ribosomal protein L15 RplO or BSU01350 SWALL:RL15_BACSU (SWALL:P19946) (146 aa) fasta scores: E(): 2.4e-20, 53.47% id in 144 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L15 BT2708 SWALL:Q8A495 (EMBL:AE016937) (148 aa) fasta scores: E(): 7.6e-43, 88.51% id in 148 aa; putative 50S ribosomal protein L15 4698499 rplO 3288864 rplO Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L15 YP_213563.1 4698053 R 272559 CDS YP_213564.1 60683420 3288624 complement(4698530..4698706) 1 NC_003228.3 Similar to Bacillus stearothermophilus 50S ribosomal protein L30 RpmD SWALL:RL30_BACST (SWALL:P02431) (62 aa) fasta scores: E(): 1.2e-05, 45.28% id in 53 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L30 BT2709 SWALL:Q8A494 (EMBL:AE016937) (58 aa) fasta scores: E(): 1.3e-19, 98.27% id in 58 aa; putative 50S ribosomal protein L30 4698706 rpmD 3288624 rpmD Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L30 YP_213564.1 4698530 R 272559 CDS YP_213565.1 60683421 3288742 complement(4698717..4699235) 1 NC_003228.3 Similar to Bacillus subtilis 30S ribosomal protein S5 RpsE or SpcA or BSU01330 SWALL:RS5_BACSU (SWALL:P21467) (166 aa) fasta scores: E(): 1.8e-26, 53.5% id in 157 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S5 BT2710 SWALL:Q8A493 (EMBL:AE016937) (172 aa) fasta scores: E(): 1.1e-55, 96.51% id in 172 aa; putative 30S ribosomal protein S5 4699235 rpsE 3288742 rpsE Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S5 YP_213565.1 4698717 R 272559 CDS YP_213566.1 60683422 3288851 complement(4699241..4699585) 1 NC_003228.3 Similar to Bacillus subtilis 50S ribosomal protein L18 RplR or BSU01320 SWALL:RL18_BACSU (SWALL:P46899) (120 aa) fasta scores: E(): 5.5e-20, 60.34% id in 116 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L18 BT2711 SWALL:Q8A492 (EMBL:AE016937) (114 aa) fasta scores: E(): 3.5e-35, 92.98% id in 114 aa; putative 50S ribosomal protein L18 4699585 rplR 3288851 rplR Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L18 YP_213566.1 4699241 R 272559 CDS YP_213567.1 60683423 3288875 complement(4699607..4700176) 1 NC_003228.3 Similar to Bacillus stearothermophilus 50S ribosomal protein L6 RplF SWALL:RL6_BACST (SWALL:P02391) (177 aa) fasta scores: E(): 2.7e-28, 47.82% id in 184 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L6 BT2712 SWALL:Q8A491 (EMBL:AE016937) (189 aa) fasta scores: E(): 1e-69, 96.29% id in 189 aa; putative 50S ribosomal protein L6 4700176 rplF 3288875 rplF Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L6 YP_213567.1 4699607 R 272559 CDS YP_213568.1 60683424 3288767 complement(4700192..4700587) 1 NC_003228.3 Similar to Bacillus subtilis 30S ribosomal protein S8 RpsH or BSU01300 SWALL:RS8_BACSU (SWALL:P12879) (131 aa) fasta scores: E(): 4.8e-22, 56.48% id in 131 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S8 BT2713 SWALL:Q8A490 (EMBL:AE016937) (131 aa) fasta scores: E(): 9.4e-45, 97.71% id in 131 aa; putative 30S ribosomal protein S8 4700587 rpsH 3288767 rpsH Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S8 YP_213568.1 4700192 R 272559 CDS YP_213569.1 60683425 3288120 complement(4700642..4700941) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 30S ribosomal protein S14 RpsN or B3307 or C4071 or Z4677 or ECS4172 or SF3339 or s4423 SWALL:RS14_ECOLI (SWALL:P02370) (100 aa) fasta scores: E(): 1.6e-16, 54% id in 100 aa, and to Bacteroides thetaiotaomicron chloroplast 30S ribosomal protein S14 BT2714 SWALL:Q8A489 (EMBL:AE016937) (99 aa) fasta scores: E(): 1.1e-34, 94.94% id in 99 aa, and to Fusobacterium nucleatum Ssu ribosomal protein s14p FN1631 SWALL:Q8RIG9 (EMBL:AE010470) (95 aa) fasta scores: E(): 1.4e-19, 58.58% id in 99 aa; putative 30S ribosomal protein S14 4700941 rpsN 3288120 rpsN Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S14 YP_213569.1 4700642 R 272559 CDS YP_213570.1 60683426 3288872 complement(4700948..4701505) 1 NC_003228.3 Similar to Bacillus subtilis 50S ribosomal protein L5 RplE or BSU01280 SWALL:RL5_BACSU (SWALL:P12877) (179 aa) fasta scores: E(): 2.5e-35, 56.57% id in 175 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L5 BT2715 SWALL:Q8A488 (EMBL:AE016937) (185 aa) fasta scores: E(): 1.2e-64, 97.83% id in 185 aa; putative 50S ribosomal protein L5 4701505 rplE 3288872 rplE Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L5 YP_213570.1 4700948 R 272559 CDS YP_213571.1 60683427 3288845 complement(4701505..4701825) 1 NC_003228.3 Similar to Bacillus subtilis 50S ribosomal protein L24 RplX or BSU01270 SWALL:RL24_BACSU (SWALL:P12876) (103 aa) fasta scores: E(): 1.6e-17, 58% id in 100 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L24 BT2716 SWALL:Q8A487 (EMBL:AE016937) (105 aa) fasta scores: E(): 1.8e-32, 96.19% id in 105 aa; putative 50S ribosomal protein L24 4701825 rplX 3288845 rplX Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L24 YP_213571.1 4701505 R 272559 CDS YP_213572.1 60683428 3288863 complement(4701846..4702211) 1 NC_003228.3 Similar to Bacillus stearothermophilus 50S ribosomal protein L14 RplN SWALL:RL14_BACST (SWALL:P04450) (122 aa) fasta scores: E(): 1.1e-28, 64.75% id in 122 aa, and identical to Bacteroides thetaiotaomicron 50S ribosomal protein L14 BT2717 SWALL:Q8A486 (EMBL:AE016937) (121 aa) fasta scores: E(): 1.5e-44, 100% id in 121 aa; putative 50S ribosomal protein L14 4702211 rplN 3288863 rplN Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L14 YP_213572.1 4701846 R 272559 CDS YP_213573.1 60683429 3288148 complement(4702214..4702483) 1 NC_003228.3 Similar to Bacillus stearothermophilus 30S ribosomal protein S17 rpsQ SWALL:RS17_BACST (SWALL:P23828) (86 aa) fasta scores: E(): 4.3e-17, 64.19% id in 81 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S17 BT2718 SWALL:Q8A485 (EMBL:AE016937) (89 aa) fasta scores: E(): 3.5e-34, 98.87% id in 89 aa. Possible alternative start site at codon 5; putative 30S ribosomal protein S17 4702483 rpsQ 3288148 rpsQ Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S17 YP_213573.1 4702214 R 272559 CDS YP_213574.1 60683430 3288850 complement(4702480..4702677) 1 NC_003228.3 Similar to Bacillus stearothermophilus 50S ribosomal protein L29 RpmC SWALL:RL29_BACST (SWALL:P04457) (66 aa) fasta scores: E(): 0.0018, 37.09% id in 62 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L29 RpmC or BT2719 SWALL:RL29_BACTN (SWALL:Q8A484) (65 aa) fasta scores: E(): 3.2e-20, 93.84% id in 65 aa, and to Porphyromonas gingivalis W83 ribosomal protein L29 RpmC or PG1930 SWALL:AAQ66911 (EMBL:AE017178) (64 aa) fasta scores: E(): 6.3e-12, 63.49% id in 63 aa; putative 50S ribosomal protein L29 4702677 rpmC 3288850 rpmC Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L29 YP_213574.1 4702480 R 272559 CDS YP_213575.1 60683431 3288858 complement(4702683..4703117) 1 NC_003228.3 Similar to Bacillus subtilis 50S ribosomal protein L16 RplP or BSU01230 SWALL:RL16_BACSU (SWALL:P14577) (144 aa) fasta scores: E(): 1.9e-30, 61.02% id in 136 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L16 BT2720 SWALL:Q8A483 (EMBL:AE016937) (144 aa) fasta scores: E(): 1.5e-52, 99.3% id in 144 aa; putative 50S ribosomal protein L16 4703117 rplP 3288858 rplP Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L16 YP_213575.1 4702683 R 272559 CDS YP_213576.1 60683432 3288750 complement(4703141..4703875) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi 30S ribosomal protein S3 SWALL:RS3_ECOLI (SWALL:P02352) (232 aa) fasta scores: E(): 5.5e-40, 53.84% id in 208 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S3 BT2721 SWALL:Q8A482 (EMBL:AE016937) (243 aa) fasta scores: E(): 1.3e-87, 99.18% id in 244 aa; putative 30S ribosomal protein S3 4703875 rpsC 3288750 rpsC Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S3 YP_213576.1 4703141 R 272559 CDS YP_213577.1 60683433 3288855 complement(4703881..4704237) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L22 SWALL:RL22_ECOLI (SWALL:P02423) (110 aa) fasta scores: E(): 3.5e-13, 46.29% id in 108 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L22 BT2722 SWALL:Q8A481 (EMBL:AE016937) (136 aa) fasta scores: E(): 7.7e-44, 98.3% id in 118 aa; putative 50S ribosomal protein L22 4704237 rplV 3288855 rplV Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L22 YP_213577.1 4703881 R 272559 CDS YP_213578.1 60683434 3288949 complement(4704327..4704596) 1 NC_003228.3 Similar to Bacillus stearothermophilus 30S ribosomal protein S19 RpsS SWALL:RS19_BACST (SWALL:P12731) (91 aa) fasta scores: E(): 1.4e-21, 65.51% id in 87 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S19 BT2723 SWALL:Q8A480 (EMBL:AE016937) (89 aa) fasta scores: E(): 6.5e-33, 94.38% id in 89 aa; putative 30S ribosomal protein S19 4704596 rpsS 3288949 rpsS Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S19 YP_213578.1 4704327 R 272559 CDS YP_213579.1 60683435 3288883 complement(4704617..4705441) 1 NC_003228.3 Similar to Bacillus halodurans 50S ribosomal protein L2 RplB or BH0137 SWALL:RL2_BACHD (SWALL:Q9Z9L1) (276 aa) fasta scores: E(): 5.6e-60, 61.23% id in 276 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L2 BT2724 SWALL:Q8A479 (EMBL:AE016937) (274 aa) fasta scores: E(): 1.8e-100, 97.44% id in 274 aa; putative 50S ribosomal protein L2 4705441 rplB 3288883 rplB Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L2 YP_213579.1 4704617 R 272559 CDS YP_213580.1 60683436 3288854 complement(4705447..4705737) 1 NC_003228.3 Similar to Yersinia enterocolitica 50S ribosomal protein L23 RplW SWALL:RL23_YEREN (SWALL:P41278) (100 aa) fasta scores: E(): 1.6e-06, 41.3% id in 92 aa, and to Bacteroides thetaiotaomicron 50s ribosomal protein L23 BT2725 SWALL:Q8A478 (EMBL:AE016937) (96 aa) fasta scores: E(): 4.4e-33, 96.87% id in 96 aa; putative 50S ribosomal protein L23 4705737 rplW 3288854 rplW Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L23 YP_213580.1 4705447 R 272559 CDS YP_213581.1 60683437 3288881 complement(4705754..4706380) 1 NC_003228.3 Similar to Bacillus stearothermophilus 50S ribosomal protein L4 RplD SWALL:RL4_BACST (SWALL:P28601) (207 aa) fasta scores: E(): 1.4e-30, 48.54% id in 206 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L4 BT2726 SWALL:Q8A477 (EMBL:AE016937) (208 aa) fasta scores: E(): 1.5e-69, 94.23% id in 208 aa; putative 50S ribosomal protein L4 4706380 rplD 3288881 rplD Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L4 YP_213581.1 4705754 R 272559 CDS YP_213582.1 60683438 3288877 complement(4706380..4706997) 1 NC_003228.3 Similar to Bacillus subtilis 50S ribosomal protein L3 RplC or BSU01160 SWALL:RL3_BACSU (SWALL:P42920) (209 aa) fasta scores: E(): 1.9e-35, 52.21% id in 203 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L3 BT2727 SWALL:Q8A476 (EMBL:AE016937) (205 aa) fasta scores: E(): 7.1e-75, 93.65% id in 205 aa; putative 50S ribosomal protein L3 4706997 rplC 3288877 rplC Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L3 YP_213582.1 4706380 R 272559 CDS YP_213583.1 60683439 3288494 complement(4707016..4707321) 1 NC_003228.3 Similar to Bacillus subtilis 30S ribosomal protein S10 RpsJ or TetA or BSU01150 SWALL:RS10_BACSU (SWALL:P21471) (101 aa) fasta scores: E(): 1e-20, 62.62% id in 99 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S10 BT2728 SWALL:Q8A475 (EMBL:AE016937) (101 aa) fasta scores: E(): 1.6e-34, 99.01% id in 101 aa; putative 30S ribosomal protein S10 4707321 rpsJ 3288494 rpsJ Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S10 YP_213583.1 4707016 R 272559 CDS YP_213584.1 60683440 3286685 complement(4707403..4709520) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 elongation factor G FusA or Fus or Far or B3340 or C4112 or Z4698 or ECS4191 SWALL:EFG_ECOLI (SWALL:P02996) (703 aa) fasta scores: E(): 8.5e-140, 56.79% id in 699 aa, and to Bacteroides thetaiotaomicron elongation factor G FusA or BT2729 SWALL:EFG_BACTN (SWALL:Q8A474) (705 aa) fasta scores: E(): 0, 97.02% id in 705 aa, and to Porphyromonas gingivalis W83 translation elongation factor G FusA or PG1940 SWALL:AAQ66921 (EMBL:AE017178) (707 aa) fasta scores: E(): 1.5e-202, 80.19% id in 702 aa; putative translation elongation factor G 4709520 fusA 3286685 fusA Bacteroides fragilis NCTC 9343 putative translation elongation factor G YP_213584.1 4707403 R 272559 CDS YP_213585.1 60683441 3288797 complement(4709574..4710050) 1 NC_003228.3 Similar to Escherichia coli 30S ribosomal protein S7 RpsG or B3341 SWALL:RS7_ECOLI (SWALL:P02359) (178 aa) fasta scores: E(): 7.9e-26, 53.16% id in 158 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S7 BT2730 SWALL:Q8A473 (EMBL:AE016937) (158 aa) fasta scores: E(): 1.7e-56, 97.46% id in 158 aa, and to Porphyromonas gingivalis W83 ribosomal protein S7 RpsG or PG1941 SWALL:AAQ66922 (EMBL:AE017178) (158 aa) fasta scores: E(): 6.2e-49, 84.17% id in 158 aa; putative 30S ribosomal protein S7 4710050 rpsG 3288797 rpsG Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S7 YP_213585.1 4709574 R 272559 CDS YP_213586.1 60683442 3288132 complement(4710210..4710611) 1 NC_003228.3 Similar to Chlamydomonas reinhardtii chloroplast 30S ribosomal protein S12 Rps12 SWALL:RR12_CHLRE (SWALL:P14149) (132 aa) fasta scores: E(): 4.2e-34, 71.97% id in 132 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S12 BT2731 SWALL:Q8A472 (EMBL:AE016937) (133 aa) fasta scores: E(): 1.4e-49, 100% id in 133 aa, and to Porphyromonas gingivalis W83 ribosomal protein S12 RpsL or PG1942 SWALL:AAQ66923 (EMBL:AE017178) (134 aa) fasta scores: E(): 3.2e-45, 91.72% id in 133 aa; putative 30S ribosomal protein S12 4710611 rpsL 3288132 rpsL Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S12 YP_213586.1 4710210 R 272559 CDS YP_213587.1 60683443 3287779 complement(4710859..4711170) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2732 SWALL:Q8A471 (EMBL:AE016937) (101 aa) fasta scores: E(): 1.6e-27, 79.61% id in 103 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1219 SWALL:AAQ66309 (EMBL:AE017176) (103 aa) fasta scores: E(): 2.9e-12, 49.05% id in 106 aa; hypothetical protein 4711170 3287779 BF9343_3903 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213587.1 4710859 R 272559 CDS YP_213588.1 60683444 3287781 4711182..4711343 1 NC_003228.3 no significant database matches; hypothetical protein 4711343 3287781 BF9343_3904 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213588.1 4711182 D 272559 CDS YP_213589.1 60683445 3287783 complement(4711484..4711744) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3737 SWALL:Q8A1C9 (EMBL:AE016942) (98 aa) fasta scores: E(): 1.4e-08, 51.85% id in 81 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT1435 SWALL:Q8A7T9 (EMBL:AE016931) (95 aa) fasta scores: E(): 1.5e-08, 52.8% id in 89 aa; hypothetical protein 4711744 3287783 BF9343_3905 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213589.1 4711484 R 272559 CDS YP_213590.1 60683446 3287642 complement(4711807..4712052) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1436 SWALL:Q8A7T8 (EMBL:AE016931) (81 aa) fasta scores: E(): 1.3e-21, 80.24% id in 81 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2209 SWALL:AAQ67150 (EMBL:AE017179) (84 aa) fasta scores: E(): 2.1e-08, 48.68% id in 76 aa; putative transmembrane protein, transglycosylase associated 4712052 3287642 BF9343_3906 Bacteroides fragilis NCTC 9343 putative transmembrane protein, transglycosylase associated YP_213590.1 4711807 R 272559 CDS YP_213591.1 60683447 3287641 4712244..4712753 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2366 SWALL:Q8A576 (EMBL:AE016935) (187 aa) fasta scores: E(): 2.8e-14, 34.61% id in 156 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, putative regulatory protein with a camp-binding domain BT1545 SWALL:Q8A7H9 (EMBL:AE016932) (187 aa) fasta scores: E(): 4e-06, 25.45% id in 165 aa; hypothetical protein 4712753 3287641 BF9343_3907 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213591.1 4712244 D 272559 CDS YP_213592.1 60683448 3287645 4712882..4714018 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2255 SWALL:Q8A5I4 (EMBL:AE016935) (386 aa) fasta scores: E(): 1.8e-45, 37.3% id in 386 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT4450 SWALL:Q89ZC7 (EMBL:AE016945) (411 aa) fasta scores: E(): 3.3e-24, 32.82% id in 393 aa; putative transmembrane protein 4714018 3287645 BF9343_3908 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213592.1 4712882 D 272559 CDS YP_213593.1 60683449 3288640 complement(4714095..4718378) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA-directed RNA polymerase beta' chain RpoC or TabB or B3988 or Z5561 or ECS4911 or SF4061 or s3674 SWALL:RPOC_ECOLI (SWALL:P00577) (1407 aa) fasta scores: E(): 4.1e-112, 49.36% id in 1426 aa, and to Bacteroides thetaiotaomicron DNA-directed RNA polymerase beta' chain BT2733 SWALL:Q8A470 (EMBL:AE016937) (1427 aa) fasta scores: E(): 0, 96.63% id in 1427 aa, and to Porphyromonas gingivalis W83 DNA-directed RNA polymerase, beta' subunit RpoC or PG0395 SWALL:AAQ65600 (EMBL:AE017173) (1433 aa) fasta scores: E(): 0, 79.86% id in 1430 aa; putative DNA-directed RNA polymerase beta' chain 4718378 rpoC 3288640 rpoC Bacteroides fragilis NCTC 9343 putative DNA-directed RNA polymerase beta' chain YP_213593.1 4714095 R 272559 CDS YP_213594.1 60683450 3288504 complement(4718525..4722337) 1 NC_003228.3 Similar to Chlamydia muridarum DNA-directed RNA polymerase beta chain RpoB or tc0589 SWALL:RPOB_CHLMU (SWALL:P56869) (1252 aa) fasta scores: E(): 4.8e-179, 48.16% id in 1281 aa, and to Bacteroides thetaiotaomicron DNA-directed RNA polymerase beta chain BT2734 SWALL:Q8A469 (EMBL:AE016937) (1270 aa) fasta scores: E(): 0, 96.29% id in 1270 aa; putative DNA-directed RNA polymerase beta chain 4722337 rpoB 3288504 rpoB Bacteroides fragilis NCTC 9343 putative DNA-directed RNA polymerase beta chain YP_213594.1 4718525 R 272559 CDS YP_213595.1 60683451 3288871 complement(4722442..4722816) 1 NC_003228.3 Similar to Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L7/L12 RplL or STM4152 or STMf1.11 or STY3733 or t3475 SWALL:RL7_SALTY (SWALL:P18081) (120 aa) fasta scores: E(): 2.8e-16, 60.34% id in 116 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L7/L12 BT2735 SWALL:Q8A468 (EMBL:AE016937) (124 aa) fasta scores: E(): 4.1e-33, 98.38% id in 124 aa, and to Porphyromonas gingivalis W83 ribosomal protein L7/L12 RplL or PG0393 SWALL:AAQ65598 (EMBL:AE017173) (125 aa) fasta scores: E(): 9e-28, 86.4% id in 125 aa; putative 50S ribosomal protein L7/L12 4722816 rplL 3288871 rplL Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L7/L12 YP_213595.1 4722442 R 272559 CDS YP_213596.1 60683452 3288880 complement(4722865..4723377) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L10 RplJ or B3985 or C4941 or Z5558 or ECS4908 or SF4058 or s3677 SWALL:RL10_ECOLI (SWALL:P02408) (164 aa) fasta scores: E(): 0.00032, 26.95% id in 141 aa, and to Bacteroides thetaiotaomicron ribosomal protein L10 BT2736 SWALL:AAO77842 (EMBL:AE016937) (172 aa) fasta scores: E(): 4.2e-55, 91.76% id in 170 aa, and to Chlorobium tepidum 50S ribosomal protein L10 RplJ or CT0153 SWALL:RL10_CHLTE (SWALL:Q8KG17) (173 aa) fasta scores: E(): 3.4e-08, 33.91% id in 171 aa; putative 50S ribosomal protein L10 4723377 rplJ 3288880 rplJ Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L10 YP_213596.1 4722865 R 272559 CDS YP_213597.1 60683453 3288882 complement(4723393..4724091) 1 NC_003228.3 Similar to Bacillus stearothermophilus 50S ribosomal protein L1 RplA SWALL:RL1_BACST (SWALL:P04447) (232 aa) fasta scores: E(): 3.3e-41, 53.95% id in 215 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L1 RplA or BT2737 SWALL:AAO77843 (EMBL:AE016937) (232 aa) fasta scores: E(): 8.1e-77, 96.98% id in 232 aa, and to Chlorobium tepidum 50S ribosomal protein L1 RplA or CT0152 SWALL:Q8KG18 (EMBL:AE012794) (231 aa) fasta scores: E(): 5.5e-45, 56.69% id in 224 aa; putative 50S ribosomal protein L1 4724091 rplA 3288882 rplA Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L1 YP_213597.1 4723393 R 272559 CDS YP_213598.1 60683454 3288867 complement(4724107..4724550) 1 NC_003228.3 Similar to Bacillus subtilis 50s ribosomal protein L11 RplK or RelC or BSU01020 SWALL:RL11_BACSU (SWALL:Q06796) (140 aa) fasta scores: E(): 3.4e-30, 60.43% id in 139 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L11 BT2738 SWALL:Q8A465 (EMBL:AE016937) (147 aa) fasta scores: E(): 1.3e-54, 97.95% id in 147 aa, and to Porphyromonas gingivalis W83 ribosomal protein L11 RplK or PG0390 SWALL:AAQ65595 (EMBL:AE017173) (145 aa) fasta scores: E(): 7.9e-50, 88.19% id in 144 aa; putative 50S ribosomal protein L11 4724550 rplK 3288867 rplK Bacteroides fragilis NCTC 9343 putative 50S ribosomal protein L11 YP_213598.1 4724107 R 272559 CDS YP_213599.1 60683455 3288130 complement(4724611..4725153) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcription antitermination protein NusG or B3982 or Z5555 or ECS4905 or SF4055 or s3680 SWALL:NUSG_ECOLI (SWALL:P16921) (180 aa) fasta scores: E(): 1.6e-23, 43.57% id in 179 aa, and to Bacteroides thetaiotaomicron transcription anti-termination protein BT2739 SWALL:Q8A464 (EMBL:AE016937) (180 aa) fasta scores: E(): 5.4e-63, 96.11% id in 180 aa; putative transcription antitermination protein 4725153 nusG 3288130 nusG Bacteroides fragilis NCTC 9343 putative transcription antitermination protein YP_213599.1 4724611 R 272559 CDS YP_213600.1 60683456 3287222 complement(4725170..4725361) 1 NC_003228.3 Similar to, but slightly truncated at the N-terminus, Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 preprotein translocase SecE subunit or PrlG or B3981 or C4936 or Z5554 or ECS4904 SWALL:SECE_ECOLI (SWALL:P16920) (127 aa) fasta scores: E(): 0.54, 31.25% id in 48 aa, and to entire Chlorobium tepidum preprotein translocase SecE subunit or CT0149 SWALL:Q8KG21 (EMBL:AE012794) (63 aa) fasta scores: E(): 0.0017, 34.92% id in 63 aa; putative preprotein translocase SecE subunit 4725361 secE 3287222 secE Bacteroides fragilis NCTC 9343 putative preprotein translocase SecE subunit YP_213600.1 4725170 R 272559 CDS YP_213601.1 60683457 3285511 complement(4725502..4726686) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis elongation factor Tu Tuf SWALL:EFTU_BACFR (SWALL:P33165) (394 aa) fasta scores: E(): 4.7e-145, 100% id in 394 aa, and to Bacteroides thetaiotaomicron elongation factor Tu BT2740 SWALL:Q8A463 (EMBL:AE016937) (394 aa) fasta scores: E(): 3.1e-142, 96.95% id in 394 aa; Elongation factor Tu 4726686 tuf 3285511 tuf Bacteroides fragilis NCTC 9343 Elongation factor Tu YP_213601.1 4725502 R 272559 CDS YP_213602.1 60683458 3287673 complement(4727252..4727551) 1 NC_003228.3 Limited similarity to Azotobacter vinelandii probable sigma(54) modulation protein SWALL:RP5M_AZOVI (SWALL:P17160) (107 aa) fasta scores: E(): 0.0012, 31.25% id in 96 aa, and to Bacteroides thetaiotaomicron sigma-54 modulation protein BT2741 SWALL:Q8A462 (EMBL:AE016937) (99 aa) fasta scores: E(): 1.6e-28, 87.87% id in 99 aa; putative sigma(54) modulation protein 4727551 3287673 BF9343_3918 Bacteroides fragilis NCTC 9343 putative sigma(54) modulation protein YP_213602.1 4727252 R 272559 CDS YP_213603.1 60683459 3287703 complement(4727566..4728447) 1 NC_003228.3 Similar to Staphylococcus aureus tyrosine recombinase XerC or sav1252 or sa1095 SWALL:XERC_STAAM (SWALL:Q99UL9) (298 aa) fasta scores: E(): 8.7e-33, 35.61% id in 292 aa, and to Bacteroides thetaiotaomicron integrase, site-specific recombinase BT2742 SWALL:Q8A461 (EMBL:AE016937) (293 aa) fasta scores: E(): 2.2e-98, 89.07% id in 293 aa, and to Porphyromonas gingivalis W83 site-specific recombinase, phage integrase family/ribosomal subunit interface protein PG0386 SWALL:AAQ65592 (EMBL:AE017173) (400 aa) fasta scores: E(): 1.6e-46, 46.39% id in 291 aa; putative site-specific recombinase 4728447 3287703 BF9343_3919 Bacteroides fragilis NCTC 9343 putative site-specific recombinase YP_213603.1 4727566 R 272559 CDS YP_213604.1 60683460 3287717 complement(4728521..4728712) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 ribosomal protein S21 RpsU or PG0385 SWALL:AAQ65591 (EMBL:AE017173) (63 aa) fasta scores: E(): 2.7e-13, 71.42% id in 63 aa, and to Chlorobium tepidum 30S ribosomal protein S21 RpsU or CT1919 SWALL:RS21_CHLTE (SWALL:Q8KB70) (65 aa) fasta scores: E(): 6.1e-06, 50% id in 52 aa; putative ribosomal protein S21 4728712 3287717 BF9343_3920 Bacteroides fragilis NCTC 9343 putative ribosomal protein S21 YP_213604.1 4728521 R 272559 CDS YP_213605.1 60683461 3287726 4728886..4730664 1 NC_003228.3 Similar to Sus scrofa Xaa-Pro aminopeptidase 2 precursor Xpnpep2 SWALL:XPP2_PIG (SWALL:Q95333) (673 aa) fasta scores: E(): 6.6e-61, 37.1% id in 601 aa, and to Bacteroides thetaiotaomicron putative aminopeptidase BT2743 SWALL:Q8A460 (EMBL:AE016937) (593 aa) fasta scores: E(): 6.9e-187, 76.56% id in 593 aa; putative peptidase 4730664 3287726 BF9343_3921 Bacteroides fragilis NCTC 9343 putative peptidase YP_213605.1 4728886 D 272559 CDS YP_213606.1 60683462 3287657 4730759..4731271 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron acetyltransferase BT2744 SWALL:Q8A459 (EMBL:AE016937) (170 aa) fasta scores: E(): 5.4e-58, 91.76% id in 170 aa, and to Porphyromonas gingivalis W83 hexapeptide transferase family protein PG1211 SWALL:AAQ66301 (EMBL:AE017176) (192 aa) fasta scores: E(): 2.6e-46, 72.94% id in 170 aa; putative hexapeptide repeat protein 4731271 3287657 BF9343_3922 Bacteroides fragilis NCTC 9343 putative hexapeptide repeat protein YP_213606.1 4730759 D 272559 CDS YP_213607.1 60683463 3287883 complement(4731460..4732680) 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 3-deoxy-D-manno-octulosonic-acid transferase KdtA or WaaA or B3633 or C4457 or Z5057 or ECS4508 SWALL:KDTA_ECOLI (SWALL:P23282) (425 aa) fasta scores: E(): 6.1e-20, 28.72% id in 369 aa, and to Bacteroides thetaiotaomicron 3-deoxy-D-manno-octulosonic-acid transferase BT2747 SWALL:Q8A456 (EMBL:AE016937) (407 aa) fasta scores: E(): 2.1e-147, 87.46% id in 407 aa; 3-deoxy-D-manno-octulosonic-acid transferase 4732680 kdtA 3287883 kdtA Bacteroides fragilis NCTC 9343 3-deoxy-D-manno-octulosonic-acid transferase YP_213607.1 4731460 R 272559 CDS YP_213608.1 60683464 3286809 complement(4732693..4734210) 1 NC_003228.3 Similar to Bacillus stearothermophilus glutamyl-tRNA synthetase GltX SWALL:SYE_BACST (SWALL:P22249) (489 aa) fasta scores: E(): 7.3e-46, 40.07% id in 514 aa, and to Bacteroides thetaiotaomicron glutamyl-tRNA synthetase BT2748 SWALL:Q8A455 (EMBL:AE016937) (504 aa) fasta scores: E(): 2.7e-199, 94.05% id in 505 aa; putative glutamyl-tRNA synthetase 4734210 gltX 3286809 gltX Bacteroides fragilis NCTC 9343 putative glutamyl-tRNA synthetase YP_213608.1 4732693 R 272559 CDS YP_213609.1 60683465 3287682 4734305..4736362 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative membrane-associated HD superfamily hydrolase BT2749 SWALL:Q8A454 (EMBL:AE016937) (690 aa) fasta scores: E(): 0, 84.49% id in 690 aa; putative transmembrane HD family protein 4736362 3287682 BF9343_3925 Bacteroides fragilis NCTC 9343 putative transmembrane HD family protein YP_213609.1 4734305 D 272559 CDS YP_213610.1 60683466 3287681 complement(4736337..4736810) 1 NC_003228.3 Similar to Streptomyces coelicolor low molecular weight protein-tyrosine-phosphatase PtpA or sco3921 or scq11.04C SWALL:PTPA_STRCO (SWALL:P53433) (164 aa) fasta scores: E(): 2.7e-16, 36.94% id in 157 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2750 SWALL:Q8A453 (EMBL:AE016937) (156 aa) fasta scores: E(): 2.8e-61, 95.48% id in 155 aa; putative low molecular weight protein-tyrosine-phosphatase 4736810 3287681 BF9343_3926 Bacteroides fragilis NCTC 9343 putative low molecular weight protein-tyrosine-phosphatase YP_213610.1 4736337 R 272559 CDS YP_213611.1 60683467 3287713 complement(4736925..4738724) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2751 SWALL:Q8A452 (EMBL:AE016937) (598 aa) fasta scores: E(): 5.2e-191, 71.78% id in 599 aa; hypothetical protein 4738724 3287713 BF9343_3927 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213611.1 4736925 R 272559 CDS YP_213612.1 60683468 3287715 complement(4738766..4741225) 1 NC_003228.3 Similar to Bacillus subtilis primosomal protein N' PriA or BSU15710 SWALL:PRIA_BACSU (SWALL:P94461) (805 aa) fasta scores: E(): 6.2e-81, 34.83% id in 821 aa, and to Bacteroides thetaiotaomicron primosomal protein N' BT2752 SWALL:Q8A451 (EMBL:AE016937) (818 aa) fasta scores: E(): 0, 85.47% id in 819 aa; putative primosomal protein N' 4741225 3287715 BF9343_3928 Bacteroides fragilis NCTC 9343 putative primosomal protein N' YP_213612.1 4738766 R 272559 CDS YP_213613.1 60683469 3287699 complement(4741300..4741878) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2753 SWALL:Q8A450 (EMBL:AE016937) (196 aa) fasta scores: E(): 1.1e-48, 69.69% id in 198 aa; putative transmembrane protein 4741878 3287699 BF9343_3929 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213613.1 4741300 R 272559 CDS YP_213614.1 60683470 3287697 complement(4742536..4743729) 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:Q8AA04 (EMBL:AE016928) (408 aa) fasta scores: E(): 0.0025, 22.85% id in 407 aa; hypothetical protein 4743729 3287697 BF9343_3930 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213614.1 4742536 R 272559 CDS YP_213615.1 60683471 3289123 complement(4743843..4745276) 1 NC_003228.3 Similar to Pseudomonas fluorescens Aspartate ammonia-lyase AspA SWALL:ASPA_PSEFL (SWALL:P07346) (478 aa) fasta scores: E(): 7e-96, 56.43% id in 466 aa, and to Bacteroides thetaiotaomicron aspartate ammonia-lyase BT2755 SWALL:Q8A448 (EMBL:AE016937) (486 aa) fasta scores: E(): 1.5e-171, 91.61% id in 477 aa; putative aspartate ammonia-lyase 4745276 aspA 3289123 aspA Bacteroides fragilis NCTC 9343 putative aspartate ammonia-lyase YP_213615.1 4743843 R 272559 CDS YP_213616.1 60683472 3287639 4745572..4746906 1 NC_003228.3 Similar to Haemophilus influenzae anaerobic C4-dicarboxylate transporter DcuB or hi0746 SWALL:DCUB_HAEIN (SWALL:P44855) (440 aa) fasta scores: E(): 4.2e-87, 56.25% id in 432 aa, and to Bacteroides thetaiotaomicron anaerobic C4-dicarboxylate transporter DcuB BT2756 SWALL:Q8A447 (EMBL:AE016937) (436 aa) fasta scores: E(): 1.5e-147, 93.57% id in 436 aa; putative transmembrane anaerobic C4-dicarboxylate transporter 4746906 3287639 BF9343_3932 Bacteroides fragilis NCTC 9343 putative transmembrane anaerobic C4-dicarboxylate transporter YP_213616.1 4745572 D 272559 CDS YP_213617.1 60683473 3289071 4746952..4748010 1 NC_003228.3 Similar to Escherichia coli L-asparaginase II precursor AnsB or B2957 SWALL:ASG2_ECOLI (SWALL:P00805) (348 aa) fasta scores: E(): 2.4e-69, 59.42% id in 350 aa, and to Bacteroides thetaiotaomicron L-asparaginase II precursor BT2757 SWALL:Q8A446 (EMBL:AE016937) (352 aa) fasta scores: E(): 3.6e-107, 84.65% id in 352 aa; putative L-asparaginase II precursor 4748010 ansB 3289071 ansB Bacteroides fragilis NCTC 9343 putative L-asparaginase II precursor YP_213617.1 4746952 D 272559 CDS YP_213618.1 60683474 3287640 4748043..4749230 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2758 SWALL:Q8A445 (EMBL:AE016937) (389 aa) fasta scores: E(): 1.9e-128, 80% id in 395 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0326 SWALL:AAQ65540 (EMBL:AE017173) (411 aa) fasta scores: E(): 8.2e-46, 37.46% id in 395 aa; hypothetical protein 4749230 3287640 BF9343_3934 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213618.1 4748043 D 272559 CDS YP_213619.1 60683475 3287643 complement(4749746..4750744) 1 NC_003228.3 Similar to Acinetobacter sp. SE19 pilin inverting protein ChnY SWALL:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): 6.8e-12, 23.78% id in 328 aa, and to Bacteroides thetaiotaomicron transposase BT0485 or BT1603 or BT1756 or BT3068 or BT3795 or BT4740 SWALL:Q877S8 (EMBL:AE016927) (331 aa) fasta scores: E(): 5.6e-29, 36.5% id in 326 aa; putative transposase 4750744 3287643 BF9343_3935 Bacteroides fragilis NCTC 9343 putative transposase YP_213619.1 4749746 R 272559 CDS YP_213620.1 60683476 3287648 4751360..4751854 1 NC_003228.3 no significant database matches; hypothetical protein 4751854 3287648 BF9343_3936 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213620.1 4751360 D 272559 CDS YP_213621.1 60683477 3287655 complement(4755430..4759353) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT1635 SWALL:Q8A790 (EMBL:AE016932) (1321 aa) fasta scores: E(): 1.9e-176, 37.47% id in 1297 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT4137 SWALL:Q8A084 (EMBL:AE016943) (1310 aa) fasta scores: E(): 4.6e-175, 37% id in 1327 aa; putative two-component system sensor histidine kinase/response regulator fusion protein 4759353 3287655 BF9343_3941 Bacteroides fragilis NCTC 9343 putative two-component system sensor histidine kinase/response regulator fusion protein YP_213621.1 4755430 R 272559 CDS YP_213622.1 60683478 3287834 complement(4759556..4760347) 1 NC_003228.3 Almost identical to previously sequenced Bacteroides fragilis TnpB SWALL:AAQ84471 (EMBL:AY372755) (280 aa) fasta scores: E(): 1.4e-95, 98.47% id in 262 aa, and highly similar to previously sequenced Bacteroides fragilis insertion sequence IS21-like putative ATP-binding protein TnpB (BF1535) SWALL:ISTB_BACFR (SWALL:Q45120) (263 aa) fasta scores: E(): 1.1e-67, 72.24% id in 263 aa; putative IstB/TnpB insertion sequence IS21-like protein 4760347 tnpB 3287834 tnpB Bacteroides fragilis NCTC 9343 putative IstB/TnpB insertion sequence IS21-like protein YP_213622.1 4759556 R 272559 CDS YP_213623.1 60683479 3289149 4762106..4763740 1 NC_003228.3 Highly similar to Bacteroides fragilis neuraminidase precursor NanH SWALL:Q45145 (EMBL:D28493) (544 aa) fasta scores: E(): 2.5e-173, 78.08% id in 543 aa, and to Clostridium sordellii sialidase precursor SWALL:NANH_CLOSO (SWALL:P15698) (404 aa) fasta scores: E(): 1.2e-22, 28.92% id in 401 aa. Note: Also similar to BF1806 NanH (545 aa) fasta scores: E(): 3.6e-174, 78.269% identity in 543 aa overlap; putative neuraminidase precursor 4763740 nanH2 3289149 nanH2 Bacteroides fragilis NCTC 9343 putative neuraminidase precursor YP_213623.1 4762106 D 272559 CDS YP_213624.1 60683480 3287672 4763923..4765554 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transposase BT1980 SWALL:Q8A6A5 (EMBL:AE016934) (553 aa) fasta scores: E(): 1.8e-100, 52.32% id in 516 aa, and to Microscilla sp. PRE1 ms156, putative transposase SWALL:Q93P75 (EMBL:AF339846) (510 aa) fasta scores: E(): 1.5e-87, 47.14% id in 507 aa; putative transposase 4765554 3287672 BF9343_3945 Bacteroides fragilis NCTC 9343 putative transposase YP_213624.1 4763923 D 272559 CDS YP_213625.1 60683481 3287666 4765592..4766353 1 NC_003228.3 Similar to Rhodopirellula baltica N-acylglucosamine 2-epimerase RB3348 SWALL:Q7UUE2 (EMBL:BX294138) (391 aa) fasta scores: E(): 2.1e-45, 48.18% id in 220 aa, and to Synechocystis sp. renin-binding protein SLR1975 SWALL:P74124 (EMBL:D90912) (391 aa) fasta scores: E(): 8.5e-29, 34.97% id in 243 aa; hypothetical protein 4766353 3287666 BF9343_3946 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213625.1 4765592 D 272559 CDS YP_213626.1 60683482 3287661 4766363..4767601 1 NC_003228.3 Similar to Bacillus subtilis hexuronate transporter ExuT or BSU12360 SWALL:EXUT_BACSU (SWALL:O34456) (422 aa) fasta scores: E(): 3.4e-16, 25.78% id in 415 aa, and to Caulobacter crescentus major facilitator family transporter CC0336 SWALL:Q9AB95 (EMBL:AE005706) (438 aa) fasta scores: E(): 1.7e-18, 25.13% id in 378 aa; putative transmembrane sugar transporter 4767601 3287661 BF9343_3947 Bacteroides fragilis NCTC 9343 putative transmembrane sugar transporter YP_213626.1 4766363 D 272559 CDS YP_213627.1 60683483 3287683 4767698..4768837 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical protein SWALL:BAC56901 (EMBL:AB102772) (404 aa) fasta scores: E(): 2.3e-48, 43.93% id in 396 aa, and to Clostridium perfringens hypothetical protein CPE0726 SWALL:Q8XMG3 (EMBL:AP003187) (384 aa) fasta scores: E(): 2.4e-25, 28.38% id in 384 aa; hypothetical protein 4768837 3287683 BF9343_3948 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213627.1 4767698 D 272559 CDS YP_213628.1 60683484 3287678 4769105..4772350 1 NC_003228.3 Similar to Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 4.5e-54, 28.4% id in 1123 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0190 SWALL:AAO75297 (EMBL:AE016926) (1146 aa) fasta scores: E(): 1.8e-57, 28.95% id in 1119 aa; putative outer membrane protein 4772350 3287678 BF9343_3949 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213628.1 4769105 D 272559 CDS YP_213629.1 60683485 3287671 4772365..4773981 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3102 SWALL:AAO78208 (EMBL:AE016939) (566 aa) fasta scores: E(): 3.7e-07, 25.69% id in 580 aa; putative outer membrane protein 4773981 3287671 BF9343_3950 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213629.1 4772365 D 272559 CDS YP_213630.1 60683486 3287685 4774069..4774902 1 NC_003228.3 Similar to Flavobacterium keratolyticus endo-beta-galactosidase SWALL:Q9ZG90 (EMBL:AF083896) (422 aa) fasta scores: E(): 7.4e-35, 45.14% id in 237 aa, and to Bacteroides thetaiotaomicron beta-glucanase precursor BT2824 SWALL:AAO77930 (EMBL:AE016937) (372 aa) fasta scores: E(): 2.3e-24, 39.11% id in 271 aa; putative endo-beta-galactosidase 4774902 3287685 BF9343_3951 Bacteroides fragilis NCTC 9343 putative endo-beta-galactosidase YP_213630.1 4774069 D 272559 CDS YP_213631.1 60683487 3287688 4775156..4777519 1 NC_003228.3 Similar to Porphyromonas gingivalis beta-hexosaminidase precursor NahA or PG0043 SWALL:HEXA_PORGI (SWALL:P49008) (777 aa) fasta scores: E(): 3.1e-134, 47.03% id in 776 aa, and to Bacteroides forsythus HexA SWALL:AAO33832 (EMBL:AY184490) (782 aa) fasta scores: E(): 9.2e-174, 56.58% id in 790 aa; putative beta-hexosaminidase precursor 4777519 3287688 BF9343_3952 Bacteroides fragilis NCTC 9343 putative beta-hexosaminidase precursor YP_213631.1 4775156 D 272559 CDS YP_213632.1 60683488 3287696 4777550..4778410 1 NC_003228.3 Similar to Rhodothermus marinus beta-glucanase precursor BglA SWALL:GUB_RHOMR (SWALL:P45798) (286 aa) fasta scores: E(): 1.6e-13, 29.89% id in 291 aa, and to Bacteroides thetaiotaomicron beta-glucanase precursor BT2824 SWALL:AAO77930 (EMBL:AE016937) (372 aa) fasta scores: E(): 1.8e-25, 37.83% id in 259 aa, and to Rhodothermus marinus laminarinase LamR SWALL:O52754 (EMBL:AF047003) (276 aa) fasta scores: E(): 7.6e-14, 31.76% id in 255 aa; putative beta-glucanase 4778410 3287696 BF9343_3953 Bacteroides fragilis NCTC 9343 putative beta-glucanase YP_213632.1 4777550 D 272559 CDS YP_213633.1 60683489 3287691 4779554..4781428 1 NC_003228.3 Similar to Homo sapiens beta-galactosidase precursor Glb1 SWALL:BGAL_HUMAN (SWALL:P16278) (677 aa) fasta scores: E(): 2.5e-70, 36.63% id in 636 aa, and to Mus musculus galactosidase, beta 1 Glb1 SWALL:Q8K131 (EMBL:BC028875) (647 aa) fasta scores: E(): 2.8e-70, 36.76% id in 631 aa, and to Felis silvestris catus beta-galactosidase precursor Glb1 or Bgal SWALL:BGAL_FELCA (SWALL:O19015) (669 aa) fasta scores: E(): 7.8e-70, 37.06% id in 634 aa; putative beta-galactosidase 4781428 3287691 BF9343_3954 Bacteroides fragilis NCTC 9343 putative beta-galactosidase YP_213633.1 4779554 D 272559 CDS YP_213634.1 60683490 3287698 4781654..4784650 1 NC_003228.3 Similar to Bacteroides CACcae TonB-linked outer membrane protein OmpW SWALL:Q93FV1 (EMBL:AF305878) (947 aa) fasta scores: E(): 9.2e-33, 30.8% id in 987 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3090 SWALL:Q8A365 (EMBL:AE016938) (999 aa) fasta scores: E(): 1.6e-84, 34.45% id in 1010 aa; putative TonB-linked outer membrane protein 4784650 3287698 BF9343_3955 Bacteroides fragilis NCTC 9343 putative TonB-linked outer membrane protein YP_213634.1 4781654 D 272559 CDS YP_213635.1 60683491 3287700 4784697..4786274 1 NC_003228.3 Similar to Microscilla sp. PRE1 Ms107 outer membrane protein SWALL:Q93PC2 (EMBL:AF339846) (572 aa) fasta scores: E(): 3.8e-06, 22.24% id in 598 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1682 SWALL:Q8A743 (EMBL:AE016932) (651 aa) fasta scores: E(): 1.7e-11, 26% id in 350 aa; putative outer membrane protein 4786274 3287700 BF9343_3956 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213635.1 4784697 D 272559 CDS YP_213636.1 60683492 3286480 4787058..4788425 1 NC_003228.3 Codons 90-400 are similar to codons 300- C terminus of Bacteroides thetaiotaomicron hypothetical protein BT3741 SWALL:AAO78846 (EMBL:AE016942) (602 aa) fasta scores: E(): 1.9e-09, 23.58% id in 318 aa; hypothetical protein 4788425 3286480 BF9343_3957 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213636.1 4787058 D 272559 CDS YP_213637.1 60683493 3287707 4788422..4789477 1 NC_003228.3 no significant database matches; hypothetical protein 4789477 3287707 BF9343_3958 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213637.1 4788422 D 272559 CDS YP_213638.1 60683494 3286734 4792151..4792522 1 NC_003228.3 N-terminus is similar to the N-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT4026 SWALL:AAO79131 (EMBL:AE016943) (332 aa) fasta scores: E(): 4.6e-10, 39.17% id in 97 aa; Similar to previously sequenced Bacteroides fragilis ORF-59 SWALL:AAQ92934 (EMBL:AY375536) (165 aa) fasta scores: E(): 2.3e-12, 44.44% id in 99 aa, and to N-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT4026 SWALL:Q8A0J5 (EMBL:AE016943) (332 aa) fasta scores: E(): 6.6e-10, 39.17% id in 97 aa; Similar to previously sequenced Bacteroides fragilis ORF-59 SWALL:AAQ92934 (EMBL:AY375536) (165 aa) fasta scores: E(): 2.3e-12, 44.44% id in 99 aa; hypothetical protein 4792522 3286734 BF9343_3962 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213638.1 4792151 D 272559 CDS YP_213639.1 60683495 3287721 4792542..4792757 1 NC_003228.3 no significant database matches; hypothetical protein 4792757 3287721 BF9343_3963 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213639.1 4792542 D 272559 CDS YP_213640.1 60683496 3287724 complement(4792853..4793608) 1 NC_003228.3 Similar to Mycobacterium bovis IstB transposase helper protein SWALL:Q9RLQ8 (EMBL:AJ238712) (266 aa) fasta scores: E(): 1.5e-22, 37.39% id in 230 aa, and to the C-terminus of Frankia sp. Ar15 TPase2 SWALL:Q8RL44 (EMBL:AY008259) (435 aa) fasta scores: E(): 1.9e-24, 35.8% id in 229 aa; putative IstB IS21 family transposase protein 4793608 3287724 BF9343_3964 Bacteroides fragilis NCTC 9343 putative IstB IS21 family transposase protein YP_213640.1 4792853 R 272559 CDS YP_213641.1 60683497 3287634 complement(4795316..4795576) 1 NC_003228.3 no significant database matches; hypothetical protein 4795576 3287634 BF9343_3966 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213641.1 4795316 R 272559 CDS YP_213642.1 60683498 3287677 complement(4795579..4796898) 1 NC_003228.3 Similar to Bifidobacterium longum narrowly conserved hypothetical protein bl0495 SWALL:Q8G6Y5 (EMBL:AE014670) (427 aa) fasta scores: E(): 1.1e-74, 50.35% id in 421 aa, and to Bifidobacterium longum hypothetical protein with similarity to mycoplasma fermentans ORFE1 of insertion sequence IS1630EM BL1256 SWALL:Q8G4W8 (EMBL:AE014752) (436 aa) fasta scores: E(): 1.4e-59, 43.89% id in 426 aa; hypothetical protein 4796898 3287677 BF9343_3967 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213642.1 4795579 R 272559 CDS YP_213643.1 60683499 3287709 complement(4796985..4798502) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0228 SWALL:AAO75335 (EMBL:AE016926) (677 aa) fasta scores: E(): 8.5e-21, 30.65% id in 460 aa; possible recombination enzyme 4798502 3287709 BF9343_3968 Bacteroides fragilis NCTC 9343 possible recombination enzyme YP_213643.1 4796985 R 272559 CDS YP_213644.1 60683500 3287722 complement(4798677..4799705) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis hypothetical protein SWALL:Q9XBG9 (EMBL:U75371) (371 aa) fasta scores: E(): 6.6e-44, 43.4% id in 364 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0229 SWALL:AAO75336 (EMBL:AE016926) (341 aa) fasta scores: E(): 4.1e-77, 55.2% id in 346 aa; hypothetical protein 4799705 3287722 BF9343_3969 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213644.1 4798677 R 272559 CDS YP_213645.1 60683501 3287728 complement(4799698..4801170) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0230 SWALL:Q8AB80 (EMBL:AE016926) (452 aa) fasta scores: E(): 5.6e-60, 38.21% id in 458 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0871 SWALL:AAQ66018 (EMBL:AE017175) (458 aa) fasta scores: E(): 1.1e-37, 29.18% id in 442 aa; hypothetical protein 4801170 3287728 BF9343_3970 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213645.1 4799698 R 272559 CDS YP_213646.1 60683502 3287342 complement(4801190..4801522) 1 NC_003228.3 no significant database matches; hypothetical protein 4801522 3287342 BF9343_3971 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213646.1 4801190 R 272559 CDS YP_213647.1 60683503 3287390 complement(4801755..4802423) 1 NC_003228.3 no significant database matches; putative transmembrane protein 4802423 3287390 BF9343_3972 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213647.1 4801755 R 272559 CDS YP_213648.1 60683504 3287369 complement(4802485..4803843) 1 NC_003228.3 C-terminus is similar to Bergeyella zoohelcum Integrase Int SWALL:Q56754 (EMBL:U14952) (259 aa) fasta scores: E(): 2.2e-06, 27.51% id in 189 aa; putative bacteriophage integrase 4803843 3287369 BF9343_3973 Bacteroides fragilis NCTC 9343 putative bacteriophage integrase YP_213648.1 4802485 R 272559 CDS YP_213649.1 60683505 3287395 complement(4804044..4804265) 1 NC_003228.3 Identical to Bacteroides thetaiotaomicron conserved hypothetical protein BT2759 SWALL:Q8A444 (EMBL:AE016937) (73 aa) fasta scores: E(): 7.9e-28, 100% id in 73 aa; hypothetical protein 4804265 3287395 BF9343_3974 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213649.1 4804044 R 272559 CDS YP_213650.1 60683506 3287364 complement(4804336..4804899) 1 NC_003228.3 Similar to Lactobacillus collinoides PduO protein SWALL:Q845A9 (EMBL:AJ297723) (192 aa) fasta scores: E(): 3.8e-21, 41.81% id in 165 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2760 SWALL:Q8A443 (EMBL:AE016937) (187 aa) fasta scores: E(): 5.4e-54, 75.4% id in 187 aa; putative vitamin B12 related Cobalamin adenosyltransferase 4804899 3287364 BF9343_3975 Bacteroides fragilis NCTC 9343 putative vitamin B12 related Cobalamin adenosyltransferase YP_213650.1 4804336 R 272559 CDS YP_213651.1 60683507 3287346 complement(4804948..4805610) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2761 SWALL:AAO77867 (EMBL:AE016937) (212 aa) fasta scores: E(): 8e-52, 61.61% id in 211 aa; hypothetical protein 4805610 3287346 BF9343_3976 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213651.1 4804948 R 272559 CDS YP_213652.1 60683508 3287331 4805779..4806639 1 NC_003228.3 no significant database matches; hypothetical protein 4806639 3287331 BF9343_3977 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213652.1 4805779 D 272559 CDS YP_213653.1 60683509 3287337 complement(4806838..4807413) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1925 SWALL:AAO77032 (EMBL:AE016934) (131 aa) fasta scores: E(): 6.7e-07, 34.14% id in 123 aa; hypothetical protein 4807413 3287337 BF9343_3978 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213653.1 4806838 R 272559 CDS YP_213654.1 60683510 3287706 complement(4807504..4808478) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1926 SWALL:Q8A6F8 (EMBL:AE016934) (288 aa) fasta scores: E(): 3e-44, 52.92% id in 325 aa; hypothetical protein 4808478 3287706 BF9343_3979 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213654.1 4807504 R 272559 CDS YP_213655.1 60683511 3287695 complement(4808503..4810926) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1927 SWALL:Q8A6F7 (EMBL:AE016934) (928 aa) fasta scores: E(): 7.7e-05, 21.35% id in 843 aa; hypothetical protein 4810926 3287695 BF9343_3980 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213655.1 4808503 R 272559 CDS YP_213656.1 60683512 3285762 complement(4811372..4812304) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron integrase BT2488 SWALL:Q8A4V9 (EMBL:AE016936) (315 aa) fasta scores: E(): 3.2e-67, 56.53% id in 306 aa, and to Bacteroides thetaiotaomicron integrase protein BT1793 SWALL:Q8A6T3 (EMBL:AE016933) (315 aa) fasta scores: E(): 2.5e-66, 56.86% id in 306 aa; tyrosine site-specific recombinase 4812304 tsr26 3285762 tsr26 Bacteroides fragilis NCTC 9343 tyrosine site-specific recombinase YP_213656.1 4811372 R 272559 CDS YP_213657.1 60683513 3287694 4812480..4814618 1 NC_003228.3 no significant database matches; hypothetical protein 4814618 3287694 BF9343_3982 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213657.1 4812480 D 272559 CDS YP_213658.1 60683514 3287730 complement(4814837..4815508) 1 NC_003228.3 C-terminus is similar to the C-terminus of Bacteroides thetaiotaomicron putative helicase BT2775 SWALL:Q8A429 (EMBL:AE016937) (702 aa) fasta scores: E(): 1.4e-25, 48.1% id in 158 aa, and C-terminus is similar to the C-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT4162 SWALL:Q8A059 (EMBL:AE016944) (692 aa) fasta scores: E(): 1.9e-25, 46.2% id in 158 aa; hypothetical protein 4815508 3287730 BF9343_3983 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213658.1 4814837 R 272559 CDS YP_213659.1 60683515 3287693 complement(4816005..4818539) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis sialate O-acetylesterase EstS SWALL:Q84IE0 (EMBL:AB102772) (690 aa) fasta scores: E(): 1.5e-24, 40.26% id in 226 aa, and N-terminus is similar to C-terminus of Bacteroides thetaiotaomicron putative xylanase BT1192 SWALL:Q8A8H5 (EMBL:AE016930) (463 aa) fasta scores: E(): 1.3e-41, 54.46% id in 213 aa; putative O-antigen related protein 4818539 3287693 BF9343_3984 Bacteroides fragilis NCTC 9343 putative O-antigen related protein YP_213659.1 4816005 R 272559 CDS YP_213660.1 60683516 3287692 complement(4818797..4819960) 1 NC_003228.3 Similar to Synechocystis sp. hypothetical protein SLL1681 SWALL:P72778 (EMBL:D90900) (507 aa) fasta scores: E(): 4.7e-13, 28.51% id in 263 aa; hypothetical protein 4819960 3287692 BF9343_3985 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213660.1 4818797 R 272559 CDS YP_213661.1 60683517 3287674 complement(4819985..4820857) 1 NC_003228.3 no significant database matches; hypothetical protein 4820857 3287674 BF9343_3986 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213661.1 4819985 R 272559 CDS YP_213662.1 60683518 3287733 complement(4820870..4823023) 1 NC_003228.3 Codons 135-460 are similar to codons 110-433 of Bacteroides forsythus surface antigen BspA SWALL:O68831 (EMBL:AF054892) (1081 aa) fasta scores: E(): 1.6e-36, 35.38% id in 325 aa; possible bacterial surface protein 4823023 3287733 BF9343_3987 Bacteroides fragilis NCTC 9343 possible bacterial surface protein YP_213662.1 4820870 R 272559 CDS YP_213663.1 60683519 3287732 complement(4823029..4825656) 1 NC_003228.3 Limited similarity to Escherichia coli O157:H7 hypothetical protein YeeJ Z3135 or ECS2775/ECS2776 SWALL:YEEJ_ECO57 (SWALL:Q8X8V7) (2660 aa) fasta scores: E(): 0.001, 20.32% id in 748 aa; hypothetical protein 4825656 3287732 BF9343_3988 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213663.1 4823029 R 272559 CDS YP_213664.1 60683520 3287637 complement(4825681..4826661) 1 NC_003228.3 no significant database matches; hypothetical protein 4826661 3287637 BF9343_3989 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213664.1 4825681 R 272559 CDS YP_213665.1 60683521 3287636 complement(4826694..4827707) 1 NC_003228.3 no significant database matches; hypothetical protein 4827707 3287636 BF9343_3990 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213665.1 4826694 R 272559 CDS YP_213666.1 60683522 3287638 complement(4827724..4828932) 1 NC_003228.3 no significant database matches; hypothetical protein 4828932 3287638 BF9343_3991 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213666.1 4827724 R 272559 CDS YP_213667.1 60683523 3287734 4829609..4830166 1 NC_003228.3 Similar to Bacillus subtilis ADP-ribose pyrophosphatase NudF or BSU23610 SWALL:ADPP_BACSU (SWALL:P54570) (185 aa) fasta scores: E(): 3.2e-09, 27.77% id in 162 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1833 SWALL:Q8A6P4 (EMBL:AE016933) (882 aa) fasta scores: E(): 1.1e-65, 85.16% id in 182 aa, and to Chlorobium tepidum NUDIX/MutT family protein, putative CT1365 SWALL:Q8KCP8 (EMBL:AE012895) (195 aa) fasta scores: E(): 6.5e-31, 48.86% id in 176 aa; putative NUDIX/MutT-family protein 4830166 3287734 BF9343_3992 Bacteroides fragilis NCTC 9343 putative NUDIX/MutT-family protein YP_213667.1 4829609 D 272559 CDS YP_213668.1 60683524 3287736 complement(4830311..4830529) 1 NC_003228.3 no significant database matches; hypothetical protein 4830529 3287736 BF9343_3993 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213668.1 4830311 R 272559 CDS YP_213669.1 60683525 3287735 complement(4830540..4830761) 1 NC_003228.3 no significant database matches; hypothetical protein 4830761 3287735 BF9343_3994 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213669.1 4830540 R 272559 CDS YP_213670.1 60683526 3287731 4830901..4831461 1 NC_003228.3 Similar to C-terminus of Vibrio vulnificus YJ016 putative regulator of cell autolysis VV0692 SWALL:BAC93456 (EMBL:AP005332) (560 aa) fasta scores: E(): 1.6e-10, 31.89% id in 185 aa, and to C-terminus of Bacteroides thetaiotaomicron putative two-component system sensor protein histidine kinase BT3967 SWALL:Q8A0Q4 (EMBL:AE016943) (352 aa) fasta scores: E(): 1.3e-20, 37.63% id in 186 aa; putative two-component sensor histidine kinase transcriptional regulator 4831461 3287731 BF9343_3995 Bacteroides fragilis NCTC 9343 putative two-component sensor histidine kinase transcriptional regulator YP_213670.1 4830901 D 272559 CDS YP_213671.1 60683527 3287727 4831461..4832225 1 NC_003228.3 Similar to Staphylococcus aureus LytS and LytR genes, complete CDS LytR or SAV0261 or SA0251 SWALL:P96456 (EMBL:L42945) (246 aa) fasta scores: E(): 1.1e-11, 27.93% id in 247 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT1076 SWALL:Q8A8U1 (EMBL:AE016930) (259 aa) fasta scores: E(): 1.4e-27, 34.74% id in 259 aa; putative two-component response regulator autolysis regulator LytR 4832225 3287727 BF9343_3996 Bacteroides fragilis NCTC 9343 putative two-component response regulator autolysis regulator LytR YP_213671.1 4831461 D 272559 CDS YP_213672.1 60683528 3287725 4832249..4833754 1 NC_003228.3 C-terminus is similar to the N-terminus of Escherichia coli, Escherichia coli O6, and Shigella flexneri ferredoxin-type protein NapG or B2205 or C2744 or SF2289 or s2419 SWALL:NAPG_ECOLI (SWALL:P33936) (231 aa) fasta scores: E(): 7.7e-10, 30.22% id in 182 aa, and entire protein is similar to Bacteroides thetaiotaomicron putative ferredoxin-type protein BT0963 SWALL:Q8A954 (EMBL:AE016929) (502 aa) fasta scores: E(): 1e-140, 69.32% id in 502 aa; putative transmembrane ferredoxin-like protein 4833754 3287725 BF9343_3997 Bacteroides fragilis NCTC 9343 putative transmembrane ferredoxin-like protein YP_213672.1 4832249 D 272559 CDS YP_213673.1 60683529 3287719 4833777..4835159 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron aldo/keto reductase BT0962 SWALL:Q8A955 (EMBL:AE016929) (467 aa) fasta scores: E(): 1.3e-137, 71.61% id in 465 aa, and to Clostridium acetobutylicum Fe-S oxidoreductase CAC0765 SWALL:Q97L01 (EMBL:AE007592) (391 aa) fasta scores: E(): 2.8e-31, 33.33% id in 399 aa; putative aldo/keto reductase 4835159 3287719 BF9343_3998 Bacteroides fragilis NCTC 9343 putative aldo/keto reductase YP_213673.1 4833777 D 272559 CDS YP_213674.1 60683530 3287729 4835567..4837456 1 NC_003228.3 Similar to Escherichia coli vitamin B12 receptor precursor BtuB or Bfe or Cer or DcrC or B3966 SWALL:BTUB_ECOLI (SWALL:P06129) (614 aa) fasta scores: E(): 5.6e-15, 24.49% id in 641 aa, and to Bacteroides thetaiotaomicron putative TonB-dependent outer membrane receptor BT0960 SWALL:Q8A957 (EMBL:AE016929) (613 aa) fasta scores: E(): 1.3e-176, 69.87% id in 614 aa; putative TonB-dependent outer membrane receptor protein 4837456 3287729 BF9343_3999 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_213674.1 4835567 D 272559 CDS YP_213675.1 60683531 3287723 4837473..4837985 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0959 SWALL:Q8A958 (EMBL:AE016929) (169 aa) fasta scores: E(): 1.1e-48, 74.11% id in 170 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0777 SWALL:Q8A9N8 (EMBL:AE016929) (171 aa) fasta scores: E(): 2.2e-36, 63.41% id in 164 aa; putative transmembrane protein 4837985 3287723 BF9343_4000 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213675.1 4837473 D 272559 CDS YP_213676.1 60683532 3287712 complement(4838077..4838727) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2182 SWALL:Q8A5Q6 (EMBL:AE016935) (213 aa) fasta scores: E(): 2.4e-55, 63.2% id in 212 aa, and to Anabaena sp. hypothetical protein ALL7165 SWALL:Q8YKX3 (EMBL:AP003600) (183 aa) fasta scores: E(): 1.1e-24, 38.28% id in 175 aa; hypothetical protein 4838727 3287712 BF9343_4001 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213676.1 4838077 R 272559 CDS YP_213677.1 60683533 3289200 complement(4838752..4839339) 1 NC_003228.3 Similar to Lactobacillus delbrueckii thiogalactoside transacetylase LacA SWALL:Q93LI5 (EMBL:AY040211) (189 aa) fasta scores: E(): 5e-42, 58.82% id in 187 aa, and to Methanosarcina acetivorans maltose O-acetyltransferase Maa or MA0513 SWALL:Q8TTC4 (EMBL:AE010711) (199 aa) fasta scores: E(): 4.2e-53, 71.27% id in 188 aa, and to Methanosarcina mazei galactoside-O-acetyltransferase MM1673 SWALL:Q8PWB6 (EMBL:AE013403) (233 aa) fasta scores: E(): 2e-51, 68.61% id in 188 aa; putative thiogalactoside transacetylase 4839339 lacA 3289200 lacA Bacteroides fragilis NCTC 9343 putative thiogalactoside transacetylase YP_213677.1 4838752 R 272559 CDS YP_213678.1 60683534 3287718 4839348..4840184 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT2181 SWALL:Q8A5Q7 (EMBL:AE016935) (257 aa) fasta scores: E(): 6.1e-21, 35.27% id in 258 aa, and to Bacteroides thetaiotaomicron transcriptional regulator, LuxR family BT1888 SWALL:Q8A6J3 (EMBL:AE016933) (258 aa) fasta scores: E(): 1.7e-11, 31.55% id in 263 aa. Possible alternative start site at codon 28; putative transcriptional regulator GerE, LuxR family 4840184 3287718 BF9343_4003 Bacteroides fragilis NCTC 9343 putative transcriptional regulator GerE, LuxR family YP_213678.1 4839348 D 272559 CDS YP_213679.1 60683535 3287714 complement(4840241..4840759) 1 NC_003228.3 Similar to Mycobacterium tuberculosis, and Mycobacterium bovis methylated-DNA--protein-cysteine methyltransferase Ogt or Rv1316c or MT1357 or MTCY130.01c or MB1349C SWALL:OGT_MYCTU (SWALL:Q10627) (165 aa) fasta scores: E(): 1e-19, 57.14% id in 105 aa, and to Bacteroides thetaiotaomicron methylated-DNA--protein-cysteine methyltransferase BT1411 SWALL:Q8A7W3 (EMBL:AE016931) (181 aa) fasta scores: E(): 3.3e-47, 73.37% id in 169 aa; putative methylated-DNA--protein-cysteine methyltransferase 4840759 3287714 BF9343_4004 Bacteroides fragilis NCTC 9343 putative methylated-DNA--protein-cysteine methyltransferase YP_213679.1 4840241 R 272559 CDS YP_213680.1 60683536 3287705 complement(4841103..4841456) 1 NC_003228.3 Similar to Methanococcus jannaschii hypothetical protein Mj1618 SWALL:Q59013 (EMBL:U67602) (125 aa) fasta scores: E(): 0.00045, 34.48% id in 87 aa; hypothetical protein 4841456 3287705 BF9343_4005 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213680.1 4841103 R 272559 CDS YP_213681.1 60683537 3287708 4841827..4842723 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT0728 SWALL:Q8A9T7 (EMBL:AE016928) (299 aa) fasta scores: E(): 1e-63, 53.87% id in 297 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT0729 SWALL:Q8A9T6 (EMBL:AE016928) (300 aa) fasta scores: E(): 2.9e-47, 46% id in 300 aa; putative AraC-family transcriptional regulator 4842723 3287708 BF9343_4006 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_213681.1 4841827 D 272559 CDS YP_213682.1 60683538 3287711 complement(4842896..4844656) 1 NC_003228.3 Similar to Buchnera aphidicola 1-deoxy-D-xylulose 5-phosphate synthase Dxs or BUSG448 SWALL:DXS_BUCAP (SWALL:Q8K9A1) (585 aa) fasta scores: E(): 2e-52, 31.43% id in 579 aa, and to Clostridium acetobutylicum 1-deoxyxylulose-5-phosphate synthase, dehydrogenase CAP0106 SWALL:Q97TJ5 (EMBL:AE001438) (586 aa) fasta scores: E(): 8.7e-147, 64.33% id in 586 aa; putative 1-deoxy-D-xylulose 5-phosphate synthase 4844656 3287711 BF9343_4007 Bacteroides fragilis NCTC 9343 putative 1-deoxy-D-xylulose 5-phosphate synthase YP_213682.1 4842896 R 272559 CDS YP_213683.1 60683539 3287704 complement(4844677..4845162) 1 NC_003228.3 Similar to Mycoplasma penetrans conserved hypothetical protein mype6770 SWALL:Q8EV89 (EMBL:AP004172) (159 aa) fasta scores: E(): 1.3e-19, 40.97% id in 144 aa, and to Methanosarcina acetivorans predicted protein ma0407 SWALL:Q8TTM2 (EMBL:AE010701) (179 aa) fasta scores: E(): 5.9e-13, 34.09% id in 176 aa; hypothetical protein 4845162 3287704 BF9343_4008 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213683.1 4844677 R 272559 CDS YP_213684.1 60683540 3287702 complement(4845489..4845803) 1 NC_003228.3 Similar to Bacteroides uniformis hypothetical protein SWALL:Q9KI97 (EMBL:AF238307) (193 aa) fasta scores: E(): 3e-17, 84.12% id in 63 aa; putative transmembrane protein 4845803 3287702 BF9343_4009 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213684.1 4845489 R 272559 CDS YP_213685.1 60683541 3287701 4846198..4846395 1 NC_003228.3 no significant database matches; hypothetical protein 4846395 3287701 BF9343_4010 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213685.1 4846198 D 272559 CDS YP_213686.1 60683542 3287690 4846483..4847688 1 NC_003228.3 no significant database matches; hypothetical protein 4847688 3287690 BF9343_4011 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213686.1 4846483 D 272559 CDS YP_213687.1 60683543 3287687 4847786..4848148 1 NC_003228.3 no significant database matches; hypothetical protein 4848148 3287687 BF9343_4012 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213687.1 4847786 D 272559 CDS YP_213688.1 60683544 3287686 4848197..4848727 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron acetyltransferase BT0780 SWALL:Q8A9N5 (EMBL:AE016929) (168 aa) fasta scores: E(): 4.2e-41, 61.81% id in 165 aa, and to Methanosarcina mazei ribosomal-protein-alanine acetyltransferase MM2474 SWALL:Q8PU67 (EMBL:AE013491) (161 aa) fasta scores: E(): 2.7e-16, 35.58% id in 163 aa, and to Xanthomonas axonopodis acetyltransferase XAC3317 SWALL:Q8PHE0 (EMBL:AE011977) (211 aa) fasta scores: E(): 1.9e-12, 29.56% id in 159 aa; putative acetyltransferase 4848727 3287686 BF9343_4013 Bacteroides fragilis NCTC 9343 putative acetyltransferase YP_213688.1 4848197 D 272559 CDS YP_213689.1 60683545 3287679 4851549..4852139 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3031 SWALL:Q8A3C3 (EMBL:AE016938) (208 aa) fasta scores: E(): 4.1e-28, 63.23% id in 204 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT0077 SWALL:Q8ABN3 (EMBL:AE016926) (168 aa) fasta scores: E(): 6.5e-20, 48.45% id in 194 aa; hypothetical protein 4852139 3287679 BF9343_4016 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213689.1 4851549 D 272559 CDS YP_213690.1 60683546 3287684 4853111..4854193 1 NC_003228.3 Similar to Salmonella muenchen mannose-1-phosphate guanylyltransferase ManC or RfbM SWALL:RFBM_SALMU (SWALL:Q00473) (473 aa) fasta scores: E(): 1.6e-40, 37.93% id in 348 aa, and to Bacteroides thetaiotaomicron putative mannose-1-phosphate guanylyltransferase BT2781 SWALL:Q8A423 (EMBL:AE016937) (360 aa) fasta scores: E(): 5.9e-129, 87.22% id in 360 aa; putative mannose-1-phosphate guanylyltransferase 4854193 3287684 BF9343_4017 Bacteroides fragilis NCTC 9343 putative mannose-1-phosphate guanylyltransferase YP_213690.1 4853111 D 272559 CDS YP_213691.1 60683547 3287676 complement(4854363..4854767) 1 NC_003228.3 Similar to Bacillus subtilis Hit family protein or BSU10030 SWALL:HIT_BACSU (SWALL:O07513) (145 aa) fasta scores: E(): 7.6e-10, 41.35% id in 133 aa, and to Bacteroides thetaiotaomicron Hit family protein BT2566 SWALL:Q8A4N3 (EMBL:AE016936) (130 aa) fasta scores: E(): 1.6e-45, 93.79% id in 129 aa; putative Hit-family protein 4854767 3287676 BF9343_4018 Bacteroides fragilis NCTC 9343 putative Hit-family protein YP_213691.1 4854363 R 272559 CDS YP_213692.1 60683548 3289190 complement(4854818..4855282) 1 NC_003228.3 Similar to Rhizobium loti transcription elongation factor GreA or mll2568 SWALL:GREA_RHILO (SWALL:Q98I49) (157 aa) fasta scores: E(): 2.1e-18, 47.02% id in 151 aa, and to Bacteroides thetaiotaomicron transcription elongation factor GreA BT2565 SWALL:Q8A4N4 (EMBL:AE016936) (154 aa) fasta scores: E(): 1e-44, 95.42% id in 153 aa; putative transcription elongation factor 4855282 greA 3289190 greA Bacteroides fragilis NCTC 9343 putative transcription elongation factor YP_213692.1 4854818 R 272559 CDS YP_213693.1 60683549 3287675 complement(4855463..4856614) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2564 SWALL:Q8A4N5 (EMBL:AE016936) (383 aa) fasta scores: E(): 1.4e-115, 76.5% id in 383 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1139 SWALL:AAQ66246 (EMBL:AE017176) (378 aa) fasta scores: E(): 1.8e-27, 28.83% id in 378 aa; hypothetical protein 4856614 3287675 BF9343_4020 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213693.1 4855463 R 272559 CDS YP_213694.1 60683550 3287979 4856811..4858937 1 NC_003228.3 Similar to Bacillus subtilis polyribonucleotide nucleotidyltransferase PnpA or ComR or BSU16690 SWALL:PNP_BACSU (SWALL:P50849) (704 aa) fasta scores: E(): 1.2e-110, 50.21% id in 699 aa, and to Bacteroides thetaiotaomicron polyribonucleotide nucleotidyltransferase BT2563 SWALL:AAO77670 (EMBL:AE016936) (708 aa) fasta scores: E(): 0, 93.5% id in 708 aa; putative polyribonucleotide nucleotidyltransferase 4858937 pnpA 3287979 pnpA Bacteroides fragilis NCTC 9343 putative polyribonucleotide nucleotidyltransferase YP_213694.1 4856811 D 272559 CDS YP_213695.1 60683551 3287669 4859128..4859661 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis RNA polymerase ECF-type sigma factor SWALL:AAQ84479 (EMBL:AY372755) (186 aa) fasta scores: E(): 1.7e-23, 48.21% id in 168 aa, and to Bacteroides thetaiotaomicron putative RNA polymerase ECF-type sigma factor BT2562 SWALL:Q8A4N7 (EMBL:AE016936) (141 aa) fasta scores: E(): 1.5e-39, 78.01% id in 141 aa; putative RNA polymerase ECF-type sigma factor 4859661 3287669 BF9343_4022 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_213695.1 4859128 D 272559 CDS YP_213696.1 60683552 3287670 4859762..4860694 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 7e-17, 28% id in 300 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT2561 SWALL:AAO77668 (EMBL:AE016936) (312 aa) fasta scores: E(): 2e-93, 75% id in 312 aa; putative anti-sigma factor 4860694 3287670 BF9343_4023 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_213696.1 4859762 D 272559 CDS YP_213697.1 60683553 3287668 4860945..4864274 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis outer membrane protein Omp117 SWALL:Q9AF86 (EMBL:AF364409) (1089 aa) fasta scores: E(): 7.8e-74, 36.74% id in 1113 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2560 SWALL:Q8A4N9 (EMBL:AE016936) (1100 aa) fasta scores: E(): 0, 66.27% id in 1112 aa; putative outer membrane protein 4864274 3287668 BF9343_4024 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213697.1 4860945 D 272559 CDS YP_213698.1 60683554 3287663 4864287..4865903 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4471 SWALL:Q89ZA6 (EMBL:AE016945) (531 aa) fasta scores: E(): 1.1e-109, 52.24% id in 534 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4708 SWALL:Q89YM3 (EMBL:AE016946) (531 aa) fasta scores: E(): 4.7e-52, 35.63% id in 536 aa; hypothetical protein 4865903 3287663 BF9343_4025 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213698.1 4864287 D 272559 CDS YP_213699.1 60683555 3287667 4866405..4868024 1 NC_003228.3 no significant database matches; hypothetical protein 4868024 3287667 BF9343_4026 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213699.1 4866405 D 272559 CDS YP_213700.1 60683556 3287665 4868743..4870347 1 NC_003228.3 no significant database matches; hypothetical protein 4870347 3287665 BF9343_4027 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213700.1 4868743 D 272559 CDS YP_213701.1 60683557 3287658 4870373..4871131 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0003 SWALL:Q8ABV7 (EMBL:AE016926) (258 aa) fasta scores: E(): 3e-58, 64.84% id in 256 aa; hypothetical protein 4871131 3287658 BF9343_4028 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213701.1 4870373 D 272559 CDS YP_213702.1 60683558 3287664 complement(4871242..4872357) 1 NC_003228.3 Similar to Clostridium acetobutylicum butyrate kinase 2 Buk2 or CAC1660 SWALL:BUK2_CLOAB (SWALL:Q97II1) (356 aa) fasta scores: E(): 6.4e-67, 51.41% id in 354 aa, and to Bacteroides thetaiotaomicron putative butyrate kinase BT2552 SWALL:Q8A4P5 (EMBL:AE016936) (353 aa) fasta scores: E(): 1.1e-116, 84.65% id in 352 aa; putative butyrate kinase 4872357 3287664 BF9343_4029 Bacteroides fragilis NCTC 9343 putative butyrate kinase YP_213702.1 4871242 R 272559 CDS YP_213703.1 60683559 3287659 complement(4872380..4873321) 1 NC_003228.3 Similar to Rhizobium meliloti phosphate acetyltransferase Pta SWALL:PTA_RHIME (SWALL:Q9X448) (316 aa) fasta scores: E(): 1.3e-24, 35.39% id in 226 aa, and to Bacteroides thetaiotaomicron phosphate butyryltransferase BT2551 SWALL:Q8A4P6 (EMBL:AE016936) (314 aa) fasta scores: E(): 1.9e-107, 92.97% id in 299 aa; putative phosphate acetyl/butyryltransferase 4873321 3287659 BF9343_4030 Bacteroides fragilis NCTC 9343 putative phosphate acetyl/butyryltransferase YP_213703.1 4872380 R 272559 CDS YP_213704.1 60683560 3287651 4873504..4874298 1 NC_003228.3 Similar to Flavobacterium keratolyticus endo-beta-galactosidase SWALL:Q9ZG90 (EMBL:AF083896) (422 aa) fasta scores: E(): 5e-32, 37.75% id in 241 aa, and to Bacteroides thetaiotaomicron beta-glucanase precursor BT2550 SWALL:Q8A4P7 (EMBL:AE016936) (268 aa) fasta scores: E(): 8.7e-82, 74.01% id in 254 aa; putative endo-beta-galactosidase 4874298 3287651 BF9343_4031 Bacteroides fragilis NCTC 9343 putative endo-beta-galactosidase YP_213704.1 4873504 D 272559 CDS YP_213705.1 60683561 3287654 4874363..4875277 1 NC_003228.3 Similar to Escherichia coli muramoyltetrapeptide carboxypeptidase LdcA or B1192 SWALL:LDCA_ECOLI (SWALL:P76008) (304 aa) fasta scores: E(): 8.4e-12, 27.16% id in 254 aa, and to Bacteroides thetaiotaomicron putative carboxypeptidase BT2549 SWALL:Q8A4P8 (EMBL:AE016936) (302 aa) fasta scores: E(): 1.1e-86, 73.48% id in 298 aa, and to Bacillus cereus muramoyltetrapeptide carboxypeptidase bc1367 SWALL:Q81G43 (EMBL:AE017002) (306 aa) fasta scores: E(): 4.7e-27, 34.53% id in 304 aa; putative muramoyltetrapeptide carboxypeptidase 4875277 3287654 BF9343_4032 Bacteroides fragilis NCTC 9343 putative muramoyltetrapeptide carboxypeptidase YP_213705.1 4874363 D 272559 CDS YP_213706.1 60683562 3287653 4875334..4876338 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron leucine aminopeptidase precursor BT2548 SWALL:Q8A4P9 (EMBL:AE016936) (331 aa) fasta scores: E(): 1.1e-100, 74.32% id in 335 aa; hypothetical protein 4876338 3287653 BF9343_4033 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213706.1 4875334 D 272559 CDS YP_213707.1 60683563 3287404 4876348..4876776 1 NC_003228.3 Similar to Escherichia coli SufE protein or B1679 SWALL:SUFE_ECOLI (SWALL:P76194) (138 aa) fasta scores: E(): 8.1e-12, 32.84% id in 137 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2547 SWALL:Q8A4Q0 (EMBL:AE016936) (141 aa) fasta scores: E(): 1.8e-50, 92.9% id in 141 aa; putative SufE Fe/S-cluster-related protein 4876776 sufE 3287404 sufE Bacteroides fragilis NCTC 9343 putative SufE Fe/S-cluster-related protein YP_213707.1 4876348 D 272559 CDS YP_213708.1 60683564 3286649 complement(4876904..4877131) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT2546 SWALL:Q8A4Q1 (EMBL:AE016936) (71 aa) fasta scores: E(): 7.5e-22, 96.97% id in 66 aa, and to Oceanobacillus iheyensis transcriptional regulator ob0417 SWALL:Q8ET46 (EMBL:AP004594) (71 aa) fasta scores: E(): 3.7e-18, 71.83% id in 71 aa, and to Bacillus anthracis DNA-binding protein ba3003 SWALL:Q81P17 (EMBL:AE017033) (71 aa) fasta scores: E(): 1.3e-17, 70.42% id in 71 aa; putative DNA-binding protein 4877131 3286649 BF9343_4035 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_213708.1 4876904 R 272559 CDS YP_213709.1 60683565 3287649 complement(4877160..4877798) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2545 SWALL:Q8A4Q2 (EMBL:AE016936) (218 aa) fasta scores: E(): 3.4e-24, 40.45% id in 220 aa; putative transmembrane protein 4877798 3287649 BF9343_4036 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213709.1 4877160 R 272559 CDS YP_213710.1 60683566 3287652 complement(4877834..4878622) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative metal-dependent membrane protease BT2544 SWALL:Q8A4Q3 (EMBL:AE016936) (267 aa) fasta scores: E(): 3.9e-46, 47.71% id in 262 aa, and to Ralstonia solanacearum probable transmembrane protein RSC3402 or RS01711 SWALL:Q8XTZ3 (EMBL:AL646075) (285 aa) fasta scores: E(): 7.2e-10, 31.63% id in 177 aa, and to Bacillus anthracis CAAX amino terminal protease family protein BA4809 SWALL:Q81L25 (EMBL:AE017038) (242 aa) fasta scores: E(): 2.3e-08, 27.7% id in 213 aa; putative transmembrane CAAX amino terminal protease family 4878622 3287652 BF9343_4037 Bacteroides fragilis NCTC 9343 putative transmembrane CAAX amino terminal protease family YP_213710.1 4877834 R 272559 CDS YP_213711.1 60683567 3286687 4878999..4879166 1 NC_003228.3 hypothetical protein (pseudogene) 4879166 3286687 BF9343_4038 Bacteroides fragilis NCTC 9343 hypothetical protein (pseudogene) YP_213711.1 4878999 D 272559 CDS YP_213712.1 60683568 3287165 4879254..4879442 1 NC_003228.3 hypothetical protein 4879442 3287165 BF9343_4039 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213712.1 4879254 D 272559 CDS YP_213713.1 60683569 3287824 complement(4879536..4880477) 1 NC_003228.3 Similar to Pseudomonas fluorescens riboflavin biosynthesis protein RibF SWALL:RIBF_PSEFL (SWALL:P22990) (311 aa) fasta scores: E(): 1.4e-31, 35.17% id in 307 aa, and to Bacteroides thetaiotaomicron riboflavin biosynthesis protein Ribf, putative riboflavin kinase BT2543 SWALL:Q8A4Q4 (EMBL:AE016936) (320 aa) fasta scores: E(): 1.3e-94, 74.84% id in 314 aa; putative riboflavin biosynthesis protein RibF 4880477 ribF 3287824 ribF Bacteroides fragilis NCTC 9343 putative riboflavin biosynthesis protein RibF YP_213713.1 4879536 R 272559 CDS YP_213714.1 60683570 3287178 complement(4880497..4881120) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative haloacid dehalogenase-like hydrolase BT2542 SWALL:Q8A4Q5 (EMBL:AE016936) (207 aa) fasta scores: E(): 4e-58, 69.6% id in 204 aa, and to Bacteroides thetaiotaomicron haloacid dehalogenase-like hydrolase BT0970 SWALL:Q8A947 (EMBL:AE016929) (206 aa) fasta scores: E(): 2.8e-28, 41.83% id in 196 aa; putative haloacid dehalogenase-type hydrolase 4881120 3287178 BF9343_4041 Bacteroides fragilis NCTC 9343 putative haloacid dehalogenase-type hydrolase YP_213714.1 4880497 R 272559 CDS YP_213715.1 60683571 3287611 complement(4881238..4883922) 1 NC_003228.3 Similar to C-terminus of Arabidopsis thaliana calcium-transporting ATPase 1, plasma membrane-type Aca1 or pea1 or at1g27770 or t22c5.23 or f28l5.1 SWALL:ACA1_ARATH (SWALL:Q37145) (1020 aa) fasta scores: E(): 1.9e-89, 35.43% id in 920 aa, and to Bacteroides thetaiotaomicron putative calcium-transporting ATPase BT2541 SWALL:Q8A4Q6 (EMBL:AE016936) (896 aa) fasta scores: E(): 0, 89.59% id in 894 aa; putative transmembrane calcium-transporting ATPase 4883922 3287611 BF9343_4042 Bacteroides fragilis NCTC 9343 putative transmembrane calcium-transporting ATPase YP_213715.1 4881238 R 272559 CDS YP_213716.1 60683572 3287173 complement(4883986..4885659) 1 NC_003228.3 Similar to Escherichia coli O157:H7 sensor protein EvgS precursor or Z3632 or ECS3249 from codon 540-1080 SWALL:EVGS_ECO57 (SWALL:P58402) (1197 aa) fasta scores: E(): 3.4e-33, 28.25% id in 545 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT2540 SWALL:Q8A4Q7 (EMBL:AE016936) (391 aa) fasta scores: E(): 1.3e-92, 65.7% id in 382 aa; putative two-component system sensor kinase/response regulator fusion protein 4885659 3287173 BF9343_4043 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_213716.1 4883986 R 272559 CDS YP_213717.1 60683573 3287172 complement(4886033..4887730) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative Na+-dependent phosphate transporter BT2528 SWALL:Q8A4R9 (EMBL:AE016936) (565 aa) fasta scores: E(): 1.7e-200, 96.28% id in 565 aa, and to Treponema pallidum conserved hypothetical integral membrane protein tp0771 SWALL:O83750 (EMBL:AE001248) (593 aa) fasta scores: E(): 5.7e-50, 33.03% id in 557 aa, and to Rhodopirellula baltica hypothetical protein rb8909 SWALL:Q7UMC5 (EMBL:BX294148) (560 aa) fasta scores: E(): 2.8e-46, 34.24% id in 473 aa; putative transmembrane Na+/Pi-cotransporter 4887730 3287172 BF9343_4044 Bacteroides fragilis NCTC 9343 putative transmembrane Na+/Pi-cotransporter YP_213717.1 4886033 R 272559 CDS YP_213718.1 60683574 3287612 4887823..4889487 1 NC_003228.3 Similar to Bacillus subtilis threonyl-tRNA synthetase 1 ThrS or ThrSV or BSU28950 SWALL:SYT1_BACSU (SWALL:P18255) (643 aa) fasta scores: E(): 2.5e-05, 25.1% id in 239 aa, and to Bacteroides thetaiotaomicron uridine kinase BT2527 SWALL:Q8A4S0 (EMBL:AE016936) (557 aa) fasta scores: E(): 8.2e-198, 90.79% id in 554 aa; putative phosphoribulose/uridine kinase 4889487 3287612 BF9343_4045 Bacteroides fragilis NCTC 9343 putative phosphoribulose/uridine kinase YP_213718.1 4887823 D 272559 CDS YP_213719.1 60683575 3287145 4889725..4891278 1 NC_003228.3 C-terminus is similar to Escherichia coli O157:H7 sensor for Ctr capsule biosynthesis, probable histidine kinase acting on RcsB, RcsC or Z3477 or ECS3107 (from codon 418-670) SWALL:Q8XE39 (EMBL:AE005454) (933 aa) fasta scores: E(): 1.5e-07, 25.86% id in 259 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BT2850 SWALL:Q8A3V4 (EMBL:AE016937) (517 aa) fasta scores: E(): 1.1e-138, 73.06% id in 516 aa; putative two-component regulator sensor histidine kinase transcriptional regulator 4891278 3287145 BF9343_4046 Bacteroides fragilis NCTC 9343 putative two-component regulator sensor histidine kinase transcriptional regulator YP_213719.1 4889725 D 272559 CDS YP_213720.1 60683576 3287171 complement(4891505..4893331) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2810 SWALL:Q8A3Z4 (EMBL:AE016937) (611 aa) fasta scores: E(): 1.1e-190, 71.71% id in 608 aa, and to Rhodopirellula baltica probable secreted protein rb8407 SWALL:Q7UFQ7 (EMBL:BX294147) (281 aa) fasta scores: E(): 7.7e-24, 37.45% id in 251 aa; hypothetical protein 4893331 3287171 BF9343_4047 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213720.1 4891505 R 272559 CDS YP_213721.1 60683577 3287615 complement(4893722..4895308) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2373 SWALL:Q8A569 (EMBL:AE016935) (520 aa) fasta scores: E(): 6.2e-58, 43.77% id in 530 aa; conserved hypothetical exported protein, possible ATP/GTP-binding 4895308 3287615 BF9343_4048 Bacteroides fragilis NCTC 9343 conserved hypothetical exported protein, possible ATP/GTP-binding YP_213721.1 4893722 R 272559 CDS YP_213722.1 60683578 3287177 complement(4895326..4897263) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2374 SWALL:Q8A568 (EMBL:AE016935) (651 aa) fasta scores: E(): 8.4e-200, 75.36% id in 621 aa; hypothetical protein 4897263 3287177 BF9343_4049 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213722.1 4895326 R 272559 CDS YP_213723.1 60683579 3287182 complement(4897673..4898134) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1990 SWALL:Q8A695 (EMBL:AE016934) (161 aa) fasta scores: E(): 0.00063, 23.17% id in 151 aa, and to previously sequenced Bacteroides fragilis hypothetical protein ORF8 SWALL:Q9F747 (EMBL:AF285774) (157 aa) fasta scores: E(): 0.01, 26% id in 150 aa; hypothetical protein 4898134 3287182 BF9343_4050 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213723.1 4897673 R 272559 CDS YP_213724.1 60683580 3287613 complement(4898718..4900091) 1 NC_003228.3 Similar to Escherichia coli Xaa-Pro aminopeptidase PepP or B2908 SWALL:AMPP_ECOLI (SWALL:P15034) (440 aa) fasta scores: E(): 1.4e-19, 31.34% id in 469 aa, and to Bacteroides thetaiotaomicron Xaa-Pro aminopeptidase BT2522 SWALL:Q8A4S5 (EMBL:AE016936) (457 aa) fasta scores: E(): 2.7e-160, 88.62% id in 457 aa, and to Fusobacterium nucleatum Xaa-Pro dipeptidase FN1949 SWALL:Q8RHQ3 (EMBL:AE010497) (462 aa) fasta scores: E(): 4e-74, 46.5% id in 458 aa; putative aminopeptidase 4900091 3287613 BF9343_4051 Bacteroides fragilis NCTC 9343 putative aminopeptidase YP_213724.1 4898718 R 272559 CDS YP_213725.1 60683581 3287179 4900356..4901834 1 NC_003228.3 Similar to Shewanella violacea RNA polymerase sigma-54 factor RpoN SWALL:RP54_SHEVI (SWALL:Q9S0L2) (492 aa) fasta scores: E(): 9.7e-22, 31.16% id in 507 aa, and to Bacteroides thetaiotaomicron RNA polymerase sigma-54 BT2521 SWALL:Q8A4S6 (EMBL:AE016936) (494 aa) fasta scores: E(): 2.9e-149, 86.84% id in 494 aa; putative RNA polymerase sigma-54 factor 4901834 3287179 BF9343_4052 Bacteroides fragilis NCTC 9343 putative RNA polymerase sigma-54 factor YP_213725.1 4900356 D 272559 CDS YP_213726.1 60683582 3287155 4901858..4902538 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2520 SWALL:Q8A4S7 (EMBL:AE016936) (223 aa) fasta scores: E(): 6.6e-71, 80.63% id in 222 aa, and to Chlorobium tepidum hypothetical protein CT0762 SWALL:Q8KEC7 (EMBL:AE012846) (197 aa) fasta scores: E(): 3.1e-07, 23.81% id in 189 aa; putative transmembrane protein 4902538 3287155 BF9343_4053 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213726.1 4901858 D 272559 CDS YP_213727.1 60683583 3287614 4902569..4902949 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhi, and Shigella flexneri glycine cleavage system H protein SWALL:GCSH_ECOLI (SWALL:P23884) (128 aa) fasta scores: E(): 1e-19, 50% id in 124 aa, and to Bacteroides thetaiotaomicron glycine cleavage system H protein GcvH or BT2519 SWALL:GCSH_BACTN (SWALL:Q8A4S8) (126 aa) fasta scores: E(): 3.2e-39, 87.2% id in 125 aa, and to Porphyromonas gingivalis W83 glycine cleavage system H protein GcvH or PG0950 SWALL:AAQ66080 (EMBL:AE017175) (126 aa) fasta scores: E(): 6.1e-29, 65.32% id in 124 aa; putative glycine cleavage system H protein 4902949 3287614 BF9343_4054 Bacteroides fragilis NCTC 9343 putative glycine cleavage system H protein YP_213727.1 4902569 D 272559 CDS YP_213728.1 60683584 3289342 4903141..4903647 1 NC_003228.3 Similar to Bacillus subtilis phosphoribosylaminoimidazole carboxylase catalytic subunit PurE or BSU06420 SWALL:PUR6_BACSU (SWALL:P12044) (162 aa) fasta scores: E(): 9e-26, 54.03% id in 161 aa, and to Bacteroides thetaiotaomicron phosphoribosylaminoimidazole carboxylase BT2518 SWALL:Q8A4S9 (EMBL:AE016936) (171 aa) fasta scores: E(): 8e-47, 85.2% id in 169 aa; putative transmembrane phosphoribosylaminoimidazole carboxylase 4903647 purE 3289342 purE Bacteroides fragilis NCTC 9343 putative transmembrane phosphoribosylaminoimidazole carboxylase YP_213728.1 4903141 D 272559 CDS YP_213729.1 60683585 3287161 4903652..4905532 1 NC_003228.3 Similar to Arabidopsis thaliana GcpE protein SWALL:Q9FF59 (EMBL:AB005246) (716 aa) fasta scores: E(): 4.8e-51, 41.96% id in 653 aa, and to Bacteroides thetaiotaomicron GcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase BT2517 SWALL:Q8A4T0 (EMBL:AE016936) (613 aa) fasta scores: E(): 4.4e-208, 86.98% id in 607 aa; putative GcpE terpenoid biosynthesis protein 4905532 3287161 BF9343_4056 Bacteroides fragilis NCTC 9343 putative GcpE terpenoid biosynthesis protein YP_213729.1 4903652 D 272559 CDS YP_213730.1 60683586 3287160 complement(4905725..4906498) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3286 SWALL:Q8A2L9 (EMBL:AE016939) (255 aa) fasta scores: E(): 6.9e-75, 70.81% id in 257 aa, and to Thermotoga maritima hypothetical protein Tm0033 TM0033 SWALL:Q9WXP0 (EMBL:AE001691) (395 aa) fasta scores: E(): 8.1e-27, 39.14% id in 235 aa; hypothetical protein 4906498 3287160 BF9343_4057 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213730.1 4905725 R 272559 CDS YP_213731.1 60683587 3287618 complement(4906511..4908232) 1 NC_003228.3 Similar to Rhizobium leguminosarum putative XynA SWALL:Q93E12 (EMBL:AF372655) (537 aa) fasta scores: E(): 0.027, 25.81% id in 275 aa, and to Bacteroides thetaiotaomicron putative beta-xylosidase BT3108 SWALL:Q8A347 (EMBL:AE016939) (329 aa) fasta scores: E(): 1.4e-06, 25.16% id in 298 aa; possible xylosidase/arabinosidase 4908232 3287618 BF9343_4058 Bacteroides fragilis NCTC 9343 possible xylosidase/arabinosidase YP_213731.1 4906511 R 272559 CDS YP_213732.1 60683588 3287166 complement(4908254..4909546) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3566 SWALL:Q8A1U2 (EMBL:AE016941) (454 aa) fasta scores: E(): 1.5e-94, 51.98% id in 454 aa, and to Agrobacterium tumefaciens hypothetical protein atu3054 or agr_l_3503 SWALL:Q8UBG2 (EMBL:AE009236) (425 aa) fasta scores: E(): 9.7e-72, 45.2% id in 396 aa; hypothetical protein 4909546 3287166 BF9343_4059 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213732.1 4908254 R 272559 CDS YP_213733.1 60683589 3287170 complement(4909780..4911300) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrH SWALL:Q8VTA8 (EMBL:AF329100) (495 aa) fasta scores: E(): 3.7e-15, 25.56% id in 528 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3089 SWALL:Q8A366 (EMBL:AE016938) (496 aa) fasta scores: E(): 5e-26, 31.19% id in 529 aa; putative outer membrane protein 4911300 3287170 BF9343_4060 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213733.1 4909780 R 272559 CDS YP_213734.1 60683590 3287616 complement(4911407..4914403) 1 NC_003228.3 Similar to Bacteroides caccae TonB-linked outer membrane protein OmpW SWALL:Q93FV1 (EMBL:AF305878) (947 aa) fasta scores: E(): 1.9e-66, 35.53% id in 971 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3090 SWALL:Q8A365 (EMBL:AE016938) (999 aa) fasta scores: E(): 1.1e-101, 39.07% id in 1021 aa; putative TonB-linked outer membrane protein 4914403 3287616 BF9343_4061 Bacteroides fragilis NCTC 9343 putative TonB-linked outer membrane protein YP_213734.1 4911407 R 272559 CDS YP_213735.1 60683591 3289242 complement(4915150..4917444) 1 NC_003228.3 Similar to Salmonella typhimurium periplasmic beta-glucosidase precursor BglX or STM2166 SWALL:BGLX_SALTY (SWALL:Q56078) (765 aa) fasta scores: E(): 3.9e-132, 47.9% id in 739 aa, and previously sequenced Bacteroides fragilis beta-glucosidase SWALL:O31356 (EMBL:AF006658) (764 aa) fasta scores: E(): 0, 99.6% id in 764 aa, and to Flavobacterium meningosepticum beta-glucosidase Bgl SWALL:O30713 (EMBL:AF015915) (726 aa) fasta scores: E(): 2e-187, 66.89% id in 722 aa; periplasmic beta-glucosidase precursor 4917444 bglX 3289242 bglX Bacteroides fragilis NCTC 9343 periplasmic beta-glucosidase precursor YP_213735.1 4915150 R 272559 CDS YP_213736.1 60683592 3287135 complement(4917622..4920465) 1 NC_003228.3 C-terminus is similar to Cytophaga johnsonae Fjo23 (fragment)SWALL:Q8KRM6 (EMBL:AF527793) (434 aa) fasta scores: E(): 2e-14, 26.23% id in 446 aa, and C-terminus is similar to Microscilla sp. PRE1 ms139, putative GGDEF family protein SWALL:Q93P92 (EMBL:AF339846) (524 aa) fasta scores: E(): 8.1e-14, 35.82% id in 187 aa; hypothetical protein 4920465 3287135 BF9343_4063 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213736.1 4917622 R 272559 CDS YP_213737.1 60683593 3287333 complement(4920640..4922322) 1 NC_003228.3 Similar to Bartonella bacilliformis carboxy-terminal processing protease precursor CtpA SWALL:CTPA_BARBA (SWALL:Q44879) (434 aa) fasta scores: E(): 2.5e-33, 35.08% id in 362 aa, and to Bacteroides thetaiotaomicron carboxy-terminal processing protease precursor BT2798 SWALL:Q8A406 (EMBL:AE016937) (565 aa) fasta scores: E(): 4e-173, 82.7% id in 561 aa; putative carboxy-terminal processing protease precursor 4922322 3287333 BF9343_4064 Bacteroides fragilis NCTC 9343 putative carboxy-terminal processing protease precursor YP_213737.1 4920640 R 272559 CDS YP_213738.1 60683594 3287617 complement(4922367..4923356) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative PfkB family carbohydrate kinase BT2799 SWALL:Q8A405 (EMBL:AE016937) (329 aa) fasta scores: E(): 4.2e-105, 86.06% id in 330 aa, and to Prochlorococcus marinus subsp. pastoris possible carbohydrate kinase pmm0505 SWALL:Q7V2H2 (EMBL:BX572091) (338 aa) fasta scores: E(): 3.7e-33, 38.53% id in 314 aa, and to Rhizobium loti putative sugar kinase protein msi165 SWALL:Q8KJH1 (EMBL:AL672113) (330 aa) fasta scores: E(): 6.4e-33, 37.5% id in 312 aa; putative PfkB family carbohydrate kinase 4923356 3287617 BF9343_4065 Bacteroides fragilis NCTC 9343 putative PfkB family carbohydrate kinase YP_213738.1 4922367 R 272559 CDS YP_213739.1 60683595 3287140 complement(4923732..4926194) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3674 SWALL:AAO78779 (EMBL:AE016941) (668 aa) fasta scores: E(): 8.9e-53, 41.39% id in 686 aa, and to Rhizobium loti hypothetical protein Mlr2247 SWALL:Q98IU3 (EMBL:AP002999) (662 aa) fasta scores: E(): 2.8e-52, 37.3% id in 638 aa; hypothetical protein 4926194 3287140 BF9343_4066 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213739.1 4923732 R 272559 CDS YP_213740.1 60683596 3287138 complement(4926196..4928949) 1 NC_003228.3 Similar to Bradyrhizobium japonicum id880 or BLL2087 SWALL:Q9AMT5 (EMBL:AF322013) (936 aa) fasta scores: E(): 4.5e-42, 33.29% id in 844 aa; hypothetical protein 4928949 3287138 BF9343_4067 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213740.1 4926196 R 272559 CDS YP_213741.1 60683597 3287621 complement(4929095..4930402) 1 NC_003228.3 no significant database matches; hypothetical protein 4930402 3287621 BF9343_4068 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213741.1 4929095 R 272559 CDS YP_213742.1 60683598 3287545 complement(4930421..4932400) 1 NC_003228.3 Similar to Bacteroides fragilis putative outer membrane protein SWALL:Q84ID2 (EMBL:AB102772) (543 aa) fasta scores: E(): 5.2e-05, 26.19% id in 420 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2532 SWALL:Q8A4R5 (EMBL:AE016936) (675 aa) fasta scores: E(): 2.7e-11, 23.38% id in 620 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3331 SWALL:Q8A2H4 (EMBL:AE016940) (572 aa) fasta scores: E(): 3.4e-08, 24.59% id in 549 aa; putative outer membrane protein 4932400 3287545 BF9343_4069 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213742.1 4930421 R 272559 CDS YP_213743.1 60683599 3287577 complement(4932413..4935583) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron SusC, outer membrane protein involved in starch binding SusC or BT3702 SWALL:Q8A1G1 (EMBL:AE016941) (1003 aa) fasta scores: E(): 1e-57, 27.45% id in 1078 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT4660 SWALL:Q89YS1 (EMBL:AE016946) (1047 aa) fasta scores: E(): 1.2e-88, 32.37% id in 1075 aa; putative outer membrane protein 4935583 3287577 BF9343_4070 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213743.1 4932413 R 272559 CDS YP_213744.1 60683600 3287619 4935903..4939931 1 NC_003228.3 Similar to Porphyromonas gingivalis regulator of gingipain and black pigmentation GppX SWALL:Q7WUA4 (EMBL:AB109632) (961 aa) fasta scores: E(): 7.2e-44, 29.96% id in 564 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT3334 SWALL:Q8A2H1 (EMBL:AE016940) (1354 aa) fasta scores: E(): 2e-105, 27.99% id in 1379 aa; putative two-component system sensor kinase/response regulator fusion protein 4939931 3287619 BF9343_4071 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_213744.1 4935903 D 272559 CDS YP_213745.1 60683601 3287564 4940130..4940915 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri pyruvate formate-lyase 1 activating enzyme PflA or Act or B0902 or C1038 or Z1246 or ECS0985 or SF0897 or S0961 SWALL:PFLA_ECOLI (SWALL:P09374) (245 aa) fasta scores: E(): 1.4e-18, 30.93% id in 236 aa, and to Lactobacillus plantarum formate acetyltransferase activating enzyme PflA1 or LP_2596 SWALL:Q88UB1 (EMBL:AL935259) (267 aa) fasta scores: E(): 5.6e-30, 39.05% id in 233 aa, and to Streptococcus pyogenes putative pyruvate formate-lyase activating enzyme SPYM18_2117 SWALL:Q8NZ62 (EMBL:AE010114) (257 aa) fasta scores: E(): 2e-29, 38.66% id in 225 aa; putative pyruvate formate-lyase activating enzyme 4940915 3287564 BF9343_4072 Bacteroides fragilis NCTC 9343 putative pyruvate formate-lyase activating enzyme YP_213745.1 4940130 D 272559 CDS YP_213746.1 60683602 3287831 4940912..4942981 1 NC_003228.3 Similar to Escherichia coli formate acetyltransferase 2 PflD or B3951 SWALL:PFLD_ECOLI (SWALL:P32674) (765 aa) fasta scores: E(): 1.7e-25, 29.39% id in 609 aa, and to Methanobacterium thermoautotrophicum formate acetyltransferase 2 MTH346 SWALL:O26446 (EMBL:AE000819) (642 aa) fasta scores: E(): 3e-26, 26.62% id in 676 aa; putative formate acetyltransferase (pyruvate formate-lyase) 4942981 pflD 3287831 pflD Bacteroides fragilis NCTC 9343 putative formate acetyltransferase (pyruvate formate-lyase) YP_213746.1 4940912 D 272559 CDS YP_213747.1 60683603 3287535 4942994..4944313 1 NC_003228.3 Similar to Lactobacillus brevis D-xylose-proton symporter XylT SWALL:XYLT_LACBR (SWALL:O52733) (457 aa) fasta scores: E(): 5.2e-54, 37.67% id in 438 aa, and to Bacillus subtilis similar to metabolite transport proteins YwtG SWALL:P96742 (EMBL:Z92954) (457 aa) fasta scores: E(): 3.7e-51, 33.63% id in 440 aa; putative transmembrane sugar transporter 4944313 3287535 BF9343_4074 Bacteroides fragilis NCTC 9343 putative transmembrane sugar transporter YP_213747.1 4942994 D 272559 CDS YP_213748.1 60683604 3287620 4944349..4945479 1 NC_003228.3 Similar to Acinetobacter calcoaceticus aldose 1-epimerase precursor Mro SWALL:GALM_ACICA (SWALL:P05149) (381 aa) fasta scores: E(): 3.1e-56, 41.79% id in 378 aa, and to Bacteroides thetaiotaomicron aldose 1-epimerase precursor BT3529 SWALL:Q8A1X9 (EMBL:AE016941) (377 aa) fasta scores: E(): 7.1e-72, 50.13% id in 379 aa; putative aldose 1-epimerase precursor 4945479 3287620 BF9343_4075 Bacteroides fragilis NCTC 9343 putative aldose 1-epimerase precursor YP_213748.1 4944349 D 272559 CDS YP_213749.1 60683605 3287538 4945476..4947551 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2097 SWALL:Q8A5Y9 (EMBL:AE016934) (687 aa) fasta scores: E(): 5e-193, 65.07% id in 693 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3674 SWALL:Q8A1I7 (EMBL:AE016941) (668 aa) fasta scores: E(): 2.8e-50, 32.2% id in 711 aa; hypothetical protein 4947551 3287538 BF9343_4076 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213749.1 4945476 D 272559 CDS YP_213750.1 60683606 3287566 4947659..4947940 1 NC_003228.3 Similar to Neisseria meningitidis hypothetical protein NMB1575 SWALL:Q9JYI1 (EMBL:AE002508) (97 aa) fasta scores: E(): 1.7e-08, 45% id in 80 aa, and to Neisseria meningitidis hypothetical protein NMA1764 SWALL:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 1.7e-08, 45% id in 80 aa; hypothetical protein 4947940 3287566 BF9343_4077 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213750.1 4947659 D 272559 CDS YP_213751.1 60683607 3287604 complement(4947987..4948679) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative amidophosphoribosyl-transferase BT2800 SWALL:Q8A404 (EMBL:AE016937) (235 aa) fasta scores: E(): 1.9e-64, 68.69% id in 230 aa, and to Porphyromonas gingivalis W83 competence protein F-related protein PG0158 SWALL:AAQ65398 (EMBL:AE017172) (246 aa) fasta scores: E(): 6.5e-23, 40.8% id in 223 aa, and to Chlorobium tepidum competence protein comF or CT2006 SWALL:Q8KAZ2 (EMBL:AE012951) (225 aa) fasta scores: E(): 2.5e-18, 35.39% id in 226 aa; possible amidophosphoribosyl-transferase 4948679 3287604 BF9343_4078 Bacteroides fragilis NCTC 9343 possible amidophosphoribosyl-transferase YP_213751.1 4947987 R 272559 CDS YP_213752.1 60683608 3287405 complement(4948714..4949520) 1 NC_003228.3 Similar to Pseudomonas aeruginosa inositol-1-monophosphatase SuhB or pa3818 SWALL:SUHB_PSEAE (SWALL:Q9HXI4) (271 aa) fasta scores: E(): 4.2e-29, 38.72% id in 266 aa, and to Bacteroides thetaiotaomicron inositol-1-monophosphatase BT2801 SWALL:Q8A403 (EMBL:AE016937) (267 aa) fasta scores: E(): 1.9e-90, 78.57% id in 266 aa; putative inositol-1-monophosphatase 4949520 suhB 3287405 suhB Bacteroides fragilis NCTC 9343 putative inositol-1-monophosphatase YP_213752.1 4948714 R 272559 CDS YP_213753.1 60683609 3287581 4949638..4950348 1 NC_003228.3 no significant database matches; hypothetical protein 4950348 3287581 BF9343_4080 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213753.1 4949638 D 272559 CDS YP_213754.1 60683610 3287261 complement(4950432..4951922) 1 NC_003228.3 Similar to Phanerochaete chrysosporium alpha-galactosidase AgaL SWALL:Q9HFZ9 (EMBL:AF246263) (438 aa) fasta scores: E(): 1.4e-42, 40% id in 360 aa, and to Bacteroides thetaiotaomicron alpha-galactosidase precursor BT3065 SWALL:Q8A389 (EMBL:AE016938) (503 aa) fasta scores: E(): 2.9e-158, 75.35% id in 499 aa; putative alpha-galactosidase/melibiase 4951922 3287261 BF9343_4081 Bacteroides fragilis NCTC 9343 putative alpha-galactosidase/melibiase YP_213754.1 4950432 R 272559 CDS YP_213755.1 60683611 3287622 complement(4951949..4953082) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 7.9e-06, 24.03% id in 362 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 6.8e-05, 22% id in 400 aa; hypothetical protein 4953082 3287622 BF9343_4082 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213755.1 4951949 R 272559 CDS YP_213756.1 60683612 3287268 complement(4953091..4954263) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 8.5e-06, 23.23% id in 396 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 2.9e-05, 23.47% id in 409 aa; hypothetical protein 4954263 3287268 BF9343_4083 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213756.1 4953091 R 272559 CDS YP_213757.1 60683613 3287419 complement(4954420..4955181) 1 NC_003228.3 no significant database matches; hypothetical protein 4955181 3287419 BF9343_4084 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213757.1 4954420 R 272559 CDS YP_213758.1 60683614 3288013 complement(4955172..4955774) 1 NC_003228.3 no significant database matches; hypothetical protein 4955774 3288013 BF9343_4085 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213758.1 4955172 R 272559 CDS YP_213759.1 60683615 3287282 complement(4955806..4956432) 1 NC_003228.3 Similar to Streptococcus pneumoniae lipopolysaccharide biosynthesis LicD1 or sp1273 SWALL:Q9X4D4 (EMBL:AF106539) (267 aa) fasta scores: E(): 9.7e-09, 25.59% id in 254 aa, and to Lactobacillus plantarum lipopolysaccharide biosynthesis protein LicD or LP_0844 SWALL:Q88YD0 (EMBL:AL935254) (269 aa) fasta scores: E(): 2.3e-10, 29.71% id in 249 aa; putative lipopolysaccharide biosynthesis protein 4956432 3287282 BF9343_4086 Bacteroides fragilis NCTC 9343 putative lipopolysaccharide biosynthesis protein YP_213759.1 4955806 R 272559 CDS YP_213760.1 60683616 3287300 complement(4956429..4958234) 1 NC_003228.3 C-terminus is similar to Salmonella typhimurium L-threonine-O-3-phosphate decarboxylase CobD or STM0644 SWALL:COBD_SALTY (SWALL:P97084) (364 aa) fasta scores: E(): 6.2e-21, 32.46% id in 345 aa, and entire protein is similar to Prevotella intermedia hemolysin erythrocyte lysis protein 2 SWALL:O68622 (EMBL:AF052516) (606 aa) fasta scores: E(): 2.1e-123, 50.41% id in 601 aa, and to Photorhabdus luminescens subsp. laumondii TTO1 similar to hemolysin erythrocyte lysis protein 2 PLU1412 SWALL:CAE13705 (EMBL:BX571863) (618 aa) fasta scores: E(): 5.1e-60, 32.22% id in 599 aa; hypothetical protein 4958234 3287300 BF9343_4087 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213760.1 4956429 R 272559 CDS YP_213761.1 60683617 3287605 complement(4958348..4959598) 1 NC_003228.3 no significant database matches; hypothetical protein 4959598 3287605 BF9343_4088 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213761.1 4958348 R 272559 CDS YP_213762.1 60683618 3287285 complement(4959595..4961079) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR or BT0238 SWALL:CHUR_BACTN (SWALL:Q02550) (414 aa) fasta scores: E(): 5e-06, 25.63% id in 355 aa, and to Clostridium acetobutylicum Fe-S oxidoreductase CAC0658 SWALL:Q97LA4 (EMBL:AE007581) (518 aa) fasta scores: E(): 2.3e-20, 25.73% id in 474 aa, and to Clostridium acetobutylicum heme biosynthesis CAC2279 SWALL:Q97GT6 (EMBL:AE007729) (454 aa) fasta scores: E(): 1.1e-09, 25.11% id in 446 aa. Possible alternative start site at codon 87; possible regulatory protein 4961079 3287285 BF9343_4089 Bacteroides fragilis NCTC 9343 possible regulatory protein YP_213762.1 4959595 R 272559 CDS YP_213763.1 60683619 3287493 complement(4961086..4962351) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:Q8AA04 (EMBL:AE016928) (408 aa) fasta scores: E(): 6.5e-07, 21.56% id in 357 aa; hypothetical protein 4962351 3287493 BF9343_4090 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213763.1 4961086 R 272559 CDS YP_213764.1 60683620 3287606 complement(4962477..4962713) 1 NC_003228.3 no significant database matches; hypothetical protein 4962713 3287606 BF9343_4091 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213764.1 4962477 R 272559 CDS YP_213765.1 60683621 3287463 complement(4962762..4964009) 1 NC_003228.3 Similar to Streptococcus suis capsular polysaccharide locus Cps2g SWALL:Q9X4V1 (EMBL:AF118389) (385 aa) fasta scores: E(): 4.4e-08, 25.39% id in 256 aa, and to Clostridium perfringens probable hexosyltransferase CPE0499 SWALL:Q8XN39 (EMBL:AP003187) (375 aa) fasta scores: E(): 1.8e-13, 30% id in 310 aa; putative glycosyl transferase 4964009 3287463 BF9343_4092 Bacteroides fragilis NCTC 9343 putative glycosyl transferase YP_213765.1 4962762 R 272559 CDS YP_213766.1 60683622 3287453 4964224..4965573 1 NC_003228.3 Similar to Neisseria gonorrhoeae LgtC SWALL:Q9REX5 (EMBL:AF208062) (307 aa) fasta scores: E(): 3.6e-11, 27.96% id in 261 aa, and to Haemophilus influenzae hypothetical protein Hi0258 SWALL:Y258_HAEIN (SWALL:P43974) (330 aa) fasta scores: E(): 7.6e-22, 33.09% id in 278 aa, and to Pasteurella multocida putative glycosyl transferase LgtC SWALL:Q9L6B2 (EMBL:AF237927) (302 aa) fasta scores: E(): 1.6e-14, 27.56% id in 283 aa; Similar to Neisseria gonorrhoeae glycosyl transferase LgtC SWALL:Q50948 (EMBL:U14554) (306 aa) fasta scores: E(): 3.5e-12, 28.07% id in 260 aa, and to Haemophilus influenzae hypothetical protein Hi0258 SWALL:Y258_HAEIN (SWALL:P43974) (330 aa) fasta scores: E(): 7.6e-22, 33.09% id in 278 aa; putative glycosyltransferase; putative glycosyl transferase 4965573 3287453 BF9343_4093 Bacteroides fragilis NCTC 9343 putative glycosyl transferase YP_213766.1 4964224 D 272559 CDS YP_213767.1 60683623 3287608 complement(4965634..4966749) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 1.6e-09, 23.01% id in 391 aa; hypothetical protein 4966749 3287608 BF9343_4094 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213767.1 4965634 R 272559 CDS YP_213768.1 60683624 3287498 complement(4966771..4967598) 1 NC_003228.3 no significant database matches; hypothetical protein 4967598 3287498 BF9343_4095 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213768.1 4966771 R 272559 CDS YP_213769.1 60683625 3287444 complement(4967612..4967983) 1 NC_003228.3 no significant database matches; hypothetical protein 4967983 3287444 BF9343_4096 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213769.1 4967612 R 272559 CDS YP_213770.1 60683626 3287426 complement(4968041..4969306) 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 0.0012, 19.05% id in 425 aa; hypothetical protein 4969306 3287426 BF9343_4097 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213770.1 4968041 R 272559 CDS YP_213771.1 60683627 3287279 complement(4969371..4970651) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0661 SWALL:AAO75768 (EMBL:AE016928) (408 aa) fasta scores: E(): 4.2e-08, 22.36% id in 313 aa; hypothetical protein 4970651 3287279 BF9343_4098 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213771.1 4969371 R 272559 CDS YP_213772.1 60683628 3287330 complement(4970718..4972019) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 2.9e-08, 23.81% id in 273 aa; hypothetical protein 4972019 3287330 BF9343_4099 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213772.1 4970718 R 272559 CDS YP_213773.1 60683629 3287329 complement(4972073..4973389) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0664 SWALL:AAO75771 (EMBL:AE016928) (382 aa) fasta scores: E(): 2.7e-06, 27.81% id in 284 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT2848 SWALL:AAO77954 (EMBL:AE016937) (402 aa) fasta scores: E(): 9e-05, 23.79% id in 374 aa; hypothetical protein 4973389 3287329 BF9343_4100 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213773.1 4972073 R 272559 CDS YP_213774.1 60683630 3287317 complement(4973554..4973913) 1 NC_003228.3 Similar to C-terminus of Bacteroides thetaiotaomicron two-component system response regulator BT1457 SWALL:AAO76564 (EMBL:AE016931) (243 aa) fasta scores: E(): 0.29, 31.95% id in 97 aa; putative DNA-binding protein 4973913 3287317 BF9343_4101 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_213774.1 4973554 R 272559 CDS YP_213775.1 60683631 3287372 complement(4974270..4975457) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3056 SWALL:AAO78162 (EMBL:AE016938) (409 aa) fasta scores: E(): 8.6e-25, 28.01% id in 407 aa; hypothetical protein 4975457 3287372 BF9343_4102 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213775.1 4974270 R 272559 CDS YP_213776.1 60683632 3287263 complement(4975625..4976806) 1 NC_003228.3 no significant database matches; hypothetical protein 4976806 3287263 BF9343_4103 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213776.1 4975625 R 272559 CDS YP_213777.1 60683633 3287308 complement(4977652..4979310) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2848 SWALL:Q8A3V6 (EMBL:AE016937) (402 aa) fasta scores: E(): 8.1e-43, 38.5% id in 400 aa; hypothetical protein 4979310 3287308 BF9343_4105 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213777.1 4977652 R 272559 CDS YP_213778.1 60683634 3287322 4979507..4980031 1 NC_003228.3 Similar to Escherichia coli NADH pyrophosphatase NudC or B3996 SWALL:NUDC_ECOLI (SWALL:P32664) (257 aa) fasta scores: E(): 1.7e-05, 32% id in 100 aa, and to Bacteroides thetaiotaomicron putative MutT family protein BT2815 SWALL:Q8A3Y9 (EMBL:AE016937) (174 aa) fasta scores: E(): 2.1e-57, 81.97% id in 172 aa; putative MutT/NUDIX family protein 4980031 3287322 BF9343_4106 Bacteroides fragilis NCTC 9343 putative MutT/NUDIX family protein YP_213778.1 4979507 D 272559 CDS YP_213779.1 60683635 3287255 4980071..4983079 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TPR-domain containing protein BT2816 SWALL:Q8A3Y8 (EMBL:AE016937) (1003 aa) fasta scores: E(): 0, 80.55% id in 1003 aa, and to Porphyromonas gingivalis W83 TPR domain protein PG1651 SWALL:AAQ66670 (EMBL:AE017177) (995 aa) fasta scores: E(): 5.3e-87, 30.52% id in 1009 aa; putative TPR-repeat protein 4983079 3287255 BF9343_4107 Bacteroides fragilis NCTC 9343 putative TPR-repeat protein YP_213779.1 4980071 D 272559 CDS YP_213780.1 60683636 3287314 4983086..4984789 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative TonB-dependent receptor BT2817 SWALL:AAO77923 (EMBL:AE016937) (573 aa) fasta scores: E(): 8e-122, 57.36% id in 591 aa; hypothetical protein 4984789 3287314 BF9343_4108 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213780.1 4983086 D 272559 CDS YP_213781.1 60683637 3286482 4985068..4987413 1 NC_003228.3 Similar to Zymomonas mobilis DNA topoisomerase I TopA SWALL:TOP1_ZYMMO (SWALL:Q9X3X7) (1217 aa) fasta scores: E(): 1.3e-73, 39.36% id in 663 aa, and to Bacteroides thetaiotaomicron DNA topoisomerase I BT2827 SWALL:Q8A3X7 (EMBL:AE016937) (782 aa) fasta scores: E(): 0, 82.35% id in 782 aa, and to Porphyromonas gingivalis W83 DNA topoisomerase I TopA or PG0754 SWALL:AAQ65921 (EMBL:AE017174) (788 aa) fasta scores: E(): 3.5e-169, 59.82% id in 779 aa; putative DNA topoisomerase I 4987413 topA 3286482 topA Bacteroides fragilis NCTC 9343 putative DNA topoisomerase I YP_213781.1 4985068 D 272559 CDS YP_213782.1 60683638 3287304 4987585..4988568 1 NC_003228.3 no significant database matches; hypothetical protein 4988568 3287304 BF9343_4110 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213782.1 4987585 D 272559 CDS YP_213783.1 60683639 3289111 complement(4988754..4990547) 1 NC_003228.3 Similar to Lactococcus lactis arginyl-tRNA synthetase ArgS or ll2038 SWALL:SYR_LACLA (SWALL:Q9CE12) (564 aa) fasta scores: E(): 1.4e-31, 30.16% id in 600 aa, and to Bacteroides thetaiotaomicron arginyl-tRNA synthetase BT2829 SWALL:Q8A3X5 (EMBL:AE016937) (597 aa) fasta scores: E(): 7.6e-216, 92.46% id in 597 aa, and to Porphyromonas gingivalis W83 arginyl-tRNA synthetase ArgS or PG0267 SWALL:AAQ65487 (EMBL:AE017172) (597 aa) fasta scores: E(): 2.8e-165, 71.18% id in 597 aa; putative arginyl-tRNA synthetase 4990547 argS 3289111 argS Bacteroides fragilis NCTC 9343 putative arginyl-tRNA synthetase YP_213783.1 4988754 R 272559 CDS YP_213784.1 60683640 3289260 complement(4990635..4990907) 1 NC_003228.3 Similar to Bacillus stearothermophilus, Bacillus caldolyticus, and Bacillus caldotenax DNA-binding protein HU Hup or Hbs or HbsU SWALL:DBH_BACST (SWALL:P02346) (90 aa) fasta scores: E(): 8.2e-16, 60% id in 90 aa, and to Bacteroides thetaiotaomicron DNA-binding protein HU-beta BT2830 SWALL:Q8A3X4 (EMBL:AE016937) (90 aa) fasta scores: E(): 2e-20, 73.33% id in 90 aa; putative histone-like DNA-binding protein HU3 4990907 hup3 3289260 hup3 Bacteroides fragilis NCTC 9343 putative histone-like DNA-binding protein HU3 YP_213784.1 4990635 R 272559 CDS YP_213785.1 60683641 3287266 4991155..4991829 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron rhomboid family protein BT2831 SWALL:Q8A3X3 (EMBL:AE016937) (224 aa) fasta scores: E(): 9.8e-80, 84.37% id in 224 aa, and to Porphyromonas gingivalis W83 rhomboid family protein PG1404 SWALL:AAQ66462 (EMBL:AE017176) (238 aa) fasta scores: E(): 6.7e-46, 51.77% id in 226 aa; putative transmembrane rhomboid family protein 4991829 3287266 BF9343_4113 Bacteroides fragilis NCTC 9343 putative transmembrane rhomboid family protein YP_213785.1 4991155 D 272559 CDS YP_213786.1 60683642 3287305 4991810..4992709 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron rhomboid family protein BT2832 SWALL:Q8A3X2 (EMBL:AE016937) (300 aa) fasta scores: E(): 1.1e-95, 79.66% id in 300 aa, and to Porphyromonas gingivalis W83 rhomboid family protein PG1403 SWALL:AAQ66461 (EMBL:AE017176) (288 aa) fasta scores: E(): 3.8e-37, 38.88% id in 288 aa; putative transmembrane rhomboid family protein 4992709 3287305 BF9343_4114 Bacteroides fragilis NCTC 9343 putative transmembrane rhomboid family protein YP_213786.1 4991810 D 272559 CDS YP_213787.1 60683643 3287311 4992713..4993810 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2833 SWALL:Q8A3X1 (EMBL:AE016937) (361 aa) fasta scores: E(): 3e-92, 63.15% id in 361 aa; hypothetical protein 4993810 3287311 BF9343_4115 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213787.1 4992713 D 272559 CDS YP_213788.1 60683644 3287583 complement(4994266..4994589) 1 NC_003228.3 no significant database matches; hypothetical protein 4994589 3287583 BF9343_4116 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213788.1 4994266 R 272559 CDS YP_213789.1 60683645 3287592 4994622..4997645 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron protein-export membrane protein SecD/SecF BT2835 SWALL:Q8A3W9 (EMBL:AE016937) (1010 aa) fasta scores: E(): 0, 85.23% id in 1009 aa, and to Porphyromonas gingivalis W83 protein-export membrane protein SecD/protein-export membrane protein SecF SecDF or PG1762 SWALL:AAQ66763 (EMBL:AE017178) (944 aa) fasta scores: E(): 7.5e-154, 50.67% id in 967 aa, and to Chlamydophila caviae SecDF protein, putative cca00178 SWALL:Q824G8 (EMBL:AE016994) (1404 aa) fasta scores: E(): 2.1e-50, 33.72% id in 602 aa; putative protein-export transmembrane SecDF protein 4997645 3287592 BF9343_4117 Bacteroides fragilis NCTC 9343 putative protein-export transmembrane SecDF protein YP_213789.1 4994622 D 272559 CDS YP_213790.1 60683646 3289259 complement(4997946..4998236) 1 NC_003228.3 Similar to Bacillus stearothermophilus, Bacillus caldolyticus, and Bacillus caldotenax DNA-binding protein HU Hup or Hbs or HbsU SWALL:DBH_BACST (SWALL:P02346) (90 aa) fasta scores: E(): 2.2e-10, 48.23% id in 85 aa, and to Bacillus thuringiensis small DNA-binding protein PBT092 SWALL:Q8KIW0 (EMBL:AL731825) (92 aa) fasta scores: E(): 1.8e-11, 50.58% id in 85 aa, and to Oceanobacillus iheyensis non-specific DNA-binding protein OB1792 SWALL:Q8EQB2 (EMBL:AP004599) (90 aa) fasta scores: E(): 1.2e-10, 47.05% id in 85 aa; putative histone-like DNA-binding protein HU4 4998236 hup4 3289259 hup4 Bacteroides fragilis NCTC 9343 putative histone-like DNA-binding protein HU4 YP_213790.1 4997946 R 272559 CDS YP_213791.1 60683647 3287425 complement(4998277..5002800) 1 NC_003228.3 N-terminus is similar to Bacteroides thetaiotaomicron hypothetical protein BT1067 SWALL:AAO76174 (EMBL:AE016930) (608 aa) fasta scores: E(): 3.1e-09, 27% id in 511 aa; hypothetical protein 5002800 3287425 BF9343_4119 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213791.1 4998277 R 272559 CDS YP_213792.1 60683648 3287414 complement(5002837..5005968) 1 NC_003228.3 no significant database matches; hypothetical protein 5005968 3287414 BF9343_4120 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213792.1 5002837 R 272559 CDS YP_213793.1 60683649 3287336 complement(5006240..5007223) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1062 SWALL:AAO76169 (EMBL:AE016930) (317 aa) fasta scores: E(): 2.5e-11, 25.3% id in 324 aa, and limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT2657 SWALL:AAO77764 (EMBL:AE016936) (338 aa) fasta scores: E(): 0.00011, 28.07% id in 342 aa; hypothetical protein 5007223 3287336 BF9343_4121 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213793.1 5006240 R 272559 CDS YP_213794.1 60683650 3287340 complement(5007306..5008379) 1 NC_003228.3 no significant database matches; hypothetical protein 5008379 3287340 BF9343_4122 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213794.1 5007306 R 272559 CDS YP_213795.1 60683651 3287254 complement(5008459..5010174) 1 NC_003228.3 no significant database matches; hypothetical protein 5010174 3287254 BF9343_4123 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213795.1 5008459 R 272559 CDS YP_213796.1 60683652 3287249 complement(5010208..5010768) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1066 SWALL:Q8A8V1 (EMBL:AE016930) (189 aa) fasta scores: E(): 4.8e-18, 36.78% id in 193 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2130 SWALL:AAQ67085 (EMBL:AE017179) (193 aa) fasta scores: E(): 8.8e-18, 34.89% id in 192 aa; hypothetical protein 5010768 3287249 BF9343_4124 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213796.1 5010208 R 272559 CDS YP_213797.1 60683653 3287233 5010953..5011147 1 NC_003228.3 no significant database matches; hypothetical protein 5011147 3287233 BF9343_4125 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213797.1 5010953 D 272559 CDS YP_213798.1 60683654 3287278 5011150..5012037 1 NC_003228.3 Similar to Streptococcus mutans Msm operon regulatory protein MsmR or SMU.876 SWALL:MSMR_STRMU (SWALL:Q00753) (278 aa) fasta scores: E(): 0.0018, 22.71% id in 273 aa, and to Bacteroides thetaiotaomicron transcription regulator BT2320 SWALL:Q8A5B9 (EMBL:AE016935) (291 aa) fasta scores: E(): 1.1e-25, 33.21% id in 286 aa, and to Bacteroides thetaiotaomicron AraC family transcriptional regulator BT2889 SWALL:Q8A3R5 (EMBL:AE016937) (294 aa) fasta scores: E(): 1.3e-24, 30% id in 290 aa; putative AraC-family transcriptional regulatory protein 5012037 3287278 BF9343_4126 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulatory protein YP_213798.1 5011150 D 272559 CDS YP_213799.1 60683655 3287149 complement(5012284..5013525) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transposase BT2890 SWALL:Q8A3R4 (EMBL:AE016937) (397 aa) fasta scores: E(): 9.1e-45, 34.1% id in 387 aa, and to Bacteroides thetaiotaomicron transposase BT4015 SWALL:Q8A0K6 (EMBL:AE016943) (402 aa) fasta scores: E(): 2.6e-44, 36.65% id in 401 aa; putative bacteriophage integrase 5013525 3287149 BF9343_4127 Bacteroides fragilis NCTC 9343 putative bacteriophage integrase YP_213799.1 5012284 R 272559 CDS YP_213800.1 60683656 3287609 complement(5013555..5013788) 1 NC_003228.3 no significant database matches; hypothetical protein 5013788 3287609 BF9343_4128 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213800.1 5013555 R 272559 CDS YP_213801.1 60683657 3287832 5014489..5016339 1 NC_003228.3 Similar to Hydrogenobacter thermophilus 2-oxoglutarate ferredoxin oxidoreductase alpha subunit KorA SWALL:Q9AJM0 (EMBL:AB046568) (607 aa) fasta scores: E(): 1.6e-26, 30.32% id in 620 aa, and to Bacteroides thetaiotaomicron 2-oxoglutarate synthase subunit KorA BT2836 SWALL:Q8A3W8 (EMBL:AE016937) (616 aa) fasta scores: E(): 0, 89.44% id in 616 aa; putative 2-oxoglutarate ferredoxin oxidoreductase subunit 5016339 porA 3287832 porA Bacteroides fragilis NCTC 9343 putative 2-oxoglutarate ferredoxin oxidoreductase subunit YP_213801.1 5014489 D 272559 CDS YP_213802.1 60683658 3287820 5016343..5017353 1 NC_003228.3 Similar to Halobacterium sp. pyruvate ferredoxin oxidoreductase, subunit beta PorB or vng0473G SWALL:Q9HRZ6 (EMBL:AE005001) (289 aa) fasta scores: E(): 2e-35, 47.34% id in 207 aa, and to Bacteroides thetaiotaomicron 2-oxoglutarate synthase subunit KorB BT2837 SWALL:Q8A3W7 (EMBL:AE016937) (336 aa) fasta scores: E(): 1.5e-127, 94.64% id in 336 aa; putative 2-oxoglutarate synthase subunit 5017353 porB 3287820 porB Bacteroides fragilis NCTC 9343 putative 2-oxoglutarate synthase subunit YP_213802.1 5016343 D 272559 CDS YP_213803.1 60683659 3289304 complement(5017592..5019193) 1 NC_003228.3 no significant database matches; putative transmembrane protein 5019193 3289304 BF9343_4131 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213803.1 5017592 R 272559 CDS YP_213804.1 60683660 3285526 complement(5019638..5020399) 1 NC_003228.3 Similar to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ or B3449 SWALL:UGPQ_ECOLI (SWALL:P10908) (247 aa) fasta scores: E(): 4.4e-13, 31.51% id in 238 aa, and to Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase UgpQ or atu4212 or agr_l_1291 SWALL:Q8U887 (EMBL:AE009350) (248 aa) fasta scores: E(): 2.1e-22, 36.55% id in 238 aa; putative glycerophosphoryl diester phosphodiesterase 5020399 ugpQ 3285526 ugpQ Bacteroides fragilis NCTC 9343 putative glycerophosphoryl diester phosphodiesterase YP_213804.1 5019638 R 272559 CDS YP_213805.1 60683661 3289301 complement(5020633..5021286) 1 NC_003228.3 Similar to Lactobacillus plantarum uracil phosphoribosyltransferase Upp or LP_2374 SWALL:UPP_LACPL (SWALL:Q9RE01) (209 aa) fasta scores: E(): 1.1e-14, 38.29% id in 188 aa, and to Bacteroides thetaiotaomicron uracil phosphoribosyltransferase BT2791 SWALL:AAO77897 (EMBL:AE016937) (217 aa) fasta scores: E(): 1.3e-74, 89.86% id in 217 aa; putative uracil phosphoribosyltransferase 5021286 3289301 BF9343_4133 Bacteroides fragilis NCTC 9343 putative uracil phosphoribosyltransferase YP_213805.1 5020633 R 272559 CDS YP_213806.1 60683662 3289236 5021551..5023158 1 NC_003228.3 Similar to Anaerobiospirillum succiniciproducens phosphoenolpyruvate carboxykinase [ATP] (pep carboxykinase)(phosphoenolpyruvate carboxylase) PckA SWALL:PPCK_ANASU (SWALL:O09460) (532 aa) fasta scores: E(): 3.8e-168, 78.67% id in 530 aa, and to Bacteroides thetaiotaomicron phosphoenolpyruvate carboxykinase [ATP] (pep carboxykinase)(phosphoenolpyruvate carboxylase) pcka or BT2790 SWALL:AAO77896 (EMBL:AE016937) (535 aa) fasta scores: E(): 9.3e-194, 89.15% id in 535 aa; putative phosphoenolpyruvate carboxykinase 5023158 pckA 3289236 pckA Bacteroides fragilis NCTC 9343 putative phosphoenolpyruvate carboxykinase YP_213806.1 5021551 D 272559 CDS YP_213807.1 60683663 3286344 complement(5023459..5023647) 1 NC_003228.3 no significant database matches; hypothetical protein 5023647 3286344 BF9343_4135 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213807.1 5023459 R 272559 CDS YP_213808.1 60683664 3286352 5024440..5027655 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 RagA protein or PG0185 SWALL:AAQ65420 (EMBL:AE017172) (1017 aa) fasta scores: E(): 6.5e-42, 26.82% id in 1081 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:Q8A3Z9 (EMBL:AE016937) (1083 aa) fasta scores: E(): 1.6e-182, 46.83% id in 1059 aa; putative outer membrane protein 5027655 3286352 BF9343_4136 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213808.1 5024440 D 272559 CDS YP_213809.1 60683665 3286165 5027668..5029668 1 NC_003228.3 C-terminus is similar to previously sequenced Bacteroides fragilis hypothetical protein (fragment) SWALL:Q84IE3 (EMBL:AB102772) (218 aa) fasta scores: E(): 3.8e-38, 50% id in 220 aa, and to entire Bacteroides thetaiotaomicron hypothetical protein BT2806 SWALL:Q8A3Z8 (EMBL:AE016937) (666 aa) fasta scores: E(): 2.9e-100, 44.14% id in 675 aa; hypothetical protein 5029668 3286165 BF9343_4137 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213809.1 5027668 D 272559 CDS YP_213810.1 60683666 3285255 5030783..5033881 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron SusC, outer membrane protein involved in starch binding or BT3702 SWALL:Q8A1G1 (EMBL:AE016941) (1003 aa) fasta scores: E(): 8.4e-37, 26.56% id in 1073 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2894 SWALL:Q8A3R0 (EMBL:AE016937) (1018 aa) fasta scores: E(): 1.2e-85, 32.37% id in 1047 aa; putative outer membrane protein 5033881 3285255 BF9343_4138 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213810.1 5030783 D 272559 CDS YP_213811.1 60683667 3288077 5033887..5035764 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2893 SWALL:AAO77999 (EMBL:AE016937) (624 aa) fasta scores: E(): 1e-09, 25.55% id in 681 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT0030 SWALL:AAO75137 (EMBL:AE016926) (609 aa) fasta scores: E(): 7.2e-08, 26.31% id in 342 aa; putative outer membrane protein 5035764 3288077 BF9343_4139 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213811.1 5033887 D 272559 CDS YP_213812.1 60683668 3288127 5035807..5036286 1 NC_003228.3 no significant database matches; hypothetical protein 5036286 3288127 BF9343_4140 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213812.1 5035807 D 272559 CDS YP_213813.1 60683669 3288075 5036515..5038332 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT4251 SWALL:AAO79356 (EMBL:AE016944) (615 aa) fasta scores: E(): 2.3e-79, 36.42% id in 615 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT3160 SWALL:AAO78266 (EMBL:AE016939) (568 aa) fasta scores: E(): 7.7e-67, 36.32% id in 523 aa; hypothetical protein 5038332 3288075 BF9343_4141 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213813.1 5036515 D 272559 CDS YP_213814.1 60683670 3288147 5038345..5039472 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3180 SWALL:Q8A2X5 (EMBL:AE016939) (376 aa) fasta scores: E(): 4.1e-123, 76.33% id in 376 aa, and to Shewanella oneidensis conserved hypothetical protein so3504 SWALL:Q8EBK9 (EMBL:AE015787) (395 aa) fasta scores: E(): 5.8e-25, 29.48% id in 390 aa, and to Anabaena sp. hypothetical protein ALL1887 SWALL:Q8YVT7 (EMBL:AP003587) (375 aa) fasta scores: E(): 4e-21, 28.1% id in 395 aa; putative transmembrane protein 5039472 3288147 BF9343_4142 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213814.1 5038345 D 272559 CDS YP_213815.1 60683671 3289064 complement(5039774..5040079) 1 NC_003228.3 no significant database matches; hypothetical protein 5040079 3289064 BF9343_4143 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213815.1 5039774 R 272559 CDS YP_213816.1 60683672 3289068 5040117..5043164 1 NC_003228.3 no significant database matches; hypothetical protein 5043164 3289068 BF9343_4144 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213816.1 5040117 D 272559 CDS YP_213817.1 60683673 3287295 5043254..5045743 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4682 SWALL:Q89YP9 (EMBL:AE016946) (812 aa) fasta scores: E(): 0, 78.28% id in 829 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT3173 SWALL:Q8A2Y2 (EMBL:AE016939) (815 aa) fasta scores: E(): 0, 73.32% id in 821 aa, and to Xanthomonas campestris hypothetical protein Xcc1756 SWALL:Q8P9U1 (EMBL:AE012277) (790 aa) fasta scores: E(): 2e-87, 37.31% id in 788 aa; hypothetical protein 5045743 3287295 BF9343_4145 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213817.1 5043254 D 272559 CDS YP_213818.1 60683674 3289331 5046824..5050084 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrG SWALL:Q8VTA9 (EMBL:AF329100) (1137 aa) fasta scores: E(): 7.4e-59, 29.52% id in 1128 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT2805 SWALL:AAO77911 (EMBL:AE016937) (1083 aa) fasta scores: E(): 9.3e-186, 46.81% id in 1051 aa; putative outer membrane protein 5050084 3289331 BF9343_4146 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213818.1 5046824 D 272559 CDS YP_213819.1 60683675 3288876 5050099..5052126 1 NC_003228.3 Similar to C-terminus of previously sequenced Bacteroides fragilis hypothetical protein (fragment) SWALL:Q84IE3 (EMBL:AB102772) (218 aa) fasta scores: E(): 3.4e-55, 65.47% id in 223 aa, and to entire Bacteroides thetaiotaomicron hypothetical protein BT2806 SWALL:Q8A3Z8 (EMBL:AE016937) (666 aa) fasta scores: E(): 1.6e-71, 42.64% id in 680 aa; hypothetical protein 5052126 3288876 BF9343_4147 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213819.1 5050099 D 272559 CDS YP_213820.1 60683676 3285512 complement(5052358..5054157) 1 NC_003228.3 Similar to Escherichia coli O6, Escherichia coli O127:H6, Escherichia coli O157:H7, and Shigella flexneri GTP-binding protein TypA/BipA TypA or BipA or C4820 or z5407 or ECS4793 or SF3941 or s3805 SWALL:TYPA_ECOL6 (SWALL:Q9EXN7) (607 aa) fasta scores: E(): 1.1e-106, 50.66% id in 602 aa, and to Bacteroides thetaiotaomicron GTP-binding elongation factor family protein TypA/BipA BT2787 SWALL:Q8A417 (EMBL:AE016937) (599 aa) fasta scores: E(): 1.8e-198, 92.48% id in 599 aa, and to Porphyromonas gingivalis W83 GTP-binding protein TypA or PG0615 SWALL:AAQ65799 (EMBL:AE017174) (599 aa) fasta scores: E(): 1.6e-161, 75.79% id in 599 aa; putative GTP-binding elongation factor family protein TypA/BipA 5054157 typA 3285512 typA Bacteroides fragilis NCTC 9343 putative GTP-binding elongation factor family protein TypA/BipA YP_213820.1 5052358 R 272559 CDS YP_213821.1 60683677 3288903 5054313..5054582 1 NC_003228.3 Similar to Bacillus stearothermophilus 30S ribosomal protein S15 RpsO SWALL:RS15_BACST (SWALL:P05766) (88 aa) fasta scores: E(): 1e-12, 44.82% id in 87 aa, and to Bacteroides thetaiotaomicron 30S ribosomal protein S15 BT2786 SWALL:Q8A418 (EMBL:AE016937) (89 aa) fasta scores: E(): 3e-28, 87.64% id in 89 aa, and to Porphyromonas gingivalis W83 ribosomal protein S15 RpsO or PG1758 SWALL:AAQ66759 (EMBL:AE017178) (89 aa) fasta scores: E(): 8.8e-22, 68.53% id in 89 aa; putative 30S ribosomal protein S15 5054582 rpsO 3288903 rpsO Bacteroides fragilis NCTC 9343 putative 30S ribosomal protein S15 YP_213821.1 5054313 D 272559 CDS YP_213822.1 60683678 3288113 5054741..5055316 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transcriptional regulator BT2783 SWALL:Q8A421 (EMBL:AE016937) (191 aa) fasta scores: E(): 2.7e-63, 92.14% id in 191 aa, and to Methanobacterium thermoautotrophicum epoxidase MTH659 SWALL:O26755 (EMBL:AE000846) (190 aa) fasta scores: E(): 1.4e-34, 57.29% id in 185 aa, and to Methanosarcina mazei transcriptional regulator, MerR family MM2394 SWALL:Q8PUE1 (EMBL:AE013482) (192 aa) fasta scores: E(): 3.1e-33, 52.08% id in 192 aa; putative transcriptional regulator 5055316 3288113 BF9343_4150 Bacteroides fragilis NCTC 9343 putative transcriptional regulator YP_213822.1 5054741 D 272559 CDS YP_213823.1 60683679 3287219 5055353..5057002 1 NC_003228.3 Similar to Bacillus subtilis YngI SWALL:Q9R9I5 (EMBL:AF184956) (549 aa) fasta scores: E(): 5.9e-111, 50.55% id in 540 aa, and to Bacteroides thetaiotaomicron long-chain-fatty-acid--CoA ligase BT2782 SWALL:Q8A422 (EMBL:AE016937) (549 aa) fasta scores: E(): 1.5e-212, 92.71% id in 549 aa; putative long-chain-fatty-acid--CoA ligase 5057002 3287219 BF9343_4151 Bacteroides fragilis NCTC 9343 putative long-chain-fatty-acid--CoA ligase YP_213823.1 5055353 D 272559 CDS YP_213824.1 60683680 3287485 complement(5057058..5058626) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase BT1447 SWALL:Q8A7S7 (EMBL:AE016931) (785 aa) fasta scores: E(): 2.7e-73, 41.82% id in 636 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT1183 SWALL:Q8A8I4 (EMBL:AE016930) (1336 aa) fasta scores: E(): 1.2e-50, 32.63% id in 521 aa; putative two-component sensor histidine kinase with PAS domain 5058626 3287485 BF9343_4152 Bacteroides fragilis NCTC 9343 putative two-component sensor histidine kinase with PAS domain YP_213824.1 5057058 R 272559 CDS YP_213825.1 60683681 3288039 5058813..5060231 1 NC_003228.3 Similar to Nicotiana tabacum adenosylhomocysteinase SahH SWALL:SAHH_TOBAC (SWALL:P50248) (485 aa) fasta scores: E(): 3.9e-116, 65.89% id in 472 aa, and to Bacteroides thetaiotaomicron adenosylhomocysteinase AhcY or BT2797 SWALL:SAHH_BACTN (SWALL:Q8A407) (476 aa) fasta scores: E(): 1.1e-175, 96.61% id in 472 aa, and to Chlorobium tepidum adenosylhomocysteinase AhcY or SahH or CT0721 SWALL:SAHH_CHLTE (SWALL:Q8KEG8) (471 aa) fasta scores: E(): 1.2e-137, 76.27% id in 472 aa; putative adenosylhomocysteinase 5060231 sahH 3288039 sahH Bacteroides fragilis NCTC 9343 putative adenosylhomocysteinase YP_213825.1 5058813 D 272559 CDS YP_213826.1 60683682 3289290 5060353..5062851 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2796 SWALL:AAO77902 (EMBL:AE016937) (843 aa) fasta scores: E(): 0, 77.49% id in 831 aa, and to Chlorobium tepidum hypothetical protein CT2205 SWALL:Q8KAF7 (EMBL:AE012966) (793 aa) fasta scores: E(): 1.1e-09, 25.82% id in 848 aa; hypothetical protein 5062851 3289290 BF9343_4154 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213826.1 5060353 D 272559 CDS YP_213827.1 60683683 3289312 5063161..5063412 1 NC_003228.3 no significant database matches; hypothetical protein 5063412 3289312 BF9343_4155 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213827.1 5063161 D 272559 CDS YP_213828.1 60683684 3289293 complement(5063781..5065322) 1 NC_003228.3 Similar to Klebsiella aerogenes arylsulfatase precursor AtsA SWALL:ARS_KLEAE (SWALL:P20713) (464 aa) fasta scores: E(): 1.9e-12, 27.27% id in 473 aa, and to Bacteroides thetaiotaomicron arylsulfatase precursor BT1636 SWALL:Q8A789 (EMBL:AE016932) (509 aa) fasta scores: E(): 9.2e-176, 79.84% id in 511 aa; putative arylsulfatase 5065322 3289293 BF9343_4156 Bacteroides fragilis NCTC 9343 putative arylsulfatase YP_213828.1 5063781 R 272559 CDS YP_213829.1 60683685 3287542 complement(5065479..5067428) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT1620 SWALL:Q8A7A5 (EMBL:AE016932) (618 aa) fasta scores: E(): 1.1e-67, 37.61% id in 654 aa, and to Bacteroides thetaiotaomicron hypothetical protein BT4358 SWALL:Q89ZL9 (EMBL:AE016945) (628 aa) fasta scores: E(): 1.7e-60, 49.01% id in 659 aa; hypothetical protein 5067428 3287542 BF9343_4157 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213829.1 5065479 R 272559 CDS YP_213830.1 60683686 3289055 complement(5071011..5071931) 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis fragilis regulatory region FrrF SWALL:Q8VTB0 (EMBL:AF329100) (336 aa) fasta scores: E(): 3.4e-09, 25% id in 276 aa, and to Bacteroides thetaiotaomicron putative anti-sigma factor BT4248 SWALL:Q89ZX3 (EMBL:AE016944) (217 aa) fasta scores: E(): 3e-33, 41.26% id in 206 aa; putative anti-sigma factor 5071931 3289055 BF9343_4159 Bacteroides fragilis NCTC 9343 putative anti-sigma factor YP_213830.1 5071011 R 272559 CDS YP_213831.1 60683687 3289059 5072121..5072672 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis RpoE SWALL:Q8VTB1 (EMBL:AF329100) (187 aa) fasta scores: E(): 1.5e-17, 37.83% id in 185 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT4250 SWALL:Q89ZX1 (EMBL:AE016944) (181 aa) fasta scores: E(): 6.8e-34, 51.38% id in 181 aa; putative ECF-type RNA polymerase 5072672 3289059 BF9343_4160 Bacteroides fragilis NCTC 9343 putative ECF-type RNA polymerase YP_213831.1 5072121 D 272559 CDS YP_213832.1 60683688 3289065 complement(5072916..5074154) 1 NC_003228.3 Similar to Escherichia coli lipoprotein releasing system transmembrane protein LolE or B1118 SWALL:LOLE_ECOLI (SWALL:P75958) (413 aa) fasta scores: E(): 8.1e-13, 23.44% id in 418 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2838 SWALL:Q8A3W6 (EMBL:AE016937) (408 aa) fasta scores: E(): 1.2e-122, 78.53% id in 410 aa, and to Porphyromonas gingivalis W83 membrane protein, putative PG0922 SWALL:AAQ66057 (EMBL:AE017175) (407 aa) fasta scores: E(): 4.3e-47, 35.81% id in 416 aa; putative lipoprotein releasing system transmembrane protein 5074154 3289065 BF9343_4162 Bacteroides fragilis NCTC 9343 putative lipoprotein releasing system transmembrane protein YP_213832.1 5072916 R 272559 CDS YP_213833.1 60683689 3289056 complement(5074151..5074483) 1 NC_003228.3 Similar to Bacillus subtilis ribosome-binding factor A RbfA or BSU16650 SWALL:RBFA_BACSU (SWALL:P32731) (117 aa) fasta scores: E(): 1.9e-08, 36.69% id in 109 aa, and to Bacteroides thetaiotaomicron ribosome-binding factor A BT2839 SWALL:AAO77945 (EMBL:AE016937) (110 aa) fasta scores: E(): 3.5e-37, 94.54% id in 110 aa; putative ribosome-binding factor A 5074483 3289056 BF9343_4163 Bacteroides fragilis NCTC 9343 putative ribosome-binding factor A YP_213833.1 5074151 R 272559 CDS YP_213834.1 60683690 3289090 complement(5074520..5074780) 1 NC_003228.3 no significant database matches; putative transmembrane protein 5074780 3289090 BF9343_4164 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213834.1 5074520 R 272559 CDS YP_213835.1 60683691 3289060 complement(5074804..5075442) 1 NC_003228.3 Similar to Streptomyces hygroscopicus GdmG gdmG SWALL:Q84G14 (EMBL:AY179507) (218 aa) fasta scores: E(): 4.8e-20, 36.69% id in 218 aa, and to Bacteroides thetaiotaomicron O-methyltransferase BT2840 SWALL:Q8A3W4 (EMBL:AE016937) (212 aa) fasta scores: E(): 5.3e-73, 84.9% id in 212 aa; putative O-methyltransferase 5075442 3289060 BF9343_4165 Bacteroides fragilis NCTC 9343 putative O-methyltransferase YP_213835.1 5074804 R 272559 CDS YP_213836.1 60683692 3287978 complement(5075451..5076908) 1 NC_003228.3 Similar to Borrelia burgdorferi pyruvate kinase Pyk or BB0348 SWALL:KPYK_BORBU (SWALL:O51323) (477 aa) fasta scores: E(): 1e-74, 47.07% id in 478 aa, and to Bacteroides thetaiotaomicron pyruvate kinase BT2841 SWALL:Q8A3W3 (EMBL:AE016937) (485 aa) fasta scores: E(): 1.9e-168, 94.22% id in 485 aa; putative pyruvate kinase 5076908 pyk 3287978 pyk Bacteroides fragilis NCTC 9343 putative pyruvate kinase YP_213836.1 5075451 R 272559 CDS YP_213837.1 60683693 3288980 complement(5076936..5077355) 1 NC_003228.3 Similar to Helicobacter pylori 3-dehydroquinate dehydratase AroQ or hp1038 SWALL:AROQ_HELPY (SWALL:Q48255) (167 aa) fasta scores: E(): 3e-21, 50.35% id in 143 aa, and to Bacteroides thetaiotaomicron 3-dehydroquinate dehydratase BT2842 SWALL:Q8A3W2 (EMBL:AE016937) (140 aa) fasta scores: E(): 4.8e-44, 89.78% id in 137 aa, and to Porphyromonas gingivalis W83 3-dehydroquinate dehydratase, type II AroQ or PG1731 SWALL:AAQ66738 (EMBL:AE017178) (141 aa) fasta scores: E(): 6.6e-26, 59.42% id in 138 aa; putative type II 3-dehydroquinate dehydratase 5077355 aroQ 3288980 aroQ Bacteroides fragilis NCTC 9343 putative type II 3-dehydroquinate dehydratase YP_213837.1 5076936 R 272559 CDS YP_213838.1 60683694 3287323 5077429..5078382 1 NC_003228.3 Similar to Chlorobium tepidum tyrosine recombinase XerD or CT0602 SWALL:XERD_CHLTE (SWALL:Q8KET0) (304 aa) fasta scores: E(): 1e-41, 45.23% id in 294 aa, and to Bacteroides thetaiotaomicron integrase BT2843 SWALL:Q8A3W1 (EMBL:AE016937) (319 aa) fasta scores: E(): 2.9e-101, 84.44% id in 315 aa; putative tyrosine recombinase 5078382 xerD 3287323 xerD Bacteroides fragilis NCTC 9343 putative tyrosine recombinase YP_213838.1 5077429 D 272559 CDS YP_213839.1 60683695 3289086 5078605..5080284 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2844 SWALL:Q8A3W0 (EMBL:AE016937) (553 aa) fasta scores: E(): 1.3e-162, 84.08% id in 553 aa, and C-terminus is similar to Porphyromonas gingivalis W83 TPR domain protein PG1028 SWALL:AAQ66147 (EMBL:AE017175) (448 aa) fasta scores: E(): 3.5e-81, 55.77% id in 450 aa. Possible alternative start site at codon 7; hypothetical protein 5080284 3289086 BF9343_4169 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213839.1 5078605 D 272559 CDS YP_213840.1 60683696 3289080 5080396..5081466 1 NC_003228.3 Similar to Brevibacillus choshinensis thiol-disulfide oxidoreductase SWALL:Q7WS25 (EMBL:AB084919) (177 aa) fasta scores: E(): 5.2e-05, 28.66% id in 150 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2845 SWALL:Q8A3V9 (EMBL:AE016937) (371 aa) fasta scores: E(): 7.1e-45, 51.2% id in 373 aa; possible thiol-disulfide oxidoreductase 5081466 3289080 BF9343_4170 Bacteroides fragilis NCTC 9343 possible thiol-disulfide oxidoreductase YP_213840.1 5080396 D 272559 CDS YP_213841.1 60683697 3288957 5081500..5083038 1 NC_003228.3 Similar to Haemophilus influenzae competence protein ComM or hi1117 SWALL:COMM_HAEIN (SWALL:P45049) (509 aa) fasta scores: E(): 1.1e-69, 44.03% id in 511 aa, and to Bacteroides thetaiotaomicron magnesium chelatase, subunit ChlI BT2846 SWALL:Q8A3V8 (EMBL:AE016937) (512 aa) fasta scores: E(): 8.8e-158, 85.35% id in 512 aa, and to Porphyromonas gingivalis W83 magnesium chelatase, subunit D/I family PG1768 SWALL:AAQ66769 (EMBL:AE017178) (513 aa) fasta scores: E(): 1.5e-127, 68.23% id in 510 aa; hypothetical protein 5083038 3288957 BF9343_4171 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213841.1 5081500 D 272559 CDS YP_213842.1 60683698 3289084 5083058..5084740 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2847 SWALL:Q8A3V7 (EMBL:AE016937) (507 aa) fasta scores: E(): 4.4e-34, 46% id in 526 aa; hypothetical protein 5084740 3289084 BF9343_4172 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213842.1 5083058 D 272559 CDS YP_213843.1 60683699 3289092 5084926..5086113 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2848 SWALL:Q8A3V6 (EMBL:AE016937) (402 aa) fasta scores: E(): 7.8e-110, 68.34% id in 398 aa; hypothetical protein 5086113 3289092 BF9343_4173 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213843.1 5084926 D 272559 CDS YP_213844.1 60683700 3289088 complement(5086229..5088262) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT2899 SWALL:Q8A3Q5 (EMBL:AE016938) (677 aa) fasta scores: E(): 6.3e-217, 71.04% id in 677 aa; hypothetical protein 5088262 3289088 BF9343_4174 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213844.1 5086229 R 272559 CDS YP_213845.1 60683701 3289108 complement(5088415..5092404) 1 NC_003228.3 Similar to Porphyromonas gingivalis regulator of gingipain and black pigmentation GppX SWALL:Q7WUA4 (EMBL:AB109632) (961 aa) fasta scores: E(): 8.8e-23, 29.57% id in 568 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT2923 SWALL:Q8A3N1 (EMBL:AE016938) (1338 aa) fasta scores: E(): 0, 69.95% id in 1338 aa; putative two-component system sensor kinase/response regulator fusion protein 5092404 3289108 BF9343_4175 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_213845.1 5088415 R 272559 CDS YP_213846.1 60683702 3288970 complement(5092506..5093591) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative heme biosynthesis protein BT0510 SWALL:Q8AAF5 (EMBL:AE016928) (366 aa) fasta scores: E(): 3e-87, 55.55% id in 351 aa, and to Clostridium acetobutylicum MoaA/NirJ family Fe-S oxidoreductase CAC2795 SWALL:Q97FE5 (EMBL:AE007777) (335 aa) fasta scores: E(): 2.1e-17, 25.07% id in 323 aa, and to Pyrobaculum aerophilum metallo-cofactor biosynthesis protein pae0596 SWALL:Q8ZYW0 (EMBL:AE009774) (372 aa) fasta scores: E(): 9.3e-16, 26.28% id in 350 aa. This CDS overlaps 9 nt with the upstream CDS.; putative radical SAM-family protein 5093591 3288970 BF9343_4176 Bacteroides fragilis NCTC 9343 putative radical SAM-family protein YP_213846.1 5092506 R 272559 CDS YP_213847.1 60683703 3289103 complement(5093581..5094069) 1 NC_003228.3 no significant database hits. This CDS overlaps 9 nt with the downstream CDS; hypothetical protein 5094069 3289103 BF9343_4177 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213847.1 5093581 R 272559 CDS YP_213848.1 60683704 3288965 complement(5094169..5096229) 1 NC_003228.3 Similar to Pseudomonas mendocina pimeloyl-CoA synthetase SWALL:Q9ZER2 (EMBL:AJ012480) (711 aa) fasta scores: E(): 5.5e-49, 30.64% id in 718 aa, and to Bacteroides thetaiotaomicron acetyl-CoA synthetase BT2924 SWALL:Q8A3N0 (EMBL:AE016938) (686 aa) fasta scores: E(): 0, 90.37% id in 686 aa; putative CoA-binding protein 5096229 3288965 BF9343_4178 Bacteroides fragilis NCTC 9343 putative CoA-binding protein YP_213848.1 5094169 R 272559 CDS YP_213849.1 60683705 3289124 complement(5096419..5097813) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT0668 SWALL:Q8A9Z7 (EMBL:AE016928) (649 aa) fasta scores: E(): 1.6e-16, 29.63% id in 415 aa; hypothetical protein 5097813 3289124 BF9343_4179 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213849.1 5096419 R 272559 CDS YP_213850.1 60683706 3289106 complement(5098745..5099680) 1 NC_003228.3 Limited similarity to Bacteroides thetaiotaomicron hypothetical protein BT4048 SWALL:AAO79153 (EMBL:AE016943) (373 aa) fasta scores: E(): 0.00016, 30.3% id in 99 aa; putative transmembrane anchored hypothetical protein 5099680 3289106 BF9343_4180 Bacteroides fragilis NCTC 9343 putative transmembrane anchored hypothetical protein YP_213850.1 5098745 R 272559 CDS YP_213851.1 60683707 3288989 5099756..5100109 1 NC_003228.3 no significant database matches; hypothetical protein 5100109 3288989 BF9343_4181 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213851.1 5099756 D 272559 CDS YP_213852.1 60683708 3289119 5100126..5101214 1 NC_003228.3 no significant database matches; hypothetical protein 5101214 3289119 BF9343_4182 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213852.1 5100126 D 272559 CDS YP_213853.1 60683709 3289247 5101378..5103417 1 NC_003228.3 Similar to Escherichia coli methionyl-tRNA synthetase MetG or B2114 SWALL:SYM_ECOLI (SWALL:P00959) (676 aa) fasta scores: E(): 2.1e-74, 35.12% id in 689 aa, and to Bacteroides thetaiotaomicron methionyl-tRNA synthetase BT2933 SWALL:AAO78039 (EMBL:AE016938) (679 aa) fasta scores: E(): 0, 94.55% id in 679 aa, and to Methanopyrus kandleri methionyl-tRNA synthetase MetG or mk0850 SWALL:SYM_METKA (SWALL:Q8TX28) (668 aa) fasta scores: E(): 1.6e-100, 39.97% id in 683 aa; putative methionyl-tRNA synthetase 5103417 metG 3289247 metG Bacteroides fragilis NCTC 9343 putative methionyl-tRNA synthetase YP_213853.1 5101378 D 272559 CDS YP_213854.1 60683710 3289128 5103508..5104953 1 NC_003228.3 Similar to Escherichia coli O-antigen repeat unit transporter Wzx SWALL:Q9RP63 (EMBL:AF172324) (473 aa) fasta scores: E(): 8.4e-40, 27.96% id in 472 aa, and to Bacteroides thetaiotaomicron putative transmembrane transport protein, putative lipopolysaccharide biosynthesis protein BT2934 SWALL:Q8A3M0 (EMBL:AE016938) (482 aa) fasta scores: E(): 4.7e-108, 54.41% id in 476 aa, and to Bacteroides thetaiotaomicron putative lipopolysaccharide biosynthesis protein BT1717 SWALL:Q8A708 (EMBL:AE016933) (494 aa) fasta scores: E(): 1.9e-47, 31.94% id in 479 aa; putative O-antigen repeat unit transporter 5104953 3289128 BF9343_4184 Bacteroides fragilis NCTC 9343 putative O-antigen repeat unit transporter YP_213854.1 5103508 D 272559 CDS YP_213855.1 60683711 3289107 5104957..5106144 1 NC_003228.3 Similar to Yersinia enterocolitica LPS biosynthesis WbcM protein SWALL:Q56916 (EMBL:Z47767) (358 aa) fasta scores: E(): 2.8e-10, 27.47% id in 222 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase hi1698 BT1352 SWALL:AAO76459 (EMBL:AE016931) (389 aa) fasta scores: E(): 7.6e-24, 28.77% id in 351 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1180 SWALL:AAO76287 (EMBL:AE016930) (384 aa) fasta scores: E(): 1.4e-15, 27.92% id in 333 aa; putative glycosyltransferase 5106144 3289107 BF9343_4185 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_213855.1 5104957 D 272559 CDS YP_213856.1 60683712 3289121 5106154..5107164 1 NC_003228.3 Similar to Methylobacillus sp. 12S exopolysaccharide biosynthesis protein EpsR SWALL:BAC55146 (EMBL:AB062506) (312 aa) fasta scores: E(): 3.6e-05, 21.51% id in 237 aa; putative exopolysaccharide biosynthesis protein 5107164 3289121 BF9343_4186 Bacteroides fragilis NCTC 9343 putative exopolysaccharide biosynthesis protein YP_213856.1 5106154 D 272559 CDS YP_213857.1 60683713 3289110 5107164..5108363 1 NC_003228.3 Similar to Shigella dysenteriae galactosyltransferase RfpB SWALL:Q53452 (EMBL:S73325) (377 aa) fasta scores: E(): 2.6e-07, 25.11% id in 223 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT2938 SWALL:AAO78044 (EMBL:AE016938) (408 aa) fasta scores: E(): 4e-125, 75.43% id in 399 aa, and to Clostridium perfringens probable hexosyltransferase CPE0499 SWALL:Q8XN39 (EMBL:AP003187) (375 aa) fasta scores: E(): 5.4e-14, 27.77% id in 252 aa; putative glycosyltransferase 5108363 3289110 BF9343_4187 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_213857.1 5107164 D 272559 CDS YP_213858.1 60683714 3288986 5108432..5109079 1 NC_003228.3 no significant database matches; putative transmembrane protein 5109079 3288986 BF9343_4188 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213858.1 5108432 D 272559 CDS YP_213859.1 60683715 3289100 complement(5109131..5110261) 1 NC_003228.3 Similar to Salmonella typhimurium UDP-N-acetylglucosamine 2-epimerase WecB or RffE or STM3920 or STMd1.70 SWALL:WECB_SALTY (SWALL:Q9L6R5) (376 aa) fasta scores: E(): 2.4e-85, 61.29% id in 372 aa, and to Bacteroides thetaiotaomicron putative UDP-N-acetylglucosamine 2-epimerase BT2944 SWALL:AAO78050 (EMBL:AE016938) (376 aa) fasta scores: E(): 1.8e-125, 88.77% id in 374 aa, and to Acinetobacter lwoffii putative UDP-N-acetylglucosamine 2-epimerase WeeA SWALL:Q9RMD6 (EMBL:AJ243431) (376 aa) fasta scores: E(): 2.6e-86, 60.9% id in 376 aa; putative UDP-N-acetylglucosamine 2-epimerase 5110261 3289100 BF9343_4189 Bacteroides fragilis NCTC 9343 putative UDP-N-acetylglucosamine 2-epimerase YP_213859.1 5109131 R 272559 CDS YP_213860.1 60683716 3289116 complement(5110316..5111518) 1 NC_003228.3 Similar to Escherichia coli UDP-N-acetyl-D-mannosamine dehydrogenase WecC or RffD or b3787 SWALL:WECC_ECOLI (SWALL:P27829) (420 aa) fasta scores: E(): 2.6e-75, 54.56% id in 394 aa, and to Bacteroides thetaiotaomicron UDP-N-acetyl-D-mannosamine dehydrogenase BT2945 SWALL:AAO78051 (EMBL:AE016938) (400 aa) fasta scores: E(): 1.3e-139, 89% id in 400 aa, and to Bacteroides fragilis UDP-ManNAc dehydrogenase MnaB SWALL:Q9RGJ9 (EMBL:AF125164) (408 aa) fasta scores: E(): 7.1e-101, 65.65% id in 396 aa; putative UDP-N-acetyl-D-mannosamine dehydrogenase 5111518 3289116 BF9343_4190 Bacteroides fragilis NCTC 9343 putative UDP-N-acetyl-D-mannosamine dehydrogenase YP_213860.1 5110316 R 272559 CDS YP_213861.1 60683717 3289134 5111623..5112888 1 NC_003228.3 Similar to Vibrio cholerae O37 glysosyl-transferase SWALL:Q8L354 (EMBL:AF390573) (409 aa) fasta scores: E(): 3.5e-21, 24.1% id in 419 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT2946 SWALL:Q8A3K8 (EMBL:AE016938) (421 aa) fasta scores: E(): 7.5e-143, 80.99% id in 421 aa, and to Anabaena sp. hypothetical protein ALL4426 SWALL:Q8YNY3 (EMBL:AP003596) (417 aa) fasta scores: E(): 3.8e-43, 34.98% id in 423 aa; putative glycosyltransferase 5112888 3289134 BF9343_4191 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_213861.1 5111623 D 272559 CDS YP_213862.1 60683718 3288968 5112881..5113654 1 NC_003228.3 Similar to Methanosarcina mazei glycosyltransferase involved in cell wall biogenesis MM0653 SWALL:Q8PZ41 (EMBL:AE013290) (248 aa) fasta scores: E(): 1.6e-22, 32.52% id in 246 aa, and to Bacteroides thetaiotaomicron putative glycosyltransferase BT2947 SWALL:AAO78053 (EMBL:AE016938) (251 aa) fasta scores: E(): 8.1e-83, 81.14% id in 244 aa, and to Helicobacter pylori J99 putative jhp0094 SWALL:Q9ZMX1 (EMBL:AE001448) (260 aa) fasta scores: E(): 7.5e-22, 37.03% id in 216 aa. CDS overlapping 20 amino acids with the downstream CDS; putative glycosyltransferase 5113654 3288968 BF9343_4192 Bacteroides fragilis NCTC 9343 putative glycosyltransferase YP_213862.1 5112881 D 272559 CDS YP_213863.1 60683719 3289159 complement(5113588..5114298) 1 NC_003228.3 Similar to Salmonella typhimurium, and Salmonella typhi CobB protein or STM1221 or STY1261 or t1699 SWALL:COBB_SALTY (SWALL:P97013) (273 aa) fasta scores: E(): 1.4e-27, 44.62% id in 242 aa, and to Bacteroides thetaiotaomicron putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase BT2975 SWALL:Q8A3H9 (EMBL:AE016938) (234 aa) fasta scores: E(): 6.5e-78, 83.55% id in 231 aa, and to Helicobacter pylori J99 putative Jhp1180 SWALL:Q9ZJW8 (EMBL:AE001545) (234 aa) fasta scores: E(): 1.1e-42, 51.08% id in 231 aa. CDS overlapping 20 amino acids with the upstream CDS.; putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase 5114298 cobB 3289159 cobB Bacteroides fragilis NCTC 9343 putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase YP_213863.1 5113588 R 272559 CDS YP_213864.1 60683720 3285448 5114765..5115349 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri FkbP-type 22 kDa peptidyl-prolyl cis-trans isomerase FklB or B4207 or SF4279 or s4544 SWALL:FKBB_ECOLI (SWALL:P39311) (205 aa) fasta scores: E(): 7e-30, 50.51% id in 194 aa, and to Bacteroides thetaiotaomicron FkbP-type peptidyl-prolyl cis-trans isomerase, outer membrane protein precursor BT2976 SWALL:Q8A3H8 (EMBL:AE016938) (194 aa) fasta scores: E(): 6.5e-66, 93.29% id in 194 aa, and to Porphyromonas gingivalis immunoreactive 21 kDa antigen PG10 SWALL:Q9X6S1 (EMBL:AF144077) (195 aa) fasta scores: E(): 8e-34, 52.33% id in 193 aa; putative FkbP-type 22 kDa peptidyl-prolyl cis-trans isomerase 5115349 fklB 3285448 fklB Bacteroides fragilis NCTC 9343 putative FkbP-type 22 kDa peptidyl-prolyl cis-trans isomerase YP_213864.1 5114765 D 272559 CDS YP_213865.1 60683721 3288991 5115370..5116233 1 NC_003228.3 Similar to Escherichia coli, and Shigella flexneri Fkbp-type 22 kDa peptidyl-prolyl cis-trans isomerase FklB or B4207 or SF4279 or s4544 SWALL:FKBB_ECOLI (SWALL:P39311) (205 aa) fasta scores: E(): 2.1e-22, 43.66% id in 213 aa, and to Bacteroides thetaiotaomicron peptidylprolyl isomerase BT2977 SWALL:Q8A3H7 (EMBL:AE016938) (291 aa) fasta scores: E(): 1.5e-65, 70.75% id in 277 aa, and to Shewanella oneidensis FkbP-type peptidyl-prolyl cis-trans isomerase FkpA or so1065 SWALL:Q8EHY9 (EMBL:AE015551) (255 aa) fasta scores: E(): 7.6e-24, 42.79% id in 229 aa. Putative tandem duplication of the upstream CDS but extended at the N-terminus.; putative isomerase 5116233 3288991 BF9343_4195 Bacteroides fragilis NCTC 9343 putative isomerase YP_213865.1 5115370 D 272559 CDS YP_213866.1 60683722 3289130 5116426..5116890 1 NC_003228.3 Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri regulatory protein AsnC or B3743 or C4671 or Z5244 or ECS4685 or SF3823 or s3945 SWALL:ASNC_ECOLI (SWALL:P03809) (152 aa) fasta scores: E(): 8.1e-16, 40% id in 145 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT2978 SWALL:Q8A3H6 (EMBL:AE016938) (154 aa) fasta scores: E(): 1.2e-53, 95.45% id in 154 aa; putative AsnC-family transcriptional regulatory protein 5116890 3289130 BF9343_4196 Bacteroides fragilis NCTC 9343 putative AsnC-family transcriptional regulatory protein YP_213866.1 5116426 D 272559 CDS YP_213867.1 60683723 3288963 5116894..5117205 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, putative membrane protein BT2979 SWALL:Q8A3H5 (EMBL:AE016938) (103 aa) fasta scores: E(): 3.9e-40, 91.26% id in 103 aa, and to Clostridium acetobutylicum predicted membrane protein CAC3685 SWALL:Q97D04 (EMBL:AE007864) (94 aa) fasta scores: E(): 1.7e-16, 45.65% id in 92 aa; putative transmembrane protein 5117205 3288963 BF9343_4197 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213867.1 5116894 D 272559 CDS YP_213868.1 60683724 3288981 complement(5117443..5118216) 1 NC_003228.3 Similar to Bacillus anthracis response regulator LytR ba5691 SWALL:Q81JL3 (EMBL:AE017041) (246 aa) fasta scores: E(): 3.4e-12, 26.8% id in 250 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT1076 SWALL:Q8A8U1 (EMBL:AE016930) (259 aa) fasta scores: E(): 1.9e-58, 58.84% id in 260 aa, and to Bacteroides thetaiotaomicron two-component system response regulator BT3966 SWALL:Q8A0Q5 (EMBL:AE016943) (263 aa) fasta scores: E(): 8.9e-30, 37.64% id in 263 aa; putative two-component response regulator 5118216 3288981 BF9343_4198 Bacteroides fragilis NCTC 9343 putative two-component response regulator YP_213868.1 5117443 R 272559 CDS YP_213869.1 60683725 3288069 complement(5118209..5119234) 1 NC_003228.3 Similar to Pseudomonas aeruginosa alginate biosynthesis protein AlgZ or FimS or pa5262 SWALL:P77568 (EMBL:U52431) (358 aa) fasta scores: E(): 2.1e-09, 32.51% id in 203 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor protein, no kinase domain BT1266 SWALL:Q8A8A1 (EMBL:AE016931) (351 aa) fasta scores: E(): 1e-79, 62.39% id in 343 aa; putative two-component system sensor, no kinase domain 5119234 3288069 BF9343_4199 Bacteroides fragilis NCTC 9343 putative two-component system sensor, no kinase domain YP_213869.1 5118209 R 272559 CDS YP_213870.1 60683726 3289004 complement(5119277..5120569) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron outer membrane protein BT1267 SWALL:Q8A8A0 (EMBL:AE016931) (434 aa) fasta scores: E(): 6.4e-102, 66.74% id in 412 aa, and to Bacteroides thetaiotaomicron outer membrane efflux protein BT1695 SWALL:Q8A730 (EMBL:AE016932) (426 aa) fasta scores: E(): 5.4e-25, 27.4% id in 427 aa; putative outer membrane component of efflux transporter 5120569 3289004 BF9343_4200 Bacteroides fragilis NCTC 9343 putative outer membrane component of efflux transporter YP_213870.1 5119277 R 272559 CDS YP_213871.1 60683727 3288996 complement(5120569..5123601) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron transporter, AcrB/D/F family BT1268 SWALL:Q8A899 (EMBL:AE016931) (1010 aa) fasta scores: E(): 0, 83.66% id in 1010 aa, and to Bacteroides thetaiotaomicron transporter, AcrB/D/F family BT1694 SWALL:Q8A731 (EMBL:AE016932) (1012 aa) fasta scores: E(): 9.6e-145, 40.47% id in 1013 aa, and to Vibrio vulnificus YJ016 transporter, AcrB/D/F family VVA0535 SWALL:BAC96561 (EMBL:AP005346) (1016 aa) fasta scores: E(): 1.5e-128, 38.25% id in 1017 aa; putative transmembrane AcrB/D/F-family transporter 5123601 3288996 BF9343_4201 Bacteroides fragilis NCTC 9343 putative transmembrane AcrB/D/F-family transporter YP_213871.1 5120569 R 272559 CDS YP_213872.1 60683728 3288985 complement(5123598..5124641) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron component of multidrug efflux system BT1269 SWALL:Q8A898 (EMBL:AE016931) (356 aa) fasta scores: E(): 4.8e-74, 60.29% id in 340 aa, and to Vibrio vulnificus YJ016 membrane-fusion protein VVA0699 SWALL:BAC96725 (EMBL:AP005347) (357 aa) fasta scores: E(): 2.4e-23, 28.81% id in 347 aa; putative efflux transporter component 5124641 3288985 BF9343_4202 Bacteroides fragilis NCTC 9343 putative efflux transporter component YP_213872.1 5123598 R 272559 CDS YP_213873.1 60683729 3288993 complement(5130197..5130559) 1 NC_003228.3 no significant database matches; hypothetical protein 5130559 3288993 BF9343_4203 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213873.1 5130197 R 272559 CDS YP_213874.1 60683730 3288998 5130635..5130889 1 NC_003228.3 no significant database matches; hypothetical protein 5130889 3288998 BF9343_4204 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213874.1 5130635 D 272559 CDS YP_213875.1 60683731 3288997 5131352..5132101 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron D-alanyl-d-alanine dipeptidase BT3007 SWALL:Q8A3E7 (EMBL:AE016938) (292 aa) fasta scores: E(): 1.8e-56, 70.73% id in 205 aa, and to Porphyromonas gingivalis W83 D-alanyl-d-alanine dipeptidase PG1654 SWALL:AAQ66673 (EMBL:AE017177) (207 aa) fasta scores: E(): 2.5e-29, 43.75% id in 192 aa; putative D-Ala-D-Ala dipeptidase protein 5132101 3288997 BF9343_4205 Bacteroides fragilis NCTC 9343 putative D-Ala-D-Ala dipeptidase protein YP_213875.1 5131352 D 272559 CDS YP_213876.1 60683732 3289003 5132110..5133309 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3008 SWALL:Q8A3E6 (EMBL:AE016938) (395 aa) fasta scores: E(): 9e-105, 66.91% id in 402 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1098 SWALL:AAQ66209 (EMBL:AE017175) (407 aa) fasta scores: E(): 3.3e-44, 39.25% id in 377 aa; hypothetical protein 5133309 3289003 BF9343_4206 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213876.1 5132110 D 272559 CDS YP_213877.1 60683733 3288978 complement(5133355..5133762) 1 NC_003228.3 no significant database matches; hypothetical protein 5133762 3288978 BF9343_4207 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213877.1 5133355 R 272559 CDS YP_213878.1 60683734 3288999 complement(5133779..5135524) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT1762 SWALL:Q8A6W4 (EMBL:AE016933) (570 aa) fasta scores: E(): 3.5e-54, 38.4% id in 578 aa, and to Bacteroides thetaiotaomicron putative outer membrane protein, probably involved in nutrient binding BT3331 SWALL:Q8A2H4 (EMBL:AE016940) (572 aa) fasta scores: E(): 7.2e-11, 22.02% id in 604 aa; putative outer membrane protein 5135524 3288999 BF9343_4208 Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_213878.1 5133779 R 272559 CDS YP_213879.1 60683735 3288987 complement(5135536..5138736) 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 RagA protein RagA or PG0185 SWALL:AAQ65420 (EMBL:AE017172) (1017 aa) fasta scores: E(): 1.9e-50, 29.3% id in 1034 aa; putative TonB-dependent outer membrane receptor protein 5138736 3288987 BF9343_4209 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_213879.1 5135536 R 272559 CDS YP_213880.1 60683736 3288990 complement(5138779..5140443) 1 NC_003228.3 no significant database matches; hypothetical protein 5140443 3288990 BF9343_4210 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213880.1 5138779 R 272559 CDS YP_213881.1 60683737 3288961 complement(5140455..5141828) 1 NC_003228.3 Similar to Lactobacillus brevis D-xylose-proton symporter XylT SWALL:XYLT_LACBR (SWALL:O52733) (457 aa) fasta scores: E(): 2.4e-48, 37.35% id in 439 aa, and to Bacillus subtilis similar to metabolite transport proteins YwtG SWALL:P96742 (EMBL:Z92954) (457 aa) fasta scores: E(): 2.5e-53, 38.66% id in 450 aa; putative transmembrane sugar transporter 5141828 3288961 BF9343_4211 Bacteroides fragilis NCTC 9343 putative transmembrane sugar transporter YP_213881.1 5140455 R 272559 CDS YP_213882.1 60683738 3289001 complement(5142098..5144851) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT1754 SWALL:Q8A6X1 (EMBL:AE016933) (921 aa) fasta scores: E(): 1.9e-68, 35.62% id in 932 aa, and to Bacteroides thetaiotaomicron two-component system sensor histidine kinase/response regulator, hybrid BT4178 SWALL:Q8A043 (EMBL:AE016944) (1433 aa) fasta scores: E(): 2.1e-57, 34.92% id in 567 aa; putative two-component system sensor kinase/response regulator fusion protein 5144851 3289001 BF9343_4212 Bacteroides fragilis NCTC 9343 putative two-component system sensor kinase/response regulator fusion protein YP_213882.1 5142098 R 272559 CDS YP_213883.1 60683739 3289009 complement(5145015..5146661) 1 NC_003228.3 Similar to Actinomyces naeslundii levanase LevJ SWALL:Q44109 (EMBL:U12274) (943 aa) fasta scores: E(): 4.4e-37, 35.3% id in 456 aa, and to Bacteroides thetaiotaomicron 2,6-beta-D-fructofuranosidase precursor BT3082 SWALL:Q8A373 (EMBL:AE016938) (548 aa) fasta scores: E(): 1.5e-174, 72.26% id in 548 aa, and to Bacillus subtilis levanase precursor SacC or BSU27030 SWALL:SACC_BACSU (SWALL:P05656) (677 aa) fasta scores: E(): 9.4e-50, 40.89% id in 494 aa; putative glycosylhydrolase 5146661 3289009 BF9343_4213 Bacteroides fragilis NCTC 9343 putative glycosylhydrolase YP_213883.1 5145015 R 272559 CDS YP_213884.1 60683740 3288972 5146891..5149653 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron TonB-dependent receptor BT3016 SWALL:Q8A3D8 (EMBL:AE016938) (938 aa) fasta scores: E(): 6.4e-123, 64.93% id in 941 aa, and to Shewanella oneidensis conserved hypothetical protein so2523 SWALL:Q8EE66 (EMBL:AE015694) (943 aa) fasta scores: E(): 1.2e-66, 28.21% id in 932 aa, and to Pseudomonas syringae TonB-dependent receptor, putative PSPTO3242 SWALL:Q880C9 (EMBL:AE016867) (838 aa) fasta scores: E(): 9.7e-59, 28.35% id in 857 aa; putative TonB-dependent outer membrane receptor protein 5149653 3288972 BF9343_4214 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_213884.1 5146891 D 272559 CDS YP_213885.1 60683741 3287398 5149798..5150730 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron acid phosphatase BT3017 SWALL:Q8A3D7 (EMBL:AE016938) (310 aa) fasta scores: E(): 8.8e-111, 82.58% id in 310 aa, and to Arabidopsis thaliana putative purple acid phosphatase at1g14700 SWALL:Q8VYS7 (EMBL:AY070051) (352 aa) fasta scores: E(): 2.5e-25, 32.06% id in 315 aa; putative acid phosphatase 5150730 3287398 BF9343_4215 Bacteroides fragilis NCTC 9343 putative acid phosphatase YP_213885.1 5149798 D 272559 CDS YP_213886.1 60683742 3286224 complement(5150802..5152583) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative mechano-sensitive ion channel BT3018 SWALL:Q8A3D6 (EMBL:AE016938) (616 aa) fasta scores: E(): 5e-176, 75% id in 580 aa, and to Synechocystis sp. hypothetical protein Sll0590 SWALL:Q55859 (EMBL:D64004) (564 aa) fasta scores: E(): 6e-64, 36.51% id in 534 aa; putative transmembrane ion channel 5152583 3286224 BF9343_4216 Bacteroides fragilis NCTC 9343 putative transmembrane ion channel YP_213886.1 5150802 R 272559 CDS YP_213887.1 60683743 3289002 5152737..5153693 1 NC_003228.3 Similar to Porphyromonas gingivalis W83 K+-dependent Na+/Ca+ exchanger related-protein PG1041 SWALL:AAQ66160 (EMBL:AE017175) (317 aa) fasta scores: E(): 2.1e-61, 55.55% id in 315 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob0443 SWALL:Q8ET21 (EMBL:AP004594) (318 aa) fasta scores: E(): 2.4e-49, 48.26% id in 317 aa; putative transmembrane K+ dependent Na+/Ca+ exchanger-related protein 5153693 3289002 BF9343_4217 Bacteroides fragilis NCTC 9343 putative transmembrane K+ dependent Na+/Ca+ exchanger-related protein YP_213887.1 5152737 D 272559 CDS YP_213888.1 60683744 3289017 5153782..5154918 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein, with a weak acyltransferase domain BT3032 SWALL:Q8A3C2 (EMBL:AE016938) (378 aa) fasta scores: E(): 7.3e-133, 88.06% id in 377 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0276 SWALL:AAQ65496 (EMBL:AE017173) (395 aa) fasta scores: E(): 2.1e-86, 57.67% id in 378 aa; hypothetical protein 5154918 3289017 BF9343_4218 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213888.1 5153782 D 272559 CDS YP_213889.1 60683745 3289263 5154924..5156795 1 NC_003228.3 Similar to Chlamydia trachomatis topoisomerase IV subunit B ParE SWALL:O85120 (EMBL:AF044268) (554 aa) fasta scores: E(): 2.1e-82, 50.08% id in 563 aa, and to Bacteroides thetaiotaomicron DNA topoisomerase IV subunit B BT3033 SWALL:Q8A3C1 (EMBL:AE016938) (625 aa) fasta scores: E(): 0, 92.46% id in 624 aa, and to Porphyromonas gingivalis W83 DNA topoisomerase IV, B subunit, putative PG0368 SWALL:AAQ65577 (EMBL:AE017173) (644 aa) fasta scores: E(): 3.6e-133, 63.05% id in 636 aa; putative topoisomerase IV subunit B 5156795 parE 3289263 parE Bacteroides fragilis NCTC 9343 putative topoisomerase IV subunit B YP_213889.1 5154924 D 272559 CDS YP_213890.1 60683746 3289007 5156798..5157250 1 NC_003228.3 Similar to Bacillus subtilis phosphopantetheine adenylyltransferase CoAD or BSU15020 SWALL:COAD_BACSU (SWALL:O34797) (161 aa) fasta scores: E(): 8.9e-18, 38.51% id in 148 aa, and to Bacteroides thetaiotaomicron phosphopantetheine adenylyltransferase CoAD or BT3034 SWALL:COAD_BACTN (SWALL:Q8A3C0) (151 aa) fasta scores: E(): 2e-51, 89.33% id in 150 aa, and to Porphyromonas gingivalis W83 phosphopantetheine adenylyltransferase CoAD or PG0369 SWALL:AAQ65578 (EMBL:AE017173) (153 aa) fasta scores: E(): 2e-26, 50.69% id in 144 aa; putative phosphopantetheine adenylyltransferase 5157250 3289007 BF9343_4220 Bacteroides fragilis NCTC 9343 putative phosphopantetheine adenylyltransferase YP_213890.1 5156798 D 272559 CDS YP_213891.1 60683747 3289010 5157260..5158888 1 NC_003228.3 Similar to Bartonella bacilliformis carboxy-terminal processing protease precursor CtpA SWALL:CTPA_BARBA (SWALL:Q44879) (434 aa) fasta scores: E(): 1.7e-33, 36.33% id in 355 aa, and to Bacteroides thetaiotaomicron carboxy-terminal processing protease precursor BT3035 SWALL:Q8A3B9 (EMBL:AE016938) (529 aa) fasta scores: E(): 9.8e-109, 80.14% id in 544 aa, and to Porphyromonas gingivalis W83 carboxyl-terminal protease PG0235 SWALL:AAQ65464 (EMBL:AE017172) (507 aa) fasta scores: E(): 1e-58, 48.84% id in 518 aa; putative carboxy-terminal processing protease precursor 5158888 3289010 BF9343_4221 Bacteroides fragilis NCTC 9343 putative carboxy-terminal processing protease precursor YP_213891.1 5157260 D 272559 CDS YP_213892.1 60683748 3289019 complement(5158972..5159595) 1 NC_003228.3 Similar to Streptomyces coelicolor putative integral membrane protein sco1047 or scg20a.27 SWALL:Q9K3L3 (EMBL:AL939107) (230 aa) fasta scores: E(): 2.9e-09, 37.73% id in 159 aa, and to Methanococcus jannaschii hypothetical protein Mj0374 mj0374 SWALL:Y374_METJA (SWALL:Q57819) (330 aa) fasta scores: E(): 1.3e-08, 35.58% id in 163 aa, and to Vibrio cholerae hypothetical protein Vc2488 vc2488 SWALL:Q9KP85 (EMBL:AE004318) (178 aa) fasta scores: E(): 1.6e-08, 32.29% id in 161 aa; putative transmembrane PAP2-family protein 5159595 3289019 BF9343_4222 Bacteroides fragilis NCTC 9343 putative transmembrane PAP2-family protein YP_213892.1 5158972 R 272559 CDS YP_213893.1 60683749 3289018 5159711..5160586 1 NC_003228.3 Similar to Photorhabdus luminescens transcriptional regulator LscA SWALL:Q84H02 (EMBL:AY144116) (272 aa) fasta scores: E(): 1.6e-06, 24.72% id in 271 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT3052 SWALL:Q8A3A2 (EMBL:AE016938) (316 aa) fasta scores: E(): 4.9e-87, 69.58% id in 286 aa; putative AraC-family transcriptional regulator 5160586 3289018 BF9343_4223 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_213893.1 5159711 D 272559 CDS YP_213894.1 60683750 3288967 5161273..5161965 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis fumarate reductase cytochrome b subunit frdC SWALL:Q7X480 (EMBL:AY174185) (230 aa) fasta scores: E(): 1.4e-93, 100% id in 230 aa, and to Bacteroides thetaiotaomicron putative cytochrome b subunit BT3053 SWALL:Q8A3A1 (EMBL:AE016938) (234 aa) fasta scores: E(): 7.6e-82, 87.17% id in 234 aa; fumarate reductase transmembrane cytochrome b subunit 5161965 3288967 BF9343_4224 Bacteroides fragilis NCTC 9343 fumarate reductase transmembrane cytochrome b subunit YP_213894.1 5161273 D 272559 CDS YP_213895.1 60683751 3289013 5162003..5163946 1 NC_003228.3 Identical to previously sequenced Bacteroides fragilis fumarate reductase flavoprotein subunit frdA SWALL:Q7X479 (EMBL:AY174185) (647 aa) fasta scores: E(): 0, 100% id in 647 aa, and to Porphyromonas gingivalis W83 fumarate reductase, flavoprotein subunit FrdA or PG1615 SWALL:AAQ66643 (EMBL:AE017177) (647 aa) fasta scores: E(): 1.2e-206, 81.17% id in 648 aa, and to Chlorobium tepidum succinate dehydrogenase, flavoprotein subunit SdhA or CT2267 SWALL:Q8KAA0 (EMBL:AE012972) (646 aa) fasta scores: E(): 1e-176, 68.88% id in 646 aa; fumarate reductase 5163946 3289013 BF9343_4225 Bacteroides fragilis NCTC 9343 fumarate reductase YP_213895.1 5162003 D 272559 CDS YP_213896.1 60683752 3288973 5163976..5164731 1 NC_003228.3 Similar to Bacteroides fragilis fumarate reductase iron-sulfur cluster protein subunit FrdB SWALL:Q7X478 (EMBL:AY174185) (251 aa) fasta scores: E(): 5.6e-99, 100% id in 251 aa, and to Bacteroides thetaiotaomicron succinate dehydrogenase iron-sulfur protein BT3055 SWALL:Q8A399 (EMBL:AE016938) (251 aa) fasta scores: E(): 1.7e-92, 93.22% id in 251 aa; fumarate reductase iron-sulfur protein 5164731 3288973 BF9343_4226 Bacteroides fragilis NCTC 9343 fumarate reductase iron-sulfur protein YP_213896.1 5163976 D 272559 CDS YP_213897.1 60683753 3289006 complement(5164812..5165942) 1 NC_003228.3 Similar to Pseudomonas aeruginosa iron-uptake factor PiuB SWALL:O68591 (EMBL:AF051690) (814 aa) fasta scores: E(): 4.6e-09, 27.11% id in 343 aa, and to Nitrosomonas europaea hypothetical protein NE0550 SWALL:Q82WV7 (EMBL:BX321857) (410 aa) fasta scores: E(): 3.6e-18, 27.41% id in 394 aa, and to Pseudomonas putida sulfite reductase, flavoprotein component, putative PP0860 SWALL:Q88PJ0 (EMBL:AE016777) (849 aa) fasta scores: E(): 1.2e-17, 27.62% id in 391 aa; putative iron-regulated transmembrane protein 5165942 3289006 BF9343_4227 Bacteroides fragilis NCTC 9343 putative iron-regulated transmembrane protein YP_213897.1 5164812 R 272559 CDS YP_213898.1 60683754 3289025 complement(5165949..5167169) 1 NC_003228.3 no significant database matches; hypothetical protein 5167169 3289025 BF9343_4228 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213898.1 5165949 R 272559 CDS YP_213899.1 60683755 3289027 complement(5167179..5169596) 1 NC_003228.3 Similar to Stigmatella aurantiaca outer membrane protein MxcH SWALL:Q9F634 (EMBL:AF299336) (869 aa) fasta scores: E(): 1.5e-54, 30.42% id in 710 aa, and to Bacteroides thetaiotaomicron putative TonB-linked outer membrane receptor BT2065 SWALL:Q8A621 (EMBL:AE016934) (796 aa) fasta scores: E(): 4.1e-104, 39.46% id in 788 aa; putative TonB-dependent outer membrane receptor protein 5169596 3289027 BF9343_4229 Bacteroides fragilis NCTC 9343 putative TonB-dependent outer membrane receptor protein YP_213899.1 5167179 R 272559 CDS YP_213900.1 60683756 3289029 complement(5169729..5170574) 1 NC_003228.3 Limited similarity to Photorhabdus luminescens transcriptional regulator LscA SWALL:Q84H02 (EMBL:AY144116) (272 aa) fasta scores: E(): 0.00012, 23.36% id in 244 aa, and to Bacteroides thetaiotaomicron transcriptional regulator BT3058 SWALL:Q8A396 (EMBL:AE016938) (280 aa) fasta scores: E(): 2.6e-83, 71.58% id in 278 aa; putative AraC-family transcriptional regulator 5170574 3289029 BF9343_4230 Bacteroides fragilis NCTC 9343 putative AraC-family transcriptional regulator YP_213900.1 5169729 R 272559 CDS YP_213901.1 60683757 3289000 complement(5170797..5171807) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3059 SWALL:Q8A395 (EMBL:AE016938) (324 aa) fasta scores: E(): 1.7e-17, 33.52% id in 346 aa; hypothetical protein 5171807 3289000 BF9343_4231 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213901.1 5170797 R 272559 CDS YP_213902.1 60683758 3289028 complement(5171863..5172828) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3060 SWALL:Q8A394 (EMBL:AE016938) (304 aa) fasta scores: E(): 1.6e-68, 60.13% id in 306 aa; hypothetical protein 5172828 3289028 BF9343_4232 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213902.1 5171863 R 272559 CDS YP_213903.1 60683759 3289020 complement(5172835..5173854) 1 NC_003228.3 C-terminus is similar to C-terminus of Bacteroides thetaiotaomicron conserved hypothetical protein BT3061 SWALL:Q8A393 (EMBL:AE016938) (425 aa) fasta scores: E(): 1.6e-60, 62.41% id in 298 aa; putative transmembrane protein 5173854 3289020 BF9343_4233 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213903.1 5172835 R 272559 CDS YP_213904.1 60683760 3289026 complement(5174406..5175527) 1 NC_003228.3 Similar to Escherichia coli Smf protein or b3285/b3286 SWALL:SMF_ECOLI (SWALL:P30852) (374 aa) fasta scores: E(): 7.6e-22, 33.67% id in 294 aa, and to Bacteroides thetaiotaomicron Smf protein DNA processing chain A BT3070 SWALL:Q8A385 (EMBL:AE016938) (358 aa) fasta scores: E(): 8.9e-100, 73.1% id in 357 aa, and to Porphyromonas gingivalis W83 DNA processing protein DprA, putative DprA or PG0295 SWALL:AAQ65513 (EMBL:AE017173) (374 aa) fasta scores: E(): 2.8e-60, 45.13% id in 370 aa; putative DNA processing Smf-like protein 5175527 3289026 BF9343_4234 Bacteroides fragilis NCTC 9343 putative DNA processing Smf-like protein YP_213904.1 5174406 R 272559 CDS YP_213905.1 60683761 3289015 complement(5175524..5175928) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3071 SWALL:Q8A384 (EMBL:AE016938) (134 aa) fasta scores: E(): 1.5e-46, 91.04% id in 134 aa, and to Porphyromonas gingivalis W83 thioesterase family protein PG1543 SWALL:AAQ66581 (EMBL:AE017177) (139 aa) fasta scores: E(): 3.4e-21, 47.72% id in 132 aa; putative thioesterase protein 5175928 3289015 BF9343_4235 Bacteroides fragilis NCTC 9343 putative thioesterase protein YP_213905.1 5175524 R 272559 CDS YP_213906.1 60683762 3289035 complement(5175930..5177198) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron collagenase precursor BT3072 SWALL:Q8A383 (EMBL:AE016938) (427 aa) fasta scores: E(): 9e-149, 92.6% id in 419 aa, and to Porphyromonas gingivalis collagenase prtC SWALL:O24788 (EMBL:AB006973) (417 aa) fasta scores: E(): 5.4e-112, 69.41% id in 412 aa; putative peptidase 5177198 3289035 BF9343_4236 Bacteroides fragilis NCTC 9343 putative peptidase YP_213906.1 5175930 R 272559 CDS YP_213907.1 60683763 3289014 complement(5177233..5177691) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3536 SWALL:AAO78642 (EMBL:AE016941) (329 aa) fasta scores: E(): 9.4e-13, 32.89% id in 152 aa, and to Bradyrhizobium japonicum BLL7875 protein SWALL:BAC53140 (EMBL:AP005963) (173 aa) fasta scores: E(): 8.2e-06, 23.12% id in 160 aa; hypothetical protein 5177691 3289014 BF9343_4237 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213907.1 5177233 R 272559 CDS YP_213908.1 60683764 3289024 5177786..5178760 1 NC_003228.3 Similar to Azospirillum brasilense NifR3-like protein SWALL:NIR3_AZOBR (SWALL:P45672) (328 aa) fasta scores: E(): 1.6e-36, 38.12% id in 320 aa, and to Bacteroides thetaiotaomicron putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain BT3073 SWALL:Q8A382 (EMBL:AE016938) (330 aa) fasta scores: E(): 4.1e-107, 85.89% id in 319 aa, and to Porphyromonas gingivalis W83 TIM-barrel protein, putative, NifR3 family PG0021 SWALL:AAQ65277 (EMBL:AE017172) (333 aa) fasta scores: E(): 1.3e-88, 69.27% id in 319 aa; putative TIM-barrel protein, possible dihydrouridine synthase 5178760 3289024 BF9343_4238 Bacteroides fragilis NCTC 9343 putative TIM-barrel protein, possible dihydrouridine synthase YP_213908.1 5177786 D 272559 CDS YP_213909.1 60683765 3289031 complement(5178911..5179876) 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3074 SWALL:Q8A381 (EMBL:AE016938) (321 aa) fasta scores: E(): 1.3e-111, 85.34% id in 307 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG1738 SWALL:AAQ66743 (EMBL:AE017178) (344 aa) fasta scores: E(): 3e-53, 47.85% id in 303 aa; putative transmembrane protein 5179876 3289031 BF9343_4239 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213909.1 5178911 R 272559 CDS YP_213910.1 60683766 3289039 complement(5179867..5180874) 1 NC_003228.3 Similar to Vibrio cholerae UDP-glucose 4-epimerase GalE or WbfT SWALL:GALE_VIBCH (SWALL:Q56623) (328 aa) fasta scores: E(): 1.1e-08, 24.77% id in 335 aa, and to Bacteroides thetaiotaomicron NAD-dependent epimerase/dehydratase family protein BT3075 SWALL:Q8A380 (EMBL:AE016938) (335 aa) fasta scores: E(): 5.6e-125, 89.25% id in 335 aa, and to Porphyromonas gingivalis W83 NAD dependent epimerase/reductase-related protein PG1954 SWALL:AAQ66935 (EMBL:AE017178) (339 aa) fasta scores: E(): 1.9e-47, 38.5% id in 335 aa; putative UDP-glucose 4-epimerase 5180874 3289039 BF9343_4240 Bacteroides fragilis NCTC 9343 putative UDP-glucose 4-epimerase YP_213910.1 5179867 R 272559 CDS YP_213911.1 60683767 3289033 complement(5180896..5181795) 1 NC_003228.3 Similar to Magnetospirillum gryphiswaldense magnetosome protein MamB SWALL:CAE12043 (EMBL:BX571797) (297 aa) fasta scores: E(): 1.6e-21, 27.2% id in 272 aa, and to Methanosarcina mazei cobalt-zinc-cadmium resistance protein CzcD or MM1778 SWALL:Q8PW24 (EMBL:AE013414) (323 aa) fasta scores: E(): 8.8e-57, 51.35% id in 296 aa, and to Porphyromonas gingivalis W83 cation efflux family protein PG2090 SWALL:AAQ67050 (EMBL:AE017179) (302 aa) fasta scores: E(): 9.7e-57, 50.67% id in 296 aa; putative transmembrane cation efflux protein 5181795 3289033 BF9343_4241 Bacteroides fragilis NCTC 9343 putative transmembrane cation efflux protein YP_213911.1 5180896 R 272559 CDS YP_213912.1 60683768 3289008 5181899..5184043 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron ribonuclease R BT3077 SWALL:Q8A378 (EMBL:AE016938) (718 aa) fasta scores: E(): 0, 89.95% id in 717 aa, and to Porphyromonas gingivalis W83 ribonuclease R VacB or PG1721 SWALL:AAQ66728 (EMBL:AE017177) (702 aa) fasta scores: E(): 1.5e-178, 63.89% id in 698 aa, and to Clostridium tetani exoribonuclease II CTC00384 SWALL:Q898Q8 (EMBL:AE015937) (708 aa) fasta scores: E(): 1.2e-93, 38.67% id in 724 aa; putative exoribonuclease 5184043 3289008 BF9343_4242 Bacteroides fragilis NCTC 9343 putative exoribonuclease YP_213912.1 5181899 D 272559 CDS YP_213913.1 60683769 3289040 5184056..5184334 1 NC_003228.3 no significant database matches; hypothetical protein 5184334 3289040 BF9343_4243 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213913.1 5184056 D 272559 CDS YP_213914.1 60683770 3289032 5184744..5185229 1 NC_003228.3 Limited similarity to Bacillus subtilis RNA polymerase sigma factor SigV or BSU27120 SWALL:SIGV_BACSU (SWALL:O05404) (166 aa) fasta scores: E(): 0.00011, 24.69% id in 162 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT2184 SWALL:Q8A5Q4 (EMBL:AE016935) (164 aa) fasta scores: E(): 8.7e-19, 40.25% id in 159 aa, and to Bacteroides thetaiotaomicron RNA polymerase ECF-type sigma factor BT0248 SWALL:Q8AB63 (EMBL:AE016926) (169 aa) fasta scores: E(): 1.9e-14, 34.16% id in 161 aa; putative RNA polymerase ECF-type sigma factor 5185229 3289032 BF9343_4244 Bacteroides fragilis NCTC 9343 putative RNA polymerase ECF-type sigma factor YP_213914.1 5184744 D 272559 CDS YP_213915.1 60683771 3289034 5185235..5185843 1 NC_003228.3 no significant database matches; putative transmembrane protein 5185843 3289034 BF9343_4245 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213915.1 5185235 D 272559 CDS YP_213916.1 60683772 3289038 5186012..5186485 1 NC_003228.3 Similar to previously sequenced Bacteroides fragilis 5-nitroimadazole resistance determinant NimD protein SWALL:Q45150 (EMBL:X76949) (164 aa) fasta scores: E(): 5.1e-07, 30.43% id in 161 aa, and to Bacteroides thetaiotaomicron 5-nitroimidazole antibiotic resistance protein BT3078 SWALL:Q8A377 (EMBL:AE016938) (159 aa) fasta scores: E(): 2.3e-42, 62.74% id in 153 aa, and to Methanosarcina mazei 5-nitroimidazole antibiotic resistance protein MM2842 SWALL:Q8PT76 (EMBL:AE013534) (155 aa) fasta scores: E(): 2.5e-15, 34.69% id in 147 aa; putative 5-nitroimadazole antibiotic resistance protein 5186485 3289038 BF9343_4246 Bacteroides fragilis NCTC 9343 putative 5-nitroimadazole antibiotic resistance protein YP_213916.1 5186012 D 272559 CDS YP_213917.1 60683773 3287406 complement(5186583..5187530) 1 NC_003228.3 Similar to Methanosarcina barkeri O-acetylserine CysK SWALL:Q9UWP0 (EMBL:AF174138) (308 aa) fasta scores: E(): 3.7e-65, 62.78% id in 309 aa, and to Bacteroides thetaiotaomicron cysteine synthase a BT3080 SWALL:Q8A375 (EMBL:AE016938) (315 aa) fasta scores: E(): 9.3e-94, 86.34% id in 315 aa, and to Bacteroides thetaiotaomicron cysteine synthase A BT1852 SWALL:Q8A6M5 (EMBL:AE016933) (317 aa) fasta scores: E(): 1.1e-76, 71.74% id in 315 aa; putative cysteine synthase 5187530 cysK 3287406 cysK Bacteroides fragilis NCTC 9343 putative cysteine synthase YP_213917.1 5186583 R 272559 CDS YP_213918.1 60683774 3289023 complement(5187678..5188490) 1 NC_003228.3 Similar to Rhodococcus sp Heroin esterase Her SWALL:O06441 (EMBL:U70619) (322 aa) fasta scores: E(): 1.7e-05, 34.32% id in 134 aa, and to Bacteroides thetaiotaomicron lipase, putative BT3084 SWALL:Q8A371 (EMBL:AE016938) (273 aa) fasta scores: E(): 3e-73, 71.05% id in 266 aa, and to Rhodopirellula baltica probable lipase rb7907 SWALL:CAD75643 (EMBL:BX294146) (280 aa) fasta scores: E(): 8.8e-51, 50.37% id in 270 aa; putative lipase/esterase 5188490 3289023 BF9343_4248 Bacteroides fragilis NCTC 9343 putative lipase/esterase YP_213918.1 5187678 R 272559 CDS YP_213919.1 60683775 3289043 5188663..5190048 1 NC_003228.3 no significant database matches; putative metalloprotease 5190048 3289043 BF9343_4249 Bacteroides fragilis NCTC 9343 putative metalloprotease YP_213919.1 5188663 D 272559 CDS YP_213920.1 60683776 3289036 5190269..5191372 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron GTP-binding protein BT3116 SWALL:Q8A339 (EMBL:AE016939) (367 aa) fasta scores: E(): 1.4e-125, 97% id in 367 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG0048 SWALL:AAQ65299 (EMBL:AE017172) (367 aa) fasta scores: E(): 1.5e-109, 83.65% id in 367 aa, and to Bacillus anthracis GTP-binding protein YchF or BA5724 SWALL:Q81JI1 (EMBL:AE017041) (366 aa) fasta scores: E(): 4.2e-77, 59.62% id in 369 aa; putative ATP/GTP-binding protein 5191372 3289036 BF9343_4250 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding protein YP_213920.1 5190269 D 272559 CDS YP_213921.1 60683777 3289057 5191668..5192597 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron putative oxidoreductase BT3117 SWALL:Q8A338 (EMBL:AE016939) (303 aa) fasta scores: E(): 1.6e-96, 85.8% id in 303 aa, and to Bordetella parapertussis putative oxidoreductase bpp4389 SWALL:CAE39668 (EMBL:BX640436) (309 aa) fasta scores: E(): 2.3e-16, 28.91% id in 294 aa, and to Bacillus anthracis 2-dehydropantoate 2-reductase, putative ba1884 SWALL:Q81RZ8 (EMBL:AE017030) (314 aa) fasta scores: E(): 2.3e-16, 27.21% id in 294 aa; putative 2-dehydropantoate 2-reductase 5192597 3289057 BF9343_4251 Bacteroides fragilis NCTC 9343 putative 2-dehydropantoate 2-reductase YP_213921.1 5191668 D 272559 CDS YP_213922.1 60683778 3289051 5192608..5193441 1 NC_003228.3 Similar to Rickettsia prowazekii prolipoprotein diacylglyceryl transferase Lgt or rp046 SWALL:LGT_RICPR (SWALL:Q9ZE99) (268 aa) fasta scores: E(): 6.9e-19, 31.38% id in 274 aa, and to Bacteroides thetaiotaomicron prolipoprotein diacylglyceryl transferase BT3118 SWALL:Q8A337 (EMBL:AE016939) (281 aa) fasta scores: E(): 2.1e-104, 82.85% id in 280 aa, and to Chlorobium tepidum prolipoprotein diacylglyceryl transferase Lgt or CT1090 SWALL:Q8KDG0 (EMBL:AE012872) (289 aa) fasta scores: E(): 1.3e-25, 32.21% id in 267 aa; putative prolipoprotein diacylglyceryl transferase 5193441 3289051 BF9343_4252 Bacteroides fragilis NCTC 9343 putative prolipoprotein diacylglyceryl transferase YP_213922.1 5192608 D 272559 CDS YP_213923.1 60683779 3289044 5193438..5194079 1 NC_003228.3 Similar to Staphylococcus aureus chloramphenicol acetyltransferase Cat SWALL:CAT1_STAAU (SWALL:P00485) (216 aa) fasta scores: E(): 1.1e-12, 27.05% id in 207 aa, and to Bacteroides thetaiotaomicron chloramphenicol acetyltransferase BT3119 SWALL:Q8A336 (EMBL:AE016939) (214 aa) fasta scores: E(): 3.3e-62, 71.49% id in 214 aa; possible chloramphenicol acetyltransferase 5194079 3289044 BF9343_4253 Bacteroides fragilis NCTC 9343 possible chloramphenicol acetyltransferase YP_213923.1 5193438 D 272559 CDS YP_213924.1 60683780 3285960 complement(5194080..5196719) 1 NC_003228.3 Similar to Escherichia coli DNA mismatch repair protein MutS or fdv or B2733 SWALL:MUTS_ECOLI (SWALL:P23909) (853 aa) fasta scores: E(): 2.1e-110, 39.03% id in 866 aa, and to Bacteroides thetaiotaomicron DNA mismatch repair protein MutS BT3121 SWALL:Q8A334 (EMBL:AE016939) (862 aa) fasta scores: E(): 0, 93.96% id in 862 aa, and to Porphyromonas gingivalis W83 DNA mismatch repair protein MutS or PG0095 SWALL:AAQ65342 (EMBL:AE017172) (891 aa) fasta scores: E(): 6.7e-201, 63.87% id in 883 aa. Putative alternative start site at codon 18 and/or 19; putative DNA mismatch repair protein MutS 5196719 mutS 3285960 mutS Bacteroides fragilis NCTC 9343 putative DNA mismatch repair protein MutS YP_213924.1 5194080 R 272559 CDS YP_213925.1 60683781 3289021 5196943..5197335 1 NC_003228.3 no significant database matches; hypothetical protein 5197335 3289021 BF9343_4255 Bacteroides fragilis NCTC 9343 hypothetical protein YP_213925.1 5196943 D 272559 CDS YP_213926.1 60683782 3289042 5197435..5198511 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron hypothetical protein BT3056 SWALL:AAO78162 (EMBL:AE016938) (409 aa) fasta scores: E(): 9.3e-08, 24.09% id in 415 aa; putative ATP/GTP-binding protein 5198511 3289042 BF9343_4256 Bacteroides fragilis NCTC 9343 putative ATP/GTP-binding protein YP_213926.1 5197435 D 272559 CDS YP_213927.1 60683783 3289177 5198827..5201658 1 NC_003228.3 Similar to Bacillus subtilis leucyl-tRNA synthetase LeuS or BSU30320 SWALL:SYL_BACSU (SWALL:P36430) (804 aa) fasta scores: E(): 8.5e-35, 42.75% id in 945 aa, and to Bacteroides thetaiotaomicron leucyl-tRNA synthetase BT3126 SWALL:Q8A329 (EMBL:AE016939) (944 aa) fasta scores: E(): 0, 87.28% id in 944 aa, and to Porphyromonas gingivalis W83 leucyl-tRNA synthetase LeuS or PG0796 SWALL:AAQ65957 (EMBL:AE017174) (925 aa) fasta scores: E(): 9e-163, 69.57% id in 950 aa; putative Leucyl-tRNA synthetase 5201658 leuS 3289177 leuS Bacteroides fragilis NCTC 9343 putative Leucyl-tRNA synthetase YP_213927.1 5198827 D 272559 CDS YP_213928.1 60683784 3289041 5201673..5202572 1 NC_003228.3 Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3127 SWALL:Q8A328 (EMBL:AE016939) (305 aa) fasta scores: E(): 1e-97, 79.08% id in 306 aa, and to Bacteroides thetaiotaomicron putative transporter BT4242 SWALL:Q89ZX9 (EMBL:AE016944) (296 aa) fasta scores: E(): 3.3e-68, 56.71% id in 298 aa, and to Streptococcus pneumoniae conserved hypothetical protein spr1018 SWALL:Q8DPT5 (EMBL:AE008474) (282 aa) fasta scores: E(): 4.9e-28, 31.69% id in 284 aa; putative transmembrane protein 5202572 3289041 BF9343_4258 Bacteroides fragilis NCTC 9343 putative transmembrane protein YP_213928.1 5201673 D 272559 CDS YP_213929.1 60683785 3289037 5202583..5203167 1 NC_003228.3 Similar to Bacillus subtilis Ham1 protein homolog YsnA or BSU28360 SWALL:HAM1_BACSU (SWALL:P94558) (198 aa) fasta scores: E(): 1.3e-23, 41.53% id in 195 aa, and to Bacteroides thetaiotaomicron putative xanthosine triphosphate pyrophosphatase BT3128 SWALL:Q8A327 (EMBL:AE016939) (193 aa) fasta scores: E(): 3.2e-66, 86.97% id in 192 aa; putative Ham1-like protein 5203167 3289037 BF9343_4259 Bacteroides fragilis NCTC 9343 putative Ham1-like protein YP_213929.1 5202583 D 272559 CDS YP_213930.1 60683786 3289158 complement(5203758..5204750) 1 NC_003228.3 Similar to Escherichia coli quinolinate synthetase A NadA or NicA or B0750 SWALL:NADA_ECOLI (SWALL:P11458) (347 aa) fasta scores: E(): 1.3e-44, 42.77% id in 332 aa, and to Bacteroides thetaiotaomicron quinolinate synthetase A BT3164 SWALL:Q8A2Z1 (EMBL:AE016939) (312 aa) fasta scores: E(): 4.8e-104, 86.45% id in 310 aa, and to Gloeobacter violaceus quinolinate synthetase NadA SWALL:BAC88133 (EMBL:AP006568) (319 aa) fasta scores: E(): 2.7e-72, 59.93% id in 317 aa; putative quinolinate synthetase A 5204750 nadA 3289158 nadA Bacteroides fragilis NCTC 9343 putative quinolinate synthetase A YP_213930.1 5203758 R 272559 CDS YP_209695.1 60650142 3284946 129..722 1 NC_006873.1 Similar to Escherichia coli Min SWALL:Q05517 (EMBL:X62121) (190 aa) fasta scores: E(): 7.7e-28, 51.61% id in 186 aa, and to Salmonella typhimurium DNA-invertase Hin or STM2772 SWALL:HIN_SALTY (SWALL:P03013) (190 aa) fasta scores: E(): 5.2e-27, 46.59% id in 191 aa; putative resolvase/DNA invertase 722 finB 3284946 finB Bacteroides fragilis NCTC 9343 putative resolvase/DNA invertase YP_209695.1 129 D 272559 CDS YP_209696.1 60650143 3284935 1147..2157 1 NC_006873.1 Similar to N-terminus of DNA primases form IncP-beta plasimds e.g. Escherichia coli R751 DNA primase TraC SW:TRC5_ECOLI (P27190) (1448 aa) fasta scores: E(): 1.1e-10, 29.66% id in 300 aa, and to full length of Sphingomonas aromaticivorans Plasmid pNL1 protein similar to N-terminus replication primases ORF382 TR:O85874 (EMBL:AF079317) (300 aa) fasta scores: E(): 2.3e-08, 29.59% id in 294 aa, and to Rhizobium sp Plasmid sym pNGR234a hypothetical 34.2 kDa protein Y4eC SW:Y4EC_RHISN (P55426) (307 aa) fasta scores: E(): 6.4e-08, 22.91% id in 323 aa; DNA primase-related protein; hypothetical protein 2157 3284935 pBF9343.02 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209696.1 1147 D 272559 CDS YP_209697.1 60650144 3284904 3264..3515 1 NC_006873.1 contains weak PFAM match to entry PF01402 HTH_4, Helix-turn-helix protein, copG family, score 15.1, E-value 0.00069; putative DNA-binding protein 3515 3284904 pBF9343.03 Bacteroides fragilis NCTC 9343 putative DNA-binding protein YP_209697.1 3264 D 272559 CDS YP_209698.1 60650145 3284931 3580..3798 1 NC_006873.1 no significant database matches; hypothetical protein 3798 3284931 pBF9343.04 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209698.1 3580 D 272559 CDS YP_209699.1 60650146 3284918 3830..4168 1 NC_006873.1 no significant database matches; hypothetical protein 4168 3284918 pBF9343.05 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209699.1 3830 D 272559 CDS YP_209700.1 60650147 3284924 4193..4411 1 NC_006873.1 no significant database matches; hypothetical protein 4411 3284924 pBF9343.06 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209700.1 4193 D 272559 CDS YP_209701.1 60650148 3284900 4429..4737 1 NC_006873.1 no significant database matches; hypothetical protein 4737 3284900 pBF9343.07 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209701.1 4429 D 272559 CDS YP_209702.1 60650149 3284901 4748..4969 1 NC_006873.1 no significant database matches; hypothetical protein 4969 3284901 pBF9343.08 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209702.1 4748 D 272559 CDS YP_209703.1 60650150 3284943 5036..5527 1 NC_006873.1 no significant database matches; hypothetical protein 5527 3284943 pBF9343.09 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209703.1 5036 D 272559 CDS YP_209704.1 60650151 3284923 5517..5729 1 NC_006873.1 no significant database matches; hypothetical protein 5729 3284923 pBF9343.10 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209704.1 5517 D 272559 CDS YP_209705.1 60650152 3284899 5741..5899 1 NC_006873.1 no database matches; putative integral membrane protein 5899 3284899 pBF9343.11 Bacteroides fragilis NCTC 9343 putative integral membrane protein YP_209705.1 5741 D 272559 CDS YP_209706.1 60650153 3284934 5893..7050 1 NC_006873.1 Similar to Neisseria gonorrhoeae Plasmid pFA3 replication protein SW:REPA_NEIGO (P17492) (328 aa) fasta scores: E(): 1.1e-07, 26.8% id in 250 aa; putative replication protein 7050 3284934 pBF9343.12 Bacteroides fragilis NCTC 9343 putative replication protein YP_209706.1 5893 D 272559 CDS YP_209707.1 60650154 3284920 8217..8573 1 NC_006873.1 Low similarity to Streptococcus pneumoniae Tn5252, ORF9 protein SP1055 TR:Q97QY7 (EMBL:AE007407) (121 aa) fasta scores: E(): 0.00077, 31.62% id in 117 aa, and to Pasteurella multocida Plasmid pIG1 and Plasmid pMHSCS1 mobilization protein MbeCY or MobC TR:Q51926 (EMBL:U57647) (101 aa) fasta scores: E(): 0.022, 30.61% id in 98 aa; putative mobilization protein 8573 3284920 pBF9343.13 Bacteroides fragilis NCTC 9343 putative mobilization protein YP_209707.1 8217 D 272559 CDS YP_209708.1 60650155 3284929 9008..10570 1 NC_006873.1 Low similarity to the N-terminal region of Bacteroides thetaiotaomicron conjugative transposon CTnDOT hypothetical 46.7 kDa protein TR:Q9F6U9 (EMBL:AF289050) (415 aa) fasta scores: E(): 0.00013, 23.21% id in 336 aa, to Bacteroides fragilis transposon Tn4399 MocA TR:Q56424 (EMBL:L20975) (318 aa) fasta scores: E(): 0.004, 24.32% id in 296 aa, to Microscilla spPRE1 Plasmid pSD15 MS155, putative mobilization protein TR:Q93P76 (EMBL:AF339846) (470 aa) fasta scores: E(): 0.021, 20.22% id in 440 aa, and to Staphylococcus aureus Plasmid pC223 Rlx protein SW:RLX3_STAAU (P14491) (330 aa) fasta scores: E(): 0.062, 27.23% id in 224 aa; putative mobilization protein 10570 3284929 pBF9343.14 Bacteroides fragilis NCTC 9343 putative mobilization protein YP_209708.1 9008 D 272559 CDS YP_209709.1 60650156 3284932 10586..11209 1 NC_006873.1 Similar to Chlorobium limicola Plasmid pCL1 hypothetical 22.9 kDa protein Hyp7H TR:P94650 (EMBL:U77780) (209 aa) fasta scores: E(): 1e-05, 32.37% id in 139 aa, and to Mycobacterium celatum plasmid pCLP ParA-like protein TR:Q9XCD0 (EMBL:AF312688) (214 aa) fasta scores: E(): 0.0009, 26.86% id in 134 aa, and to Pseudomonas syringae pv maculicola Plasmid pFKN ParA TR:Q93TE7 (EMBL:AF359557) (216 aa) fasta scores: E(): 0.0021, 25.34% id in 217 aa; putative ParA-related protein 11209 3284932 pBF9343.15 Bacteroides fragilis NCTC 9343 putative ParA-related protein YP_209709.1 10586 D 272559 CDS YP_209710.1 60650157 3284939 11268..11702 1 NC_006873.1 no significant database matches; hypothetical protein 11702 3284939 pBF9343.16 Bacteroides fragilis NCTC 9343 hypothetical protein YP_209710.1 11268 D 272559 CDS YP_209711.1 60650158 3284915 complement(12009..12395) 1 NC_006873.1 Low similarity to Clostridium acetobutylicum predicted phage related transcriptional regulator CAC1947 TR:Q97HR1 (EMBL:AE007699) (123 aa) fasta scores: E(): 0.23, 31.81% id in 110 aa, and to Bacteriophage D3 repressor protein CI SW:RPC1_BPD3 (Q37906) (223 aa) fasta scores: E(): 1.4, 40.42% id in 47 aa; putative regulatory protein 12395 3284915 pBF9343.17c Bacteroides fragilis NCTC 9343 putative regulatory protein YP_209711.1 12009 R 272559 CDS YP_209712.1 60650159 3284942 complement(12388..14343) 1 NC_006873.1 Similar to Bacteroides thetaiotaomicron conjugative transposon CTnDOT hypothetical 26.8 kDa protein TR:Q9F6V0 (EMBL:AF289050) (234 aa) fasta scores: E(): 1.1e-19, 33.61% id in 238 aa, and to Bacteroides fragilis mobilization protein C MobC TR:Q9ZF54 (EMBL:AF118243) (534 aa) fasta scores: E(): 1.7e-12, 24.87% id in 394 aa, and to Lactococcus lactis TrsK protein TR:O87219 (EMBL:AE001272) (530 aa) fasta scores: E(): 0.00025, 24.48% id in 388 aa; putative plasmid transfer protein 14343 3284942 pBF9343.18c Bacteroides fragilis NCTC 9343 putative plasmid transfer protein YP_209712.1 12388 R 272559 CDS YP_209713.1 60650160 3284908 complement(14745..15302) 1 NC_006873.1 no significant database matches; hypothetical protein 15302 3284908 pBF9343.20c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209713.1 14745 R 272559 CDS YP_209714.1 60650161 3284926 complement(15268..15540) 1 NC_006873.1 no significant database matches; hypothetical protein 15540 3284926 pBF9343.21c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209714.1 15268 R 272559 CDS YP_209715.1 60650162 3284927 complement(15531..15803) 1 NC_006873.1 Similar to Bacillus halodurans DNA-binding protein HU-1 Hup1 or BH1309 SW:DBH1_BACHD (Q9KDA5) (90 aa) fasta scores: E(): 1.3e-06, 40% id in 85 aa, and to Bacillus stearothermophilus, DNA-binding protein HU Hup or Hbs or HbsU SW:DBH_BACST (P02346) (90 aa) fasta scores: E(): 1.5e-06, 40.96% id in 83 aa, and to Myxococcus xanthus integration host factor alpha-subunit IhfA or HimA SW:IHFA_MYXXA (Q9K4Q3) (129 aa) fasta scores: E(): 3.2e-06, 38.88% id in 90 aa; putative HU-like DNA binding protein 15803 3284927 pBF9343.22c Bacteroides fragilis NCTC 9343 putative HU-like DNA binding protein YP_209715.1 15531 R 272559 CDS YP_209716.1 60650163 3284921 complement(15821..16174) 1 NC_006873.1 no significant database matches; hypothetical protein 16174 3284921 pBF9343.23c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209716.1 15821 R 272559 CDS YP_209717.1 60650164 3284919 complement(16171..17007) 1 NC_006873.1 Similar to C-terminus of Bacillus anthracis DNA topoisomerase I TopX or Top1 or Pxo1-142 SW:TOP1_BACAN (P40114) (887 aa) fasta scores: E(): 8e-08, 28.1% id in 274 aa; putative topoisomerase-related protein 17007 3284919 pBF9343.24c Bacteroides fragilis NCTC 9343 putative topoisomerase-related protein YP_209717.1 16171 R 272559 CDS YP_209718.1 60650165 3284936 complement(17008..17712) 1 NC_006873.1 no significant database matches; hypothetical protein 17712 3284936 pBF9343.25c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209718.1 17008 R 272559 CDS YP_209719.1 60650166 3284930 complement(17693..18196) 1 NC_006873.1 Similar to Proteus vulgaris conserved hypothetical protein ORF137 SWALL:Q8L2A0 (EMBL:AP004237) (151 aa) fasta scores: E(): 2.8e-05, 22.36% id in 152 aa; putative integral membrane protein 18196 3284930 pBF9343.26c Bacteroides fragilis NCTC 9343 putative integral membrane protein YP_209719.1 17693 R 272559 CDS YP_209720.1 60650167 3284910 complement(18193..19302) 1 NC_006873.1 Similar to the N-terminal region of Bacteroides thetaiotaomicron hypothetical protein BT1940 SWALL:Q8A6E4 (EMBL:AE016934) (536 aa) fasta scores: E(): 5.4e-22, 31.16% id in 385 aa; hypothetical protein 19302 3284910 pBF9343.27c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209720.1 18193 R 272559 CDS YP_209721.1 60650168 3284933 complement(19307..20866) 1 NC_006873.1 no significant database matches; putative integral membrane protein 20866 3284933 pBF9343.28c Bacteroides fragilis NCTC 9343 putative integral membrane protein YP_209721.1 19307 R 272559 CDS YP_209722.1 60650169 3284944 complement(20868..21587) 1 NC_006873.1 no significant database matches; hypothetical protein 21587 3284944 pBF9343.29c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209722.1 20868 R 272559 CDS YP_209723.1 60650170 3284906 21628..22293 1 NC_006873.1 Similar to the C-terminal region of Rhizobium loti hypothetical protein MLL8577 TR:Q982M3 (EMBL:AP003014) (434 aa) fasta scores: E(): 1.5e-13, 35.84% id in 159 aa, of Borrelia burgdorferi hypothetical protein BB0761 TR:O51702 (EMBL:AE001176) (295 aa) fasta scores: E(): 4.1e-13, 33.69% id in 187 aa, and of Caulobacter crescentus peptidase, M23/M37 family CC1872 TR:Q9A754 (EMBL:AE005861) (383 aa) fasta scores: E(): 2.3e-11, 31.79% id in 173 aa; putative secreted peptidase 22293 3284906 pBF9343.30 Bacteroides fragilis NCTC 9343 putative secreted peptidase YP_209723.1 21628 D 272559 CDS YP_209724.1 60650171 3284925 complement(22340..23206) 1 NC_006873.1 Similar to Streptococcus pneumoniae hypothetical protein SP1051 TR:Q97QZ1 (EMBL:AE007407) (253 aa) fasta scores: E(): 8.6e-12, 30.87% id in 230 aa, and to Enterococcus hirae hypothetical 32.4 kDa protein TR:Q93CM1 (EMBL:AF406971) (286 aa) fasta scores: E(): 7.7e-10, 27.24% id in 290 aa; hypothetical protein 23206 3284925 pBF9343.31c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209724.1 22340 R 272559 CDS YP_209725.1 60650172 3284911 complement(23193..23453) 1 NC_006873.1 no significant database matches; hypothetical protein 23453 3284911 pBF9343.32c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209725.1 23193 R 272559 CDS YP_209726.1 60650173 3284909 complement(23475..23954) 1 NC_006873.1 Similar to Clostridium tetani conserved protein CTC02408 SWALL:Q891G8 (EMBL:AE015944) (160 aa) fasta scores: E(): 1.3e-08, 39.07% id in 151 aa , and to Lactococcus lactis hypothetical protein YhhA or LL0759 TR:Q9CHH2 (EMBL:AE006309) (432 aa) fasta scores: E(): 0.0036, 22.46% id in 138 aa; hypothetical protein 23954 3284909 pBF9343.33c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209726.1 23475 R 272559 CDS YP_209727.1 60650174 3284916 complement(23951..24400) 1 NC_006873.1 no significant database matches; hypothetical protein 24400 3284916 pBF9343.34c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209727.1 23951 R 272559 CDS YP_209728.1 60650175 3284941 complement(25508..26149) 1 NC_006873.1 Similar to Porphyromonas gingivalis immunogenic 23 kDa lipoprotein PG3 TR:Q9XCA4 (EMBL:AF145799) (223 aa) fasta scores: E(): 1e-11, 29.24% id in 212 aa, and to Bordetella avium outer membrane protein a precursor OmpA SW:OMPA_BORAV (Q05146) (194 aa) fasta scores: E(): 1.3e-09, 38.28% id in 128 aa; putative outer membrane protein 26149 3284941 pBF9343.35c Bacteroides fragilis NCTC 9343 putative outer membrane protein YP_209728.1 25508 R 272559 CDS YP_209729.1 60650176 3284902 complement(26152..26811) 1 NC_006873.1 no significant database matches; hypothetical protein 26811 3284902 pBF9343.36c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209729.1 26152 R 272559 CDS YP_209730.1 60650177 3284917 complement(26814..27317) 1 NC_006873.1 no significant database matches; hypothetical protein 27317 3284917 pBF9343.37c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209730.1 26814 R 272559 CDS YP_209731.1 60650178 3284937 complement(27330..28169) 1 NC_006873.1 Similar to Bacteroides thetaiotaomicron TraN-like p5482_16 SWALL:Q8ABY2 (EMBL:AY171301) (365 aa) fasta scores: E(): 1.4e-07, 28.45% id in 253 aa, and to Bacteroides thetaiotaomicron conjugative transposon CTnDOT TraN TR:Q9F6T5 (EMBL:AF289050) (329 aa) fasta scores: E(): 1.1e-06, 26.51% id in 264 aa; putative plasmid transfer protein 28169 3284937 pBF9343.38c Bacteroides fragilis NCTC 9343 putative plasmid transfer protein YP_209731.1 27330 R 272559 CDS YP_209732.1 60650179 3284940 complement(28171..29280) 1 NC_006873.1 Similar to Bacteroides thetaiotaomicron conjugative transposon CTnDOT TraM TR:Q9F6T6 (EMBL:AF289050) (452 aa) fasta scores: E(): 2.3e-07, 25.41% id in 425 aa; putative plasmid transfer protein 29280 3284940 pBF9343.39c Bacteroides fragilis NCTC 9343 putative plasmid transfer protein YP_209732.1 28171 R 272559 CDS YP_209733.1 60650180 3284912 complement(29284..29715) 1 NC_006873.1 no significant database matches; putative integral membrane protein 29715 3284912 pBF9343.40c Bacteroides fragilis NCTC 9343 putative integral membrane protein YP_209733.1 29284 R 272559 CDS YP_209734.1 60650181 3284928 complement(29715..30329) 1 NC_006873.1 Similar to Bacteroides thetaiotaomicron conjugative transposon CTnDOT TraK TR:Q9F6T8 (EMBL:AF289050) (207 aa) fasta scores: E(): 4.5e-17, 30.96% id in 197 aa; putative plasmid transfer protein 30329 3284928 pBF9343.41c Bacteroides fragilis NCTC 9343 putative plasmid transfer protein YP_209734.1 29715 R 272559 CDS YP_209735.1 60650182 3284913 complement(30362..31384) 1 NC_006873.1 Similar to Bacteroides thetaiotaomicron conjugative transposon CTnDOT TraJ TR:Q9F6T9 (EMBL:AF289050) (334 aa) fasta scores: E(): 3.3e-10, 25.07% id in 343 aa; putative plasmid transfer protein 31384 3284913 pBF9343.42c Bacteroides fragilis NCTC 9343 putative plasmid transfer protein YP_209735.1 30362 R 272559 CDS YP_209736.1 60650183 3284903 complement(31377..32033) 1 NC_006873.1 no significant database matches; hypothetical protein 32033 3284903 pBF9343.43c Bacteroides fragilis NCTC 9343 hypothetical protein YP_209736.1 31377 R 272559 CDS YP_209737.1 60650184 3284914 complement(32035..32739) 1 NC_006873.1 Similar to Bacteroides thetaiotaomicron conjugative transposon CTnDOT TraI TR:Q9F6U0 (EMBL:AF289050) (209 aa) fasta scores: E(): 2.7, 21.19% id in 217 aa; putative plasmid transfer protein 32739 3284914 pBF9343.44c Bacteroides fragilis NCTC 9343 putative plasmid transfer protein YP_209737.1 32035 R 272559 CDS YP_209738.1 60650185 3284907 complement(32721..35561) 1 NC_006873.1 Previously sequenced as Bacteroides fragilis plasmid pBF4 BctA protein TR:P70888 (EMBL:U63096) (946 aa) fasta scores: E(): 0, 99.15% id in 946 aa, and similar to Bacteroides thetaiotaomicron conjugative transposon CTnDOT TraG TR:Q9F6U2 (EMBL:AF289050) (838 aa) fasta scores: E(): 4.1e-32, 30.51% id in 898 aa; plasmid transfer protein 35561 bctA 3284907 bctA Bacteroides fragilis NCTC 9343 plasmid transfer protein YP_209738.1 32721 R 272559 CDS YP_209739.1 60650186 3284922 complement(35567..35866) 1 NC_006873.1 Very low similarity to Bacteroides thetaiotaomicron conjugative transposon CTnDOT TraF TR:Q9F6U3 (EMBL:AF289050) (110 aa) fasta scores: E(): 7.5, 22.11% id in 104 aa; putative plasmid transfer protein 35866 3284922 pBF9343.46c Bacteroides fragilis NCTC 9343 putative plasmid transfer protein YP_209739.1 35567 R 272559 CDS YP_209740.1 60650187 3284945 complement(35868..36182) 1 NC_006873.1 Similar to Bacteroides thetaiotaomicron conjugative transposon CTnDOT TraE TR:Q9F6U4 (EMBL:AF289050) (105 aa) fasta scores: E(): 1.9e-11, 37.5% id in 104 aa; putative plasmid transfer protein 36182 3284945 pBF9343.47c Bacteroides fragilis NCTC 9343 putative plasmid transfer protein YP_209740.1 35868 R 272559 CDS YP_209741.1 60650188 3284905 complement(36202..36543) 1 NC_006873.1 no significant database matches; putative integral membrane protein 36543 3284905 pBF9343.48c Bacteroides fragilis NCTC 9343 putative integral membrane protein YP_209741.1 36202 R 272559 CDS