-- dump date 20140618_222719 -- class Genbank::CDS -- table cds_note -- id note YP_006229797.1 COGmatches:COG0593 ATPase involved in DNA replication initiation; PfamMatches:PF00308.12 YP_006229798.1 COGmatches:COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); PfamMatches:PF00712.13 YP_006229799.1 COGmatches:COG2501 Uncharacterized conserved protein YP_006229800.1 COGmatches:COG1195 Recombinational DNA repair ATPase (RecF pathway); PfamMatches:PF02463.13 YP_006229802.1 'COGmatches:COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; PfamMatches:PF00204.19' YP_006229803.1 'COGmatches:COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; PfamMatches:PF00521.1' YP_006229805.1 COGmatches:COG0516 IMP dehydrogenase/GMP reductase; PfamMatches:PF00478.19 YP_006229806.1 COGmatches:COG1686 D-alanyl-D-alanine carboxypeptidase; PfamMatches:PF00768.14 YP_006229807.1 COGmatches:COG0214 Pyridoxine biosynthesis enzyme; PfamMatches:PF01680.11; TIGRfamMatches:TIGR00343 YP_006229808.1 COGmatches:COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis; PfamMatches:PF01174.1 YP_006229809.1 COGmatches:COG0172 Seryl-tRNA synthetase; PfamMatches:PF00587.19 YP_006229810.1 COGmatches:COG1428 Deoxynucleoside kinases; PfamMatches:PF01712.13 YP_006229811.1 COGmatches:COG1428 Deoxynucleoside kinases; PfamMatches:PF01712.13 YP_006229812.1 COGmatches:COG3858 Predicted glycosyl hydrolase; PfamMatches:PF00704.22 YP_006229813.1 COGmatches:COG1335 Amidases related to nicotinamidase; PfamMatches:PF00857.14 YP_006229814.1 COGmatches:COG0590 Cytosine/adenosine deaminases; PfamMatches:PF00383.1 YP_006229815.1 'COGmatches:COG2812 DNA polymerase III, gamma/tau subunits; PfamMatches:PF12169.2' YP_006229816.1 COGmatches:COG0718 Uncharacterized protein conserved in bacteria; PfamMatches:PF02575.10 YP_006229817.1 COGmatches:COG0353 Recombinational DNA repair protein (RecF pathway); PfamMatches:PF02132.9 YP_006229818.1 PfamMatches:PF10704.3 YP_006229819.1 PfamMatches:PF07441.5 YP_006229820.1 PfamMatches:PF10764.3 YP_006229821.1 COGmatches:COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein; PfamMatches:PF10112.3 YP_006229822.1 COGmatches:COG3853 Uncharacterized protein involved in tellurite resistance; PfamMatches:PF05816.5 YP_006229823.1 COGmatches:COG1982 Arginine/lysine/ornithine decarboxylases; PfamMatches:PF01276.14 YP_006229824.1 COGmatches:COG0125 Thymidylate kinase; PfamMatches:PF02223.11 YP_006229825.1 COGmatches:COG3870 Uncharacterized protein conserved in bacteria; PfamMatches:PF06153.5 YP_006229826.1 COGmatches:COG1728 Uncharacterized protein conserved in bacteria; PfamMatches:PF03885.7 YP_006229827.1 COGmatches:COG0470 ATPase involved in DNA replication YP_006229828.1 COGmatches:COG1774 Uncharacterized homolog of PSP1; PfamMatches:PF04468.6 YP_006229829.1 COGmatches:COG4467 Uncharacterized protein conserved in bacteria; PfamMatches:PF06156.7 YP_006229830.1 COGmatches:COG4123 Predicted O-methyltransferase; PfamMatches:PF05175.8 YP_006229831.1 COGmatches:COG2827 Predicted endonuclease containing a URI domain; PfamMatches:PF01541.18 YP_006229832.1 COGmatches:COG0313 Predicted methyltransferases; PfamMatches:PF00590.14; TIGRfamMatches:TIGR00096 YP_006229833.1 COGmatches:COG2002 Regulators of stationary/sporulation gene expression; PfamMatches:PF04014.12 YP_006229834.1 COGmatches:COG0143 Methionyl-tRNA synthetase; PfamMatches:PF09334.5 YP_006229835.1 COGmatches:COG0084 Mg-dependent DNase; PfamMatches:PF01026.15; TIGRfamMatches:TIGR00010 YP_006229836.1 COGmatches:COG3583 Uncharacterized protein conserved in bacteria; PfamMatches:PF03990.8 YP_006229837.1 COGmatches:COG1658 Small primase-like proteins (Toprim domain); PfamMatches:PF01751.16 YP_006229838.1 COGmatches:COG0030 Dimethyladenosine transferase (rRNA methylation); PfamMatches:PF00398.14 YP_006229839.1 COGmatches:COG4466 Uncharacterized protein conserved in bacteria; PfamMatches:PF06257.5 YP_006229840.1 PfamMatches:PF00269.14 YP_006229841.1 COGmatches:COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; PfamMatches:PF00288.20 YP_006229842.1 COGmatches:COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; PfamMatches:PF09182.4 YP_006229843.1 'COGmatches:COG0251 Putative translation initiation inhibitor, yjgF family; PfamMatches:PF01042.15; TIGRfamMatches:TIGR00004' YP_006229844.1 'COGmatches:COG2088 Uncharacterized protein, involved in the regulation of septum location; PfamMatches:PF04026.6' YP_006229846.1 COGmatches:COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); PfamMatches:PF00132.18 YP_006229847.1 COGmatches:COG0462 Phosphoribosylpyrophosphate synthetase; PfamMatches:PF00156.21 YP_006229848.1 COGmatches:COG0193 Peptidyl-tRNA hydrolase; PfamMatches:PF01195.13 YP_006229849.1 PfamMatches:PF10955.2 YP_006229850.1 COGmatches:COG1197 Transcription-repair coupling factor (superfamily II helicase); PfamMatches:PF02559.10 YP_006229851.1 COGmatches:COG2002 Regulators of stationary/sporulation gene expression; PfamMatches:PF04014.12 YP_006229852.1 COGmatches:COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; PfamMatches:PF01943.11 YP_006229853.1 COGmatches:COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; PfamMatches:PF03819.11 YP_006229854.1 COGmatches:COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); PfamMatches:PF01479.19 YP_006229855.1 PfamMatches:PF07873.5 YP_006229856.1 PfamMatches:PF09578.4 YP_006229857.1 COGmatches:COG1098 Predicted RNA binding protein (contains ribosomal protein S1 domain); PfamMatches:PF00575.17 YP_006229858.1 'COGmatches:COG2208 Serine phosphatase RsbU, regulator of sigma subunit; PfamMatches:PF07228.6' YP_006229859.1 COGmatches:COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain YP_006229860.1 COGmatches:COG0515 Serine/threonine protein kinase; PfamMatches:PF00069.19 YP_006229861.1 COGmatches:COG0634 Hypoxanthine-guanine phosphoribosyltransferase; PfamMatches:PF00156.21 YP_006229862.1 COGmatches:COG0465 ATP-dependent Zn proteases; PfamMatches:PF01434.12 YP_006229863.1 'COGmatches:COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor; PfamMatches:PF03309.8' YP_006229864.1 COGmatches:COG1281 Disulfide bond chaperones of the HSP33 family; PfamMatches:PF01430.13 YP_006229865.1 COGmatches:COG0760 Parvulin-like peptidyl-prolyl isomerase; PfamMatches:PF00639.15 YP_006229866.1 COGmatches:COG0031 Cysteine synthase; PfamMatches:PF00291.19 YP_006229867.1 COGmatches:COG0147 Anthranilate/para-aminobenzoate synthases component I; PfamMatches:PF00425.12 YP_006229868.1 COGmatches:COG0512 Anthranilate/para-aminobenzoate synthases component II; PfamMatches:PF00117.22 YP_006229869.1 COGmatches:COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PfamMatches:PF01063.13 YP_006229870.1 COGmatches:COG0294 Dihydropteroate synthase and related enzymes; PfamMatches:PF00809.16 YP_006229871.1 COGmatches:COG1539 Dihydroneopterin aldolase; PfamMatches:PF02152.12 YP_006229872.1 'COGmatches:COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; PfamMatches:PF01288.14' YP_006229873.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF01381.16 YP_006229874.1 COGmatches:COG0042 tRNA-dihydrouridine synthase; PfamMatches:PF01207.11 YP_006229875.1 COGmatches:COG1190 Lysyl-tRNA synthetase (class II); PfamMatches:PF00152.14 YP_006229878.1 COGmatches:COG4463 Transcriptional repressor of class III stress genes; PfamMatches:PF05848.5 YP_006229879.1 COGmatches:COG3880 Uncharacterized protein with conserved CXXC pairs; PfamMatches:PF02151.13 YP_006229880.1 COGmatches:COG3869 Arginine kinase; PfamMatches:PF00217.13 YP_006229881.1 'COGmatches:COG0542 ATPases with chaperone activity, ATP-binding subunit; PfamMatches:PF07724.8' YP_006229882.1 COGmatches:COG1066 Predicted ATP-dependent serine protease; PfamMatches:PF06745.7 YP_006229883.1 COGmatches:COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain); PfamMatches:PF10635.3 YP_006229884.1 COGmatches:COG4956 Integral membrane protein (PIN domain superfamily); PfamMatches:PF01850.15 YP_006229885.1 COGmatches:COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; PfamMatches:PF01128.13 YP_006229886.1 'COGmatches:COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PfamMatches:PF02542.10' YP_006229887.1 COGmatches:COG0008 Glutamyl- and glutaminyl-tRNA synthetases; PfamMatches:PF00749.15 YP_006229890.1 COGmatches:COG1045 Serine acetyltransferase; PfamMatches:PF00132.18 YP_006229891.1 COGmatches:COG0215 Cysteinyl-tRNA synthetase; PfamMatches:PF01406.13 YP_006229892.1 COGmatches:COG1939 Uncharacterized protein conserved in bacteria; PfamMatches:PF00636.20 YP_006229893.1 COGmatches:COG0566 rRNA methylases; PfamMatches:PF00588.13 YP_006229894.1 COGmatches:COG3688 Predicted RNA-binding protein containing a PIN domain; PfamMatches:PF05991.5 YP_006229895.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF04542.8' YP_006229896.1 COGmatches:COG0690 Preprotein translocase subunit SecE; PfamMatches:PF00584.14 YP_006229897.1 COGmatches:COG0250 Transcription antiterminator; PfamMatches:PF02357.13 YP_006229898.1 COGmatches:COG0080 Ribosomal protein L11; PfamMatches:PF03946.8 YP_006229899.1 COGmatches:COG0081 Ribosomal protein L1; PfamMatches:PF00687.15 YP_006229900.1 COGmatches:COG0244 Ribosomal protein L10; PfamMatches:PF00466.14 YP_006229901.1 COGmatches:COG0222 Ribosomal protein L7/L12; PfamMatches:PF00542.13 YP_006229902.1 COGmatches:COG2813 16S RNA G1207 methylase RsmC; PfamMatches:PF05175.8 YP_006229903.1 'COGmatches:COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; PfamMatches:PF00562.22' YP_006229904.1 'COGmatches:COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; PfamMatches:PF04997.6' YP_006229905.1 COGmatches:COG1358 Ribosomal protein HS6-type (S12/L30/L7a); PfamMatches:PF01248.20 YP_006229906.1 COGmatches:COG0048 Ribosomal protein S12; PfamMatches:PF00164.19 YP_006229907.1 COGmatches:COG0049 Ribosomal protein S7; PfamMatches:PF00177.15 YP_006229908.1 COGmatches:COG0480 Translation elongation factors (GTPases); PfamMatches:PF00009.21 YP_006229909.1 COGmatches:COG0050 GTPases - translation elongation factors; PfamMatches:PF00009.21 YP_006229910.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006229911.1 COGmatches:COG0051 Ribosomal protein S10; PfamMatches:PF00338.16 YP_006229912.1 COGmatches:COG0087 Ribosomal protein L3; PfamMatches:PF00297.16 YP_006229913.1 COGmatches:COG0088 Ribosomal protein L4; PfamMatches:PF00573.16 YP_006229914.1 COGmatches:COG0089 Ribosomal protein L23; PfamMatches:PF00276.14 YP_006229915.1 COGmatches:COG0090 Ribosomal protein L2; PfamMatches:PF03947.12 YP_006229916.1 COGmatches:COG0185 Ribosomal protein S19; PfamMatches:PF00203.15 YP_006229917.1 COGmatches:COG0091 Ribosomal protein L22; PfamMatches:PF00237.13 YP_006229918.1 COGmatches:COG0092 Ribosomal protein S3; PfamMatches:PF00189.14 YP_006229919.1 COGmatches:COG0197 Ribosomal protein L16/L10E; PfamMatches:PF00252.12 YP_006229920.1 COGmatches:COG0255 Ribosomal protein L29; PfamMatches:PF00831.17 YP_006229921.1 COGmatches:COG0186 Ribosomal protein S17; PfamMatches:PF00366.14 YP_006229922.1 COGmatches:COG0093 Ribosomal protein L14; PfamMatches:PF00238.13 YP_006229923.1 COGmatches:COG0198 Ribosomal protein L24; PfamMatches:PF00467.23 YP_006229924.1 COGmatches:COG0094 Ribosomal protein L5; PfamMatches:PF00673.15 YP_006229925.1 COGmatches:COG0199 Ribosomal protein S14; PfamMatches:PF00253.15 YP_006229926.1 COGmatches:COG0096 Ribosomal protein S8; PfamMatches:PF00410.13 YP_006229927.1 COGmatches:COG0097 Ribosomal protein L6P/L9E; PfamMatches:PF00347.17 YP_006229928.1 COGmatches:COG0256 Ribosomal protein L18; PfamMatches:PF00861.16 YP_006229929.1 COGmatches:COG0098 Ribosomal protein S5; PfamMatches:PF00333.14 YP_006229930.1 COGmatches:COG1841 Ribosomal protein L30/L7E; PfamMatches:PF00327.14 YP_006229931.1 COGmatches:COG0200 Ribosomal protein L15; PfamMatches:PF00828.13 YP_006229932.1 COGmatches:COG0201 Preprotein translocase subunit SecY; PfamMatches:PF00344.14 YP_006229933.1 COGmatches:COG0563 Adenylate kinase and related kinases; PfamMatches:PF00406.16 YP_006229934.1 COGmatches:COG0024 Methionine aminopeptidase; PfamMatches:PF00557.1 YP_006229935.1 COGmatches:COG2163 Ribosomal protein L14E/L6E/L27E YP_006229936.1 COGmatches:COG0361 Translation initiation factor 1 (IF-1); PfamMatches:PF01176.13 YP_006229937.1 COGmatches:COG0257 Ribosomal protein L36; PfamMatches:PF00444.12 YP_006229938.1 COGmatches:COG0099 Ribosomal protein S13; PfamMatches:PF00416.16 YP_006229939.1 COGmatches:COG0100 Ribosomal protein S11; PfamMatches:PF00411.13 YP_006229940.1 'COGmatches:COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; PfamMatches:PF03118.9' YP_006229941.1 COGmatches:COG0203 Ribosomal protein L17; PfamMatches:PF01196.13 YP_006229942.1 'COGmatches:COG1122 ABC-type cobalt transport system, ATPase component; PfamMatches:PF00005.21' YP_006229943.1 'COGmatches:COG1122 ABC-type cobalt transport system, ATPase component; PfamMatches:PF00005.21' YP_006229944.1 'COGmatches:COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; PfamMatches:PF02361.10' YP_006229945.1 COGmatches:COG0101 Pseudouridylate synthase; PfamMatches:PF01416.14 YP_006229946.1 COGmatches:COG0102 Ribosomal protein L13; PfamMatches:PF00572.12 YP_006229947.1 COGmatches:COG0103 Ribosomal protein S9; PfamMatches:PF00380.13 YP_006229948.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF08241.6 YP_006229949.1 PfamMatches:PF10730.3 YP_006229950.1 COGmatches:COG0860 N-acetylmuramoyl-L-alanine amidase; PfamMatches:PF01520.12 YP_006229951.1 COGmatches:COG0489 ATPases involved in chromosome partitioning; PfamMatches:PF10609.3 YP_006229954.1 COGmatches:COG0726 Predicted xylanase/chitin deacetylase; PfamMatches:PF01522.15 YP_006229955.1 COGmatches:COG0738 Fucose permease; PfamMatches:PF07690.10 YP_006229956.1 COGmatches:COG0160 4-aminobutyrate aminotransferase and related aminotransferases; PfamMatches:PF00202.15 YP_006229957.1 'COGmatches:COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; PfamMatches:PF00459.19' YP_006229958.1 COGmatches:COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; PfamMatches:PF08240.6 YP_006229959.1 COGmatches:COG0659 Sulfate permease and related transporters (MFS superfamily); PfamMatches:PF00916.14 YP_006229960.1 COGmatches:COG0385 Predicted Na+-dependent transporter; PfamMatches:PF01758.10 YP_006229961.1 COGmatches:COG2819 Predicted hydrolase of the alpha/beta superfamily; PfamMatches:PF00756.14 YP_006229962.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006229963.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006229964.1 'COGmatches:COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PfamMatches:PF01497.12' YP_006229965.1 'COGmatches:COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PfamMatches:PF12833.1' YP_006229966.1 COGmatches:COG3876 Uncharacterized protein conserved in bacteria; PfamMatches:PF07075.5 YP_006229967.1 COGmatches:COG1472 Beta-glucosidase-related glycosidases; PfamMatches:PF00933.15 YP_006229968.1 COGmatches:COG1680 Beta-lactamase class C and other penicillin binding proteins; PfamMatches:PF00144.18 YP_006229969.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF02378.12' YP_006229970.1 COGmatches:COG1737 Transcriptional regulators; PfamMatches:PF01418.11 YP_006229971.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_006229972.1 COGmatches:COG1683 Uncharacterized conserved protein; PfamMatches:PF04463.6 YP_006229973.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF04542.8' YP_006229974.1 COGmatches:COG5662 Predicted transmembrane transcriptional regulator (anti-sigma factor); PfamMatches:PF04519.7 YP_006229975.1 COGmatches:COG1624 Uncharacterized conserved protein; PfamMatches:PF02457.10; TIGRfamMatches:TIGR00159 YP_006229976.1 COGmatches:COG4856 Uncharacterized protein conserved in bacteria; PfamMatches:PF07949.6 YP_006229977.1 COGmatches:COG1109 Phosphomannomutase; PfamMatches:PF02878.10 YP_006229979.1 'COGmatches:COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; PfamMatches:PF01380.16' YP_006229980.1 COGmatches:COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; PfamMatches:PF00730.1 YP_006229982.1 COGmatches:COG2169 Adenosine deaminase; PfamMatches:PF02805.1 YP_006229983.1 COGmatches:COG0350 Methylated DNA-protein cysteine methyltransferase; PfamMatches:PF01035.1 YP_006229984.1 'COGmatches:COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; PfamMatches:PF00361.14' YP_006229985.1 COGmatches:COG3002 Uncharacterized protein conserved in bacteria; PfamMatches:PF10070.3 YP_006229986.1 COGmatches:COG0288 Carbonic anhydrase; PfamMatches:PF00484.13 YP_006229988.1 COGmatches:COG5609 Uncharacterized conserved protein; PfamMatches:PF10057.3 YP_006229989.1 COGmatches:COG0640 Predicted transcriptional regulators; PfamMatches:PF12840.1 YP_006229991.1 COGmatches:COG2814 Arabinose efflux permease; PfamMatches:PF07690.10 YP_006229993.1 COGmatches:COG0789 Predicted transcriptional regulators; PfamMatches:PF00376.17 YP_006229994.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006229995.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006229996.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF00672.19 YP_006229998.1 COGmatches:COG0515 Serine/threonine protein kinase; PfamMatches:PF00069.19 YP_006230001.1 COGmatches:COG1113 Gamma-aminobutyrate permease and related permeases; PfamMatches:PF00324.15 YP_006230004.1 COGmatches:COG2602 Beta-lactamase class D; PfamMatches:PF00905.16 YP_006230005.1 COGmatches:COG2124 Cytochrome P450; PfamMatches:PF00067.16 YP_006230008.1 COGmatches:COG0531 Amino acid transporters; PfamMatches:PF00324.15 YP_006230009.1 COGmatches:COG1283 Na+/phosphate symporter; PfamMatches:PF02690.9 YP_006230010.1 COGmatches:COG0584 Glycerophosphoryl diester phosphodiesterase; PfamMatches:PF03009.11 YP_006230011.1 COGmatches:COG2271 Sugar phosphate permease; PfamMatches:PF07690.10 YP_006230012.1 PfamMatches:PF10852.2 YP_006230013.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006230014.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230016.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006230017.1 COGmatches:COG2207 AraC-type DNA-binding domain-containing proteins; PfamMatches:PF02311.13 YP_006230020.1 COGmatches:COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase); PfamMatches:PF02222.16 YP_006230021.1 COGmatches:COG3591 V8-like Glu-specific endopeptidase; PfamMatches:PF00089.20 YP_006230022.1 PfamMatches:PF10794.3 YP_006230023.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006230024.1 COGmatches:COG1183 Phosphatidylserine synthase; PfamMatches:PF01066.15 YP_006230025.1 COGmatches:COG0586 Uncharacterized membrane-associated protein; PfamMatches:PF09335.5 YP_006230026.1 COGmatches:COG0688 Phosphatidylserine decarboxylase; PfamMatches:PF02666.9 YP_006230028.1 COGmatches:COG2207 AraC-type DNA-binding domain-containing proteins YP_006230029.1 COGmatches:COG1054 Predicted sulfurtransferase; PfamMatches:PF12368.2 YP_006230030.1 COGmatches:COG1301 Na+/H+-dicarboxylate symporters; PfamMatches:PF00375.12 YP_006230031.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF02378.12' YP_006230032.1 COGmatches:COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; PfamMatches:PF01182.1 YP_006230033.1 COGmatches:COG2188 Transcriptional regulators; PfamMatches:PF07702.7 YP_006230034.1 COGmatches:COG5658 Predicted integral membrane protein; PfamMatches:PF07853.5 YP_006230036.1 COGmatches:COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PfamMatches:PF01063.13 YP_006230037.1 COGmatches:COG0833 Amino acid transporters; PfamMatches:PF00324.15 YP_006230038.1 COGmatches:COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent); PfamMatches:PF02574.10 YP_006230039.1 COGmatches:COG1115 Na+/alanine symporter; PfamMatches:PF01235.11 YP_006230040.1 COGmatches:COG2066 Glutaminase; PfamMatches:PF04960.9 YP_006230041.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006230042.1 PfamMatches:PF08664.4 YP_006230044.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006230045.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230046.1 COGmatches:COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; PfamMatches:PF01188.1 YP_006230047.1 COGmatches:COG2186 Transcriptional regulators; PfamMatches:PF00392.15 YP_006230048.1 COGmatches:COG2721 Altronate dehydratase; PfamMatches:PF04295.7 YP_006230050.1 COGmatches:COG3173 Predicted aminoglycoside phosphotransferase; PfamMatches:PF01636.17 YP_006230052.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006230053.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00486.22 YP_006230054.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006230055.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006230056.1 'COGmatches:COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; PfamMatches:PF12730.1' YP_006230057.1 PfamMatches:PF10710.3 YP_006230058.1 COGmatches:COG3773 Cell wall hydrolyses involved in spore germination; PfamMatches:PF07486.6 YP_006230062.1 COGmatches:COG3540 Phosphodiesterase/alkaline phosphatase D; PfamMatches:PF09423.4 YP_006230063.1 COGmatches:COG1826 Sec-independent protein secretion pathway components; PfamMatches:PF02416.10 YP_006230064.1 COGmatches:COG0805 Sec-independent protein secretion pathway component TatC; PfamMatches:PF00902.12 YP_006230065.1 COGmatches:COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase); PfamMatches:PF01470.1 YP_006230066.1 COGmatches:COG0520 Selenocysteine lyase; PfamMatches:PF00266.1 YP_006230067.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230068.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006230069.1 COGmatches:COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; PfamMatches:PF00710.14 YP_006230070.1 COGmatches:COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold; PfamMatches:PF01674.12 YP_006230071.1 COGmatches:COG1714 Predicted membrane protein/domain; PfamMatches:PF06271.6 YP_006230072.1 COGmatches:COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; PfamMatches:PF05225.10 YP_006230073.1 COGmatches:COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; PfamMatches:PF02518.20 YP_006230074.1 COGmatches:COG3279 Response regulator of the LytR/AlgR family; PfamMatches:PF00072.18 YP_006230075.1 'COGmatches:COG4555 ABC-type Na+ transport system, ATPase component; PfamMatches:PF00005.21' YP_006230076.1 'COGmatches:COG1668 ABC-type Na+ efflux pump, permease component; PfamMatches:PF12698.1' YP_006230077.1 COGmatches:COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); PfamMatches:PF00248.15 YP_006230078.1 PfamMatches:PF11611.2 YP_006230079.1 PfamMatches:PF03413.13 YP_006230082.1 PfamMatches:PF02557.11 YP_006230083.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF00515.22 YP_006230084.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006230085.1 COGmatches:COG0366 Glycosidases; PfamMatches:PF00128.18 YP_006230086.1 'COGmatches:COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; PfamMatches:PF01297.11' YP_006230087.1 'COGmatches:COG1121 ABC-type Mn/Zn transport systems, ATPase component; PfamMatches:PF00005.21' YP_006230088.1 'COGmatches:COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; PfamMatches:PF00950.11' YP_006230089.1 'COGmatches:COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; PfamMatches:PF00296.14' YP_006230090.1 'COGmatches:COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1; PfamMatches:PF02342.12' YP_006230091.1 'COGmatches:COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1; PfamMatches:PF02342.12' YP_006230092.1 'COGmatches:COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1; PfamMatches:PF02342.12' YP_006230093.1 'COGmatches:COG0861 Membrane protein TerC, possibly involved in tellurium resistance; PfamMatches:PF03741.10' YP_006230095.1 COGmatches:COG3853 Uncharacterized protein involved in tellurite resistance; PfamMatches:PF05816.5 YP_006230096.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230097.1 COGmatches:COG2814 Arabinose efflux permease; PfamMatches:PF07690.10 YP_006230098.1 COGmatches:COG0640 Predicted transcriptional regulators; PfamMatches:PF12840.1 YP_006230100.1 'COGmatches:COG4175 ABC-type proline/glycine betaine transport system, ATPase component; PfamMatches:PF00005.21' YP_006230101.1 'COGmatches:COG4176 ABC-type proline/glycine betaine transport system, permease component; PfamMatches:PF00528.16' YP_006230102.1 'COGmatches:COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components; PfamMatches:PF04069.6' YP_006230103.1 COGmatches:COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; PfamMatches:PF01546.22 YP_006230104.1 COGmatches:COG1288 Predicted membrane protein; PfamMatches:PF03606.9 YP_006230106.1 COGmatches:COG0366 Glycosidases; PfamMatches:PF00128.18 YP_006230108.1 COGmatches:COG0039 Malate/lactate dehydrogenases; PfamMatches:PF02866.1 YP_006230109.1 COGmatches:COG1620 L-lactate permease; PfamMatches:PF02652.8 YP_006230110.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230111.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230112.1 COGmatches:COG1280 Putative threonine efflux protein; PfamMatches:PF01810.12 YP_006230113.1 COGmatches:COG3403 Uncharacterized conserved protein; PfamMatches:PF08892.5 YP_006230114.1 COGmatches:COG1113 Gamma-aminobutyrate permease and related permeases; PfamMatches:PF00324.15 YP_006230115.1 COGmatches:COG3665 Uncharacterized conserved protein; PfamMatches:PF09347.4 YP_006230116.1 COGmatches:COG0171 NAD synthase; PfamMatches:PF02540.11 YP_006230119.1 COGmatches:COG0703 Shikimate kinase; PfamMatches:PF01202.16 YP_006230120.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF08241.6 YP_006230121.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006230122.1 COGmatches:COG3458 Acetyl esterase (deacetylase); PfamMatches:PF05448.1 YP_006230123.1 COGmatches:COG3541 Predicted nucleotidyltransferase; PfamMatches:PF10127.3 YP_006230124.1 COGmatches:COG0506 Proline dehydrogenase; PfamMatches:PF01619.12 YP_006230125.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006230126.1 COGmatches:COG0591 Na+/proline symporter; PfamMatches:PF00474.11 YP_006230127.1 COGmatches:COG2508 Regulator of polyketide synthase expression YP_006230128.1 COGmatches:COG3689 Predicted membrane protein; PfamMatches:PF09323.4; TIGRfamMatches:TIGR03943 YP_006230129.1 COGmatches:COG0701 Predicted permeases; PfamMatches:PF03773.7 YP_006230130.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006230131.1 COGmatches:COG0492 Thioredoxin reductase; PfamMatches:PF07992.8 YP_006230133.1 COGmatches:COG0007 Uroporphyrinogen-III methylase; PfamMatches:PF00590.14 YP_006230134.1 COGmatches:COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; PfamMatches:PF00355.20 YP_006230135.1 COGmatches:COG1251 NAD(P)H-nitrite reductase; PfamMatches:PF07992.8 YP_006230136.1 'COGmatches:COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; PfamMatches:PF00384.16' YP_006230137.1 COGmatches:COG1251 NAD(P)H-nitrite reductase; PfamMatches:PF07992.8 YP_006230138.1 COGmatches:COG2223 Nitrate/nitrite transporter; PfamMatches:PF07690.10 YP_006230139.1 COGmatches:COG1469 Uncharacterized conserved protein; PfamMatches:PF02649.8; TIGRfamMatches:TIGR00294 YP_006230140.1 COGmatches:COG1376 Uncharacterized protein conserved in bacteria; PfamMatches:PF03734.8 YP_006230143.1 COGmatches:COG0523 Putative GTPases (G3E family); PfamMatches:PF02492.13 YP_006230144.1 'COGmatches:COG0765 ABC-type amino acid transport system, permease component; PfamMatches:PF00528.16' YP_006230145.1 'COGmatches:COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; PfamMatches:PF00497.14' YP_006230146.1 COGmatches:COG1714 Predicted membrane protein/domain; PfamMatches:PF06271.6 YP_006230147.1 PfamMatches:PF10925.2 YP_006230148.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230149.1 PfamMatches:PF11345.2 YP_006230150.1 COGmatches:COG3910 Predicted ATPase YP_006230151.1 COGmatches:COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; PfamMatches:PF00232.12 YP_006230152.1 PfamMatches:PF11033.2 YP_006230154.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006230155.1 COGmatches:COG0794 Predicted sugar phosphate isomerase involved in capsule formation; PfamMatches:PF01380.16 YP_006230156.1 COGmatches:COG0269 3-hexulose-6-phosphate synthase and related proteins; PfamMatches:PF00215.18 YP_006230157.1 COGmatches:COG1733 Predicted transcriptional regulators; PfamMatches:PF01638.11 YP_006230160.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00668.14 YP_006230161.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00668.14 YP_006230162.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00501.22 YP_006230163.1 COGmatches:COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis; PfamMatches:PF00975.1 YP_006230164.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230166.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006230167.1 COGmatches:COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; PfamMatches:PF00155.15 YP_006230168.1 COGmatches:COG2091 Phosphopantetheinyl transferase; PfamMatches:PF01648.14 YP_006230169.1 COGmatches:COG2364 Predicted membrane protein; PfamMatches:PF02588.9 YP_006230170.1 'COGmatches:COG1126 ABC-type polar amino acid transport system, ATPase component; PfamMatches:PF00005.21' YP_006230171.1 'COGmatches:COG0765 ABC-type amino acid transport system, permease component; PfamMatches:PF00528.16' YP_006230172.1 'COGmatches:COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; PfamMatches:PF00497.14' YP_006230173.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006230174.1 COGmatches:COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; PfamMatches:PF01977.10; TIGRfamMatches:TIGR00148 YP_006230177.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006230178.1 COGmatches:COG3104 Dipeptide/tripeptide permease; PfamMatches:PF00854.15 YP_006230179.1 PfamMatches:PF12708.1 YP_006230181.1 PfamMatches:PF03323.7 YP_006230182.1 PfamMatches:PF05504.5 YP_006230183.1 PfamMatches:PF03845.7 YP_006230184.1 'COGmatches:COG1136 ABC-type antimicrobial peptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006230185.1 'COGmatches:COG0577 ABC-type antimicrobial peptide transport system, permease component; PfamMatches:PF02687.15' YP_006230186.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00486.22 YP_006230187.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006230188.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF00515.22 YP_006230189.1 PfamMatches:PF11131.2 YP_006230190.1 COGmatches:COG0527 Aspartokinases; PfamMatches:PF00696.22 YP_006230191.1 'COGmatches:COG4606 ABC-type enterochelin transport system, permease component; PfamMatches:PF01032.12' YP_006230192.1 'COGmatches:COG4605 ABC-type enterochelin transport system, permease component; PfamMatches:PF01032.12' YP_006230193.1 'COGmatches:COG4604 ABC-type enterochelin transport system, ATPase component; PfamMatches:PF00005.21' YP_006230194.1 'COGmatches:COG4607 ABC-type enterochelin transport system, periplasmic component; PfamMatches:PF01497.12' YP_006230195.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230196.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006230197.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006230198.1 COGmatches:COG1359 Uncharacterized conserved protein; PfamMatches:PF03992.10 YP_006230199.1 COGmatches:COG0640 Predicted transcriptional regulators; PfamMatches:PF01022.14 YP_006230200.1 COGmatches:COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; PfamMatches:PF00155.15 YP_006230201.1 COGmatches:COG0160 4-aminobutyrate aminotransferase and related aminotransferases; PfamMatches:PF00202.15 YP_006230202.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006230203.1 COGmatches:COG4975 Putative glucose uptake permease; PfamMatches:PF06800.6 YP_006230204.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006230205.1 COGmatches:COG4549 Uncharacterized protein conserved in bacteria; PfamMatches:PF07987.5 YP_006230206.1 COGmatches:COG1276 Putative copper export protein; PfamMatches:PF04234.6 YP_006230207.1 COGmatches:COG1349 Transcriptional regulators of sugar metabolism; PfamMatches:PF08220.6 YP_006230209.1 'COGmatches:COG2213 Phosphotransferase system, mannitol-specific IIBC component; PfamMatches:PF02378.12' YP_006230210.1 'COGmatches:COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; PfamMatches:PF00359.1' YP_006230211.1 COGmatches:COG0246 Mannitol-1-phosphate/altronate dehydrogenases; PfamMatches:PF08125.7 YP_006230212.1 COGmatches:COG0473 Isocitrate/isopropylmalate dehydrogenase; PfamMatches:PF00180.14 YP_006230213.1 COGmatches:COG0681 Signal peptidase I; PfamMatches:PF00717.17 YP_006230214.1 COGmatches:COG0412 Dienelactone hydrolase and related enzymes; PfamMatches:PF01738.1 YP_006230215.1 COGmatches:COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; PfamMatches:PF07977.7 YP_006230217.1 COGmatches:COG0561 Predicted hydrolases of the HAD superfamily; PfamMatches:PF08282.6 YP_006230218.1 'COGmatches:COG1540 Uncharacterized proteins, homologs of lactam utilization protein B; PfamMatches:PF03746.10' YP_006230219.1 COGmatches:COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; PfamMatches:PF01566.12 YP_006230220.1 COGmatches:COG4336 Uncharacterized conserved protein; PfamMatches:PF07286.6 YP_006230221.1 COGmatches:COG2049 Allophanate hydrolase subunit 1; PfamMatches:PF02682.10; TIGRfamMatches:TIGR00370 YP_006230222.1 COGmatches:COG1984 Allophanate hydrolase subunit 2; PfamMatches:PF02626.9 YP_006230223.1 COGmatches:COG1414 Transcriptional regulator; PfamMatches:PF01614.12 YP_006230224.1 COGmatches:COG2755 Lysophospholipase L1 and related esterases; PfamMatches:PF00657.1 YP_006230226.1 COGmatches:COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides; PfamMatches:PF03992.10 YP_006230228.1 COGmatches:COG0768 Cell division protein FtsI/penicillin-binding protein 2; PfamMatches:PF00905.16 YP_006230229.1 COGmatches:COG4989 Predicted oxidoreductase; PfamMatches:PF00248.15 YP_006230230.1 COGmatches:COG3711 Transcriptional antiterminator; PfamMatches:PF00874.14 YP_006230231.1 COGmatches:COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PfamMatches:PF00501.22 YP_006230232.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF08241.6 YP_006230233.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006230234.1 'COGmatches:COG3822 ABC-type sugar transport system, auxiliary component' YP_006230235.1 'COGmatches:COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; PfamMatches:PF00583.18' YP_006230236.1 COGmatches:COG3871 Uncharacterized stress protein (general stress protein 26); PfamMatches:PF01243.14 YP_006230237.1 PfamMatches:PF10997.2 YP_006230238.1 PfamMatches:PF12823.1 YP_006230239.1 COGmatches:COG1522 Transcriptional regulators; PfamMatches:PF01037.15 YP_006230240.1 COGmatches:COG0550 Topoisomerase IA; PfamMatches:PF01131.14 YP_006230242.1 COGmatches:COG2199 FOG: GGDEF domain; PfamMatches:PF00990.15 YP_006230243.1 COGmatches:COG5298 Uncharacterized protein conserved in bacteria; PfamMatches:PF10096.3 YP_006230244.1 'COGmatches:COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; PfamMatches:PF00535.20' YP_006230247.1 COGmatches:COG0531 Amino acid transporters YP_006230248.1 COGmatches:COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; PfamMatches:PF00293.1 YP_006230249.1 'COGmatches:COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; PfamMatches:PF02776.12' YP_006230252.1 COGmatches:COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; PfamMatches:PF01566.12 YP_006230253.1 COGmatches:COG2261 Predicted membrane protein; PfamMatches:PF04226.7 YP_006230254.1 COGmatches:COG4876 Uncharacterized protein conserved in bacteria; PfamMatches:PF09954.3 YP_006230255.1 PfamMatches:PF12787.1 YP_006230256.1 COGmatches:COG3729 General stress protein; PfamMatches:PF10685.3 YP_006230257.1 COGmatches:COG0662 Mannose-6-phosphate isomerase; PfamMatches:PF07883.5 YP_006230259.1 COGmatches:COG3546 Mn-containing catalase; PfamMatches:PF05067.6 YP_006230260.1 'COGmatches:COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; PfamMatches:PF03480.7' YP_006230261.1 COGmatches:COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; PfamMatches:PF02518.20 YP_006230262.1 COGmatches:COG4565 Response regulator of citrate/malate metabolism; PfamMatches:PF00072.18 YP_006230263.1 COGmatches:COG1301 Na+/H+-dicarboxylate symporters; PfamMatches:PF00375.12 YP_006230264.1 COGmatches:COG0628 Predicted permease; PfamMatches:PF01594.10 YP_006230265.1 COGmatches:COG1301 Na+/H+-dicarboxylate symporters; PfamMatches:PF00375.12 YP_006230266.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006230267.1 'COGmatches:COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; PfamMatches:PF12730.1' YP_006230269.1 COGmatches:COG1960 Acyl-CoA dehydrogenases; PfamMatches:PF08028.5 YP_006230272.1 COGmatches:COG0053 Predicted Co/Zn/Cd cation transporters; PfamMatches:PF01545.15 YP_006230273.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00085.14 YP_006230274.1 COGmatches:COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; PfamMatches:PF07478.7 YP_006230275.1 COGmatches:COG0770 UDP-N-acetylmuramyl pentapeptide synthase; PfamMatches:PF08245.6 YP_006230276.1 COGmatches:COG0513 Superfamily II DNA and RNA helicases; PfamMatches:PF00270.23 YP_006230277.1 COGmatches:COG3402 Uncharacterized conserved protein; PfamMatches:PF03703.8 YP_006230278.1 COGmatches:COG3428 Predicted membrane protein; PfamMatches:PF03703.8 YP_006230279.1 COGmatches:COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); PfamMatches:PF01694.16 YP_006230280.1 COGmatches:COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); PfamMatches:PF01648.14 YP_006230281.1 COGmatches:COG2834 Outer membrane lipoprotein-sorting protein YP_006230282.1 COGmatches:COG0787 Alanine racemase; PfamMatches:PF01168.14 YP_006230283.1 COGmatches:COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; PfamMatches:PF01402.15 YP_006230284.1 COGmatches:COG2337 Growth inhibitor; PfamMatches:PF02452.11 YP_006230285.1 PfamMatches:PF08678.4 YP_006230286.1 COGmatches:COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PfamMatches:PF01740.15 YP_006230287.1 COGmatches:COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); PfamMatches:PF02518.20 YP_006230288.1 'COGmatches:COG2208 Serine phosphatase RsbU, regulator of sigma subunit; PfamMatches:PF07228.6' YP_006230289.1 COGmatches:COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PfamMatches:PF01740.15 YP_006230290.1 COGmatches:COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); PfamMatches:PF02518.20 YP_006230291.1 COGmatches:COG1191 DNA-directed RNA polymerase specialized sigma subunit; PfamMatches:PF04545.10 YP_006230292.1 PfamMatches:PF07228.6 YP_006230294.1 PfamMatches:PF01878.12 YP_006230295.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230296.1 COGmatches:COG2183 Transcriptional accessory protein; PfamMatches:PF09371.4 YP_006230298.1 COGmatches:COG3091 Uncharacterized protein conserved in bacteria; PfamMatches:PF10263.3 YP_006230299.1 COGmatches:COG0582 Integrase; PfamMatches:PF00589.16 YP_006230300.1 COGmatches:COG2856 Predicted Zn peptidase; PfamMatches:PF06114.7 YP_006230301.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF01381.16 YP_006230305.1 PfamMatches:PF06125.5 YP_006230306.1 COGmatches:COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; PfamMatches:PF01580.12 YP_006230307.1 COGmatches:COG2946 Putative phage replication protein RstA; PfamMatches:PF02486.13 YP_006230312.1 COGmatches:COG1051 ADP-ribose pyrophosphatase; PfamMatches:PF00293.1 YP_006230316.1 PfamMatches:PF12642.1 YP_006230318.1 PfamMatches:PF12648.1 YP_006230319.1 PfamMatches:PF12846.1 YP_006230320.1 PfamMatches:PF08960.4 YP_006230322.1 COGmatches:COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); PfamMatches:PF00877.13 YP_006230328.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF00515.22 YP_006230329.1 PfamMatches:PF08867.5 YP_006230330.1 'COGmatches:COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins' YP_006230332.1 PfamMatches:PF09346.4 YP_006230333.1 COGmatches:COG5444 Uncharacterized conserved protein; PfamMatches:PF04740.6 YP_006230336.1 COGmatches:COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); PfamMatches:PF02525.11 YP_006230341.1 COGmatches:COG0693 Putative intracellular protease/amidase; PfamMatches:PF01965.1 YP_006230342.1 COGmatches:COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PfamMatches:PF00701.16 YP_006230343.1 COGmatches:COG2807 Cyanate permease; PfamMatches:PF07690.10 YP_006230344.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006230345.1 COGmatches:COG2258 Uncharacterized protein conserved in bacteria; PfamMatches:PF03473.11 YP_006230346.1 COGmatches:COG1280 Putative threonine efflux protein; PfamMatches:PF01810.12 YP_006230348.1 PfamMatches:PF01345.12 YP_006230349.1 COGmatches:COG3764 Sortase (surface protein transpeptidase); PfamMatches:PF04203.7 YP_006230350.1 COGmatches:COG1278 Cold shock proteins; PfamMatches:PF00313.16 YP_006230351.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006230353.1 COGmatches:COG2207 AraC-type DNA-binding domain-containing proteins; PfamMatches:PF12833.1 YP_006230354.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006230355.1 COGmatches:COG3708 Uncharacterized protein conserved in bacteria; PfamMatches:PF06445.9 YP_006230356.1 COGmatches:COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; PfamMatches:PF00155.15 YP_006230357.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230359.1 COGmatches:COG4430 Uncharacterized protein conserved in bacteria; PfamMatches:PF08818.5 YP_006230361.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006230362.1 COGmatches:COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; PfamMatches:PF00392.15 YP_006230363.1 COGmatches:COG2030 Acyl dehydratase; PfamMatches:PF01575.13 YP_006230364.1 COGmatches:COG3545 Predicted esterase of the alpha/beta hydrolase fold; PfamMatches:PF06821.7 YP_006230365.1 COGmatches:COG1733 Predicted transcriptional regulators; PfamMatches:PF01638.11 YP_006230366.1 COGmatches:COG1284 Uncharacterized conserved protein; PfamMatches:PF02588.9 YP_006230367.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230368.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006230371.1 COGmatches:COG0640 Predicted transcriptional regulators; PfamMatches:PF01022.14 YP_006230372.1 COGmatches:COG1055 Na+/H+ antiporter NhaD and related arsenite permeases; PfamMatches:PF02040.9 YP_006230373.1 COGmatches:COG0394 Protein-tyrosine-phosphatase YP_006230374.1 PfamMatches:PF12746.1 YP_006230375.1 COGmatches:COG1316 Transcriptional regulator; PfamMatches:PF03816.8 YP_006230376.1 COGmatches:COG0726 Predicted xylanase/chitin deacetylase; PfamMatches:PF01522.15 YP_006230378.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006230379.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00486.22 YP_006230380.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006230381.1 COGmatches:COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; PfamMatches:PF00155.15 YP_006230382.1 'COGmatches:COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; PfamMatches:PF01613.12' YP_006230383.1 COGmatches:COG0640 Predicted transcriptional regulators; PfamMatches:PF12840.1 YP_006230384.1 COGmatches:COG2128 Uncharacterized conserved protein; PfamMatches:PF02627.1 YP_006230388.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF07730.7 YP_006230389.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006230390.1 COGmatches:COG2409 Predicted drug exporters of the RND superfamily; PfamMatches:PF03176.9 YP_006230393.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006230394.1 COGmatches:COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; PfamMatches:PF00155.15 YP_006230395.1 COGmatches:COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); PfamMatches:PF03591.8 YP_006230396.1 COGmatches:COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance); PfamMatches:PF05437.6 YP_006230397.1 COGmatches:COG1114 Branched-chain amino acid permeases; PfamMatches:PF05525.7 YP_006230400.1 'COGmatches:COG1811 Uncharacterized membrane protein, possible Na+ channel or pump; PfamMatches:PF04474.6' YP_006230401.1 'COGmatches:COG4978 Transcriptional regulator, effector-binding domain/component; PfamMatches:PF00376.17' YP_006230402.1 COGmatches:COG0053 Predicted Co/Zn/Cd cation transporters; PfamMatches:PF01545.15 YP_006230403.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006230404.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF00903.19 YP_006230405.1 COGmatches:COG2259 Predicted membrane protein; PfamMatches:PF07681.6 YP_006230406.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00085.14 YP_006230407.1 PfamMatches:PF10676.3 YP_006230409.1 PfamMatches:PF10676.3 YP_006230410.1 COGmatches:COG2323 Predicted membrane protein; PfamMatches:PF04239.6 YP_006230411.1 COGmatches:COG2323 Predicted membrane protein; PfamMatches:PF04239.6 YP_006230412.1 COGmatches:COG0071 Molecular chaperone (small heat shock protein); PfamMatches:PF00011.15 YP_006230413.1 PfamMatches:PF10676.3 YP_006230414.1 PfamMatches:PF10676.3 YP_006230415.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006230416.1 PfamMatches:PF07681.6 YP_006230417.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006230418.1 COGmatches:COG0488 ATPase components of ABC transporters with duplicated ATPase domains; PfamMatches:PF00005.21 YP_006230419.1 COGmatches:COG1113 Gamma-aminobutyrate permease and related permeases; PfamMatches:PF00324.15 YP_006230420.1 COGmatches:COG2318 Uncharacterized protein conserved in bacteria; PfamMatches:PF05163.6 YP_006230421.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230422.1 COGmatches:COG2409 Predicted drug exporters of the RND superfamily; PfamMatches:PF03176.9 YP_006230423.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006230424.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230425.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230426.1 COGmatches:COG0730 Predicted permeases; PfamMatches:PF01925.13 YP_006230427.1 COGmatches:COG1802 Transcriptional regulators; PfamMatches:PF07729.6 YP_006230428.1 COGmatches:COG3858 Predicted glycosyl hydrolase; PfamMatches:PF00704.22 YP_006230429.1 'COGmatches:COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase; PfamMatches:PF00201.12' YP_006230430.1 PfamMatches:PF11611.2 YP_006230431.1 COGmatches:COG1785 Alkaline phosphatase; PfamMatches:PF00245.14 YP_006230432.1 COGmatches:COG5646 Uncharacterized conserved protein; PfamMatches:PF08818.5 YP_006230434.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006230435.1 COGmatches:COG1078 HD superfamily phosphohydrolases; PfamMatches:PF01966.16 YP_006230437.1 PfamMatches:PF07563.5 YP_006230438.1 COGmatches:COG2814 Arabinose efflux permease; PfamMatches:PF07690.10 YP_006230439.1 COGmatches:COG1440 Phosphotransferase system cellobiose-specific component IIB; PfamMatches:PF02302.11 YP_006230440.1 COGmatches:COG1447 Phosphotransferase system cellobiose-specific component IIA; PfamMatches:PF02255.10 YP_006230441.1 COGmatches:COG1455 Phosphotransferase system cellobiose-specific component IIC; PfamMatches:PF02378.12 YP_006230442.1 COGmatches:COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; PfamMatches:PF00232.12 YP_006230443.1 COGmatches:COG2188 Transcriptional regulators; PfamMatches:PF07702.7 YP_006230444.1 COGmatches:COG1940 Transcriptional regulator/sugar kinase; PfamMatches:PF00480.14 YP_006230445.1 COGmatches:COG1482 Phosphomannose isomerase; PfamMatches:PF01238.15 YP_006230446.1 COGmatches:COG4124 Beta-mannanase; PfamMatches:PF02156.9 YP_006230448.1 COGmatches:COG0611 Thiamine monophosphate kinase; PfamMatches:PF00586.18 YP_006230449.1 COGmatches:COG0802 Predicted ATPase or kinase; PfamMatches:PF02367.11 YP_006230450.1 'COGmatches:COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; PfamMatches:PF00814.19' YP_006230451.1 COGmatches:COG0456 Acetyltransferases; PfamMatches:PF00583.18 YP_006230452.1 COGmatches:COG0533 Metal-dependent proteases with possible chaperone activity; PfamMatches:PF00814.19 YP_006230454.1 COGmatches:COG0488 ATPase components of ABC transporters with duplicated ATPase domains; PfamMatches:PF00005.21 YP_006230455.1 COGmatches:COG0315 Molybdenum cofactor biosynthesis enzyme; PfamMatches:PF01967.15 YP_006230456.1 COGmatches:COG2344 AT-rich DNA-binding protein; PfamMatches:PF02629.13 YP_006230457.1 COGmatches:COG1826 Sec-independent protein secretion pathway components; PfamMatches:PF02416.10 YP_006230458.1 COGmatches:COG0805 Sec-independent protein secretion pathway component TatC; PfamMatches:PF00902.12 YP_006230460.1 COGmatches:COG1266 Predicted metal-dependent membrane protease; PfamMatches:PF02517.10 YP_006230461.1 COGmatches:COG0234 Co-chaperonin GroES (HSP10); PfamMatches:PF00166.15 YP_006230462.1 COGmatches:COG0459 Chaperonin GroEL (HSP60 family); PfamMatches:PF00118.18 YP_006230465.1 COGmatches:COG2207 AraC-type DNA-binding domain-containing proteins; PfamMatches:PF12833.1 YP_006230466.1 PfamMatches:PF00550.19 YP_006230467.1 COGmatches:COG0720 6-pyruvoyl-tetrahydropterin synthase; PfamMatches:PF01242.1 YP_006230468.1 COGmatches:COG0602 Organic radical activating enzymes; PfamMatches:PF04055.15 YP_006230469.1 'COGmatches:COG2192 Predicted carbamoyl transferase, NodU family; PfamMatches:PF02543.9' YP_006230470.1 COGmatches:COG0302 GTP cyclohydrolase I; PfamMatches:PF01227.16 YP_006230471.1 COGmatches:COG0236 Acyl carrier protein; PfamMatches:PF00550.19 YP_006230472.1 'COGmatches:COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog; PfamMatches:PF02423.9' YP_006230473.1 COGmatches:COG0031 Cysteine synthase; PfamMatches:PF00291.19 YP_006230474.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00501.22 YP_006230475.1 COGmatches:COG0603 Predicted PP-loop superfamily ATPase; PfamMatches:PF06508.7 YP_006230476.1 COGmatches:COG1171 Threonine dehydratase; PfamMatches:PF00291.19 YP_006230477.1 PfamMatches:PF00535.20 YP_006230478.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00005.21' YP_006230479.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF00931.16 YP_006230480.1 COGmatches:COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; PfamMatches:PF00107.20 YP_006230481.1 COGmatches:COG2211 Na+/melibiose symporter and related transporters; PfamMatches:PF07690.10 YP_006230482.1 'COGmatches:COG0524 Sugar kinases, ribokinase family; PfamMatches:PF00294.18' YP_006230483.1 'COGmatches:COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; PfamMatches:PF04012.6' YP_006230484.1 PfamMatches:PF08271.6 YP_006230485.1 COGmatches:COG1512 Beta-propeller domains of methanol dehydrogenase type; PfamMatches:PF04536.8 YP_006230486.1 COGmatches:COG4260 Putative virion core protein (lumpy skin disease virus); PfamMatches:PF01145.19 YP_006230487.1 PfamMatches:PF07885.10 YP_006230489.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF00083.18 YP_006230490.1 COGmatches:COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; PfamMatches:PF08240.6 YP_006230491.1 PfamMatches:PF03330.12 YP_006230495.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006230497.1 COGmatches:COG2132 Putative multicopper oxidases; PfamMatches:PF07731.8 YP_006230498.1 COGmatches:COG1113 Gamma-aminobutyrate permease and related permeases; PfamMatches:PF00324.15 YP_006230499.1 COGmatches:COG0053 Predicted Co/Zn/Cd cation transporters; PfamMatches:PF01545.15 YP_006230500.1 COGmatches:COG0714 MoxR-like ATPases; PfamMatches:PF07726.5 YP_006230501.1 COGmatches:COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain); PfamMatches:PF01882.12 YP_006230502.1 'COGmatches:COG1305 Transglutaminase-like enzymes, putative cysteine proteases; PfamMatches:PF01841.1' YP_006230504.1 'COGmatches:COG0519 GMP synthase, PP-ATPase domain/subunit; PfamMatches:PF00117.22' YP_006230505.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF08281.6' YP_006230507.1 COGmatches:COG2252 Permeases; PfamMatches:PF00860.14 YP_006230510.1 COGmatches:COG4843 Uncharacterized protein conserved in bacteria; PfamMatches:PF10035.3 YP_006230512.1 COGmatches:COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; PfamMatches:PF00731.14 YP_006230513.1 COGmatches:COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); PfamMatches:PF02222.16 YP_006230514.1 COGmatches:COG0015 Adenylosuccinate lyase; PfamMatches:PF00206.1 YP_006230515.1 COGmatches:COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; PfamMatches:PF01259.12 YP_006230516.1 'COGmatches:COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component; PfamMatches:PF02700.8; TIGRfamMatches:TIGR00302' YP_006230517.1 'COGmatches:COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain; PfamMatches:PF00117.22' YP_006230518.1 'COGmatches:COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain; PfamMatches:PF00586.18' YP_006230519.1 COGmatches:COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; PfamMatches:PF00310.1 YP_006230520.1 COGmatches:COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; PfamMatches:PF02769.16 YP_006230521.1 COGmatches:COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; PfamMatches:PF00551.13 YP_006230522.1 COGmatches:COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); PfamMatches:PF01808.12 YP_006230523.1 COGmatches:COG0151 Phosphoribosylamine-glycine ligase; PfamMatches:PF01071.13 YP_006230524.1 COGmatches:COG1522 Transcriptional regulators; PfamMatches:PF01037.15 YP_006230525.1 COGmatches:COG0531 Amino acid transporters; PfamMatches:PF00324.15 YP_006230526.1 COGmatches:COG1001 Adenine deaminase; PfamMatches:PF01979.14 YP_006230527.1 PfamMatches:PF11258.2 YP_006230528.1 COGmatches:COG4496 Uncharacterized protein conserved in bacteria; PfamMatches:PF01371.13 YP_006230529.1 COGmatches:COG0069 Glutamate synthase domain 2; PfamMatches:PF01645.11 YP_006230531.1 'COGmatches:COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold; PfamMatches:PF01884.11' YP_006230532.1 COGmatches:COG0210 Superfamily I DNA and RNA helicases; PfamMatches:PF00580.15 YP_006230533.1 COGmatches:COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); PfamMatches:PF01653.1 YP_006230534.1 COGmatches:COG4851 Protein involved in sex pheromone biosynthesis; PfamMatches:PF07537.5 YP_006230535.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230536.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00501.22 YP_006230537.1 COGmatches:COG1680 Beta-lactamase class C and other penicillin binding proteins; PfamMatches:PF00144.18 YP_006230539.1 COGmatches:COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis; PfamMatches:PF00975.1 YP_006230540.1 COGmatches:COG1250 3-hydroxyacyl-CoA dehydrogenase; PfamMatches:PF02737.12 YP_006230541.1 COGmatches:COG3882 Predicted enzyme involved in methoxymalonyl-ACP biosynthesis; PfamMatches:PF12689.1 YP_006230542.1 PfamMatches:PF00550.19 YP_006230543.1 COGmatches:COG1960 Acyl-CoA dehydrogenases; PfamMatches:PF00441.1 YP_006230544.1 COGmatches:COG3321 Polyketide synthase modules and related proteins; PfamMatches:PF00668.14 YP_006230545.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00501.22 YP_006230546.1 COGmatches:COG3321 Polyketide synthase modules and related proteins; PfamMatches:PF00109.20 YP_006230547.1 COGmatches:COG3321 Polyketide synthase modules and related proteins; PfamMatches:PF00109.20 YP_006230548.1 COGmatches:COG3321 Polyketide synthase modules and related proteins; PfamMatches:PF00668.14 YP_006230549.1 COGmatches:COG2334 Putative homoserine kinase type II (protein kinase fold); PfamMatches:PF01636.17 YP_006230550.1 COGmatches:COG1785 Alkaline phosphatase; PfamMatches:PF00245.14 YP_006230551.1 COGmatches:COG1285 Uncharacterized membrane protein; PfamMatches:PF02308.10 YP_006230552.1 COGmatches:COG0591 Na+/proline symporter; PfamMatches:PF00474.11 YP_006230553.1 COGmatches:COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; PfamMatches:PF02686.9 YP_006230554.1 COGmatches:COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; PfamMatches:PF01425.15 YP_006230555.1 COGmatches:COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); PfamMatches:PF02934.9 YP_006230556.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006230557.1 COGmatches:COG0841 Cation/multidrug efflux pump; PfamMatches:PF00873.13 YP_006230558.1 COGmatches:COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; PfamMatches:PF00781.18; TIGRfamMatches:TIGR00147 YP_006230559.1 COGmatches:COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; PfamMatches:PF05958.5 YP_006230560.1 PfamMatches:PF12102.2 YP_006230563.1 COGmatches:COG5444 Uncharacterized conserved protein; PfamMatches:PF04740.6 YP_006230566.1 PfamMatches:PF07007.6 YP_006230567.1 COGmatches:COG2323 Predicted membrane protein; PfamMatches:PF04239.6 YP_006230569.1 COGmatches:COG0457 FOG: TPR repeat YP_006230570.1 COGmatches:COG0457 FOG: TPR repeat YP_006230571.1 COGmatches:COG0217 Uncharacterized conserved protein; PfamMatches:PF01709.14; TIGRfamMatches:TIGR01033 YP_006230573.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006230574.1 COGmatches:COG3631 Ketosteroid isomerase-related protein; PfamMatches:PF12680.1 YP_006230575.1 COGmatches:COG0702 Predicted nucleoside-diphosphate-sugar epimerases; PfamMatches:PF05368.7 YP_006230576.1 PfamMatches:PF11007.2 YP_006230577.1 PfamMatches:PF12652.1 YP_006230578.1 COGmatches:COG3546 Mn-containing catalase; PfamMatches:PF05067.6 YP_006230579.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006230581.1 COGmatches:COG5578 Predicted integral membrane protein; PfamMatches:PF04854.8 YP_006230582.1 COGmatches:COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; PfamMatches:PF06580.7 YP_006230583.1 COGmatches:COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PfamMatches:PF00072.18 YP_006230584.1 'COGmatches:COG1653 ABC-type sugar transport system, periplasmic component; PfamMatches:PF01547.19' YP_006230585.1 'COGmatches:COG1175 ABC-type sugar transport systems, permease components; PfamMatches:PF00528.16' YP_006230586.1 'COGmatches:COG0395 ABC-type sugar transport system, permease component; PfamMatches:PF00528.16' YP_006230587.1 'COGmatches:COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins; PfamMatches:PF07470.1' YP_006230588.1 COGmatches:COG2207 AraC-type DNA-binding domain-containing proteins; PfamMatches:PF12833.1 YP_006230589.1 COGmatches:COG2755 Lysophospholipase L1 and related esterases; PfamMatches:PF00657.1 YP_006230590.1 PfamMatches:PF09224.5 YP_006230591.1 COGmatches:COG5578 Predicted integral membrane protein; PfamMatches:PF04854.8 YP_006230593.1 PfamMatches:PF01839.17 YP_006230594.1 COGmatches:COG2755 Lysophospholipase L1 and related esterases; PfamMatches:PF00657.1 YP_006230595.1 COGmatches:COG1874 Beta-galactosidase; PfamMatches:PF02449.9 YP_006230597.1 'COGmatches:COG1653 ABC-type sugar transport system, periplasmic component; PfamMatches:PF01547.19' YP_006230598.1 'COGmatches:COG4209 ABC-type polysaccharide transport system, permease component; PfamMatches:PF00528.16' YP_006230599.1 'COGmatches:COG0395 ABC-type sugar transport system, permease component; PfamMatches:PF00528.16' YP_006230600.1 'COGmatches:COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; PfamMatches:PF11975.1' YP_006230601.1 COGmatches:COG2323 Predicted membrane protein; PfamMatches:PF04239.6 YP_006230602.1 COGmatches:COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides; PfamMatches:PF03992.10 YP_006230603.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF12681.1 YP_006230606.1 PfamMatches:PF01740.15 YP_006230607.1 COGmatches:COG5583 Uncharacterized small protein; PfamMatches:PF10055.3 YP_006230608.1 'COGmatches:COG0670 Integral membrane protein, interacts with FtsH; PfamMatches:PF01027.14' YP_006230609.1 COGmatches:COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases YP_006230611.1 'COGmatches:COG0369 Sulfite reductase, alpha subunit (flavoprotein); NOTE=COGmatches:COG2124 Cytochrome P450; PfamMatches:PF00067.16' YP_006230613.1 'COGmatches:COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; PfamMatches:PF00884.17' YP_006230615.1 'COGmatches:COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); PfamMatches:PF00483.17' YP_006230616.1 COGmatches:COG0451 Nucleoside-diphosphate-sugar epimerases; PfamMatches:PF01370.15 YP_006230617.1 PfamMatches:PF03407.10 YP_006230618.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006230619.1 PfamMatches:PF03407.10 YP_006230620.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230622.1 COGmatches:COG1011 Predicted hydrolase (HAD superfamily); PfamMatches:PF00702.1 YP_006230623.1 COGmatches:COG0531 Amino acid transporters; PfamMatches:PF00324.15 YP_006230624.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006230625.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006230626.1 COGmatches:COG0488 ATPase components of ABC transporters with duplicated ATPase domains; PfamMatches:PF00005.21 YP_006230627.1 PfamMatches:PF10787.3 YP_006230628.1 COGmatches:COG0789 Predicted transcriptional regulators; PfamMatches:PF00376.17 YP_006230629.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230631.1 COGmatches:COG0488 ATPase components of ABC transporters with duplicated ATPase domains; PfamMatches:PF00005.21 YP_006230632.1 COGmatches:COG0513 Superfamily II DNA and RNA helicases; PfamMatches:PF00270.23 YP_006230633.1 COGmatches:COG1247 Sortase and related acyltransferases; PfamMatches:PF00583.18 YP_006230634.1 COGmatches:COG2130 Putative NADP-dependent oxidoreductases; PfamMatches:PF00107.20 YP_006230635.1 'COGmatches:COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PfamMatches:PF00005.21' YP_006230636.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006230637.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006230638.1 'COGmatches:COG4594 ABC-type Fe3+-citrate transport system, periplasmic component; PfamMatches:PF01497.12' YP_006230639.1 PfamMatches:PF11486.2 YP_006230640.1 PfamMatches:PF11181.2 YP_006230641.1 COGmatches:COG3866 Pectate lyase; PfamMatches:PF00544.13 YP_006230642.1 COGmatches:COG0471 Di- and tricarboxylate transporters; PfamMatches:PF00939.13 YP_006230643.1 COGmatches:COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; PfamMatches:PF02518.20 YP_006230644.1 COGmatches:COG4565 Response regulator of citrate/malate metabolism; PfamMatches:PF00072.18 YP_006230645.1 COGmatches:COG3181 Uncharacterized protein conserved in bacteria; PfamMatches:PF03401.8 YP_006230646.1 COGmatches:COG2851 H+/citrate symporter; PfamMatches:PF03600.10 YP_006230647.1 'COGmatches:COG0491 Zn-dependent hydrolases, including glyoxylases; PfamMatches:PF00753.21' YP_006230649.1 'COGmatches:COG4362 Nitric oxide synthase, oxygenase domain; PfamMatches:PF02898.9' YP_006230650.1 COGmatches:COG1254 Acylphosphatases; PfamMatches:PF00708.12 YP_006230651.1 COGmatches:COG2258 Uncharacterized protein conserved in bacteria; PfamMatches:PF03473.11 YP_006230652.1 PfamMatches:PF11121.2 YP_006230654.1 PfamMatches:PF11588.2 YP_006230655.1 COGmatches:COG0024 Methionine aminopeptidase; PfamMatches:PF00557.1 YP_006230656.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF02378.12' YP_006230657.1 'COGmatches:COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; PfamMatches:PF00884.17' YP_006230658.1 PfamMatches:PF09350.4 YP_006230660.1 COGmatches:COG1115 Na+/alanine symporter; PfamMatches:PF01235.11 YP_006230662.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF02378.12' YP_006230663.1 COGmatches:COG0366 Glycosidases; PfamMatches:PF00128.18 YP_006230664.1 COGmatches:COG2188 Transcriptional regulators; PfamMatches:PF07702.7 YP_006230665.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006230666.1 PfamMatches:PF02872.12 YP_006230667.1 COGmatches:COG0693 Putative intracellular protease/amidase; PfamMatches:PF01965.1 YP_006230668.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230670.1 COGmatches:COG4840 Uncharacterized protein conserved in bacteria; PfamMatches:PF06569.5 YP_006230672.1 COGmatches:COG0394 Protein-tyrosine-phosphatase; PfamMatches:PF01451.15 YP_006230674.1 COGmatches:COG1295 Predicted membrane protein; PfamMatches:PF03631.9 YP_006230675.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230677.1 COGmatches:COG0387 Ca2+/H+ antiporter; PfamMatches:PF01699.18 YP_006230679.1 COGmatches:COG0668 Small-conductance mechanosensitive channel; PfamMatches:PF00924.12 YP_006230680.1 COGmatches:COG0535 Predicted Fe-S oxidoreductases; PfamMatches:PF08756.4 YP_006230682.1 COGmatches:COG0726 Predicted xylanase/chitin deacetylase; PfamMatches:PF01522.15 YP_006230683.1 COGmatches:COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; PfamMatches:PF03446.9 YP_006230684.1 COGmatches:COG0598 Mg2+ and Co2+ transporters; PfamMatches:PF01544.12 YP_006230685.1 COGmatches:COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; PfamMatches:PF00730.1 YP_006230689.1 COGmatches:COG0042 tRNA-dihydrouridine synthase; PfamMatches:PF01207.11 YP_006230692.1 'COGmatches:COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; PfamMatches:PF00676.14' YP_006230693.1 'COGmatches:COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit; PfamMatches:PF02779.18' YP_006230694.1 'COGmatches:COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; PfamMatches:PF00198.17' YP_006230695.1 'COGmatches:COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; PfamMatches:PF07992.8' YP_006230696.1 COGmatches:COG3284 Transcriptional activator of acetoin/glycerol metabolism; PfamMatches:PF00158.20 YP_006230697.1 PfamMatches:PF08141.6 YP_006230698.1 COGmatches:COG1742 Uncharacterized conserved protein; PfamMatches:PF02694.9 YP_006230702.1 PfamMatches:PF06013.6 YP_006230703.1 'COGmatches:COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; PfamMatches:PF11975.1' YP_006230704.1 COGmatches:COG1737 Transcriptional regulators; PfamMatches:PF01418.11 YP_006230705.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF02378.12' YP_006230706.1 PfamMatches:PF11962.2 YP_006230707.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006230708.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006230709.1 COGmatches:COG2259 Predicted membrane protein; PfamMatches:PF07681.6 YP_006230710.1 COGmatches:COG2514 Predicted ring-cleavage extradiol dioxygenase; PfamMatches:PF00903.19 YP_006230711.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF07730.7 YP_006230712.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006230713.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006230714.1 'COGmatches:COG0842 ABC-type multidrug transport system, permease component; PfamMatches:PF12698.1' YP_006230715.1 'COGmatches:COG0842 ABC-type multidrug transport system, permease component; PfamMatches:PF12698.1' YP_006230716.1 COGmatches:COG1695 Predicted transcriptional regulators; PfamMatches:PF03551.8 YP_006230719.1 COGmatches:COG3936 Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation; PfamMatches:PF01757.16 YP_006230720.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006230721.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230723.1 PfamMatches:PF12867.1 YP_006230724.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230725.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230726.1 COGmatches:COG2898 Uncharacterized conserved protein; PfamMatches:PF09924.3 YP_006230727.1 'COGmatches:COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PfamMatches:PF01497.12' YP_006230728.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006230729.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006230730.1 'COGmatches:COG0384 Predicted epimerase, PhzC/PhzF homolog; PfamMatches:PF02567.10' YP_006230731.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006230734.1 COGmatches:COG1090 Predicted nucleoside-diphosphate sugar epimerase; PfamMatches:PF01370.15 YP_006230735.1 COGmatches:COG2137 Uncharacterized protein conserved in bacteria; PfamMatches:PF02631.10 YP_006230736.1 PfamMatches:PF08838.4 YP_006230737.1 COGmatches:COG2814 Arabinose efflux permease; PfamMatches:PF07690.10 YP_006230738.1 PfamMatches:PF08176.6 YP_006230741.1 PfamMatches:PF08239.5 YP_006230742.1 COGmatches:COG5658 Predicted integral membrane protein YP_006230743.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006230744.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006230745.1 COGmatches:COG4485 Predicted membrane protein; PfamMatches:PF09586.4 YP_006230746.1 COGmatches:COG1988 Predicted membrane-bound metal-dependent hydrolases; PfamMatches:PF04307.8 YP_006230747.1 COGmatches:COG1194 A/G-specific DNA glycosylase; PfamMatches:PF00730.1 YP_006230749.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006230750.1 PfamMatches:PF04259.8 YP_006230752.1 COGmatches:COG3557 Uncharacterized domain/protein associated with RNAses G and E; PfamMatches:PF04167.7 YP_006230753.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006230754.1 COGmatches:COG4129 Predicted membrane protein; PfamMatches:PF06081.5 YP_006230755.1 COGmatches:COG0001 Glutamate-1-semialdehyde aminotransferase; PfamMatches:PF00202.15 YP_006230756.1 COGmatches:COG1225 Peroxiredoxin; PfamMatches:PF00578.15 YP_006230757.1 COGmatches:COG0735 Fe2+/Zn2+ uptake regulation proteins; PfamMatches:PF01475.13 YP_006230758.1 PfamMatches:PF11023.2 YP_006230760.1 COGmatches:COG4326 Sporulation control protein; PfamMatches:PF07070.5 YP_006230762.1 PfamMatches:PF07875.6 YP_006230763.1 COGmatches:COG3340 Peptidase E; PfamMatches:PF03575.1 YP_006230765.1 COGmatches:COG0422 Thiamine biosynthesis protein ThiC; PfamMatches:PF01964.12 YP_006230766.1 COGmatches:COG0277 FAD/FMN-containing dehydrogenases; PfamMatches:PF01565.17 YP_006230768.1 COGmatches:COG0753 Catalase; PfamMatches:PF00199.13 YP_006230769.1 'COGmatches:COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PfamMatches:PF00005.21' YP_006230770.1 'COGmatches:COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; PfamMatches:PF09084.5' YP_006230771.1 'COGmatches:COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PfamMatches:PF00528.16' YP_006230772.1 'COGmatches:COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; PfamMatches:PF00296.14' YP_006230775.1 COGmatches:COG0199 Ribosomal protein S14; PfamMatches:PF00253.15 YP_006230777.1 COGmatches:COG1476 Predicted transcriptional regulators; PfamMatches:PF01381.16 YP_006230779.1 COGmatches:COG1600 Uncharacterized Fe-S protein; PfamMatches:PF08331.4; TIGRfamMatches:TIGR00276 YP_006230780.1 PfamMatches:PF12671.1 YP_006230781.1 COGmatches:COG0219 Predicted rRNA methylase (SpoU class); PfamMatches:PF00588.13 YP_006230783.1 COGmatches:COG1664 Integral membrane protein CcmA involved in cell shape determination; PfamMatches:PF04519.7 YP_006230785.1 COGmatches:COG2766 Putative Ser protein kinase; PfamMatches:PF08298.5 YP_006230786.1 COGmatches:COG2718 Uncharacterized conserved protein; PfamMatches:PF04285.6 YP_006230787.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230788.1 COGmatches:COG1566 Multidrug resistance efflux pump; PfamMatches:PF12700.1 YP_006230789.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230790.1 COGmatches:COG0655 Multimeric flavodoxin WrbA; PfamMatches:PF03358.9 YP_006230793.1 COGmatches:COG1725 Predicted transcriptional regulators; PfamMatches:PF00392.15 YP_006230794.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006230795.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006230796.1 'COGmatches:COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; PfamMatches:PF12730.1' YP_006230797.1 COGmatches:COG1278 Cold shock proteins; PfamMatches:PF00313.16 YP_006230799.1 'COGmatches:COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; PfamMatches:PF03180.8' YP_006230800.1 COGmatches:COG2199 FOG: GGDEF domain; PfamMatches:PF00990.15 YP_006230801.1 COGmatches:COG1823 Predicted Na+/dicarboxylate symporter; PfamMatches:PF00375.12 YP_006230802.1 COGmatches:COG5444 Uncharacterized conserved protein YP_006230803.1 PfamMatches:PF11193.2 YP_006230804.1 COGmatches:COG1695 Predicted transcriptional regulators; PfamMatches:PF03551.8 YP_006230806.1 PfamMatches:PF09580.4 YP_006230808.1 COGmatches:COG5577 Spore coat protein; PfamMatches:PF07875.6 YP_006230809.1 'COGmatches:COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; NOTE=COGmatches:COG4085 Predicted RNA-binding protein, contains TRAM domain; PfamMatches:PF02872.12' YP_006230810.1 COGmatches:COG3764 Sortase (surface protein transpeptidase); PfamMatches:PF04203.7 YP_006230811.1 'COGmatches:COG0564 Pseudouridylate synthases, 23S RNA-specific; PfamMatches:PF00849.16' YP_006230813.1 COGmatches:COG0517 FOG: CBS domain; PfamMatches:PF00571.22 YP_006230814.1 COGmatches:COG0637 Predicted phosphatase/phosphohexomutase; PfamMatches:PF00702.1 YP_006230815.1 COGmatches:COG0388 Predicted amidohydrolase; PfamMatches:PF00795.1 YP_006230817.1 COGmatches:COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PfamMatches:PF00202.15 YP_006230818.1 COGmatches:COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding); PfamMatches:PF04309.6 YP_006230819.1 COGmatches:COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); PfamMatches:PF00230.14 YP_006230820.1 COGmatches:COG0554 Glycerol kinase; PfamMatches:PF00370.15 YP_006230821.1 COGmatches:COG0578 Glycerol-3-phosphate dehydrogenase; PfamMatches:PF01266.18 YP_006230822.1 COGmatches:COG1109 Phosphomannomutase; PfamMatches:PF02878.10 YP_006230823.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF07730.7 YP_006230824.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006230825.1 COGmatches:COG0431 Predicted flavoprotein; PfamMatches:PF03358.9 YP_006230828.1 COGmatches:COG1388 FOG: LysM repeat; PfamMatches:PF01476.14 YP_006230829.1 COGmatches:COG1959 Predicted transcriptional regulator; PfamMatches:PF02082.14 YP_006230830.1 PfamMatches:PF05552.6 YP_006230831.1 COGmatches:COG2719 Uncharacterized conserved protein; PfamMatches:PF04293.7 YP_006230832.1 COGmatches:COG1785 Alkaline phosphatase; PfamMatches:PF00245.14 YP_006230833.1 COGmatches:COG0791 Cell wall-associated hydrolases (invasion-associated proteins); PfamMatches:PF01476.14 YP_006230834.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006230835.1 COGmatches:COG0372 Citrate synthase; PfamMatches:PF00285.15 YP_006230836.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006230837.1 COGmatches:COG0531 Amino acid transporters; PfamMatches:PF00324.15 YP_006230838.1 COGmatches:COG0733 Na+-dependent transporters of the SNF family; PfamMatches:PF00209.12 YP_006230839.1 COGmatches:COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; PfamMatches:PF00155.15 YP_006230840.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006230843.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF04542.8' YP_006230844.1 COGmatches:COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); PfamMatches:PF00248.15 YP_006230845.1 COGmatches:COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; PfamMatches:PF01553.15 YP_006230846.1 COGmatches:COG1253 Hemolysins and related proteins containing CBS domains; PfamMatches:PF01595.14 YP_006230847.1 COGmatches:COG0789 Predicted transcriptional regulators; PfamMatches:PF00376.17 YP_006230848.1 COGmatches:COG0436 Aspartate/tyrosine/aromatic aminotransferase; PfamMatches:PF00155.15 YP_006230849.1 COGmatches:COG1253 Hemolysins and related proteins containing CBS domains; PfamMatches:PF01595.14 YP_006230850.1 COGmatches:COG0239 Integral membrane protein possibly involved in chromosome condensation; PfamMatches:PF02537.9 YP_006230851.1 COGmatches:COG0239 Integral membrane protein possibly involved in chromosome condensation; PfamMatches:PF02537.9 YP_006230852.1 COGmatches:COG0584 Glycerophosphoryl diester phosphodiesterase; PfamMatches:PF03009.11 YP_006230854.1 COGmatches:COG0668 Small-conductance mechanosensitive channel; PfamMatches:PF00924.12 YP_006230855.1 'COGmatches:COG0846 NAD-dependent protein deacetylases, SIR2 family; PfamMatches:PF02146.1' YP_006230856.1 COGmatches:COG0726 Predicted xylanase/chitin deacetylase; PfamMatches:PF01522.15 YP_006230857.1 COGmatches:COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PfamMatches:PF01063.13 YP_006230858.1 COGmatches:COG1757 Na+/H+ antiporter; PfamMatches:PF03553.8 YP_006230859.1 COGmatches:COG0589 Universal stress protein UspA and related nucleotide-binding proteins; PfamMatches:PF00582.20 YP_006230861.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006230862.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006230863.1 COGmatches:COG0702 Predicted nucleoside-diphosphate-sugar epimerases; PfamMatches:PF01118.18 YP_006230865.1 PfamMatches:PF00269.14 YP_006230868.1 PfamMatches:PF02955.10 YP_006230869.1 COGmatches:COG4399 Uncharacterized protein conserved in bacteria; PfamMatches:PF04286.6 YP_006230870.1 COGmatches:COG3679 Uncharacterized conserved protein; PfamMatches:PF06133.5 YP_006230871.1 COGmatches:COG4335 DNA alkylation repair enzyme; PfamMatches:PF08713.5 YP_006230872.1 COGmatches:COG0561 Predicted hydrolases of the HAD superfamily; PfamMatches:PF08282.6 YP_006230874.1 COGmatches:COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; PfamMatches:PF04055.15 YP_006230875.1 'COGmatches:COG0475 Kef-type K+ transport systems, membrane components; PfamMatches:PF00999.15' YP_006230876.1 'COGmatches:COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels; PfamMatches:PF02080.15' YP_006230878.1 COGmatches:COG1024 Enoyl-CoA hydratase/carnithine racemase; PfamMatches:PF00378.14 YP_006230880.1 'COGmatches:COG4152 ABC-type uncharacterized transport system, ATPase component; PfamMatches:PF00005.21' YP_006230881.1 'COGmatches:COG1668 ABC-type Na+ efflux pump, permease component; PfamMatches:PF12698.1' YP_006230882.1 COGmatches:COG0420 DNA repair exonuclease; PfamMatches:PF12850.1 YP_006230883.1 COGmatches:COG4717 Uncharacterized conserved protein YP_006230884.1 COGmatches:COG3481 Predicted HD-superfamily hydrolase; PfamMatches:PF01966.16 YP_006230886.1 COGmatches:COG0760 Parvulin-like peptidyl-prolyl isomerase; PfamMatches:PF00639.15 YP_006230887.1 PfamMatches:PF09680.4 YP_006230889.1 PfamMatches:PF11667.2 YP_006230890.1 PfamMatches:PF08963.4 YP_006230891.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230892.1 COGmatches:COG4980 Gas vesicle protein; PfamMatches:PF12732.1 YP_006230895.1 COGmatches:COG1932 Phosphoserine aminotransferase; PfamMatches:PF00266.1 YP_006230896.1 COGmatches:COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; PfamMatches:PF01230.1 YP_006230898.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006230899.1 'COGmatches:COG4473 Predicted ABC-type exoprotein transport system, permease component; PfamMatches:PF05975.6' YP_006230900.1 PfamMatches:PF12787.1 YP_006230901.1 COGmatches:COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; PfamMatches:PF01546.22 YP_006230905.1 COGmatches:COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides; PfamMatches:PF03992.10 YP_006230906.1 COGmatches:COG0744 Membrane carboxypeptidase (penicillin-binding protein); PfamMatches:PF00912.16 YP_006230907.1 COGmatches:COG0407 Uroporphyrinogen-III decarboxylase; PfamMatches:PF01208.11 YP_006230909.1 COGmatches:COG0276 Protoheme ferro-lyase (ferrochelatase); PfamMatches:PF00762.1 YP_006230910.1 COGmatches:COG1232 Protoporphyrinogen oxidase; PfamMatches:PF01593.18 YP_006230911.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006230912.1 COGmatches:COG1511 Predicted membrane protein; PfamMatches:PF12698.1 YP_006230913.1 COGmatches:COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; PfamMatches:PF08541.1 YP_006230914.1 COGmatches:COG4377 Predicted membrane protein; PfamMatches:PF10086.3 YP_006230916.1 COGmatches:COG1363 Cellulase M and related proteins; PfamMatches:PF05343.8 YP_006230917.1 COGmatches:COG4405 Uncharacterized protein conserved in bacteria; PfamMatches:PF04266.8 YP_006230918.1 COGmatches:COG1301 Na+/H+-dicarboxylate symporters; PfamMatches:PF00375.12 YP_006230920.1 COGmatches:COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; PfamMatches:PF12706.1 YP_006230921.1 COGmatches:COG0095 Lipoate-protein ligase A; PfamMatches:PF10437.3 YP_006230922.1 COGmatches:COG0702 Predicted nucleoside-diphosphate-sugar epimerases; PfamMatches:PF05368.7 YP_006230923.1 COGmatches:COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PfamMatches:PF00501.22 YP_006230925.1 COGmatches:COG0501 Zn-dependent protease with chaperone function; PfamMatches:PF01435.12 YP_006230926.1 COGmatches:COG1404 Subtilisin-like serine proteases; PfamMatches:PF00082.16 YP_006230927.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006230928.1 COGmatches:COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; PfamMatches:PF00107.20 YP_006230930.1 'COGmatches:COG4594 ABC-type Fe3+-citrate transport system, periplasmic component; PfamMatches:PF01497.12' YP_006230931.1 'COGmatches:COG0406 Fructose-2,6-bisphosphatase; PfamMatches:PF00300.1' YP_006230932.1 COGmatches:COG0183 Acetyl-CoA acetyltransferase; PfamMatches:PF00108.1 YP_006230933.1 COGmatches:COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PfamMatches:PF00501.22 YP_006230934.1 COGmatches:COG1268 Uncharacterized conserved protein; PfamMatches:PF02632.8 YP_006230935.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006230936.1 COGmatches:COG0665 Glycine/D-amino acid oxidases (deaminating); PfamMatches:PF01266.18 YP_006230937.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006230938.1 PfamMatches:PF08858.4 YP_006230939.1 COGmatches:COG4903 Genetic competence transcription factor; PfamMatches:PF06338.5 YP_006230940.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006230941.1 PfamMatches:PF05901.5 YP_006230942.1 COGmatches:COG0591 Na+/proline symporter; PfamMatches:PF00474.11 YP_006230943.1 PfamMatches:PF11755.2 YP_006230945.1 COGmatches:COG0398 Uncharacterized conserved protein; PfamMatches:PF09335.5 YP_006230946.1 COGmatches:COG0681 Signal peptidase I; PfamMatches:PF00717.17 YP_006230947.1 COGmatches:COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; PfamMatches:PF01494.13 YP_006230948.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006230950.1 COGmatches:COG3180 Putative ammonia monooxygenase; PfamMatches:PF05145.6 YP_006230951.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230952.1 'COGmatches:COG4533 ABC-type uncharacterized transport system, periplasmic component; PfamMatches:PF00496.16' YP_006230953.1 COGmatches:COG1145 Ferredoxin; PfamMatches:PF03860.10 YP_006230954.1 COGmatches:COG1633 Uncharacterized conserved protein; PfamMatches:PF02915.11 YP_006230955.1 'COGmatches:COG3857 ATP-dependent nuclease, subunit B; PfamMatches:PF12705.1' YP_006230956.1 COGmatches:COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); PfamMatches:PF00580.15 YP_006230957.1 COGmatches:COG0420 DNA repair exonuclease; PfamMatches:PF12850.1 YP_006230958.1 COGmatches:COG0419 ATPase involved in DNA repair YP_006230959.1 COGmatches:COG1403 Restriction endonuclease YP_006230960.1 PfamMatches:PF10676.3 YP_006230961.1 PfamMatches:PF10970.2 YP_006230963.1 PfamMatches:PF10737.3 YP_006230964.1 PfamMatches:PF10803.2 YP_006230965.1 PfamMatches:PF10676.3 YP_006230966.1 PfamMatches:PF09388.4 YP_006230967.1 PfamMatches:PF08757.5 YP_006230969.1 'COGmatches:COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); PfamMatches:PF01557.12' YP_006230970.1 PfamMatches:PF07457.5 YP_006230971.1 COGmatches:COG1404 Subtilisin-like serine proteases; PfamMatches:PF00082.16 YP_006230972.1 PfamMatches:PF10949.2 YP_006230973.1 COGmatches:COG0367 Asparagine synthase (glutamine-hydrolyzing); PfamMatches:PF00733.15 YP_006230974.1 COGmatches:COG1562 Phytoene/squalene synthetase; PfamMatches:PF00494.13 YP_006230975.1 COGmatches:COG0534 Na+-driven multidrug efflux pump; PfamMatches:PF01554.12 YP_006230976.1 COGmatches:COG2207 AraC-type DNA-binding domain-containing proteins; PfamMatches:PF00165.17 YP_006230977.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00532.15 YP_006230979.1 COGmatches:COG0673 Predicted dehydrogenases and related proteins; PfamMatches:PF01408.16 YP_006230980.1 COGmatches:COG2318 Uncharacterized protein conserved in bacteria; PfamMatches:PF05163.6 YP_006230981.1 COGmatches:COG1279 Lysine efflux permease; PfamMatches:PF01810.12 YP_006230982.1 COGmatches:COG1357 Uncharacterized low-complexity proteins; PfamMatches:PF00805.16 YP_006230983.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006230984.1 COGmatches:COG0529 Adenylylsulfate kinase and related kinases; PfamMatches:PF01583.14 YP_006230985.1 COGmatches:COG2046 ATP sulfurylase (sulfate adenylyltransferase); PfamMatches:PF01747.11 YP_006230986.1 COGmatches:COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; PfamMatches:PF01507.13 YP_006230987.1 COGmatches:COG2045 Phosphosulfolactate phosphohydrolase and related enzymes; PfamMatches:PF04029.8 YP_006230988.1 COGmatches:COG1809 Uncharacterized conserved protein; PfamMatches:PF02679.9 YP_006230989.1 COGmatches:COG1284 Uncharacterized conserved protein; PfamMatches:PF02588.9 YP_006230990.1 COGmatches:COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; PfamMatches:PF01188.1 YP_006230991.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006230992.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006230993.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006230994.1 'COGmatches:COG0685 5,10-methylenetetrahydrofolate reductase; PfamMatches:PF02574.10' YP_006230995.1 COGmatches:COG1666 Uncharacterized protein conserved in bacteria; PfamMatches:PF04461.7 YP_006230996.1 COGmatches:COG2996 Uncharacterized protein conserved in bacteria YP_006231000.1 COGmatches:COG1695 Predicted transcriptional regulators; PfamMatches:PF03551.8 YP_006231002.1 PfamMatches:PF12650.1 YP_006231003.1 COGmatches:COG3227 Zinc metalloprotease (elastase); PfamMatches:PF02868.9 YP_006231004.1 COGmatches:COG1307 Uncharacterized protein conserved in bacteria; PfamMatches:PF02645.10 YP_006231005.1 COGmatches:COG1284 Uncharacterized conserved protein; PfamMatches:PF02588.9 YP_006231006.1 PfamMatches:PF12690.1 YP_006231007.1 PfamMatches:PF12758.1 YP_006231009.1 COGmatches:COG0561 Predicted hydrolases of the HAD superfamily; PfamMatches:PF08282.6 YP_006231010.1 COGmatches:COG1073 Hydrolases of the alpha/beta superfamily; PfamMatches:PF12695.1 YP_006231011.1 COGmatches:COG2151 Predicted metal-sulfur cluster biosynthetic enzyme; PfamMatches:PF01883.13 YP_006231012.1 PfamMatches:PF01679.11 YP_006231013.1 COGmatches:COG0277 FAD/FMN-containing dehydrogenases; PfamMatches:PF01565.17 YP_006231014.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006231015.1 COGmatches:COG0002 Acetylglutamate semialdehyde dehydrogenase; PfamMatches:PF01118.18 YP_006231016.1 COGmatches:COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); PfamMatches:PF01960.12 YP_006231017.1 COGmatches:COG0548 Acetylglutamate kinase; PfamMatches:PF00696.22 YP_006231018.1 COGmatches:COG4992 Ornithine/acetylornithine aminotransferase; PfamMatches:PF00202.15 YP_006231019.1 COGmatches:COG0505 Carbamoylphosphate synthase small subunit; PfamMatches:PF00988.16 YP_006231020.1 COGmatches:COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); PfamMatches:PF02786.11 YP_006231021.1 COGmatches:COG0078 Ornithine carbamoyltransferase; PfamMatches:PF00185.1 YP_006231023.1 PfamMatches:PF11151.2 YP_006231026.1 'COGmatches:COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; PfamMatches:PF02608.8' YP_006231027.1 PfamMatches:PF10815.2 YP_006231029.1 COGmatches:COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; PfamMatches:PF08541.1 YP_006231030.1 COGmatches:COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; PfamMatches:PF00109.20 YP_006231031.1 COGmatches:COG5504 Predicted Zn-dependent protease; PfamMatches:PF10026.3 YP_006231032.1 'COGmatches:COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PfamMatches:PF08352.6' YP_006231033.1 'COGmatches:COG4608 ABC-type oligopeptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006231034.1 'COGmatches:COG0747 ABC-type dipeptide transport system, periplasmic component; PfamMatches:PF00496.16' YP_006231035.1 'COGmatches:COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; PfamMatches:PF00528.16' YP_006231036.1 'COGmatches:COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; PfamMatches:PF00528.16' YP_006231037.1 PfamMatches:PF12227.2 YP_006231038.1 COGmatches:COG0180 Tryptophanyl-tRNA synthetase; PfamMatches:PF00579.19 YP_006231039.1 'COGmatches:COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; PfamMatches:PF00528.16' YP_006231040.1 'COGmatches:COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; PfamMatches:PF00528.16' YP_006231041.1 'COGmatches:COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PfamMatches:PF00005.21' YP_006231042.1 'COGmatches:COG4608 ABC-type oligopeptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006231043.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006231045.1 PfamMatches:PF00583.18 YP_006231046.1 'COGmatches:COG1393 Arsenate reductase and related proteins, glutaredoxin family; PfamMatches:PF03960.9' YP_006231047.1 'COGmatches:COG0861 Membrane protein TerC, possibly involved in tellurium resistance; PfamMatches:PF03741.10' YP_006231048.1 'COGmatches:COG4862 Negative regulator of genetic competence, sporulation and motility; PfamMatches:PF05389.6' YP_006231050.1 COGmatches:COG4469 Competence protein; PfamMatches:PF06054.5 YP_006231051.1 COGmatches:COG1164 Oligoendopeptidase F; PfamMatches:PF01432.14 YP_006231054.1 COGmatches:COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis; PfamMatches:PF01323.14 YP_006231055.1 COGmatches:COG2346 Truncated hemoglobins; PfamMatches:PF01152.15 YP_006231056.1 COGmatches:COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); PfamMatches:PF01464.14 YP_006231057.1 COGmatches:COG4116 Uncharacterized protein conserved in bacteria; PfamMatches:PF01928.15 YP_006231059.1 COGmatches:COG2357 Uncharacterized protein conserved in bacteria; PfamMatches:PF04607.11 YP_006231060.1 COGmatches:COG0061 Predicted sugar kinase; PfamMatches:PF01513.15 YP_006231061.1 'COGmatches:COG0564 Pseudouridylate synthases, 23S RNA-specific; PfamMatches:PF00849.16' YP_006231062.1 COGmatches:COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; PfamMatches:PF00149.22 YP_006231063.1 'COGmatches:COG0475 Kef-type K+ transport systems, membrane components; PfamMatches:PF00999.15' YP_006231064.1 COGmatches:COG0819 Putative transcription activator; PfamMatches:PF03070.1 YP_006231065.1 COGmatches:COG0352 Thiamine monophosphate synthase; PfamMatches:PF02581.11 YP_006231066.1 COGmatches:COG0665 Glycine/D-amino acid oxidases (deaminating); PfamMatches:PF01266.18 YP_006231067.1 COGmatches:COG2104 Sulfur transfer protein involved in thiamine biosynthesis; PfamMatches:PF02597.14 YP_006231068.1 COGmatches:COG2022 Uncharacterized enzyme of thiazole biosynthesis; PfamMatches:PF05690.8 YP_006231069.1 COGmatches:COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; PfamMatches:PF00899.15 YP_006231070.1 COGmatches:COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; PfamMatches:PF08543.6 YP_006231071.1 COGmatches:COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); PfamMatches:PF00106.19 YP_006231073.1 PfamMatches:PF10612.3 YP_006231074.1 PfamMatches:PF10612.3 YP_006231075.1 PfamMatches:PF07552.5 YP_006231077.1 PfamMatches:PF07552.5 YP_006231078.1 PfamMatches:PF07098.5 YP_006231081.1 PfamMatches:PF09680.4 YP_006231083.1 COGmatches:COG0210 Superfamily I DNA and RNA helicases; PfamMatches:PF00580.15 YP_006231085.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006231086.1 COGmatches:COG1514 2'-5' RNA ligase; PfamMatches:PF02834.10 YP_006231087.1 COGmatches:COG2382 Enterochelin esterase and related enzymes; PfamMatches:PF00756.14 YP_006231089.1 COGmatches:COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; PfamMatches:PF01053.14 YP_006231090.1 COGmatches:COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; PfamMatches:PF01053.14 YP_006231091.1 'COGmatches:COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; PfamMatches:PF00583.18' YP_006231092.1 COGmatches:COG5505 Predicted integral membrane protein; PfamMatches:PF05684.6 YP_006231096.1 COGmatches:COG5444 Uncharacterized conserved protein; PfamMatches:PF04740.6 YP_006231101.1 COGmatches:COG1359 Uncharacterized conserved protein; PfamMatches:PF03992.10 YP_006231103.1 COGmatches:COG3711 Transcriptional antiterminator; PfamMatches:PF00874.14 YP_006231104.1 'COGmatches:COG1299 Phosphotransferase system, fructose-specific IIC component; PfamMatches:PF00359.1' YP_006231105.1 COGmatches:COG1482 Phosphomannose isomerase; PfamMatches:PF01238.15 YP_006231106.1 PfamMatches:PF11208.2 YP_006231107.1 'COGmatches:COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; PfamMatches:PF00583.18' YP_006231109.1 COGmatches:COG2606 Uncharacterized conserved protein; PfamMatches:PF04073.9 YP_006231113.1 COGmatches:COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); PfamMatches:PF01040.12 YP_006231115.1 PfamMatches:PF01522.15 YP_006231116.1 PfamMatches:PF10901.2 YP_006231118.1 COGmatches:COG5504 Predicted Zn-dependent protease; PfamMatches:PF10026.3 YP_006231119.1 PfamMatches:PF10990.2 YP_006231121.1 COGmatches:COG3383 Uncharacterized anaerobic dehydrogenase; PfamMatches:PF00384.16 YP_006231122.1 COGmatches:COG2427 Uncharacterized conserved protein; PfamMatches:PF07849.5 YP_006231123.1 PfamMatches:PF11611.2 YP_006231124.1 COGmatches:COG1051 ADP-ribose pyrophosphatase; PfamMatches:PF12535.2 YP_006231126.1 COGmatches:COG2124 Cytochrome P450; PfamMatches:PF00067.16 YP_006231127.1 'COGmatches:COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase; PfamMatches:PF00201.12' YP_006231129.1 COGmatches:COG1587 Uroporphyrinogen-III synthase; PfamMatches:PF02602.9 YP_006231130.1 'COGmatches:COG0390 ABC-type uncharacterized transport system, permease component; PfamMatches:PF03649.7; TIGRfamMatches:TIGR00245' YP_006231131.1 'COGmatches:COG1117 ABC-type phosphate transport system, ATPase component; PfamMatches:PF00005.21' YP_006231133.1 COGmatches:COG4297 Uncharacterized protein containing double-stranded beta helix domain; PfamMatches:PF07883.5 YP_006231134.1 COGmatches:COG2427 Uncharacterized conserved protein; PfamMatches:PF07849.5 YP_006231135.1 'COGmatches:COG1252 NADH dehydrogenase, FAD-containing subunit; PfamMatches:PF07992.8' YP_006231137.1 COGmatches:COG1904 Glucuronate isomerase; PfamMatches:PF02614.8 YP_006231138.1 COGmatches:COG2211 Na+/melibiose symporter and related transporters; PfamMatches:PF07690.10 YP_006231139.1 COGmatches:COG2055 Malate/L-lactate dehydrogenases; PfamMatches:PF02615.8 YP_006231140.1 COGmatches:COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; PfamMatches:PF08240.6 YP_006231141.1 COGmatches:COG1312 D-mannonate dehydratase; PfamMatches:PF03786.7 YP_006231142.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006231143.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006231144.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00532.15 YP_006231145.1 COGmatches:COG0246 Mannitol-1-phosphate/altronate dehydrogenases; PfamMatches:PF08125.7 YP_006231146.1 COGmatches:COG2721 Altronate dehydratase; PfamMatches:PF04295.7 YP_006231147.1 COGmatches:COG0730 Predicted permeases; PfamMatches:PF01925.13 YP_006231148.1 COGmatches:COG2318 Uncharacterized protein conserved in bacteria; PfamMatches:PF05163.6 YP_006231149.1 COGmatches:COG0465 ATP-dependent Zn proteases; PfamMatches:PF00004.23 YP_006231150.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF07719.11 YP_006231152.1 COGmatches:COG2350 Uncharacterized protein conserved in bacteria; PfamMatches:PF03795.8 YP_006231153.1 COGmatches:COG5632 N-acetylmuramoyl-L-alanine amidase; PfamMatches:PF01510.19 YP_006231154.1 PfamMatches:PF08000.5 YP_006231155.1 COGmatches:COG4195 Phage-related replication protein; PfamMatches:PF05908.5 YP_006231156.1 COGmatches:COG3546 Mn-containing catalase; PfamMatches:PF05067.6 YP_006231157.1 PfamMatches:PF06114.7 YP_006231158.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF12844.1 YP_006231161.1 COGmatches:COG1484 DNA replication protein; PfamMatches:PF00308.12 YP_006231166.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF08281.6' YP_006231167.1 'COGmatches:COG3728 Phage terminase, small subunit; PfamMatches:PF03592.10' YP_006231168.1 COGmatches:COG1783 Phage terminase large subunit; PfamMatches:PF04466.7 YP_006231169.1 COGmatches:COG5518 Bacteriophage capsid portal protein; PfamMatches:PF04860.6 YP_006231171.1 PfamMatches:PF05065.7 YP_006231172.1 PfamMatches:PF11436.2 YP_006231173.1 PfamMatches:PF12206.2 YP_006231177.1 PfamMatches:PF04984.8 YP_006231178.1 PfamMatches:PF09393.4 YP_006231179.1 PfamMatches:PF08890.5 YP_006231181.1 COGmatches:COG3953 SLT domain proteins; PfamMatches:PF01464.14 YP_006231182.1 COGmatches:COG1652 Uncharacterized protein containing LysM domain; PfamMatches:PF01476.14 YP_006231183.1 PfamMatches:PF05954.5 YP_006231184.1 PfamMatches:PF10844.2 YP_006231185.1 PfamMatches:PF10934.2 YP_006231186.1 COGmatches:COG3299 Uncharacterized homolog of phage Mu protein gp47; PfamMatches:PF04865.8 YP_006231187.1 PfamMatches:PF10076.3 YP_006231190.1 PfamMatches:PF09636.4 YP_006231191.1 PfamMatches:PF09693.4 YP_006231193.1 PfamMatches:PF10779.3 YP_006231194.1 PfamMatches:PF04688.7 YP_006231195.1 COGmatches:COG5632 N-acetylmuramoyl-L-alanine amidase; PfamMatches:PF01510.19 YP_006231199.1 COGmatches:COG0306 Phosphate/sulphate permeases; PfamMatches:PF01384.14 YP_006231200.1 COGmatches:COG1392 Phosphate transport regulator (distant homolog of PhoU); PfamMatches:PF01865.10 YP_006231201.1 COGmatches:COG0531 Amino acid transporters; PfamMatches:PF00324.15 YP_006231202.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF00903.19 YP_006231204.1 COGmatches:COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; PfamMatches:PF02366.12 YP_006231205.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006231207.1 'COGmatches:COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; PfamMatches:PF00089.20' YP_006231208.1 COGmatches:COG0345 Pyrroline-5-carboxylate reductase; PfamMatches:PF03807.11 YP_006231209.1 COGmatches:COG2362 D-aminopeptidase; PfamMatches:PF04951.7 YP_006231210.1 'COGmatches:COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; PfamMatches:PF00528.16' YP_006231211.1 'COGmatches:COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; PfamMatches:PF00528.16' YP_006231212.1 'COGmatches:COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PfamMatches:PF00005.21' YP_006231213.1 'COGmatches:COG4166 ABC-type oligopeptide transport system, periplasmic component; PfamMatches:PF00496.16' YP_006231215.1 'COGmatches:COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; PfamMatches:PF02016.9' YP_006231216.1 COGmatches:COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; PfamMatches:PF01188.1 YP_006231217.1 COGmatches:COG0791 Cell wall-associated hydrolases (invasion-associated proteins); PfamMatches:PF00877.13 YP_006231218.1 'COGmatches:COG4608 ABC-type oligopeptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006231219.1 COGmatches:COG2706 3-carboxymuconate cyclase; PfamMatches:PF10282.3 YP_006231220.1 COGmatches:COG1834 N-Dimethylarginine dimethylaminohydrolase; PfamMatches:PF02274.11 YP_006231221.1 COGmatches:COG1607 Acyl-CoA hydrolase; PfamMatches:PF03061.16 YP_006231222.1 COGmatches:COG1017 (ferredoxin-NADPH reductases) family 1; PfamMatches:PF00175.15 YP_006231224.1 COGmatches:COG2323 Predicted membrane protein; PfamMatches:PF04239.6 YP_006231225.1 PfamMatches:PF12867.1 YP_006231226.1 'COGmatches:COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; PfamMatches:PF00583.18' YP_006231227.1 COGmatches:COG2076 Membrane transporters of cations and cationic drugs; PfamMatches:PF00893.13 YP_006231228.1 COGmatches:COG2076 Membrane transporters of cations and cationic drugs; PfamMatches:PF00893.13 YP_006231229.1 COGmatches:COG0788 Formyltetrahydrofolate hydrolase; PfamMatches:PF00551.13 YP_006231230.1 COGmatches:COG0263 Glutamate 5-kinase; PfamMatches:PF00696.22 YP_006231231.1 COGmatches:COG0014 Gamma-glutamyl phosphate reductase; PfamMatches:PF00171.1 YP_006231232.1 'COGmatches:COG1764 Predicted redox protein, regulator of disulfide bond formation; PfamMatches:PF02566.13' YP_006231233.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006231234.1 'COGmatches:COG1764 Predicted redox protein, regulator of disulfide bond formation; PfamMatches:PF02566.13' YP_006231236.1 COGmatches:COG0590 Cytosine/adenosine deaminases; PfamMatches:PF00383.1 YP_006231237.1 'COGmatches:COG0406 Fructose-2,6-bisphosphatase; PfamMatches:PF00300.1' YP_006231238.1 COGmatches:COG0620 Methionine synthase II (cobalamin-independent); PfamMatches:PF01717.12 YP_006231240.1 COGmatches:COG1404 Subtilisin-like serine proteases; PfamMatches:PF00082.16 YP_006231242.1 PfamMatches:PF01740.15 YP_006231243.1 'COGmatches:COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; PfamMatches:PF02361.10' YP_006231244.1 'COGmatches:COG1122 ABC-type cobalt transport system, ATPase component; PfamMatches:PF00005.21' YP_006231245.1 COGmatches:COG4721 Predicted membrane protein; PfamMatches:PF09819.3 YP_006231246.1 PfamMatches:PF07615.5 YP_006231247.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006231248.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006231249.1 COGmatches:COG3212 Predicted membrane protein; PfamMatches:PF03413.13 YP_006231251.1 COGmatches:COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); PfamMatches:PF01769.10 YP_006231252.1 COGmatches:COG0789 Predicted transcriptional regulators; PfamMatches:PF00376.17 YP_006231255.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006231256.1 COGmatches:COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; PfamMatches:PF06925.5 YP_006231258.1 COGmatches:COG1408 Predicted phosphohydrolases; PfamMatches:PF12850.1 YP_006231260.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006231261.1 COGmatches:COG1793 ATP-dependent DNA ligase; PfamMatches:PF01068.1 YP_006231262.1 COGmatches:COG1273 Uncharacterized conserved protein; PfamMatches:PF02735.10 YP_006231263.1 COGmatches:COG2200 FOG: EAL domain; PfamMatches:PF00563.14 YP_006231264.1 COGmatches:COG0586 Uncharacterized membrane-associated protein; PfamMatches:PF09335.5 YP_006231265.1 'COGmatches:COG0861 Membrane protein TerC, possibly involved in tellurium resistance; PfamMatches:PF03741.10' YP_006231266.1 COGmatches:COG1191 DNA-directed RNA polymerase specialized sigma subunit; PfamMatches:PF04542.8 YP_006231267.1 PfamMatches:PF12791.1 YP_006231268.1 PfamMatches:PF00269.14 YP_006231269.1 PfamMatches:PF08876.5 YP_006231270.1 COGmatches:COG0501 Zn-dependent protease with chaperone function; PfamMatches:PF01435.12 YP_006231271.1 'COGmatches:COG0168 Trk-type K+ transport systems, membrane components; PfamMatches:PF02386.10' YP_006231274.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006231275.1 COGmatches:COG0350 Methylated DNA-protein cysteine methyltransferase; PfamMatches:PF01035.1 YP_006231277.1 'COGmatches:COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family; PfamMatches:PF01008.11' YP_006231278.1 COGmatches:COG4857 Predicted kinase; PfamMatches:PF01636.17 YP_006231279.1 COGmatches:COG0388 Predicted amidohydrolase; PfamMatches:PF00795.1 YP_006231280.1 COGmatches:COG0436 Aspartate/tyrosine/aromatic aminotransferase; PfamMatches:PF00155.15 YP_006231281.1 'COGmatches:COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit; PfamMatches:PF00016.1' YP_006231282.1 'COGmatches:COG4359 Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling; PfamMatches:PF12710.1' YP_006231283.1 COGmatches:COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; PfamMatches:PF00596.15 YP_006231284.1 'COGmatches:COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain; PfamMatches:PF03079.8' YP_006231285.1 COGmatches:COG3339 Uncharacterized conserved protein; PfamMatches:PF06803.6 YP_006231286.1 PfamMatches:PF09388.4 YP_006231288.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006231289.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006231290.1 COGmatches:COG1360 Flagellar motor protein; PfamMatches:PF00691.14 YP_006231291.1 COGmatches:COG1291 Flagellar motor component; PfamMatches:PF01618.10 YP_006231292.1 'COGmatches:COG0542 ATPases with chaperone activity, ATP-binding subunit; PfamMatches:PF07724.8' YP_006231293.1 COGmatches:COG3949 Uncharacterized membrane protein YP_006231294.1 COGmatches:COG0603 Predicted PP-loop superfamily ATPase; PfamMatches:PF06508.7; TIGRfamMatches:TIGR00364 YP_006231295.1 COGmatches:COG0720 6-pyruvoyl-tetrahydropterin synthase; PfamMatches:PF01242.1 YP_006231296.1 COGmatches:COG0602 Organic radical activating enzymes; PfamMatches:PF04055.15 YP_006231297.1 PfamMatches:PF12844.1 YP_006231299.1 PfamMatches:PF01764.1 YP_006231302.1 COGmatches:COG0780 Enzyme related to GTP cyclohydrolase I YP_006231303.1 PfamMatches:PF11514.2 YP_006231304.1 COGmatches:COG4873 Uncharacterized protein conserved in bacteria; PfamMatches:PF09953.3 YP_006231306.1 COGmatches:COG3773 Cell wall hydrolyses involved in spore germination; PfamMatches:PF07486.6 YP_006231307.1 COGmatches:COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; PfamMatches:PF01943.11 YP_006231308.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00578.15 YP_006231309.1 COGmatches:COG2217 Cation transport ATPase; PfamMatches:PF00122.14 YP_006231312.1 COGmatches:COG0006 Xaa-Pro aminopeptidase; PfamMatches:PF00557.1 YP_006231314.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00532.15 YP_006231315.1 COGmatches:COG3711 Transcriptional antiterminator; PfamMatches:PF00874.14 YP_006231316.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF02378.12' YP_006231317.1 'COGmatches:COG1925 Phosphotransferase system, HPr-related proteins; PfamMatches:PF00381.13' YP_006231318.1 COGmatches:COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); PfamMatches:PF02896.12 YP_006231319.1 PfamMatches:PF11132.2 YP_006231320.1 COGmatches:COG1533 DNA repair photolyase YP_006231321.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006231322.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006231324.1 COGmatches:COG4257 Streptogramin lyase YP_006231325.1 COGmatches:COG2340 Uncharacterized protein with SCP/PR1 domains; PfamMatches:PF00188.20 YP_006231327.1 COGmatches:COG0768 Cell division protein FtsI/penicillin-binding protein 2; PfamMatches:PF00905.16 YP_006231328.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF00989.18 YP_006231329.1 COGmatches:COG0436 Aspartate/tyrosine/aromatic aminotransferase; PfamMatches:PF00155.15 YP_006231331.1 COGmatches:COG0835 Chemotaxis signal transduction protein; PfamMatches:PF01584.13 YP_006231333.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006231334.1 COGmatches:COG1376 Uncharacterized protein conserved in bacteria; PfamMatches:PF03734.8 YP_006231335.1 COGmatches:COG1408 Predicted phosphohydrolases; PfamMatches:PF00149.22 YP_006231336.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006231337.1 COGmatches:COG2200 FOG: EAL domain; PfamMatches:PF10388.3 YP_006231339.1 COGmatches:COG4703 Uncharacterized protein conserved in bacteria; PfamMatches:PF08796.4 YP_006231340.1 COGmatches:COG1978 Uncharacterized protein conserved in bacteria; PfamMatches:PF04308.6 YP_006231342.1 COGmatches:COG0517 FOG: CBS domain; PfamMatches:PF00571.22 YP_006231343.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006231344.1 COGmatches:COG0716 Flavodoxins; PfamMatches:PF00258.19 YP_006231346.1 COGmatches:COG0716 Flavodoxins; PfamMatches:PF00258.19 YP_006231347.1 COGmatches:COG2171 Tetrahydrodipicolinate N-succinyltransferase; PfamMatches:PF08503.4 YP_006231348.1 COGmatches:COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; PfamMatches:PF01546.22 YP_006231349.1 PfamMatches:PF03698.7 YP_006231350.1 COGmatches:COG0668 Small-conductance mechanosensitive channel; PfamMatches:PF00924.12 YP_006231351.1 COGmatches:COG0450 Peroxiredoxin; PfamMatches:PF00578.15 YP_006231352.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00578.15 YP_006231355.1 COGmatches:COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; PfamMatches:PF12804.1 YP_006231356.1 COGmatches:COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; PfamMatches:PF00899.15 YP_006231357.1 COGmatches:COG0303 Molybdopterin biosynthesis enzyme; PfamMatches:PF03453.11 YP_006231358.1 COGmatches:COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; PfamMatches:PF03205.8 YP_006231359.1 'COGmatches:COG0314 Molybdopterin converting factor, large subunit; PfamMatches:PF02391.11' YP_006231360.1 'COGmatches:COG1977 Molybdopterin converting factor, small subunit; PfamMatches:PF02597.14' YP_006231361.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006231362.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006231363.1 PfamMatches:PF04893.11 YP_006231364.1 COGmatches:COG0845 Membrane-fusion protein; PfamMatches:PF12700.1 YP_006231365.1 'COGmatches:COG1136 ABC-type antimicrobial peptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006231366.1 'COGmatches:COG0577 ABC-type antimicrobial peptide transport system, permease component; PfamMatches:PF12704.1' YP_006231367.1 COGmatches:COG1349 Transcriptional regulators of sugar metabolism; PfamMatches:PF00455.16 YP_006231368.1 COGmatches:COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); PfamMatches:PF00294.18 YP_006231369.1 'COGmatches:COG1299 Phosphotransferase system, fructose-specific IIC component; PfamMatches:PF00359.1' YP_006231370.1 COGmatches:COG0681 Signal peptidase I; PfamMatches:PF00717.17 YP_006231372.1 COGmatches:COG0488 ATPase components of ABC transporters with duplicated ATPase domains; PfamMatches:PF00005.21 YP_006231373.1 COGmatches:COG1893 Ketopantoate reductase; PfamMatches:PF02558.10 YP_006231374.1 COGmatches:COG2309 Leucyl aminopeptidase (aminopeptidase T); PfamMatches:PF02073.9 YP_006231376.1 COGmatches:COG1077 Actin-like ATPase involved in cell morphogenesis; PfamMatches:PF06723.7 YP_006231378.1 COGmatches:COG2002 Regulators of stationary/sporulation gene expression; PfamMatches:PF04014.12 YP_006231379.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006231380.1 COGmatches:COG3703 Uncharacterized protein involved in cation transport; PfamMatches:PF06094.1 YP_006231381.1 'COGmatches:COG0569 K+ transport systems, NAD-binding component; PfamMatches:PF02254.12' YP_006231382.1 COGmatches:COG1001 Adenine deaminase; PfamMatches:PF01979.14 YP_006231383.1 COGmatches:COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily; PfamMatches:PF00753.21 YP_006231384.1 COGmatches:COG5503 Uncharacterized conserved small protein; PfamMatches:PF07288.5 YP_006231386.1 COGmatches:COG0561 Predicted hydrolases of the HAD superfamily; PfamMatches:PF08282.6 YP_006231387.1 COGmatches:COG0242 N-formylmethionyl-tRNA deformylase; PfamMatches:PF01327.15 YP_006231388.1 PfamMatches:PF09680.4 YP_006231389.1 PfamMatches:PF10368.3 YP_006231390.1 'COGmatches:COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; PfamMatches:PF00676.14' YP_006231391.1 'COGmatches:COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit; PfamMatches:PF02779.18' YP_006231392.1 'COGmatches:COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; PfamMatches:PF00198.17' YP_006231393.1 'COGmatches:COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; PfamMatches:PF07992.8' YP_006231396.1 COGmatches:COG1982 Arginine/lysine/ornithine decarboxylases; PfamMatches:PF01276.14 YP_006231397.1 COGmatches:COG4476 Uncharacterized protein conserved in bacteria; PfamMatches:PF05256.6 YP_006231398.1 COGmatches:COG4493 Uncharacterized protein conserved in bacteria; PfamMatches:PF06335.6 YP_006231400.1 'COGmatches:COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; PfamMatches:PF00459.19' YP_006231402.1 COGmatches:COG3315 O-Methyltransferase involved in polyketide biosynthesis; PfamMatches:PF04072.8 YP_006231403.1 COGmatches:COG3227 Zinc metalloprotease (elastase); PfamMatches:PF02868.9 YP_006231406.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF04542.8' YP_006231407.1 COGmatches:COG5660 Predicted integral membrane protein YP_006231410.1 COGmatches:COG1217 Predicted membrane GTPase involved in stress response; PfamMatches:PF00009.21 YP_006231412.1 COGmatches:COG4896 Uncharacterized protein conserved in bacteria; PfamMatches:PF09963.3 YP_006231413.1 PfamMatches:PF09580.4 YP_006231414.1 COGmatches:COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH; PfamMatches:PF02562.10 YP_006231416.1 COGmatches:COG2066 Glutaminase; PfamMatches:PF04960.9 YP_006231417.1 COGmatches:COG4838 Uncharacterized protein conserved in bacteria; PfamMatches:PF07408.5 YP_006231418.1 COGmatches:COG0772 Bacterial cell division membrane protein; PfamMatches:PF01098.13 YP_006231419.1 COGmatches:COG1038 Pyruvate carboxylase; PfamMatches:PF02786.11 YP_006231421.1 COGmatches:COG1612 Uncharacterized protein required for cytochrome oxidase assembly; PfamMatches:PF02628.9 YP_006231423.1 COGmatches:COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); PfamMatches:PF01040.12 YP_006231425.1 'COGmatches:COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; PfamMatches:PF00116.14' YP_006231426.1 'COGmatches:COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; PfamMatches:PF00115.14' YP_006231427.1 'COGmatches:COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; PfamMatches:PF00510.12' YP_006231428.1 'COGmatches:COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4; PfamMatches:PF03626.8' YP_006231429.1 COGmatches:COG3336 Predicted membrane protein; PfamMatches:PF09678.4 YP_006231430.1 PfamMatches:PF08868.4 YP_006231431.1 COGmatches:COG2340 Uncharacterized protein with SCP/PR1 domains; PfamMatches:PF00188.20 YP_006231434.1 COGmatches:COG3679 Uncharacterized conserved protein; PfamMatches:PF06133.5 YP_006231435.1 COGmatches:COG4471 Uncharacterized protein conserved in bacteria; PfamMatches:PF09902.3 YP_006231436.1 COGmatches:COG0742 N6-adenine-specific methylase; PfamMatches:PF03602.9; TIGRfamMatches:TIGR00095 YP_006231437.1 COGmatches:COG0669 Phosphopantetheine adenylyltransferase; PfamMatches:PF01467.1 YP_006231438.1 COGmatches:COG3314 Uncharacterized protein conserved in bacteria; PfamMatches:PF07670.8 YP_006231439.1 COGmatches:COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; PfamMatches:PF01734.1 YP_006231440.1 COGmatches:COG3480 Predicted secreted protein containing a PDZ domain; PfamMatches:PF05362.1 YP_006231441.1 COGmatches:COG1323 Predicted nucleotidyltransferase; PfamMatches:PF05636.5 YP_006231443.1 'COGmatches:COG1399 Predicted metal-binding, possibly nucleic acid-binding protein; PfamMatches:PF02620.11' YP_006231446.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006231447.1 COGmatches:COG1893 Ketopantoate reductase; PfamMatches:PF02558.10 YP_006231448.1 COGmatches:COG4365 Uncharacterized protein conserved in bacteria; PfamMatches:PF10079.3 YP_006231449.1 COGmatches:COG2001 Uncharacterized protein conserved in bacteria; PfamMatches:PF02381.12; TIGRfamMatches:TIGR00242 YP_006231450.1 COGmatches:COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; PfamMatches:PF01795.13; TIGRfamMatches:TIGR00006 YP_006231451.1 COGmatches:COG4839 Protein required for the initiation of cell division; PfamMatches:PF04977.9 YP_006231452.1 COGmatches:COG0768 Cell division protein FtsI/penicillin-binding protein 2; PfamMatches:PF00905.16 YP_006231453.1 COGmatches:COG0768 Cell division protein FtsI/penicillin-binding protein 2; PfamMatches:PF00905.16 YP_006231454.1 COGmatches:COG0769 UDP-N-acetylmuramyl tripeptide synthase; PfamMatches:PF08245.6 YP_006231456.1 COGmatches:COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; PfamMatches:PF00953.15 YP_006231457.1 COGmatches:COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; PfamMatches:PF08245.6 YP_006231458.1 COGmatches:COG0772 Bacterial cell division membrane protein; PfamMatches:PF01098.13 YP_006231459.1 COGmatches:COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; PfamMatches:PF03033.14 YP_006231460.1 COGmatches:COG0812 UDP-N-acetylmuramate dehydrogenase; PfamMatches:PF02873.10 YP_006231461.1 COGmatches:COG1589 Cell division septal protein; PfamMatches:PF08478.4 YP_006231462.1 COGmatches:COG3879 Uncharacterized protein conserved in bacteria; PfamMatches:PF05949.6 YP_006231463.1 COGmatches:COG3879 Uncharacterized protein conserved in bacteria; PfamMatches:PF05949.6 YP_006231464.1 COGmatches:COG3856 Uncharacterized conserved protein (small basic protein); PfamMatches:PF06947.6 YP_006231465.1 COGmatches:COG0849 Actin-like ATPase involved in cell division; PfamMatches:PF02491.14 YP_006231466.1 COGmatches:COG0206 Cell division GTPase; PfamMatches:PF00091.19 YP_006231467.1 COGmatches:COG4412 Uncharacterized protein conserved in bacteria; NOTE=COGmatches:COG1404 Subtilisin-like serine proteases; PfamMatches:PF00082.16 YP_006231468.1 PfamMatches:PF03419.7 YP_006231469.1 COGmatches:COG1191 DNA-directed RNA polymerase specialized sigma subunit; PfamMatches:PF04542.8 YP_006231470.1 COGmatches:COG1191 DNA-directed RNA polymerase specialized sigma subunit; PfamMatches:PF04542.8 YP_006231471.1 'COGmatches:COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; PfamMatches:PF00005.21' YP_006231472.1 COGmatches:COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; PfamMatches:PF07687.8 YP_006231473.1 COGmatches:COG1873 Uncharacterized conserved protein; PfamMatches:PF05239.10 YP_006231475.1 COGmatches:COG1496 Uncharacterized conserved protein; PfamMatches:PF02578.9; TIGRfamMatches:TIGR00726 YP_006231476.1 COGmatches:COG0325 Predicted enzyme with a TIM-barrel fold; PfamMatches:PF01168.14; TIGRfamMatches:TIGR00044 YP_006231477.1 COGmatches:COG1799 Uncharacterized protein conserved in bacteria; PfamMatches:PF04472.6 YP_006231478.1 COGmatches:COG0762 Predicted integral membrane protein; PfamMatches:PF02325.11 YP_006231479.1 'COGmatches:COG2302 Uncharacterized conserved protein, contains S4-like domain; PfamMatches:PF01479.19' YP_006231480.1 COGmatches:COG3599 Cell division initiation protein; PfamMatches:PF05103.7 YP_006231481.1 COGmatches:COG0060 Isoleucyl-tRNA synthetase; PfamMatches:PF00133.16 YP_006231483.1 COGmatches:COG1734 DnaK suppressor protein YP_006231484.1 COGmatches:COG0597 Lipoprotein signal peptidase; PfamMatches:PF01252.12 YP_006231485.1 'COGmatches:COG0564 Pseudouridylate synthases, 23S RNA-specific; PfamMatches:PF00849.16' YP_006231486.1 COGmatches:COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; PfamMatches:PF00156.21 YP_006231487.1 COGmatches:COG2233 Xanthine/uracil permeases; PfamMatches:PF00860.14 YP_006231488.1 'COGmatches:COG0540 Aspartate carbamoyltransferase, catalytic chain; PfamMatches:PF02729.15' YP_006231489.1 COGmatches:COG0044 Dihydroorotase and related cyclic amidohydrolases; PfamMatches:PF01979.14 YP_006231490.1 COGmatches:COG0505 Carbamoylphosphate synthase small subunit; PfamMatches:PF00988.16 YP_006231491.1 COGmatches:COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); PfamMatches:PF02786.11 YP_006231492.1 COGmatches:COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; PfamMatches:PF10418.3 YP_006231493.1 COGmatches:COG0167 Dihydroorotate dehydrogenase; PfamMatches:PF01180.15 YP_006231494.1 COGmatches:COG0284 Orotidine-5'-phosphate decarboxylase; PfamMatches:PF00215.18 YP_006231495.1 COGmatches:COG0461 Orotate phosphoribosyltransferase; PfamMatches:PF00156.21 YP_006231496.1 COGmatches:COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; PfamMatches:PF01507.13 YP_006231497.1 COGmatches:COG0306 Phosphate/sulphate permeases; PfamMatches:PF01384.14 YP_006231498.1 COGmatches:COG2046 ATP sulfurylase (sulfate adenylyltransferase); PfamMatches:PF01747.11 YP_006231499.1 COGmatches:COG0529 Adenylylsulfate kinase and related kinases; PfamMatches:PF01583.14 YP_006231500.1 COGmatches:COG0007 Uroporphyrinogen-III methylase; PfamMatches:PF00590.14 YP_006231501.1 COGmatches:COG2138 Uncharacterized conserved protein; PfamMatches:PF01903.11 YP_006231502.1 COGmatches:COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) YP_006231503.1 COGmatches:COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; PfamMatches:PF05833.5 YP_006231504.1 COGmatches:COG0474 Cation transport ATPase; PfamMatches:PF00122.14 YP_006231505.1 COGmatches:COG1561 Uncharacterized stress-induced protein; PfamMatches:PF03755.7; TIGRfamMatches:TIGR00255 YP_006231506.1 COGmatches:COG2052 Uncharacterized protein conserved in bacteria; PfamMatches:PF04025.6 YP_006231507.1 COGmatches:COG0194 Guanylate kinase; PfamMatches:PF00625.15 YP_006231508.1 'COGmatches:COG1758 DNA-directed RNA polymerase, subunit K/omega; PfamMatches:PF01192.16' YP_006231509.1 COGmatches:COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; PfamMatches:PF04127.9 YP_006231510.1 COGmatches:COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; PfamMatches:PF04851.9 YP_006231511.1 COGmatches:COG0242 N-formylmethionyl-tRNA deformylase; PfamMatches:PF01327.15 YP_006231512.1 COGmatches:COG0223 Methionyl-tRNA formyltransferase; PfamMatches:PF00551.13 YP_006231513.1 COGmatches:COG0144 tRNA and rRNA cytosine-C5-methylases; PfamMatches:PF01189.11 YP_006231514.1 COGmatches:COG0820 Predicted Fe-S-cluster redox enzyme; PfamMatches:PF04055.15; TIGRfamMatches:TIGR00048 YP_006231515.1 COGmatches:COG0631 Serine/threonine protein phosphatase; PfamMatches:PF00481.15 YP_006231516.1 COGmatches:COG0515 Serine/threonine protein kinase; PfamMatches:PF00069.19 YP_006231517.1 COGmatches:COG1162 Predicted GTPases; PfamMatches:PF03193.10; TIGRfamMatches:TIGR00157 YP_006231518.1 COGmatches:COG0036 Pentose-5-phosphate-3-epimerase; PfamMatches:PF00834.13 YP_006231519.1 COGmatches:COG1564 Thiamine pyrophosphokinase; PfamMatches:PF04263.10 YP_006231520.1 PfamMatches:PF08183.5 YP_006231521.1 COGmatches:COG0227 Ribosomal protein L28; PfamMatches:PF00830.13 YP_006231522.1 COGmatches:COG1302 Uncharacterized protein conserved in bacteria; PfamMatches:PF03780.7 YP_006231523.1 COGmatches:COG1461 Predicted kinase related to dihydroxyacetone kinase; PfamMatches:PF02734.11 YP_006231524.1 COGmatches:COG1760 L-serine deaminase; PfamMatches:PF03315.9 YP_006231525.1 COGmatches:COG1760 L-serine deaminase; PfamMatches:PF03313.9 YP_006231526.1 COGmatches:COG1200 RecG-like helicase; PfamMatches:PF00270.23 YP_006231527.1 'COGmatches:COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism' YP_006231528.1 COGmatches:COG0416 Fatty acid/phospholipid biosynthesis enzyme; PfamMatches:PF02504.9 YP_006231529.1 COGmatches:COG0331 (acyl-carrier-protein) S-malonyltransferase; PfamMatches:PF00698.15 YP_006231530.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006231531.1 COGmatches:COG0236 Acyl carrier protein; PfamMatches:PF00550.19 YP_006231532.1 COGmatches:COG0571 dsRNA-specific ribonuclease; PfamMatches:PF00636.20 YP_006231533.1 COGmatches:COG1196 Chromosome segregation ATPases; PfamMatches:PF02463.13 YP_006231534.1 COGmatches:COG0552 Signal recognition particle GTPase; PfamMatches:PF00448.16 YP_006231535.1 COGmatches:COG3173 Predicted aminoglycoside phosphotransferase; PfamMatches:PF01636.17 YP_006231536.1 COGmatches:COG2739 Uncharacterized protein conserved in bacteria; PfamMatches:PF04297.8 YP_006231537.1 COGmatches:COG0541 Signal recognition particle GTPase; PfamMatches:PF00448.16 YP_006231538.1 COGmatches:COG0228 Ribosomal protein S16; PfamMatches:PF00886.13 YP_006231539.1 COGmatches:COG1837 Predicted RNA-binding protein (contains KH domain) YP_006231540.1 PfamMatches:PF11068.2 YP_006231541.1 'COGmatches:COG0806 RimM protein, required for 16S rRNA processing; PfamMatches:PF01782.12' YP_006231542.1 COGmatches:COG0336 tRNA-(guanine-N1)-methyltransferase; PfamMatches:PF01746.15 YP_006231543.1 COGmatches:COG0335 Ribosomal protein L19; PfamMatches:PF01245.14 YP_006231544.1 COGmatches:COG1161 Predicted GTPases; PfamMatches:PF01926.17 YP_006231545.1 COGmatches:COG0164 Ribonuclease HII; PfamMatches:PF01351.12 YP_006231547.1 COGmatches:COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; PfamMatches:PF01312.13 YP_006231548.1 'COGmatches:COG0045 Succinyl-CoA synthetase, beta subunit; PfamMatches:PF08442.4' YP_006231549.1 'COGmatches:COG0074 Succinyl-CoA synthetase, alpha subunit; PfamMatches:PF02629.13' YP_006231550.1 COGmatches:COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; PfamMatches:PF02481.9 YP_006231551.1 COGmatches:COG0550 Topoisomerase IA; PfamMatches:PF01131.14 YP_006231552.1 COGmatches:COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; PfamMatches:PF01134.16 YP_006231553.1 COGmatches:COG4974 Site-specific recombinase XerD; PfamMatches:PF00589.16 YP_006231554.1 'COGmatches:COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; PfamMatches:PF00227.1' YP_006231555.1 'COGmatches:COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; PfamMatches:PF07724.8' YP_006231556.1 COGmatches:COG4465 Pleiotropic transcriptional repressor; PfamMatches:PF06018.8 YP_006231558.1 COGmatches:COG1815 Flagellar basal body protein; PfamMatches:PF00460.14 YP_006231559.1 COGmatches:COG1558 Flagellar basal body rod protein; PfamMatches:PF06429.7 YP_006231560.1 COGmatches:COG1677 Flagellar hook-basal body protein; PfamMatches:PF02049.12 YP_006231561.1 COGmatches:COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; PfamMatches:PF01514.11 YP_006231562.1 COGmatches:COG1536 Flagellar motor switch protein; PfamMatches:PF01706.10 YP_006231563.1 COGmatches:COG1317 Flagellar biosynthesis/type III secretory pathway protein; PfamMatches:PF02108.10 YP_006231564.1 COGmatches:COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; PfamMatches:PF00006.19 YP_006231565.1 COGmatches:COG2882 Flagellar biosynthesis chaperone; PfamMatches:PF02050.10 YP_006231566.1 COGmatches:COG3334 Uncharacterized conserved protein; PfamMatches:PF03448.11 YP_006231567.1 COGmatches:COG3144 Flagellar hook-length control protein; PfamMatches:PF02120.10 YP_006231568.1 COGmatches:COG1843 Flagellar hook capping protein; PfamMatches:PF03963.8 YP_006231569.1 COGmatches:COG4786 Flagellar basal body rod protein; PfamMatches:PF06429.7 YP_006231570.1 'COGmatches:COG1582 Uncharacterized protein, possibly involved in motility; PfamMatches:PF06289.5' YP_006231571.1 COGmatches:COG1580 Flagellar basal body-associated protein; PfamMatches:PF03748.8 YP_006231572.1 COGmatches:COG1868 Flagellar motor switch protein; PfamMatches:PF02154.9 YP_006231573.1 'COGmatches:COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation; PfamMatches:PF04509.6' YP_006231574.1 COGmatches:COG0784 FOG: CheY-like receiver; PfamMatches:PF00072.18 YP_006231575.1 COGmatches:COG3190 Flagellar biogenesis protein; PfamMatches:PF04347.7 YP_006231576.1 'COGmatches:COG1338 Flagellar biosynthesis pathway, component FliP; PfamMatches:PF00813.14' YP_006231577.1 'COGmatches:COG1987 Flagellar biosynthesis pathway, component FliQ; PfamMatches:PF01313.13' YP_006231578.1 'COGmatches:COG1684 Flagellar biosynthesis pathway, component FliR; PfamMatches:PF01311.14' YP_006231579.1 'COGmatches:COG1377 Flagellar biosynthesis pathway, component FlhB; PfamMatches:PF01312.13' YP_006231580.1 'COGmatches:COG1298 Flagellar biosynthesis pathway, component FlhA; PfamMatches:PF00771.14' YP_006231581.1 COGmatches:COG1419 Flagellar GTP-binding protein; PfamMatches:PF00448.16 YP_006231582.1 COGmatches:COG0455 ATPases involved in chromosome partitioning; PfamMatches:PF01656.17 YP_006231583.1 COGmatches:COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; PfamMatches:PF01339.11 YP_006231584.1 COGmatches:COG0643 Chemotaxis protein histidine kinase and related kinases; PfamMatches:PF07194.5 YP_006231585.1 COGmatches:COG0835 Chemotaxis signal transduction protein; PfamMatches:PF01584.13 YP_006231586.1 'COGmatches:COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation; PfamMatches:PF04509.6' YP_006231587.1 COGmatches:COG1871 Chemotaxis protein; stimulates methylation of MCP proteins; PfamMatches:PF03975.7 YP_006231588.1 COGmatches:COG1191 DNA-directed RNA polymerase specialized sigma subunit; PfamMatches:PF04545.10 YP_006231589.1 COGmatches:COG0052 Ribosomal protein S2; PfamMatches:PF00318.14 YP_006231590.1 COGmatches:COG0264 Translation elongation factor Ts; PfamMatches:PF00889.13 YP_006231591.1 COGmatches:COG0528 Uridylate kinase; PfamMatches:PF00696.22 YP_006231592.1 COGmatches:COG0233 Ribosome recycling factor; PfamMatches:PF01765.13 YP_006231593.1 COGmatches:COG0020 Undecaprenyl pyrophosphate synthase; PfamMatches:PF01255.13 YP_006231594.1 COGmatches:COG0575 CDP-diglyceride synthetase; PfamMatches:PF01148.14 YP_006231595.1 COGmatches:COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PfamMatches:PF02670.10 YP_006231596.1 COGmatches:COG0750 Predicted membrane-associated Zn-dependent proteases 1; PfamMatches:PF02163.16; TIGRfamMatches:TIGR00054 YP_006231597.1 COGmatches:COG0442 Prolyl-tRNA synthetase; PfamMatches:PF00587.19 YP_006231598.1 'COGmatches:COG2176 DNA polymerase III, alpha subunit (gram-positive type); PfamMatches:PF07733.6' YP_006231599.1 COGmatches:COG0779 Uncharacterized protein conserved in bacteria; PfamMatches:PF02576.11 YP_006231600.1 COGmatches:COG0195 Transcription elongation factor; PfamMatches:PF08529.5 YP_006231601.1 COGmatches:COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination; PfamMatches:PF04296.7 YP_006231602.1 COGmatches:COG1358 Ribosomal protein HS6-type (S12/L30/L7a); PfamMatches:PF01248.20 YP_006231603.1 COGmatches:COG0532 Translation initiation factor 2 (IF-2; GTPase); PfamMatches:PF00009.21 YP_006231604.1 COGmatches:COG1550 Uncharacterized protein conserved in bacteria; PfamMatches:PF04456.6 YP_006231605.1 COGmatches:COG0858 Ribosome-binding factor A; PfamMatches:PF02033.12 YP_006231606.1 COGmatches:COG0130 Pseudouridine synthase; PfamMatches:PF01509.1 YP_006231607.1 COGmatches:COG0196 FAD synthase; PfamMatches:PF06574.6 YP_006231608.1 COGmatches:COG0184 Ribosomal protein S15P/S13E; PfamMatches:PF00312.16 YP_006231609.1 COGmatches:COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); PfamMatches:PF01138.15 YP_006231610.1 COGmatches:COG0726 Predicted xylanase/chitin deacetylase; PfamMatches:PF01522.15 YP_006231611.1 COGmatches:COG0612 Predicted Zn-dependent peptidases; PfamMatches:PF00675.14 YP_006231612.1 COGmatches:COG1873 Uncharacterized conserved protein; PfamMatches:PF05239.10 YP_006231614.1 PfamMatches:PF02826.13 YP_006231615.1 COGmatches:COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; PfamMatches:PF02441.13 YP_006231616.1 COGmatches:COG0136 Aspartate-semialdehyde dehydrogenase; PfamMatches:PF02774.12 YP_006231617.1 COGmatches:COG0527 Aspartokinases; PfamMatches:PF00696.22 YP_006231618.1 COGmatches:COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PfamMatches:PF00701.16 YP_006231619.1 COGmatches:COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily; PfamMatches:PF00753.21 YP_006231620.1 COGmatches:COG0740 Protease subunit of ATP-dependent Clp proteases; PfamMatches:PF00574.17 YP_006231622.1 COGmatches:COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; PfamMatches:PF01580.12 YP_006231623.1 COGmatches:COG2188 Transcriptional regulators; PfamMatches:PF07702.7 YP_006231624.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006231625.1 COGmatches:COG0612 Predicted Zn-dependent peptidases; PfamMatches:PF05193.15 YP_006231626.1 COGmatches:COG0612 Predicted Zn-dependent peptidases; PfamMatches:PF00675.14 YP_006231627.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006231628.1 PfamMatches:PF11588.2 YP_006231629.1 PfamMatches:PF11868.2 YP_006231630.1 COGmatches:COG1426 Uncharacterized protein conserved in bacteria; PfamMatches:PF12844.1 YP_006231631.1 COGmatches:COG0558 Phosphatidylglycerophosphate synthase; PfamMatches:PF01066.15 YP_006231632.1 COGmatches:COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; PfamMatches:PF02464.11 YP_006231633.1 COGmatches:COG0468 RecA/RadA recombinase; PfamMatches:PF00154.15 YP_006231634.1 COGmatches:COG1680 Beta-lactamase class C and other penicillin binding proteins; PfamMatches:PF00144.18 YP_006231635.1 COGmatches:COG1418 Predicted HD superfamily hydrolase; PfamMatches:PF12072.2 YP_006231636.1 COGmatches:COG1692 Uncharacterized protein conserved in bacteria; PfamMatches:PF00149.22; TIGRfamMatches:TIGR00282 YP_006231637.1 COGmatches:COG2359 Uncharacterized protein conserved in bacteria; PfamMatches:PF04232.6 YP_006231638.1 COGmatches:COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; PfamMatches:PF08240.6 YP_006231639.1 COGmatches:COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; PfamMatches:PF00155.15 YP_006231640.1 COGmatches:COG0621 2-methylthioadenine synthetase; PfamMatches:PF04055.15 YP_006231641.1 COGmatches:COG4550 Predicted membrane protein; PfamMatches:PF06133.5 YP_006231642.1 PfamMatches:PF10628.3 YP_006231643.1 COGmatches:COG0249 Mismatch repair ATPase (MutS family); PfamMatches:PF00488.15 YP_006231644.1 COGmatches:COG0323 DNA mismatch repair enzyme (predicted ATPase); PfamMatches:PF08676.5 YP_006231648.1 PfamMatches:PF09680.4 YP_006231651.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006231652.1 'COGmatches:COG0491 Zn-dependent hydrolases, including glyoxylases; PfamMatches:PF00753.21' YP_006231653.1 COGmatches:COG0331 (acyl-carrier-protein) S-malonyltransferase; PfamMatches:PF00698.15 YP_006231654.1 COGmatches:COG3321 Polyketide synthase modules and related proteins; PfamMatches:PF00698.15 YP_006231655.1 COGmatches:COG2070 Dioxygenases related to 2-nitropropane dioxygenase; PfamMatches:PF00698.15 YP_006231656.1 COGmatches:COG0236 Acyl carrier protein; PfamMatches:PF00550.19 YP_006231657.1 COGmatches:COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; PfamMatches:PF00109.20 YP_006231658.1 COGmatches:COG3425 3-hydroxy-3-methylglutaryl CoA synthase; PfamMatches:PF08540.4 YP_006231659.1 COGmatches:COG1024 Enoyl-CoA hydratase/carnithine racemase; PfamMatches:PF00378.14 YP_006231660.1 COGmatches:COG1024 Enoyl-CoA hydratase/carnithine racemase; PfamMatches:PF00378.14 YP_006231661.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00109.20 YP_006231662.1 COGmatches:COG3321 Polyketide synthase modules and related proteins; PfamMatches:PF00109.20 YP_006231663.1 COGmatches:COG3321 Polyketide synthase modules and related proteins; PfamMatches:PF00109.20 YP_006231664.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; NOTE=COGmatches:COG3321 Polyketide synthase modules and related proteins; PfamMatches:PF00109.20 YP_006231665.1 COGmatches:COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases; PfamMatches:PF00109.20 YP_006231666.1 COGmatches:COG2124 Cytochrome P450; PfamMatches:PF00067.16 YP_006231669.1 COGmatches:COG1404 Subtilisin-like serine proteases; PfamMatches:PF00082.16 YP_006231671.1 COGmatches:COG4195 Phage-related replication protein; PfamMatches:PF05908.5 YP_006231672.1 'COGmatches:COG1764 Predicted redox protein, regulator of disulfide bond formation; PfamMatches:PF02566.13' YP_006231673.1 COGmatches:COG2076 Membrane transporters of cations and cationic drugs; PfamMatches:PF00893.13 YP_006231674.1 COGmatches:COG2076 Membrane transporters of cations and cationic drugs; PfamMatches:PF00893.13 YP_006231677.1 COGmatches:COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; PfamMatches:PF01715.11 YP_006231678.1 COGmatches:COG1923 Uncharacterized host factor I protein; PfamMatches:PF01423.16 YP_006231681.1 COGmatches:COG1780 Protein involved in ribonucleotide reduction; PfamMatches:PF07972.5 YP_006231682.1 'COGmatches:COG0209 Ribonucleotide reductase, alpha subunit; PfamMatches:PF02867.1' YP_006231683.1 'COGmatches:COG0208 Ribonucleotide reductase, beta subunit; PfamMatches:PF00268.15' YP_006231684.1 COGmatches:COG4112 Predicted phosphoesterase (MutT family) YP_006231685.1 COGmatches:COG0860 N-acetylmuramoyl-L-alanine amidase; PfamMatches:PF01520.12 YP_006231689.1 COGmatches:COG0464 ATPases of the AAA+ class; PfamMatches:PF00004.23 YP_006231690.1 COGmatches:COG2262 GTPases; PfamMatches:PF01926.17 YP_006231691.1 COGmatches:COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance; PfamMatches:PF06838.5 YP_006231692.1 COGmatches:COG0789 Predicted transcriptional regulators; PfamMatches:PF00376.17 YP_006231693.1 COGmatches:COG0174 Glutamine synthetase; PfamMatches:PF00120.18 YP_006231696.1 COGmatches:COG5444 Uncharacterized conserved protein; PfamMatches:PF04740.6 YP_006231698.1 PfamMatches:PF09346.4 YP_006231699.1 COGmatches:COG5444 Uncharacterized conserved protein YP_006231700.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF07719.11 YP_006231701.1 'COGmatches:COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; PfamMatches:PF00583.18' YP_006231705.1 COGmatches:COG2211 Na+/melibiose symporter and related transporters; PfamMatches:PF07690.10 YP_006231706.1 COGmatches:COG3507 Beta-xylosidase; PfamMatches:PF04616.8 YP_006231707.1 COGmatches:COG1940 Transcriptional regulator/sugar kinase; PfamMatches:PF00480.14 YP_006231708.1 COGmatches:COG2115 Xylose isomerase; PfamMatches:PF01261.18 YP_006231709.1 COGmatches:COG1070 Sugar (pentulose and hexulose) kinases; PfamMatches:PF00370.15 YP_006231710.1 PfamMatches:PF00457.11 YP_006231711.1 COGmatches:COG1525 Micrococcal nuclease (thermonuclease) homologs; PfamMatches:PF00565.11 YP_006231712.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF00083.18 YP_006231713.1 COGmatches:COG0787 Alanine racemase; PfamMatches:PF01168.14 YP_006231715.1 PfamMatches:PF10903.2 YP_006231716.1 COGmatches:COG0756 dUTPase; PfamMatches:PF00692.13 YP_006231717.1 PfamMatches:PF04892.6 YP_006231719.1 COGmatches:COG0207 Thymidylate synthase; PfamMatches:PF00303.13 YP_006231726.1 COGmatches:COG1826 Sec-independent protein secretion pathway components; PfamMatches:PF02416.10 YP_006231728.1 COGmatches:COG3832 Uncharacterized conserved protein; PfamMatches:PF08327.5 YP_006231730.1 PfamMatches:PF03323.7 YP_006231731.1 PfamMatches:PF03845.7 YP_006231732.1 PfamMatches:PF05504.5 YP_006231737.1 COGmatches:COG4195 Phage-related replication protein; PfamMatches:PF05908.5 YP_006231738.1 PfamMatches:PF10710.3 YP_006231739.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF00903.19 YP_006231741.1 COGmatches:COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); PfamMatches:PF01726.10 YP_006231742.1 COGmatches:COG1388 FOG: LysM repeat; PfamMatches:PF01476.14 YP_006231743.1 'COGmatches:COG1961 Site-specific recombinases, DNA invertase Pin homologs; PfamMatches:PF00239.15' YP_006231744.1 COGmatches:COG4224 Uncharacterized protein conserved in bacteria; PfamMatches:PF05979.6 YP_006231745.1 COGmatches:COG0021 Transketolase; PfamMatches:PF00456.15 YP_006231746.1 PfamMatches:PF10747.3 YP_006231747.1 COGmatches:COG3763 Uncharacterized protein conserved in bacteria; PfamMatches:PF03672.7 YP_006231748.1 PfamMatches:PF09388.4 YP_006231749.1 COGmatches:COG0785 Cytochrome c biogenesis protein; PfamMatches:PF02683.9 YP_006231750.1 COGmatches:COG0784 FOG: CheY-like receiver; PfamMatches:PF00072.18 YP_006231751.1 COGmatches:COG4846 Membrane protein involved in cytochrome C biogenesis; PfamMatches:PF07301.5 YP_006231752.1 PfamMatches:PF11084.2 YP_006231753.1 COGmatches:COG0071 Molecular chaperone (small heat shock protein) YP_006231754.1 PfamMatches:PF08179.6 YP_006231755.1 PfamMatches:PF08175.6 YP_006231756.1 COGmatches:COG1048 Aconitase A; PfamMatches:PF00330.14 YP_006231757.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00578.15 YP_006231759.1 PfamMatches:PF08177.5 YP_006231761.1 COGmatches:COG0824 Predicted thioesterase; PfamMatches:PF03061.16; TIGRfamMatches:TIGR00051 YP_006231763.1 COGmatches:COG4841 Uncharacterized protein conserved in bacteria; PfamMatches:PF01521.14 YP_006231764.1 COGmatches:COG0344 Predicted membrane protein; PfamMatches:PF02660.9; TIGRfamMatches:TIGR00023 YP_006231765.1 COGmatches:COG1832 Predicted CoA-binding protein YP_006231766.1 'COGmatches:COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; PfamMatches:PF00204.19' YP_006231767.1 'COGmatches:COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; PfamMatches:PF00521.1' YP_006231770.1 COGmatches:COG1115 Na+/alanine symporter; PfamMatches:PF01235.11 YP_006231771.1 COGmatches:COG2730 Endoglucanase; PfamMatches:PF00150.12 YP_006231773.1 COGmatches:COG5520 O-Glycosyl hydrolase; PfamMatches:PF02055.10 YP_006231774.1 PfamMatches:PF03422.9 YP_006231775.1 COGmatches:COG2246 Predicted membrane protein; PfamMatches:PF04138.8 YP_006231776.1 COGmatches:COG1210 UDP-glucose pyrophosphorylase; PfamMatches:PF00483.17 YP_006231777.1 COGmatches:COG0586 Uncharacterized membrane-associated protein; PfamMatches:PF09335.5 YP_006231778.1 COGmatches:COG2404 Predicted phosphohydrolase (DHH superfamily); PfamMatches:PF02272.13 YP_006231779.1 'COGmatches:COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PfamMatches:PF01039.16' YP_006231780.1 COGmatches:COG1024 Enoyl-CoA hydratase/carnithine racemase; PfamMatches:PF00378.14 YP_006231781.1 COGmatches:COG0119 Isopropylmalate/homocitrate/citramalate synthases; PfamMatches:PF00682.13 YP_006231782.1 COGmatches:COG0511 Biotin carboxyl carrier protein; PfamMatches:PF00364.16 YP_006231783.1 COGmatches:COG0439 Biotin carboxylase; PfamMatches:PF02786.11 YP_006231784.1 COGmatches:COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PfamMatches:PF00501.22 YP_006231785.1 COGmatches:COG1960 Acyl-CoA dehydrogenases; PfamMatches:PF00441.1 YP_006231788.1 COGmatches:COG1649 Uncharacterized protein conserved in bacteria; PfamMatches:PF02638.9 YP_006231789.1 PfamMatches:PF07098.5 YP_006231790.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00501.22 YP_006231791.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00501.22 YP_006231792.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00668.14 YP_006231793.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00668.14 YP_006231794.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00668.14 YP_006231795.1 COGmatches:COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); PfamMatches:PF02113.9 YP_006231796.1 COGmatches:COG2017 Galactose mutarotase and related enzymes; PfamMatches:PF01263.1 YP_006231797.1 COGmatches:COG0534 Na+-driven multidrug efflux pump; PfamMatches:PF01554.12 YP_006231800.1 COGmatches:COG0582 Integrase; PfamMatches:PF00589.16 YP_006231801.1 PfamMatches:PF12728.1 YP_006231802.1 COGmatches:COG0405 Gamma-glutamyltransferase; PfamMatches:PF01019.15 YP_006231803.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006231804.1 COGmatches:COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; PfamMatches:PF00107.20 YP_006231805.1 COGmatches:COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; PfamMatches:PF07992.8 YP_006231806.1 COGmatches:COG0069 Glutamate synthase domain 2; NOTE=COGmatches:COG0070 Glutamate synthase domain 3; NOTE=COGmatches:COG0067 Glutamate synthase domain 1; PfamMatches:PF01645.11 YP_006231807.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006231808.1 COGmatches:COG0263 Glutamate 5-kinase; PfamMatches:PF00696.22 YP_006231809.1 COGmatches:COG0345 Pyrroline-5-carboxylate reductase; PfamMatches:PF03807.11 YP_006231810.1 PfamMatches:PF02334.10 YP_006231811.1 COGmatches:COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain; PfamMatches:PF06103.5 YP_006231813.1 'COGmatches:COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; PfamMatches:PF00583.18' YP_006231814.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006231815.1 COGmatches:COG1070 Sugar (pentulose and hexulose) kinases; PfamMatches:PF00370.15 YP_006231816.1 COGmatches:COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; PfamMatches:PF02826.13 YP_006231817.1 'COGmatches:COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; PfamMatches:PF00384.16' YP_006231824.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006231825.1 COGmatches:COG2368 Aromatic ring hydroxylase; PfamMatches:PF11794.2 YP_006231826.1 COGmatches:COG4305 Endoglucanase C-terminal domain/subunit and related proteins; PfamMatches:PF03330.12 YP_006231827.1 COGmatches:COG3619 Predicted membrane protein; PfamMatches:PF06912.5 YP_006231828.1 COGmatches:COG3866 Pectate lyase; PfamMatches:PF00544.13 YP_006231830.1 COGmatches:COG2135 Uncharacterized conserved protein; PfamMatches:PF02586.8 YP_006231832.1 COGmatches:COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes; PfamMatches:PF00190.16 YP_006231834.1 PfamMatches:PF00583.18 YP_006231837.1 COGmatches:COG2720 Uncharacterized vancomycin resistance protein; PfamMatches:PF04294.7 YP_006231838.1 PfamMatches:PF11234.2 YP_006231839.1 COGmatches:COG3655 Predicted transcriptional regulator; PfamMatches:PF01381.16 YP_006231840.1 COGmatches:COG3739 Uncharacterized integral membrane protein; PfamMatches:PF05675.6 YP_006231841.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006231842.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006231845.1 PfamMatches:PF11518.2 YP_006231848.1 COGmatches:COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; PfamMatches:PF01326.13 YP_006231849.1 PfamMatches:PF09346.4 YP_006231850.1 COGmatches:COG1231 Monoamine oxidase; PfamMatches:PF01593.18 YP_006231855.1 PfamMatches:PF02517.10 YP_006231857.1 PfamMatches:PF00457.11 YP_006231858.1 COGmatches:COG1793 ATP-dependent DNA ligase YP_006231861.1 COGmatches:COG1757 Na+/H+ antiporter; PfamMatches:PF03553.8 YP_006231864.1 PfamMatches:PF09636.4 YP_006231870.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006231871.1 COGmatches:COG1733 Predicted transcriptional regulators; PfamMatches:PF01638.11 YP_006231874.1 COGmatches:COG0073 EMAP domain; PfamMatches:PF01588.14 YP_006231875.1 COGmatches:COG2207 AraC-type DNA-binding domain-containing proteins; PfamMatches:PF12833.1 YP_006231876.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006231877.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006231878.1 'COGmatches:COG0491 Zn-dependent hydrolases, including glyoxylases; PfamMatches:PF00753.21' YP_006231879.1 COGmatches:COG3708 Uncharacterized protein conserved in bacteria; PfamMatches:PF06445.9 YP_006231880.1 COGmatches:COG2378 Predicted transcriptional regulator; PfamMatches:PF08279.6 YP_006231882.1 COGmatches:COG0640 Predicted transcriptional regulators; PfamMatches:PF01022.14 YP_006231883.1 COGmatches:COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_006231884.1 COGmatches:COG2322 Predicted membrane protein; PfamMatches:PF04238.6 YP_006231885.1 PfamMatches:PF10116.3 YP_006231887.1 'COGmatches:COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; PfamMatches:PF02016.9' YP_006231888.1 COGmatches:COG3239 Fatty acid desaturase; PfamMatches:PF00487.18 YP_006231889.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF07730.7 YP_006231890.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006231892.1 COGmatches:COG3584 Uncharacterized protein conserved in bacteria; PfamMatches:PF01476.14 YP_006231893.1 COGmatches:COG0514 Superfamily II DNA helicase; PfamMatches:PF09382.4 YP_006231894.1 COGmatches:COG1182 Acyl carrier protein phosphodiesterase; PfamMatches:PF02525.11 YP_006231895.1 COGmatches:COG1734 DnaK suppressor protein; PfamMatches:PF01258.11 YP_006231898.1 COGmatches:COG0071 Molecular chaperone (small heat shock protein); PfamMatches:PF00011.15 YP_006231901.1 PfamMatches:PF08000.5 YP_006231903.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006231904.1 COGmatches:COG1657 Squalene cyclase; PfamMatches:PF00432.15 YP_006231905.1 COGmatches:COG0605 Superoxide dismutase; PfamMatches:PF02777.12 YP_006231906.1 COGmatches:COG0733 Na+-dependent transporters of the SNF family; PfamMatches:PF00209.12 YP_006231907.1 COGmatches:COG0385 Predicted Na+-dependent transporter; PfamMatches:PF01758.10 YP_006231908.1 'COGmatches:COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; PfamMatches:PF00198.17' YP_006231909.1 'COGmatches:COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes; PfamMatches:PF00676.14' YP_006231910.1 COGmatches:COG4548 Nitric oxide reductase activation protein YP_006231911.1 COGmatches:COG0714 MoxR-like ATPases; PfamMatches:PF07728.8 YP_006231912.1 COGmatches:COG2032 Cu/Zn superoxide dismutase; PfamMatches:PF00080.14 YP_006231913.1 COGmatches:COG1388 FOG: LysM repeat; PfamMatches:PF01476.14 YP_006231915.1 'COGmatches:COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase; PfamMatches:PF00201.12' YP_006231916.1 COGmatches:COG1624 Uncharacterized conserved protein; PfamMatches:PF02457.10 YP_006231917.1 COGmatches:COG0534 Na+-driven multidrug efflux pump; PfamMatches:PF01554.12 YP_006231918.1 PfamMatches:PF01740.15 YP_006231919.1 'COGmatches:COG2120 Uncharacterized proteins, LmbE homologs; PfamMatches:PF02585.11' YP_006231920.1 PfamMatches:PF08830.4 YP_006231922.1 COGmatches:COG2962 Predicted permeases; PfamMatches:PF00892.14 YP_006231925.1 COGmatches:COG2610 H+/gluconate symporter and related permeases; PfamMatches:PF02447.10 YP_006231927.1 PfamMatches:PF01361.1 YP_006231928.1 COGmatches:COG1733 Predicted transcriptional regulators; PfamMatches:PF01638.11 YP_006231929.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006231930.1 COGmatches:COG0400 Predicted esterase; PfamMatches:PF02230.10 YP_006231931.1 PfamMatches:PF11755.2 YP_006231932.1 COGmatches:COG0591 Na+/proline symporter; PfamMatches:PF00474.11 YP_006231933.1 COGmatches:COG0793 Periplasmic protease; PfamMatches:PF03572.1 YP_006231934.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF08241.6 YP_006231936.1 COGmatches:COG1876 D-alanyl-D-alanine carboxypeptidase; PfamMatches:PF02557.11 YP_006231937.1 COGmatches:COG0813 Purine-nucleoside phosphorylase; PfamMatches:PF01048.14 YP_006231944.1 COGmatches:COG4479 Uncharacterized protein conserved in bacteria; PfamMatches:PF06855.6 YP_006231946.1 'COGmatches:COG1509 Lysine 2,3-aminomutase; PfamMatches:PF12544.2' YP_006231947.1 PfamMatches:PF00583.18 YP_006231948.1 COGmatches:COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; PfamMatches:PF01546.22 YP_006231949.1 'COGmatches:COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; PfamMatches:PF01144.17' YP_006231950.1 'COGmatches:COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; PfamMatches:PF01144.17' YP_006231951.1 COGmatches:COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PfamMatches:PF00202.15 YP_006231953.1 PfamMatches:PF09680.4 YP_006231954.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006231955.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006231958.1 COGmatches:COG4641 Uncharacterized protein conserved in bacteria YP_006231959.1 COGmatches:COG4247 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase); PfamMatches:PF02333.9 YP_006231960.1 COGmatches:COG1086 Predicted nucleoside-diphosphate sugar epimerases; PfamMatches:PF02719.9 YP_006231961.1 COGmatches:COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; PfamMatches:PF01641.1; TIGRfamMatches:TIGR00357 YP_006231962.1 COGmatches:COG0225 Peptide methionine sulfoxide reductase; PfamMatches:PF01625.1 YP_006231963.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006231964.1 COGmatches:COG0534 Na+-driven multidrug efflux pump; PfamMatches:PF01554.12 YP_006231966.1 COGmatches:COG4698 Uncharacterized protein conserved in bacteria; PfamMatches:PF09911.3 YP_006231967.1 COGmatches:COG2755 Lysophospholipase L1 and related esterases; PfamMatches:PF00657.1 YP_006231968.1 'COGmatches:COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems; PfamMatches:PF02630.8' YP_006231969.1 PfamMatches:PF10751.3 YP_006231970.1 COGmatches:COG1171 Threonine dehydratase; PfamMatches:PF00291.19 YP_006231971.1 COGmatches:COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; PfamMatches:PF00158.20 YP_006231972.1 'COGmatches:COG1272 Predicted membrane protein, hemolysin III homolog; PfamMatches:PF03006.14' YP_006231974.1 COGmatches:COG0262 Dihydrofolate reductase; PfamMatches:PF00186.13 YP_006231975.1 COGmatches:COG1267 Phosphatidylglycerophosphatase A and related proteins; PfamMatches:PF04608.7 YP_006231976.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF04445.7 YP_006231977.1 PfamMatches:PF06491.5 YP_006231978.1 COGmatches:COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; PfamMatches:PF00920.15 YP_006231979.1 PfamMatches:PF08712.5 YP_006231980.1 COGmatches:COG1418 Predicted HD superfamily hydrolase; PfamMatches:PF01966.16 YP_006231981.1 COGmatches:COG0386 Glutathione peroxidase; PfamMatches:PF00255.13 YP_006231982.1 COGmatches:COG1897 Homoserine trans-succinylase; PfamMatches:PF04204.10 YP_006231984.1 COGmatches:COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; PfamMatches:PF06925.5 YP_006231985.1 COGmatches:COG1278 Cold shock proteins; PfamMatches:PF00313.16 YP_006231987.1 PfamMatches:PF10819.2 YP_006231988.1 PfamMatches:PF10782.3 YP_006231989.1 PfamMatches:PF00075.18 YP_006231990.1 COGmatches:COG1738 Uncharacterized conserved protein; PfamMatches:PF02592.9; TIGRfamMatches:TIGR00697 YP_006231991.1 COGmatches:COG0328 Ribonuclease HI; PfamMatches:PF00075.18 YP_006231993.1 COGmatches:COG0258 5'-3' exonuclease (including N-terminal domain of PolI); PfamMatches:PF02739.10 YP_006231995.1 PfamMatches:PF10752.3 YP_006231996.1 PfamMatches:PF00350.17 YP_006231997.1 COGmatches:COG1755 Uncharacterized protein conserved in bacteria; PfamMatches:PF04140.8 YP_006231998.1 COGmatches:COG3424 Predicted naringenin-chalcone synthase; PfamMatches:PF00195.1 YP_006231999.1 COGmatches:COG2233 Xanthine/uracil permeases; PfamMatches:PF00860.14 YP_006232000.1 COGmatches:COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; PfamMatches:PF00156.21 YP_006232001.1 COGmatches:COG2317 Zn-dependent carboxypeptidase; PfamMatches:PF02074.9 YP_006232002.1 PfamMatches:PF03812.7 YP_006232003.1 COGmatches:COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; PfamMatches:PF01081.13 YP_006232004.1 'COGmatches:COG0524 Sugar kinases, ribokinase family; PfamMatches:PF00294.18' YP_006232005.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00532.15 YP_006232006.1 COGmatches:COG3717 5-keto 4-deoxyuronate isomerase; PfamMatches:PF04962.6 YP_006232007.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006232008.1 COGmatches:COG1199 Rad3-related DNA helicases YP_006232010.1 COGmatches:COG0116 Predicted N6-adenine-specific DNA methylase; PfamMatches:PF01170.12 YP_006232011.1 COGmatches:COG3599 Cell division initiation protein; PfamMatches:PF05103.7 YP_006232012.1 COGmatches:COG4474 Uncharacterized protein conserved in bacteria; PfamMatches:PF06908.5 YP_006232013.1 PfamMatches:PF11122.2 YP_006232015.1 COGmatches:COG3359 Predicted exonuclease YP_006232016.1 COGmatches:COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; PfamMatches:PF00270.23 YP_006232017.1 COGmatches:COG2190 Phosphotransferase system IIA components; PfamMatches:PF00358.14 YP_006232021.1 PfamMatches:PF08807.4 YP_006232024.1 PfamMatches:PF10720.3 YP_006232025.1 'COGmatches:COG3331 Penicillin-binding protein-related factor A, putative recombinase; PfamMatches:PF03838.8' YP_006232026.1 COGmatches:COG0744 Membrane carboxypeptidase (penicillin-binding protein); PfamMatches:PF00912.16 YP_006232028.1 COGmatches:COG0177 Predicted EndoIII-related endonuclease; PfamMatches:PF00730.1 YP_006232029.1 COGmatches:COG3935 Putative primosome component and related proteins; PfamMatches:PF07261.5 YP_006232030.1 COGmatches:COG0017 Aspartyl/asparaginyl-tRNA synthetases; PfamMatches:PF00152.14 YP_006232031.1 COGmatches:COG0436 Aspartate/tyrosine/aromatic aminotransferase; PfamMatches:PF00155.15 YP_006232032.1 COGmatches:COG5353 Uncharacterized protein conserved in bacteria; PfamMatches:PF03413.13 YP_006232034.1 COGmatches:COG1199 Rad3-related DNA helicases; PfamMatches:PF00929.18 YP_006232035.1 COGmatches:COG0853 Aspartate 1-decarboxylase; PfamMatches:PF02261.1 YP_006232036.1 COGmatches:COG0414 Panthothenate synthetase; PfamMatches:PF02569.1 YP_006232037.1 COGmatches:COG0413 Ketopantoate hydroxymethyltransferase; PfamMatches:PF02548.9 YP_006232038.1 COGmatches:COG0340 Biotin-(acetyl-CoA carboxylase) ligase; PfamMatches:PF03099.13 YP_006232039.1 COGmatches:COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; PfamMatches:PF01743.14 YP_006232040.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006232041.1 'COGmatches:COG2120 Uncharacterized proteins, LmbE homologs; PfamMatches:PF02585.11' YP_006232042.1 COGmatches:COG1803 Methylglyoxal synthase; PfamMatches:PF02142.16 YP_006232043.1 COGmatches:COG0289 Dihydrodipicolinate reductase; PfamMatches:PF05173.8 YP_006232044.1 COGmatches:COG1694 Predicted pyrophosphatase; PfamMatches:PF03819.11 YP_006232045.1 COGmatches:COG1284 Uncharacterized conserved protein; PfamMatches:PF02588.9 YP_006232046.1 PfamMatches:PF09577.4 YP_006232047.1 COGmatches:COG4347 Predicted membrane protein; PfamMatches:PF07187.5 YP_006232048.1 'COGmatches:COG2010 Cytochrome c, mono- and diheme variants; PfamMatches:PF00032.11' YP_006232049.1 COGmatches:COG1290 Cytochrome b subunit of the bc complex; PfamMatches:PF00033.13 YP_006232050.1 COGmatches:COG0723 Rieske Fe-S protein; PfamMatches:PF00355.20 YP_006232051.1 PfamMatches:PF10673.3 YP_006232052.1 COGmatches:COG5582 Uncharacterized conserved protein; PfamMatches:PF08864.4 YP_006232053.1 COGmatches:COG0457 FOG: TPR repeat YP_006232055.1 COGmatches:COG0128 5-enolpyruvylshikimate-3-phosphate synthase; PfamMatches:PF00275.14 YP_006232056.1 COGmatches:COG0287 Prephenate dehydrogenase; PfamMatches:PF02153.11 YP_006232057.1 COGmatches:COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; PfamMatches:PF00155.15 YP_006232058.1 COGmatches:COG0159 Tryptophan synthase alpha chain; PfamMatches:PF00290.14 YP_006232059.1 COGmatches:COG0133 Tryptophan synthase beta chain; PfamMatches:PF00291.19 YP_006232060.1 COGmatches:COG0135 Phosphoribosylanthranilate isomerase; PfamMatches:PF00697.16 YP_006232061.1 COGmatches:COG0134 Indole-3-glycerol phosphate synthase; PfamMatches:PF00218.15 YP_006232062.1 COGmatches:COG0547 Anthranilate phosphoribosyltransferase; PfamMatches:PF00591.15 YP_006232063.1 COGmatches:COG0147 Anthranilate/para-aminobenzoate synthases component I; PfamMatches:PF00425.12 YP_006232064.1 COGmatches:COG4401 Chorismate mutase; PfamMatches:PF07736.5 YP_006232065.1 COGmatches:COG0337 3-dehydroquinate synthetase; PfamMatches:PF01761.1 YP_006232066.1 COGmatches:COG0082 Chorismate synthase; PfamMatches:PF01264.15 YP_006232067.1 COGmatches:COG1352 Methylase of chemotaxis methyl-accepting proteins; PfamMatches:PF01739.12 YP_006232069.1 COGmatches:COG0105 Nucleoside diphosphate kinase; PfamMatches:PF00334.13 YP_006232070.1 COGmatches:COG0142 Geranylgeranyl pyrophosphate synthase; PfamMatches:PF00348.11 YP_006232071.1 COGmatches:COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; PfamMatches:PF01209.12 YP_006232072.1 PfamMatches:PF07307.5 YP_006232073.1 PfamMatches:PF02081.9 YP_006232074.1 COGmatches:COG0302 GTP cyclohydrolase I; PfamMatches:PF01227.16 YP_006232075.1 COGmatches:COG0776 Bacterial nucleoid DNA-binding protein; PfamMatches:PF00216.15 YP_006232077.1 PfamMatches:PF09547.4 YP_006232079.1 PfamMatches:PF10966.2 YP_006232080.1 COGmatches:COG0240 Glycerol-3-phosphate dehydrogenase; PfamMatches:PF01210.17 YP_006232081.1 COGmatches:COG1160 Predicted GTPases; PfamMatches:PF01926.17 YP_006232086.1 COGmatches:COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; PfamMatches:PF01070.12 YP_006232087.1 COGmatches:COG0539 Ribosomal protein S1; PfamMatches:PF00575.17 YP_006232088.1 COGmatches:COG0283 Cytidylate kinase; PfamMatches:PF02224.12 YP_006232090.1 COGmatches:COG5581 Predicted glycosyltransferase; PfamMatches:PF12945.1 YP_006232092.1 COGmatches:COG3773 Cell wall hydrolyses involved in spore germination; PfamMatches:PF07486.6 YP_006232093.1 COGmatches:COG2339 Predicted membrane protein YP_006232094.1 COGmatches:COG0492 Thioredoxin reductase; PfamMatches:PF07992.8 YP_006232095.1 COGmatches:COG0334 Glutamate dehydrogenase/leucine dehydrogenase; PfamMatches:PF00208.15 YP_006232097.1 'COGmatches:COG4862 Negative regulator of genetic competence, sporulation and motility; PfamMatches:PF05389.6' YP_006232098.1 COGmatches:COG1408 Predicted phosphohydrolases; PfamMatches:PF00149.22 YP_006232099.1 PfamMatches:PF10864.2 YP_006232100.1 PfamMatches:PF01476.14 YP_006232101.1 COGmatches:COG1266 Predicted metal-dependent membrane protease; PfamMatches:PF02517.10 YP_006232102.1 COGmatches:COG0514 Superfamily II DNA helicase; PfamMatches:PF00270.23 YP_006232103.1 COGmatches:COG4955 Uncharacterized protein conserved in bacteria YP_006232104.1 COGmatches:COG1141 Ferredoxin YP_006232105.1 COGmatches:COG3601 Predicted membrane protein; PfamMatches:PF12822.1 YP_006232108.1 COGmatches:COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; PfamMatches:PF02826.13 YP_006232109.1 COGmatches:COG0710 3-dehydroquinate dehydratase; PfamMatches:PF01487.9 YP_006232111.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF04542.8' YP_006232112.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006232113.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006232114.1 'COGmatches:COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; PfamMatches:PF01578.14' YP_006232115.1 COGmatches:COG1333 ResB protein required for cytochrome c biosynthesis; PfamMatches:PF05140.8 YP_006232116.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00578.15 YP_006232118.1 COGmatches:COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; PfamMatches:PF00849.16; TIGRfamMatches:TIGR00093 YP_006232119.1 COGmatches:COG0700 Uncharacterized membrane protein; PfamMatches:PF07670.8 YP_006232120.1 'COGmatches:COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis.; PfamMatches:PF07670.8' YP_006232121.1 COGmatches:COG1686 D-alanyl-D-alanine carboxypeptidase; PfamMatches:PF00768.14 YP_006232123.1 COGmatches:COG1386 Predicted transcriptional regulator containing the HTH domain; PfamMatches:PF04079.10; TIGRfamMatches:TIGR00281 YP_006232124.1 COGmatches:COG1354 Uncharacterized conserved protein; PfamMatches:PF02616.8 YP_006232125.1 COGmatches:COG1547 Uncharacterized conserved protein; PfamMatches:PF03745.8 YP_006232126.1 PfamMatches:PF00583.18 YP_006232127.1 COGmatches:COG0054 Riboflavin synthase beta-chain; PfamMatches:PF00885.13 YP_006232128.1 COGmatches:COG0807 GTP cyclohydrolase II; PfamMatches:PF00926.13 YP_006232129.1 COGmatches:COG0307 Riboflavin synthase alpha chain; PfamMatches:PF00677.11 YP_006232130.1 'COGmatches:COG1985 Pyrimidine reductase, riboflavin biosynthesis; PfamMatches:PF01872.11' YP_006232133.1 COGmatches:COG0681 Signal peptidase I; PfamMatches:PF00717.17 YP_006232135.1 COGmatches:COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; PfamMatches:PF09855.3 YP_006232136.1 PfamMatches:PF09335.5 YP_006232138.1 PfamMatches:PF10676.3 YP_006232139.1 COGmatches:COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PfamMatches:PF00160.15 YP_006232140.1 COGmatches:COG4086 Predicted secreted protein; PfamMatches:PF06207.5 YP_006232141.1 COGmatches:COG0019 Diaminopimelate decarboxylase; PfamMatches:PF02784.10 YP_006232142.1 PfamMatches:PF03323.7 YP_006232144.1 PfamMatches:PF03862.7 YP_006232145.1 PfamMatches:PF07451.5 YP_006232146.1 PfamMatches:PF03862.7 YP_006232148.1 PfamMatches:PF12164.2 YP_006232149.1 COGmatches:COG1191 DNA-directed RNA polymerase specialized sigma subunit; PfamMatches:PF04542.8 YP_006232150.1 COGmatches:COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); PfamMatches:PF02518.20 YP_006232151.1 COGmatches:COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PfamMatches:PF01740.15 YP_006232152.1 COGmatches:COG1686 D-alanyl-D-alanine carboxypeptidase; PfamMatches:PF00768.14 YP_006232153.1 COGmatches:COG0005 Purine nucleoside phosphorylase; PfamMatches:PF01048.14 YP_006232154.1 COGmatches:COG1015 Phosphopentomutase; PfamMatches:PF01676.12 YP_006232155.1 COGmatches:COG4974 Site-specific recombinase XerD; PfamMatches:PF00589.16 YP_006232157.1 COGmatches:COG0735 Fe2+/Zn2+ uptake regulation proteins; PfamMatches:PF01475.13 YP_006232158.1 COGmatches:COG1300 Uncharacterized membrane protein; PfamMatches:PF01944.11 YP_006232160.1 COGmatches:COG0281 Malic enzyme; PfamMatches:PF03949.9 YP_006232161.1 COGmatches:COG1757 Na+/H+ antiporter; PfamMatches:PF03553.8 YP_006232162.1 COGmatches:COG1027 Aspartate ammonia-lyase; PfamMatches:PF00206.1 YP_006232163.1 COGmatches:COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; PfamMatches:PF00710.14 YP_006232164.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF01381.16 YP_006232165.1 COGmatches:COG1379 Uncharacterized conserved protein; TIGRfamMatches:TIGR00375 YP_006232166.1 COGmatches:COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; PfamMatches:PF00293.1; TIGRfamMatches:TIGR00052 YP_006232168.1 COGmatches:COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); PfamMatches:PF00248.15 YP_006232170.1 COGmatches:COG1073 Hydrolases of the alpha/beta superfamily; PfamMatches:PF12695.1 YP_006232171.1 PfamMatches:PF10827.2 YP_006232172.1 COGmatches:COG4918 Uncharacterized protein conserved in bacteria; PfamMatches:PF01521.14 YP_006232173.1 COGmatches:COG2320 Uncharacterized conserved protein; PfamMatches:PF04229.8 YP_006232174.1 COGmatches:COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides; PfamMatches:PF03992.10 YP_006232175.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006232176.1 PfamMatches:PF08863.4 YP_006232177.1 COGmatches:COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; PfamMatches:PF00817.14 YP_006232180.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232182.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF00903.19 YP_006232183.1 COGmatches:COG1072 Panthothenate kinase; PfamMatches:PF00485.12 YP_006232184.1 COGmatches:COG3048 D-serine dehydratase; PfamMatches:PF00291.19 YP_006232185.1 COGmatches:COG0300 Short-chain dehydrogenases of various substrate specificities; PfamMatches:PF00106.19 YP_006232186.1 'COGmatches:COG0491 Zn-dependent hydrolases, including glyoxylases; PfamMatches:PF00753.21' YP_006232187.1 COGmatches:COG0345 Pyrroline-5-carboxylate reductase; PfamMatches:PF03807.11 YP_006232188.1 COGmatches:COG4187 Arginine degradation protein (predicted deacylase); PfamMatches:PF01546.22 YP_006232189.1 'COGmatches:COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; PfamMatches:PF00724.14' YP_006232190.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006232191.1 COGmatches:COG0267 Ribosomal protein L33; PfamMatches:PF00471.14 YP_006232192.1 COGmatches:COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; PfamMatches:PF12706.1 YP_006232193.1 COGmatches:COG0364 Glucose-6-phosphate 1-dehydrogenase; PfamMatches:PF02781.1 YP_006232194.1 COGmatches:COG0362 6-phosphogluconate dehydrogenase; PfamMatches:PF00393.13 YP_006232195.1 COGmatches:COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; PfamMatches:PF00817.14 YP_006232197.1 COGmatches:COG0706 Preprotein translocase subunit YidC; PfamMatches:PF02096.14 YP_006232198.1 COGmatches:COG3361 Uncharacterized conserved protein; PfamMatches:PF09844.3 YP_006232199.1 COGmatches:COG2195 Di- and tripeptidases; PfamMatches:PF01546.22 YP_006232200.1 'COGmatches:COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PfamMatches:PF01039.16' YP_006232201.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF00903.19 YP_006232202.1 COGmatches:COG1376 Uncharacterized protein conserved in bacteria; PfamMatches:PF03734.8 YP_006232203.1 COGmatches:COG4129 Predicted membrane protein; PfamMatches:PF11728.2 YP_006232204.1 'COGmatches:COG1126 ABC-type polar amino acid transport system, ATPase component; PfamMatches:PF00005.21' YP_006232205.1 'COGmatches:COG0765 ABC-type amino acid transport system, permease component; PfamMatches:PF00528.16' YP_006232206.1 'COGmatches:COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; PfamMatches:PF00497.14' YP_006232207.1 PfamMatches:PF06491.5 YP_006232208.1 COGmatches:COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; PfamMatches:PF00781.18; TIGRfamMatches:TIGR00147 YP_006232209.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232210.1 'COGmatches:COG4978 Transcriptional regulator, effector-binding domain/component; PfamMatches:PF00376.17' YP_006232211.1 'COGmatches:COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; PfamMatches:PF00198.17' YP_006232212.1 'COGmatches:COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; PfamMatches:PF00676.14' YP_006232213.1 'COGmatches:COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; PfamMatches:PF07992.8' YP_006232214.1 COGmatches:COG3426 Butyrate kinase; PfamMatches:PF00871.11 YP_006232215.1 COGmatches:COG0334 Glutamate dehydrogenase/leucine dehydrogenase; PfamMatches:PF00208.15 YP_006232216.1 COGmatches:COG0280 Phosphotransacetylase; PfamMatches:PF01515.13 YP_006232217.1 'COGmatches:COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; PfamMatches:PF00158.20' YP_006232218.1 PfamMatches:PF11118.2 YP_006232219.1 COGmatches:COG2513 PEP phosphonomutase and related enzymes; PfamMatches:PF00463.15 YP_006232220.1 COGmatches:COG2079 Uncharacterized protein involved in propionate catabolism; PfamMatches:PF03972.8 YP_006232221.1 COGmatches:COG0372 Citrate synthase; PfamMatches:PF00285.15 YP_006232222.1 COGmatches:COG1960 Acyl-CoA dehydrogenases; PfamMatches:PF00441.1 YP_006232223.1 COGmatches:COG1250 3-hydroxyacyl-CoA dehydrogenase; PfamMatches:PF02737.12 YP_006232224.1 COGmatches:COG0183 Acetyl-CoA acetyltransferase; PfamMatches:PF00108.1 YP_006232225.1 COGmatches:COG0584 Glycerophosphoryl diester phosphodiesterase; PfamMatches:PF03009.11 YP_006232226.1 COGmatches:COG0860 N-acetylmuramoyl-L-alanine amidase; PfamMatches:PF01520.12 YP_006232229.1 'COGmatches:COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; PfamMatches:PF00724.14' YP_006232232.1 PfamMatches:PF08769.5 YP_006232233.1 COGmatches:COG0750 Predicted membrane-associated Zn-dependent proteases 1; PfamMatches:PF05580.6 YP_006232234.1 COGmatches:COG0497 ATPase involved in DNA repair; PfamMatches:PF02463.13 YP_006232235.1 COGmatches:COG1438 Arginine repressor; PfamMatches:PF01316.15 YP_006232236.1 COGmatches:COG1189 Predicted rRNA methylase; PfamMatches:PF01728.13 YP_006232237.1 COGmatches:COG1154 Deoxyxylulose-5-phosphate synthase; PfamMatches:PF02779.18 YP_006232239.1 COGmatches:COG0142 Geranylgeranyl pyrophosphate synthase; PfamMatches:PF00348.11 YP_006232240.1 COGmatches:COG1722 Exonuclease VII small subunit; PfamMatches:PF02609.10 YP_006232241.1 'COGmatches:COG1570 Exonuclease VII, large subunit; PfamMatches:PF02601.9' YP_006232242.1 'COGmatches:COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; PfamMatches:PF02882.13' YP_006232243.1 COGmatches:COG0781 Transcription termination factor; PfamMatches:PF01029.12 YP_006232244.1 COGmatches:COG1302 Uncharacterized protein conserved in bacteria; PfamMatches:PF03780.7 YP_006232245.1 COGmatches:COG0439 Biotin carboxylase; PfamMatches:PF02786.11 YP_006232246.1 COGmatches:COG0511 Biotin carboxyl carrier protein; PfamMatches:PF00364.16 YP_006232247.1 PfamMatches:PF12685.1 YP_006232249.1 PfamMatches:PF09581.4 YP_006232250.1 PfamMatches:PF09546.4 YP_006232251.1 PfamMatches:PF06686.5 YP_006232252.1 PfamMatches:PF06686.5 YP_006232253.1 PfamMatches:PF09548.4 YP_006232254.1 COGmatches:COG3854 Uncharacterized protein conserved in bacteria YP_006232255.1 PfamMatches:PF10942.2 YP_006232256.1 COGmatches:COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); PfamMatches:PF08207.6 YP_006232257.1 COGmatches:COG0006 Xaa-Pro aminopeptidase; PfamMatches:PF00557.1 YP_006232258.1 COGmatches:COG0757 3-dehydroquinate dehydratase II; PfamMatches:PF01220.1 YP_006232259.1 PfamMatches:PF11085.2 YP_006232260.1 COGmatches:COG3872 Predicted metal-dependent enzyme; PfamMatches:PF07136.5 YP_006232262.1 COGmatches:COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; PfamMatches:PF01734.1 YP_006232263.1 COGmatches:COG1321 Mn-dependent transcriptional regulator; PfamMatches:PF01325.13 YP_006232264.1 COGmatches:COG0095 Lipoate-protein ligase A; PfamMatches:PF03099.13 YP_006232265.1 COGmatches:COG0607 Rhodanese-related sulfurtransferase; PfamMatches:PF00581.14 YP_006232266.1 'COGmatches:COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain; PfamMatches:PF02347.10' YP_006232267.1 'COGmatches:COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; PfamMatches:PF02347.10' YP_006232268.1 COGmatches:COG0404 Glycine cleavage system T protein (aminomethyltransferase); PfamMatches:PF01571.15 YP_006232269.1 'COGmatches:COG0553 Superfamily II DNA/RNA helicases, SNF2 family; PfamMatches:PF00176.17' YP_006232270.1 PfamMatches:PF11079.2 YP_006232271.1 PfamMatches:PF08671.4 YP_006232272.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF01381.16 YP_006232273.1 PfamMatches:PF12389.2 YP_006232274.1 COGmatches:COG0681 Signal peptidase I; PfamMatches:PF00717.17 YP_006232279.1 COGmatches:COG4940 Competence protein ComGF YP_006232281.1 'COGmatches:COG2165 Type II secretory pathway, pseudopilin PulG' YP_006232282.1 COGmatches:COG4537 Competence protein ComGC; PfamMatches:PF07963.6 YP_006232283.1 'COGmatches:COG1459 Type II secretory pathway, component PulF; PfamMatches:PF00482.17' YP_006232284.1 'COGmatches:COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PfamMatches:PF00437.14' YP_006232286.1 COGmatches:COG0517 FOG: CBS domain; PfamMatches:PF00571.22 YP_006232287.1 COGmatches:COG0598 Mg2+ and Co2+ transporters; PfamMatches:PF01544.12 YP_006232288.1 COGmatches:COG1253 Hemolysins and related proteins containing CBS domains; PfamMatches:PF01595.14 YP_006232289.1 PfamMatches:PF01740.15 YP_006232290.1 'COGmatches:COG1393 Arsenate reductase and related proteins, glutaredoxin family; PfamMatches:PF03960.9' YP_006232291.1 PfamMatches:PF11117.2 YP_006232292.1 'COGmatches:COG0491 Zn-dependent hydrolases, including glyoxylases; PfamMatches:PF00753.21' YP_006232293.1 PfamMatches:PF10958.2 YP_006232294.1 COGmatches:COG0011 Uncharacterized conserved protein; PfamMatches:PF01910.11; TIGRfamMatches:TIGR00106 YP_006232296.1 COGmatches:COG2866 Predicted carboxypeptidase; PfamMatches:PF00246.1 YP_006232297.1 'COGmatches:COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; PfamMatches:PF00884.17' YP_006232298.1 COGmatches:COG1940 Transcriptional regulator/sugar kinase; PfamMatches:PF00480.14 YP_006232299.1 COGmatches:COG4483 Uncharacterized protein conserved in bacteria; PfamMatches:PF06014.5 YP_006232300.1 COGmatches:COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); PfamMatches:PF01694.16 YP_006232302.1 COGmatches:COG0212 5-formyltetrahydrofolate cyclo-ligase; PfamMatches:PF01812.14 YP_006232303.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006232307.1 PfamMatches:PF02618.10 YP_006232308.1 'COGmatches:COG1117 ABC-type phosphate transport system, ATPase component; PfamMatches:PF00005.21' YP_006232309.1 'COGmatches:COG1117 ABC-type phosphate transport system, ATPase component; PfamMatches:PF00005.21' YP_006232310.1 'COGmatches:COG0581 ABC-type phosphate transport system, permease component; PfamMatches:PF00528.16' YP_006232311.1 'COGmatches:COG0573 ABC-type phosphate transport system, permease component; PfamMatches:PF00528.16' YP_006232312.1 'COGmatches:COG0226 ABC-type phosphate transport system, periplasmic component; PfamMatches:PF12849.1' YP_006232313.1 COGmatches:COG0768 Cell division protein FtsI/penicillin-binding protein 2; PfamMatches:PF00905.16 YP_006232314.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232315.1 COGmatches:COG0605 Superoxide dismutase; PfamMatches:PF02777.12 YP_006232316.1 COGmatches:COG2839 Uncharacterized protein conserved in bacteria; PfamMatches:PF04306.7 YP_006232317.1 PfamMatches:PF06691.5 YP_006232319.1 COGmatches:COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; PfamMatches:PF04551.8 YP_006232321.1 COGmatches:COG5663 Uncharacterized conserved protein YP_006232322.1 COGmatches:COG0735 Fe2+/Zn2+ uptake regulation proteins; PfamMatches:PF01475.13 YP_006232323.1 COGmatches:COG1284 Uncharacterized conserved protein; PfamMatches:PF10035.3 YP_006232324.1 PfamMatches:PF11116.2 YP_006232325.1 COGmatches:COG0648 Endonuclease IV; PfamMatches:PF01261.18 YP_006232326.1 COGmatches:COG0513 Superfamily II DNA and RNA helicases; PfamMatches:PF00270.23 YP_006232328.1 COGmatches:COG0761 Penicillin tolerance protein; PfamMatches:PF02401.12 YP_006232329.1 COGmatches:COG0327 Uncharacterized conserved protein; PfamMatches:PF01784.12 YP_006232330.1 COGmatches:COG2384 Predicted SAM-dependent methyltransferase; PfamMatches:PF04816.6 YP_006232331.1 'COGmatches:COG2010 Cytochrome c, mono- and diheme variants; PfamMatches:PF00034.15' YP_006232333.1 'COGmatches:COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); PfamMatches:PF04539.10' YP_006232334.1 COGmatches:COG0358 DNA primase (bacterial type); PfamMatches:PF08275.5 YP_006232335.1 COGmatches:COG1671 Uncharacterized protein conserved in bacteria; PfamMatches:PF02639.8 YP_006232336.1 COGmatches:COG1806 Uncharacterized protein conserved in bacteria; PfamMatches:PF03618.8 YP_006232337.1 COGmatches:COG0517 FOG: CBS domain; PfamMatches:PF00571.22 YP_006232338.1 'COGmatches:COG0751 Glycyl-tRNA synthetase, beta subunit; PfamMatches:PF02092.11' YP_006232339.1 'COGmatches:COG0752 Glycyl-tRNA synthetase, alpha subunit; PfamMatches:PF02091.9' YP_006232340.1 COGmatches:COG1381 Recombinational DNA repair protein (RecF pathway); PfamMatches:PF02565.9 YP_006232342.1 COGmatches:COG1159 GTPase; PfamMatches:PF01926.17 YP_006232343.1 COGmatches:COG0295 Cytidine deaminase; PfamMatches:PF00383.1 YP_006232344.1 COGmatches:COG0818 Diacylglycerol kinase; PfamMatches:PF01219.13 YP_006232345.1 COGmatches:COG0319 Predicted metal-dependent hydrolase; PfamMatches:PF02130.11; TIGRfamMatches:TIGR00043 YP_006232346.1 COGmatches:COG1480 Predicted membrane-associated HD superfamily hydrolase; PfamMatches:PF07697.5 YP_006232347.1 'COGmatches:COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; PfamMatches:PF02562.10' YP_006232348.1 PfamMatches:PF06898.5 YP_006232349.1 PfamMatches:PF07873.5 YP_006232351.1 COGmatches:COG4864 Uncharacterized protein conserved in bacteria; PfamMatches:PF12127.2 YP_006232352.1 COGmatches:COG1030 Membrane-bound serine protease (ClpP class); PfamMatches:PF01957.12 YP_006232353.1 COGmatches:COG1610 Uncharacterized conserved protein; PfamMatches:PF09424.4 YP_006232354.1 COGmatches:COG0828 Ribosomal protein S21; PfamMatches:PF01165.14 YP_006232355.1 COGmatches:COG1283 Na+/phosphate symporter; PfamMatches:PF02690.9 YP_006232356.1 COGmatches:COG0621 2-methylthioadenine synthetase; PfamMatches:PF04055.15; TIGRfamMatches:TIGR00089 YP_006232357.1 COGmatches:COG1385 Uncharacterized protein conserved in bacteria; PfamMatches:PF04452.8; TIGRfamMatches:TIGR00046 YP_006232358.1 COGmatches:COG2264 Ribosomal protein L11 methylase; PfamMatches:PF06325.7 YP_006232359.1 COGmatches:COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; PfamMatches:PF01556.12 YP_006232361.1 COGmatches:COG0443 Molecular chaperone; PfamMatches:PF00012.14 YP_006232362.1 COGmatches:COG0576 Molecular chaperone GrpE (heat shock protein); PfamMatches:PF01025.13 YP_006232363.1 COGmatches:COG1420 Transcriptional regulator of heat shock gene; PfamMatches:PF01628.15 YP_006232364.1 COGmatches:COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; PfamMatches:PF06969.10 YP_006232365.1 COGmatches:COG0481 Membrane GTPase LepA; PfamMatches:PF06421.6 YP_006232366.1 PfamMatches:PF12438.2 YP_006232367.1 PfamMatches:PF07454.5 YP_006232368.1 PfamMatches:PF03418.8 YP_006232369.1 COGmatches:COG0268 Ribosomal protein S20; PfamMatches:PF01649.12 YP_006232370.1 'COGmatches:COG1466 DNA polymerase III, delta subunit; PfamMatches:PF06144.7' YP_006232372.1 COGmatches:COG0658 Predicted membrane metal-binding protein; PfamMatches:PF03772.10 YP_006232373.1 COGmatches:COG2131 Deoxycytidylate deaminase; PfamMatches:PF00383.1 YP_006232374.1 COGmatches:COG1555 DNA uptake protein and related DNA-binding proteins; PfamMatches:PF12836.1 YP_006232375.1 COGmatches:COG0345 Pyrroline-5-carboxylate reductase; PfamMatches:PF03807.11 YP_006232376.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF12847.1 YP_006232377.1 COGmatches:COG0799 Uncharacterized homolog of plant Iojap protein; PfamMatches:PF02410.9 YP_006232378.1 COGmatches:COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism; PfamMatches:PF01966.16; TIGRfamMatches:TIGR00488 YP_006232379.1 COGmatches:COG1057 Nicotinic acid mononucleotide adenylyltransferase; PfamMatches:PF01467.1; TIGRfamMatches:TIGR00482 YP_006232380.1 'COGmatches:COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; PfamMatches:PF01985.15' YP_006232381.1 COGmatches:COG0169 Shikimate 5-dehydrogenase; PfamMatches:PF08501.5 YP_006232382.1 COGmatches:COG1161 Predicted GTPases; PfamMatches:PF01926.17 YP_006232383.1 COGmatches:COG2179 Predicted hydrolase of the HAD superfamily; PfamMatches:PF09419.4 YP_006232384.1 PfamMatches:PF08970.4 YP_006232385.1 COGmatches:COG2755 Lysophospholipase L1 and related esterases; PfamMatches:PF00657.1 YP_006232386.1 COGmatches:COG0398 Uncharacterized conserved protein; PfamMatches:PF09335.5 YP_006232390.1 COGmatches:COG1191 DNA-directed RNA polymerase specialized sigma subunit; PfamMatches:PF04542.8 YP_006232391.1 PfamMatches:PF10592.3 YP_006232393.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF01381.16 YP_006232396.1 COGmatches:COG1191 DNA-directed RNA polymerase specialized sigma subunit; PfamMatches:PF04545.10 YP_006232400.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF07719.11 YP_006232403.1 COGmatches:COG0451 Nucleoside-diphosphate-sugar epimerases; PfamMatches:PF01370.15 YP_006232404.1 COGmatches:COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PfamMatches:PF00027.23 YP_006232405.1 COGmatches:COG5444 Uncharacterized conserved protein; PfamMatches:PF04740.6 YP_006232407.1 'COGmatches:COG2732 Barstar, RNAse (barnase) inhibitor; PfamMatches:PF01337.12' YP_006232410.1 PfamMatches:PF03629.12 YP_006232411.1 PfamMatches:PF03551.8 YP_006232412.1 COGmatches:COG0563 Adenylate kinase and related kinases YP_006232414.1 COGmatches:COG0730 Predicted permeases; PfamMatches:PF01925.13 YP_006232415.1 'COGmatches:COG0425 Predicted redox protein, regulator of disulfide bond formation; PfamMatches:PF01206.1' YP_006232416.1 'COGmatches:COG0491 Zn-dependent hydrolases, including glyoxylases; PfamMatches:PF00753.21' YP_006232417.1 'COGmatches:COG0425 Predicted redox protein, regulator of disulfide bond formation; PfamMatches:PF01206.1' YP_006232418.1 COGmatches:COG0607 Rhodanese-related sulfurtransferase; PfamMatches:PF00581.14 YP_006232419.1 COGmatches:COG2210 Uncharacterized conserved protein YP_006232420.1 COGmatches:COG1937 Uncharacterized protein conserved in bacteria; PfamMatches:PF02583.11 YP_006232421.1 COGmatches:COG0662 Mannose-6-phosphate isomerase; PfamMatches:PF07883.5 YP_006232422.1 'COGmatches:COG4978 Transcriptional regulator, effector-binding domain/component; PfamMatches:PF00376.17' YP_006232423.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232424.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006232425.1 'COGmatches:COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; PfamMatches:PF01799.14' YP_006232426.1 'COGmatches:COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; PfamMatches:PF00941.15' YP_006232427.1 'COGmatches:COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; PfamMatches:PF02738.12' YP_006232428.1 COGmatches:COG2068 Uncharacterized MobA-related protein; PfamMatches:PF12804.1 YP_006232429.1 'COGmatches:COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; PfamMatches:PF02625.10' YP_006232430.1 PfamMatches:PF06081.5 YP_006232431.1 PfamMatches:PF07485.5 YP_006232432.1 COGmatches:COG2072 Predicted flavoprotein involved in K+ transport; PfamMatches:PF00743.13 YP_006232433.1 COGmatches:COG1230 Co/Zn/Cd efflux system component; PfamMatches:PF01545.15 YP_006232435.1 COGmatches:COG1609 Transcriptional regulators YP_006232437.1 COGmatches:COG1335 Amidases related to nicotinamidase; PfamMatches:PF00857.14 YP_006232440.1 COGmatches:COG2318 Uncharacterized protein conserved in bacteria; PfamMatches:PF05163.6 YP_006232443.1 PfamMatches:PF04439.6 YP_006232444.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006232445.1 COGmatches:COG2070 Dioxygenases related to 2-nitropropane dioxygenase; PfamMatches:PF03060.9 YP_006232446.1 COGmatches:COG0796 Glutamate racemase; PfamMatches:PF01177.16 YP_006232449.1 COGmatches:COG2186 Transcriptional regulators; PfamMatches:PF07729.6 YP_006232451.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232452.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006232453.1 'COGmatches:COG3958 Transketolase, C-terminal subunit; PfamMatches:PF02779.18' YP_006232454.1 'COGmatches:COG3959 Transketolase, N-terminal subunit; PfamMatches:PF00456.15' YP_006232455.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232456.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006232457.1 COGmatches:COG3443 Predicted periplasmic or secreted protein; PfamMatches:PF09223.5 YP_006232459.1 PfamMatches:PF01374.12 YP_006232462.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006232463.1 COGmatches:COG4991 Uncharacterized protein with a bacterial SH3 domain homologue YP_006232464.1 COGmatches:COG4991 Uncharacterized protein with a bacterial SH3 domain homologue; PfamMatches:PF08239.5 YP_006232466.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF12681.1 YP_006232468.1 COGmatches:COG5577 Spore coat protein; PfamMatches:PF07875.6 YP_006232469.1 COGmatches:COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; PfamMatches:PF08240.6 YP_006232471.1 COGmatches:COG5577 Spore coat protein; PfamMatches:PF07875.6 YP_006232472.1 COGmatches:COG1621 Beta-fructosidases (levanase/invertase); PfamMatches:PF00251.14 YP_006232473.1 'COGmatches:COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PfamMatches:PF03613.8' YP_006232474.1 'COGmatches:COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PfamMatches:PF03609.8' YP_006232475.1 'COGmatches:COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PfamMatches:PF03830.9' YP_006232476.1 'COGmatches:COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PfamMatches:PF03610.10' YP_006232477.1 COGmatches:COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; NOTE=COGmatches:COG3933 Transcriptional antiterminator; PfamMatches:PF00158.20 YP_006232478.1 COGmatches:COG1113 Gamma-aminobutyrate permease and related permeases; PfamMatches:PF00324.15 YP_006232479.1 COGmatches:COG1280 Putative threonine efflux protein; PfamMatches:PF01810.12 YP_006232480.1 COGmatches:COG1378 Predicted transcriptional regulators; PfamMatches:PF01978.13 YP_006232481.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF08281.6' YP_006232482.1 PfamMatches:PF11738.2 YP_006232483.1 COGmatches:COG1835 Predicted acyltransferases; PfamMatches:PF01757.16 YP_006232485.1 'COGmatches:COG0369 Sulfite reductase, alpha subunit (flavoprotein); NOTE=COGmatches:COG2124 Cytochrome P450; PfamMatches:PF00067.16' YP_006232486.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006232487.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF08241.6 YP_006232490.1 PfamMatches:PF09501.4 YP_006232491.1 COGmatches:COG2116 Formate/nitrite family of transporters; PfamMatches:PF01226.11 YP_006232492.1 COGmatches:COG5609 Uncharacterized conserved protein; PfamMatches:PF10057.3 YP_006232493.1 COGmatches:COG2427 Uncharacterized conserved protein; PfamMatches:PF07849.5 YP_006232495.1 COGmatches:COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; PfamMatches:PF01053.14 YP_006232496.1 COGmatches:COG0031 Cysteine synthase; PfamMatches:PF00291.19 YP_006232497.1 COGmatches:COG0775 Nucleoside phosphorylase; PfamMatches:PF01048.14 YP_006232498.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF08241.6 YP_006232499.1 PfamMatches:PF10750.3 YP_006232500.1 PfamMatches:PF07423.5 YP_006232501.1 COGmatches:COG0768 Cell division protein FtsI/penicillin-binding protein 2; PfamMatches:PF00905.16 YP_006232502.1 COGmatches:COG0782 Transcription elongation factor; PfamMatches:PF03449.9 YP_006232503.1 COGmatches:COG0572 Uridine kinase; PfamMatches:PF00485.12 YP_006232504.1 COGmatches:COG0826 Collagenase and related proteases; PfamMatches:PF01136.13 YP_006232505.1 COGmatches:COG0826 Collagenase and related proteases; PfamMatches:PF01136.13 YP_006232506.1 COGmatches:COG4122 Predicted O-methyltransferase; PfamMatches:PF01596.11 YP_006232507.1 COGmatches:COG1559 Predicted periplasmic solute-binding protein; PfamMatches:PF02618.10; TIGRfamMatches:TIGR00247 YP_006232508.1 COGmatches:COG3906 Uncharacterized protein conserved in bacteria; PfamMatches:PF06949.5 YP_006232509.1 COGmatches:COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); PfamMatches:PF03652.9 YP_006232510.1 COGmatches:COG4472 Uncharacterized protein conserved in bacteria; PfamMatches:PF06135.6 YP_006232511.1 COGmatches:COG0013 Alanyl-tRNA synthetase; PfamMatches:PF01411.13 YP_006232512.1 COGmatches:COG0628 Predicted permease; PfamMatches:PF01594.10 YP_006232516.1 COGmatches:COG3881 Uncharacterized protein conserved in bacteria; PfamMatches:PF05239.10 YP_006232517.1 'COGmatches:COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member' YP_006232518.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF00515.22 YP_006232519.1 'COGmatches:COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; PfamMatches:PF03054.1' YP_006232520.1 COGmatches:COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; PfamMatches:PF00266.1 YP_006232521.1 COGmatches:COG1959 Predicted transcriptional regulator; PfamMatches:PF02082.14 YP_006232522.1 COGmatches:COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; PfamMatches:PF12002.2 YP_006232523.1 COGmatches:COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; PfamMatches:PF00899.15 YP_006232525.1 COGmatches:COG0173 Aspartyl-tRNA synthetase; PfamMatches:PF00152.14 YP_006232526.1 COGmatches:COG0124 Histidyl-tRNA synthetase; PfamMatches:PF00587.19 YP_006232529.1 COGmatches:COG3103 SH3 domain protein; PfamMatches:PF08239.5 YP_006232530.1 COGmatches:COG1490 D-Tyr-tRNAtyr deacylase; PfamMatches:PF02580.1; TIGRfamMatches:TIGR00256 YP_006232531.1 COGmatches:COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; PfamMatches:PF04607.11 YP_006232532.1 COGmatches:COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; PfamMatches:PF00156.21 YP_006232533.1 COGmatches:COG0608 Single-stranded DNA-specific exonuclease; PfamMatches:PF10141.3 YP_006232534.1 COGmatches:COG5416 Uncharacterized integral membrane protein; PfamMatches:PF06305.5 YP_006232535.1 'COGmatches:COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels; PfamMatches:PF02080.15' YP_006232536.1 COGmatches:COG0342 Preprotein translocase subunit SecD; PfamMatches:PF02355.10 YP_006232538.1 COGmatches:COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; PfamMatches:PF01943.11 YP_006232539.1 COGmatches:COG2323 Predicted membrane protein; PfamMatches:PF04239.6 YP_006232540.1 PfamMatches:PF12670.1 YP_006232541.1 COGmatches:COG1862 Preprotein translocase subunit YajC; PfamMatches:PF02699.9 YP_006232542.1 COGmatches:COG0343 Queuine/archaeosine tRNA-ribosyltransferase; PfamMatches:PF01702.12 YP_006232543.1 COGmatches:COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); PfamMatches:PF02547.9 YP_006232544.1 PfamMatches:PF11146.2 YP_006232545.1 'COGmatches:COG2255 Holliday junction resolvasome, helicase subunit; PfamMatches:PF05496.6' YP_006232546.1 'COGmatches:COG0632 Holliday junction resolvasome, DNA-binding subunit; PfamMatches:PF01330.15' YP_006232547.1 PfamMatches:PF08955.4 YP_006232548.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232549.1 COGmatches:COG0673 Predicted dehydrogenases and related proteins; PfamMatches:PF01408.16 YP_006232550.1 COGmatches:COG0515 Serine/threonine protein kinase; PfamMatches:PF01636.17 YP_006232553.1 COGmatches:COG1115 Na+/alanine symporter; PfamMatches:PF01235.11 YP_006232554.1 COGmatches:COG0217 Uncharacterized conserved protein; PfamMatches:PF01709.14; TIGRfamMatches:TIGR01033 YP_006232555.1 PfamMatches:PF09580.4 YP_006232556.1 COGmatches:COG1388 FOG: LysM repeat; PfamMatches:PF01476.14 YP_006232557.1 COGmatches:COG0379 Quinolinate synthase; PfamMatches:PF02445.10 YP_006232558.1 COGmatches:COG0157 Nicotinate-nucleotide pyrophosphorylase; PfamMatches:PF01729.13 YP_006232559.1 COGmatches:COG0029 Aspartate oxidase; PfamMatches:PF00890.18 YP_006232560.1 COGmatches:COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; PfamMatches:PF00266.1 YP_006232561.1 COGmatches:COG1827 Predicted small molecule binding protein (contains 3H domain); PfamMatches:PF02829.8 YP_006232562.1 COGmatches:COG0077 Prephenate dehydratase; PfamMatches:PF00800.12 YP_006232563.1 COGmatches:COG4492 ACT domain-containing protein; PfamMatches:PF01842.19 YP_006232564.1 COGmatches:COG0536 Predicted GTPase; PfamMatches:PF01018.16 YP_006232567.1 COGmatches:COG0211 Ribosomal protein L27; PfamMatches:PF01016.13 YP_006232568.1 COGmatches:COG2868 Predicted ribosomal protein; PfamMatches:PF04327.6 YP_006232569.1 COGmatches:COG0261 Ribosomal protein L21; PfamMatches:PF00829.15 YP_006232570.1 COGmatches:COG1994 Zn-dependent proteases; PfamMatches:PF02163.16 YP_006232571.1 COGmatches:COG0739 Membrane proteins related to metalloendopeptidases; PfamMatches:PF01551.1 YP_006232572.1 COGmatches:COG2894 Septum formation inhibitor-activating ATPase; PfamMatches:PF01656.17 YP_006232573.1 COGmatches:COG0850 Septum formation inhibitor; PfamMatches:PF03775.10 YP_006232574.1 COGmatches:COG2891 Cell shape-determining protein; PfamMatches:PF04093.6 YP_006232575.1 COGmatches:COG1792 Cell shape-determining protein; PfamMatches:PF04085.8 YP_006232576.1 COGmatches:COG1077 Actin-like ATPase involved in cell morphogenesis; PfamMatches:PF06723.7 YP_006232577.1 COGmatches:COG2003 DNA repair proteins; PfamMatches:PF04002.9 YP_006232578.1 COGmatches:COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; PfamMatches:PF02545.8 YP_006232579.1 PfamMatches:PF05036.7 YP_006232580.1 'COGmatches:COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; PfamMatches:PF01478.12' YP_006232581.1 COGmatches:COG0285 Folylpolyglutamate synthase; PfamMatches:PF08245.6 YP_006232582.1 COGmatches:COG0525 Valyl-tRNA synthetase; PfamMatches:PF00133.16 YP_006232585.1 PfamMatches:PF01476.14 YP_006232586.1 COGmatches:COG0001 Glutamate-1-semialdehyde aminotransferase; PfamMatches:PF00202.15 YP_006232587.1 COGmatches:COG0113 Delta-aminolevulinic acid dehydratase; PfamMatches:PF00490.15 YP_006232588.1 COGmatches:COG1587 Uroporphyrinogen-III synthase; PfamMatches:PF02602.9 YP_006232589.1 COGmatches:COG0181 Porphobilinogen deaminase; PfamMatches:PF01379.14 YP_006232590.1 'COGmatches:COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; PfamMatches:PF01578.14' YP_006232591.1 COGmatches:COG0373 Glutamyl-tRNA reductase; PfamMatches:PF05201.1 YP_006232593.1 COGmatches:COG0218 Predicted GTPase; PfamMatches:PF01926.17 YP_006232594.1 'COGmatches:COG0466 ATP-dependent Lon protease, bacterial type; PfamMatches:PF05362.1' YP_006232595.1 COGmatches:COG1067 Predicted ATP-dependent protease; PfamMatches:PF05362.1 YP_006232596.1 'COGmatches:COG1219 ATP-dependent protease Clp, ATPase subunit; PfamMatches:PF07724.8' YP_006232597.1 COGmatches:COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PfamMatches:PF05698.8 YP_006232598.1 COGmatches:COG0457 FOG: TPR repeat YP_006232600.1 COGmatches:COG0066 3-isopropylmalate dehydratase small subunit; PfamMatches:PF00694.13 YP_006232601.1 COGmatches:COG0065 3-isopropylmalate dehydratase large subunit; PfamMatches:PF00330.14 YP_006232602.1 COGmatches:COG0473 Isocitrate/isopropylmalate dehydrogenase; PfamMatches:PF00180.14 YP_006232603.1 COGmatches:COG0119 Isopropylmalate/homocitrate/citramalate synthases; PfamMatches:PF00682.13 YP_006232604.1 COGmatches:COG0059 Ketol-acid reductoisomerase; PfamMatches:PF07991.6 YP_006232605.1 'COGmatches:COG0440 Acetolactate synthase, small (regulatory) subunit; PfamMatches:PF10369.3' YP_006232606.1 'COGmatches:COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; PfamMatches:PF02776.12' YP_006232611.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006232613.1 COGmatches:COG3861 Uncharacterized protein conserved in bacteria; PfamMatches:PF09557.4; TIGRfamMatches:TIGR02271 YP_006232614.1 COGmatches:COG0622 Predicted phosphoesterase; PfamMatches:PF12850.1 YP_006232615.1 COGmatches:COG0127 Xanthosine triphosphate pyrophosphatase; PfamMatches:PF01725.10; TIGRfamMatches:TIGR00042 YP_006232616.1 COGmatches:COG0689 RNase PH; PfamMatches:PF01138.15 YP_006232617.1 COGmatches:COG5401 Spore germination protein; PfamMatches:PF10646.3 YP_006232618.1 COGmatches:COG0796 Glutamate racemase; PfamMatches:PF01177.16 YP_006232619.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006232621.1 COGmatches:COG2771 DNA-binding HTH domain-containing proteins; PfamMatches:PF00196.13 YP_006232622.1 COGmatches:COG0824 Predicted thioesterase; PfamMatches:PF03061.16 YP_006232623.1 'COGmatches:COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit' YP_006232624.1 'COGmatches:COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; PfamMatches:PF00890.18' YP_006232625.1 'COGmatches:COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; PfamMatches:PF01127.16' YP_006232626.1 PfamMatches:PF10702.3 YP_006232627.1 COGmatches:COG0527 Aspartokinases; PfamMatches:PF00696.22 YP_006232628.1 COGmatches:COG0322 Nuclease subunit of the excinuclease complex; PfamMatches:PF08459.5 YP_006232629.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00085.14 YP_006232630.1 COGmatches:COG3534 Alpha-L-arabinofuranosidase; PfamMatches:PF06964.6 YP_006232631.1 'COGmatches:COG2025 Electron transfer flavoprotein, alpha subunit; PfamMatches:PF01012.15' YP_006232632.1 'COGmatches:COG2086 Electron transfer flavoprotein, beta subunit; PfamMatches:PF01012.15' YP_006232633.1 COGmatches:COG1024 Enoyl-CoA hydratase/carnithine racemase; PfamMatches:PF00378.14 YP_006232634.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF08359.5 YP_006232635.1 COGmatches:COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PfamMatches:PF00501.22 YP_006232636.1 COGmatches:COG1193 Mismatch repair ATPase (MutS family); PfamMatches:PF00488.15 YP_006232637.1 COGmatches:COG1796 DNA polymerase IV (family X); PfamMatches:PF02811.13 YP_006232638.1 'COGmatches:COG1286 Uncharacterized membrane protein, required for colicin V production; PfamMatches:PF02674.10' YP_006232639.1 COGmatches:COG3027 Uncharacterized protein conserved in bacteria; PfamMatches:PF05164.7 YP_006232640.1 COGmatches:COG1039 Ribonuclease HIII; PfamMatches:PF01351.12 YP_006232641.1 COGmatches:COG0072 Phenylalanyl-tRNA synthetase beta subunit; PfamMatches:PF03483.11 YP_006232642.1 COGmatches:COG0016 Phenylalanyl-tRNA synthetase alpha subunit; PfamMatches:PF01409.14 YP_006232643.1 COGmatches:COG0566 rRNA methylases; PfamMatches:PF00588.13 YP_006232645.1 COGmatches:COG3835 Sugar diacid utilization regulator; PfamMatches:PF05651.7 YP_006232646.1 COGmatches:COG0277 FAD/FMN-containing dehydrogenases; PfamMatches:PF02913.13 YP_006232647.1 COGmatches:COG0247 Fe-S oxidoreductase; PfamMatches:PF02754.10 YP_006232648.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF12681.1 YP_006232649.1 'COGmatches:COG1966 Carbon starvation protein, predicted membrane protein; PfamMatches:PF02554.8' YP_006232650.1 COGmatches:COG3595 Uncharacterized conserved protein YP_006232651.1 COGmatches:COG4709 Predicted membrane protein; PfamMatches:PF08006.5 YP_006232652.1 COGmatches:COG1695 Predicted transcriptional regulators; PfamMatches:PF03551.8 YP_006232653.1 COGmatches:COG3534 Alpha-L-arabinofuranosidase; PfamMatches:PF06964.6 YP_006232654.1 'COGmatches:COG0395 ABC-type sugar transport system, permease component; PfamMatches:PF00528.16' YP_006232655.1 'COGmatches:COG1175 ABC-type sugar transport systems, permease components; PfamMatches:PF00528.16' YP_006232656.1 'COGmatches:COG1653 ABC-type sugar transport system, periplasmic component; PfamMatches:PF01547.19' YP_006232657.1 COGmatches:COG0371 Glycerol dehydrogenase and related enzymes; PfamMatches:PF01761.1 YP_006232658.1 COGmatches:COG0647 Predicted sugar phosphatases of the HAD superfamily; PfamMatches:PF00702.1 YP_006232659.1 COGmatches:COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; PfamMatches:PF00596.15 YP_006232660.1 COGmatches:COG1069 Ribulose kinase; PfamMatches:PF02782.10 YP_006232661.1 COGmatches:COG2160 L-arabinose isomerase; PfamMatches:PF02610.9 YP_006232663.1 COGmatches:COG3507 Beta-xylosidase; PfamMatches:PF04616.8 YP_006232664.1 COGmatches:COG1363 Cellulase M and related proteins; PfamMatches:PF05343.8 YP_006232666.1 COGmatches:COG3326 Predicted membrane protein; PfamMatches:PF06961.7 YP_006232667.1 COGmatches:COG0292 Ribosomal protein L20; PfamMatches:PF00453.12 YP_006232668.1 COGmatches:COG0291 Ribosomal protein L35; PfamMatches:PF01632.13 YP_006232669.1 COGmatches:COG0290 Translation initiation factor 3 (IF-3); PfamMatches:PF00707.16 YP_006232670.1 COGmatches:COG1346 Putative effector of murein hydrolase; PfamMatches:PF04172.10 YP_006232671.1 COGmatches:COG1380 Putative effector of murein hydrolase LrgA; PfamMatches:PF03788.8 YP_006232672.1 COGmatches:COG3279 Response regulator of the LytR/AlgR family; PfamMatches:PF04397.9 YP_006232673.1 COGmatches:COG3275 Putative regulator of cell autolysis; PfamMatches:PF07694.6 YP_006232674.1 COGmatches:COG1011 Predicted hydrolase (HAD superfamily); PfamMatches:PF00702.1 YP_006232675.1 COGmatches:COG0441 Threonyl-tRNA synthetase; PfamMatches:PF00587.19 YP_006232676.1 PfamMatches:PF08812.5 YP_006232677.1 COGmatches:COG0398 Uncharacterized conserved protein; PfamMatches:PF09335.5 YP_006232678.1 COGmatches:COG1484 DNA replication protein; PfamMatches:PF07319.5 YP_006232679.1 COGmatches:COG3611 Replication initiation/membrane attachment protein; PfamMatches:PF07261.5 YP_006232680.1 'COGmatches:COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; PfamMatches:PF03477.10; TIGRfamMatches:TIGR00244' YP_006232681.1 COGmatches:COG1586 S-adenosylmethionine decarboxylase; PfamMatches:PF02675.9 YP_006232682.1 COGmatches:COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; PfamMatches:PF02800.14 YP_006232683.1 COGmatches:COG1733 Predicted transcriptional regulators; PfamMatches:PF01638.11 YP_006232684.1 COGmatches:COG2814 Arabinose efflux permease; PfamMatches:PF07690.10 YP_006232685.1 'COGmatches:COG0656 Aldo/keto reductases, related to diketogulonate reductase; PfamMatches:PF00248.15' YP_006232686.1 COGmatches:COG0237 Dephospho-CoA kinase; PfamMatches:PF01121.14; TIGRfamMatches:TIGR00152 YP_006232687.1 COGmatches:COG1971 Predicted membrane protein; PfamMatches:PF02659.9 YP_006232688.1 COGmatches:COG0266 Formamidopyrimidine-DNA glycosylase; PfamMatches:PF01149.18 YP_006232689.1 COGmatches:COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; PfamMatches:PF00476.14 YP_006232690.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006232691.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006232693.1 COGmatches:COG0039 Malate/lactate dehydrogenases; PfamMatches:PF00056.17 YP_006232694.1 COGmatches:COG0538 Isocitrate dehydrogenases; PfamMatches:PF00180.14 YP_006232695.1 COGmatches:COG0372 Citrate synthase; PfamMatches:PF00285.15 YP_006232697.1 COGmatches:COG2707 Predicted membrane protein; PfamMatches:PF04284.7 YP_006232698.1 COGmatches:COG0628 Predicted permease; PfamMatches:PF01594.10 YP_006232699.1 COGmatches:COG3030 Protein affecting phage T7 exclusion by the F plasmid; PfamMatches:PF04186.7 YP_006232700.1 COGmatches:COG0469 Pyruvate kinase; PfamMatches:PF00224.15 YP_006232701.1 COGmatches:COG0205 6-phosphofructokinase; PfamMatches:PF00365.14 YP_006232703.1 COGmatches:COG0825 Acetyl-CoA carboxylase alpha subunit; PfamMatches:PF03255.8 YP_006232704.1 COGmatches:COG0777 Acetyl-CoA carboxylase beta subunit; PfamMatches:PF01039.16 YP_006232705.1 COGmatches:COG0281 Malic enzyme; PfamMatches:PF03949.9 YP_006232706.1 'COGmatches:COG0587 DNA polymerase III, alpha subunit; PfamMatches:PF07733.6' YP_006232711.1 COGmatches:COG0618 Exopolyphosphatase-related proteins; PfamMatches:PF01368.14 YP_006232714.1 COGmatches:COG4109 Predicted transcriptional regulator containing CBS domains; PfamMatches:PF07085.6 YP_006232715.1 COGmatches:COG0730 Predicted permeases; PfamMatches:PF01925.13 YP_006232716.1 COGmatches:COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; PfamMatches:PF01546.22 YP_006232717.1 COGmatches:COG0196 FAD synthase; PfamMatches:PF01687.11 YP_006232718.1 'COGmatches:COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; PfamMatches:PF00296.14' YP_006232719.1 COGmatches:COG0695 Glutaredoxin and related proteins; PfamMatches:PF00462.18 YP_006232720.1 'COGmatches:COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; PfamMatches:PF00296.14' YP_006232721.1 'COGmatches:COG1126 ABC-type polar amino acid transport system, ATPase component; PfamMatches:PF00005.21' YP_006232722.1 'COGmatches:COG0765 ABC-type amino acid transport system, permease component; PfamMatches:PF00528.16' YP_006232723.1 'COGmatches:COG0765 ABC-type amino acid transport system, permease component; PfamMatches:PF00528.16' YP_006232724.1 'COGmatches:COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; PfamMatches:PF00497.14' YP_006232725.1 'COGmatches:COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; PfamMatches:PF00497.14' YP_006232726.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006232727.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006232728.1 COGmatches:COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; PfamMatches:PF12706.1 YP_006232729.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006232731.1 COGmatches:COG0165 Argininosuccinate lyase; PfamMatches:PF00206.1 YP_006232732.1 COGmatches:COG0137 Argininosuccinate synthase; PfamMatches:PF00764.13 YP_006232733.1 COGmatches:COG0521 Molybdopterin biosynthesis enzymes; PfamMatches:PF00994.18 YP_006232734.1 COGmatches:COG0282 Acetate kinase; PfamMatches:PF00871.11 YP_006232736.1 COGmatches:COG0827 Adenine-specific DNA methylase; PfamMatches:PF02384.10 YP_006232737.1 COGmatches:COG2077 Peroxiredoxin; PfamMatches:PF08534.4 YP_006232738.1 COGmatches:COG3874 Uncharacterized conserved protein; PfamMatches:PF09579.4 YP_006232739.1 PfamMatches:PF11167.2 YP_006232740.1 COGmatches:COG1714 Predicted membrane protein/domain; PfamMatches:PF06271.6 YP_006232741.1 COGmatches:COG0616 Periplasmic serine proteases (ClpP class); PfamMatches:PF01343.12 YP_006232743.1 COGmatches:COG0061 Predicted sugar kinase; PfamMatches:PF01513.15 YP_006232744.1 COGmatches:COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold; PfamMatches:PF07969.5 YP_006232745.1 COGmatches:COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; PfamMatches:PF00501.22 YP_006232746.1 PfamMatches:PF00269.14 YP_006232747.1 COGmatches:COG0301 Thiamine biosynthesis ATP pyrophosphatase; PfamMatches:PF02568.8; TIGRfamMatches:TIGR00342 YP_006232748.1 COGmatches:COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; PfamMatches:PF00266.1 YP_006232749.1 COGmatches:COG1114 Branched-chain amino acid permeases; PfamMatches:PF05525.7 YP_006232750.1 COGmatches:COG4477 Negative regulator of septation ring formation; PfamMatches:PF06160.6 YP_006232751.1 COGmatches:COG1387 Histidinol phosphatase and related hydrolases of the PHP family; PfamMatches:PF02811.13 YP_006232752.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006232753.1 COGmatches:COG1956 GAF domain-containing protein; PfamMatches:PF01590.20 YP_006232754.1 PfamMatches:PF00990.15 YP_006232756.1 COGmatches:COG0522 Ribosomal protein S4 and related proteins; PfamMatches:PF00163.13 YP_006232758.1 COGmatches:COG0162 Tyrosyl-tRNA synthetase; PfamMatches:PF00579.19 YP_006232760.1 COGmatches:COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; PfamMatches:PF00501.22 YP_006232761.1 PfamMatches:PF00583.18 YP_006232762.1 COGmatches:COG0517 FOG: CBS domain; PfamMatches:PF00571.22 YP_006232763.1 'COGmatches:COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein; PfamMatches:PF00850.13' YP_006232764.1 COGmatches:COG1360 Flagellar motor protein; PfamMatches:PF00691.14 YP_006232765.1 COGmatches:COG1291 Flagellar motor component; PfamMatches:PF01618.10 YP_006232766.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00532.15 YP_006232767.1 COGmatches:COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; PfamMatches:PF00793.14 YP_006232768.1 PfamMatches:PF11009.2 YP_006232769.1 COGmatches:COG4980 Gas vesicle protein; PfamMatches:PF12732.1 YP_006232770.1 COGmatches:COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain; PfamMatches:PF06103.5 YP_006232771.1 COGmatches:COG0773 UDP-N-acetylmuramate-alanine ligase; PfamMatches:PF08245.6 YP_006232772.1 COGmatches:COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; PfamMatches:PF01580.12 YP_006232773.1 COGmatches:COG0073 EMAP domain; PfamMatches:PF01588.14 YP_006232774.1 COGmatches:COG4848 Uncharacterized protein conserved in bacteria; PfamMatches:PF07285.5 YP_006232775.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00085.14 YP_006232777.1 PfamMatches:PF11071.2 YP_006232778.1 COGmatches:COG1363 Cellulase M and related proteins; PfamMatches:PF05343.8 YP_006232779.1 COGmatches:COG5584 Predicted small secreted protein; PfamMatches:PF03413.13 YP_006232780.1 COGmatches:COG0281 Malic enzyme; PfamMatches:PF03949.9 YP_006232781.1 'COGmatches:COG0491 Zn-dependent hydrolases, including glyoxylases; PfamMatches:PF00753.21' YP_006232782.1 COGmatches:COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; PfamMatches:PF02390.11; TIGRfamMatches:TIGR00091 YP_006232784.1 COGmatches:COG0510 Predicted choline kinase involved in LPS biosynthesis; PfamMatches:PF01636.17 YP_006232785.1 'COGmatches:COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; PfamMatches:PF00128.18' YP_006232786.1 COGmatches:COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; PfamMatches:PF00781.18; TIGRfamMatches:TIGR00147 YP_006232788.1 COGmatches:COG1514 2'-5' RNA ligase; PfamMatches:PF02834.10 YP_006232789.1 COGmatches:COG0031 Cysteine synthase; PfamMatches:PF00291.19 YP_006232790.1 COGmatches:COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; PfamMatches:PF01546.22 YP_006232791.1 COGmatches:COG2252 Permeases; PfamMatches:PF00860.14 YP_006232792.1 'COGmatches:COG4473 Predicted ABC-type exoprotein transport system, permease component; PfamMatches:PF05975.6' YP_006232793.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006232794.1 COGmatches:COG1349 Transcriptional regulators of sugar metabolism; PfamMatches:PF08220.6 YP_006232795.1 COGmatches:COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; PfamMatches:PF00849.16; TIGRfamMatches:TIGR00093 YP_006232796.1 COGmatches:COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; PfamMatches:PF01943.11 YP_006232797.1 COGmatches:COG2081 Predicted flavoproteins; PfamMatches:PF03486.8; TIGRfamMatches:TIGR00275 YP_006232798.1 COGmatches:COG1292 Choline-glycine betaine transporter; PfamMatches:PF02028.11 YP_006232799.1 PfamMatches:PF10957.2 YP_006232800.1 COGmatches:COG5578 Predicted integral membrane protein; PfamMatches:PF04854.8 YP_006232801.1 COGmatches:COG0673 Predicted dehydrogenases and related proteins; PfamMatches:PF02894.11 YP_006232803.1 'COGmatches:COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins; PfamMatches:PF07470.1' YP_006232804.1 'COGmatches:COG4209 ABC-type polysaccharide transport system, permease component; PfamMatches:PF00528.16' YP_006232805.1 COGmatches:COG2207 AraC-type DNA-binding domain-containing proteins; PfamMatches:PF12833.1 YP_006232806.1 'COGmatches:COG1653 ABC-type sugar transport system, periplasmic component; PfamMatches:PF01547.19' YP_006232807.1 'COGmatches:COG0395 ABC-type sugar transport system, permease component; PfamMatches:PF00528.16' YP_006232808.1 COGmatches:COG0451 Nucleoside-diphosphate-sugar epimerases; PfamMatches:PF01370.15 YP_006232809.1 COGmatches:COG0502 Biotin synthase and related enzymes; PfamMatches:PF06968.7 YP_006232810.1 COGmatches:COG0132 Dethiobiotin synthetase; PfamMatches:PF01656.17 YP_006232811.1 COGmatches:COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; PfamMatches:PF00155.15 YP_006232812.1 COGmatches:COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PfamMatches:PF00202.15 YP_006232813.1 COGmatches:COG1424 Pimeloyl-CoA synthetase; PfamMatches:PF03744.7 YP_006232815.1 COGmatches:COG1073 Hydrolases of the alpha/beta superfamily; PfamMatches:PF12695.1 YP_006232816.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00356.15 YP_006232817.1 'COGmatches:COG1653 ABC-type sugar transport system, periplasmic component; PfamMatches:PF01547.19' YP_006232818.1 'COGmatches:COG1175 ABC-type sugar transport systems, permease components; PfamMatches:PF00528.16' YP_006232819.1 'COGmatches:COG0395 ABC-type sugar transport system, permease component; PfamMatches:PF00528.16' YP_006232820.1 'COGmatches:COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; PfamMatches:PF11975.1' YP_006232821.1 COGmatches:COG0607 Rhodanese-related sulfurtransferase; PfamMatches:PF00581.14 YP_006232822.1 COGmatches:COG0495 Leucyl-tRNA synthetase; PfamMatches:PF00133.16 YP_006232825.1 COGmatches:COG2202 FOG: PAS/PAC domain; PfamMatches:PF00989.18 YP_006232826.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232828.1 'COGmatches:COG0577 ABC-type antimicrobial peptide transport system, permease component; PfamMatches:PF02687.15' YP_006232829.1 'COGmatches:COG1136 ABC-type antimicrobial peptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006232830.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006232831.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006232832.1 'COGmatches:COG0577 ABC-type antimicrobial peptide transport system, permease component; PfamMatches:PF02687.15' YP_006232833.1 'COGmatches:COG1136 ABC-type antimicrobial peptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006232834.1 PfamMatches:PF12730.1 YP_006232835.1 PfamMatches:PF12730.1 YP_006232836.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006232837.1 COGmatches:COG1725 Predicted transcriptional regulators; PfamMatches:PF00392.15 YP_006232839.1 PfamMatches:PF10732.3 YP_006232840.1 COGmatches:COG1242 Predicted Fe-S oxidoreductase; PfamMatches:PF04055.15; TIGRfamMatches:TIGR01212 YP_006232841.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF06962.6 YP_006232842.1 PfamMatches:PF10776.3 YP_006232843.1 COGmatches:COG2267 Lysophospholipase; PfamMatches:PF12697.1 YP_006232844.1 'COGmatches:COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; PfamMatches:PF00132.18' YP_006232845.1 COGmatches:COG1113 Gamma-aminobutyrate permease and related permeases; PfamMatches:PF00324.15 YP_006232846.1 COGmatches:COG0367 Asparagine synthase (glutamine-hydrolyzing); PfamMatches:PF00733.15 YP_006232847.1 COGmatches:COG0192 S-adenosylmethionine synthetase; PfamMatches:PF02773.10 YP_006232848.1 COGmatches:COG1866 Phosphoenolpyruvate carboxykinase (ATP); PfamMatches:PF01293.14 YP_006232849.1 PfamMatches:PF10763.3 YP_006232850.1 COGmatches:COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; PfamMatches:PF00326.1 YP_006232851.1 'COGmatches:COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; PfamMatches:PF09084.5' YP_006232852.1 'COGmatches:COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PfamMatches:PF00005.21' YP_006232853.1 'COGmatches:COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PfamMatches:PF00528.16' YP_006232854.1 COGmatches:COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; PfamMatches:PF00293.1 YP_006232855.1 COGmatches:COG4824 Phage-related holin (Lysis protein); PfamMatches:PF05105.6 YP_006232857.1 COGmatches:COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); PfamMatches:PF00210.18 YP_006232858.1 PfamMatches:PF12606.2 YP_006232860.1 COGmatches:COG1854 LuxS protein involved in autoinducer AI2 synthesis; PfamMatches:PF02664.9 YP_006232861.1 COGmatches:COG0759 Uncharacterized conserved protein; PfamMatches:PF01809.12; TIGRfamMatches:TIGR00278 YP_006232862.1 COGmatches:COG0288 Carbonic anhydrase; PfamMatches:PF00484.13 YP_006232863.1 COGmatches:COG0254 Ribosomal protein L31; PfamMatches:PF01197.12 YP_006232864.1 'COGmatches:COG1271 Cytochrome bd-type quinol oxidase, subunit 1; PfamMatches:PF01654.11' YP_006232865.1 'COGmatches:COG1294 Cytochrome bd-type quinol oxidase, subunit 2; PfamMatches:PF02322.9' YP_006232866.1 PfamMatches:PF07561.5 YP_006232867.1 'COGmatches:COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; PfamMatches:PF00950.11' YP_006232868.1 'COGmatches:COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; PfamMatches:PF00950.11' YP_006232869.1 'COGmatches:COG1121 ABC-type Mn/Zn transport systems, ATPase component; PfamMatches:PF00005.21' YP_006232870.1 'COGmatches:COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; PfamMatches:PF01297.11' YP_006232871.1 COGmatches:COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; PfamMatches:PF01188.1 YP_006232872.1 COGmatches:COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PfamMatches:PF00501.22 YP_006232873.1 COGmatches:COG0447 Dihydroxynaphthoic acid synthase; PfamMatches:PF00378.14 YP_006232874.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006232875.1 'COGmatches:COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; PfamMatches:PF02776.12' YP_006232876.1 COGmatches:COG1169 Isochorismate synthase; PfamMatches:PF00425.12 YP_006232878.1 COGmatches:COG1734 DnaK suppressor protein; PfamMatches:PF01258.11 YP_006232879.1 COGmatches:COG1210 UDP-glucose pyrophosphorylase; PfamMatches:PF00483.17 YP_006232881.1 COGmatches:COG1004 Predicted UDP-glucose 6-dehydrogenase; PfamMatches:PF03721.8 YP_006232882.1 COGmatches:COG0451 Nucleoside-diphosphate-sugar epimerases; PfamMatches:PF01370.15 YP_006232883.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006232886.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006232887.1 PfamMatches:PF01636.17 YP_006232888.1 COGmatches:COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog); PfamMatches:PF03073.9 YP_006232889.1 COGmatches:COG0058 Glucan phosphorylase; PfamMatches:PF00343.14 YP_006232890.1 COGmatches:COG0297 Glycogen synthase; PfamMatches:PF08323.5 YP_006232891.1 COGmatches:COG0448 ADP-glucose pyrophosphorylase; PfamMatches:PF00483.17 YP_006232892.1 COGmatches:COG0448 ADP-glucose pyrophosphorylase; PfamMatches:PF00483.17 YP_006232893.1 'COGmatches:COG0296 1,4-alpha-glucan branching enzyme; PfamMatches:PF02922.12' YP_006232895.1 COGmatches:COG3859 Predicted membrane protein; PfamMatches:PF09515.4 YP_006232896.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006232897.1 COGmatches:COG2268 Uncharacterized protein conserved in bacteria; PfamMatches:PF01145.19 YP_006232899.1 PfamMatches:PF12867.1 YP_006232900.1 PfamMatches:PF03473.11 YP_006232901.1 'COGmatches:COG1454 Alcohol dehydrogenase, class IV; PfamMatches:PF00465.13' YP_006232902.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006232903.1 COGmatches:COG1510 Predicted transcriptional regulators YP_006232905.1 'COGmatches:COG0569 K+ transport systems, NAD-binding component; PfamMatches:PF02254.12' YP_006232906.1 'COGmatches:COG0168 Trk-type K+ transport systems, membrane components; PfamMatches:PF02386.10' YP_006232907.1 COGmatches:COG4682 Predicted membrane protein; PfamMatches:PF05360.8 YP_006232908.1 COGmatches:COG1705 Muramidase (flagellum-specific); PfamMatches:PF01832.14 YP_006232909.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232911.1 PfamMatches:PF05995.6 YP_006232912.1 COGmatches:COG1968 Uncharacterized bacitracin resistance protein; PfamMatches:PF02673.12 YP_006232913.1 COGmatches:COG0628 Predicted permease; PfamMatches:PF01594.10 YP_006232914.1 COGmatches:COG0673 Predicted dehydrogenases and related proteins; PfamMatches:PF01408.16 YP_006232915.1 COGmatches:COG4806 L-rhamnose isomerase; PfamMatches:PF06134.5 YP_006232916.1 COGmatches:COG3254 Uncharacterized conserved protein; PfamMatches:PF05336.7 YP_006232917.1 COGmatches:COG1070 Sugar (pentulose and hexulose) kinases; PfamMatches:PF00370.15 YP_006232918.1 COGmatches:COG1349 Transcriptional regulators of sugar metabolism; PfamMatches:PF00455.16 YP_006232919.1 COGmatches:COG3347 Uncharacterized conserved protein; PfamMatches:PF00106.19 YP_006232920.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006232921.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006232922.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006232923.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006232926.1 COGmatches:COG0432 Uncharacterized conserved protein; PfamMatches:PF01894.11 YP_006232927.1 COGmatches:COG0366 Glycosidases; PfamMatches:PF00128.18 YP_006232928.1 COGmatches:COG1253 Hemolysins and related proteins containing CBS domains; PfamMatches:PF01595.14 YP_006232929.1 COGmatches:COG2738 Predicted Zn-dependent protease; PfamMatches:PF04298.6 YP_006232931.1 PfamMatches:PF11458.2 YP_006232932.1 'COGmatches:COG1226 Kef-type K+ transport systems, predicted NAD-binding component; PfamMatches:PF02254.12' YP_006232933.1 PfamMatches:PF08868.4 YP_006232935.1 COGmatches:COG0166 Glucose-6-phosphate isomerase; PfamMatches:PF00342.1 YP_006232936.1 'COGmatches:COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; PfamMatches:PF00465.13' YP_006232937.1 'COGmatches:COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; PfamMatches:PF00465.13' YP_006232938.1 COGmatches:COG2155 Uncharacterized conserved protein; PfamMatches:PF04070.6 YP_006232939.1 COGmatches:COG1098 Predicted RNA binding protein (contains ribosomal protein S1 domain); PfamMatches:PF00575.17 YP_006232940.1 COGmatches:COG0436 Aspartate/tyrosine/aromatic aminotransferase; PfamMatches:PF00155.15 YP_006232941.1 COGmatches:COG1522 Transcriptional regulators; PfamMatches:PF01037.15 YP_006232942.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006232943.1 PfamMatches:PF08958.4 YP_006232944.1 COGmatches:COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; PfamMatches:PF00155.15 YP_006232945.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006232946.1 PfamMatches:PF08810.4 YP_006232947.1 'COGmatches:COG5018 Inhibitor of the KinA pathway to sporulation, predicted exonuclease; PfamMatches:PF00929.18' YP_006232949.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006232950.1 COGmatches:COG0744 Membrane carboxypeptidase (penicillin-binding protein); PfamMatches:PF00912.16 YP_006232951.1 COGmatches:COG3011 Uncharacterized protein conserved in bacteria; PfamMatches:PF04134.6 YP_006232953.1 COGmatches:COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; PfamMatches:PF02518.20 YP_006232954.1 COGmatches:COG4565 Response regulator of citrate/malate metabolism; PfamMatches:PF00072.18 YP_006232955.1 'COGmatches:COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; PfamMatches:PF02608.8' YP_006232956.1 'COGmatches:COG3845 ABC-type uncharacterized transport systems, ATPase components; PfamMatches:PF00005.21' YP_006232957.1 'COGmatches:COG4603 ABC-type uncharacterized transport system, permease component; PfamMatches:PF02653.10' YP_006232958.1 'COGmatches:COG1079 Uncharacterized ABC-type transport system, permease component; PfamMatches:PF02653.10' YP_006232959.1 COGmatches:COG3493 Na+/citrate symporter; PfamMatches:PF03390.9 YP_006232961.1 'COGmatches:COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; PfamMatches:PF00361.14' YP_006232962.1 'COGmatches:COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit; PfamMatches:PF04039.7' YP_006232963.1 'COGmatches:COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit; PfamMatches:PF00420.18' YP_006232964.1 'COGmatches:COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; PfamMatches:PF00361.14' YP_006232965.1 'COGmatches:COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit; PfamMatches:PF01899.10' YP_006232966.1 'COGmatches:COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit; PfamMatches:PF04066.7' YP_006232967.1 'COGmatches:COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit; PfamMatches:PF03334.8' YP_006232968.1 'COGmatches:COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; PfamMatches:PF03061.16' YP_006232969.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006232970.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF07730.7 YP_006232971.1 PfamMatches:PF05952.6 YP_006232972.1 COGmatches:COG0142 Geranylgeranyl pyrophosphate synthase; PfamMatches:PF00348.11 YP_006232973.1 PfamMatches:PF08181.5 YP_006232975.1 COGmatches:COG3434 Predicted signal transduction protein containing EAL and modified HD-GYP domains; PfamMatches:PF00563.14 YP_006232976.1 COGmatches:COG1488 Nicotinic acid phosphoribosyltransferase; PfamMatches:PF04095.10 YP_006232977.1 COGmatches:COG1335 Amidases related to nicotinamidase; PfamMatches:PF00857.14 YP_006232978.1 COGmatches:COG5506 Uncharacterized conserved protein; PfamMatches:PF07997.5 YP_006232980.1 PfamMatches:PF10676.3 YP_006232981.1 COGmatches:COG0628 Predicted permease; PfamMatches:PF01594.10 YP_006232982.1 COGmatches:COG5428 Uncharacterized conserved small protein YP_006232983.1 COGmatches:COG5428 Uncharacterized conserved small protein YP_006232984.1 PfamMatches:PF10842.2 YP_006232986.1 COGmatches:COG1418 Predicted HD superfamily hydrolase; PfamMatches:PF01966.16 YP_006232987.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006232989.1 COGmatches:COG1511 Predicted membrane protein YP_006232990.1 COGmatches:COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; PfamMatches:PF01580.12 YP_006232991.1 COGmatches:COG4499 Predicted membrane protein; PfamMatches:PF10140.3 YP_006232992.1 COGmatches:COG5417 Uncharacterized small protein; PfamMatches:PF08817.4 YP_006232993.1 COGmatches:COG2508 Regulator of polyketide synthase expression; PfamMatches:PF06018.8 YP_006232994.1 COGmatches:COG0686 Alanine dehydrogenase; PfamMatches:PF01262.15 YP_006232995.1 COGmatches:COG5634 Uncharacterized conserved protein; PfamMatches:PF10042.3 YP_006232996.1 COGmatches:COG3251 Uncharacterized protein conserved in bacteria; PfamMatches:PF03621.7 YP_006232997.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00501.22 YP_006232998.1 COGmatches:COG1535 Isochorismate hydrolase; PfamMatches:PF00857.14 YP_006232999.1 COGmatches:COG1021 Peptide arylation enzymes; PfamMatches:PF00501.22 YP_006233000.1 COGmatches:COG1169 Isochorismate synthase; PfamMatches:PF00425.12 YP_006233001.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233002.1 COGmatches:COG2819 Predicted hydrolase of the alpha/beta superfamily; PfamMatches:PF00756.14 YP_006233003.1 COGmatches:COG2041 Sulfite oxidase and related enzymes; PfamMatches:PF00174.13 YP_006233004.1 COGmatches:COG2056 Predicted permease; PfamMatches:PF03553.8 YP_006233005.1 COGmatches:COG0260 Leucyl aminopeptidase; PfamMatches:PF00883.15 YP_006233006.1 COGmatches:COG1963 Uncharacterized protein conserved in bacteria; PfamMatches:PF02681.8 YP_006233007.1 COGmatches:COG3584 Uncharacterized protein conserved in bacteria; PfamMatches:PF06725.5 YP_006233010.1 'COGmatches:COG1252 NADH dehydrogenase, FAD-containing subunit; PfamMatches:PF07992.8' YP_006233012.1 COGmatches:COG0492 Thioredoxin reductase; PfamMatches:PF07992.8 YP_006233015.1 COGmatches:COG0516 IMP dehydrogenase/GMP reductase; PfamMatches:PF00478.19 YP_006233016.1 COGmatches:COG2808 Transcriptional regulator; PfamMatches:PF04299.6 YP_006233017.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006233018.1 COGmatches:COG0316 Uncharacterized conserved protein; PfamMatches:PF01521.14; TIGRfamMatches:TIGR00049 YP_006233019.1 COGmatches:COG0253 Diaminopimelate epimerase; PfamMatches:PF01678.13 YP_006233020.1 COGmatches:COG1972 Nucleoside permease; PfamMatches:PF07662.7 YP_006233021.1 COGmatches:COG4844 Uncharacterized protein conserved in bacteria; PfamMatches:PF07293.5 YP_006233022.1 'COGmatches:COG1252 NADH dehydrogenase, FAD-containing subunit; PfamMatches:PF07992.8' YP_006233023.1 COGmatches:COG4837 Uncharacterized protein conserved in bacteria; PfamMatches:PF07315.5 YP_006233024.1 COGmatches:COG0694 Thioredoxin-like proteins and domains; PfamMatches:PF01106.11 YP_006233025.1 COGmatches:COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; PfamMatches:PF00326.1 YP_006233026.1 COGmatches:COG0083 Homoserine kinase; PfamMatches:PF00288.20 YP_006233027.1 COGmatches:COG0498 Threonine synthase; PfamMatches:PF00291.19 YP_006233028.1 COGmatches:COG0460 Homoserine dehydrogenase; PfamMatches:PF00742.13 YP_006233030.1 COGmatches:COG1267 Phosphatidylglycerophosphatase A and related proteins; PfamMatches:PF04608.7 YP_006233031.1 COGmatches:COG0647 Predicted sugar phosphatases of the HAD superfamily; PfamMatches:PF00702.1 YP_006233032.1 COGmatches:COG2445 Uncharacterized conserved protein; PfamMatches:PF01934.11 YP_006233033.1 COGmatches:COG4470 Uncharacterized protein conserved in bacteria; PfamMatches:PF06265.5 YP_006233034.1 PfamMatches:PF09580.4 YP_006233035.1 COGmatches:COG0320 Lipoate synthase; PfamMatches:PF04055.15 YP_006233036.1 COGmatches:COG0739 Membrane proteins related to metalloendopeptidases; PfamMatches:PF01551.1 YP_006233037.1 PfamMatches:PF09560.4 YP_006233038.1 COGmatches:COG3377 Uncharacterized conserved protein; PfamMatches:PF08827.5 YP_006233039.1 'COGmatches:COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; PfamMatches:PF02872.12' YP_006233040.1 COGmatches:COG0730 Predicted permeases; PfamMatches:PF01925.13 YP_006233041.1 COGmatches:COG1801 Uncharacterized conserved protein; PfamMatches:PF01904.12 YP_006233043.1 COGmatches:COG0044 Dihydroorotase and related cyclic amidohydrolases; PfamMatches:PF01979.14 YP_006233044.1 COGmatches:COG2508 Regulator of polyketide synthase expression; PfamMatches:PF07905.5 YP_006233045.1 COGmatches:COG2233 Xanthine/uracil permeases; PfamMatches:PF00860.14 YP_006233046.1 COGmatches:COG2233 Xanthine/uracil permeases; PfamMatches:PF00860.14 YP_006233047.1 COGmatches:COG3648 Uricase (urate oxidase); PfamMatches:PF09349.4 YP_006233048.1 COGmatches:COG2351 Transthyretin-like protein; PfamMatches:PF00576.15 YP_006233050.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF04542.8' YP_006233054.1 PfamMatches:PF04738.7 YP_006233055.1 PfamMatches:PF02163.16 YP_006233061.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006233062.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006233064.1 COGmatches:COG1944 Uncharacterized conserved protein; PfamMatches:PF02624.10 YP_006233065.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00486.22 YP_006233066.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006233067.1 'COGmatches:COG0842 ABC-type multidrug transport system, permease component; PfamMatches:PF01061.18' YP_006233068.1 PfamMatches:PF09680.4 YP_006233069.1 'COGmatches:COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; PfamMatches:PF01799.14' YP_006233070.1 'COGmatches:COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; PfamMatches:PF02738.12' YP_006233071.1 'COGmatches:COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; PfamMatches:PF00941.15' YP_006233072.1 COGmatches:COG2068 Uncharacterized MobA-related protein; PfamMatches:PF12804.1 YP_006233073.1 'COGmatches:COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; PfamMatches:PF02625.10' YP_006233075.1 COGmatches:COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PfamMatches:PF00266.1 YP_006233076.1 COGmatches:COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; PfamMatches:PF01546.22 YP_006233078.1 COGmatches:COG2356 Endonuclease I; PfamMatches:PF04231.7 YP_006233079.1 'COGmatches:COG3839 ABC-type sugar transport systems, ATPase components; PfamMatches:PF00005.21' YP_006233080.1 COGmatches:COG2188 Transcriptional regulators; PfamMatches:PF07702.7 YP_006233081.1 'COGmatches:COG0524 Sugar kinases, ribokinase family; PfamMatches:PF00294.18' YP_006233082.1 'COGmatches:COG0395 ABC-type sugar transport system, permease component; PfamMatches:PF00528.16' YP_006233083.1 'COGmatches:COG1175 ABC-type sugar transport systems, permease components; PfamMatches:PF00528.16' YP_006233084.1 'COGmatches:COG1653 ABC-type sugar transport system, periplasmic component; PfamMatches:PF01547.19' YP_006233085.1 COGmatches:COG2222 Predicted phosphosugar isomerases; PfamMatches:PF01380.16 YP_006233086.1 COGmatches:COG0322 Nuclease subunit of the excinuclease complex; PfamMatches:PF01541.18 YP_006233088.1 COGmatches:COG0665 Glycine/D-amino acid oxidases (deaminating); PfamMatches:PF01266.18 YP_006233091.1 'COGmatches:COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; PfamMatches:PF01458.11' YP_006233092.1 COGmatches:COG0822 NifU homolog involved in Fe-S cluster formation; PfamMatches:PF01592.10 YP_006233093.1 COGmatches:COG0520 Selenocysteine lyase; PfamMatches:PF00266.1 YP_006233094.1 'COGmatches:COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; PfamMatches:PF01458.11' YP_006233095.1 'COGmatches:COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; PfamMatches:PF00005.21' YP_006233099.1 COGmatches:COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit; PfamMatches:PF02627.1 YP_006233100.1 'COGmatches:COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; PfamMatches:PF03180.8' YP_006233101.1 'COGmatches:COG2011 ABC-type metal ion transport system, permease component; PfamMatches:PF00528.16' YP_006233102.1 'COGmatches:COG1135 ABC-type metal ion transport system, ATPase component; PfamMatches:PF00005.21' YP_006233103.1 PfamMatches:PF02036.11 YP_006233104.1 COGmatches:COG0526 Thiol-disulfide isomerase and thioredoxins; PfamMatches:PF00085.14 YP_006233105.1 COGmatches:COG1658 Small primase-like proteins (Toprim domain); PfamMatches:PF01751.16 YP_006233106.1 PfamMatches:PF10830.2 YP_006233107.1 COGmatches:COG0509 Glycine cleavage system H protein (lipoate-binding); PfamMatches:PF01597.13 YP_006233108.1 'COGmatches:COG1393 Arsenate reductase and related proteins, glutaredoxin family; PfamMatches:PF03960.9' YP_006233109.1 COGmatches:COG1960 Acyl-CoA dehydrogenases; PfamMatches:PF00441.1 YP_006233110.1 COGmatches:COG0183 Acetyl-CoA acetyltransferase; PfamMatches:PF00108.1 YP_006233111.1 COGmatches:COG1250 3-hydroxyacyl-CoA dehydrogenase; NOTE=COGmatches:COG1024 Enoyl-CoA hydratase/carnithine racemase; PfamMatches:PF02737.12 YP_006233113.1 COGmatches:COG0506 Proline dehydrogenase; PfamMatches:PF01619.12 YP_006233115.1 PfamMatches:PF07875.6 YP_006233116.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006233117.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233118.1 PfamMatches:PF01361.1 YP_006233119.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233120.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006233121.1 PfamMatches:PF10835.2 YP_006233122.1 'COGmatches:COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PfamMatches:PF00005.21' YP_006233124.1 COGmatches:COG1164 Oligoendopeptidase F; PfamMatches:PF01432.14 YP_006233125.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233126.1 COGmatches:COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); PfamMatches:PF00210.18 YP_006233127.1 'COGmatches:COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; PfamMatches:PF00089.20' YP_006233128.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006233129.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006233131.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006233132.1 COGmatches:COG0114 Fumarase; PfamMatches:PF00206.1 YP_006233134.1 PfamMatches:PF03323.7 YP_006233135.1 PfamMatches:PF03845.7 YP_006233136.1 PfamMatches:PF05504.5 YP_006233137.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006233138.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF07730.7 YP_006233139.1 COGmatches:COG4758 Predicted membrane protein; PfamMatches:PF09922.3 YP_006233140.1 COGmatches:COG3595 Uncharacterized conserved protein YP_006233141.1 'COGmatches:COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; PfamMatches:PF04012.6' YP_006233142.1 PfamMatches:PF09922.3 YP_006233143.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233145.1 COGmatches:COG2096 Uncharacterized conserved protein; PfamMatches:PF01923.12 YP_006233146.1 'COGmatches:COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PfamMatches:PF00005.21' YP_006233147.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006233148.1 'COGmatches:COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PfamMatches:PF01497.12' YP_006233150.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233151.1 COGmatches:COG3386 Gluconolactonase; PfamMatches:PF08450.6 YP_006233152.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006233153.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006233155.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_006233156.1 PfamMatches:PF04545.10 YP_006233157.1 PfamMatches:PF12841.1 YP_006233158.1 COGmatches:COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes; PfamMatches:PF00190.16 YP_006233160.1 'COGmatches:COG0577 ABC-type antimicrobial peptide transport system, permease component; PfamMatches:PF12704.1' YP_006233161.1 'COGmatches:COG1136 ABC-type antimicrobial peptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006233162.1 COGmatches:COG0845 Membrane-fusion protein; PfamMatches:PF12700.1 YP_006233163.1 'COGmatches:COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PfamMatches:PF00005.21' YP_006233164.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006233165.1 'COGmatches:COG0609 ABC-type Fe3+-siderophore transport system, permease component; PfamMatches:PF01032.12' YP_006233166.1 'COGmatches:COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PfamMatches:PF01497.12' YP_006233168.1 COGmatches:COG0531 Amino acid transporters; PfamMatches:PF00324.15 YP_006233169.1 PfamMatches:PF09575.4 YP_006233170.1 COGmatches:COG1988 Predicted membrane-bound metal-dependent hydrolases; PfamMatches:PF04307.8 YP_006233171.1 'COGmatches:COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; PfamMatches:PF00884.17' YP_006233172.1 COGmatches:COG1910 Periplasmic molybdate-binding protein/domain; PfamMatches:PF12727.1 YP_006233173.1 'COGmatches:COG0725 ABC-type molybdate transport system, periplasmic component; PfamMatches:PF01547.19' YP_006233174.1 'COGmatches:COG4149 ABC-type molybdate transport system, permease component; PfamMatches:PF00528.16' YP_006233175.1 'COGmatches:COG0656 Aldo/keto reductases, related to diketogulonate reductase; PfamMatches:PF00248.15' YP_006233177.1 COGmatches:COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; PfamMatches:PF00999.15 YP_006233178.1 'COGmatches:COG0155 Sulfite reductase, beta subunit (hemoprotein); PfamMatches:PF01077.16' YP_006233179.1 'COGmatches:COG0369 Sulfite reductase, alpha subunit (flavoprotein); PfamMatches:PF00667.14' YP_006233180.1 COGmatches:COG3973 Superfamily I DNA and RNA helicases; PfamMatches:PF00580.15 YP_006233182.1 COGmatches:COG2860 Predicted membrane protein; PfamMatches:PF03458.7 YP_006233183.1 COGmatches:COG1495 Disulfide bond formation protein DsbB; PfamMatches:PF02600.10 YP_006233184.1 COGmatches:COG1651 Protein-disulfide isomerase YP_006233185.1 COGmatches:COG2217 Cation transport ATPase; PfamMatches:PF00122.14 YP_006233187.1 COGmatches:COG2217 Cation transport ATPase; PfamMatches:PF00122.14 YP_006233188.1 COGmatches:COG2608 Copper chaperone; PfamMatches:PF00403.20; TIGRfamMatches:TIGR00003 YP_006233189.1 COGmatches:COG1937 Uncharacterized protein conserved in bacteria; PfamMatches:PF02583.11 YP_006233190.1 COGmatches:COG0673 Predicted dehydrogenases and related proteins; PfamMatches:PF01408.16 YP_006233191.1 COGmatches:COG1182 Acyl carrier protein phosphodiesterase; PfamMatches:PF02525.11 YP_006233193.1 COGmatches:COG2076 Membrane transporters of cations and cationic drugs; PfamMatches:PF00893.13 YP_006233194.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006233195.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233196.1 COGmatches:COG0691 tmRNA-binding protein; PfamMatches:PF01668.12 YP_006233197.1 COGmatches:COG0557 Exoribonuclease R; PfamMatches:PF00773.13 YP_006233198.1 COGmatches:COG1647 Esterase/lipase; PfamMatches:PF12697.1 YP_006233199.1 COGmatches:COG1314 Preprotein translocase subunit SecG; PfamMatches:PF03840.8 YP_006233200.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006233201.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF01381.16 YP_006233202.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF12844.1 YP_006233203.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF12844.1 YP_006233204.1 COGmatches:COG1733 Predicted transcriptional regulators; PfamMatches:PF01638.11 YP_006233205.1 COGmatches:COG0840 Methyl-accepting chemotaxis protein; PfamMatches:PF00015.15 YP_006233206.1 'COGmatches:COG1174 ABC-type proline/glycine betaine transport systems, permease component; PfamMatches:PF00528.16' YP_006233207.1 COGmatches:COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); PfamMatches:PF04069.6 YP_006233208.1 'COGmatches:COG1174 ABC-type proline/glycine betaine transport systems, permease component; PfamMatches:PF00528.16' YP_006233209.1 'COGmatches:COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; PfamMatches:PF00571.22' YP_006233210.1 COGmatches:COG1510 Predicted transcriptional regulators; PfamMatches:PF12802.1 YP_006233211.1 'COGmatches:COG1174 ABC-type proline/glycine betaine transport systems, permease component; PfamMatches:PF00528.16' YP_006233212.1 COGmatches:COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); PfamMatches:PF04069.6 YP_006233213.1 'COGmatches:COG1174 ABC-type proline/glycine betaine transport systems, permease component; PfamMatches:PF00528.16' YP_006233214.1 'COGmatches:COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; PfamMatches:PF00005.21' YP_006233215.1 COGmatches:COG1510 Predicted transcriptional regulators; PfamMatches:PF12802.1 YP_006233216.1 COGmatches:COG2095 Multiple antibiotic transporter; PfamMatches:PF01914.11; TIGRfamMatches:TIGR00427 YP_006233219.1 COGmatches:COG4640 Predicted membrane protein YP_006233220.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006233221.1 COGmatches:COG0148 Enolase; PfamMatches:PF00113.1 YP_006233222.1 COGmatches:COG0696 Phosphoglyceromutase; PfamMatches:PF01676.12 YP_006233223.1 COGmatches:COG0149 Triosephosphate isomerase; PfamMatches:PF00121.12 YP_006233224.1 COGmatches:COG0126 3-phosphoglycerate kinase; PfamMatches:PF00162.13 YP_006233227.1 COGmatches:COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; PfamMatches:PF02800.14 YP_006233228.1 'COGmatches:COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; PfamMatches:PF04198.7' YP_006233229.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF00083.18 YP_006233230.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00392.15 YP_006233231.1 'COGmatches:COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; PfamMatches:PF00296.14' YP_006233232.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006233233.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006233234.1 COGmatches:COG1113 Gamma-aminobutyrate permease and related permeases; PfamMatches:PF00324.15 YP_006233235.1 COGmatches:COG3858 Predicted glycosyl hydrolase; PfamMatches:PF00704.22 YP_006233236.1 COGmatches:COG1556 Uncharacterized conserved protein; PfamMatches:PF02589.9 YP_006233237.1 COGmatches:COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain; PfamMatches:PF02589.9; TIGRfamMatches:TIGR00273 YP_006233238.1 COGmatches:COG0247 Fe-S oxidoreductase; PfamMatches:PF02754.10 YP_006233239.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006233240.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF07730.7 YP_006233241.1 'COGmatches:COG0842 ABC-type multidrug transport system, permease component; PfamMatches:PF12698.1' YP_006233242.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006233243.1 COGmatches:COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ; PfamMatches:PF12697.1 YP_006233244.1 'COGmatches:COG2208 Serine phosphatase RsbU, regulator of sigma subunit; PfamMatches:PF07228.6' YP_006233245.1 'COGmatches:COG3867 Arabinogalactan endo-1,4-beta-galactosidase; PfamMatches:PF07745.7' YP_006233246.1 COGmatches:COG1874 Beta-galactosidase; PfamMatches:PF02449.9 YP_006233247.1 'COGmatches:COG3833 ABC-type maltose transport systems, permease component; PfamMatches:PF00528.16' YP_006233248.1 'COGmatches:COG1175 ABC-type sugar transport systems, permease components; PfamMatches:PF00528.16' YP_006233249.1 COGmatches:COG2182 Maltose-binding periplasmic proteins/domains; PfamMatches:PF01547.19 YP_006233250.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00356.15 YP_006233251.1 COGmatches:COG2186 Transcriptional regulators; PfamMatches:PF07729.6 YP_006233252.1 COGmatches:COG1620 L-lactate permease; PfamMatches:PF02652.8 YP_006233253.1 'COGmatches:COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; PfamMatches:PF04552.7' YP_006233255.1 PfamMatches:PF09628.4 YP_006233256.1 COGmatches:COG5039 Exopolysaccharide biosynthesis protein; PfamMatches:PF04230.7 YP_006233257.1 COGmatches:COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; PfamMatches:PF01041.11 YP_006233258.1 COGmatches:COG0110 Acetyltransferase (isoleucine patch superfamily); PfamMatches:PF00132.18 YP_006233259.1 COGmatches:COG2148 Sugar transferases involved in lipopolysaccharide synthesis; PfamMatches:PF02397.10 YP_006233260.1 PfamMatches:PF01943.11 YP_006233261.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006233262.1 COGmatches:COG5039 Exopolysaccharide biosynthesis protein; PfamMatches:PF04230.7 YP_006233263.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006233265.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006233266.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006233267.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006233268.1 COGmatches:COG1086 Predicted nucleoside-diphosphate sugar epimerases; PfamMatches:PF02719.9 YP_006233269.1 COGmatches:COG3944 Capsular polysaccharide biosynthesis protein; PfamMatches:PF02706.9 YP_006233270.1 COGmatches:COG1396 Predicted transcriptional regulators; PfamMatches:PF01381.16 YP_006233271.1 COGmatches:COG2272 Carboxylesterase type B; PfamMatches:PF00135.22 YP_006233273.1 COGmatches:COG3479 Phenolic acid decarboxylase; PfamMatches:PF05870.5 YP_006233274.1 PfamMatches:PF11578.2 YP_006233275.1 COGmatches:COG1794 Aspartate racemase; PfamMatches:PF01177.16 YP_006233276.1 COGmatches:COG1680 Beta-lactamase class C and other penicillin binding proteins; PfamMatches:PF00144.18 YP_006233277.1 PfamMatches:PF02435.10 YP_006233278.1 COGmatches:COG1621 Beta-fructosidases (levanase/invertase); PfamMatches:PF00251.14 YP_006233279.1 COGmatches:COG0531 Amino acid transporters; PfamMatches:PF00324.15 YP_006233281.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006233282.1 COGmatches:COG2076 Membrane transporters of cations and cationic drugs; PfamMatches:PF00893.13 YP_006233283.1 COGmatches:COG2076 Membrane transporters of cations and cationic drugs; PfamMatches:PF00893.13 YP_006233284.1 PfamMatches:PF11553.2 YP_006233285.1 COGmatches:COG0740 Protease subunit of ATP-dependent Clp proteases; PfamMatches:PF00574.17 YP_006233286.1 COGmatches:COG0637 Predicted phosphatase/phosphohexomutase; PfamMatches:PF00702.1 YP_006233287.1 COGmatches:COG0366 Glycosidases; PfamMatches:PF00128.18 YP_006233288.1 COGmatches:COG5521 Predicted integral membrane protein; PfamMatches:PF06691.5 YP_006233289.1 'COGmatches:COG3833 ABC-type maltose transport systems, permease component; PfamMatches:PF00528.16' YP_006233290.1 'COGmatches:COG1175 ABC-type sugar transport systems, permease components; PfamMatches:PF00528.16' YP_006233291.1 COGmatches:COG2182 Maltose-binding periplasmic proteins/domains; PfamMatches:PF01547.19 YP_006233292.1 COGmatches:COG0366 Glycosidases; PfamMatches:PF00128.18 YP_006233293.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00356.15 YP_006233294.1 COGmatches:COG1611 Predicted Rossmann fold nucleotide-binding protein; PfamMatches:PF03641.8; TIGRfamMatches:TIGR00730 YP_006233295.1 COGmatches:COG1694 Predicted pyrophosphatase; PfamMatches:PF03819.11 YP_006233296.1 COGmatches:COG0659 Sulfate permease and related transporters (MFS superfamily); PfamMatches:PF00916.14 YP_006233297.1 COGmatches:COG0288 Carbonic anhydrase; PfamMatches:PF00484.13 YP_006233298.1 COGmatches:COG1052 Lactate dehydrogenase and related dehydrogenases; PfamMatches:PF02826.13 YP_006233299.1 'COGmatches:COG0577 ABC-type antimicrobial peptide transport system, permease component; PfamMatches:PF02687.15' YP_006233300.1 'COGmatches:COG1136 ABC-type antimicrobial peptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006233301.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006233302.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00486.22 YP_006233304.1 COGmatches:COG2162 Arylamine N-acetyltransferase; PfamMatches:PF00797.1 YP_006233305.1 'COGmatches:COG1925 Phosphotransferase system, HPr-related proteins; PfamMatches:PF00381.13' YP_006233306.1 COGmatches:COG1481 Uncharacterized protein conserved in bacteria; PfamMatches:PF02650.8 YP_006233307.1 COGmatches:COG0391 Uncharacterized conserved protein; PfamMatches:PF01933.12 YP_006233308.1 COGmatches:COG1660 Predicted P-loop-containing kinase; PfamMatches:PF03668.9 YP_006233309.1 COGmatches:COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; PfamMatches:PF00293.1 YP_006233310.1 COGmatches:COG0492 Thioredoxin reductase; PfamMatches:PF07992.8 YP_006233311.1 COGmatches:COG3883 Uncharacterized protein conserved in bacteria; PfamMatches:PF00877.13 YP_006233312.1 COGmatches:COG0457 FOG: TPR repeat YP_006233313.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006233321.1 PfamMatches:PF10101.3 YP_006233322.1 COGmatches:COG0139 Phosphoribosyl-AMP cyclohydrolase; PfamMatches:PF01502.12 YP_006233323.1 COGmatches:COG0107 Imidazoleglycerol-phosphate synthase; PfamMatches:PF00977.15 YP_006233324.1 COGmatches:COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; PfamMatches:PF00977.15; TIGRfamMatches:TIGR00007 YP_006233325.1 COGmatches:COG0118 Glutamine amidotransferase; PfamMatches:PF00117.22 YP_006233326.1 COGmatches:COG0131 Imidazoleglycerol-phosphate dehydratase; PfamMatches:PF00475.12 YP_006233327.1 COGmatches:COG0141 Histidinol dehydrogenase; PfamMatches:PF00815.14 YP_006233328.1 COGmatches:COG0040 ATP phosphoribosyltransferase; PfamMatches:PF01634.12 YP_006233329.1 COGmatches:COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis; PfamMatches:PF00587.19 YP_006233330.1 COGmatches:COG4990 Uncharacterized protein conserved in bacteria YP_006233332.1 PfamMatches:PF03211.7 YP_006233333.1 COGmatches:COG0110 Acetyltransferase (isoleucine patch superfamily); PfamMatches:PF00132.18 YP_006233334.1 COGmatches:COG0546 Predicted phosphatases; PfamMatches:PF00702.1 YP_006233335.1 PfamMatches:PF07670.8 YP_006233336.1 COGmatches:COG0682 Prolipoprotein diacylglyceryltransferase; PfamMatches:PF01790.12 YP_006233337.1 'COGmatches:COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism; PfamMatches:PF07475.1' YP_006233338.1 COGmatches:COG1820 N-acetylglucosamine-6-phosphate deacetylase; PfamMatches:PF01979.14 YP_006233339.1 COGmatches:COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; PfamMatches:PF01182.1 YP_006233340.1 COGmatches:COG2188 Transcriptional regulators; PfamMatches:PF07702.7 YP_006233341.1 COGmatches:COG1409 Predicted phosphohydrolases; PfamMatches:PF00149.22 YP_006233342.1 COGmatches:COG1950 Predicted membrane protein; PfamMatches:PF04020.7 YP_006233343.1 COGmatches:COG1983 Putative stress-responsive transcriptional regulator; PfamMatches:PF04024.6 YP_006233344.1 COGmatches:COG3595 Uncharacterized conserved protein YP_006233347.1 COGmatches:COG1344 Flagellin and related hook-associated proteins; PfamMatches:PF00669.14 YP_006233348.1 COGmatches:COG0178 Excinuclease ATPase subunit; PfamMatches:PF00005.21 YP_006233349.1 COGmatches:COG0556 Helicase subunit of the DNA excision repair complex; PfamMatches:PF12344.2 YP_006233350.1 COGmatches:COG4897 Uncharacterized protein conserved in bacteria; PfamMatches:PF09964.3 YP_006233352.1 COGmatches:COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; PfamMatches:PF01326.13 YP_006233353.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006233354.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233356.1 'COGmatches:COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain' YP_006233358.1 COGmatches:COG0793 Periplasmic protease; PfamMatches:PF03572.1 YP_006233359.1 COGmatches:COG2177 Cell division protein; PfamMatches:PF02687.15 YP_006233360.1 COGmatches:COG2884 Predicted ATPase involved in cell division; PfamMatches:PF00005.21 YP_006233361.1 'COGmatches:COG2010 Cytochrome c, mono- and diheme variants; PfamMatches:PF00034.15' YP_006233362.1 COGmatches:COG1284 Uncharacterized conserved protein; PfamMatches:PF02588.9 YP_006233363.1 COGmatches:COG1186 Protein chain release factor B; PfamMatches:PF00472.14 YP_006233364.1 COGmatches:COG1186 Protein chain release factor B YP_006233365.1 'COGmatches:COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); PfamMatches:PF07517.8' YP_006233366.1 COGmatches:COG1544 Ribosome-associated protein Y (PSrp-1); PfamMatches:PF02482.13 YP_006233369.1 PfamMatches:PF05400.7 YP_006233370.1 COGmatches:COG1516 Flagellin-specific chaperone FliS; PfamMatches:PF02561.8 YP_006233371.1 COGmatches:COG1345 Flagellar capping protein; PfamMatches:PF07195.6 YP_006233372.1 COGmatches:COG1334 Uncharacterized flagellar protein FlaG; PfamMatches:PF03646.9 YP_006233373.1 COGmatches:COG1344 Flagellin and related hook-associated proteins; PfamMatches:PF00669.14 YP_006233374.1 COGmatches:COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); PfamMatches:PF02599.10 YP_006233375.1 COGmatches:COG1699 Uncharacterized protein conserved in bacteria; PfamMatches:PF02623.9 YP_006233377.1 COGmatches:COG1344 Flagellin and related hook-associated proteins; PfamMatches:PF00669.14 YP_006233378.1 COGmatches:COG1256 Flagellar hook-associated protein; PfamMatches:PF06429.7 YP_006233379.1 PfamMatches:PF05130.6 YP_006233380.1 COGmatches:COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor); PfamMatches:PF04316.7 YP_006233382.1 COGmatches:COG1040 Predicted amidophosphoribosyltransferases; PfamMatches:PF00156.21 YP_006233383.1 PfamMatches:PF10719.3 YP_006233384.1 COGmatches:COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); PfamMatches:PF04851.9 YP_006233385.1 COGmatches:COG1307 Uncharacterized protein conserved in bacteria; PfamMatches:PF02645.10 YP_006233386.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006233387.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF05384.5 YP_006233388.1 COGmatches:COG1739 Uncharacterized conserved protein; PfamMatches:PF01205.13 YP_006233389.1 COGmatches:COG1316 Transcriptional regulator; PfamMatches:PF03816.8 YP_006233390.1 COGmatches:COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; PfamMatches:PF00953.15 YP_006233391.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006233392.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006233393.1 PfamMatches:PF02706.9 YP_006233394.1 PfamMatches:PF04932.9 YP_006233395.1 COGmatches:COG1004 Predicted UDP-glucose 6-dehydrogenase; PfamMatches:PF03721.8 YP_006233396.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006233397.1 COGmatches:COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; PfamMatches:PF01943.11 YP_006233398.1 COGmatches:COG2148 Sugar transferases involved in lipopolysaccharide synthesis; PfamMatches:PF02397.10 YP_006233399.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006233400.1 COGmatches:COG0860 N-acetylmuramoyl-L-alanine amidase; PfamMatches:PF04122.6 YP_006233401.1 COGmatches:COG2385 Sporulation protein and related proteins; PfamMatches:PF04122.6 YP_006233403.1 COGmatches:COG1316 Transcriptional regulator; PfamMatches:PF03816.8 YP_006233404.1 COGmatches:COG0381 UDP-N-acetylglucosamine 2-epimerase; PfamMatches:PF02350.13 YP_006233405.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006233406.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006233407.1 PfamMatches:PF09318.4 YP_006233408.1 COGmatches:COG1210 UDP-glucose pyrophosphorylase; PfamMatches:PF00483.17 YP_006233409.1 'COGmatches:COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PfamMatches:PF00005.21' YP_006233410.1 'COGmatches:COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; PfamMatches:PF01061.18' YP_006233411.1 COGmatches:COG0438 Glycosyltransferase; PfamMatches:PF00534.14 YP_006233412.1 COGmatches:COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; PfamMatches:PF04464.8 YP_006233413.1 COGmatches:COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; PfamMatches:PF04464.8 YP_006233414.1 COGmatches:COG0615 Cytidylyltransferase; PfamMatches:PF01467.1 YP_006233415.1 COGmatches:COG1922 Teichoic acid biosynthesis proteins; PfamMatches:PF03808.7 YP_006233417.1 COGmatches:COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; PfamMatches:PF04464.8 YP_006233418.1 COGmatches:COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; PfamMatches:PF01128.13 YP_006233419.1 COGmatches:COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; PfamMatches:PF08240.6 YP_006233420.1 COGmatches:COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; PfamMatches:PF04464.8 YP_006233421.1 COGmatches:COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; PfamMatches:PF04464.8 YP_006233422.1 PfamMatches:PF08239.5 YP_006233423.1 COGmatches:COG1482 Phosphomannose isomerase; PfamMatches:PF01238.15 YP_006233425.1 PfamMatches:PF03323.7 YP_006233426.1 PfamMatches:PF03845.7 YP_006233427.1 PfamMatches:PF05504.5 YP_006233428.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF00083.18 YP_006233429.1 COGmatches:COG1316 Transcriptional regulator; PfamMatches:PF03816.8 YP_006233430.1 COGmatches:COG0561 Predicted hydrolases of the HAD superfamily; PfamMatches:PF08282.6 YP_006233431.1 COGmatches:COG0791 Cell wall-associated hydrolases (invasion-associated proteins); PfamMatches:PF00877.13 YP_006233433.1 COGmatches:COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation); PfamMatches:PF09587.4 YP_006233435.1 PfamMatches:PF08245.6 YP_006233437.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00532.15 YP_006233438.1 'COGmatches:COG0524 Sugar kinases, ribokinase family; PfamMatches:PF00294.18' YP_006233439.1 'COGmatches:COG1869 ABC-type ribose transport system, auxiliary component; PfamMatches:PF05025.7' YP_006233440.1 'COGmatches:COG1129 ABC-type sugar transport system, ATPase component; PfamMatches:PF00005.21' YP_006233441.1 'COGmatches:COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; PfamMatches:PF02653.10' YP_006233442.1 'COGmatches:COG1879 ABC-type sugar transport system, periplasmic component; PfamMatches:PF00532.15' YP_006233443.1 PfamMatches:PF08239.5 YP_006233446.1 COGmatches:COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); PfamMatches:PF02525.11 YP_006233447.1 COGmatches:COG3527 Alpha-acetolactate decarboxylase; PfamMatches:PF03306.7 YP_006233448.1 'COGmatches:COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; PfamMatches:PF02776.12' YP_006233449.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006233450.1 COGmatches:COG1055 Na+/H+ antiporter NhaD and related arsenite permeases; PfamMatches:PF02040.9 YP_006233453.1 COGmatches:COG5337 Spore coat assembly protein; PfamMatches:PF08757.5 YP_006233455.1 'COGmatches:COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; PfamMatches:PF01613.12' YP_006233457.1 COGmatches:COG0405 Gamma-glutamyltransferase; PfamMatches:PF01019.15 YP_006233458.1 COGmatches:COG1522 Transcriptional regulators; PfamMatches:PF01037.15 YP_006233459.1 COGmatches:COG2059 Chromate transport protein ChrA; PfamMatches:PF02417.9 YP_006233460.1 COGmatches:COG2059 Chromate transport protein ChrA; PfamMatches:PF02417.9 YP_006233462.1 COGmatches:COG0655 Multimeric flavodoxin WrbA; PfamMatches:PF03358.9 YP_006233463.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006233464.1 COGmatches:COG1515 Deoxyinosine 3'endonuclease (endonuclease V); PfamMatches:PF04493.8 YP_006233468.1 COGmatches:COG5444 Uncharacterized conserved protein YP_006233471.1 COGmatches:COG5444 Uncharacterized conserved protein; PfamMatches:PF04740.6 YP_006233475.1 COGmatches:COG3878 Uncharacterized protein conserved in bacteria; PfamMatches:PF09234.4 YP_006233476.1 COGmatches:COG1004 Predicted UDP-glucose 6-dehydrogenase; PfamMatches:PF03721.8 YP_006233477.1 COGmatches:COG4464 Capsular polysaccharide biosynthesis protein; PfamMatches:PF02811.13 YP_006233478.1 COGmatches:COG0489 ATPases involved in chromosome partitioning; PfamMatches:PF01656.17 YP_006233479.1 COGmatches:COG3944 Capsular polysaccharide biosynthesis protein; PfamMatches:PF02706.9 YP_006233481.1 PfamMatches:PF04434.11 YP_006233482.1 'COGmatches:COG0553 Superfamily II DNA/RNA helicases, SNF2 family; PfamMatches:PF00176.17' YP_006233483.1 COGmatches:COG0561 Predicted hydrolases of the HAD superfamily; PfamMatches:PF08282.6 YP_006233484.1 COGmatches:COG1349 Transcriptional regulators of sugar metabolism; PfamMatches:PF00455.16 YP_006233485.1 COGmatches:COG0629 Single-stranded DNA-binding protein; PfamMatches:PF00436.19 YP_006233488.1 COGmatches:COG3764 Sortase (surface protein transpeptidase); PfamMatches:PF04203.7 YP_006233489.1 COGmatches:COG4932 Predicted outer membrane protein; PfamMatches:PF05738.7 YP_006233490.1 COGmatches:COG3947 Response regulator containing CheY-like receiver and SARP domains; PfamMatches:PF00072.18 YP_006233491.1 COGmatches:COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; PfamMatches:PF02518.20 YP_006233492.1 COGmatches:COG1970 Large-conductance mechanosensitive channel; PfamMatches:PF01741.12 YP_006233493.1 COGmatches:COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; PfamMatches:PF07977.7 YP_006233494.1 COGmatches:COG0457 FOG: TPR repeat YP_006233495.1 COGmatches:COG4786 Flagellar basal body rod protein; PfamMatches:PF06429.7 YP_006233496.1 COGmatches:COG4786 Flagellar basal body rod protein; PfamMatches:PF00460.14 YP_006233497.1 COGmatches:COG1077 Actin-like ATPase involved in cell morphogenesis; PfamMatches:PF06723.7 YP_006233498.1 PfamMatches:PF12116.2 YP_006233499.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006233500.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233501.1 PfamMatches:PF12197.2 YP_006233502.1 PfamMatches:PF07602.5 YP_006233503.1 COGmatches:COG1953 Cytosine/uracil/thiamine/allantoin permeases; PfamMatches:PF02133.9 YP_006233505.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233506.1 COGmatches:COG1335 Amidases related to nicotinamidase; PfamMatches:PF00857.14 YP_006233508.1 COGmatches:COG0004 Ammonia permease; PfamMatches:PF00909.15 YP_006233509.1 COGmatches:COG0347 Nitrogen regulatory protein PII; PfamMatches:PF00543.16 YP_006233510.1 COGmatches:COG0671 Membrane-associated phospholipid phosphatase; PfamMatches:PF01569.15 YP_006233511.1 PfamMatches:PF04892.6 YP_006233512.1 COGmatches:COG0739 Membrane proteins related to metalloendopeptidases; PfamMatches:PF01551.1 YP_006233513.1 COGmatches:COG1247 Sortase and related acyltransferases; PfamMatches:PF00583.18 YP_006233516.1 'COGmatches:COG1861 Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog; PfamMatches:PF03102.8' YP_006233518.1 COGmatches:COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; PfamMatches:PF00614.16 YP_006233519.1 COGmatches:COG0789 Predicted transcriptional regulators; PfamMatches:PF07739.7 YP_006233521.1 COGmatches:COG2910 Putative NADH-flavin reductase; PfamMatches:PF05368.7 YP_006233522.1 COGmatches:COG1959 Predicted transcriptional regulator; PfamMatches:PF02082.14 YP_006233523.1 COGmatches:COG0804 Urea amidohydrolase (urease) alpha subunit; PfamMatches:PF01979.14 YP_006233524.1 COGmatches:COG0832 Urea amidohydrolase (urease) beta subunit; PfamMatches:PF00699.14 YP_006233525.1 COGmatches:COG0831 Urea amidohydrolase (urease) gamma subunit; PfamMatches:PF00547.12 YP_006233526.1 'COGmatches:COG0410 ABC-type branched-chain amino acid transport systems, ATPase component; PfamMatches:PF00005.21' YP_006233527.1 'COGmatches:COG4674 Uncharacterized ABC-type transport system, ATPase component; PfamMatches:PF00005.21' YP_006233528.1 'COGmatches:COG4177 ABC-type branched-chain amino acid transport system, permease component; PfamMatches:PF02653.10' YP_006233529.1 'COGmatches:COG0559 Branched-chain amino acid ABC-type transport system, permease components; PfamMatches:PF02653.10' YP_006233530.1 'COGmatches:COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; PfamMatches:PF01094.22' YP_006233532.1 COGmatches:COG3237 Uncharacterized protein conserved in bacteria; PfamMatches:PF05532.6 YP_006233535.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF07719.11 YP_006233537.1 COGmatches:COG2896 Molybdenum cofactor biosynthesis enzyme; PfamMatches:PF06463.7 YP_006233538.1 COGmatches:COG1526 Uncharacterized protein required for formate dehydrogenase activity; PfamMatches:PF02634.9 YP_006233540.1 COGmatches:COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; PfamMatches:PF00092.22 YP_006233542.1 COGmatches:COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; PfamMatches:PF00092.22 YP_006233543.1 COGmatches:COG2385 Sporulation protein and related proteins; PfamMatches:PF08486.4 YP_006233545.1 COGmatches:COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; PfamMatches:PF00275.14 YP_006233546.1 PfamMatches:PF08680.4 YP_006233547.1 COGmatches:COG4836 Predicted membrane protein; PfamMatches:PF06612.5 YP_006233549.1 'COGmatches:COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); PfamMatches:PF02823.10' YP_006233550.1 'COGmatches:COG0055 F0F1-type ATP synthase, beta subunit; PfamMatches:PF00006.19' YP_006233551.1 'COGmatches:COG0224 F0F1-type ATP synthase, gamma subunit; PfamMatches:PF00231.13' YP_006233552.1 'COGmatches:COG0056 F0F1-type ATP synthase, alpha subunit; PfamMatches:PF00006.19' YP_006233553.1 'COGmatches:COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); PfamMatches:PF00213.12' YP_006233554.1 'COGmatches:COG0711 F0F1-type ATP synthase, subunit b; PfamMatches:PF00430.12' YP_006233555.1 'COGmatches:COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; PfamMatches:PF00137.15' YP_006233556.1 'COGmatches:COG0356 F0F1-type ATP synthase, subunit a; PfamMatches:PF00119.14' YP_006233557.1 PfamMatches:PF03899.9 YP_006233558.1 COGmatches:COG0035 Uracil phosphoribosyltransferase; PfamMatches:PF00156.21 YP_006233559.1 COGmatches:COG0112 Glycine/serine hydroxymethyltransferase; PfamMatches:PF00464.13 YP_006233560.1 COGmatches:COG4475 Uncharacterized protein conserved in bacteria; PfamMatches:PF04260.6; TIGRfamMatches:TIGR01440 YP_006233561.1 COGmatches:COG0698 Ribose 5-phosphate isomerase RpiB; PfamMatches:PF02502.12 YP_006233563.1 COGmatches:COG0394 Protein-tyrosine-phosphatase; PfamMatches:PF01451.15 YP_006233564.1 COGmatches:COG1971 Predicted membrane protein; PfamMatches:PF02659.9 YP_006233565.1 COGmatches:COG0009 Putative translation factor (SUA5); PfamMatches:PF01300.12; TIGRfamMatches:TIGR00057 YP_006233566.1 COGmatches:COG1246 N-acetylglutamate synthase and related acetyltransferases YP_006233567.1 PfamMatches:PF09551.4 YP_006233570.1 COGmatches:COG2890 Methylase of polypeptide chain release factors; PfamMatches:PF05175.8 YP_006233571.1 COGmatches:COG0216 Protein chain release factor A; PfamMatches:PF00472.14 YP_006233572.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF00903.19 YP_006233573.1 COGmatches:COG0789 Predicted transcriptional regulators YP_006233574.1 COGmatches:COG0679 Predicted permeases; PfamMatches:PF03547.12 YP_006233575.1 COGmatches:COG0281 Malic enzyme; PfamMatches:PF03949.9 YP_006233576.1 COGmatches:COG1435 Thymidine kinase; PfamMatches:PF00265.12 YP_006233577.1 COGmatches:COG0254 Ribosomal protein L31; PfamMatches:PF01197.12 YP_006233578.1 COGmatches:COG1158 Transcription termination factor; PfamMatches:PF00006.19 YP_006233580.1 'COGmatches:COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; PfamMatches:PF03320.7' YP_006233581.1 COGmatches:COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; PfamMatches:PF00275.14 YP_006233582.1 COGmatches:COG0176 Transaldolase; PfamMatches:PF00923.13 YP_006233583.1 COGmatches:COG0191 Fructose/tagatose bisphosphate aldolase; PfamMatches:PF01116.14 YP_006233584.1 COGmatches:COG0784 FOG: CheY-like receiver; PfamMatches:PF00072.18 YP_006233585.1 PfamMatches:PF10740.3 YP_006233586.1 COGmatches:COG0504 CTP synthase (UTP-ammonia lyase); PfamMatches:PF06418.8 YP_006233587.1 'COGmatches:COG3343 DNA-directed RNA polymerase, delta subunit; PfamMatches:PF05066.7' YP_006233589.1 COGmatches:COG1960 Acyl-CoA dehydrogenases; PfamMatches:PF00441.1 YP_006233590.1 COGmatches:COG0247 Fe-S oxidoreductase; PfamMatches:PF02754.10 YP_006233591.1 COGmatches:COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; PfamMatches:PF00614.16 YP_006233592.1 COGmatches:COG4294 UV damage repair endonuclease; PfamMatches:PF03851.8 YP_006233594.1 COGmatches:COG0262 Dihydrofolate reductase; PfamMatches:PF01872.11 YP_006233595.1 'COGmatches:COG1132 ABC-type multidrug transport system, ATPase and permease components; PfamMatches:PF00664.17' YP_006233596.1 COGmatches:COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; PfamMatches:PF00614.16 YP_006233597.1 COGmatches:COG1284 Uncharacterized conserved protein; PfamMatches:PF02588.9 YP_006233598.1 COGmatches:COG2181 Nitrate reductase gamma subunit; PfamMatches:PF02665.8 YP_006233599.1 COGmatches:COG2180 Nitrate reductase delta subunit; PfamMatches:PF02613.9 YP_006233600.1 COGmatches:COG1140 Nitrate reductase beta subunit YP_006233601.1 COGmatches:COG5013 Nitrate reductase alpha subunit; PfamMatches:PF00384.16 YP_006233605.1 COGmatches:COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PfamMatches:PF00027.23 YP_006233606.1 COGmatches:COG2223 Nitrate/nitrite transporter; PfamMatches:PF07690.10 YP_006233607.1 COGmatches:COG0018 Arginyl-tRNA synthetase; PfamMatches:PF00750.13 YP_006233608.1 COGmatches:COG4506 Uncharacterized protein conserved in bacteria; PfamMatches:PF09148.4 YP_006233609.1 PfamMatches:PF11420.2 YP_006233610.1 COGmatches:COG0535 Predicted Fe-S oxidoreductases; PfamMatches:PF04055.15 YP_006233612.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006233613.1 PfamMatches:PF12730.1 YP_006233614.1 COGmatches:COG0612 Predicted Zn-dependent peptidases; PfamMatches:PF05193.15 YP_006233615.1 COGmatches:COG0612 Predicted Zn-dependent peptidases; PfamMatches:PF00675.14 YP_006233617.1 COGmatches:COG3391 Uncharacterized conserved protein YP_006233618.1 COGmatches:COG3391 Uncharacterized conserved protein YP_006233620.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF12895.1 YP_006233621.1 PfamMatches:PF11131.2 YP_006233622.1 COGmatches:COG2606 Uncharacterized conserved protein; PfamMatches:PF04073.9 YP_006233623.1 'COGmatches:COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; PfamMatches:PF00491.15' YP_006233624.1 COGmatches:COG0421 Spermidine synthase; PfamMatches:PF01564.11 YP_006233625.1 COGmatches:COG0744 Membrane carboxypeptidase (penicillin-binding protein); PfamMatches:PF00912.16 YP_006233626.1 PfamMatches:PF08741.4 YP_006233627.1 COGmatches:COG1994 Zn-dependent proteases; PfamMatches:PF02163.16 YP_006233628.1 'COGmatches:COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog; PfamMatches:PF01361.1' YP_006233629.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006233630.1 COGmatches:COG0441 Threonyl-tRNA synthetase; PfamMatches:PF00587.19 YP_006233633.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233634.1 COGmatches:COG1959 Predicted transcriptional regulator; PfamMatches:PF02082.14 YP_006233635.1 COGmatches:COG3465 Uncharacterized conserved protein YP_006233636.1 COGmatches:COG1078 HD superfamily phosphohydrolases; PfamMatches:PF01966.16 YP_006233637.1 PfamMatches:PF07293.5 YP_006233640.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006233642.1 COGmatches:COG0095 Lipoate-protein ligase A; PfamMatches:PF03099.13 YP_006233643.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006233644.1 COGmatches:COG0280 Phosphotransacetylase; PfamMatches:PF01515.13 YP_006233646.1 COGmatches:COG3253 Uncharacterized conserved protein; PfamMatches:PF06778.6 YP_006233647.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233648.1 COGmatches:COG0436 Aspartate/tyrosine/aromatic aminotransferase; PfamMatches:PF00155.15 YP_006233649.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233650.1 COGmatches:COG0439 Biotin carboxylase; PfamMatches:PF07478.7 YP_006233651.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233652.1 PfamMatches:PF07883.5 YP_006233653.1 PfamMatches:PF00800.12 YP_006233655.1 COGmatches:COG2814 Arabinose efflux permease; PfamMatches:PF07690.10 YP_006233656.1 COGmatches:COG0833 Amino acid transporters; PfamMatches:PF00324.15 YP_006233657.1 COGmatches:COG4187 Arginine degradation protein (predicted deacylase); PfamMatches:PF01546.22 YP_006233658.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006233659.1 COGmatches:COG0334 Glutamate dehydrogenase/leucine dehydrogenase; PfamMatches:PF00208.15 YP_006233662.1 'COGmatches:COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes; PfamMatches:PF00908.11' YP_006233663.1 'COGmatches:COG1088 dTDP-D-glucose 4,6-dehydratase; PfamMatches:PF01370.15' YP_006233664.1 COGmatches:COG1209 dTDP-glucose pyrophosphorylase; PfamMatches:PF00483.17 YP_006233665.1 'COGmatches:COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase; PfamMatches:PF04101.10' YP_006233666.1 'COGmatches:COG1861 Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog; PfamMatches:PF02348.13' YP_006233667.1 COGmatches:COG2089 Sialic acid synthase; PfamMatches:PF03102.8 YP_006233668.1 COGmatches:COG0456 Acetyltransferases; PfamMatches:PF00583.18 YP_006233669.1 COGmatches:COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; PfamMatches:PF01041.11 YP_006233670.1 COGmatches:COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; PfamMatches:PF05159.8 YP_006233671.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006233674.1 PfamMatches:PF09671.4 YP_006233675.1 COGmatches:COG2363 Uncharacterized small membrane protein; PfamMatches:PF04241.9 YP_006233676.1 COGmatches:COG2233 Xanthine/uracil permeases; PfamMatches:PF00860.14 YP_006233679.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006233680.1 COGmatches:COG0692 Uracil DNA glycosylase; PfamMatches:PF03167.13 YP_006233681.1 COGmatches:COG0463 Glycosyltransferases involved in cell wall biogenesis; PfamMatches:PF00535.20 YP_006233682.1 COGmatches:COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; PfamMatches:PF08543.6 YP_006233684.1 COGmatches:COG1621 Beta-fructosidases (levanase/invertase); PfamMatches:PF00251.14 YP_006233685.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF02378.12' YP_006233686.1 COGmatches:COG2116 Formate/nitrite family of transporters; PfamMatches:PF01226.11 YP_006233687.1 COGmatches:COG3711 Transcriptional antiterminator; PfamMatches:PF00874.14 YP_006233690.1 COGmatches:COG1404 Subtilisin-like serine proteases; PfamMatches:PF00082.16 YP_006233691.1 'COGmatches:COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; PfamMatches:PF00296.14' YP_006233692.1 COGmatches:COG0778 Nitroreductase; PfamMatches:PF00881.18 YP_006233693.1 COGmatches:COG0772 Bacterial cell division membrane protein; PfamMatches:PF01098.13 YP_006233695.1 'COGmatches:COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4; PfamMatches:PF03626.8' YP_006233696.1 'COGmatches:COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; PfamMatches:PF00510.12' YP_006233697.1 'COGmatches:COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; PfamMatches:PF00115.14' YP_006233698.1 'COGmatches:COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; PfamMatches:PF02790.9' YP_006233700.1 COGmatches:COG2261 Predicted membrane protein; PfamMatches:PF04226.7 YP_006233701.1 COGmatches:COG4468 Galactose-1-phosphate uridyltransferase; PfamMatches:PF02744.11 YP_006233702.1 COGmatches:COG0153 Galactokinase; PfamMatches:PF10509.3 YP_006233703.1 COGmatches:COG2246 Predicted membrane protein; PfamMatches:PF04138.8 YP_006233704.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006233705.1 PfamMatches:PF08671.4 YP_006233706.1 COGmatches:COG3162 Predicted membrane protein; PfamMatches:PF04341.6 YP_006233707.1 COGmatches:COG4147 Predicted symporter; PfamMatches:PF00474.11 YP_006233708.1 COGmatches:COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis; PfamMatches:PF01323.14 YP_006233709.1 COGmatches:COG2837 Predicted iron-dependent peroxidase; PfamMatches:PF04261.6 YP_006233710.1 COGmatches:COG2822 Predicted periplasmic lipoprotein involved in iron transport; PfamMatches:PF09375.4 YP_006233711.1 COGmatches:COG0672 High-affinity Fe2+/Pb2+ permease; PfamMatches:PF03239.8 YP_006233712.1 COGmatches:COG0352 Thiamine monophosphate synthase; PfamMatches:PF02581.11 YP_006233713.1 'COGmatches:COG2145 Hydroxyethylthiazole kinase, sugar kinase family; PfamMatches:PF02110.9' YP_006233714.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006233715.1 COGmatches:COG1380 Putative effector of murein hydrolase LrgA; PfamMatches:PF03788.8 YP_006233716.1 COGmatches:COG1346 Putative effector of murein hydrolase; PfamMatches:PF04172.10; TIGRfamMatches:TIGR00659 YP_006233717.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006233720.1 PfamMatches:PF12730.1 YP_006233722.1 COGmatches:COG1346 Putative effector of murein hydrolase; PfamMatches:PF04172.10 YP_006233724.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233725.1 COGmatches:COG4895 Uncharacterized conserved protein; PfamMatches:PF09962.3; TIGRfamMatches:TIGR03833 YP_006233726.1 COGmatches:COG1092 Predicted SAM-dependent methyltransferases; PfamMatches:PF10672.3 YP_006233728.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF00903.19 YP_006233729.1 PfamMatches:PF10924.2 YP_006233730.1 COGmatches:COG1455 Phosphotransferase system cellobiose-specific component IIC; PfamMatches:PF02378.12 YP_006233732.1 COGmatches:COG1404 Subtilisin-like serine proteases; PfamMatches:PF00082.16 YP_006233734.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF02378.12' YP_006233735.1 COGmatches:COG3711 Transcriptional antiterminator; PfamMatches:PF00874.14 YP_006233736.1 'COGmatches:COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; PfamMatches:PF01501.14' YP_006233737.1 COGmatches:COG5522 Predicted integral membrane protein; PfamMatches:PF09529.4 YP_006233738.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006233739.1 COGmatches:COG0162 Tyrosyl-tRNA synthetase; PfamMatches:PF00579.19 YP_006233740.1 COGmatches:COG2234 Predicted aminopeptidases; PfamMatches:PF04389.1 YP_006233741.1 COGmatches:COG1396 Predicted transcriptional regulators YP_006233742.1 COGmatches:COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit; PfamMatches:PF02627.1 YP_006233743.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233744.1 COGmatches:COG2357 Uncharacterized protein conserved in bacteria; PfamMatches:PF04607.11 YP_006233745.1 'COGmatches:COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PfamMatches:PF01040.12' YP_006233749.1 PfamMatches:PF12459.2 YP_006233750.1 COGmatches:COG1020 Non-ribosomal peptide synthetase modules and related proteins; PfamMatches:PF00501.22 YP_006233751.1 COGmatches:COG1696 Predicted membrane protein involved in D-alanine export; PfamMatches:PF03062.13 YP_006233752.1 COGmatches:COG0236 Acyl carrier protein; PfamMatches:PF00550.19 YP_006233753.1 COGmatches:COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); PfamMatches:PF04918.6 YP_006233754.1 COGmatches:COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); PfamMatches:PF00106.19 YP_006233755.1 COGmatches:COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PfamMatches:PF01063.13 YP_006233756.1 'COGmatches:COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; PfamMatches:PF02056.10' YP_006233757.1 COGmatches:COG1447 Phosphotransferase system cellobiose-specific component IIA; PfamMatches:PF02255.10 YP_006233758.1 COGmatches:COG1455 Phosphotransferase system cellobiose-specific component IIC; PfamMatches:PF02378.12 YP_006233759.1 COGmatches:COG1440 Phosphotransferase system cellobiose-specific component IIB; PfamMatches:PF02302.11 YP_006233760.1 COGmatches:COG3711 Transcriptional antiterminator; PfamMatches:PF00874.14 YP_006233763.1 COGmatches:COG2094 3-methyladenine DNA glycosylase; PfamMatches:PF02245.10 YP_006233764.1 COGmatches:COG0753 Catalase; PfamMatches:PF00199.13 YP_006233765.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233766.1 PfamMatches:PF12679.1 YP_006233767.1 'COGmatches:COG1131 ABC-type multidrug transport system, ATPase component; PfamMatches:PF00005.21' YP_006233771.1 'COGmatches:COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PfamMatches:PF04542.8' YP_006233773.1 COGmatches:COG1457 Purine-cytosine permease and related proteins; PfamMatches:PF02133.9 YP_006233774.1 COGmatches:COG0063 Predicted sugar kinase; PfamMatches:PF01256.11 YP_006233775.1 'COGmatches:COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components; PfamMatches:PF00005.21' YP_006233776.1 'COGmatches:COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; PfamMatches:PF00005.21' YP_006233777.1 'COGmatches:COG1294 Cytochrome bd-type quinol oxidase, subunit 2; PfamMatches:PF02322.9' YP_006233778.1 'COGmatches:COG1271 Cytochrome bd-type quinol oxidase, subunit 1; PfamMatches:PF01654.11' YP_006233779.1 COGmatches:COG3493 Na+/citrate symporter; PfamMatches:PF03390.9 YP_006233780.1 COGmatches:COG0501 Zn-dependent protease with chaperone function; PfamMatches:PF01435.12 YP_006233782.1 COGmatches:COG0726 Predicted xylanase/chitin deacetylase; PfamMatches:PF01522.15 YP_006233784.1 COGmatches:COG0428 Predicted divalent heavy-metal cations transporter; PfamMatches:PF02535.16 YP_006233785.1 'COGmatches:COG3839 ABC-type sugar transport systems, ATPase components; PfamMatches:PF00005.21' YP_006233786.1 COGmatches:COG2508 Regulator of polyketide synthase expression YP_006233787.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006233788.1 COGmatches:COG1284 Uncharacterized conserved protein; PfamMatches:PF02588.9 YP_006233789.1 PfamMatches:PF11611.2 YP_006233790.1 COGmatches:COG1087 UDP-glucose 4-epimerase; PfamMatches:PF01370.15 YP_006233793.1 COGmatches:COG4585 Signal transduction histidine kinase; PfamMatches:PF07730.7 YP_006233794.1 COGmatches:COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PfamMatches:PF00072.18 YP_006233795.1 COGmatches:COG2195 Di- and tripeptidases; PfamMatches:PF01546.22 YP_006233798.1 COGmatches:COG4894 Uncharacterized conserved protein; PfamMatches:PF04525.6 YP_006233799.1 COGmatches:COG0620 Methionine synthase II (cobalamin-independent); PfamMatches:PF01717.12 YP_006233800.1 COGmatches:COG0620 Methionine synthase II (cobalamin-independent); PfamMatches:PF01717.12 YP_006233801.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233802.1 'COGmatches:COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; PfamMatches:PF01144.17' YP_006233803.1 'COGmatches:COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; PfamMatches:PF01144.17' YP_006233804.1 COGmatches:COG2610 H+/gluconate symporter and related permeases; PfamMatches:PF03600.10 YP_006233806.1 COGmatches:COG0500 SAM-dependent methyltransferases; PfamMatches:PF08241.6 YP_006233808.1 COGmatches:COG1972 Nucleoside permease; PfamMatches:PF07662.7 YP_006233809.1 PfamMatches:PF11738.2 YP_006233811.1 COGmatches:COG0753 Catalase; PfamMatches:PF00199.13 YP_006233812.1 COGmatches:COG2851 H+/citrate symporter; PfamMatches:PF03600.10 YP_006233813.1 COGmatches:COG2273 Beta-glucanase/Beta-glucan synthetase; PfamMatches:PF00722.15 YP_006233815.1 COGmatches:COG3711 Transcriptional antiterminator; PfamMatches:PF00874.14 YP_006233818.1 COGmatches:COG2270 Permeases of the major facilitator superfamily; PfamMatches:PF11700.2 YP_006233819.1 COGmatches:COG0513 Superfamily II DNA and RNA helicases; PfamMatches:PF00270.23 YP_006233820.1 COGmatches:COG2755 Lysophospholipase L1 and related esterases; PfamMatches:PF00657.1 YP_006233824.1 PfamMatches:PF10898.2 YP_006233828.1 COGmatches:COG3209 Rhs family protein; PfamMatches:PF05593.8 YP_006233830.1 COGmatches:COG3209 Rhs family protein; PfamMatches:PF05593.8 YP_006233831.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006233832.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233833.1 COGmatches:COG4340 Uncharacterized protein conserved in bacteria; PfamMatches:PF10014.3 YP_006233834.1 COGmatches:COG0589 Universal stress protein UspA and related nucleotide-binding proteins; PfamMatches:PF00582.20 YP_006233835.1 COGmatches:COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; PfamMatches:PF00232.12 YP_006233836.1 'COGmatches:COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PfamMatches:PF00358.14' YP_006233837.1 COGmatches:COG4304 Uncharacterized protein conserved in bacteria; PfamMatches:PF10004.3 YP_006233844.1 COGmatches:COG5444 Uncharacterized conserved protein; PfamMatches:PF04740.6 YP_006233847.1 COGmatches:COG3507 Beta-xylosidase; PfamMatches:PF04616.8 YP_006233849.1 PfamMatches:PF09021.5 YP_006233850.1 COGmatches:COG2986 Histidine ammonia-lyase; PfamMatches:PF00221.13 YP_006233851.1 COGmatches:COG2987 Urocanate hydratase; PfamMatches:PF01175.12 YP_006233852.1 COGmatches:COG1228 Imidazolonepropionase and related amidohydrolases; PfamMatches:PF01979.14 YP_006233853.1 'COGmatches:COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; PfamMatches:PF00491.15' YP_006233854.1 COGmatches:COG0833 Amino acid transporters; PfamMatches:PF00324.15 YP_006233855.1 COGmatches:COG0213 Thymidine phosphorylase; PfamMatches:PF00591.15 YP_006233856.1 COGmatches:COG1972 Nucleoside permease; PfamMatches:PF07662.7 YP_006233857.1 COGmatches:COG0274 Deoxyribose-phosphate aldolase; PfamMatches:PF01791.3 YP_006233859.1 'COGmatches:COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; PfamMatches:PF04198.7' YP_006233861.1 PfamMatches:PF06724.5 YP_006233862.1 COGmatches:COG3192 Ethanolamine utilization protein; PfamMatches:PF04346.6 YP_006233863.1 COGmatches:COG2079 Uncharacterized protein involved in propionate catabolism; PfamMatches:PF03972.8 YP_006233864.1 COGmatches:COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; PfamMatches:PF01546.22 YP_006233865.1 'COGmatches:COG1126 ABC-type polar amino acid transport system, ATPase component; PfamMatches:PF00005.21' YP_006233866.1 'COGmatches:COG0765 ABC-type amino acid transport system, permease component; PfamMatches:PF00528.16' YP_006233867.1 'COGmatches:COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; PfamMatches:PF00497.14' YP_006233868.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006233869.1 'COGmatches:COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; PfamMatches:PF00296.14' YP_006233871.1 COGmatches:COG3049 Penicillin V acylase and related amidases; PfamMatches:PF02275.12 YP_006233873.1 COGmatches:COG0561 Predicted hydrolases of the HAD superfamily; PfamMatches:PF08282.6 YP_006233875.1 PfamMatches:PF11631.2 YP_006233876.1 PfamMatches:PF04065.9 YP_006233880.1 'COGmatches:COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PfamMatches:PF01497.12' YP_006233881.1 COGmatches:COG5294 Uncharacterized protein conserved in bacteria; PfamMatches:PF06486.5 YP_006233882.1 'COGmatches:COG0577 ABC-type antimicrobial peptide transport system, permease component; PfamMatches:PF02687.15' YP_006233883.1 'COGmatches:COG1136 ABC-type antimicrobial peptide transport system, ATPase component; PfamMatches:PF00005.21' YP_006233884.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006233885.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006233886.1 COGmatches:COG0191 Fructose/tagatose bisphosphate aldolase; PfamMatches:PF01116.14 YP_006233887.1 COGmatches:COG1082 Sugar phosphate isomerases/epimerases; PfamMatches:PF01261.18 YP_006233888.1 COGmatches:COG1082 Sugar phosphate isomerases/epimerases; PfamMatches:PF01261.18 YP_006233889.1 COGmatches:COG0673 Predicted dehydrogenases and related proteins; PfamMatches:PF01408.16 YP_006233890.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233891.1 COGmatches:COG1082 Sugar phosphate isomerases/epimerases; PfamMatches:PF01261.18 YP_006233892.1 COGmatches:COG3962 Acetolactate synthase; PfamMatches:PF02775.15 YP_006233893.1 'COGmatches:COG0524 Sugar kinases, ribokinase family; PfamMatches:PF00294.18' YP_006233894.1 COGmatches:COG3718 Uncharacterized enzyme involved in inositol metabolism; PfamMatches:PF04962.6 YP_006233895.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006233896.1 COGmatches:COG1349 Transcriptional regulators of sugar metabolism; PfamMatches:PF00455.16 YP_006233897.1 COGmatches:COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); PfamMatches:PF00248.15 YP_006233900.1 PfamMatches:PF10850.2 YP_006233902.1 'COGmatches:COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding; PfamMatches:PF11706.2' YP_006233903.1 COGmatches:COG3448 CBS-domain-containing membrane protein; PfamMatches:PF04982.7 YP_006233904.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF00083.18 YP_006233905.1 'COGmatches:COG0326 Molecular chaperone, HSP90 family; PfamMatches:PF00183.12' YP_006233907.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233909.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006233910.1 COGmatches:COG1012 NAD-dependent aldehyde dehydrogenases; PfamMatches:PF00171.1 YP_006233911.1 COGmatches:COG1714 Predicted membrane protein/domain; PfamMatches:PF06271.6 YP_006233912.1 COGmatches:COG1520 FOG: WD40-like repeat; PfamMatches:PF01011.15 YP_006233914.1 COGmatches:COG1714 Predicted membrane protein/domain; PfamMatches:PF06271.6 YP_006233915.1 COGmatches:COG2311 Predicted membrane protein; PfamMatches:PF04235.6 YP_006233916.1 'COGmatches:COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; PfamMatches:PF07883.5' YP_006233917.1 COGmatches:COG1309 Transcriptional regulator; PfamMatches:PF00440.17 YP_006233918.1 COGmatches:COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PfamMatches:PF00106.19 YP_006233919.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006233920.1 PfamMatches:PF03788.8 YP_006233921.1 COGmatches:COG1346 Putative effector of murein hydrolase; PfamMatches:PF04172.10 YP_006233923.1 PfamMatches:PF11187.2 YP_006233926.1 COGmatches:COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; PfamMatches:PF00999.15 YP_006233927.1 COGmatches:COG5039 Exopolysaccharide biosynthesis protein; PfamMatches:PF04230.7 YP_006233928.1 COGmatches:COG1929 Glycerate kinase; PfamMatches:PF02595.9; TIGRfamMatches:TIGR00045 YP_006233929.1 COGmatches:COG1802 Transcriptional regulators; PfamMatches:PF00392.15 YP_006233930.1 COGmatches:COG1070 Sugar (pentulose and hexulose) kinases; PfamMatches:PF00370.15 YP_006233931.1 COGmatches:COG2610 H+/gluconate symporter and related permeases; PfamMatches:PF02447.10 YP_006233932.1 COGmatches:COG0362 6-phosphogluconate dehydrogenase; PfamMatches:PF00393.13 YP_006233933.1 COGmatches:COG0450 Peroxiredoxin; PfamMatches:PF00578.15 YP_006233934.1 'COGmatches:COG3634 Alkyl hydroperoxide reductase, large subunit; PfamMatches:PF07992.8' YP_006233935.1 PfamMatches:PF04230.7 YP_006233938.1 COGmatches:COG3855 Uncharacterized protein conserved in bacteria; PfamMatches:PF06874.5 YP_006233941.1 'COGmatches:COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; PfamMatches:PF12008.2' YP_006233942.1 COGmatches:COG0732 Restriction endonuclease S subunits; PfamMatches:PF01420.13 YP_006233943.1 COGmatches:COG0286 Type I restriction-modification system methyltransferase subunit; PfamMatches:PF02384.10 YP_006233944.1 COGmatches:COG1576 Uncharacterized conserved protein; PfamMatches:PF02590.11 YP_006233947.1 COGmatches:COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; PfamMatches:PF08240.6 YP_006233949.1 PfamMatches:PF10852.2 YP_006233951.1 COGmatches:COG3863 Uncharacterized distant relative of cell wall-associated hydrolases; PfamMatches:PF05708.6 YP_006233952.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006233953.1 COGmatches:COG0457 FOG: TPR repeat; PfamMatches:PF12862.1 YP_006233955.1 'COGmatches:COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; PfamMatches:PF00491.15' YP_006233956.1 COGmatches:COG0833 Amino acid transporters; PfamMatches:PF00324.15 YP_006233957.1 COGmatches:COG4992 Ornithine/acetylornithine aminotransferase; PfamMatches:PF00202.15 YP_006233958.1 'COGmatches:COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; PfamMatches:PF00158.20' YP_006233959.1 COGmatches:COG0642 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006233960.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006233961.1 PfamMatches:PF03413.13 YP_006233962.1 COGmatches:COG3212 Predicted membrane protein; PfamMatches:PF03413.13 YP_006233963.1 'COGmatches:COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; PfamMatches:PF00089.20' YP_006233964.1 COGmatches:COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I; PfamMatches:PF00753.21 YP_006233965.1 COGmatches:COG4853 Uncharacterized protein conserved in bacteria; PfamMatches:PF09648.4 YP_006233966.1 COGmatches:COG4863 Uncharacterized protein conserved in bacteria; PfamMatches:PF07435.5 YP_006233967.1 COGmatches:COG5002 Signal transduction histidine kinase; PfamMatches:PF02518.20 YP_006233968.1 COGmatches:COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PfamMatches:PF00072.18 YP_006233969.1 COGmatches:COG0104 Adenylosuccinate synthase; PfamMatches:PF00709.15 YP_006233970.1 PfamMatches:PF00903.19 YP_006233971.1 COGmatches:COG0305 Replicative DNA helicase; PfamMatches:PF03796.9 YP_006233976.1 COGmatches:COG2807 Cyanate permease; PfamMatches:PF07690.10 YP_006233978.1 COGmatches:COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; PfamMatches:PF02366.12 YP_006233979.1 COGmatches:COG0359 Ribosomal protein L9; PfamMatches:PF03948.8 YP_006233980.1 COGmatches:COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain; PfamMatches:PF01368.14 YP_006233981.1 COGmatches:COG4241 Predicted membrane protein; PfamMatches:PF09991.3 YP_006233983.1 COGmatches:COG5577 Spore coat protein; PfamMatches:PF07875.6 YP_006233984.1 COGmatches:COG1733 Predicted transcriptional regulators; PfamMatches:PF01638.11 YP_006233985.1 COGmatches:COG1227 Inorganic pyrophosphatase/exopolyphosphatase; PfamMatches:PF02833.8 YP_006233988.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233992.1 COGmatches:COG0071 Molecular chaperone (small heat shock protein); PfamMatches:PF00011.15 YP_006233995.1 COGmatches:COG4319 Ketosteroid isomerase homolog YP_006233996.1 COGmatches:COG1357 Uncharacterized low-complexity proteins; PfamMatches:PF00805.16 YP_006233997.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006233998.1 COGmatches:COG0583 Transcriptional regulator; PfamMatches:PF03466.14 YP_006233999.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006234001.1 'COGmatches:COG0491 Zn-dependent hydrolases, including glyoxylases; PfamMatches:PF00753.21' YP_006234002.1 COGmatches:COG1846 Transcriptional regulators; PfamMatches:PF01047.16 YP_006234003.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006234004.1 COGmatches:COG2364 Predicted membrane protein; PfamMatches:PF02588.9 YP_006234005.1 COGmatches:COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; PfamMatches:PF00583.18 YP_006234006.1 COGmatches:COG2315 Uncharacterized protein conserved in bacteria; PfamMatches:PF04237.7 YP_006234007.1 COGmatches:COG0262 Dihydrofolate reductase; PfamMatches:PF01872.11 YP_006234008.1 COGmatches:COG0789 Predicted transcriptional regulators; PfamMatches:PF00376.17 YP_006234009.1 COGmatches:COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; PfamMatches:PF00892.14 YP_006234010.1 COGmatches:COG1331 Highly conserved protein containing a thioredoxin domain; PfamMatches:PF03190.9 YP_006234011.1 COGmatches:COG1266 Predicted metal-dependent membrane protease; PfamMatches:PF02517.10 YP_006234012.1 COGmatches:COG0477 Permeases of the major facilitator superfamily; PfamMatches:PF07690.10 YP_006234013.1 COGmatches:COG0110 Acetyltransferase (isoleucine patch superfamily); PfamMatches:PF12464.2 YP_006234014.1 COGmatches:COG0346 Lactoylglutathione lyase and related lyases; PfamMatches:PF12681.1 YP_006234015.1 COGmatches:COG1609 Transcriptional regulators; PfamMatches:PF00532.15 YP_006234017.1 COGmatches:COG0708 Exonuclease III; PfamMatches:PF03372.17 YP_006234018.1 COGmatches:COG0238 Ribosomal protein S18; PfamMatches:PF01084.14 YP_006234019.1 COGmatches:COG0629 Single-stranded DNA-binding protein; PfamMatches:PF00436.19 YP_006234020.1 COGmatches:COG0360 Ribosomal protein S6; PfamMatches:PF01250.11 YP_006234021.1 'COGmatches:COG0012 Predicted GTPase, probable translation factor; PfamMatches:PF06071.7; TIGRfamMatches:TIGR00092' YP_006234022.1 'COGmatches:COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; PfamMatches:PF00384.16' YP_006234023.1 COGmatches:COG4481 Uncharacterized protein conserved in bacteria; PfamMatches:PF06107.5 YP_006234024.1 COGmatches:COG3949 Uncharacterized membrane protein YP_006234026.1 PfamMatches:PF06866.5 YP_006234027.1 COGmatches:COG1475 Predicted transcriptional regulators; PfamMatches:PF02195.12 YP_006234028.1 COGmatches:COG1192 ATPases involved in chromosome partitioning; PfamMatches:PF01656.17 YP_006234029.1 PfamMatches:PF06713.5 YP_006234030.1 COGmatches:COG1475 Predicted transcriptional regulators; PfamMatches:PF02195.12 YP_006234031.1 COGmatches:COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; PfamMatches:PF02527.9 YP_006234032.1 COGmatches:COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; PfamMatches:PF01134.16 YP_006234033.1 COGmatches:COG0486 Predicted GTPase; PfamMatches:PF10396.3 YP_006234034.1 COGmatches:COG1847 Predicted RNA-binding protein; PfamMatches:PF01424.16 YP_006234035.1 COGmatches:COG0706 Preprotein translocase subunit YidC; PfamMatches:PF02096.14 YP_006234036.1 COGmatches:COG0594 RNase P protein component; PfamMatches:PF00825.12