-- dump date   	20140618_214509
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002364856.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_002364857.1	binds the polymerase to DNA and acts as a sliding clamp
YP_002364858.1	identified by match to protein family HMM TIGR00362; match to protein family HMM TIGR02988
YP_002364859.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_002364860.1	negatively supercoils closed circular double-stranded DNA
YP_002364861.1	negatively supercoils closed circular double-stranded DNA
YP_002364863.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_002364864.1	identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943
YP_002364865.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_002364866.1	with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate
YP_002364867.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002364868.1	identified by glimmer
YP_002364869.1	identified by match to protein family HMM PF01712
YP_002364870.1	identified by match to protein family HMM PF01712
YP_002364871.1	identified by match to protein family HMM PF00857
YP_002364872.1	identified by match to protein family HMM PF00383
YP_002364873.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_002364874.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_002364875.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_002364877.1	identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862
YP_002364879.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03711
YP_002364880.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_002364881.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_002364882.1	identified by match to protein family HMM PF04468
YP_002364883.1	in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA
YP_002364885.1	identified by match to protein family HMM PF01541
YP_002364886.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_002364887.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_002364888.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002364889.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_002364890.1	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334
YP_002364891.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002364892.1	identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855
YP_002364893.1	identified by match to protein family HMM PF06257
YP_002364895.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_002364896.1	identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743
YP_002364897.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_002364898.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_002364899.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_002364900.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_002364901.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002364903.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_002364904.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851
YP_002364905.1	identified by match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002364906.1	identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444
YP_002364907.1	identified by match to protein family HMM PF01479
YP_002364908.1	identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892
YP_002364909.1	identified by match to protein family HMM PF09578; match to protein family HMM TIGR02893
YP_002364910.1	identified by match to protein family HMM PF04977
YP_002364911.1	identified by match to protein family HMM PF00575
YP_002364912.1	identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865
YP_002364913.1	identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_002364914.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_002364915.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_002364916.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_002364917.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_002364918.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_002364919.1	identified by match to protein family HMM PF00425; match to protein family HMM PF04715
YP_002364920.1	amphibolic enzyme subunit from Bacillus subtilis performs both in anthranilate and para-aminobenzoate synthesis
YP_002364921.1	catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate
YP_002364922.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_002364923.1	identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526
YP_002364924.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_002364925.1	identified by match to protein family HMM PF01381
YP_002364926.1	identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_002364927.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_002364928.1	identified by match to protein family HMM PF05848
YP_002364929.1	identified by match to protein family HMM PF02151
YP_002364930.1	identified by match to protein family HMM PF00217
YP_002364931.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_002364932.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_002364933.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_002364934.1	identified by match to protein family HMM PF01850; match to protein family HMM PF01938
YP_002364935.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_002364936.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_002364937.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002364938.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_002364939.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002364940.1	identified by match to protein family HMM PF00636
YP_002364941.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_002364942.1	identified by match to protein family HMM PF05991
YP_002364943.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002364944.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002364945.1	Modulates Rho-dependent transcription termination
YP_002364946.1	binds directly to 23S ribosomal RNA
YP_002364947.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002364948.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002364949.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002364950.1	identified by match to protein family HMM PF05175
YP_002364951.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002364952.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_002364953.1	identified by match to protein family HMM PF01248
YP_002364954.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002364955.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002364956.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002364957.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002364958.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002364959.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002364960.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002364961.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002364962.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002364963.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002364964.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002364965.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002364966.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002364967.1	one of the stabilizing components for the large ribosomal subunit
YP_002364968.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002364969.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002364970.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002364971.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002364972.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_002364973.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002364974.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002364975.1	binds 5S rRNA along with protein L5 and L25
YP_002364976.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002364977.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_002364978.1	late assembly protein
YP_002364979.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002364980.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_002364981.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_002364982.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002364983.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_002364984.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002364985.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002364986.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002364987.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002364988.1	with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene
YP_002364989.1	with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene
YP_002364990.1	identified by match to protein family HMM PF02361
YP_002364991.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002364992.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002364993.1	forms a direct contact with the tRNA during translation
YP_002364995.1	identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883
YP_002364999.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764
YP_002365001.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_002365002.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01229
YP_002365003.1	identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159
YP_002365004.1	identified by match to protein family HMM PF07949
YP_002365005.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_002365006.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_002365008.1	identified by match to protein family HMM PF00326
YP_002365010.1	identified by match to protein family HMM PF04173; match to protein family HMM PF07681
YP_002365011.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002365012.1	identified by match to protein family HMM PF00528
YP_002365013.1	identified by match to protein family HMM PF00005; match to protein family HMM PF09383
YP_002365014.1	identified by match to protein family HMM PF03180
YP_002365015.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002365017.1	identified by match to protein family HMM PF01565
YP_002365020.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_002365022.1	identified by glimmer
YP_002365023.1	identified by match to protein family HMM PF00528
YP_002365024.1	identified by match to protein family HMM PF00528
YP_002365025.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002365026.1	identified by match to protein family HMM PF00005
YP_002365027.1	identified by match to protein family HMM PF00496
YP_002365029.1	identified by match to protein family HMM PF00165
YP_002365032.1	identified by match to protein family HMM PF00496
YP_002365033.1	identified by match to protein family HMM PF00496
YP_002365034.1	identified by match to protein family HMM PF00248
YP_002365035.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002365037.1	identified by match to protein family HMM PF06800
YP_002365038.1	identified by glimmer
YP_002365039.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141
YP_002365040.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_002365041.1	identified by match to protein family HMM PF05930; match to protein family HMM TIGR01764
YP_002365042.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002365043.1	identified by match to protein family HMM PF00892
YP_002365044.1	identified by glimmer
YP_002365045.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_002365046.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002365047.1	identified by match to protein family HMM PF02588
YP_002365048.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002365049.1	identified by glimmer
YP_002365050.1	identified by match to protein family HMM PF01026
YP_002365052.1	identified by match to protein family HMM PF01464
YP_002365055.1	identified by match to protein family HMM PF00005
YP_002365056.1	identified by glimmer
YP_002365057.1	identified by match to protein family HMM PF00496
YP_002365058.1	identified by match to protein family HMM PF00528
YP_002365059.1	identified by match to protein family HMM PF00528
YP_002365060.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002365061.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002365062.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002365065.1	identified by glimmer
YP_002365066.1	identified by glimmer
YP_002365067.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263
YP_002365068.1	identified by match to protein family HMM PF01557
YP_002365069.1	identified by match to protein family HMM PF04209
YP_002365070.1	identified by match to protein family HMM PF00324
YP_002365071.1	identified by match to protein family HMM PF07690
YP_002365072.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002365073.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143
YP_002365074.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_002365075.1	identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629
YP_002365076.1	identified by match to protein family HMM PF01694
YP_002365077.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_002365079.1	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492
YP_002365081.1	identified by match to protein family HMM PF02452
YP_002365082.1	identified by match to protein family HMM PF00575; match to protein family HMM PF09371
YP_002365083.1	identified by glimmer
YP_002365084.1	identified by match to protein family HMM PF03926
YP_002365085.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_002365086.1	identified by match to protein family HMM PF00814
YP_002365087.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_002365088.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_002365089.1	identified by match to protein family HMM PF00005
YP_002365090.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_002365092.1	identified by match to protein family HMM PF02517
YP_002365093.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002365094.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_002365095.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002365096.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_002365097.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002365098.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002365100.1	identified by match to protein family HMM PF01323
YP_002365101.1	identified by match to protein family HMM PF04266
YP_002365102.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002365104.1	identified by match to protein family HMM PF00005
YP_002365105.1	identified by match to protein family HMM PF02518
YP_002365106.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002365108.1	identified by match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002365109.1	identified by match to protein family HMM PF08241
YP_002365110.1	identified by glimmer
YP_002365111.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370
YP_002365112.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002365113.1	identified by match to protein family HMM PF00534; match to protein family HMM PF00535
YP_002365114.1	identified by match to protein family HMM PF00892
YP_002365116.1	identified by glimmer
YP_002365117.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_002365118.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_002365119.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002365120.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002365121.1	With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway
YP_002365122.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002365123.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002365124.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_002365125.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_002365126.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_002365127.1	involved in de novo purine biosynthesis
YP_002365128.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_002365130.1	identified by match to protein family HMM PF01145
YP_002365132.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002365133.1	PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer
YP_002365134.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073
YP_002365135.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_002365136.1	identified by match to protein family HMM PF07537
YP_002365137.1	identified by match to protein family HMM PF01925
YP_002365138.1	catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate
YP_002365139.1	identified by match to protein family HMM PF00857
YP_002365140.1	identified by match to protein family HMM PF00005; match to protein family HMM PF09383
YP_002365141.1	identified by match to protein family HMM PF00528
YP_002365142.1	identified by match to protein family HMM PF03180
YP_002365144.1	identified by glimmer
YP_002365145.1	identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345
YP_002365146.1	identified by match to protein family HMM PF01047
YP_002365148.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_002365149.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002365150.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002365151.1	similar to YegS from E. coli
YP_002365152.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_002365153.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_002365154.1	identified by match to protein family HMM PF00158; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002365155.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780
YP_002365156.1	identified by match to protein family HMM PF00893
YP_002365158.1	identified by match to protein family HMM PF02073
YP_002365159.1	identified by match to protein family HMM PF01522
YP_002365161.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_002365162.1	identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_002365163.1	identified by match to protein family HMM PF01207
YP_002365164.1	identified by match to protein family HMM PF07308
YP_002365165.1	identified by match to protein family HMM PF01863
YP_002365167.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_002365169.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931
YP_002365170.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002365172.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03140
YP_002365173.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137
YP_002365174.1	related protein from Bacillus subtilis functions as methylribose kinase and functions in salvage pathway
YP_002365175.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_002365176.1	catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate
YP_002365177.1	identified by match to protein family HMM PF01032
YP_002365178.1	identified by match to protein family HMM PF01032
YP_002365179.1	identified by match to protein family HMM PF01497
YP_002365180.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_002365181.1	identified by glimmer
YP_002365182.1	identified by match to protein family HMM TIGR01764
YP_002365186.1	identified by glimmer
YP_002365187.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002365188.1	identified by glimmer
YP_002365189.1	identified by match to protein family HMM PF04199
YP_002365192.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002365193.1	identified by match to protein family HMM PF00355; match to protein family HMM PF01266
YP_002365194.1	identified by match to protein family HMM PF00487
YP_002365195.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002365196.1	identified by match to protein family HMM PF00497
YP_002365197.1	identified by match to protein family HMM PF00005
YP_002365198.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002365199.1	identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529
YP_002365200.1	catalyzes the degradation of arginine to citruline and ammonia
YP_002365201.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_002365202.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905
YP_002365203.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_002365204.1	identified by match to protein family HMM PF00027
YP_002365206.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_002365207.1	identified by match to protein family HMM PF00128
YP_002365208.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003
YP_002365209.1	identified by match to protein family HMM PF03372
YP_002365210.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_002365211.1	decatenates replicating daughter chromosomes
YP_002365212.1	identified by glimmer
YP_002365214.1	identified by glimmer
YP_002365216.1	identified by glimmer
YP_002365217.1	identified by match to protein family HMM PF01751
YP_002365218.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_002365219.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_002365220.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB
YP_002365221.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002365222.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF07993; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746
YP_002365223.1	identified by match to protein family HMM PF01910
YP_002365224.1	identified by match to protein family HMM PF00528
YP_002365225.1	identified by match to protein family HMM PF09084
YP_002365226.1	identified by match to protein family HMM PF00005
YP_002365228.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00553; match to protein family HMM PF00704
YP_002365229.1	identified by match to protein family HMM PF09350
YP_002365231.1	identified by glimmer
YP_002365233.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08360
YP_002365234.1	identified by match to protein family HMM PF07690
YP_002365235.1	identified by match to protein family HMM PF01381
YP_002365236.1	identified by match to protein family HMM PF07690
YP_002365237.1	identified by match to protein family HMM PF01663
YP_002365239.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002365240.1	identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167
YP_002365241.1	identified by match to protein family HMM PF00480
YP_002365242.1	identified by match to protein family HMM PF02342
YP_002365243.1	identified by match to protein family HMM PF02342
YP_002365244.1	identified by match to protein family HMM PF02342
YP_002365245.1	identified by match to protein family HMM PF03741
YP_002365247.1	identified by match to protein family HMM PF05816
YP_002365248.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_002365249.1	identified by match to protein family HMM PF06569
YP_002365250.1	identified by match to protein family HMM PF01451
YP_002365252.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_002365253.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_002365254.1	identified by match to protein family HMM PF00892
YP_002365255.1	identified by match to protein family HMM PF07947
YP_002365256.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002365257.1	identified by glimmer
YP_002365258.1	identified by match to protein family HMM PF09335
YP_002365259.1	identified by match to protein family HMM PF00892
YP_002365261.1	identified by match to protein family HMM PF01243
YP_002365262.1	identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; match to protein family HMM TIGR00846
YP_002365264.1	identified by match to protein family HMM PF04055; match to protein family HMM PF08756
YP_002365266.1	identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723
YP_002365267.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884
YP_002365268.1	identified by match to protein family HMM PF00730
YP_002365269.1	identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_002365270.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002365271.1	identified by glimmer
YP_002365272.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR00229
YP_002365274.1	identified by match to protein family HMM PF00324
YP_002365275.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_002365276.1	identified by match to protein family HMM PF01381; match to protein family HMM PF06803
YP_002365277.1	identified by match to protein family HMM TIGR02840
YP_002365278.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002365280.1	catalyzes the formation of glutamate from glutamine
YP_002365281.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_002365282.1	identified by glimmer
YP_002365283.1	identified by match to protein family HMM PF00144
YP_002365284.1	identified by glimmer
YP_002365286.1	identified by match to protein family HMM PF00535
YP_002365287.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_002365288.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_002365289.1	identified by match to protein family HMM PF00535
YP_002365290.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255
YP_002365291.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493
YP_002365292.1	processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids
YP_002365295.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_002365296.1	identified by match to protein family HMM PF01370; match to protein family HMM PF08338; match to protein family HMM TIGR01777
YP_002365297.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_002365298.1	identified by match to protein family HMM PF08838
YP_002365299.1	identified by glimmer
YP_002365300.1	SASP K; found in the forespore compartment
YP_002365302.1	identified by match to protein family HMM PF04307
YP_002365303.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084
YP_002365305.1	identified by match to protein family HMM PF04259; match to protein family HMM TIGR01442
YP_002365308.1	identified by glimmer
YP_002365309.1	identified by match to protein family HMM PF04167
YP_002365310.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002365311.1	identified by match to protein family HMM PF06081
YP_002365312.1	identified by glimmer
YP_002365313.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898
YP_002365314.1	converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate
YP_002365315.1	identified by match to protein family HMM PF00005
YP_002365316.1	identified by match to protein family HMM PF06182
YP_002365317.1	identified by match to protein family HMM PF06182
YP_002365318.1	identified by match to protein family HMM PF07885
YP_002365319.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_002365320.1	identified by match to protein family HMM PF01475
YP_002365321.1	identified by match to protein family HMM PF00583
YP_002365323.1	identified by match to protein family HMM PF00589
YP_002365325.1	identified by glimmer
YP_002365326.1	identified by glimmer
YP_002365327.1	identified by glimmer
YP_002365328.1	identified by glimmer
YP_002365329.1	identified by glimmer
YP_002365330.1	identified by match to protein family HMM PF04586; match to protein family HMM PF05065; match to protein family HMM TIGR01543; match to protein family HMM TIGR01554
YP_002365331.1	identified by glimmer
YP_002365332.1	identified by glimmer
YP_002365333.1	identified by glimmer
YP_002365335.1	identified by glimmer
YP_002365336.1	identified by glimmer
YP_002365338.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_002365339.1	identified by match to protein family HMM PF00293
YP_002365340.1	identified by match to protein family HMM PF00912
YP_002365341.1	identified by match to protein family HMM PF01323
YP_002365342.1	identified by match to protein family HMM PF00037; match to protein family HMM PF03130; match to protein family HMM PF08331; match to protein family HMM TIGR00276
YP_002365344.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185
YP_002365345.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002365346.1	identified by match to protein family HMM PF06798; match to protein family HMM PF08298
YP_002365347.1	identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877
YP_002365348.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05031; match to protein family HMM TIGR01167
YP_002365349.1	identified by match to protein family HMM PF00583
YP_002365350.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_002365351.1	identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453
YP_002365352.1	identified by match to protein family HMM PF01957
YP_002365353.1	identified by match to protein family HMM PF01145
YP_002365354.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_002365355.1	identified by match to protein family HMM PF00989; match to protein family HMM PF02518
YP_002365356.1	identified by match to protein family HMM PF00072
YP_002365357.1	identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00784
YP_002365360.1	identified by match to protein family HMM PF00023
YP_002365361.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002365362.1	identified by match to protein family HMM PF04309
YP_002365363.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_002365364.1	identified by match to protein family HMM PF00528
YP_002365365.1	identified by match to protein family HMM PF00528
YP_002365366.1	identified by match to protein family HMM PF01547
YP_002365367.1	identified by match to protein family HMM PF00149
YP_002365368.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002365369.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002365370.1	identified by glimmer
YP_002365371.1	identified by glimmer
YP_002365373.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_002365374.1	C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration
YP_002365375.1	identified by match to protein family HMM PF00072
YP_002365376.1	identified by match to protein family HMM PF03390
YP_002365377.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_002365379.1	identified by match to protein family HMM PF00892
YP_002365380.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002365381.1	identified by match to protein family HMM PF00583
YP_002365382.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002365383.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002365385.1	identified by match to protein family HMM PF00583
YP_002365386.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_002365387.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_002365388.1	identified by match to protein family HMM PF07849
YP_002365389.1	identified by match to protein family HMM PF03009
YP_002365390.1	identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_002365391.1	identified by match to protein family HMM PF00324
YP_002365393.1	identified by match to protein family HMM PF01022
YP_002365394.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_002365395.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_002365396.1	identified by match to protein family HMM PF00515; match to protein family HMM PF01381; match to protein family HMM PF07719
YP_002365397.1	identified by glimmer
YP_002365398.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002365399.1	identified by match to protein family HMM PF09335
YP_002365401.1	identified by glimmer
YP_002365402.1	identified by match to protein family HMM PF04294
YP_002365403.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002365404.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_002365405.1	identified by match to protein family HMM PF00903
YP_002365406.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_002365407.1	catalyzes the formation of fumarate from aspartate
YP_002365408.1	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_002365409.1	identified by match to protein family HMM PF01022
YP_002365410.1	SASP H; spore coat; expressed in forespore compartment
YP_002365411.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_002365412.1	identified by match to protein family HMM PF01497
YP_002365413.1	identified by match to protein family HMM PF01032
YP_002365414.1	identified by match to protein family HMM PF01032
YP_002365415.1	identified by match to protein family HMM PF00005
YP_002365416.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002365417.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_002365418.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993
YP_002365419.1	identified by match to protein family HMM PF00293
YP_002365421.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_002365422.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_002365423.1	identified by glimmer
YP_002365424.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002365425.1	identified by match to protein family HMM PF00324
YP_002365426.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404
YP_002365427.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992
YP_002365428.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403
YP_002365429.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002365430.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002365431.1	identified by match to protein family HMM PF03323
YP_002365432.1	identified by match to protein family HMM PF01636
YP_002365433.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002365434.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002365435.1	identified by match to protein family HMM PF00005
YP_002365436.1	identified by match to protein family HMM PF00497
YP_002365437.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002365438.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002365439.1	identified by match to protein family HMM PF00324
YP_002365440.1	identified by match to protein family HMM PF02566
YP_002365441.1	identified by match to protein family HMM PF01230
YP_002365442.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002365444.1	identified by match to protein family HMM PF08279
YP_002365445.1	identified by match to protein family HMM PF01872
YP_002365446.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002365447.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002365449.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_002365450.1	identified by match to protein family HMM PF00582
YP_002365451.1	identified by glimmer
YP_002365452.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881
YP_002365453.1	identified by glimmer
YP_002365454.1	identified by match to protein family HMM PF01047
YP_002365455.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002365456.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002365457.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152
YP_002365458.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_002365459.1	identified by match to protein family HMM PF00005
YP_002365460.1	identified by match to protein family HMM PF02653
YP_002365461.1	identified by match to protein family HMM PF00532
YP_002365462.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_002365463.1	identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296
YP_002365464.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002365465.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002365466.1	identified by match to protein family HMM PF07885
YP_002365467.1	identified by match to protein family HMM PF00882
YP_002365468.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR03395
YP_002365470.1	identified by match to protein family HMM PF01565; match to protein family HMM PF04030; match to protein family HMM TIGR01679
YP_002365471.1	identified by match to protein family HMM PF04892
YP_002365472.1	identified by glimmer
YP_002365474.1	phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002365475.1	identified by match to protein family HMM PF00015
YP_002365476.1	identified by match to protein family HMM PF06725
YP_002365477.1	identified by match to protein family HMM PF01381
YP_002365479.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_002365481.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_002365482.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002365485.1	identified by match to protein family HMM PF00324
YP_002365486.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_002365487.1	identified by match to protein family HMM PF00376
YP_002365488.1	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_002365489.1	identified by match to protein family HMM PF01381
YP_002365490.1	identified by glimmer
YP_002365491.1	identified by match to protein family HMM PF00583
YP_002365492.1	identified by glimmer
YP_002365493.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254
YP_002365494.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02901
YP_002365495.1	identified by match to protein family HMM PF00510; match to protein family HMM TIGR02897
YP_002365496.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02882
YP_002365497.1	identified by match to protein family HMM PF02790; match to protein family HMM TIGR01432
YP_002365498.1	identified by match to protein family HMM PF00324
YP_002365500.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002365502.1	identified by match to protein family HMM PF00474
YP_002365503.1	identified by match to protein family HMM PF03323
YP_002365504.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002365505.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002365506.1	identified by glimmer
YP_002365508.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231
YP_002365509.1	identified by match to protein family HMM PF04023
YP_002365510.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136
YP_002365511.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_002365512.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_002365514.1	identified by match to protein family HMM PF00873
YP_002365515.1	identified by match to protein family HMM PF00571
YP_002365516.1	identified by glimmer
YP_002365518.1	identified by match to protein family HMM PF01551; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_002365519.1	identified by match to protein family HMM PF03070
YP_002365520.1	identified by match to protein family HMM PF00005
YP_002365521.1	identified by match to protein family HMM PF00528
YP_002365522.1	identified by match to protein family HMM PF09084
YP_002365523.1	regulates the production of extracellular enzymes
YP_002365524.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02352
YP_002365525.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_002365526.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_002365527.1	catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways
YP_002365528.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_002365529.1	identified by glimmer
YP_002365530.1	identified by glimmer
YP_002365531.1	identified by glimmer
YP_002365532.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_002365533.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_002365534.1	one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex
YP_002365535.1	identified by match to protein family HMM PF00582; match to protein family HMM PF02702
YP_002365536.1	identified by match to protein family HMM PF07690
YP_002365537.1	identified by match to protein family HMM PF01047
YP_002365538.1	identified by match to protein family HMM PF01734
YP_002365539.1	identified by match to protein family HMM PF00860
YP_002365540.1	identified by match to protein family HMM PF00106
YP_002365541.1	identified by match to protein family HMM PF03734
YP_002365543.1	identified by match to protein family HMM PF00294
YP_002365544.1	identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322
YP_002365545.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01996
YP_002365546.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002365547.1	identified by match to protein family HMM PF07561
YP_002365548.1	identified by match to protein family HMM PF00085
YP_002365549.1	identified by match to protein family HMM PF02600
YP_002365552.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002365553.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002365554.1	identified by match to protein family HMM PF03323
YP_002365556.1	identified by match to protein family HMM PF00881
YP_002365557.1	identified by match to protein family HMM PF04293
YP_002365558.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002365559.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002365560.1	identified by match to protein family HMM PF01047
YP_002365561.1	identified by glimmer
YP_002365562.1	identified by glimmer
YP_002365563.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR03385
YP_002365564.1	identified by match to protein family HMM PF02583
YP_002365565.1	identified by match to protein family HMM PF00581; match to protein family HMM PF01206
YP_002365566.1	identified by match to protein family HMM PF00753
YP_002365567.1	identified by match to protein family HMM PF01206
YP_002365568.1	identified by match to protein family HMM PF00581
YP_002365570.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002365571.1	identified by match to protein family HMM PF01925
YP_002365572.1	identified by glimmer
YP_002365573.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002365574.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823
YP_002365575.1	identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704
YP_002365576.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07690
YP_002365577.1	identified by match to protein family HMM PF05913
YP_002365578.1	identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279
YP_002365579.1	identified by match to protein family HMM PF02255
YP_002365580.1	identified by match to protein family HMM PF02302
YP_002365581.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410
YP_002365582.1	identified by glimmer
YP_002365583.1	identified by match to protein family HMM PF05913
YP_002365584.1	identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239
YP_002365585.1	identified by match to protein family HMM PF02687
YP_002365586.1	identified by match to protein family HMM PF00005
YP_002365587.1	identified by match to protein family HMM TIGR01730
YP_002365588.1	identified by match to protein family HMM PF09529; match to protein family HMM TIGR02206
YP_002365589.1	identified by match to protein family HMM PF00528
YP_002365590.1	identified by match to protein family HMM PF00528
YP_002365591.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002365592.1	identified by match to protein family HMM PF05067
YP_002365597.1	identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772
YP_002365598.1	identified by match to protein family HMM PF06803
YP_002365599.1	identified by match to protein family HMM PF09335
YP_002365600.1	identified by glimmer
YP_002365601.1	identified by glimmer
YP_002365603.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00149
YP_002365605.1	identified by glimmer
YP_002365606.1	identified by match to protein family HMM PF00324
YP_002365607.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00932
YP_002365608.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002365609.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_002365610.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_002365611.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_002365612.1	identified by match to protein family HMM PF05913
YP_002365613.1	identified by match to protein family HMM PF07681
YP_002365616.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151
YP_002365617.1	identified by match to protein family HMM PF01037
YP_002365618.1	catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate
YP_002365619.1	identified by match to protein family HMM PF00106
YP_002365620.1	identified by match to protein family HMM PF00376; match to protein family HMM PF09278
YP_002365621.1	identified by match to protein family HMM PF00893
YP_002365622.1	identified by match to protein family HMM PF00893
YP_002365623.1	identified by match to protein family HMM PF00440
YP_002365624.1	identified by match to protein family HMM PF00083; match to protein family HMM PF05978; match to protein family HMM PF07690
YP_002365625.1	identified by match to protein family HMM PF01047; match to protein family HMM PF01638
YP_002365626.1	identified by match to protein family HMM PF07366
YP_002365627.1	identified by match to protein family HMM PF02525
YP_002365629.1	identified by match to protein family HMM PF00496
YP_002365630.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR03609
YP_002365632.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_002365633.1	identified by match to protein family HMM PF00199; match to protein family HMM PF06628
YP_002365634.1	identified by match to protein family HMM PF05975
YP_002365635.1	identified by match to protein family HMM PF00324
YP_002365638.1	identified by match to protein family HMM PF00171
YP_002365639.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002365640.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002365641.1	identified by match to protein family HMM PF00497
YP_002365642.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002365643.1	identified by match to protein family HMM PF00005
YP_002365644.1	identified by match to protein family HMM PF00269
YP_002365648.1	identified by match to protein family HMM PF04286
YP_002365649.1	identified by match to protein family HMM PF06133
YP_002365652.1	identified by match to protein family HMM PF08006
YP_002365653.1	catalyzes the formation of 2-acetolactate from pyruvate in stationary phase
YP_002365654.1	identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252
YP_002365655.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_002365656.1	identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01484
YP_002365657.1	identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002365658.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01510
YP_002365659.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002365660.1	activates fatty acids by binding to coenzyme A
YP_002365663.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740
YP_002365664.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002365665.1	identified by match to protein family HMM PF04230
YP_002365666.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01832
YP_002365668.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002365671.1	identified by glimmer
YP_002365672.1	identified by match to protein family HMM PF05343
YP_002365673.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01520
YP_002365674.1	identified by match to protein family HMM PF01170
YP_002365676.1	identified by match to protein family HMM PF05544
YP_002365677.1	catalyzes the formation of L-proline from L-ornithine
YP_002365678.1	identified by match to protein family HMM PF00496
YP_002365679.1	identified by match to protein family HMM PF00528
YP_002365680.1	identified by match to protein family HMM PF00528
YP_002365681.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002365682.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002365684.1	identified by match to protein family HMM PF07366
YP_002365685.1	identified by match to protein family HMM PF00005
YP_002365686.1	identified by match to protein family HMM PF02687
YP_002365688.1	identified by glimmer
YP_002365689.1	identified by match to protein family HMM PF01609
YP_002365690.1	identified by match to protein family HMM PF01381
YP_002365692.1	identified by match to protein family HMM PF06013
YP_002365697.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002365698.1	identified by match to protein family HMM PF02518
YP_002365699.1	identified by match to protein family HMM PF00072
YP_002365700.1	identified by match to protein family HMM PF03401
YP_002365703.1	identified by match to protein family HMM PF07728
YP_002365705.1	identified by match to protein family HMM PF01555
YP_002365706.1	identified by match to protein family HMM PF04851
YP_002365708.1	identified by glimmer
YP_002365715.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002365716.1	unwinds double stranded DNA
YP_002365717.1	identified by match to protein family HMM PF01978
YP_002365718.1	identified by match to protein family HMM PF01925
YP_002365719.1	identified by match to protein family HMM PF00892
YP_002365721.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002365722.1	identified by glimmer
YP_002365724.1	identified by glimmer
YP_002365725.1	identified by match to protein family HMM PF00583
YP_002365728.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002365729.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002365731.1	identified by match to protein family HMM PF07336
YP_002365732.1	identified by match to protein family HMM PF04982
YP_002365733.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002365734.1	identified by match to protein family HMM PF01047
YP_002365735.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_002365737.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002365738.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002365739.1	similar to DhaK; in Lactococcus lactis this protein froms a stable complex with DhaS and activates transcription of the dha operon in the presence of dihydroxyacetone
YP_002365740.1	identified by match to protein family HMM TIGR02366
YP_002365741.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_002365746.1	identified by match to protein family HMM PF01381
YP_002365747.1	identified by glimmer
YP_002365748.1	identified by match to protein family HMM PF06725
YP_002365749.1	identified by match to protein family HMM PF00877
YP_002365750.1	identified by match to protein family HMM PF01527
YP_002365751.1	identified by match to protein family HMM PF00665
YP_002365752.1	identified by match to protein family HMM PF00395
YP_002365756.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance
YP_002365760.1	identified by match to protein family HMM PF05532
YP_002365761.1	identified by match to protein family HMM PF04226
YP_002365762.1	identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_002365763.1	identified by glimmer
YP_002365764.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377
YP_002365765.1	binds to sigma-B preventing the formation of an RNA polymerase holoenzyme
YP_002365766.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase
YP_002365767.1	identified by match to protein family HMM PF00210
YP_002365768.1	identified by match to protein family HMM PF00072; match to protein family HMM PF07228
YP_002365769.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_002365770.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF05227
YP_002365771.1	identified by glimmer
YP_002365772.1	identified by glimmer
YP_002365774.1	identified by glimmer
YP_002365775.1	identified by match to protein family HMM PF01906
YP_002365776.1	identified by glimmer
YP_002365777.1	identified by glimmer
YP_002365778.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002365779.1	identified by match to protein family HMM PF02275
YP_002365781.1	identified by glimmer
YP_002365783.1	identified by match to protein family HMM PF00149
YP_002365785.1	catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates
YP_002365786.1	identified by match to protein family HMM PF00903
YP_002365787.1	identified by match to protein family HMM PF00903
YP_002365788.1	identified by match to protein family HMM PF00515
YP_002365790.1	identified by match to protein family HMM PF00561
YP_002365794.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002365795.1	identified by match to protein family HMM PF00190; match to protein family HMM PF07883; match to protein family HMM TIGR03404
YP_002365796.1	identified by glimmer
YP_002365797.1	identified by match to protein family HMM PF04309
YP_002365798.1	identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861
YP_002365799.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_002365800.1	identified by match to protein family HMM PF01266
YP_002365801.1	identified by match to protein family HMM PF03551
YP_002365803.1	identified by glimmer
YP_002365804.1	part of sigC operon induced by temperature upshift
YP_002365805.1	part of sigC operon that is induced by temperature upshift
YP_002365807.1	identified by glimmer
YP_002365808.1	identified by match to protein family HMM PF00580
YP_002365810.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_002365811.1	identified by glimmer
YP_002365813.1	identified by match to protein family HMM PF08963
YP_002365814.1	hpr; ScoC; MarR family; protease production regulatory protein
YP_002365815.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002365816.1	identified by match to protein family HMM PF01230
YP_002365817.1	identified by match to protein family HMM PF00005
YP_002365818.1	identified by match to protein family HMM PF05975
YP_002365820.1	identified by match to protein family HMM TIGR01732
YP_002365821.1	identified by match to protein family HMM PF00440
YP_002365822.1	identified by glimmer
YP_002365823.1	identified by match to protein family HMM PF03703
YP_002365824.1	identified by match to protein family HMM PF03703
YP_002365827.1	identified by match to protein family HMM PF00440
YP_002365828.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002365830.1	identified by match to protein family HMM PF00106
YP_002365831.1	identified by match to protein family HMM PF00892
YP_002365832.1	identified by match to protein family HMM PF03703
YP_002365833.1	identified by match to protein family HMM PF03703
YP_002365834.1	identified by match to protein family HMM PF03992
YP_002365835.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002365836.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_002365837.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_002365838.1	catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX
YP_002365839.1	identified by glimmer
YP_002365840.1	identified by match to protein family HMM PF03372
YP_002365843.1	identified by match to protein family HMM PF03965
YP_002365844.1	identified by match to protein family HMM PF05569
YP_002365845.1	identified by match to protein family HMM PF00440
YP_002365846.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_002365849.1	identified by glimmer
YP_002365850.1	identified by match to protein family HMM PF00583
YP_002365851.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002365853.1	identified by match to protein family HMM PF00753
YP_002365854.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_002365856.1	activates fatty acids by binding to coenzyme A
YP_002365858.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_002365859.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_002365860.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140
YP_002365861.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968
YP_002365863.1	identified by match to protein family HMM PF02018; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_002365864.1	identified by glimmer
YP_002365865.1	identified by match to protein family HMM PF05593
YP_002365868.1	identified by match to protein family HMM PF05593
YP_002365869.1	identified by glimmer
YP_002365870.1	identified by match to protein family HMM PF06877
YP_002365871.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002365872.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002365877.1	identified by glimmer
YP_002365879.1	identified by glimmer
YP_002365881.1	identified by glimmer
YP_002365882.1	identified by glimmer
YP_002365883.1	identified by glimmer
YP_002365885.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06877
YP_002365889.1	identified by glimmer
YP_002365890.1	identified by glimmer
YP_002365891.1	identified by glimmer
YP_002365895.1	identified by glimmer
YP_002365896.1	identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002
YP_002365897.1	identified by glimmer
YP_002365899.1	identified by match to protein family HMM PF00149
YP_002365900.1	identified by match to protein family HMM PF01966
YP_002365902.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002365903.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_002365904.1	identified by match to protein family HMM PF00903
YP_002365905.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002365906.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002365907.1	identified by match to protein family HMM PF02517
YP_002365909.1	identified by glimmer
YP_002365910.1	identified by match to protein family HMM PF01435
YP_002365911.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002365912.1	identified by match to protein family HMM PF00395
YP_002365913.1	identified by match to protein family HMM PF00395
YP_002365914.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_002365915.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_002365916.1	identified by match to protein family HMM PF01636
YP_002365918.1	identified by match to protein family HMM PF00313
YP_002365920.1	identified by glimmer
YP_002365921.1	identified by glimmer
YP_002365922.1	identified by match to protein family HMM PF06338
YP_002365923.1	identified by match to protein family HMM PF09335
YP_002365924.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002365925.1	identified by match to protein family HMM TIGR02773
YP_002365926.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785
YP_002365934.1	identified by match to protein family HMM PF09388
YP_002365935.1	identified by match to protein family HMM PF01557
YP_002365936.1	identified by glimmer
YP_002365937.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885
YP_002365938.1	identified by match to protein family HMM PF07457
YP_002365940.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_002365941.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_002365942.1	identified by match to protein family HMM PF00199
YP_002365943.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_002365944.1	identified by match to protein family HMM PF00128
YP_002365945.1	identified by match to protein family HMM PF01381
YP_002365946.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_002365948.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_002365950.1	identified by match to protein family HMM PF02588
YP_002365953.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002365954.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002365955.1	identified by glimmer
YP_002365956.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346
YP_002365959.1	identified by match to protein family HMM PF01370
YP_002365961.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002365962.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002365965.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002365966.1	identified by glimmer
YP_002365967.1	identified by match to protein family HMM PF00496
YP_002365968.1	identified by match to protein family HMM PF00528
YP_002365969.1	identified by match to protein family HMM PF00528
YP_002365970.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002365971.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_002365972.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_002365973.1	identified by match to protein family HMM PF00496
YP_002365974.1	identified by glimmer
YP_002365975.1	the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress
YP_002365976.1	identified by match to protein family HMM PF03741
YP_002365977.1	enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence
YP_002365978.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_002365979.1	identified by match to protein family HMM PF06054
YP_002365980.1	identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181
YP_002365983.1	identified by match to protein family HMM PF01152
YP_002365984.1	identified by match to protein family HMM PF01928
YP_002365986.1	identified by match to protein family HMM PF04607
YP_002365987.1	catalyzes the phosphorylation of NAD to NADP
YP_002365988.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_002365989.1	identified by match to protein family HMM PF05658
YP_002365990.1	asymmetrical; catalyzes the formation of NTP and NMP from P(1),P(4)-bis(5'-nucleosyl) tetraphosphate; acts on bis(5'-guanosyl) tetraphosphate, bis(5'-xanthosyl)-tetraphosphate, on bis(5'-adenosyl)-tetraphosphate, and bis(5'-uridyl)-tetraphosphate
YP_002365991.1	identified by match to protein family HMM PF01098
YP_002365992.1	identified by match to protein family HMM PF00535
YP_002365993.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002365994.1	identified by match to protein family HMM PF05711
YP_002365995.1	identified by match to protein family HMM PF01391
YP_002365996.1	identified by match to protein family HMM PF00535
YP_002365997.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002365998.1	identified by glimmer
YP_002366000.1	identified by match to protein family HMM PF00483
YP_002366001.1	identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221
YP_002366002.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_002366003.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214
YP_002366004.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_002366007.1	identified by match to protein family HMM PF07098
YP_002366008.1	identified by glimmer
YP_002366009.1	identified by glimmer
YP_002366011.1	identified by match to protein family HMM PF00580
YP_002366012.1	identified by match to protein family HMM PF00665
YP_002366013.1	identified by match to protein family HMM PF01527
YP_002366014.1	identified by match to protein family HMM PF00583
YP_002366015.1	similar to 2'-5' RNA ligase
YP_002366016.1	identified by match to protein family HMM PF00756
YP_002366017.1	identified by match to protein family HMM PF00892
YP_002366018.1	identified by match to protein family HMM PF00027
YP_002366021.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121
YP_002366022.1	identified by glimmer
YP_002366023.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_002366024.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_002366025.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002366026.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_002366027.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_002366028.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002366029.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_002366034.1	identified by glimmer
YP_002366036.1	identified by glimmer
YP_002366039.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_002366040.1	identified by match to protein family HMM PF00583
YP_002366041.1	identified by glimmer
YP_002366043.1	identified by match to protein family HMM PF02624
YP_002366044.1	identified by glimmer
YP_002366045.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_002366046.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_002366047.1	identified by match to protein family HMM PF01381
YP_002366049.1	identified by glimmer
YP_002366051.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366052.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366053.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366056.1	identified by glimmer
YP_002366057.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002366058.1	identified by glimmer
YP_002366059.1	identified by match to protein family HMM PF00768
YP_002366060.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228
YP_002366064.1	identified by match to protein family HMM PF01381; match to protein family HMM PF08671
YP_002366065.1	identified by match to protein family HMM PF08671
YP_002366066.1	identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296
YP_002366067.1	identified by match to protein family HMM PF00171
YP_002366068.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187
YP_002366069.1	identified by match to protein family HMM PF00528
YP_002366070.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00528
YP_002366071.1	identified by match to protein family HMM PF01547
YP_002366072.1	identified by match to protein family HMM PF01569
YP_002366075.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_002366076.1	identified by match to protein family HMM PF07853
YP_002366077.1	identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909
YP_002366078.1	identified by match to protein family HMM PF02754
YP_002366079.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387
YP_002366080.1	identified by match to protein family HMM PF05651
YP_002366082.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002366083.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002366084.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_002366085.1	identified by match to protein family HMM PF02754
YP_002366086.1	identified by match to protein family HMM PF02589; match to protein family HMM TIGR00273
YP_002366087.1	identified by match to protein family HMM PF02589
YP_002366088.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_002366090.1	identified by match to protein family HMM PF01226
YP_002366091.1	identified by match to protein family HMM PF03741
YP_002366092.1	identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933
YP_002366093.1	identified by match to protein family HMM PF00269
YP_002366094.1	identified by match to protein family HMM PF01575
YP_002366095.1	identified by match to protein family HMM PF09602; match to protein family HMM TIGR02131
YP_002366096.1	identified by match to protein family HMM PF03551; match to protein family HMM TIGR02719
YP_002366097.1	identified by match to protein family HMM TIGR02132
YP_002366098.1	catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis
YP_002366099.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01836
YP_002366100.1	identified by match to protein family HMM PF01266
YP_002366101.1	identified by match to protein family HMM PF02386
YP_002366102.1	identified by glimmer
YP_002366104.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR03261
YP_002366106.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR03262
YP_002366107.1	catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate
YP_002366108.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_002366109.1	identified by match to protein family HMM PF03435
YP_002366110.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002366111.1	identified by glimmer
YP_002366112.1	identified by match to protein family HMM PF00395; match to protein family HMM PF00560; match to protein family HMM PF05031
YP_002366113.1	identified by match to protein family HMM PF00596
YP_002366114.1	identified by match to protein family HMM PF00571
YP_002366115.1	identified by match to protein family HMM PF04748
YP_002366116.1	identified by match to protein family HMM PF09388
YP_002366117.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002366118.1	identified by match to protein family HMM PF01047
YP_002366119.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289
YP_002366121.1	identified by glimmer
YP_002366122.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002366123.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_002366124.1	identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367
YP_002366125.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR03365
YP_002366126.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_002366128.1	identified by glimmer
YP_002366130.1	identified by match to protein family HMM PF00583
YP_002366132.1	identified by glimmer
YP_002366133.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_002366134.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002366135.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_002366136.1	identified by match to protein family HMM PF00392
YP_002366137.1	identified by match to protein family HMM PF00005
YP_002366139.1	identified by match to protein family HMM PF00005
YP_002366141.1	identified by match to protein family HMM PF02517
YP_002366142.1	identified by glimmer
YP_002366143.1	identified by match to protein family HMM PF01037
YP_002366144.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002366145.1	identified by match to protein family HMM PF00857
YP_002366147.1	identified by match to protein family HMM PF02016
YP_002366148.1	identified by glimmer
YP_002366149.1	identified by match to protein family HMM PF03060
YP_002366150.1	identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918
YP_002366151.1	D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid
YP_002366152.1	identified by match to protein family HMM PF03062
YP_002366153.1	transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid
YP_002366154.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366155.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002366156.1	identified by glimmer
YP_002366157.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002366158.1	identified by glimmer
YP_002366159.1	identified by glimmer
YP_002366160.1	identified by match to protein family HMM PF01636
YP_002366162.1	identified by glimmer
YP_002366163.1	identified by glimmer
YP_002366164.1	NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones
YP_002366165.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002366167.1	identified by glimmer
YP_002366168.1	identified by match to protein family HMM PF01047
YP_002366169.1	identified by glimmer
YP_002366170.1	identified by match to protein family HMM PF00375
YP_002366171.1	identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933
YP_002366173.1	identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874
YP_002366174.1	identified by glimmer
YP_002366175.1	identified by match to protein family HMM PF03698
YP_002366176.1	identified by glimmer
YP_002366177.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002366178.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002366179.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_002366180.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_002366181.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002366182.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_002366183.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_002366184.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_002366185.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_002366186.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_002366187.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_002366188.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_002366189.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_002366190.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_002366191.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_002366192.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_002366193.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_002366194.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_002366195.1	catalyzes the formation of L-histidinol from L-histidinol phosphate
YP_002366196.1	identified by glimmer
YP_002366197.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_002366198.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_002366199.1	identified by match to protein family HMM PF00884
YP_002366201.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_002366203.1	identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434
YP_002366204.1	ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms
YP_002366205.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_002366206.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_002366207.1	identified by glimmer
YP_002366208.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_002366209.1	identified by match to protein family HMM PF01903
YP_002366210.1	catalyzes the formation of siroheme from precorrin-2
YP_002366211.1	identified by match to protein family HMM PF00209
YP_002366213.1	identified by match to protein family HMM PF01551
YP_002366214.1	identified by match to protein family HMM PF00375
YP_002366215.1	identified by match to protein family HMM PF04167
YP_002366216.1	identified by match to protein family HMM PF03553
YP_002366218.1	identified by match to protein family HMM PF04012
YP_002366220.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002366221.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_002366223.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002366225.1	identified by match to protein family HMM PF01209; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002366227.1	identified by glimmer
YP_002366228.1	identified by match to protein family HMM PF02163
YP_002366230.1	flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine
YP_002366231.1	identified by match to protein family HMM PF00027
YP_002366232.1	identified by glimmer
YP_002366233.1	identified by match to protein family HMM PF01925
YP_002366234.1	identified by match to protein family HMM PF01384
YP_002366235.1	identified by match to protein family HMM PF01865
YP_002366236.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002366239.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_002366240.1	identified by match to protein family HMM PF01904
YP_002366241.1	identified by glimmer
YP_002366242.1	identified by match to protein family HMM PF00589
YP_002366243.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002366244.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_002366246.1	identified by match to protein family HMM PF03706; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331
YP_002366247.1	identified by glimmer
YP_002366249.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_002366250.1	identified by match to protein family HMM PF00768
YP_002366251.1	identified by match to protein family HMM PF07670
YP_002366252.1	identified by match to protein family HMM PF07670
YP_002366253.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_002366254.1	catalyzes the reduction of the disulfide bonds in the heme binding site of apocytochrome c
YP_002366255.1	identified by match to protein family HMM PF05140
YP_002366256.1	identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144
YP_002366257.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002366258.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002366259.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_002366260.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_002366261.1	identified by glimmer
YP_002366265.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614
YP_002366266.1	identified by match to protein family HMM PF02517
YP_002366267.1	identified by match to protein family HMM PF01476
YP_002366268.1	identified by match to protein family HMM PF00149
YP_002366269.1	identified by match to protein family HMM PF00376
YP_002366270.1	enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence
YP_002366271.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_002366272.1	identified by glimmer
YP_002366273.1	identified by glimmer
YP_002366274.1	identified by match to protein family HMM PF01510
YP_002366275.1	identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_002366276.1	identified by match to protein family HMM PF00710
YP_002366277.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_002366278.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002366279.1	catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate
YP_002366280.1	identified by glimmer
YP_002366284.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002366285.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_002366287.1	identified by glimmer
YP_002366290.1	identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836
YP_002366291.1	identified by match to protein family HMM PF00216
YP_002366292.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_002366293.1	identified by match to protein family HMM PF07307
YP_002366294.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_002366295.1	identified by match to protein family HMM PF00348; match to protein family HMM TIGR02748
YP_002366296.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002366297.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002366298.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_002366299.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002366300.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720
YP_002366301.1	identified by match to protein family HMM PF08858; match to protein family HMM PF08864
YP_002366303.1	identified by match to protein family HMM PF00355
YP_002366304.1	electron transport protein
YP_002366305.1	identified by match to protein family HMM PF00034
YP_002366306.1	identified by match to protein family HMM PF07187
YP_002366307.1	identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906
YP_002366308.1	identified by match to protein family HMM PF09577; match to protein family HMM TIGR02878
YP_002366309.1	identified by match to protein family HMM PF04298
YP_002366310.1	identified by match to protein family HMM PF03167
YP_002366311.1	identified by match to protein family HMM PF02588
YP_002366312.1	identified by match to protein family HMM PF03819
YP_002366313.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_002366314.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_002366315.1	identified by match to protein family HMM PF02585
YP_002366316.1	identified by match to protein family HMM PF00534
YP_002366317.1	catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity
YP_002366318.1	identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121
YP_002366320.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_002366321.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_002366322.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_002366323.1	unwinds DNA
YP_002366325.1	identified by match to protein family HMM PF03413
YP_002366326.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002366327.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002366328.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_002366330.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002366331.1	functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC
YP_002366333.1	identified by glimmer
YP_002366334.1	identified by glimmer
YP_002366335.1	identified by match to protein family HMM PF08807
YP_002366339.1	identified by match to protein family HMM PF06908
YP_002366340.1	identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544
YP_002366341.1	identified by match to protein family HMM PF01170; match to protein family HMM PF02926
YP_002366342.1	identified by glimmer
YP_002366344.1	identified by match to protein family HMM PF02074
YP_002366345.1	identified by match to protein family HMM PF00583
YP_002366346.1	identified by glimmer
YP_002366347.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_002366348.1	identified by glimmer
YP_002366349.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_002366350.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173
YP_002366351.1	identified by match to protein family HMM PF04171; match to protein family HMM PF04235
YP_002366352.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366353.1	identified by match to protein family HMM PF00350; match to protein family HMM PF01926
YP_002366354.1	identified by glimmer
YP_002366355.1	identified by match to protein family HMM PF00583
YP_002366357.1	identified by match to protein family HMM PF00581
YP_002366358.1	identified by glimmer
YP_002366360.1	identified by match to protein family HMM PF03738
YP_002366361.1	identified by match to protein family HMM PF03994
YP_002366363.1	identified by match to protein family HMM PF01367; match to protein family HMM PF02739
YP_002366365.1	identified by match to protein family HMM PF01757
YP_002366366.1	identified by match to protein family HMM PF02706
YP_002366368.1	identified by match to protein family HMM PF02397
YP_002366369.1	identified by match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002366370.1	identified by match to protein family HMM PF04932
YP_002366371.1	identified by match to protein family HMM PF00535
YP_002366372.1	identified by match to protein family HMM PF00534
YP_002366373.1	identified by glimmer
YP_002366374.1	identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451
YP_002366375.1	identified by match to protein family HMM PF00583
YP_002366376.1	identified by match to protein family HMM PF00857
YP_002366377.1	identified by glimmer
YP_002366378.1	identified by match to protein family HMM PF00892
YP_002366379.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002366380.1	identified by match to protein family HMM PF01263
YP_002366381.1	identified by match to protein family HMM PF06177
YP_002366382.1	identified by match to protein family HMM PF00075
YP_002366385.1	identified by match to protein family HMM PF00313
YP_002366386.1	identified by match to protein family HMM PF08892
YP_002366387.1	identified by match to protein family HMM PF01810
YP_002366388.1	identified by glimmer
YP_002366389.1	identified by match to protein family HMM PF04116
YP_002366390.1	identified by match to protein family HMM PF04341
YP_002366391.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813
YP_002366392.1	identified by match to protein family HMM PF00202
YP_002366393.1	identified by glimmer
YP_002366394.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00932
YP_002366395.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_002366396.1	identified by match to protein family HMM PF00376
YP_002366397.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_002366398.1	identified by match to protein family HMM PF04239
YP_002366399.1	identified by match to protein family HMM PF02698
YP_002366401.1	identified by match to protein family HMM PF00881
YP_002366402.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366403.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366404.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002366406.1	identified by match to protein family HMM PF01925
YP_002366408.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002366409.1	identified by match to protein family HMM PF09388
YP_002366410.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_002366412.1	Homolog of MotA, appears to be involved in motility on surfaces and under different ionic conditions. With MotS (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_002366413.1	Homolog to MotB, appears to be involved in motility on surfaces and under specific ionic conditions. With MotP (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002366414.1	identified by match to protein family HMM PF00072
YP_002366415.1	identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194
YP_002366416.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002366417.1	identified by glimmer
YP_002366418.1	identified by glimmer
YP_002366419.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_002366423.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_002366424.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook
YP_002366425.1	involved in flagellin assembly
YP_002366428.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_002366429.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_002366430.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_002366431.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002366432.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366433.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002366434.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_002366435.1	involved in type III protein export during flagellum assembly
YP_002366438.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod
YP_002366439.1	the hook connects flagellar basal body to the flagellar filament
YP_002366442.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01584
YP_002366444.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_002366445.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_002366446.1	identified by match to protein family HMM PF01464
YP_002366447.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002366448.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_002366449.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002366451.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_002366452.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_002366453.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_002366454.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_002366455.1	membrane protein involved in the flagellar export apparatus
YP_002366456.1	positive regulator of class III flagellar genes
YP_002366457.1	makes up the distal portion of the flagellar basal body rod
YP_002366458.1	identified by match to protein family HMM PF07973
YP_002366459.1	identified by match to protein family HMM PF01978
YP_002366460.1	identified by match to protein family HMM PF03591
YP_002366461.1	identified by match to protein family HMM PF05437
YP_002366462.1	identified by glimmer
YP_002366464.1	identified by match to protein family HMM PF01738
YP_002366466.1	identified by match to protein family HMM PF08141; match to protein family HMM TIGR02861
YP_002366467.1	identified by match to protein family HMM PF01381
YP_002366468.1	identified by match to protein family HMM PF07690
YP_002366470.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002366471.1	identified by match to protein family HMM PF00005
YP_002366472.1	identified by match to protein family HMM PF01547
YP_002366473.1	identified by match to protein family HMM PF00528
YP_002366474.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_002366477.1	identified by glimmer
YP_002366478.1	identified by glimmer
YP_002366480.1	identified by match to protein family HMM PF00300
YP_002366481.1	identified by glimmer
YP_002366482.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00561
YP_002366484.1	identified by match to protein family HMM PF01047
YP_002366486.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_002366487.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002366489.1	identified by match to protein family HMM PF02012
YP_002366490.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_002366491.1	identified by glimmer
YP_002366492.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_002366493.1	identified by match to protein family HMM PF00892
YP_002366494.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366495.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_002366496.1	identified by match to protein family HMM PF03773
YP_002366497.1	identified by match to protein family HMM PF09323
YP_002366499.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931
YP_002366500.1	identified by match to protein family HMM PF00376
YP_002366501.1	identified by match to protein family HMM PF00106
YP_002366502.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_002366503.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002366506.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_002366507.1	identified by match to protein family HMM PF03575
YP_002366508.1	identified by glimmer
YP_002366509.1	identified by match to protein family HMM PF03965
YP_002366510.1	identified by match to protein family HMM PF01435; match to protein family HMM PF05569
YP_002366511.1	identified by match to protein family HMM PF02683
YP_002366512.1	identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534
YP_002366514.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002366515.1	catalyzes the formation of pyruvate from serine
YP_002366516.1	identified by match to protein family HMM PF04286
YP_002366519.1	identified by glimmer
YP_002366520.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in B. thuringiensis this protein is involved in beta-exotoxin I production
YP_002366521.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_002366522.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002366523.1	identified by match to protein family HMM PF00005
YP_002366524.1	identified by match to protein family HMM PF01061
YP_002366525.1	identified by match to protein family HMM PF01061
YP_002366526.1	identified by match to protein family HMM PF00614
YP_002366527.1	Catalyzes the phosphorylation of UMP to UDP
YP_002366528.1	identified by glimmer
YP_002366529.1	identified by match to protein family HMM PF00375
YP_002366530.1	catalyzes the formation of fumarate from aspartate
YP_002366531.1	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate
YP_002366532.1	identified by match to protein family HMM PF02518
YP_002366533.1	identified by match to protein family HMM PF00072; match to protein family HMM PF08664
YP_002366534.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455
YP_002366537.1	identified by glimmer
YP_002366538.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_002366540.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_002366541.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366544.1	identified by match to protein family HMM PF00293
YP_002366545.1	identified by match to protein family HMM PF07690
YP_002366547.1	identified by match to protein family HMM PF03976
YP_002366550.1	identified by match to protein family HMM PF07690
YP_002366551.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis
YP_002366553.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156
YP_002366554.1	identified by match to protein family HMM PF07690
YP_002366555.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_002366556.1	identified by match to protein family HMM PF00583
YP_002366559.1	identified by match to protein family HMM PF00209
YP_002366560.1	identified by match to protein family HMM PF01522
YP_002366562.1	identified by match to protein family HMM PF04239
YP_002366563.1	identified by match to protein family HMM PF07299
YP_002366565.1	identified by glimmer
YP_002366566.1	identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401
YP_002366567.1	identified by match to protein family HMM PF00106
YP_002366568.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002366569.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_002366570.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small subunit
YP_002366571.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002366572.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_002366573.1	catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic
YP_002366574.1	identified by match to protein family HMM PF09587
YP_002366575.1	identified by match to protein family HMM PF04474
YP_002366577.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002366578.1	identified by match to protein family HMM PF02900
YP_002366579.1	identified by match to protein family HMM PF00561
YP_002366580.1	identified by match to protein family HMM PF04397
YP_002366581.1	identified by match to protein family HMM PF02550; match to protein family HMM TIGR03458
YP_002366582.1	identified by match to protein family HMM PF00583
YP_002366584.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_002366585.1	identified by match to protein family HMM PF00496
YP_002366586.1	identified by match to protein family HMM PF00583
YP_002366587.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002366588.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002366589.1	identified by glimmer
YP_002366590.1	identified by match to protein family HMM PF01551
YP_002366591.1	identified by glimmer
YP_002366592.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_002366593.1	identified by match to protein family HMM PF00581
YP_002366594.1	identified by glimmer
YP_002366595.1	identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745
YP_002366598.1	identified by match to protein family HMM PF05791
YP_002366599.1	identified by match to protein family HMM PF05791
YP_002366600.1	identified by match to protein family HMM PF05791
YP_002366601.1	identified by glimmer
YP_002366602.1	identified by match to protein family HMM PF00754
YP_002366603.1	identified by glimmer
YP_002366604.1	identified by match to protein family HMM PF02073
YP_002366605.1	identified by match to protein family HMM PF03403
YP_002366606.1	identified by match to protein family HMM PF00440
YP_002366607.1	identified by match to protein family HMM PF00583
YP_002366608.1	identified by match to protein family HMM PF01906
YP_002366609.1	identified by match to protein family HMM PF02517
YP_002366610.1	identified by match to protein family HMM PF00440
YP_002366611.1	identified by match to protein family HMM PF04198
YP_002366612.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_002366613.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_002366614.1	Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway
YP_002366615.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_002366616.1	identified by match to protein family HMM PF07301
YP_002366617.1	identified by match to protein family HMM PF05979
YP_002366619.1	identified by match to protein family HMM PF00561
YP_002366620.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002366621.1	identified by match to protein family HMM PF02683
YP_002366622.1	identified by match to protein family HMM PF02012
YP_002366623.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_002366624.1	identified by match to protein family HMM PF00805
YP_002366625.1	identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732
YP_002366626.1	identified by match to protein family HMM PF01551; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_002366628.1	decatenates replicating daughter chromosomes
YP_002366630.1	identified by match to protein family HMM PF01758
YP_002366631.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_002366632.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002366633.1	identified by match to protein family HMM PF00903
YP_002366634.1	identified by match to protein family HMM PF04234; match to protein family HMM PF05425
YP_002366635.1	identified by match to protein family HMM PF07987
YP_002366636.1	identified by match to protein family HMM PF00892
YP_002366637.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002366638.1	identified by match to protein family HMM PF02082
YP_002366639.1	identified by match to protein family HMM PF01323
YP_002366640.1	identified by match to protein family HMM PF00881
YP_002366642.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002366643.1	identified by match to protein family HMM PF01594
YP_002366644.1	Converts (S)-lactate and NAD(+) to pyruvate and NADH
YP_002366645.1	identified by match to protein family HMM PF01593
YP_002366646.1	identified by glimmer
YP_002366647.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_002366648.1	identified by match to protein family HMM PF01094
YP_002366649.1	identified by match to protein family HMM PF00005
YP_002366650.1	identified by match to protein family HMM PF00005
YP_002366651.1	identified by match to protein family HMM PF02653
YP_002366652.1	identified by match to protein family HMM PF02653
YP_002366653.1	identified by match to protein family HMM PF00126
YP_002366657.1	identified by match to protein family HMM PF01047; match to protein family HMM PF03551
YP_002366658.1	identified by match to protein family HMM PF00296
YP_002366659.1	identified by glimmer
YP_002366660.1	identified by match to protein family HMM PF01654
YP_002366661.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_002366662.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02857
YP_002366663.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02868
YP_002366664.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002366665.1	identified by match to protein family HMM PF00535; match to protein family HMM PF08241
YP_002366666.1	identified by match to protein family HMM PF01041
YP_002366667.1	identified by match to protein family HMM PF00132
YP_002366668.1	identified by glimmer
YP_002366671.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366672.1	identified by match to protein family HMM PF02016
YP_002366673.1	identified by match to protein family HMM PF00144; match to protein family HMM PF00768
YP_002366674.1	identified by match to protein family HMM PF00881
YP_002366676.1	identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_002366677.1	identified by match to protein family HMM PF00561
YP_002366678.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002366679.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002366680.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002366681.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002366682.1	identified by match to protein family HMM PF04439
YP_002366683.1	identified by match to protein family HMM PF01522
YP_002366686.1	identified by match to protein family HMM PF01243
YP_002366687.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002366688.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_002366689.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_002366692.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002366694.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002366695.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002366696.1	identified by match to protein family HMM PF01522
YP_002366698.1	identified by match to protein family HMM PF02308
YP_002366699.1	identified by match to protein family HMM PF00583
YP_002366700.1	identified by match to protein family HMM PF04183
YP_002366701.1	identified by match to protein family HMM PF04183
YP_002366702.1	activates fatty acids by binding to coenzyme A
YP_002366703.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_002366705.1	identified by match to protein family HMM PF01261
YP_002366706.1	identified by match to protein family HMM PF00269
YP_002366707.1	identified by match to protein family HMM PF07690
YP_002366708.1	identified by match to protein family HMM PF01810
YP_002366709.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002366711.1	identified by match to protein family HMM PF01734
YP_002366712.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002366713.1	identified by match to protein family HMM PF09234
YP_002366715.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002366716.1	identified by match to protein family HMM PF00293
YP_002366717.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_002366718.1	identified by match to protein family HMM PF02687
YP_002366719.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_002366720.1	identified by match to protein family HMM PF00082
YP_002366721.1	identified by match to protein family HMM PF01022
YP_002366722.1	identified by match to protein family HMM PF00248
YP_002366723.1	identified by match to protein family HMM PF07690
YP_002366727.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_002366728.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_002366729.1	identified by glimmer
YP_002366730.1	identified by glimmer
YP_002366731.1	identified by match to protein family HMM PF03845
YP_002366732.1	identified by match to protein family HMM PF00210
YP_002366733.1	identified by glimmer
YP_002366734.1	identified by glimmer
YP_002366735.1	identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558
YP_002366736.1	identified by glimmer
YP_002366737.1	identified by match to protein family HMM PF01593
YP_002366738.1	identified by match to protein family HMM PF00583
YP_002366739.1	identified by match to protein family HMM PF00248
YP_002366740.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_002366741.1	identified by match to protein family HMM PF00583
YP_002366742.1	identified by match to protein family HMM PF01297
YP_002366743.1	identified by glimmer
YP_002366744.1	identified by match to protein family HMM PF01370
YP_002366745.1	catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds
YP_002366746.1	identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_002366747.1	identified by glimmer
YP_002366748.1	identified by match to protein family HMM PF00496
YP_002366749.1	catalyzes resistance to fosfomycin by the addition of a thiol cofactor
YP_002366751.1	identified by match to protein family HMM PF00300
YP_002366752.1	identified by glimmer
YP_002366753.1	identified by match to protein family HMM PF08757
YP_002366754.1	identified by match to protein family HMM PF00293
YP_002366755.1	identified by match to protein family HMM PF09335
YP_002366756.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002366757.1	identified by match to protein family HMM PF01544
YP_002366758.1	identified by match to protein family HMM PF03773
YP_002366759.1	identified by match to protein family HMM PF09323
YP_002366760.1	identified by match to protein family HMM PF03061
YP_002366761.1	identified by glimmer
YP_002366762.1	identified by match to protein family HMM PF00614
YP_002366763.1	identified by match to protein family HMM PF07875
YP_002366765.1	identified by match to protein family HMM PF02254
YP_002366766.1	identified by match to protein family HMM PF04306
YP_002366767.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_002366769.1	identified by match to protein family HMM PF00571
YP_002366770.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002366771.1	identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222
YP_002366772.1	identified by match to protein family HMM PF07609
YP_002366773.1	identified by glimmer
YP_002366774.1	identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867
YP_002366775.1	identified by match to protein family HMM PF00583
YP_002366776.1	identified by match to protein family HMM PF02557
YP_002366777.1	identified by match to protein family HMM PF00293
YP_002366778.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002366780.1	identified by match to protein family HMM PF01957
YP_002366781.1	identified by match to protein family HMM PF01145
YP_002366782.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867
YP_002366783.1	identified by match to protein family HMM PF00300
YP_002366784.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002366787.1	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492
YP_002366788.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00583
YP_002366790.1	identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426
YP_002366791.1	identified by match to protein family HMM PF02588
YP_002366792.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002366793.1	identified by match to protein family HMM PF00583
YP_002366794.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00149
YP_002366795.1	identified by match to protein family HMM PF07853
YP_002366796.1	identified by match to protein family HMM PF00583
YP_002366798.1	identified by match to protein family HMM PF00583
YP_002366800.1	identified by match to protein family HMM PF00583
YP_002366801.1	identified by match to protein family HMM PF06013
YP_002366804.1	identified by match to protein family HMM PF08817
YP_002366806.1	identified by match to protein family HMM PF01580
YP_002366813.1	identified by glimmer
YP_002366815.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002366827.1	identified by match to protein family HMM PF00583
YP_002366828.1	identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874
YP_002366830.1	identified by glimmer
YP_002366831.1	identified by glimmer
YP_002366833.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01209; match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002366834.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_002366836.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_002366837.1	identified by match to protein family HMM PF01261
YP_002366838.1	identified by match to protein family HMM PF00903
YP_002366840.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002366841.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002366842.1	identified by glimmer
YP_002366844.1	identified by match to protein family HMM PF03109
YP_002366845.1	identified by glimmer
YP_002366846.1	identified by match to protein family HMM PF00753
YP_002366847.1	identified by glimmer
YP_002366848.1	identified by match to protein family HMM PF00255
YP_002366849.1	identified by match to protein family HMM PF01841
YP_002366850.1	identified by match to protein family HMM PF01882
YP_002366851.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_002366852.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580
YP_002366853.1	identified by match to protein family HMM TIGR01660
YP_002366854.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_002366855.1	identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_002366856.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_002366857.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666
YP_002366858.1	catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways
YP_002366859.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_002366860.1	identified by match to protein family HMM PF02391
YP_002366861.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_002366862.1	identified by match to protein family HMM PF07690
YP_002366863.1	identified by match to protein family HMM PF03547
YP_002366864.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366865.1	catalyzes the formation of siroheme from precorrin-2
YP_002366866.1	identified by match to protein family HMM PF01903
YP_002366867.1	this protein contains the C-terminal section of uroporphyrinogen-III methyltransferase fused with uroporphyrinogen-III synthase; studies on Clostridium josui indicate that this protein has uroporphyrinogen-III methylase activity; functions in tetrapyrrole and heme biosynthesis
YP_002366868.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_002366869.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_002366870.1	identified by match to protein family HMM PF01814; match to protein family HMM PF04405
YP_002366871.1	identified by match to protein family HMM PF05901
YP_002366872.1	identified by glimmer
YP_002366873.1	identified by glimmer
YP_002366874.1	identified by match to protein family HMM PF00797
YP_002366875.1	identified by match to protein family HMM PF07819
YP_002366877.1	identified by match to protein family HMM PF04232
YP_002366878.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002366880.1	identified by match to protein family HMM PF00665
YP_002366881.1	identified by match to protein family HMM PF00665
YP_002366882.1	identified by match to protein family HMM PF01527
YP_002366883.1	identified by glimmer
YP_002366888.1	identified by glimmer
YP_002366889.1	identified by match to protein family HMM PF01966
YP_002366890.1	identified by match to protein family HMM PF00005
YP_002366891.1	identified by match to protein family HMM PF06539
YP_002366892.1	identified by glimmer
YP_002366893.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_002366894.1	identified by match to protein family HMM PF03130
YP_002366895.1	identified by glimmer
YP_002366896.1	identified by match to protein family HMM PF06491
YP_002366898.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002366900.1	identified by glimmer
YP_002366901.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002366902.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002366903.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_002366904.1	identified by match to protein family HMM PF07786
YP_002366905.1	identified by match to protein family HMM PF00440
YP_002366906.1	identified by match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002366907.1	identified by glimmer
YP_002366908.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002366909.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_002366910.1	identified by match to protein family HMM PF00939; match to protein family HMM PF03600
YP_002366911.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002366912.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002366913.1	identified by match to protein family HMM PF03413
YP_002366915.1	identified by match to protein family HMM PF00209
YP_002366916.1	identified by match to protein family HMM PF00561
YP_002366917.1	identified by match to protein family HMM PF06042
YP_002366919.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_002366920.1	identified by match to protein family HMM PF03600
YP_002366921.1	identified by match to protein family HMM PF00465
YP_002366922.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035
YP_002366923.1	identified by match to protein family HMM PF01980
YP_002366924.1	identified by match to protein family HMM PF00583
YP_002366927.1	identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_002366928.1	identified by match to protein family HMM PF00583
YP_002366929.1	identified by match to protein family HMM PF00005
YP_002366932.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_002366933.1	identified by match to protein family HMM PF00903
YP_002366934.1	identified by match to protein family HMM PF01636
YP_002366935.1	identified by match to protein family HMM PF00144
YP_002366936.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_002366937.1	identified by match to protein family HMM PF00186
YP_002366938.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223
YP_002366939.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_002366940.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_002366941.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_002366942.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_002366943.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_002366945.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_002366947.1	identified by glimmer
YP_002366948.1	identified by match to protein family HMM PF02630
YP_002366949.1	identified by match to protein family HMM PF00011; match to protein family HMM PF04969
YP_002366950.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_002366951.1	identified by match to protein family HMM PF00583
YP_002366952.1	identified by glimmer
YP_002366953.1	identified by match to protein family HMM PF01520; match to protein family HMM PF08239
YP_002366954.1	identified by match to protein family HMM PF01497
YP_002366955.1	catalyzes the transamination of D-amino acids and their alpha-keto acids
YP_002366956.1	identified by match to protein family HMM PF00881
YP_002366958.1	identified by match to protein family HMM PF00857
YP_002366959.1	identified by match to protein family HMM PF00011
YP_002366960.1	identified by match to protein family HMM PF00924
YP_002366961.1	identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002366962.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_002366963.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_002366964.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_002366965.1	similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs
YP_002366966.1	identified by match to protein family HMM PF01527
YP_002366967.1	identified by match to protein family HMM PF00665
YP_002366968.1	identified by match to protein family HMM PF00528
YP_002366969.1	identified by match to protein family HMM PF00528
YP_002366970.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314
YP_002366971.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_002366972.1	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_002366973.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002366974.1	identified by match to protein family HMM PF00535
YP_002366976.1	identified by match to protein family HMM PF03358
YP_002366977.1	identified by match to protein family HMM PF07690
YP_002366978.1	identified by match to protein family HMM PF02698
YP_002366979.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186
YP_002366980.1	identified by match to protein family HMM PF00528; match to protein family HMM PF04069
YP_002366981.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905
YP_002366983.1	identified by match to protein family HMM PF07728
YP_002366984.1	identified by glimmer
YP_002366985.1	identified by glimmer
YP_002366986.1	remodeling and anchoring of the chromosome protein; in Bacillus subtilis this protein functions in polar chromosome segregation during sporulation; binds inverted sequence motifs called ram along the chromosome; condenses DNA via RacA-RacA interactions
YP_002366987.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_002366988.1	identified by match to protein family HMM PF00171
YP_002366989.1	identified by match to protein family HMM PF07997
YP_002366990.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09385
YP_002366992.1	identified by match to protein family HMM PF00202
YP_002366993.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_002366994.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_002366995.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_002366996.1	identified by match to protein family HMM PF00583
YP_002366997.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002366998.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238
YP_002367000.1	identified by match to protein family HMM PF06855
YP_002367002.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by glimmer
YP_002367004.1	identified by glimmer
YP_002367006.1	identified by match to protein family HMM PF07070
YP_002367007.1	identified by match to protein family HMM PF01569
YP_002367008.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_002367009.1	identified by glimmer
YP_002367010.1	identified by match to protein family HMM PF00085
YP_002367011.1	identified by glimmer
YP_002367013.1	identified by glimmer
YP_002367014.1	identified by glimmer
YP_002367016.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367017.1	identified by match to protein family HMM PF01183
YP_002367018.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_002367021.1	identified by match to protein family HMM PF08863
YP_002367023.1	identified by glimmer
YP_002367025.1	identified by match to protein family HMM PF00106
YP_002367027.1	identified by match to protein family HMM PF01679
YP_002367029.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002367030.1	identified by match to protein family HMM PF07690
YP_002367031.1	identified by match to protein family HMM PF01521
YP_002367032.1	forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle, glyoxylate cycle and respiration
YP_002367033.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_002367034.1	identified by match to protein family HMM TIGR02317
YP_002367035.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002367036.1	identified by match to protein family HMM PF03446; match to protein family HMM PF03807
YP_002367037.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_002367038.1	identified by match to protein family HMM PF01810
YP_002367039.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_002367040.1	identified by glimmer
YP_002367042.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619
YP_002367043.1	identified by match to protein family HMM PF02463
YP_002367045.1	identified by match to protein family HMM PF01022
YP_002367047.1	identified by glimmer
YP_002367048.1	identified by glimmer
YP_002367049.1	identified by match to protein family HMM PF07690
YP_002367050.1	catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin
YP_002367051.1	synthesizes isochorismate from chorismate as part of the biosynthesis of the siderophore 2,3-dihydroxybenzoate; can also be used in menaquinone synthesis
YP_002367052.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR02275
YP_002367053.1	identified by match to protein family HMM PF00550; match to protein family HMM PF00857
YP_002367054.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733
YP_002367055.1	identified by match to protein family HMM PF03621
YP_002367056.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002367057.1	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556
YP_002367059.1	identified by match to protein family HMM PF00216
YP_002367061.1	identified by match to protein family HMM PF05163
YP_002367062.1	identified by match to protein family HMM PF00082; match to protein family HMM PF05922
YP_002367063.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002367064.1	identified by glimmer
YP_002367066.1	identified by match to protein family HMM PF01909
YP_002367067.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367069.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_002367070.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Bacillus have two copies of the threonyl-tRNA synthetase, threonine starvation induces both proteins
YP_002367071.1	identified by match to protein family HMM PF00005
YP_002367072.1	identified by match to protein family HMM PF02687
YP_002367073.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002367075.1	identified by match to protein family HMM PF00528
YP_002367076.1	catalyzes the formation of acetyl phosphate from pyruvate
YP_002367077.1	identified by match to protein family HMM PF02535
YP_002367078.1	identified by match to protein family HMM PF00753
YP_002367079.1	identified by match to protein family HMM PF09346
YP_002367080.1	identified by match to protein family HMM PF01156
YP_002367081.1	identified by glimmer
YP_002367083.1	identified by match to protein family HMM PF04657
YP_002367084.1	identified by match to protein family HMM PF00027
YP_002367085.1	identified by match to protein family HMM PF04657
YP_002367086.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00561
YP_002367087.1	identified by match to protein family HMM PF00583
YP_002367088.1	identified by match to protein family HMM PF00753
YP_002367089.1	identified by match to protein family HMM PF00440
YP_002367090.1	identified by match to protein family HMM PF03176
YP_002367091.1	identified by glimmer
YP_002367092.1	identified by match to protein family HMM PF00302
YP_002367093.1	identified by match to protein family HMM PF00583; match to protein family HMM PF00805
YP_002367094.1	identified by match to protein family HMM PF00583
YP_002367095.1	identified by match to protein family HMM PF00892
YP_002367096.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002367098.1	identified by glimmer
YP_002367099.1	catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX
YP_002367100.1	identified by glimmer
YP_002367101.1	identified by match to protein family HMM PF00583
YP_002367103.1	identified by match to protein family HMM PF00313
YP_002367104.1	identified by match to protein family HMM PF02517
YP_002367107.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002367108.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_002367110.1	identified by match to protein family HMM PF03417
YP_002367111.1	identified by glimmer
YP_002367112.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002367113.1	identified by match to protein family HMM PF03473; match to protein family HMM PF03475
YP_002367114.1	identified by match to protein family HMM PF00583
YP_002367115.1	identified by match to protein family HMM PF07081
YP_002367116.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002367117.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002367118.1	identified by glimmer
YP_002367119.1	identified by glimmer
YP_002367121.1	identified by match to protein family HMM PF01391
YP_002367122.1	identified by match to protein family HMM PF01391
YP_002367123.1	identified by match to protein family HMM PF01391
YP_002367124.1	identified by match to protein family HMM PF00190
YP_002367125.1	identified by glimmer
YP_002367126.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593
YP_002367127.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002367128.1	identified by glimmer
YP_002367129.1	identified by match to protein family HMM PF01596
YP_002367130.1	identified by match to protein family HMM PF05816
YP_002367131.1	identified by glimmer
YP_002367132.1	identified by match to protein family HMM PF02638
YP_002367133.1	identified by match to protein family HMM PF02302
YP_002367134.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410
YP_002367136.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_002367137.1	identified by match to protein family HMM PF01869
YP_002367138.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_002367139.1	identified by match to protein family HMM PF00266
YP_002367140.1	catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic
YP_002367141.1	identified by match to protein family HMM PF01047
YP_002367142.1	identified by match to protein family HMM PF07690
YP_002367143.1	identified by match to protein family HMM PF06803
YP_002367144.1	identified by match to protein family HMM PF00753
YP_002367145.1	identified by glimmer
YP_002367146.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_002367147.1	identified by glimmer
YP_002367149.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367150.1	identified by match to protein family HMM PF00440
YP_002367151.1	identified by match to protein family HMM PF07690
YP_002367153.1	identified by match to protein family HMM PF03848; match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002367154.1	identified by match to protein family HMM PF00903; match to protein family HMM PF06983
YP_002367155.1	identified by match to protein family HMM PF08241
YP_002367156.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_002367157.1	identified by match to protein family HMM PF01047
YP_002367158.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_002367159.1	identified by glimmer
YP_002367162.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002367163.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_002367166.1	identified by match to protein family HMM PF04371
YP_002367167.1	identified by match to protein family HMM PF00196
YP_002367168.1	identified by match to protein family HMM PF01381
YP_002367169.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_002367171.1	identified by match to protein family HMM PF01925
YP_002367172.1	identified by match to protein family HMM PF00132
YP_002367173.1	identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943
YP_002367174.1	identified by match to protein family HMM PF00657
YP_002367175.1	identified by glimmer
YP_002367176.1	identified by match to protein family HMM PF07690
YP_002367177.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_002367178.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_002367179.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_002367180.1	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556
YP_002367181.1	identified by match to protein family HMM PF00975
YP_002367182.1	identified by glimmer
YP_002367183.1	identified by glimmer
YP_002367184.1	identified by glimmer
YP_002367187.1	identified by match to protein family HMM PF00583
YP_002367189.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01832
YP_002367191.1	identified by glimmer
YP_002367192.1	identified by glimmer
YP_002367193.1	identified by match to protein family HMM PF01734
YP_002367194.1	identified by glimmer
YP_002367195.1	identified by match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_002367196.1	identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_002367197.1	identified by match to protein family HMM PF01490; match to protein family HMM PF03222
YP_002367199.1	identified by glimmer
YP_002367202.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00620
YP_002367203.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002367204.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF05504
YP_002367205.1	identified by match to protein family HMM PF00355
YP_002367206.1	identified by match to protein family HMM PF01098
YP_002367207.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400
YP_002367209.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223
YP_002367210.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_002367211.1	identified by glimmer
YP_002367212.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002367213.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002367214.1	identified by match to protein family HMM PF00144
YP_002367215.1	identified by match to protein family HMM PF00149
YP_002367216.1	identified by glimmer
YP_002367217.1	identified by match to protein family HMM PF00005
YP_002367218.1	identified by match to protein family HMM PF01061
YP_002367219.1	identified by match to protein family HMM PF00440
YP_002367220.1	identified by glimmer
YP_002367221.1	identified by match to protein family HMM PF04463; match to protein family HMM PF08349
YP_002367222.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002367223.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002367224.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002367225.1	catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA
YP_002367226.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002367227.1	identified by match to protein family HMM PF01039
YP_002367228.1	identified by match to protein family HMM PF00501
YP_002367231.1	identified by match to protein family HMM PF00583
YP_002367232.1	identified by glimmer
YP_002367233.1	identified by glimmer
YP_002367234.1	identified by match to protein family HMM PF00768
YP_002367235.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002367236.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002367237.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488
YP_002367239.1	Enables the cleavage of the glycosidic bond in S-adenosylhomocysteine
YP_002367240.1	identified by match to protein family HMM PF00583
YP_002367241.1	identified by glimmer
YP_002367242.1	identified by match to protein family HMM PF01527
YP_002367243.1	identified by match to protein family HMM PF00665
YP_002367244.1	identified by match to protein family HMM PF00746; match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504; match to protein family HMM PF07523; match to protein family HMM TIGR01167
YP_002367245.1	identified by match to protein family HMM PF00165
YP_002367246.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002367247.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_002367248.1	identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002367250.1	identified by match to protein family HMM PF08327
YP_002367251.1	identified by match to protein family HMM PF00005
YP_002367252.1	identified by match to protein family HMM PF03551
YP_002367253.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367254.1	identified by match to protein family HMM PF00144
YP_002367255.1	identified by match to protein family HMM PF00376; match to protein family HMM PF06445
YP_002367256.1	identified by match to protein family HMM PF00106
YP_002367257.1	identified by match to protein family HMM PF01638; match to protein family HMM PF03551
YP_002367258.1	identified by match to protein family HMM PF08241
YP_002367259.1	identified by match to protein family HMM PF00561
YP_002367264.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289
YP_002367266.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002367268.1	identified by match to protein family HMM PF03241
YP_002367269.1	identified by match to protein family HMM PF05995
YP_002367271.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002367272.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_002367274.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002367275.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002367276.1	identified by match to protein family HMM PF08450
YP_002367277.1	identified by match to protein family HMM PF01921; match to protein family HMM TIGR00467
YP_002367278.1	identified by match to protein family HMM PF07486
YP_002367279.1	identified by match to protein family HMM PF03069
YP_002367280.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002367281.1	identified by match to protein family HMM PF02518
YP_002367283.1	identified by match to protein family HMM PF00005
YP_002367284.1	identified by match to protein family HMM PF00583
YP_002367285.1	identified by match to protein family HMM PF00005
YP_002367286.1	identified by match to protein family HMM PF02687
YP_002367288.1	identified by glimmer
YP_002367290.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002367291.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002367292.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002367293.1	identified by match to protein family HMM PF03070
YP_002367298.1	identified by match to protein family HMM PF00589
YP_002367299.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002367302.1	identified by match to protein family HMM PF01381
YP_002367303.1	identified by match to protein family HMM PF01381
YP_002367304.1	identified by match to protein family HMM TIGR01764
YP_002367305.1	identified by glimmer
YP_002367306.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002367308.1	identified by glimmer
YP_002367309.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_002367313.1	identified by match to protein family HMM PF03819
YP_002367314.1	identified by glimmer
YP_002367316.1	identified by match to protein family HMM PF07883
YP_002367320.1	identified by glimmer
YP_002367321.1	identified by match to protein family HMM TIGR01637
YP_002367322.1	identified by match to protein family HMM PF00589
YP_002367323.1	identified by match to protein family HMM PF01156
YP_002367324.1	identified by glimmer
YP_002367325.1	identified by glimmer
YP_002367328.1	identified by match to protein family HMM PF01844
YP_002367329.1	identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558
YP_002367330.1	identified by match to protein family HMM PF03354
YP_002367331.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_002367332.1	identified by match to protein family HMM PF00574
YP_002367333.1	identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554
YP_002367334.1	identified by match to protein family HMM PF05135; match to protein family HMM TIGR01560
YP_002367335.1	identified by match to protein family HMM TIGR01563
YP_002367336.1	identified by match to protein family HMM PF07772; match to protein family HMM TIGR01725
YP_002367338.1	identified by match to protein family HMM TIGR01603
YP_002367341.1	identified by match to protein family HMM TIGR01760
YP_002367342.1	identified by match to protein family HMM TIGR01633
YP_002367343.1	identified by match to protein family HMM TIGR01665
YP_002367345.1	identified by match to protein family HMM TIGR01592
YP_002367346.1	identified by match to protein family HMM PF01510; match to protein family HMM PF08239
YP_002367347.1	identified by match to protein family HMM PF08863
YP_002367348.1	identified by match to protein family HMM PF04239
YP_002367349.1	identified by match to protein family HMM PF07485
YP_002367350.1	identified by match to protein family HMM PF01391
YP_002367353.1	identified by glimmer
YP_002367356.1	identified by glimmer
YP_002367358.1	identified by match to protein family HMM PF08874
YP_002367359.1	identified by glimmer
YP_002367360.1	identified by match to protein family HMM PF00067
YP_002367361.1	identified by match to protein family HMM PF07690
YP_002367362.1	identified by match to protein family HMM PF00132
YP_002367363.1	identified by match to protein family HMM PF07561
YP_002367364.1	identified by match to protein family HMM PF03551
YP_002367365.1	identified by match to protein family HMM PF00067
YP_002367366.1	identified by match to protein family HMM PF05995
YP_002367367.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002367368.1	identified by glimmer
YP_002367369.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002367370.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002367371.1	identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426
YP_002367372.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035
YP_002367373.1	identified by match to protein family HMM PF07155
YP_002367374.1	identified by match to protein family HMM PF00005
YP_002367375.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02361
YP_002367376.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002367377.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07694
YP_002367379.1	identified by match to protein family HMM PF04229
YP_002367381.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002367382.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002367383.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002367384.1	identified by match to protein family HMM PF01569
YP_002367385.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793
YP_002367386.1	identified by match to protein family HMM PF07690
YP_002367387.1	identified by match to protein family HMM PF00144
YP_002367388.1	identified by match to protein family HMM PF04892
YP_002367391.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_002367392.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367393.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00376; match to protein family HMM PF08241
YP_002367394.1	identified by match to protein family HMM PF07690
YP_002367395.1	identified by glimmer
YP_002367396.1	identified by match to protein family HMM PF00583
YP_002367397.1	identified by match to protein family HMM PF03009
YP_002367398.1	identified by match to protein family HMM PF02557; match to protein family HMM PF08239
YP_002367401.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002367402.1	identified by match to protein family HMM PF00892
YP_002367403.1	identified by match to protein family HMM PF01270
YP_002367404.1	identified by glimmer
YP_002367405.1	identified by match to protein family HMM PF00583
YP_002367407.1	identified by match to protein family HMM PF00293
YP_002367409.1	identified by match to protein family HMM PF00144
YP_002367410.1	identified by glimmer
YP_002367411.1	identified by match to protein family HMM PF07690
YP_002367412.1	identified by match to protein family HMM PF00583
YP_002367413.1	identified by match to protein family HMM PF00293
YP_002367414.1	binds the polymerase to DNA and acts as a sliding clamp
YP_002367415.1	identified by glimmer
YP_002367418.1	identified by match to protein family HMM PF01042
YP_002367419.1	identified by match to protein family HMM PF09234
YP_002367420.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00756; match to protein family HMM PF09350
YP_002367421.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367422.1	identified by glimmer
YP_002367423.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002367424.1	identified by match to protein family HMM PF01734
YP_002367425.1	identified by match to protein family HMM PF08000
YP_002367426.1	identified by match to protein family HMM PF00583
YP_002367428.1	identified by match to protein family HMM PF00583
YP_002367430.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002367431.1	identified by glimmer
YP_002367432.1	identified by match to protein family HMM PF01541
YP_002367433.1	identified by match to protein family HMM PF00583
YP_002367436.1	identified by glimmer
YP_002367437.1	identified by glimmer
YP_002367439.1	identified by match to protein family HMM PF00293
YP_002367440.1	identified by match to protein family HMM PF01266
YP_002367442.1	identified by glimmer
YP_002367443.1	identified by match to protein family HMM PF00797
YP_002367444.1	identified by match to protein family HMM PF08877
YP_002367446.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_002367447.1	identified by glimmer
YP_002367449.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR02104
YP_002367450.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002367451.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_002367453.1	identified by match to protein family HMM PF06445
YP_002367454.1	identified by match to protein family HMM PF00903
YP_002367455.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002367456.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151
YP_002367457.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002367458.1	identified by match to protein family HMM PF00561
YP_002367460.1	identified by glimmer
YP_002367461.1	identified by glimmer
YP_002367462.1	identified by match to protein family HMM PF08002
YP_002367463.1	similar to protein BCE33L2478
YP_002367464.1	identified by match to protein family HMM PF00583
YP_002367466.1	identified by match to protein family HMM PF09580; match to protein family HMM TIGR02898
YP_002367467.1	identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889
YP_002367468.1	identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869
YP_002367471.1	identified by match to protein family HMM PF00144
YP_002367472.1	identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036
YP_002367473.1	identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035
YP_002367474.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814
YP_002367475.1	identified by match to protein family HMM PF00440
YP_002367478.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002367479.1	identified by glimmer
YP_002367480.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_002367481.1	identified by glimmer
YP_002367482.1	identified by glimmer
YP_002367483.1	identified by match to protein family HMM PF00583
YP_002367484.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002367486.1	identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002367487.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_002367488.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002367489.1	identified by glimmer
YP_002367490.1	E3 component of acetoin cleaving system; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002367491.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_002367492.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_002367493.1	identified by match to protein family HMM PF00676
YP_002367495.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_002367496.1	identified by match to protein family HMM PF04229
YP_002367498.1	identified by match to protein family HMM PF00293
YP_002367499.1	identified by glimmer
YP_002367500.1	identified by match to protein family HMM PF01230
YP_002367501.1	identified by glimmer
YP_002367503.1	identified by match to protein family HMM PF00528
YP_002367504.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_002367505.1	identified by match to protein family HMM PF04069
YP_002367506.1	identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493
YP_002367507.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002367508.1	identified by match to protein family HMM PF00111
YP_002367509.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_002367510.1	identified by match to protein family HMM PF00583
YP_002367511.1	identified by match to protein family HMM PF00041; match to protein family HMM PF02839; match to protein family HMM PF03067
YP_002367512.1	identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426
YP_002367513.1	identified by match to protein family HMM PF03781
YP_002367514.1	In Listeria monocytogenes this protein binds a specific sites on DNA, influencing the topology and transcription; regulates flaA, proU and ompC; is osmoregulated
YP_002367515.1	identified by match to protein family HMM PF01636
YP_002367517.1	identified by match to protein family HMM PF01209; match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002367518.1	identified by match to protein family HMM PF04237
YP_002367519.1	identified by match to protein family HMM PF00583
YP_002367520.1	identified by match to protein family HMM PF00583
YP_002367521.1	identified by glimmer
YP_002367523.1	identified by match to protein family HMM PF00583
YP_002367525.1	identified by match to protein family HMM PF03551
YP_002367526.1	identified by glimmer
YP_002367528.1	identified by match to protein family HMM PF00583
YP_002367529.1	identified by match to protein family HMM PF08279
YP_002367530.1	identified by glimmer
YP_002367531.1	identified by match to protein family HMM PF00580
YP_002367533.1	identified by match to protein family HMM PF06094
YP_002367534.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_002367536.1	identified by glimmer
YP_002367537.1	identified by glimmer
YP_002367539.1	identified by glimmer
YP_002367540.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367541.1	identified by match to protein family HMM PF01183
YP_002367542.1	identified by match to protein family HMM PF01520
YP_002367545.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_002367546.1	identified by match to protein family HMM PF03067
YP_002367547.1	identified by match to protein family HMM PF00583
YP_002367548.1	identified by match to protein family HMM PF01966
YP_002367549.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_002367550.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002367551.1	identified by match to protein family HMM PF00171
YP_002367552.1	identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674
YP_002367553.1	identified by glimmer
YP_002367554.1	identified by match to protein family HMM PF05544
YP_002367555.1	identified by match to protein family HMM PF01266
YP_002367556.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR00229
YP_002367557.1	identified by glimmer
YP_002367558.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367559.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_002367561.1	identified by glimmer
YP_002367562.1	identified by match to protein family HMM PF08876
YP_002367563.1	identified by match to protein family HMM PF00149
YP_002367564.1	identified by match to protein family HMM PF01966
YP_002367565.1	identified by match to protein family HMM PF09335
YP_002367566.1	identified by glimmer
YP_002367567.1	identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918
YP_002367568.1	identified by match to protein family HMM PF00583
YP_002367569.1	identified by match to protein family HMM PF00496
YP_002367570.1	identified by match to protein family HMM PF00877
YP_002367571.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_002367573.1	identified by match to protein family HMM PF04977
YP_002367574.1	identified by match to protein family HMM PF00248
YP_002367575.1	identified by match to protein family HMM PF01965
YP_002367576.1	identified by match to protein family HMM PF00023
YP_002367578.1	identified by glimmer
YP_002367580.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002367581.1	catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue
YP_002367582.1	identified by glimmer
YP_002367583.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_002367584.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002367585.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002367588.1	identified by match to protein family HMM PF00583
YP_002367590.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702
YP_002367591.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_002367592.1	identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_002367593.1	identified by match to protein family HMM PF01432
YP_002367594.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_002367595.1	identified by match to protein family HMM PF07552
YP_002367597.1	identified by match to protein family HMM PF07552
YP_002367598.1	identified by match to protein family HMM PF00583
YP_002367601.1	identified by glimmer
YP_002367602.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002367604.1	identified by match to protein family HMM PF04519
YP_002367606.1	identified by match to protein family HMM PF00496
YP_002367607.1	identified by match to protein family HMM PF07690
YP_002367609.1	identified by glimmer
YP_002367610.1	identified by glimmer
YP_002367611.1	identified by match to protein family HMM PF04226
YP_002367612.1	identified by match to protein family HMM PF01156
YP_002367613.1	identified by glimmer
YP_002367614.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002367615.1	identified by glimmer
YP_002367616.1	identified by glimmer
YP_002367619.1	identified by glimmer
YP_002367620.1	identified by match to protein family HMM PF07690
YP_002367621.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002367623.1	identified by glimmer
YP_002367624.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002367625.1	identified by match to protein family HMM PF07977
YP_002367626.1	catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A
YP_002367629.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002367630.1	identified by match to protein family HMM TIGR02413
YP_002367631.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002367632.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002367633.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002367634.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002367635.1	identified by match to protein family HMM PF01594
YP_002367636.1	identified by glimmer
YP_002367637.1	catalyzes the release of sulfite from alkanesulfonates
YP_002367638.1	identified by match to protein family HMM PF00528
YP_002367639.1	identified by match to protein family HMM PF04069; match to protein family HMM PF09084; match to protein family HMM TIGR01728
YP_002367640.1	identified by match to protein family HMM PF00005
YP_002367641.1	identified by glimmer
YP_002367642.1	identified by match to protein family HMM PF00440
YP_002367643.1	identified by match to protein family HMM PF04167
YP_002367645.1	identified by match to protein family HMM PF07719
YP_002367646.1	identified by match to protein family HMM PF04127
YP_002367647.1	identified by match to protein family HMM PF02522
YP_002367648.1	identified by match to protein family HMM PF00583
YP_002367651.1	identified by match to protein family HMM PF00583
YP_002367652.1	identified by match to protein family HMM PF00583
YP_002367654.1	identified by match to protein family HMM PF06352
YP_002367655.1	identified by match to protein family HMM PF00903
YP_002367656.1	identified by match to protein family HMM PF01522
YP_002367657.1	identified by glimmer
YP_002367658.1	identified by match to protein family HMM PF03741
YP_002367659.1	identified by match to protein family HMM PF00884
YP_002367660.1	identified by match to protein family HMM PF00005
YP_002367661.1	identified by match to protein family HMM PF03176
YP_002367662.1	identified by match to protein family HMM PF00440
YP_002367663.1	identified by match to protein family HMM PF00583
YP_002367664.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_002367665.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
YP_002367666.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002367667.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002367668.1	catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate
YP_002367671.1	identified by match to protein family HMM PF00857
YP_002367672.1	identified by match to protein family HMM PF00583
YP_002367673.1	identified by glimmer
YP_002367676.1	identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239
YP_002367678.1	identified by match to protein family HMM PF00903
YP_002367679.1	identified by match to protein family HMM PF08031
YP_002367681.1	identified by glimmer
YP_002367683.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_002367685.1	identified by match to protein family HMM PF02653
YP_002367686.1	identified by match to protein family HMM PF02653
YP_002367687.1	identified by match to protein family HMM PF00005
YP_002367688.1	identified by match to protein family HMM PF04198
YP_002367689.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782
YP_002367690.1	identified by match to protein family HMM PF07883
YP_002367691.1	identified by match to protein family HMM PF01791
YP_002367692.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002367693.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002367694.1	identified by match to protein family HMM PF00903
YP_002367695.1	identified by match to protein family HMM PF01909
YP_002367696.1	identified by match to protein family HMM PF03992
YP_002367697.1	identified by match to protein family HMM PF07690
YP_002367698.1	identified by match to protein family HMM PF01022
YP_002367700.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM TIGR00804
YP_002367701.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_002367702.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_002367703.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002367704.1	identified by match to protein family HMM PF01546
YP_002367705.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_002367706.1	identified by match to protein family HMM PF00324
YP_002367708.1	identified by match to protein family HMM PF00487
YP_002367709.1	identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296
YP_002367710.1	identified by match to protein family HMM PF04294
YP_002367711.1	identified by match to protein family HMM PF00245; match to protein family HMM PF01676
YP_002367715.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_002367716.1	Phosphoprylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway
YP_002367717.1	identified by match to protein family HMM PF00583
YP_002367718.1	identified by match to protein family HMM PF00903
YP_002367719.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002367722.1	identified by match to protein family HMM PF03551
YP_002367723.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_002367724.1	identified by match to protein family HMM PF01882
YP_002367726.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002367727.1	identified by match to protein family HMM PF00535
YP_002367728.1	identified by glimmer
YP_002367730.1	identified by match to protein family HMM PF00535
YP_002367731.1	identified by match to protein family HMM PF00535
YP_002367733.1	identified by match to protein family HMM PF00202
YP_002367734.1	identified by match to protein family HMM PF00199
YP_002367735.1	identified by match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453
YP_002367737.1	identified by match to protein family HMM PF01979
YP_002367738.1	identified by match to protein family HMM PF00144
YP_002367739.1	identified by glimmer
YP_002367741.1	identified by match to protein family HMM PF01882
YP_002367742.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07726; match to protein family HMM PF07728
YP_002367743.1	identified by match to protein family HMM PF08928; match to protein family HMM PF08929
YP_002367745.1	identified by glimmer
YP_002367749.1	identified by match to protein family HMM PF00665
YP_002367750.1	identified by match to protein family HMM PF01527
YP_002367751.1	identified by match to protein family HMM PF03992
YP_002367752.1	identified by match to protein family HMM PF00881
YP_002367753.1	identified by match to protein family HMM PF01047
YP_002367754.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM PF08477; match to protein family HMM TIGR00231
YP_002367756.1	identified by match to protein family HMM PF00293
YP_002367757.1	identified by match to protein family HMM PF05406
YP_002367758.1	identified by match to protein family HMM PF01370
YP_002367759.1	identified by match to protein family HMM PF02517
YP_002367760.1	identified by match to protein family HMM PF00144
YP_002367761.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_002367762.1	identified by match to protein family HMM PF00583
YP_002367763.1	identified by glimmer
YP_002367764.1	identified by match to protein family HMM PF00293
YP_002367765.1	identified by match to protein family HMM PF00892
YP_002367766.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002367767.1	identified by match to protein family HMM PF00583
YP_002367768.1	identified by match to protein family HMM PF07883
YP_002367769.1	identified by match to protein family HMM PF02639
YP_002367772.1	phosphorylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway
YP_002367773.1	identified by match to protein family HMM PF00149
YP_002367774.1	identified by match to protein family HMM PF01636
YP_002367776.1	identified by match to protein family HMM PF01925
YP_002367777.1	identified by match to protein family HMM PF00583
YP_002367778.1	identified by match to protein family HMM PF00324
YP_002367782.1	identified by match to protein family HMM PF08241
YP_002367783.1	identified by glimmer
YP_002367784.1	identified by match to protein family HMM PF00293
YP_002367785.1	identified by match to protein family HMM PF04989
YP_002367786.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002367787.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002367788.1	identified by glimmer
YP_002367789.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_002367790.1	catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline
YP_002367791.1	identified by match to protein family HMM PF06166
YP_002367792.1	identified by match to protein family HMM PF06149
YP_002367793.1	identified by match to protein family HMM PF03746
YP_002367794.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_002367795.1	identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370
YP_002367796.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_002367797.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002367798.1	identified by match to protein family HMM PF03932
YP_002367799.1	identified by match to protein family HMM PF01022
YP_002367800.1	identified by glimmer
YP_002367801.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_002367802.1	identified by match to protein family HMM PF02698
YP_002367803.1	identified by glimmer
YP_002367804.1	identified by match to protein family HMM PF00583
YP_002367806.1	identified by match to protein family HMM PF07670
YP_002367807.1	identified by match to protein family HMM PF01636
YP_002367808.1	identified by match to protein family HMM PF00583
YP_002367811.1	identified by match to protein family HMM PF00583
YP_002367812.1	identified by match to protein family HMM PF01061
YP_002367813.1	identified by match to protein family HMM PF00440
YP_002367814.1	identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296
YP_002367815.1	identified by match to protein family HMM PF00391; match to protein family HMM PF01326
YP_002367816.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002367817.1	identified by match to protein family HMM PF00753
YP_002367820.1	identified by match to protein family HMM PF00269
YP_002367821.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002367822.1	catalyzes the formation of fumarate from aspartate
YP_002367823.1	identified by match to protein family HMM PF00710; match to protein family HMM TIGR00519
YP_002367824.1	identified by match to protein family HMM PF01381
YP_002367826.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002367827.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002367828.1	identified by match to protein family HMM PF03323
YP_002367829.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002367830.1	identified by match to protein family HMM PF05791
YP_002367831.1	identified by match to protein family HMM PF05791
YP_002367832.1	identified by match to protein family HMM PF05791
YP_002367833.1	identified by match to protein family HMM PF05791
YP_002367834.1	identified by match to protein family HMM PF00165
YP_002367835.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367836.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00269
YP_002367837.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01541
YP_002367838.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_002367839.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002367841.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_002367843.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002367844.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002367845.1	identified by match to protein family HMM PF03323
YP_002367846.1	identified by glimmer
YP_002367847.1	identified by match to protein family HMM PF00072; match to protein family HMM PF08664
YP_002367848.1	identified by match to protein family HMM PF02518
YP_002367849.1	catalyzes the formation of glutamate from glutamine
YP_002367850.1	identified by glimmer
YP_002367851.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002367852.1	identified by match to protein family HMM PF03600
YP_002367854.1	identified by match to protein family HMM PF00144
YP_002367855.1	identified by match to protein family HMM PF05139
YP_002367856.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_002367857.1	identified by match to protein family HMM PF00561
YP_002367858.1	identified by match to protein family HMM PF00857
YP_002367859.1	identified by match to protein family HMM PF00857
YP_002367861.1	identified by match to protein family HMM PF07969
YP_002367862.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002367864.1	identified by match to protein family HMM PF01544
YP_002367869.1	identified by match to protein family HMM TIGR01655
YP_002367871.1	identified by match to protein family HMM PF03073
YP_002367872.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_002367873.1	identified by match to protein family HMM PF05368
YP_002367874.1	identified by match to protein family HMM PF01047
YP_002367875.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002367876.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002367877.1	identified by match to protein family HMM PF03551
YP_002367878.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002367879.1	identified by match to protein family HMM PF01266
YP_002367880.1	identified by match to protein family HMM PF07859
YP_002367881.1	identified by match to protein family HMM PF00484
YP_002367883.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002367885.1	identified by match to protein family HMM PF01522
YP_002367886.1	identified by match to protein family HMM PF00583
YP_002367887.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_002367889.1	identified by glimmer
YP_002367893.1	identified by match to protein family HMM PF01451; match to protein family HMM TIGR02691
YP_002367894.1	identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832
YP_002367895.1	identified by match to protein family HMM PF00903
YP_002367896.1	identified by match to protein family HMM PF01022
YP_002367898.1	identified by match to protein family HMM PF01872
YP_002367900.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993
YP_002367901.1	identified by match to protein family HMM PF00440
YP_002367902.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_002367903.1	identified by match to protein family HMM PF01037
YP_002367904.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002367906.1	identified by match to protein family HMM PF00903
YP_002367908.1	identified by glimmer
YP_002367911.1	identified by match to protein family HMM PF00144
YP_002367912.1	identified by match to protein family HMM PF00144
YP_002367913.1	identified by match to protein family HMM PF01490; match to protein family HMM PF03222
YP_002367916.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01510; match to protein family HMM PF08239
YP_002367917.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002367918.1	identified by match to protein family HMM PF00892
YP_002367919.1	identified by match to protein family HMM PF08803
YP_002367920.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367921.1	identified by glimmer
YP_002367922.1	identified by match to protein family HMM PF01047; match to protein family HMM PF03965
YP_002367923.1	identified by match to protein family HMM PF07485
YP_002367925.1	identified by match to protein family HMM PF03413
YP_002367927.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002367928.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002367929.1	identified by glimmer
YP_002367931.1	identified by match to protein family HMM PF02517
YP_002367932.1	identified by match to protein family HMM PF05139
YP_002367934.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002367937.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667
YP_002367938.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002367939.1	identified by glimmer
YP_002367940.1	identified by match to protein family HMM PF00326
YP_002367941.1	catalyzes the formation of pyruvate from D-cysteine
YP_002367942.1	identified by match to protein family HMM PF00149
YP_002367943.1	identified by match to protein family HMM PF01139
YP_002367944.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002367945.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367946.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02409
YP_002367948.1	identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167
YP_002367949.1	identified by match to protein family HMM PF00005
YP_002367950.1	identified by match to protein family HMM PF02687
YP_002367951.1	identified by match to protein family HMM PF01022
YP_002367952.1	identified by match to protein family HMM PF07690
YP_002367954.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002367955.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002367956.1	identified by match to protein family HMM PF02588
YP_002367957.1	identified by match to protein family HMM PF01047
YP_002367958.1	identified by match to protein family HMM PF00583
YP_002367959.1	identified by match to protein family HMM PF04299
YP_002367960.1	identified by match to protein family HMM PF02588
YP_002367961.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002367964.1	identified by glimmer
YP_002367965.1	identified by match to protein family HMM PF06245
YP_002367966.1	identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826
YP_002367967.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_002367972.1	identified by match to protein family HMM PF01804
YP_002367973.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002367974.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01510; match to protein family HMM PF08239
YP_002367979.1	identified by match to protein family HMM PF06352
YP_002367988.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367990.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367991.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002367992.1	identified by match to protein family HMM PF09346
YP_002367995.1	identified by match to protein family HMM PF00805
YP_002367998.1	identified by match to protein family HMM PF09346
YP_002368004.1	identified by match to protein family HMM PF02557
YP_002368005.1	identified by match to protein family HMM PF09587
YP_002368007.1	identified by match to protein family HMM PF07690
YP_002368009.1	identified by match to protein family HMM PF00561
YP_002368010.1	identified by match to protein family HMM PF01047
YP_002368011.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002368012.1	identified by match to protein family HMM PF00144
YP_002368014.1	identified by match to protein family HMM PF02667
YP_002368015.1	identified by glimmer
YP_002368016.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_002368017.1	identified by match to protein family HMM PF04434
YP_002368022.1	identified by match to protein family HMM PF00005
YP_002368023.1	identified by match to protein family HMM PF02361
YP_002368025.1	identified by match to protein family HMM TIGR01167
YP_002368026.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_002368027.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03606; match to protein family HMM PF03806
YP_002368028.1	identified by match to protein family HMM PF04231
YP_002368029.1	identified by glimmer
YP_002368030.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002368031.1	identified by match to protein family HMM PF01381
YP_002368033.1	identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_002368034.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002368036.1	identified by glimmer
YP_002368037.1	identified by match to protein family HMM PF01638
YP_002368038.1	identified by match to protein family HMM PF00881
YP_002368040.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002368044.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002368046.1	identified by match to protein family HMM PF00005
YP_002368047.1	identified by glimmer
YP_002368048.1	identified by glimmer
YP_002368049.1	identified by match to protein family HMM PF01381
YP_002368051.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254
YP_002368054.1	identified by glimmer
YP_002368055.1	identified by match to protein family HMM PF00583
YP_002368057.1	identified by match to protein family HMM PF00293
YP_002368058.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002368059.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002368060.1	identified by match to protein family HMM PF01594
YP_002368061.1	identified by match to protein family HMM PF04226
YP_002368062.1	identified by match to protein family HMM PF00583
YP_002368063.1	identified by glimmer
YP_002368064.1	identified by match to protein family HMM PF01391
YP_002368065.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01391
YP_002368066.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002368067.1	identified by match to protein family HMM PF07336
YP_002368068.1	identified by match to protein family HMM PF07690
YP_002368069.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002368071.1	identified by glimmer
YP_002368074.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_002368077.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623
YP_002368078.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02622
YP_002368079.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08421; match to protein family HMM PF08484
YP_002368080.1	identified by match to protein family HMM PF01370
YP_002368082.1	identified by match to protein family HMM PF00018; match to protein family HMM PF07653
YP_002368083.1	identified by match to protein family HMM PF00892
YP_002368085.1	identified by match to protein family HMM PF00805
YP_002368086.1	identified by match to protein family HMM PF06906
YP_002368088.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314
YP_002368089.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_002368090.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_002368091.1	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_002368092.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002368093.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_002368095.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002368096.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002368097.1	identified by match to protein family HMM PF03272
YP_002368098.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002368099.1	identified by glimmer
YP_002368101.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_002368102.1	identified by match to protein family HMM PF00925
YP_002368103.1	identified by match to protein family HMM PF01638
YP_002368105.1	identified by match to protein family HMM PF03928
YP_002368106.1	identified by match to protein family HMM PF06993
YP_002368107.1	identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686
YP_002368108.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815
YP_002368110.1	identified by match to protein family HMM PF01022
YP_002368111.1	identified by match to protein family HMM PF01490; match to protein family HMM PF03222
YP_002368112.1	identified by match to protein family HMM PF08858
YP_002368113.1	identified by match to protein family HMM PF02082
YP_002368114.1	identified by glimmer
YP_002368115.1	the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress
YP_002368116.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_002368117.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_002368119.1	identified by match to protein family HMM PF00082
YP_002368120.1	identified by match to protein family HMM PF00657
YP_002368121.1	identified by match to protein family HMM PF00753
YP_002368123.1	identified by match to protein family HMM PF01784
YP_002368124.1	identified by glimmer
YP_002368125.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_002368127.1	identified by match to protein family HMM PF00106
YP_002368128.1	identified by match to protein family HMM PF00583
YP_002368129.1	identified by match to protein family HMM PF00583
YP_002368130.1	identified by match to protein family HMM PF00501
YP_002368131.1	identified by match to protein family HMM PF02525
YP_002368132.1	identified by match to protein family HMM PF01638
YP_002368134.1	identified by match to protein family HMM PF01022
YP_002368135.1	identified by match to protein family HMM PF00535; match to protein family HMM PF00704; match to protein family HMM PF01522
YP_002368137.1	Heat shock-induced
YP_002368138.1	identified by match to protein family HMM PF00535
YP_002368140.1	identified by match to protein family HMM PF06445
YP_002368141.1	identified by match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002368142.1	identified by match to protein family HMM PF01061
YP_002368143.1	identified by match to protein family HMM PF00005
YP_002368144.1	identified by match to protein family HMM PF06304
YP_002368145.1	identified by match to protein family HMM PF03551
YP_002368146.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002368147.1	identified by glimmer
YP_002368149.1	identified by match to protein family HMM PF02018; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_002368150.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_002368151.1	identified by match to protein family HMM PF00753
YP_002368153.1	identified by glimmer
YP_002368154.1	identified by match to protein family HMM PF00144
YP_002368155.1	identified by glimmer
YP_002368156.1	identified by match to protein family HMM PF03486; match to protein family HMM PF07992
YP_002368158.1	identified by match to protein family HMM PF00027
YP_002368159.1	identified by match to protein family HMM PF04657
YP_002368160.1	identified by match to protein family HMM PF04657
YP_002368161.1	identified by glimmer
YP_002368162.1	identified by match to protein family HMM PF00753
YP_002368163.1	identified by match to protein family HMM PF00324
YP_002368164.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_002368167.1	identified by glimmer
YP_002368169.1	identified by glimmer
YP_002368170.1	identified by match to protein family HMM PF00106
YP_002368171.1	identified by match to protein family HMM PF02585
YP_002368172.1	identified by match to protein family HMM PF08830
YP_002368173.1	identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600
YP_002368174.1	identified by glimmer
YP_002368175.1	identified by match to protein family HMM PF00583
YP_002368176.1	identified by match to protein family HMM PF01497
YP_002368177.1	identified by match to protein family HMM PF01032
YP_002368178.1	identified by match to protein family HMM PF01032
YP_002368179.1	identified by match to protein family HMM PF05675
YP_002368182.1	identified by match to protein family HMM PF05163
YP_002368185.1	identified by glimmer
YP_002368186.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002368187.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002368188.1	identified by match to protein family HMM PF00300
YP_002368189.1	identified by match to protein family HMM PF00583
YP_002368190.1	identified by match to protein family HMM PF00488
YP_002368191.1	converts 1,4-alpha-D-glucans to maltodextrin
YP_002368192.1	identified by match to protein family HMM PF00797
YP_002368193.1	identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181
YP_002368194.1	identified by match to protein family HMM PF04371
YP_002368195.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_002368196.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002368197.1	identified by match to protein family HMM PF00376; match to protein family HMM PF06445
YP_002368198.1	identified by match to protein family HMM PF04371
YP_002368199.1	similar to protein Alr2987; identified by match to protein family HMM PF05249
YP_002368200.1	identified by match to protein family HMM PF06146
YP_002368201.1	identified by match to protein family HMM PF04371
YP_002368202.1	identified by match to protein family HMM PF00144
YP_002368204.1	identified by match to protein family HMM PF07690
YP_002368205.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002368206.1	identified by glimmer
YP_002368207.1	identified by match to protein family HMM PF03009
YP_002368208.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494
YP_002368210.1	identified by match to protein family HMM PF01022
YP_002368211.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002368212.1	identified by match to protein family HMM PF02696
YP_002368213.1	identified by match to protein family HMM PF00515
YP_002368214.1	identified by glimmer
YP_002368215.1	identified by match to protein family HMM PF04299
YP_002368216.1	identified by match to protein family HMM PF04229
YP_002368218.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002368219.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_002368221.1	identified by match to protein family HMM PF00583
YP_002368224.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_002368225.1	identified by glimmer
YP_002368227.1	identified by match to protein family HMM PF00581; match to protein family HMM PF00753
YP_002368228.1	identified by match to protein family HMM PF07992
YP_002368229.1	identified by match to protein family HMM PF08795
YP_002368232.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_002368233.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM TIGR02622
YP_002368234.1	identified by glimmer
YP_002368235.1	identified by match to protein family HMM PF00515
YP_002368236.1	identified by glimmer
YP_002368237.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; match to protein family HMM PF02743
YP_002368239.1	identified by glimmer
YP_002368240.1	identified by glimmer
YP_002368242.1	identified by glimmer
YP_002368243.1	identified by match to protein family HMM PF00150
YP_002368244.1	identified by glimmer
YP_002368245.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002368246.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002368247.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002368249.1	identified by glimmer
YP_002368250.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002368251.1	identified by glimmer
YP_002368252.1	identified by glimmer
YP_002368253.1	identified by glimmer
YP_002368255.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by glimmer
YP_002368256.1	identified by glimmer
YP_002368257.1	identified by glimmer
YP_002368258.1	identified by glimmer
YP_002368259.1	identified by glimmer
YP_002368260.1	identified by glimmer
YP_002368261.1	identified by match to protein family HMM PF02018
YP_002368262.1	identified by glimmer
YP_002368263.1	identified by glimmer
YP_002368264.1	identified by glimmer
YP_002368265.1	identified by glimmer
YP_002368266.1	identified by match to protein family HMM PF01476
YP_002368267.1	identified by glimmer
YP_002368268.1	identified by glimmer
YP_002368272.1	identified by match to protein family HMM PF01844
YP_002368273.1	identified by glimmer
YP_002368274.1	identified by glimmer
YP_002368275.1	identified by match to protein family HMM PF01551
YP_002368276.1	identified by match to protein family HMM PF01510
YP_002368277.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002368278.1	identified by glimmer
YP_002368279.1	identified by glimmer
YP_002368285.1	identified by glimmer
YP_002368289.1	identified by glimmer
YP_002368290.1	identified by glimmer
YP_002368292.1	identified by glimmer
YP_002368293.1	identified by glimmer
YP_002368294.1	identified by glimmer
YP_002368295.1	identified by glimmer
YP_002368297.1	identified by match to protein family HMM PF00082
YP_002368299.1	identified by glimmer
YP_002368300.1	identified by glimmer
YP_002368301.1	identified by glimmer
YP_002368302.1	identified by glimmer
YP_002368303.1	identified by glimmer
YP_002368305.1	identified by glimmer
YP_002368306.1	identified by glimmer
YP_002368307.1	identified by glimmer
YP_002368308.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002368309.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002368310.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002368311.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002368312.1	identified by match to protein family HMM PF06725
YP_002368313.1	identified by glimmer
YP_002368314.1	identified by glimmer
YP_002368315.1	identified by glimmer
YP_002368316.1	identified by glimmer
YP_002368318.1	identified by glimmer
YP_002368319.1	identified by glimmer
YP_002368320.1	identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621
YP_002368321.1	identified by match to protein family HMM PF01510; match to protein family HMM PF08239
YP_002368322.1	identified by glimmer
YP_002368323.1	identified by glimmer
YP_002368324.1	identified by match to protein family HMM PF01336
YP_002368325.1	identified by match to protein family HMM PF03960
YP_002368326.1	identified by match to protein family HMM PF06970
YP_002368327.1	identified by match to protein family HMM PF08863
YP_002368328.1	identified by glimmer
YP_002368329.1	identified by glimmer
YP_002368330.1	identified by glimmer
YP_002368334.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002368335.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005
YP_002368336.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002368338.1	identified by glimmer
YP_002368339.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002368340.1	identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453
YP_002368341.1	identified by match to protein family HMM PF02308
YP_002368342.1	identified by match to protein family HMM PF00583
YP_002368343.1	identified by match to protein family HMM PF00903
YP_002368344.1	identified by glimmer
YP_002368345.1	identified by match to protein family HMM PF04294
YP_002368346.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002368348.1	identified by glimmer
YP_002368349.1	identified by glimmer
YP_002368350.1	has 3'-5' exonuclease activity
YP_002368351.1	identified by match to protein family HMM PF00313
YP_002368353.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002368355.1	identified by match to protein family HMM PF00293
YP_002368356.1	identified by match to protein family HMM PF04266
YP_002368358.1	identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451
YP_002368359.1	identified by match to protein family HMM PF00106
YP_002368360.1	identified by match to protein family HMM PF00583
YP_002368361.1	catalyzes the formation of arginine and fumarate from arginosuccinate
YP_002368362.1	identified by glimmer
YP_002368363.1	identified by match to protein family HMM PF01156
YP_002368364.1	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
YP_002368365.1	identified by match to protein family HMM PF06196
YP_002368366.1	identified by match to protein family HMM PF00171
YP_002368367.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002368368.1	identified by glimmer
YP_002368369.1	identified by match to protein family HMM PF00432; match to protein family HMM TIGR01787
YP_002368370.1	identified by match to protein family HMM PF02681
YP_002368371.1	identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688
YP_002368372.1	identified by match to protein family HMM PF06961
YP_002368373.1	identified by glimmer
YP_002368375.1	identified by match to protein family HMM PF01883
YP_002368376.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_002368377.1	identified by match to protein family HMM PF02391
YP_002368378.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_002368379.1	catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways
YP_002368380.1	identified by match to protein family HMM PF01226
YP_002368381.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666
YP_002368382.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_002368384.1	identified by match to protein family HMM PF07849
YP_002368385.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_002368386.1	identified by match to protein family HMM PF03323
YP_002368387.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002368388.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002368389.1	identified by match to protein family HMM PF00324
YP_002368391.1	identified by glimmer
YP_002368392.1	identified by glimmer
YP_002368393.1	identified by match to protein family HMM PF00903
YP_002368395.1	identified by glimmer
YP_002368397.1	identified by match to protein family HMM PF08241
YP_002368398.1	identified by match to protein family HMM PF00496
YP_002368399.1	identified by match to protein family HMM PF00496
YP_002368400.1	identified by match to protein family HMM PF00496
YP_002368401.1	involved in the transport of C4-dicarboxylates across the membrane
YP_002368402.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002368403.1	identified by glimmer
YP_002368404.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_002368406.1	identified by match to protein family HMM PF00005
YP_002368407.1	identified by match to protein family HMM PF00440
YP_002368408.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_002368409.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002368410.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002368411.1	identified by match to protein family HMM PF02629
YP_002368412.1	identified by match to protein family HMM PF00089
YP_002368413.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002368414.1	identified by match to protein family HMM TIGR02491
YP_002368415.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_002368416.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_002368417.1	identified by match to protein family HMM PF01521
YP_002368418.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051
YP_002368419.1	identified by match to protein family HMM PF00704; match to protein family HMM PF01476
YP_002368420.1	identified by match to protein family HMM TIGR03090
YP_002368421.1	SASP N; found in forespore compartment
YP_002368423.1	3'-5' exonuclease of DNA polymerase III
YP_002368424.1	identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534
YP_002368425.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002368427.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002368428.1	Catalyzes the conversion of citrate to isocitrate
YP_002368429.1	SASP O; found in forespore compartment
YP_002368430.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764
YP_002368432.1	SASP P; found in forespore compartment
YP_002368434.1	identified by match to protein family HMM PF07690
YP_002368436.1	identified by match to protein family HMM PF02272; match to protein family HMM PF07973
YP_002368437.1	identified by match to protein family HMM PF00293
YP_002368438.1	identified by glimmer
YP_002368439.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002368440.1	activates fatty acids by binding to coenzyme A
YP_002368441.1	identified by match to protein family HMM PF02632
YP_002368442.1	identified by match to protein family HMM PF00501
YP_002368444.1	identified by match to protein family HMM PF00583
YP_002368446.1	identified by glimmer
YP_002368447.1	identified by match to protein family HMM PF05532
YP_002368449.1	identified by match to protein family HMM PF01510
YP_002368450.1	identified by glimmer
YP_002368451.1	identified by match to protein family HMM PF02588
YP_002368452.1	identified by match to protein family HMM PF00903
YP_002368453.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002368454.1	identified by match to protein family HMM PF02230
YP_002368455.1	identified by match to protein family HMM PF00903
YP_002368456.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121
YP_002368458.1	identified by match to protein family HMM PF01645
YP_002368459.1	identified by match to protein family HMM PF00724
YP_002368460.1	identified by match to protein family HMM PF02559
YP_002368461.1	catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate
YP_002368462.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_002368463.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_002368464.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_002368465.1	regulates expression of hut operon by antitermination mechanism; forms a homohexamer; binds both magnesium and L-histidine and then binds RNA sequences within the terminator region and destabilizes the terminator structure
YP_002368466.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002368467.1	identified by match to protein family HMM PF01965
YP_002368469.1	identified by glimmer
YP_002368471.1	identified by match to protein family HMM PF07301
YP_002368472.1	identified by match to protein family HMM PF02683
YP_002368473.1	identified by glimmer
YP_002368474.1	identified by match to protein family HMM PF00892
YP_002368475.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002368477.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00005
YP_002368479.1	identified by glimmer
YP_002368480.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002368481.1	increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB
YP_002368482.1	identified by match to protein family HMM PF04172
YP_002368483.1	identified by match to protein family HMM PF00293
YP_002368484.1	identified by glimmer
YP_002368485.1	identified by match to protein family HMM PF01925
YP_002368486.1	identified by glimmer
YP_002368487.1	identified by glimmer
YP_002368489.1	identified by match to protein family HMM PF01183; match to protein family HMM PF08239
YP_002368490.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002368491.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002368492.1	identified by match to protein family HMM PF03672
YP_002368494.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002368495.1	identified by glimmer
YP_002368496.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_002368497.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_002368498.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315
YP_002368499.1	identified by match to protein family HMM TIGR01098
YP_002368500.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_002368501.1	identified by match to protein family HMM PF05979
YP_002368502.1	identified by match to protein family HMM PF00239
YP_002368503.1	Represses a number of genes involved in the response to DNA damage
YP_002368505.1	identified by match to protein family HMM PF08006
YP_002368506.1	identified by match to protein family HMM PF03551
YP_002368507.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_002368508.1	identified by match to protein family HMM PF00376
YP_002368509.1	identified by match to protein family HMM PF01053; match to protein family HMM PF06838
YP_002368510.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156
YP_002368511.1	identified by match to protein family HMM PF03458
YP_002368513.1	identified by match to protein family HMM PF00004; match to protein family HMM TIGR02881
YP_002368514.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_002368515.1	identified by match to protein family HMM PF01391
YP_002368516.1	Stimulates the elongation of poly(A) tails
YP_002368517.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_002368518.1	identified by glimmer
YP_002368519.1	identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239
YP_002368520.1	identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427
YP_002368521.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168
YP_002368522.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_002368523.1	identified by match to protein family HMM PF00465
YP_002368524.1	identified by match to protein family HMM PF04238
YP_002368527.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773
YP_002368528.1	identified by match to protein family HMM PF00704
YP_002368529.1	identified by match to protein family HMM PF00149
YP_002368530.1	identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790
YP_002368531.1	identified by match to protein family HMM PF00216
YP_002368532.1	identified by match to protein family HMM PF00583
YP_002368533.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_002368534.1	identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003
YP_002368535.1	identified by match to protein family HMM PF02583
YP_002368537.1	identified by match to protein family HMM PF00756
YP_002368538.1	identified by match to protein family HMM PF00005
YP_002368539.1	identified by match to protein family HMM PF01032
YP_002368540.1	identified by match to protein family HMM PF01032
YP_002368541.1	identified by match to protein family HMM PF01497
YP_002368542.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002368543.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_002368544.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02805
YP_002368545.1	identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_002368546.1	identified by match to protein family HMM PF00730; match to protein family HMM PF07934
YP_002368547.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_002368548.1	identified by glimmer
YP_002368549.1	identified by match to protein family HMM PF00300
YP_002368550.1	identified by match to protein family HMM PF00561
YP_002368551.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002368552.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002368554.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370
YP_002368555.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993
YP_002368559.1	identified by match to protein family HMM PF04172
YP_002368560.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002368561.1	identified by match to protein family HMM PF00561
YP_002368562.1	identified by match to protein family HMM PF02585
YP_002368563.1	identified by glimmer
YP_002368564.1	identified by match to protein family HMM PF00388
YP_002368565.1	identified by match to protein family HMM PF00082; match to protein family HMM PF04151
YP_002368566.1	identified by match to protein family HMM PF01476; match to protein family HMM PF07486
YP_002368567.1	identified by match to protein family HMM PF01266; match to protein family HMM PF07992
YP_002368568.1	identified by match to protein family HMM PF00884
YP_002368571.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_002368572.1	This protein performs the mismatch recognition step during the DNA repair process
YP_002368574.1	identified by match to protein family HMM PF07050
YP_002368575.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_002368576.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_002368577.1	identified by match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02780
YP_002368578.1	identified by match to protein family HMM PF01244
YP_002368579.1	identified by match to protein family HMM PF04232
YP_002368580.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282
YP_002368581.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_002368582.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_002368583.1	identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200
YP_002368584.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_002368588.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002368589.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_002368590.1	identified by match to protein family HMM PF05193
YP_002368591.1	identified by match to protein family HMM PF02653
YP_002368592.1	identified by match to protein family HMM PF02653
YP_002368593.1	identified by match to protein family HMM PF00005
YP_002368594.1	identified by match to protein family HMM PF02608
YP_002368595.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_002368596.1	identified by match to protein family HMM PF01580; match to protein family HMM PF09397
YP_002368598.1	identified by match to protein family HMM PF00574
YP_002368599.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_002368600.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_002368601.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive
YP_002368602.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_002368603.1	involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme
YP_002368604.1	catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance
YP_002368605.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_002368606.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_002368607.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02873
YP_002368608.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591
YP_002368609.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002368610.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_002368611.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_002368612.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_002368613.1	identified by match to protein family HMM PF04456
YP_002368614.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002368615.1	identified by match to protein family HMM PF01248
YP_002368616.1	identified by match to protein family HMM PF04296
YP_002368617.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_002368618.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_002368619.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_002368620.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002368621.1	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_002368622.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002368623.1	identified by match to protein family HMM PF01148
YP_002368624.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_002368625.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002368626.1	Catalyzes the phosphorylation of UMP to UDP
YP_002368627.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_002368628.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002368629.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_002368630.1	heat shock protein involved in degradation of misfolded proteins
YP_002368631.1	heat shock protein involved in degradation of misfolded proteins
YP_002368632.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_002368633.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_002368634.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_002368635.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_002368636.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_002368637.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_002368638.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_002368639.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_002368640.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002368641.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002368642.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_002368643.1	Essential for efficient processing of 16S rRNA
YP_002368645.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002368646.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_002368647.1	identified by match to protein family HMM PF04297; match to protein family HMM PF08281
YP_002368648.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_002368649.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_002368650.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002368651.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002368652.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002368653.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_002368654.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_002368655.1	negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria
YP_002368656.1	catalyzes branch migration in Holliday junction intermediates
YP_002368657.1	identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599
YP_002368658.1	identified by match to protein family HMM PF03780
YP_002368659.1	required for 70S ribosome assembly
YP_002368660.1	identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378
YP_002368661.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_002368662.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_002368663.1	identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714
YP_002368664.1	identified by match to protein family HMM PF00481
YP_002368665.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_002368666.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_002368667.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_002368668.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002368669.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_002368670.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_002368671.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_002368672.1	Essential for recycling GMP and indirectly, cGMP
YP_002368673.1	identified by match to protein family HMM PF04025
YP_002368674.1	identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255
YP_002368675.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_002368676.1	identified by match to protein family HMM PF05670; match to protein family HMM PF05833
YP_002368677.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_002368682.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002368683.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_002368684.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits
YP_002368685.1	responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+)
YP_002368686.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_002368687.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_002368688.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_002368689.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_002368690.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_002368691.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_002368692.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_002368693.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002368695.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme
YP_002368696.1	identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544
YP_002368697.1	identified by match to protein family HMM PF01479
YP_002368698.1	identified by match to protein family HMM PF02325
YP_002368699.1	identified by match to protein family HMM PF04472
YP_002368700.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_002368701.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_002368702.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_002368703.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin
YP_002368704.1	sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation
YP_002368705.1	identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854
YP_002368706.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002368707.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_002368708.1	identified by match to protein family HMM PF03799; match to protein family HMM PF08478
YP_002368709.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002368710.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002368711.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615
YP_002368712.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_002368713.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002368714.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_002368715.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214
YP_002368716.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793
YP_002368717.1	identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209
YP_002368718.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_002368720.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_002368721.1	identified by match to protein family HMM PF00583
YP_002368722.1	identified by match to protein family HMM TIGR02894
YP_002368723.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002368724.1	identified by match to protein family HMM PF02620
YP_002368725.1	identified by match to protein family HMM PF05636
YP_002368726.1	identified by match to protein family HMM PF05362
YP_002368727.1	identified by match to protein family HMM PF01734
YP_002368728.1	identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871
YP_002368729.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002368730.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_002368733.1	identified by match to protein family HMM PF07050
YP_002368734.1	identified by match to protein family HMM PF00300
YP_002368737.1	identified by match to protein family HMM PF00188
YP_002368738.1	identified by match to protein family HMM PF08868
YP_002368739.1	formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate
YP_002368740.1	identified by match to protein family HMM PF09678; match to protein family HMM TIGR02737
YP_002368741.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02908
YP_002368742.1	identified by match to protein family HMM PF00510
YP_002368743.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891
YP_002368744.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866
YP_002368745.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_002368746.1	identified by glimmer
YP_002368747.1	identified by match to protein family HMM PF02628
YP_002368748.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_002368749.1	identified by match to protein family HMM PF01098
YP_002368750.1	depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein
YP_002368752.1	identified by match to protein family HMM PF02562
YP_002368753.1	identified by match to protein family HMM PF01243
YP_002368755.1	identified by glimmer
YP_002368757.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_002368758.1	identified by glimmer
YP_002368759.1	identified by match to protein family HMM PF00459
YP_002368761.1	identified by match to protein family HMM PF06335
YP_002368762.1	identified by match to protein family HMM PF05256
YP_002368763.1	identified by match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711
YP_002368764.1	involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links
YP_002368767.1	identified by glimmer
YP_002368769.1	identified by glimmer
YP_002368770.1	E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002368771.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_002368772.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_002368773.1	identified by match to protein family HMM PF00676; match to protein family HMM TIGR03181
YP_002368774.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002368775.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002368776.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002368777.1	identified by match to protein family HMM PF07288
YP_002368778.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_002368779.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_002368781.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002368782.1	identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532
YP_002368783.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002368784.1	identified by match to protein family HMM PF00571
YP_002368786.1	identified by match to protein family HMM PF04308
YP_002368787.1	identified by glimmer
YP_002368788.1	identified by match to protein family HMM PF08796
YP_002368789.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196
YP_002368790.1	identified by glimmer
YP_002368791.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002368792.1	identified by match to protein family HMM PF00563
YP_002368793.1	identified by match to protein family HMM PF00106
YP_002368794.1	identified by match to protein family HMM PF00149
YP_002368795.1	identified by glimmer
YP_002368796.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_002368797.1	identified by match to protein family HMM PF02541
YP_002368801.1	identified by glimmer
YP_002368802.1	identified by glimmer
YP_002368803.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002368804.1	identified by match to protein family HMM PF03551
YP_002368805.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_002368809.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002368810.1	identified by glimmer
YP_002368811.1	identified by glimmer
YP_002368812.1	identified by match to protein family HMM PF00155
YP_002368813.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002368814.1	identified by match to protein family HMM PF00528
YP_002368815.1	identified by match to protein family HMM PF00528
YP_002368816.1	identified by match to protein family HMM PF01547
YP_002368817.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02903
YP_002368818.1	identified by match to protein family HMM PF00128
YP_002368819.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402
YP_002368820.1	identified by match to protein family HMM PF00106
YP_002368821.1	identified by match to protein family HMM PF06271
YP_002368825.1	identified by match to protein family HMM PF02463
YP_002368826.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_002368827.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293
YP_002368828.1	identified by glimmer
YP_002368829.1	identified by glimmer
YP_002368833.1	identified by match to protein family HMM PF03551
YP_002368834.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_002368836.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_002368837.1	phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway
YP_002368838.1	identified by match to protein family HMM PF00795
YP_002368839.1	produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however
YP_002368840.1	converts 2,3-diketo-5-methylthiopentyl-1-phosphate into 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate; involved in methionine salvage
YP_002368841.1	converts 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate to 1,2-dihydroxy-3-keto-5-methylthiopentene; involved in methionine salvage
YP_002368842.1	converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage
YP_002368843.1	identified by match to protein family HMM PF03079; match to protein family HMM PF07883
YP_002368844.1	identified by glimmer
YP_002368845.1	identified by glimmer
YP_002368846.1	identified by match to protein family HMM PF03446
YP_002368847.1	identified by match to protein family HMM PF00144
YP_002368848.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_002368849.1	identified by match to protein family HMM PF00881
YP_002368850.1	identified by glimmer
YP_002368851.1	identified by glimmer
YP_002368852.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_002368853.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_002368854.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002
YP_002368855.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_002368856.1	identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002368857.1	identified by match to protein family HMM PF07702
YP_002368858.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_002368859.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221
YP_002368860.1	identified by match to protein family HMM PF00753
YP_002368861.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer
YP_002368862.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB
YP_002368863.1	identified by match to protein family HMM PF03745
YP_002368864.1	identified by match to protein family HMM PF00583
YP_002368865.1	identified by match to protein family HMM PF00160
YP_002368866.1	identified by match to protein family HMM PF06207
YP_002368867.1	identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002368868.1	identified by match to protein family HMM PF03323
YP_002368870.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839
YP_002368871.1	identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845
YP_002368872.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838
YP_002368873.1	identified by match to protein family HMM TIGR01951
YP_002368875.1	identified by glimmer
YP_002368876.1	identified by match to protein family HMM PF00209
YP_002368877.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.
YP_002368878.1	binds to sigma F preventing its association with RNA polymerase during sporulation
YP_002368879.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886
YP_002368880.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_002368881.1	identified by match to protein family HMM PF00392; match to protein family HMM PF02082
YP_002368882.1	identified by match to protein family HMM PF00005
YP_002368886.1	identified by match to protein family HMM PF01047
YP_002368887.1	identified by match to protein family HMM PF04402
YP_002368888.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_002368889.1	identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383
YP_002368890.1	Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway
YP_002368891.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_002368892.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_002368894.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_002368896.1	identified by match to protein family HMM PF01475
YP_002368897.1	identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831
YP_002368898.1	identified by match to protein family HMM PF00583
YP_002368899.1	identified by match to protein family HMM PF00293
YP_002368901.1	identified by match to protein family HMM PF00248
YP_002368902.1	identified by match to protein family HMM PF00248
YP_002368903.1	identified by match to protein family HMM PF04229
YP_002368905.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_002368906.1	identified by match to protein family HMM PF01402
YP_002368907.1	identified by match to protein family HMM PF00561
YP_002368908.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM PF06808
YP_002368909.1	identified by match to protein family HMM PF00356
YP_002368910.1	identified by match to protein family HMM PF00583
YP_002368913.1	identified by match to protein family HMM PF09360
YP_002368914.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_002368915.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_002368916.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate
YP_002368917.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_002368919.1	catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine
YP_002368920.1	identified by match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR02072
YP_002368921.1	identified by match to protein family HMM PF00561
YP_002368922.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_002368923.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_002368924.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_002368925.1	identified by glimmer
YP_002368926.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931
YP_002368927.1	in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_002368928.1	identified by match to protein family HMM PF00657
YP_002368929.1	identified by match to protein family HMM PF01047
YP_002368931.1	identified by glimmer
YP_002368932.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_002368933.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707
YP_002368934.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_002368935.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_002368936.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_002368937.1	identified by glimmer
YP_002368938.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_002368939.1	identified by match to protein family HMM PF00753
YP_002368940.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002368941.1	identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_002368942.1	identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_002368943.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002368944.1	member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_002368945.1	identified by glimmer
YP_002368946.1	identified by glimmer
YP_002368947.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_002368948.1	identified by match to protein family HMM PF02308
YP_002368949.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_002368950.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01883
YP_002368951.1	identified by match to protein family HMM PF00583
YP_002368952.1	identified by glimmer
YP_002368953.1	identified by match to protein family HMM PF03734
YP_002368954.1	identified by match to protein family HMM PF06081
YP_002368955.1	identified by match to protein family HMM PF00005
YP_002368956.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002368957.1	identified by match to protein family HMM PF00497
YP_002368958.1	identified by match to protein family HMM PF06491
YP_002368960.1	identified by match to protein family HMM PF00293
YP_002368961.1	identified by match to protein family HMM PF04239
YP_002368962.1	identified by match to protein family HMM PF01098
YP_002368963.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_002368964.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_002368965.1	identified by match to protein family HMM PF00676
YP_002368966.1	E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002368967.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_002368968.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_002368969.1	catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate
YP_002368970.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002368972.1	identified by match to protein family HMM PF03009
YP_002368975.1	identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875
YP_002368976.1	identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860
YP_002368977.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_002368978.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_002368979.1	identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478
YP_002368980.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_002368981.1	identified by match to protein family HMM PF00348
YP_002368982.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_002368983.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_002368984.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_002368985.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_002368986.1	identified by match to protein family HMM PF03780
YP_002368987.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002368988.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002368990.1	identified by match to protein family HMM TIGR02830
YP_002368991.1	identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896
YP_002368992.1	identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829
YP_002368993.1	identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849
YP_002368994.1	identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848
YP_002368995.1	necessary for complete engulfment of forespore
YP_002368996.1	identified by match to protein family HMM TIGR02858
YP_002369000.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_002369001.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_002369002.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_002369004.1	identified by match to protein family HMM PF07136
YP_002369006.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_002369007.1	involved in manganese homeostasis; activates the transcription of the mntABCD operon
YP_002369008.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00620
YP_002369009.1	identified by match to protein family HMM PF03551
YP_002369011.1	identified by glimmer
YP_002369012.1	identified by match to protein family HMM PF03099
YP_002369013.1	identified by match to protein family HMM PF00581
YP_002369015.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002369016.1	identified by match to protein family HMM PF00440
YP_002369017.1	identified by match to protein family HMM PF00893
YP_002369018.1	identified by match to protein family HMM PF00893
YP_002369019.1	identified by glimmer
YP_002369025.1	identified by match to protein family HMM PF00005
YP_002369026.1	identified by match to protein family HMM PF00392
YP_002369029.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002369030.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_002369031.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_002369032.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_002369033.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_002369035.1	identified by glimmer
YP_002369036.1	identified by glimmer
YP_002369040.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_002369041.1	identified by match to protein family HMM PF03171
YP_002369044.1	identified by glimmer
YP_002369046.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_002369047.1	identified by match to protein family HMM PF00482
YP_002369048.1	identified by match to protein family HMM PF00437
YP_002369051.1	identified by match to protein family HMM PF00375
YP_002369053.1	identified by glimmer
YP_002369055.1	identified by glimmer
YP_002369056.1	identified by glimmer
YP_002369058.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002369059.1	identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082
YP_002369060.1	catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions
YP_002369061.1	catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity
YP_002369062.1	catalyzes the formation of L-homocysteine from cystathionine
YP_002369063.1	identified by match to protein family HMM PF00857
YP_002369064.1	identified by match to protein family HMM PF01022
YP_002369065.1	identified by match to protein family HMM PF02636
YP_002369066.1	identified by match to protein family HMM PF00753
YP_002369067.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369068.1	identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744
YP_002369069.1	identified by match to protein family HMM PF06014
YP_002369070.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_002369071.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002369072.1	identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF02878
YP_002369073.1	identified by match to protein family HMM PF01527
YP_002369074.1	identified by match to protein family HMM PF00665
YP_002369075.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_002369076.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002369077.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_002369078.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_002369079.1	identified by match to protein family HMM TIGR02136
YP_002369080.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002369081.1	identified by match to protein family HMM PF07690
YP_002369082.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_002369083.1	identified by glimmer
YP_002369086.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_002369087.1	identified by match to protein family HMM PF01475
YP_002369088.1	identified by match to protein family HMM PF00950; match to protein family HMM PF01032
YP_002369089.1	identified by match to protein family HMM PF00005
YP_002369090.1	identified by match to protein family HMM PF02588
YP_002369092.1	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues
YP_002369093.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_002369095.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_002369096.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_002369097.1	identified by match to protein family HMM PF04816
YP_002369098.1	identified by match to protein family HMM PF00034
YP_002369099.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_002369100.1	synthesizes RNA primers at the replication forks
YP_002369101.1	identified by glimmer
YP_002369102.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002369103.1	identified by match to protein family HMM PF03618
YP_002369104.1	identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002369105.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_002369107.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_002369108.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_002369109.1	identified by match to protein family HMM PF01219
YP_002369110.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_002369111.1	identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277
YP_002369112.1	identified by match to protein family HMM PF02562
YP_002369113.1	identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876
YP_002369114.1	identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856
YP_002369116.1	identified by match to protein family HMM PF09424
YP_002369117.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002369118.1	identified by glimmer
YP_002369119.1	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579
YP_002369120.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002369121.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_002369122.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002369123.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002369124.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_002369125.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_002369126.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002369127.1	identified by match to protein family HMM PF01638
YP_002369128.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002369130.1	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
YP_002369131.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002369132.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_002369133.1	identified by glimmer
YP_002369135.1	identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361
YP_002369136.1	identified by match to protein family HMM PF00383; match to protein family HMM TIGR02571
YP_002369137.1	identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426
YP_002369138.1	may be involved in regulation of competence genes
YP_002369139.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002369140.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_002369141.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488
YP_002369142.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_002369143.1	identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253
YP_002369144.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_002369145.1	in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis
YP_002369146.1	identified by match to protein family HMM PF09419; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668
YP_002369147.1	identified by match to protein family HMM PF08970
YP_002369148.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_002369149.1	sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment
YP_002369151.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002369152.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002369153.1	identified by match to protein family HMM PF00881
YP_002369154.1	identified by match to protein family HMM PF04607
YP_002369156.1	identified by match to protein family HMM PF00245
YP_002369157.1	identified by match to protein family HMM PF00583
YP_002369158.1	identified by match to protein family HMM PF00561
YP_002369159.1	identified by match to protein family HMM PF07681
YP_002369161.1	identified by match to protein family HMM PF00300
YP_002369162.1	identified by glimmer
YP_002369163.1	identified by glimmer
YP_002369164.1	identified by match to protein family HMM TIGR00115
YP_002369165.1	identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF05922
YP_002369167.1	phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_002369168.1	identified by match to protein family HMM PF01329
YP_002369169.1	identified by match to protein family HMM PF00903
YP_002369170.1	identified by match to protein family HMM PF07681
YP_002369171.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002369172.1	identified by match to protein family HMM PF01575
YP_002369173.1	identified by match to protein family HMM PF00583
YP_002369174.1	identified by match to protein family HMM PF00583
YP_002369176.1	identified by match to protein family HMM PF00005
YP_002369177.1	identified by match to protein family HMM PF01032
YP_002369178.1	identified by match to protein family HMM PF01497
YP_002369180.1	identified by match to protein family HMM PF00465
YP_002369181.1	catalyzes the formation of L-homocysteine from cystathionine
YP_002369182.1	identified by match to protein family HMM PF00291
YP_002369183.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_002369184.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002369187.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002369189.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_002369190.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_002369191.1	identified by match to protein family HMM PF01136
YP_002369192.1	identified by match to protein family HMM PF01136
YP_002369193.1	identified by match to protein family HMM PF01596; match to protein family HMM PF02390
YP_002369194.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_002369195.1	identified by match to protein family HMM PF06949
YP_002369196.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_002369197.1	identified by match to protein family HMM PF06135
YP_002369198.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002369200.1	identified by match to protein family HMM PF01594
YP_002369201.1	identified by glimmer
YP_002369202.1	identified by glimmer
YP_002369204.1	identified by match to protein family HMM TIGR01448
YP_002369205.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002369206.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_002369207.1	identified by match to protein family HMM PF00266
YP_002369208.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_002369209.1	identified by match to protein family HMM PF00004
YP_002369210.1	identified by match to protein family HMM TIGR02894
YP_002369211.1	identified by match to protein family HMM PF00899
YP_002369212.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002369213.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002369215.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_002369216.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_002369217.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_002369218.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_002369219.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_002369220.1	part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002369222.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR02900
YP_002369223.1	identified by match to protein family HMM PF04239
YP_002369225.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_002369226.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002369227.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_002369229.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002369230.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002369231.1	identified by match to protein family HMM PF01497
YP_002369232.1	identified by match to protein family HMM PF08955; match to protein family HMM PF08977
YP_002369233.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002369234.1	identified by match to protein family HMM PF09580
YP_002369235.1	identified by match to protein family HMM PF01476; match to protein family HMM TIGR02899
YP_002369236.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_002369237.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_002369238.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_002369239.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_002369240.1	identified by match to protein family HMM PF02829; match to protein family HMM PF08279
YP_002369241.1	identified by match to protein family HMM PF03473; match to protein family HMM PF03475
YP_002369242.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_002369243.1	identified by match to protein family HMM PF02687
YP_002369244.1	identified by match to protein family HMM PF02687
YP_002369245.1	identified by match to protein family HMM PF00005
YP_002369246.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002369247.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369248.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002369250.1	involved in the peptidyltransferase reaction during translation
YP_002369251.1	identified by match to protein family HMM PF04327
YP_002369252.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_002369253.1	identified by match to protein family HMM TIGR00757
YP_002369254.1	identified by match to protein family HMM PF02163
YP_002369255.1	identified by match to protein family HMM PF01551
YP_002369256.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_002369257.1	blocks the formation of polar Z-ring septums
YP_002369258.1	identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426
YP_002369259.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_002369260.1	functions in MreBCD complex in some organisms
YP_002369261.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_002369262.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_002369264.1	identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499
YP_002369265.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_002369266.1	identified by match to protein family HMM TIGR02904
YP_002369267.1	identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907
YP_002369268.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_002369269.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_002369270.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_002369271.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_002369272.1	identified by match to protein family HMM PF01578
YP_002369273.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_002369274.1	identified by match to protein family HMM PF01047
YP_002369275.1	identified by match to protein family HMM PF02566; match to protein family HMM TIGR03561
YP_002369276.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_002369277.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_002369278.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902
YP_002369279.1	binds and unfolds substrates as part of the ClpXP protease
YP_002369280.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_002369282.1	identified by glimmer
YP_002369283.1	identified by glimmer
YP_002369285.1	identified by glimmer
YP_002369286.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_002369287.1	hydrolyzes non-standard nucleotides such as xanthine and inosine
YP_002369288.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_002369290.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_002369291.1	identified by glimmer
YP_002369292.1	identified by match to protein family HMM PF07690
YP_002369293.1	identified by match to protein family HMM PF01965
YP_002369294.1	identified by match to protein family HMM PF00440
YP_002369295.1	identified by match to protein family HMM PF01965
YP_002369296.1	identified by match to protein family HMM PF00196; match to protein family HMM PF08281
YP_002369297.1	identified by match to protein family HMM PF00860
YP_002369298.1	metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain
YP_002369299.1	identified by match to protein family HMM PF04024
YP_002369300.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002369302.1	identified by match to protein family HMM PF00230
YP_002369303.1	identified by match to protein family HMM PF02082
YP_002369305.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005
YP_002369306.1	identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533
YP_002369307.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002369308.1	With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_002369309.1	identified by match to protein family HMM PF02557
YP_002369310.1	identified by match to protein family HMM PF03061
YP_002369311.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_002369312.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_002369313.1	identified by match to protein family HMM TIGR02046
YP_002369315.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002369316.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_002369317.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_002369318.1	identified by match to protein family HMM PF01012
YP_002369319.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002369320.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08359
YP_002369321.1	activates fatty acids by binding to coenzyme A
YP_002369322.1	identified by match to protein family HMM PF01391
YP_002369323.1	identified by match to protein family HMM PF01497
YP_002369324.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_002369326.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002369327.1	identified by match to protein family HMM PF05163
YP_002369332.1	identified by match to protein family HMM PF00005
YP_002369333.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002369334.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369335.1	identified by glimmer
YP_002369338.1	iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source
YP_002369339.1	identified by match to protein family HMM PF07170; match to protein family HMM TIGR03064
YP_002369340.1	identified by match to protein family HMM PF00005
YP_002369341.1	identified by match to protein family HMM PF01032
YP_002369342.1	identified by match to protein family HMM PF01497
YP_002369343.1	identified by match to protein family HMM PF05031; match to protein family HMM TIGR03063
YP_002369344.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF05031
YP_002369345.1	identified by match to protein family HMM PF05031; match to protein family HMM TIGR03063
YP_002369346.1	identified by glimmer
YP_002369347.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002369348.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_002369349.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_002369350.1	identified by match to protein family HMM PF02811
YP_002369351.1	identified by match to protein family HMM PF02674
YP_002369352.1	identified by match to protein family HMM PF05164
YP_002369353.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002369354.1	identified by match to protein family HMM PF01797
YP_002369355.1	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_002369356.1	identified by glimmer
YP_002369357.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002369358.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002369359.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002369360.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032
YP_002369361.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002369362.1	identified by match to protein family HMM PF01966
YP_002369363.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002369365.1	identified by match to protein family HMM PF00440
YP_002369366.1	identified by match to protein family HMM PF05343
YP_002369367.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08761
YP_002369368.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002369369.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_002369370.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_002369371.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_002369372.1	identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834
YP_002369374.1	Primosomal protein that may act to load helicase DnaC during DNA replication
YP_002369375.1	identified by match to protein family HMM PF07261
YP_002369376.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_002369377.1	Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_002369378.1	identified by glimmer
YP_002369379.1	NADP-dependent; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; active during gluconeogenesis
YP_002369380.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_002369381.1	identified by match to protein family HMM PF02659; match to protein family HMM TIGR02840
YP_002369382.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_002369383.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_002369384.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002369385.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369386.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369387.1	identified by match to protein family HMM PF01575
YP_002369388.1	Catalyzes the reversible oxidation of malate to oxaloacetate
YP_002369389.1	Converts isocitrate to alpha ketoglutarate
YP_002369390.1	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate
YP_002369391.1	identified by match to protein family HMM PF04284
YP_002369392.1	identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872
YP_002369393.1	F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein
YP_002369394.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002369395.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_002369396.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_002369397.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_002369398.1	identified by match to protein family HMM PF00392
YP_002369399.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_002369400.1	catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_002369403.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_002369406.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085
YP_002369407.1	identified by glimmer
YP_002369408.1	catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins
YP_002369409.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_002369413.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369414.1	identified by match to protein family HMM PF00583
YP_002369415.1	identified by match to protein family HMM PF07883
YP_002369416.1	identified by glimmer
YP_002369417.1	identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_002369418.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002369419.1	identified by match to protein family HMM PF00582
YP_002369423.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_002369424.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_002369427.1	identified by glimmer
YP_002369428.1	identified by match to protein family HMM PF02588
YP_002369430.1	identified by glimmer
YP_002369431.1	identified by match to protein family HMM PF00293
YP_002369432.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_002369433.1	identified by match to protein family HMM PF02384
YP_002369434.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_002369435.1	identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874
YP_002369437.1	catalyzes the phosphorylation of NAD to NADP
YP_002369438.1	identified by match to protein family HMM PF07969
YP_002369439.1	identified by match to protein family HMM PF00903; match to protein family HMM PF06983
YP_002369440.1	identified by match to protein family HMM PF00501
YP_002369441.1	identified by match to protein family HMM PF00269
YP_002369442.1	Required for the synthesis of the thiazole moiety
YP_002369443.1	identified by match to protein family HMM PF00266
YP_002369444.1	acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation
YP_002369445.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002369446.1	identified by match to protein family HMM PF00892
YP_002369447.1	identified by match to protein family HMM PF00440
YP_002369449.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_002369450.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002369452.1	identified by glimmer
YP_002369453.1	identified by glimmer
YP_002369454.1	identified by glimmer
YP_002369455.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369456.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002369457.1	identified by glimmer
YP_002369458.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_002369460.1	identified by match to protein family HMM PF00132
YP_002369461.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_002369463.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01842
YP_002369464.1	identified by match to protein family HMM PF00850
YP_002369465.1	identified by match to protein family HMM PF00561
YP_002369467.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369468.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002369469.1	identified by match to protein family HMM PF00023
YP_002369470.1	identified by match to protein family HMM PF01408
YP_002369471.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_002369474.1	identified by glimmer
YP_002369476.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481
YP_002369477.1	catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate
YP_002369478.1	identified by match to protein family HMM PF07537
YP_002369480.1	identified by match to protein family HMM PF06103
YP_002369481.1	identified by match to protein family HMM PF02073
YP_002369483.1	identified by match to protein family HMM PF00583
YP_002369484.1	identified by match to protein family HMM PF00583
YP_002369485.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002369486.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_002369487.1	identified by match to protein family HMM PF01580; match to protein family HMM PF09397
YP_002369488.1	identified by match to protein family HMM PF01520
YP_002369489.1	identified by glimmer
YP_002369490.1	identified by match to protein family HMM PF01588
YP_002369491.1	identified by match to protein family HMM PF07285
YP_002369492.1	identified by match to protein family HMM PF00085
YP_002369493.1	pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog
YP_002369494.1	identified by match to protein family HMM PF05343
YP_002369495.1	identified by match to protein family HMM PF03413
YP_002369496.1	identified by match to protein family HMM PF00753
YP_002369497.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_002369499.1	identified by match to protein family HMM PF01636; match to protein family HMM PF02958
YP_002369500.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104
YP_002369501.1	identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258
YP_002369502.1	divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases
YP_002369503.1	identified by match to protein family HMM PF08220
YP_002369504.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_002369505.1	identified by match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002369506.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_002369507.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002369508.1	identified by match to protein family HMM PF01022
YP_002369509.1	identified by match to protein family HMM PF08327
YP_002369510.1	identified by glimmer
YP_002369513.1	identified by match to protein family HMM PF02559
YP_002369514.1	Converts glucose to D-glucono-1,5 lactone
YP_002369515.1	identified by match to protein family HMM PF06800; match to protein family HMM TIGR00776
YP_002369516.1	identified by glimmer
YP_002369517.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_002369518.1	identified by match to protein family HMM PF02391
YP_002369519.1	identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176
YP_002369520.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_002369521.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_002369522.1	catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways
YP_002369523.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666
YP_002369524.1	identified by match to protein family HMM PF01391
YP_002369525.1	identified by glimmer
YP_002369527.1	identified by match to protein family HMM PF00581
YP_002369528.1	identified by glimmer
YP_002369529.1	catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA
YP_002369530.1	identified by match to protein family HMM PF03323
YP_002369531.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002369532.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002369533.1	identified by glimmer
YP_002369536.1	identified by glimmer
YP_002369537.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002369538.1	identified by match to protein family HMM PF07690
YP_002369539.1	identified by match to protein family HMM PF00999
YP_002369540.1	identified by match to protein family HMM PF02080
YP_002369541.1	identified by match to protein family HMM PF00589
YP_002369542.1	identified by match to protein family HMM PF02687
YP_002369543.1	identified by match to protein family HMM PF00005
YP_002369544.1	identified by match to protein family HMM PF04171; match to protein family HMM PF04235
YP_002369545.1	identified by glimmer
YP_002369547.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212
YP_002369548.1	identified by match to protein family HMM PF06962
YP_002369549.1	identified by match to protein family HMM PF00005
YP_002369551.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035
YP_002369552.1	identified by match to protein family HMM PF03929
YP_002369553.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002369555.1	identified by match to protein family HMM PF00561
YP_002369556.1	identified by match to protein family HMM PF00132
YP_002369557.1	identified by match to protein family HMM PF01569
YP_002369558.1	identified by match to protein family HMM PF00534
YP_002369560.1	identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177
YP_002369561.1	identified by glimmer
YP_002369563.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002369564.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_002369565.1	identified by match to protein family HMM PF05468
YP_002369566.1	identified by glimmer
YP_002369567.1	identified by glimmer
YP_002369568.1	identified by match to protein family HMM PF00892
YP_002369570.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369571.1	identified by match to protein family HMM PF01784
YP_002369572.1	identified by match to protein family HMM PF01391
YP_002369573.1	identified by match to protein family HMM PF06030
YP_002369578.1	identified by match to protein family HMM PF02518
YP_002369579.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002369580.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002369581.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002369582.1	identified by match to protein family HMM PF00561
YP_002369583.1	identified by match to protein family HMM PF00884
YP_002369584.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002369585.1	identified by glimmer
YP_002369587.1	identified by match to protein family HMM PF00005
YP_002369588.1	identified by match to protein family HMM PF00528
YP_002369589.1	identified by glimmer
YP_002369590.1	identified by glimmer
YP_002369591.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_002369593.1	identified by match to protein family HMM PF00293; match to protein family HMM TIGR02705
YP_002369595.1	identified by glimmer
YP_002369598.1	identified by match to protein family HMM PF00893
YP_002369599.1	identified by match to protein family HMM PF00893
YP_002369600.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369601.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00376
YP_002369602.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_002369603.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_002369604.1	identified by match to protein family HMM PF00484
YP_002369605.1	identified by match to protein family HMM PF01654
YP_002369606.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_002369608.1	identified by glimmer
YP_002369609.1	identified by match to protein family HMM PF02698
YP_002369610.1	identified by match to protein family HMM PF02588
YP_002369612.1	identified by glimmer
YP_002369614.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04012
YP_002369616.1	identified by glimmer
YP_002369617.1	identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00437
YP_002369618.1	identified by match to protein family HMM PF04023
YP_002369619.1	identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357
YP_002369620.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002369621.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369622.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_002369623.1	identified by match to protein family HMM TIGR01167
YP_002369624.1	identified by glimmer
YP_002369625.1	identified by glimmer
YP_002369626.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_002369627.1	identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147
YP_002369628.1	identified by match to protein family HMM TIGR01784
YP_002369632.1	identified by glimmer
YP_002369633.1	identified by match to protein family HMM PF02687
YP_002369634.1	identified by match to protein family HMM PF00005
YP_002369635.1	identified by glimmer
YP_002369636.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002369637.1	identified by match to protein family HMM PF09335
YP_002369639.1	identified by match to protein family HMM PF02687
YP_002369640.1	identified by match to protein family HMM PF00005
YP_002369641.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_002369642.1	identified by match to protein family HMM PF07853
YP_002369643.1	identified by match to protein family HMM PF07853
YP_002369644.1	identified by match to protein family HMM PF01022
YP_002369645.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369646.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002369648.1	identified by match to protein family HMM PF02687
YP_002369649.1	identified by match to protein family HMM PF00005
YP_002369650.1	identified by match to protein family HMM PF02687
YP_002369651.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002369652.1	identified by match to protein family HMM PF00440
YP_002369654.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_002369655.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_002369656.1	identified by match to protein family HMM PF00294
YP_002369657.1	identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581
YP_002369658.1	identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437
YP_002369659.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_002369661.1	identified by glimmer
YP_002369662.1	identified by match to protein family HMM PF02557
YP_002369663.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002369664.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369665.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR01928
YP_002369666.1	converts O-succinylbenzoate to O-succinylbenzoyl-CoA
YP_002369667.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369668.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_002369669.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR03695
YP_002369670.1	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis
YP_002369671.1	identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543
YP_002369672.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_002369673.1	identified by match to protein family HMM TIGR02890
YP_002369674.1	identified by match to protein family HMM PF00313
YP_002369675.1	identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266
YP_002369677.1	identified by match to protein family HMM PF01764
YP_002369678.1	identified by glimmer
YP_002369679.1	identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093
YP_002369680.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_002369681.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR02092
YP_002369682.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_002369683.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_002369685.1	identified by glimmer
YP_002369686.1	Converts (S)-lactate and NAD(+) to pyruvate and NADH
YP_002369687.1	identified by match to protein family HMM PF02308
YP_002369688.1	identified by match to protein family HMM PF02254; match to protein family HMM PF07885
YP_002369689.1	identified by match to protein family HMM PF08868
YP_002369690.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_002369691.1	identified by match to protein family HMM PF04070
YP_002369692.1	induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation
YP_002369693.1	identified by match to protein family HMM PF00155
YP_002369694.1	identified by match to protein family HMM PF01037
YP_002369695.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_002369696.1	identified by match to protein family HMM PF00561
YP_002369697.1	identified by match to protein family HMM PF08958
YP_002369698.1	identified by match to protein family HMM PF00155
YP_002369699.1	identified by match to protein family HMM PF00080
YP_002369701.1	identified by match to protein family HMM PF08810
YP_002369702.1	inhibitor of the KinA pathway of sporulation
YP_002369703.1	identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600
YP_002369705.1	identified by match to protein family HMM PF08713
YP_002369706.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002369707.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_002369709.1	identified by match to protein family HMM PF02632
YP_002369710.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_002369711.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_002369712.1	identified by match to protein family HMM PF02457
YP_002369713.1	identified by glimmer
YP_002369714.1	identified by match to protein family HMM PF02681
YP_002369716.1	identified by match to protein family HMM PF01040
YP_002369717.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_002369718.1	identified by glimmer
YP_002369719.1	identified by match to protein family HMM PF02681
YP_002369721.1	identified by match to protein family HMM PF01040
YP_002369722.1	identified by match to protein family HMM PF06725
YP_002369724.1	identified by match to protein family HMM PF00293
YP_002369725.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_002369726.1	identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_002369727.1	identified by match to protein family HMM PF00746; match to protein family HMM PF01345; match to protein family HMM TIGR01167; match to protein family HMM TIGR01451
YP_002369728.1	identified by match to protein family HMM PF06445
YP_002369729.1	identified by match to protein family HMM PF07690
YP_002369731.1	identified by match to protein family HMM PF04463
YP_002369732.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002369733.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002369735.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_002369736.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_002369737.1	identified by match to protein family HMM PF07293
YP_002369738.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_002369739.1	identified by match to protein family HMM PF09388
YP_002369740.1	identified by match to protein family HMM PF00005
YP_002369741.1	identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245
YP_002369742.1	identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686
YP_002369744.1	identified by glimmer
YP_002369745.1	identified by glimmer
YP_002369746.1	identified by match to protein family HMM PF09346
YP_002369747.1	identified by glimmer
YP_002369749.1	identified by glimmer
YP_002369750.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01909
YP_002369751.1	identified by match to protein family HMM PF07315
YP_002369752.1	identified by match to protein family HMM PF01106
YP_002369753.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer
YP_002369754.1	identified by match to protein family HMM TIGR02905
YP_002369755.1	identified by match to protein family HMM PF04608
YP_002369756.1	identified by match to protein family HMM PF00583
YP_002369758.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002369760.1	identified by match to protein family HMM PF08282
YP_002369761.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_002369762.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460
YP_002369763.1	identified by match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002369764.1	identified by match to protein family HMM PF01934
YP_002369765.1	similar to GlpX type II fructose-1,6-bisphosphatase
YP_002369768.1	identified by match to protein family HMM PF00583
YP_002369769.1	identified by match to protein family HMM PF06265
YP_002369770.1	identified by match to protein family HMM PF09580
YP_002369771.1	identified by match to protein family HMM PF00376; match to protein family HMM PF07739; match to protein family HMM PF09278
YP_002369773.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369774.1	identified by match to protein family HMM PF00300
YP_002369775.1	identified by match to protein family HMM PF04073
YP_002369776.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_002369777.1	identified by match to protein family HMM PF01551
YP_002369778.1	identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832
YP_002369779.1	identified by match to protein family HMM PF08827
YP_002369781.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980
YP_002369782.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_002369783.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_002369784.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981
YP_002369785.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_002369786.1	identified by match to protein family HMM PF03180
YP_002369787.1	identified by match to protein family HMM PF03180
YP_002369788.1	identified by match to protein family HMM PF00528
YP_002369789.1	identified by match to protein family HMM PF00005; match to protein family HMM PF09383
YP_002369790.1	identified by glimmer
YP_002369792.1	identified by match to protein family HMM PF01751
YP_002369794.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_002369795.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_002369799.1	Converts (S)-lactate and NAD(+) to pyruvate and NADH
YP_002369800.1	identified by glimmer
YP_002369801.1	identified by match to protein family HMM PF07875
YP_002369803.1	identified by match to protein family HMM PF02517
YP_002369804.1	identified by match to protein family HMM PF00440
YP_002369805.1	identified by match to protein family HMM PF00753
YP_002369806.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002369807.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002369808.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002369809.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_002369810.1	identified by glimmer
YP_002369811.1	identified by match to protein family HMM PF00768; match to protein family HMM PF00905
YP_002369812.1	identified by match to protein family HMM PF01619
YP_002369814.1	identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106
YP_002369815.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_002369816.1	identified by match to protein family HMM PF01978
YP_002369819.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002369822.1	identified by match to protein family HMM PF00324
YP_002369823.1	identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766
YP_002369825.1	involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site
YP_002369826.1	identified by glimmer
YP_002369827.1	identified by match to protein family HMM PF02588
YP_002369828.1	identified by match to protein family HMM PF00583
YP_002369829.1	identified by glimmer
YP_002369831.1	identified by glimmer
YP_002369833.1	identified by glimmer
YP_002369834.1	identified by match to protein family HMM PF01381
YP_002369835.1	identified by match to protein family HMM PF09335
YP_002369836.1	identified by glimmer
YP_002369837.1	identified by match to protein family HMM PF03734
YP_002369838.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369839.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002369840.1	identified by match to protein family HMM PF00892
YP_002369842.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002369843.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002369844.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002369845.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002369846.1	identified by match to protein family HMM PF01883
YP_002369847.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002369848.1	identified by match to protein family HMM PF02678
YP_002369849.1	identified by match to protein family HMM PF01047
YP_002369850.1	identified by glimmer
YP_002369851.1	identified by match to protein family HMM PF09335
YP_002369852.1	identified by match to protein family HMM PF00999
YP_002369853.1	identified by match to protein family HMM PF02080
YP_002369854.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002369855.1	identified by match to protein family HMM PF00210
YP_002369856.1	identified by glimmer
YP_002369858.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_002369859.1	identified by match to protein family HMM PF03819
YP_002369860.1	identified by match to protein family HMM PF00210
YP_002369862.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_002369863.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_002369864.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002369865.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002369869.1	identified by match to protein family HMM PF00248
YP_002369870.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002369871.1	identified by match to protein family HMM PF01638
YP_002369873.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_002369874.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002369875.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002369877.1	identified by match to protein family HMM PF00015
YP_002369878.1	identified by match to protein family HMM PF03372
YP_002369879.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_002369880.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_002369881.1	identified by glimmer
YP_002369883.1	identified by match to protein family HMM PF00583
YP_002369884.1	identified by match to protein family HMM PF06146
YP_002369885.1	identified by match to protein family HMM PF08378
YP_002369887.1	identified by match to protein family HMM PF01047
YP_002369889.1	identified by match to protein family HMM PF01289
YP_002369890.1	identified by match to protein family HMM PF00005
YP_002369891.1	identified by match to protein family HMM PF01032
YP_002369892.1	identified by match to protein family HMM PF01032
YP_002369893.1	identified by match to protein family HMM PF01497
YP_002369894.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002369895.1	identified by glimmer
YP_002369896.1	identified by match to protein family HMM PF05163
YP_002369897.1	identified by match to protein family HMM PF08279
YP_002369899.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002369900.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_002369902.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_002369903.1	identified by match to protein family HMM PF04172
YP_002369904.1	increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB
YP_002369905.1	identified by match to protein family HMM PF01156
YP_002369906.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002369907.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_002369908.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002369909.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002369910.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_002369911.1	identified by match to protein family HMM PF04198
YP_002369912.1	identified by match to protein family HMM PF05768
YP_002369913.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_002369915.1	identified by match to protein family HMM PF00005
YP_002369916.1	identified by glimmer
YP_002369917.1	identified by match to protein family HMM PF02518
YP_002369918.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_002369919.1	identified by match to protein family HMM PF07870
YP_002369921.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838
YP_002369922.1	identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845
YP_002369923.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839
YP_002369924.1	identified by match to protein family HMM PF07870
YP_002369925.1	identified by match to protein family HMM PF04239; match to protein family HMM PF07870
YP_002369926.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002369927.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_002369928.1	identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_002369929.1	identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826
YP_002369930.1	identified by match to protein family HMM PF03668
YP_002369931.1	identified by match to protein family HMM PF00293
YP_002369932.1	identified by match to protein family HMM PF04018
YP_002369933.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_002369934.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002369935.1	identified by match to protein family HMM PF00132
YP_002369936.1	hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation
YP_002369937.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002369938.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_002369939.1	identified by match to protein family HMM PF04020
YP_002369940.1	identified by glimmer
YP_002369941.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_002369942.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_002369945.1	identified by match to protein family HMM PF00376
YP_002369947.1	identified by match to protein family HMM PF01381
YP_002369948.1	identified by match to protein family HMM PF03601
YP_002369949.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002369950.1	identified by match to protein family HMM PF00376
YP_002369951.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_002369952.1	identified by match to protein family HMM PF00005
YP_002369953.1	identified by match to protein family HMM PF01906
YP_002369954.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002369956.1	identified by match to protein family HMM PF00595; match to protein family HMM PF01471; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_002369957.1	identified by match to protein family HMM PF02687
YP_002369958.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673
YP_002369960.1	identified by glimmer
YP_002369962.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002369963.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_002369965.1	identified by match to protein family HMM PF00313
YP_002369967.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_002369968.1	identified by glimmer
YP_002369969.1	identified by match to protein family HMM PF00877
YP_002369970.1	identified by match to protein family HMM PF01638
YP_002369971.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_002369972.1	identified by glimmer
YP_002369973.1	identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257
YP_002369974.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002369975.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_002369976.1	identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_002369977.1	identified by match to protein family HMM PF00953
YP_002369978.1	identified by match to protein family HMM PF01522
YP_002369979.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728
YP_002369980.1	identified by match to protein family HMM PF07452
YP_002369981.1	identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937
YP_002369982.1	identified by match to protein family HMM PF04794
YP_002369983.1	identified by match to protein family HMM PF02056
YP_002369984.1	identified by match to protein family HMM PF02255
YP_002369985.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410
YP_002369986.1	identified by match to protein family HMM PF02302
YP_002369987.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_002369988.1	Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_002369989.1	identified by match to protein family HMM PF02255
YP_002369990.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410
YP_002369991.1	identified by match to protein family HMM PF02302; match to protein family HMM TIGR00853
YP_002369992.1	identified by match to protein family HMM PF00375
YP_002369994.1	identified by match to protein family HMM PF00903
YP_002369995.1	identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_002369996.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002369999.1	identified by match to protein family HMM PF01654
YP_002370001.1	identified by match to protein family HMM PF02040; match to protein family HMM PF03600
YP_002370002.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_002370003.1	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_002370006.1	identified by match to protein family HMM PF06803
YP_002370007.1	identified by match to protein family HMM PF00884
YP_002370008.1	identified by glimmer
YP_002370009.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002370010.1	catalyzes the transamination of D-amino acids and their alpha-keto acids
YP_002370011.1	identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_002370012.1	identified by glimmer
YP_002370013.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_002370015.1	identified by match to protein family HMM PF00535
YP_002370016.1	identified by glimmer
YP_002370017.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_002370018.1	identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239
YP_002370019.1	identified by glimmer
YP_002370023.1	identified by match to protein family HMM PF04434
YP_002370024.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271
YP_002370026.1	identified by match to protein family HMM PF07872
YP_002370027.1	identified by glimmer
YP_002370029.1	identified by match to protein family HMM PF06338
YP_002370030.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002370032.1	identified by match to protein family HMM PF02687
YP_002370033.1	identified by match to protein family HMM PF00005
YP_002370034.1	identified by match to protein family HMM TIGR01730
YP_002370035.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881
YP_002370038.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002370039.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002370041.1	attenuator function for control of operon expression
YP_002370042.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_002370043.1	identified by match to protein family HMM PF00534
YP_002370044.1	identified by match to protein family HMM PF00534
YP_002370045.1	identified by glimmer
YP_002370046.1	identified by match to protein family HMM PF00534
YP_002370047.1	identified by match to protein family HMM PF01943
YP_002370048.1	identified by match to protein family HMM PF02397
YP_002370049.1	identified by match to protein family HMM PF02811
YP_002370050.1	identified by match to protein family HMM TIGR01007
YP_002370051.1	identified by match to protein family HMM PF02706
YP_002370052.1	identified by match to protein family HMM TIGR01007
YP_002370053.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_002370054.1	identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904
YP_002370056.1	identified by glimmer
YP_002370057.1	identified by match to protein family HMM PF01551
YP_002370058.1	identified by match to protein family HMM PF01061
YP_002370059.1	identified by match to protein family HMM PF00005
YP_002370060.1	identified by match to protein family HMM PF00005; match to protein family HMM PF04397
YP_002370061.1	identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870
YP_002370062.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002370063.1	identified by match to protein family HMM PF08680
YP_002370064.1	identified by match to protein family HMM PF06612; match to protein family HMM TIGR02327
YP_002370065.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002370066.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002370067.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002370068.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002370069.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002370070.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002370071.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002370072.1	catalyzes the transfer of electrons from NADH to ubiquinone
YP_002370073.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002370074.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_002370075.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002370076.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002370077.1	identified by match to protein family HMM PF06161
YP_002370078.1	identified by match to protein family HMM PF06161
YP_002370079.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_002370080.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_002370081.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_002370082.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002370083.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002370084.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_002370085.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_002370086.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_002370087.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_002370088.1	identified by match to protein family HMM PF05468
YP_002370090.1	identified by glimmer
YP_002370091.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_002370092.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002370093.1	identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440
YP_002370094.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_002370095.1	identified by match to protein family HMM PF01451
YP_002370096.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_002370097.1	identified by match to protein family HMM PF07681
YP_002370099.1	identified by glimmer
YP_002370101.1	identified by match to protein family HMM PF02659
YP_002370102.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_002370104.1	identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837
YP_002370105.1	identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; match to protein family HMM TIGR03534
YP_002370106.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002370107.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_002370108.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_002370109.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_002370110.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_002370111.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002370112.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_002370113.1	identified by match to protein family HMM PF00072
YP_002370115.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002370116.1	participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
YP_002370117.1	identified by match to protein family HMM PF00440
YP_002370118.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002370119.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002370120.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_002370121.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002370122.1	identified by match to protein family HMM PF02754
YP_002370123.1	identified by match to protein family HMM PF00614
YP_002370124.1	identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629
YP_002370125.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002370126.1	identified by match to protein family HMM PF05968
YP_002370127.1	identified by match to protein family HMM PF01381
YP_002370128.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002370129.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04967; match to protein family HMM PF08281
YP_002370130.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002370131.1	identified by match to protein family HMM PF01061
YP_002370132.1	identified by match to protein family HMM PF00005
YP_002370133.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential
YP_002370134.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002370135.1	identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389
YP_002370136.1	identified by glimmer
YP_002370139.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002370140.1	identified by match to protein family HMM PF09148
YP_002370141.1	identified by match to protein family HMM PF02016
YP_002370142.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002370144.1	identified by glimmer
YP_002370145.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230
YP_002370146.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_002370147.1	identified by match to protein family HMM PF07690
YP_002370148.1	identified by match to protein family HMM PF00376
YP_002370149.1	identified by glimmer
YP_002370150.1	identified by match to protein family HMM PF03009
YP_002370151.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002370152.1	identified by match to protein family HMM PF08741
YP_002370153.1	identified by match to protein family HMM PF02163
YP_002370154.1	identified by glimmer
YP_002370155.1	4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown
YP_002370156.1	identified by match to protein family HMM PF01966
YP_002370157.1	identified by match to protein family HMM PF01497
YP_002370158.1	identified by match to protein family HMM PF00005
YP_002370159.1	identified by match to protein family HMM PF01032
YP_002370160.1	identified by match to protein family HMM PF01032
YP_002370162.1	identified by match to protein family HMM TIGR02894
YP_002370163.1	identified by match to protein family HMM PF03099
YP_002370164.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_002370165.1	identified by match to protein family HMM PF06778
YP_002370166.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_002370167.1	identified by match to protein family HMM PF07486
YP_002370168.1	identified by match to protein family HMM PF09671; match to protein family HMM TIGR02728
YP_002370169.1	identified by match to protein family HMM PF04241
YP_002370171.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885
YP_002370172.1	identified by match to protein family HMM PF00860
YP_002370173.1	identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002370175.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_002370177.1	identified by match to protein family HMM PF00005
YP_002370178.1	identified by match to protein family HMM PF00657
YP_002370179.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002370180.1	identified by match to protein family HMM PF02588
YP_002370181.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002370182.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_002370183.1	catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
YP_002370184.1	identified by match to protein family HMM PF00654
YP_002370185.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254
YP_002370186.1	activator of nucleoside metabolism
YP_002370187.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_002370188.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_002370189.1	identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002370190.1	catalyzes the phosphorylation of three vitamin B6 precursors, pyridoxal, pyridoxine and pyridoxamine
YP_002370191.1	identified by match to protein family HMM PF00990; match to protein family HMM PF07694; match to protein family HMM TIGR00254
YP_002370192.1	identified by match to protein family HMM PF04328
YP_002370193.1	identified by match to protein family HMM PF02554
YP_002370194.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_002370195.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00362
YP_002370196.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002370197.1	identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_002370198.1	identified by match to protein family HMM PF00534
YP_002370200.1	identified by match to protein family HMM PF03458
YP_002370201.1	identified by match to protein family HMM PF00015
YP_002370203.1	identified by match to protein family HMM PF03061
YP_002370204.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002370205.1	identified by match to protein family HMM PF00535
YP_002370206.1	identified by match to protein family HMM PF01943
YP_002370207.1	identified by match to protein family HMM PF09586
YP_002370208.1	identified by match to protein family HMM PF00535
YP_002370209.1	identified by match to protein family HMM PF00005
YP_002370210.1	identified by match to protein family HMM PF03062
YP_002370212.1	identified by match to protein family HMM PF00440
YP_002370213.1	identified by match to protein family HMM PF00873
YP_002370214.1	identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401
YP_002370215.1	identified by match to protein family HMM PF01594
YP_002370216.1	in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases
YP_002370217.1	negatively regulates murein hydrolase activity
YP_002370218.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_002370219.1	identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694
YP_002370220.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002370221.1	identified by match to protein family HMM PF02028
YP_002370222.1	identified by match to protein family HMM PF02898
YP_002370223.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_002370224.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993
YP_002370225.1	identified by match to protein family HMM PF02293
YP_002370226.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_002370227.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_002370228.1	identified by match to protein family HMM PF08876
YP_002370229.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_002370230.1	identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306
YP_002370231.1	identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181
YP_002370232.1	identified by match to protein family HMM PF04055
YP_002370233.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_002370234.1	SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_002370236.1	identified by match to protein family HMM PF00089
YP_002370237.1	identified by match to protein family HMM PF00753
YP_002370238.1	identified by match to protein family HMM PF09648
YP_002370239.1	identified by match to protein family HMM PF07435
YP_002370240.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_002370241.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002370242.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_002370243.1	unwinds double stranded DNA
YP_002370244.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002370245.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_002370247.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002370248.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_002370249.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002370250.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_002370251.1	identified by match to protein family HMM PF06107
YP_002370252.1	identified by match to protein family HMM PF00924
YP_002370253.1	identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841
YP_002370254.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_002370255.1	identified by match to protein family HMM PF01656
YP_002370256.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_002370257.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_002370258.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002370259.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002370260.1	identified by match to protein family HMM PF01424
YP_002370261.1	involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; necessary for sporulation
YP_002370262.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_002370263.1	in Escherichia coli transcription of this gene is enhanced by polyamines