-- dump date 20240506_002346 -- class Genbank::Contig -- table contig_comment -- id comment NC_014219.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001791.1.REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John StolzREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake CaliforniaREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USAREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Alkalophile, Arsenic metabolizer,REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Alkalophile, Arsenic metabolizer, Respiratory arsenate reductaseREFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Alkalophile, Arsenic metabolizer, Respiratory arsenate reductase ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001791.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000241 Source DNA and bacteria available from John Stolz (stozl@mailbox.cr.duq.edu) Contacts: John Stolz (stolz@mailbox.cr.duq.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/19/2024 00:58:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,396 CDSs (total) :: 3,301 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 95 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 68 ncRNAs :: 5 Pseudo Genes (total) :: 46 CDSs (without protein) :: 46 Pseudo Genes (ambiguous residues) :: 0 of 46 Pseudo Genes (frameshifted) :: 20 of 46 Pseudo Genes (incomplete) :: 19 of 46 Pseudo Genes (internal stop) :: 11 of 46 Pseudo Genes (multiple problems) :: 3 of 46 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Bacillus selenitireducens MLS-10 Culture Collection ID :: ATCC 700615 GOLD Stamp ID :: Gi00921 Greengenes ID :: 250140 Isolation Site :: Anoxic muds of Mono Lake California Isolation Country :: USA Latitude :: 37.986853 Longitude :: -119.045711 Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Alkalophile, Arsenic metabolizer, Respiratory arsenate reductase ##Metadata-END## COMPLETENESS: full length.